LOCUS       DASZZE010000001         1549 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_293376, whole genome shotgun sequence.
ACCESSION   DASZZE010000001 DASZZE010000000
VERSION     DASZZE010000001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1549)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1549
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293376"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..858
                     /locus_tag="VHD88_00005"
     CDS             <1..858
                     /locus_tag="VHD88_00005"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HVS20190.1"
                     /translation="GLTEPGAGSDVVGARSTARREGDEYVLNGEKMWISLADVADNFL
                     FFCWTDEEKRRKRDHSGMSCFIVERGMKGFSSGTIHGKLGIRAGNTGYFSLQDVRVPK
                     ENLVGEEGEGFKIAMFALEQGRFTVAAGATGVIRASRDASVAYANERETFGTKIANHQ
                     LVKQKIADMEADYQMCRLLWLRAGWLKNEGRPSGRATSLAKWQATVRSEEAASMAIEV
                     HGANGYSNDYPVERYLRNCKAAVIYEGTRDIHTLMQADWALGLKKERLARKTLPPWKA
                     HESRGAVAL"
     gene            1370..>1549
                     /locus_tag="VHD88_00010"
     CDS             1370..>1549
                     /locus_tag="VHD88_00010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20191.1"
                     /translation="MHAGALWPETYPLIAFAKRKIPLFIMVGTNDPFFPLADVRATRD
                     ELVKHGLTVQLTEIPH"
BASE COUNT          348 a          414 c          472 g          315 t
ORIGIN      
        1 gggttgactg aacccggcgc agggtcggac gtcgtaggcg cgcgctcaac tgcgcggcgc
       61 gaaggcgacg aatatgtttt gaacggagag aagatgtgga tcagtctcgc cgacgtggct
      121 gacaactttc ttttcttttg ctggaccgat gaagagaagc gccgcaaacg cgatcactca
      181 ggcatgtcat gcttcatcgt cgagcgcggc atgaaaggtt tctcttcggg aacgattcac
      241 ggcaagctcg gcatccgcgc cggcaacacc ggatactttt cattgcagga cgtgcgcgtt
      301 ccgaaagaaa acctcgtcgg cgaagaaggc gaaggattca agatcgcgat gttcgcgctc
      361 gagcaagggc gattcaccgt cgccgccggc gccacgggag tgattcgcgc ctcgcgcgac
      421 gcgtccgtcg cttacgcgaa cgagcgcgaa acgttcggca cgaagatcgc aaaccatcaa
      481 ctggtgaaac agaaaattgc cgacatggag gctgactatc agatgtgccg cttgctctgg
      541 ctgcgcgctg gatggctcaa gaacgaaggc cggcccagcg gtcgcgcgac tagtttggcg
      601 aaatggcaag cgacggtgcg cagcgaggaa gccgcatcga tggcgatcga agttcacggg
      661 gcgaatggat attcgaacga ctatcccgtc gaacgctacc tgcgcaactg caaagccgcg
      721 gtcatctatg aaggcacacg cgatattcac acgctgatgc aagccgattg ggcgctggga
      781 ttgaaaaaag aaagactcgc gagaaagact ctgccgccgt ggaaagcgca cgagtcgcgt
      841 ggggcggtcg cactctaatt aatactggca ctcttcgcag cgcaagagct ttcaagattg
      901 gttgagtgat gaaacatttt cttctcgtcc tgattgtcgt cgtgctgagt ttcgcttgtg
      961 tggttttcgc cgctcccgcg aagaacgaga tcgtgaaaga cactttgctc ttcgagggca
     1021 agaagcgaac ctattatctt tttgtgccag caggattgag cgacaaaacc gccgtgcctc
     1081 tggtggtgac gctgcaaggt tcagggcgaa atggattgtc actggtagag aagcggaaag
     1141 acctcgcagc taccgagggc ttgatcatcg tcgggcctga tgcactaaat tcgcagagtt
     1201 gggatgtgcc ccaagacggc ccagactttt tgcacgcgtt ggtcgaggcg ctcaagacca
     1261 agtacccgat taacccgcgc agggtttacc tgtttgggca ttcggcgggg gcgaacatgg
     1321 ggctctacat gtcgctgtac gagtcggagt atatttcgcg gcgaccgccg tgcacgcggg
     1381 ggccttgtgg ccggaaacct atcctctcat cgcttttgcg aaacgcaaaa ttccgctctt
     1441 catcatggtt gggaccaacg atccgttctt tccgctggcg gacgtccgcg cgacgagaga
     1501 tgaactggtg aagcacggcc tcacggtgca actcacggaa atcccacac
//
LOCUS       DASZZE010000002         1694 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_260773, whole genome shotgun sequence.
ACCESSION   DASZZE010000002 DASZZE010000000
VERSION     DASZZE010000002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1694)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1694)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1694
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_260773"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1694)
                     /locus_tag="VHD88_00015"
     CDS             complement(<1..>1694)
                     /locus_tag="VHD88_00015"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HVS20192.1"
                     /translation="ARIKGTVKVNTVAGATPELLPGARLTLTNRDLPAQVFKTMSDDG
                     GTFIFSDLPAAIFVLRVEGDGLPKVTREINLTSGATLTVEIVMTATLSESVTIRQEEG
                     LLSTSETTTSNTIRSETLNDTPLRAENFQSAALLTPGVVRSNDGLDHLKGARAGQSAY
                     TINGADITDPATGNLAFDLPLEAAANVRVEENPYSAEFGRLTGGATELETKSGSNKFN
                     FTAARFFPTFRHILGGPIDSFRPRVTFSGPIIRDRFFFLQSFEYRFTRARVPSLKAPA
                     DYSTFVAFNSFTQFDYKISKNHSAKLAMAFFPENDRFVGLNTFNPQSASPNVTRRGSL
                     FSLSEQAIFGDGSFLDSRLSFGANSFVVSGLRTRPLELLPEGNTGNYFADIRRQSRRL
                     QWQESYYAHPFQFYGEHSFKVGSEIDYKHTEGFLHADPILIRRPDNTLARRIEFVGTH
                     TLSRSLREYSAFAQDRWIITQKFTLDAGVRFDRDALARKSNVAPRLSFIYRPLKEPVV
                     IIRGGVGIFTDRAPLSVGYFAQLPGRVVTTYAEDGSSIIDGPRAFTHVRGSRLRNP"
BASE COUNT          383 a          451 c          507 g          353 t
ORIGIN      
        1 tacggattgc gcaaacgcga tcctctgacg tgcgtgaacg cgcgcgggcc gtcgattatc
       61 gaggacccgt cctcggcata cgtcgtgacg acgcgtccgg gaagttgggc gaagtagccg
      121 acggaaagcg gagcgcgatc ggtgaagata ccgaccccgc cacgaatgat caccacgggt
      181 tctttcagcg gccggtaaat gaacgataga cgcggcgcga cattgctctt ccgagccaga
      241 gcgtcacgat cgaaccttac gcctgcatca agggtgaact tttgcgtgat gatccatcga
      301 tcctgcgcga aagcgctgta ttcgcgcaaa ctgcgcgaga gcgtgtgggt gcccacgaat
      361 tctattcgcc gcgccagcgt attgtctggc cttctaatta ggattggatc cgcgtggagg
      421 aaaccttcgg tgtgcttgta atcgatctcg ctgccgacct tgaacgaatg ctcgccgtaa
      481 aactggaagg ggtgagcgta gtagctttct tgccactgaa gccgccgaga ctgtctgcga
      541 atgtcggcaa agtaatttcc ggtgttgcct tcgggcagca attcgagcgg acgcgttctc
      601 agtcctgaca cgacaaatga attagcccca aagctcaaac gagaatcaag aaacgaacca
      661 tcgccaaaaa ttgcctgctc agaaagcgag aagagcgagc cgcgccgcgt cacgttcggc
      721 gaagctgact gtggattgaa cgtgttgagt ccgacgaagc gatcattttc cggaaagaac
      781 gccatggcaa gtttcgcact atggttcttg ctgatcttgt aatcgaattg cgtgaacgaa
      841 ttgaaagcaa caaaagtcga atagtcggca ggagctttca ggctcggcac gcgagcgcgc
      901 gtgaagcggt actcaaaaga ctgcaaaaag aaaaaccgat cgcgaatgat gggcccgctg
      961 aaggtgaccc gcggccgaaa cgaatcgatt gggccaccca gtatgtgccg aaacgtggga
     1021 aagaaacgcg cggcggtgaa gttgaatttg ttactgccgc tttttgtttc caactcggtc
     1081 gcaccgccag tgagccggcc gaactcagcc gagtaaggat tttcttcgac gcgcacattc
     1141 gccgcggctt cgagcgggag gtcaaaggca aggttgccgg tagcgggatc ggtaatgtcg
     1201 gctccgttga tcgtgtatgc gctttggccg gcgcgcgcgc ctttcagatg gtcgagtccg
     1261 tcattgctgc gcacgacgcc gggagttagc aacgccgcgc tttgaaagtt ctcggctcgc
     1321 aggggcgtgt cattcaacgt ctcagagcga atggtattgc tggtcgtcgt ttccgaggtg
     1381 ctaagcaggc cttcttcctg acgaatggta accgactcgg aaagcgtcgc cgtcataacg
     1441 atctcgaccg tgagggtggc gcctgacgtc aggttgatct cacgcgtaac tttcggcaat
     1501 ccatcgcctt cgaccctcaa tacaaagatc gcggcgggca agtcgctaaa gataaaggtc
     1561 ccgccatcgt ccgacatggt cttgaaaacc tgtgcgggca gatcgcgatt agtcagagta
     1621 agccgcgccc cgggaagcaa ctcgggagtt gcgccggcaa ctgtgtttac tttgactgtg
     1681 cccttgatgc gggc
//
LOCUS       DASZZE010000003         2255 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_130415, whole genome shotgun sequence.
ACCESSION   DASZZE010000003 DASZZE010000000
VERSION     DASZZE010000003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2255)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2255)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2255
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_130415"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..792
                     /locus_tag="VHD88_00020"
     CDS             <1..792
                     /locus_tag="VHD88_00020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20193.1"
                     /translation="DNGVDLSTPAPESTTGKNAGKGAKGSAAVSPPPKKGKAKSPTTF
                     FDEYEDALKQSGAQYEKARPGKKYDLGGGAMLTVLGPTDPFFTTERMKAGGNETNANS
                     IVLRLDYGDFSMLLMGDAEAQTEERLLGKDLDLKANVIKVAHHGSKYATSEDFVKRVQ
                     PEAAIISDGAWNRYGHPAQAVLDRLKAANAKVYRTDLQGEVTITTKGKLDSGKLFEIK
                     TAKETKDDIWTGREAQKDDSSRSGFIAYGDFGPPPKGKPEKNRKP"
     gene            989..2023
                     /gene="purM"
                     /locus_tag="VHD88_00025"
     CDS             989..2023
                     /gene="purM"
                     /locus_tag="VHD88_00025"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004641 -
                     phosphoribosylformylglycinamidine cyclo-ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HVS20194.1"
                     /translation="MTKSTTYRDAGVDIDAANRATEKIKELARATFNARTLSEIGSFG
                     GMFDGAFPEMRAPVLVASADGVGTKLKIAFATGIHNTVGRDLVNHCVNDILVQGARPL
                     FFLDYIATGKLAPETIAGIVEGIANGCRVNGCVLLGGETAEMPGFYADGEYDVAGFIV
                     GVVDREKIIDGHAIAPGDVVLGLPSVGLHTNGYSLARKLFFEVAGYTPDAYLDELGES
                     VGAALLKPHVSYLRVLEGLLDNGVIKGLAHITGGGLLENIPRILPEGTSVEIERGSWP
                     VLPIFEFMQRIENIEHAETFRTFNMGVGMVIICASASVTEIEEHFEQRGNASYRIGHV
                     AGGNREVVIA"
     gene            2020..>2255
                     /locus_tag="VHD88_00030"
     CDS             2020..>2255
                     /locus_tag="VHD88_00030"
                     /inference="COORDINATES: protein motif:HMM:NF012760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016742 - hydroxymethyl-, formyl- and
                     related transferase activity [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formyltransferase family protein"
                     /protein_id="HVS20195.1"
                     /translation="MSSDFTQRRKDAKQETQRSRLAILISGHGSNMVALAEAVREGRV
                     PNAEIAVVISDQPNAAGLTKAKEHGIETLVIGRRG"
BASE COUNT          530 a          590 c          693 g          442 t
ORIGIN      
        1 gacaacggcg tcgatctttc cacgcccgca ccggaatcta cgacaggcaa gaacgctgga
       61 aaaggcgcga aaggatcagc cgcagtcagc ccacccccga agaagggcaa ggcgaagtca
      121 ccgacaacct tcttcgacga atacgaagat gctttgaagc agagtggtgc gcaatacgag
      181 aaggcgcggc cgggaaagaa atacgatctt ggcggcggtg ccatgctaac ggtgctcggg
      241 cccaccgatc cgttcttcac cacagagcgg atgaaggcgg gcggcaatga aacgaatgca
      301 aactcgatcg tcctgcgact tgattacggc gacttttcga tgctgttgat gggcgatgcc
      361 gaagcgcaaa ccgaagaacg cctgctcggc aaggatctcg atctgaaagc aaacgtgatc
      421 aaggtcgcgc atcacggatc gaagtacgca acttcagaag atttcgtgaa gcgcgtgcaa
      481 cccgaagccg cgatcatttc ggacggcgcg tggaatcgtt acggacatcc ggcccaagct
      541 gtgcttgatc gtctcaaagc cgcgaacgcg aaggtctatc gcacggactt gcaaggcgaa
      601 gtcacgatca ccacgaaagg caaactcgat tcgggcaagt tgttcgagat caaaactgca
      661 aaagagacga aggacgacat ctggacggga cgcgaagcgc agaaagacga ttcgtcgcgg
      721 tccggattca tcgcgtacgg agacttcgga ccgccgccaa agggcaagcc ggagaagaat
      781 aggaagccgt agtcgcggct ctgccgcctg atgtgcggta aggcttcgcc ttaccgggag
      841 gattcttttc tgattctttc gaggctgcgc ctcattagtg ctgaggcata gcctcagcaa
      901 ggtgtctgaa aagtatagcg ccggaaaggc agagcccttc cgcacatcgg gcggcaaagc
      961 cgctcacgcg ctggaatcca atgaccaagt gaccaagtcc acaacctatc gcgacgccgg
     1021 cgtggacatc gacgccgcga atcgcgcgac ggaaaagatc aaggaactcg cccgcgcgac
     1081 tttcaacgcg cgcacgctgt cagagattgg cagcttcggc ggcatgtttg atggcgcgtt
     1141 tcctgaaatg cgcgcgccgg tgctggtcgc atcggcggat ggtgtcggca cgaaactcaa
     1201 gatcgcgttt gcgactggca ttcacaacac cgtcggccgc gatctagtga atcactgtgt
     1261 caacgacatt ctggtgcagg gagcacgtcc gcttttcttt cttgattaca ttgcgacggg
     1321 aaagctggcg ccagaaacaa tcgccgggat cgttgaaggc atcgcgaacg gttgtcgcgt
     1381 gaatggttgc gtgttgcttg gcggcgagac ggcagagatg cccggctttt atgccgacgg
     1441 cgaatacgac gttgccggat ttatcgtcgg agttgtcgat cgcgaaaaga taatcgacgg
     1501 tcatgcgatc gcgccgggcg atgtcgtgct tggactgcct tcagtcggat tgcacacgaa
     1561 tggttactcg ctggcgcgca aacttttctt tgaagtcgcc ggctacacgc ctgacgccta
     1621 tctggatgag cttggcgaaa gtgtcggcgc ggcacttttg aaaccgcatg tgagttatct
     1681 gcgcgtgctc gaaggtctgc tcgacaacgg agtaattaag gggttggcgc acatcactgg
     1741 cggcggcttg ctcgagaaca ttccacggat tttaccggaa ggaacgagcg tggaaatcga
     1801 acgcggttcg tggccggtgc tgccgatctt tgagtttatg cagcgcatcg aaaacatcga
     1861 acacgctgag acgtttcgta ccttcaacat gggagtcggg atggtgatta tctgcgcttc
     1921 tgcttctgtt accgagatcg aagaacactt cgagcagcga ggtaatgctt cgtatcggat
     1981 tgggcacgtt gctggcggca atcgcgaggt tgttattgcg tgagcagtga tttcacgcaa
     2041 aggcgcaaag acgcgaagca agagacgcag cggtcgcgcc ttgctatctt aatctccgga
     2101 catggatcga acatggttgc gctcgccgaa gcagtgcgcg aggggcgggt cccgaatgct
     2161 gagattgccg tcgtcatcag cgatcaaccg aacgccgcgg gactcacgaa agcgaaagag
     2221 catggaattg aaacgttggt tatcggacgt cgcgg
//
LOCUS       DASZZE010000004         4916 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_65296, whole genome shotgun sequence.
ACCESSION   DASZZE010000004 DASZZE010000000
VERSION     DASZZE010000004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4916)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4916)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4916
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65296"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(203..1138)
                     /locus_tag="VHD88_00035"
     CDS             complement(203..1138)
                     /locus_tag="VHD88_00035"
                     /inference="COORDINATES: protein motif:HMM:NF012345.4"
                     /note="Members of this family of hydrolases with an active
                     site Cys residue belong to MEROPS family C26; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HVS20196.1"
                     /translation="MSQELQEAQLEQDTRVDATEPLPFPFNQQTFCRYEPIEKTIDAA
                     RVIVVDNLLRDEGDLSEVARKDWGREALTHLKRERQIASLALQNIVSNVERLVKQPTT
                     RVVHVSAVAEAVEDFHPDAIVLSGTLRDFDYYRPEILEGFARFIHKTRTPVLGICGGH
                     QLIGLSFGARVVTLDSREQQERRENRVTEYQYRFVRIVEPEDPIFQGIDNPQSGLWQD
                     YTKEGRILRVWQNHGLQLDGLPEDFKLLARSYLCKNQMMVRRADGQMIYSVQFHLEKS
                     FEDWNQSRTRWEHQNESRDGRILFENFLRLALERR"
     gene            complement(1166..1654)
                     /locus_tag="VHD88_00040"
     CDS             complement(1166..1654)
                     /locus_tag="VHD88_00040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20197.1"
                     /translation="MTSAAEYLEQVETQLGDAWLSRIYSERILKMRTRAYEFPPIPKK
                     AAPEIQHTLLGIELKVGQRRMLCPDLATARYLAIFARVGCKAVAIPYDITKISCLADE
                     LESSWHRMLLLSDSLAANRSSAFRARLRRLLIGKVREEIAAAGAGARMPAFKQSTKQR
                     VR"
     gene            complement(1689..3245)
                     /locus_tag="VHD88_00045"
     CDS             complement(1689..3245)
                     /locus_tag="VHD88_00045"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HVS20198.1"
                     /translation="MSLFALQAANPDVNLSLIAPELIVAVAGVVVMLVDAFARRAQHS
                     ITAILSIIALIAAGAASIWLGVSWAGPHEAFNGMIVLDELRLSFTLIVLFVSVLTILI
                     STVWIEEENLPAGEFHSLLLFATCGMMLMASAGDLVIVFIGLEILSIATYVLAGFRRT
                     DVRSNEASLKYFILGSFASAFLLYGIALIYGATATGPDSPGTTNIVAIAGRLDHSLYP
                     PLLLAGLAMLLVGFGFKIATAPFHVWTPDVYEGAPTPVTAFMAAGPKAAGFASFMRVF
                     LFGFPIATAAASTAGYAHKSWLGALAIMAALTMTIGNVVAIAQNNVKRMLAYSSIAHA
                     GYALVGFVAAGAATDAEQRSAALTAVAFYLLTYAIMNMGAFAVITLIARKDDRNNRVE
                     DYNGIGFISPVLAFSLSLFLLSLLGMPLTAGFMGKLMVFTAALRQGYVWLVVIGVLNA
                     AVSAYYYLRLIIVMFFRESRTEWTAPRVPSAVALALVITIAGVLYLGMFPDRVISALS
                     AKPNVTVHVR"
     gene            complement(3316..3876)
                     /locus_tag="VHD88_00050"
     CDS             complement(3316..3876)
                     /locus_tag="VHD88_00050"
                     /inference="COORDINATES: protein motif:HMM:NF012787.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HVS20199.1"
                     /translation="MRNPFFRFAVFGIVVALVFGAALRLVRAQTPSTPNEPQLKLQGI
                     DGRYYDVAEMRGSVVLVSFGATWCTPCSGELIALEELQREYQSKPVKSFWVSIESSSQ
                     ISDGGLKRYAREHKLTFPVLRDPTKTTFLQFSPRVRLPMIVFFDKKGHADASPHFGMS
                     SPPDNYKNAMRQRLDKLLATARSEVE"
     gene            complement(3889..>4916)
                     /locus_tag="VHD88_00055"
     CDS             complement(3889..>4916)
                     /locus_tag="VHD88_00055"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HVS20200.1"
                     /translation="ALYFIHQRATGIGTFDYVVLLDSMKLRFLEISPRAEFWLFLAFA
                     FAFCIKVPLWPLHTWLPDAHTEAPTAGSVILAGVLLKMGTYGLLRFNFGLFPNASKQF
                     APVMITLAVIGIIYGALVAMVQPDVKRLVAYSSVSHMGFVVLGLFSFTEQGMQGALYQ
                     MLNHGVSTGALFLFVGMIYERRHTRMISDFGGLARPMPWFSALFVIASLSSIGLPFLN
                     GFVGEFLIMLGTWTSTAVMHTWVVTMLAGTGVIWAAVYMLWMLQRVVFGTKTSEANAK
                     LLDLNAREVGLLVPLLALMFFMGVYPAPFLSRSRASIDAARQRIGAPHAAGSFEIARS
                     AADNNSR"
BASE COUNT         1166 a         1419 c         1356 g          975 t
ORIGIN      
        1 aacactcggg tcgccgccgc gaggctctcg cttgttagac atcttggctt cactagcagc
       61 ttacggttct ctctgtgcaa cctctgtggt tctctgtgcc tctgtggtga aattgcgtcg
      121 gaaagcattc accacagaga cacggagtta cacggagatc acacagagga gaacttctaa
      181 actcatttgt taagtattct tgttaacgac gctcaagcgc caagcgcagg aagttctcaa
      241 acagaatccg gccatcacgc gattcgttct gatgttccca acgtgtgcgg ctctggttcc
      301 agtcttcgaa agatttctcc agatgaaact gcacagagta aatcatctgg ccgtcagcgc
      361 gtctgaccat catctggttc ttgcacaggt atgaccttgc gaggagcttg aagtcttcgg
      421 gcagcccgtc gagttgcagg ccgtggtttt gccagacgcg caggatgcgt ccttctttcg
      481 tataatcctg ccacaagccc gattgaggat tgtcgatgcc ttgaaagatt ggatcttccg
      541 gttcgacgat gcgcacgaaa cgatactgat actcggttac gcgattctcg cgccgctcct
      601 gctgttcccg gctgtcaagc gtgacgacgc gcgcgccgaa actcaaccca atcagttgat
      661 gtccgccgca aatgccaagc acgggcgtgc gcgtcttgtg aatgaagcgg gcaaagcctt
      721 cgaggatttc cggccggtag taatcaaagt cgcgcagggt gccgctcagc acgattgcat
      781 ccggatgaaa atcttcaacc gcctcggcaa ctgcgctgac gtgcacaacg cgcgtggtgg
      841 gttgcttgac cagccgctcg acgttactga cgatgttctg cagagcgaga gacgcaattt
      901 gtcgctcgcg cttgagatgc gtgagcgcct cgcgtcccca atccttgcgc gcaacttccg
      961 acaggtcgcc ttcgtcgcgc agcagattat cgaccacgat cacgcgcgct gcgtcgatgg
     1021 ttttctcgat cggctcgtag cgacagaagg tttgttgatt gaacgggaag ggaagcggct
     1081 cagtcgcatc gactcgcgtg tcttgttcga gttgtgcttc ttgaagttcc tggctcatca
     1141 ggtcgtctgt agtttgattt tagtctcagc gaacgcgctg tttcgtgctc tgcttgaatg
     1201 ccggcatgcg tgcgcccgct ccggctgcgg caatttcctc tcgtacttta ccaatcaata
     1261 gcctgcgaag gcgagcgcgg aacgccgaac ttcgattggc cgcgaggctg tctgacaaca
     1321 gcagcatgcg atgccaggag ctctccagct cgtctgccag gcacgaaatc tttgtaatgt
     1381 cgtacggaat cgcgaccgct ttgcagccaa cccgcgcgaa aattgcgaga taacgagccg
     1441 tcgccagatc gggacagagc atccgtcgct ggccaacctt caactcgatg ccgagcaagg
     1501 tgtgctgaat ttccggcgcc gccttttttg gaatcggggg aaattcataa gcgcgtgtgc
     1561 gcatctttag aatgcgctcg gaataaatcc gagagagcca cgcatcgccc agttgagttt
     1621 ctacctgttc cagatactcc gcggctgaag tcatttgaaa tgataatggc gcagccgcca
     1681 ctttggattc aacgaacgtg taccgtgacg tttggcttcg cgctcagagc actaatcacg
     1741 cggtctggaa acattccgag atagaggacg ccggcgatcg taatcacgag cgccagcgcg
     1801 acggccgatg gcacgcgcgg cgcggtccac tccgtccgac tctcacggaa gaacatcacg
     1861 atgatcagac gtaagtagta gtaagccgac acggccgcgt tcagcacgcc aattacgacc
     1921 agccaaacgt aaccctgacg caacgccgcc gtgaaaacca tcagcttgcc catgaatccg
     1981 gcggtcagag gcatgcccag aaggcttagc aaaaacagcg agagcgagaa ggcgagcacc
     2041 ggagagatga agcctattcc gttgtaatct tcgactctgt tgttgcggtc gtccttgcga
     2101 gcaatcaacg tgatgacggc gaaagcgccc atgttcatga tcgcgtatgt gagcaaatag
     2161 aaagcgacgg cggtcagcgc ggcgcttcgc tgttccgcat cggtggctgc gcccgcggcc
     2221 acgaatccga ccagcgcgta acccgcatgc gcgatcgagg agtacgccag cattcgcttc
     2281 acgttgttct gcgcgatcgc cacgacattt cctatcgtca tcgtcagcgc ggccatgatc
     2341 gcgagcgcgc caagccaact cttgtgcgca tagcccgcag tgctcgcggc ggcggtcgcg
     2401 atcggaaagc caaaaagaaa gacgcgcatg aacgaagcga agcccgctgc tttcgggcct
     2461 gccgccatga aagccgtgac cggtgtgggc gcgccttcat aaacgtcagg cgtccagacg
     2521 tgaaaaggcg ccgtcgcgat cttgaatccg aagccaacca gaagcatcgc gaggcccgct
     2581 aataagagcg gaggataaag agaatgatcg agacgcccgg caatcgccac aatgttcgtg
     2641 gttcccggcg agtcgggacc ggtcgccgtc gcgccataaa tcaatgcgat gccgtaaagc
     2701 agaaacgccg aagcaaacga tccgagaatg aaatatttca gcgaagcttc gttcgagcgc
     2761 acatcggtgc gacggaaacc ggccagcaca taggttgcga tcgaaagaat ctcgaggccg
     2821 ataaaaacaa ttaccaggtc gcccgctgaa gccatcagca tcatgccgca agtagcgaac
     2881 aataaaagcg aatgaaactc gccggccggc aaattctctt cttcaatcca gaccgtcgaa
     2941 atcaaaatcg tgaggaccga gacaaacaga acaatcaaag tgaagctcag acgcagctcg
     3001 tcaagcacga tcatgccgtt gaatgcctcg tgcggccccg cccatgacac acccagccag
     3061 atcgaagcgg cgccagcagc gattagcgca atgattgaca ggatggcagt gatcgaatgt
     3121 tgagcgcgac gtgcgaacgc gtccaccagc attacgacga cgccggcgac agccacgatt
     3181 agttccggcg cgatcagtga cagattaacg tccgggttcg ctgcttgtaa tgcgaaaagt
     3241 gacattgtga aatgattcgt ctctccctga taattaagtc tctaattcac cgaggccggg
     3301 gatagcgcga cagactcatt cgacctccga gcgcgccgtc gccagcagct tatccagtcg
     3361 ctgccgcatg gcattcttat aattatcggg cggtgacgac atgccaaagt gcggcgacgc
     3421 gtctgcgtgt ccctttttgt cgaagaatac aatcatcggc agacgcacgc gcggcgagaa
     3481 ctgcagaaaa gtcgtcttgg tcggatcccg caggaccgga aatgtcagct tgtgttccct
     3541 ggcgtagcgt ttcagtccgc cgtcggaaat ctgactgcta ctttcaatgc tgacccagaa
     3601 agactttacc ggcttgctct gatattcccg ctgcagttct tccagcgcga tcagttcgcc
     3661 gctgcacggc gtgcaccagg ttgctccgaa ggacaccaac acgacgctgc cgcgcatctc
     3721 cgcgacatcg taatacctac cgtcgatgcc ttgcagtttc agctgcggtt cgttgggggt
     3781 gctgggtgtt tgcgcgcgaa ccaaacgaag cgctgcgcca aagaccaaag caacgacgat
     3841 cccgaaaacc gcgaaacgaa agaaagggtt tctcataaag ttaataggct atcgcgagtt
     3901 gttatccgct gcgctcctgg caatctcaaa cgagccggct gcatgcgggg ccccaattcg
     3961 ttggcgcgcg gcgtcgatgc tcgcgcgtga gcgacttaga aacggagccg ggtaaacgcc
     4021 catgaagaac atcaatgcga gcagcggcac cagcaatccc acttcacgcg cattcaaatc
     4081 caacagcttc gcgttggctt cgctcgtctt tgtgccgaac actacgcgct gcagcatcca
     4141 cagcatgtac accgccgccc aaatgacgcc cgtgcctgcg agcatcgtca cgacccatgt
     4201 atgcataacc gcggtcgatg tccaagtgcc gagcatgatc aagaattcac cgacaaaacc
     4261 gttcagaaac ggcagcccaa tcgacgagag cgatgcgatg acgaacagag cagaaaacca
     4321 gggcatcggt cgagccaacc cgccgaaatc gctgatcata cgcgtgtgtc gtcgttcgta
     4381 gatcattccc acgaacagaa acagcgcgcc ggtcgagacg ccgtgattca gcatttggta
     4441 cagcgcgcct tgcatgcctt gctcagtaaa cgaaaacaga ccgagtacga caaatcccat
     4501 gtggctgact gatgaataag cgaccaggcg tttgacgtcc ggctggacca tcgcgaccaa
     4561 cgcgccgtaa atgattccga tcaccgcgag tgtgatcatg acgggcgcga attgctttga
     4621 agcattcggg aacaatccga agttgaatcg cagcaacccg tacgtgccca ttttcaggag
     4681 cacaccggcg aggatcacag agccggcggt gggcgcttca gtgtgcgcgt cgggcagcca
     4741 cgtgtgcagc ggccacaaag gcaccttgat gcagaacgca aacgcgaacg cgaggaacaa
     4801 ccagaactct gcgcgcggcg atatttccag aaatcgcaac ttcatagaat ccagcagcac
     4861 gacataatcg aatgtcccga tgccggtcgc gcgctgatga ataaaataaa gcgcga
//
LOCUS       DASZZE010000005         4300 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_309788, whole genome shotgun sequence.
ACCESSION   DASZZE010000005 DASZZE010000000
VERSION     DASZZE010000005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4300)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4300)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4300
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_309788"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..272)
                     /locus_tag="VHD88_00060"
     CDS             complement(<1..272)
                     /locus_tag="VHD88_00060"
                     /inference="COORDINATES: protein motif:HMM:NF015168.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF255 domain-containing protein"
                     /protein_id="HVS20201.1"
                     /translation="MTEHKHTNSLIDETSPYLLQHAHNPVDWYAWGDEALAKARSEDK
                     PILLSIGYSACHWCHVMEHESFENEAIANLMNENFVNIKVDREERP"
     gene            complement(313..2598)
                     /locus_tag="VHD88_00065"
     CDS             complement(313..2598)
                     /locus_tag="VHD88_00065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20202.1"
                     /translation="MTCRLFYKIVPALTLMVALSLLIPRPSQACGPFFTVAIFVYTKH
                     PDMPLERFAAGQLGVLRPTYARSYLVAAYRNLIDRQLSDAEAKGLDSLWEDRLSSAWE
                     FHDDEFVKKWLNARKQVPGIAPPGEIHAFRNREKPHEYESFLNCQQDAFVNAEATLNE
                     RIKRFGAGSPAVSDWLSAQDIVFANCGSGKQIPEAARADQDALIRADRAYQIAASNFY
                     AGNFDEAKQQFDSIAHDQASPWHEMAGYLAARALLRKGSLAEKEEEGRPALAEAETRL
                     KAIVKDKALASSHHAAARLLNLVRLRLHPEEKLHELALALITKDASADFKQDVWDYTV
                     LLDKFVGDDEKTNKRAIPTSVKSEELTDWVLTLQDASAEASTHSFDRWEKTKATRWLL
                     VAMMKANAKQPNLEALLKAAAGIDHALPAFATVAFHSVRLLMESGRTSEARTMITGIP
                     ANDRQTLPASAVNVFLSQQMSLAQNLNEFLQSAQRAPAGFSDNSDGRELPEDEKELNA
                     TTKGSLLFFDLDSVNILNRGTPVGVLRDAARGTILAANLRSNVAQAAFMRAALLDDRD
                     NAAQAAVVLGTVNPELKESLAAYQRAATPEAKRFSVAYLSLKFPGLRPYVTAGVGRAT
                     PVNEIDSYRDNWWCAEPPTSMSGAAWQGEDETQKANARPLALPEFLKPSQSLAAKQLA
                     TLEALGTGPNYLCRTAIDWTNQNPTDPRAPEALHLAVKATRYGCTDKDTGRWSKAAFD
                     LLHRRYPNSSWAKETKYWFKG"
     gene            complement(2595..3404)
                     /locus_tag="VHD88_00070"
     CDS             complement(2595..3404)
                     /locus_tag="VHD88_00070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20203.1"
                     /translation="MRLILSRKFVGAVVCVAALLGSLALAFTKARSIAGKSATTTNAT
                     RAAQVPQVVLWAWERPVDLHFINPRQTGVAFLARTIRLHADEVVVRPRLQPLNLPEES
                     RVIAVARVEADPRSKPDLSSRQSEKLADAIAEMAQLPNVANVQIDFGATRSERDFYRG
                     VIIGVRQRLPEAVGLSITALASWCTDDDWLSDLPIDEAVPMLFRMGPDRQRVQNRIAS
                     GEEFAAEPCRGSYGISTDEPLRNLSIAKRLYVFNPDPWTENSVRSILESRK"
     gene            3638..>4300
                     /locus_tag="VHD88_00075"
     CDS             3638..>4300
                     /locus_tag="VHD88_00075"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HVS20204.1"
                     /translation="MERESLEIDAVFVGAGPANLSGALHLARLVAEHNDAVSSGRREG
                     KPLGEVEIAVIEKGSSVGAHILSGAVMDPRGLAELIPDFIEQGAPLESPVKEDHFLYL
                     TKKFAIRSPITPPPLVNHGYYIVSLNRLTAWLGEKCEAAGVNIFPEFSGAEMLYDDHD
                     RVVGVRTGDKGIDKEGKRKPNFEPGVALRAKVTVLGEGVRGSLTKKLIQRLGLDEGRE
                     PQV"
BASE COUNT          888 a         1221 c         1246 g          945 t
ORIGIN      
        1 tccggccgct cttcacgatc gactttgatg ttgacgaagt tttcgttcat caggttggcg
       61 atcgcttcgt tctcaaacga ttcgtgctcc atcacgtgac accagtggca cgccgagtaa
      121 cctatgctga gcaaaatcgg cttgtcctcg ctacgcgcct tcgcgagcgc ctcgtcgccc
      181 cacgcatacc aatcgacggg attgtgtgcg tgctgaagca ggtaagggct ggtctcgtca
      241 attaaagagt ttgtgtgctt gtgttcagtc accgcttgtt cctatatgca ccgtcgcctt
      301 cgtataagcc gattaacctt tgaaccagta tttcgtttcc ttcgcccacg agctgttggg
      361 ataacgtcga tgcagcagat cgaacgcggc tttcgaccaa cgacccgtgt ctttgtcggt
      421 gcaaccatag cgcgtcgcct tcacggcgag atgcaaagct tccggcgcgc gtgggtcggt
      481 gggattctga ttcgtccaat caatcgctgt gcggcacaga tagtttggtc cggtgccgag
      541 cgcctccagt gtcgccaact gttttgcggc tagagactgc gaaggtttca agaactccgg
      601 caacgcgaga ggtctggcgt tcgctttttg ggtttcgtct tcgccttgcc aggcagcgcc
      661 agacatcgat gtcggcggct cagcgcacca ccagttgtcg cgataactat cgatctcgtt
      721 taccggggtc gctcgcccca cgccggcagt gacgtacggc cgcagacccg gaaacttcag
      781 cgaaagataa gcgaccgaga accgtttggc ttctggcgta gctgcgcgtt gataagccgc
      841 cagtgattct ttcaactcag ggttgacagt gccgagtacg acggccgcct gtgctgcgtt
      901 gtcgcgatcg tcgagcagcg ccgcgcgcat gaacgcagcc tgagcgacat tgctgcgaag
      961 gtttgccgcg agaatcgtac cgcgggccgc atctcttagg acgccaaccg gcgtccccct
     1021 gttaagaatg ttcactgaat cgagatcgaa aaagagcagt gagcccttcg tcgtcgcgtt
     1081 gagttccttt tcatcttcgg gcagttcgcg gccatcgctg ttatcgctga agcccgcggg
     1141 cgcgcgctga gcgctttgca gaaattcgtt gagattctgt gcgagcgaca tttgttgact
     1201 caggaaaacg ttgactgcag acgcaggcag cgtctggcga tcatttgcgg gaatcccggt
     1261 gatcatcgta cgcgcttcgc tcgttcgacc gctttccatc agcagcctca cgctgtgaaa
     1321 ggcgaccgtc gcgaaggccg gcaaagcgtg atcgattccg gcagccgctt tcagcagcgc
     1381 ctcaagatta ggctgtttag cgttcgcttt catcatcgcc acgagcagcc accgagttgc
     1441 cttcgtcttt tcccatcgat caaacgaatg cgtcgaggct tcagcggaag cgtcctgcaa
     1501 agttagcacc caatcagtca gttcctccga tttgacgctg gttgggatcg ctcgcttgtt
     1561 cgttttttca tcatcgccga caaacttgtc cagcaagacg gtgtaatccc aaacgtcctg
     1621 tttgaaatca gcgcttgcgt ctttggtaat gagagcgagc gcgagttcgt gaagtttttc
     1681 ttccgggtgg aggcgcaggc gcacgaggtt cagcaaccgc gccgccgcat gatgcgacga
     1741 agccaatgcc ttatctttga cgatggcttt gagtcgcgtc tcagcttccg cgagcgccgg
     1801 ccgaccttcc tcttcttttt cagcaaggct gcctttgcgc aaaagcgcac gagccgcgag
     1861 atagccggcc atttcatgcc acggcgacgc ctgatcgtgc gcgatcgagt cgaactgctg
     1921 ctttgcttcg tcaaagttgc cggcataaaa attcgacgcc gcgatttgat aagcccgatc
     1981 agcgcgaatc agggcgtcct gatcggcgcg ggctgcttcg ggaatttgtt tgcctgagcc
     2041 gcagttggca aaaacgatgt cttgtgccga aagccaatcg ctcacggcag ggctgccggc
     2101 gccgaagcgt ttgattcttt cattcaaagt cgcctcggcg tttacaaacg cgtcctgctg
     2161 gcagttcaag aagctttcgt attcgtgcgg cttttcgcga ttgcgaaacg cgtgaatctc
     2221 gccgggcggc gcgatgccgg gaacttgttt ccgagcgttc agccacttct ttacaaactc
     2281 gtcatcatga aattcccacg cggaactcag acgatcctcc caaagactat ccagcccctt
     2341 cgcttccgcg tcgctaagtt ggcggtcgat tagattgcga tacgcggcga ccagataaga
     2401 gcgcgcgtag gtcggccgca agacgccaag ttgtcccgcg gcaaaacgtt cgagcggcat
     2461 atcgggatgc ttcgtataaa cgaaaatcgc aacagtgaaa aatggcccgc atgcttgcga
     2521 aggccgaggg atcagaagtg aaagcgcgac catcagcgtg agcgcgggaa cgattttgta
     2581 gaaaagtcgg caagtcattt tcttgactcc aggatcgagc gcaccgagtt ttcggtccac
     2641 gggtcggggt tgaaaacata aagtcgtttg gcgatggaca gattgcgcag cggctcgtct
     2701 gtcgaaattc cgtaactgcc gcggcaaggc tcggccgcga actcttcgcc tgaagcgatc
     2761 cgattttgca cccgttgcct gtcagggccc atgcgaaaca gcatcggcac cgcttcgtcg
     2821 attggaagat cggaaagcca atcatcgtcc gtgcaccacg aagcgagagc cgtgatcgaa
     2881 agcccgacag cttcgggcag acgctggcgc acgccgatga ttacgccgcg atagaagtcg
     2941 cgttcggatc gagtcgcgcc aaaatcgatt tggacattcg cgacgttcgg caattgagcc
     3001 atctctgcga tcgcgtctgc caacttctca ctctgtctgc ttgaaaggtc cggcttgctc
     3061 cgaggatcgg cttcgacgcg agccactgcg atgactcttg attcttcggg gagatttaac
     3121 ggctgaagcc gcggccgcac gacgacctca tcagcgtgaa ggcgaatcgt tcgcgcgaga
     3181 aaggccacgc cagtctgtcg aggattgatg aagtgcagat cgactggccg ctcccacgcc
     3241 cagagaacga cttgcggaac ttgagccgcg cgagtggcgt tggttgtcgt cgcagatttg
     3301 cctgcgatcg atcgcgcttt ggtaaacgca agggcgagcg aaccaagcaa cgctgcgaca
     3361 cagacaacgg caccgacgaa cttcctggac aggatcagtc tcataacaac aaggaaggcg
     3421 cccagtttac atcaacgatt caagcaaaag aagctcggct tgaagtggct agtggcgcag
     3481 cttgattttc tctgcgctac ctctgcgtac tctgcgcctc tgcggtgaat ggtggcgttt
     3541 gctcaccgcc gggacgcgga ggtcgcaaag gctgcgcagg ggaaagttcg tctgctatac
     3601 tccccaaaaa ctgaataccc attcattgca gagactaatg gaacgcgaaa gcctggaaat
     3661 agatgcggtc tttgtcggcg cggggccggc gaacctgagc ggcgcgctac acctggcgcg
     3721 gctcgtggcg gaacacaacg acgcggtcag cagcggcagg cgtgaaggca agccgctcgg
     3781 tgaagtcgaa atcgcggtga ttgagaaagg ctcgtccgtc ggcgcgcaca ttctttcggg
     3841 cgcggtcatg gatccccgcg gactcgctga actgattcct gactttatcg aacagggcgc
     3901 gccgctcgaa tcgcccgtca aggaagatca ttttctttac ctgacgaaaa agtttgcgat
     3961 tcgttcaccc atcacgccgc cgccgttggt caatcacggc tactacattg tctcgctcaa
     4021 tcgtctgacc gcttggcttg gagagaaatg cgaagctgcc ggcgtcaaca tctttcccga
     4081 attttctggc gccgaaatgc tctacgacga tcacgatcgc gtcgtcggcg tgcgcaccgg
     4141 cgacaaaggc atcgacaagg aagggaagcg caagccgaat ttcgaacccg gcgtggcctt
     4201 gcgagccaag gtgacggtgc tgggcgaagg cgttcgcgga tcgttgacga agaagctgat
     4261 tcagcggctt ggtctggacg aaggacgcga accgcaggtt
//
LOCUS       DASZZE010000006         4196 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_32705, whole genome shotgun sequence.
ACCESSION   DASZZE010000006 DASZZE010000000
VERSION     DASZZE010000006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4196)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4196)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4196
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32705"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            201..959
                     /locus_tag="VHD88_00080"
     CDS             201..959
                     /locus_tag="VHD88_00080"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: protein motif:HMM:TIGR00121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004077 - biotin-[acetyl-CoA-carboxylase]
                     ligase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HVS20205.1"
                     /translation="MEDKVQPTILRFDSIDSTNLEATRQAKAGAREGLCIVAREQTSG
                     RGRLDRSWQSPRDAGLYFSVVLRPQLEMKAWPLITLMAALAVSDALMKACNLRVDIKW
                     PNDVCVGEQKLCGILAETIETDAGPAAILGIGINLNGDGLPQDLHNVATSVEAVTRCK
                     HDGERVLEELVKAIGERYDLLQSPQGSEHTIREWCANSSYAIGRRVRVSLNSEAFEGT
                     TRGLESDGALRVETTDDKIRIVRAGDVTALRATE"
     gene            1063..1854
                     /locus_tag="VHD88_00085"
     CDS             1063..1854
                     /locus_tag="VHD88_00085"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: protein motif:HMM:NF009855.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HVS20206.1"
                     /translation="MLLVIDIGNTNTSLGVCDGETLAAHWRLTTARARTVDEWGVHAR
                     NLFALSGLDVKAIDAIAIASVVPPLNFTLKRMAEVYFQITPLFVDHSIDTGVPILYQP
                     PSDVGADRIVDAVAAIKKYGSPCIVVDFGTATTFDAINSKGEYLGGVITPGITISSDA
                     LFERAAKLPRVEIKRPLKVIGSSTVEAIQSGLYHGYVGLVDGILRKMIDELGGKVRVI
                     ATGGLAPLIATGSEFIEQVDETLTLEGLRLVYERNKRVRSLESGV"
     gene            1924..2640
                     /locus_tag="VHD88_00090"
     CDS             1924..2640
                     /locus_tag="VHD88_00090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20207.1"
                     /translation="MNYFSYFSEIEDTFIRRRGKHLLLSPMDWALIESWKERGVPLHV
                     ALRGIEHAFDSYESKKRKRSVKTLLYCQEEVEAQYAEWLESRVGSHAETQQKSAEDEK
                     SPFPRDVVLAHLARSREELTKLHDARQHTNEDGLSEALSRATALLTEIEADYNTAAQP
                     DTRKLEDSLTGIERMLDHAIREAMSDSEIESAEAEIASQLKPYKRHMDKTAFEQTREN
                     LLRKRLRDDAGVPRLSLFFL"
     gene            2650..3870
                     /locus_tag="VHD88_00095"
     CDS             2650..3870
                     /locus_tag="VHD88_00095"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF017743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent RNA methyltransferase"
                     /protein_id="HVS20208.1"
                     /translation="MEVTIERILPGGLGLAHADGRPVMVALAAPGDRVHVQVDLVKGN
                     ISFASIKEIIEPSRVRVAPPCPYFGRCGGCDFQQLSYEAQLAAKVEIIKDCLHRIGRI
                     ENIPDFQITPAPNPWHYRTRAQWQYDSIRKRLGYFESGSRRVCDVAECAVLAPELQQT
                     LESLREGLQDGSLPDDARDFRAVVGDEGVSLAPDRVRSPTVREGNVSKVECEETHEVT
                     RTIHGETYRFNAESFFQANYALLPQLIDAALKEASGNTAVELYCGVGLFTVPLARRFS
                     RVVGVEADAAATRFARANLTNANLMNAEIADHDVGDWLEHYADGCLQEREESAQLDFL
                     LLDPPRTGAESRVIAGIMDLRPRRISYVSCDPATLARDLKKLIAGGYTLDSVAAFDMF
                     PQTHHVETVVHLSG"
     gene            3881..>4196
                     /locus_tag="VHD88_00100"
     CDS             3881..>4196
                     /locus_tag="VHD88_00100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20209.1"
                     /translation="MVDLPRTRFSSSPLTVIAAALSLGIIASHSPALKFGTAIATIST
                     IGFISTVLSVLLVSKHKLGPAIACVVFAVFCAGFVLSLIDSRPTAPNRIARLYEEGAI
                     TAG"
BASE COUNT          909 a         1148 c         1230 g          909 t
ORIGIN      
        1 gtgcggcgag attgcctaca agcacctcgg tcagacgaac ctccaggcag tgtttccagg
       61 ctatgcctcg agtacttcga agttccgcgg tgtgcttgga taaaagattc gaattgagcc
      121 gcggataaac gcagatacag cgaggtcact gtgtctgcgt ttctttttgc gcagactttc
      181 gtctatgctg catcgagtcg atggaagata aggttcaacc gacgattctc cgctttgatt
      241 cgatcgattc aaccaatctc gaagcgacgc gacaggcgaa agcgggtgcg cgtgaaggtc
      301 tctgcatcgt ggcgcgcgag cagacgagcg gacgcggacg gctggatcgc agttggcaat
      361 cgccgagaga tgccgggctc tatttcagcg ttgttctgcg gccgcaactt gagatgaagg
      421 cgtggccgct gattacgttg atggccgcgc ttgccgtttc cgatgccctg atgaaagcat
      481 gcaatttgcg cgtggatatc aaatggccga atgacgtttg cgtcggcgag caaaagctgt
      541 gcggcatcct ggcggagacg atagaaaccg atgctggtcc tgctgcgatc ctgggcatcg
      601 ggatcaatct gaacggcgac ggcttgcctc aggatcttca caacgtggcc acgtccgtgg
      661 aagccgtgac tcgttgcaag catgacggtg aacgagtctt ggaagagcta gtcaaagcga
      721 tcggcgagcg atacgatctg ctgcaaagcc cgcaaggatc cgagcacacg attcgcgagt
      781 ggtgcgcgaa ttcgtcctac gccatcggca gacgcgtgcg cgtgtcgctc aacagcgaag
      841 cgtttgaagg gactacgcgc gggcttgaaa gcgacggcgc gctgcgtgta gaaactactg
      901 acgacaagat caggatcgtt cgcgcaggag atgtaacagc gttgcgcgcg acggaatagg
      961 gtttaggggt ttgggtgtag ggtgtagagc gctgcgaaat tggtagtcga cttttgaact
     1021 tgatccaaca ccctacaccc aaaacccaac accctctgct ttatgctttt agtaatcgac
     1081 atcggcaaca ccaacacgtc gctcggcgtg tgtgacggcg agacgttagc cgcgcattgg
     1141 cgtttgacga ccgcgcgcgc gcgcacagtt gacgaatggg gcgtacatgc ccgcaatctg
     1201 ttcgcgctgt caggtctgga tgtcaaagcc atcgacgcga tcgcgatcgc ttcggttgtg
     1261 ccgccactga atttcacact caagcgcatg gctgaagtct attttcagat cacgccactg
     1321 ttcgtcgatc actcgatcga cacgggcgtg ccgattcttt accagccgcc gtccgacgtt
     1381 ggcgccgatc ggatcgtcga tgcggtcgcc gcgatcaaga aatacggttc gccgtgcatt
     1441 gtcgtggatt tcggcaccgc cacgacgttc gacgcaatca attcaaaggg cgagtacctc
     1501 ggcggcgtga tcacgcccgg catcacgatc tcttccgatg cgctgttcga acgcgcggcg
     1561 aaactgcccc gggtggaaat caaacgcccg ctgaaggtca tcggctcttc gacggttgaa
     1621 gcgatccagt caggtctcta tcacggttac gttggcttgg ttgacggcat cctgcgcaag
     1681 atgattgatg aactcggcgg gaaggtgcgc gtaatcgcca ccggcggact cgcaccgcta
     1741 atcgcgaccg gctcagagtt catcgagcaa gttgatgaga cgttgacatt ggaaggattg
     1801 cggttggttt acgaacgaaa taagagagtc cggagtctgg agtctggagt ctagaagtca
     1861 ccgcgcttat tcattgacgc ttttgggtca aggagactcc agactccaga ctccagactc
     1921 gatttgaatt atttcagcta cttctccgaa atcgaagaca cttttattcg ccgccgtggc
     1981 aagcatctct tgctcagccc gatggattgg gcgttgattg aaagctggaa agaacgcggc
     2041 gtgcccttgc acgtggcgct gcgcgggatc gaacacgcct tcgattctta cgagtcaaag
     2101 aaacgcaaac gcagcgtgaa gacgctgcta tattgccagg aagaagtcga agcgcagtat
     2161 gccgagtggc tggaatcgcg ggttggaagc cacgcagaga cacaacagaa aagcgcggaa
     2221 gatgagaagt cgccgtttcc gcgtgacgtt gttctcgctc atctggcgcg ctcgcgcgaa
     2281 gagttgacaa agctacacga cgcccgccaa cacacgaacg aagatggact gagcgaggcc
     2341 ttgtctcgcg cgacagcatt gttgaccgaa atcgaagccg attacaacac tgctgcacag
     2401 ccagacacgc gcaaactgga agactctttg acgggtattg agcgaatgct cgatcacgcg
     2461 attcgtgaag cgatgtctga tagtgaaatc gaatcagccg aggctgaaat cgcatcccaa
     2521 ttgaaacctt acaagcgtca catggacaag acggcgtttg aacaaacacg agagaacctt
     2581 ttgcgcaagc gcctgcgcga tgacgcaggc gttccccgac tcagtctgtt tttcctctaa
     2641 gctgcgaaca tggaagtaac catcgagcgc attctgcccg gcggcttagg tctcgcgcac
     2701 gccgatgggc gcccagtaat ggtcgcgctg gcggcgccgg gcgatcgcgt gcacgtgcag
     2761 gtcgatctag tcaaaggcaa tatttctttc gcgtccatta aggagataat cgagccgtcg
     2821 cgcgttcgtg tcgcgccgcc ttgtccttac tttggccgct gcggcggttg cgactttcaa
     2881 cagttgagtt acgaagcaca gttagctgcg aaagttgaga tcatcaaaga ctgtttgcac
     2941 cggatcggtc gcatcgaaaa cattcctgac tttcaaatca cgcccgcgcc gaatccctgg
     3001 cactaccgca cgcgtgcgca gtggcagtat gactcgataa gaaaacggct cgggtatttc
     3061 gagagcggtt cgcgtcgcgt ctgtgatgtg gcagagtgcg cggtgctcgc gcctgagttg
     3121 caacagacgc tggagagtct gcgcgaggga ttgcaagacg gttcgcttcc cgacgatgcg
     3181 cgcgactttc gcgccgtcgt tggtgacgaa ggagtgtcgc tcgcgcccga tcgtgtcaga
     3241 agcccgaccg ttagggaggg caatgtttca aaggtggagt gcgaagagac acacgaagtc
     3301 acccgcacta ttcacggcga gacctaccgc ttcaatgctg aatcgttctt ccaggcgaac
     3361 tatgctttgc tgccgcagtt gatcgatgcc gcgctgaagg aagccagcgg gaataccgcg
     3421 gtggaactct attgcggtgt aggactgttc acggttccgc tggcgcggcg attctcacgc
     3481 gtcgtcggcg tggaagctga cgcggcggca acgcgtttcg cccgcgccaa cctgacaaac
     3541 gcaaatttga tgaatgctga gatcgctgat cacgacgtgg gcgattggct tgagcactat
     3601 gcggacggct gccttcaaga gcgtgaagaa tccgctcaac tggatttctt gttgctagat
     3661 ccgccgcgca caggcgctga gtcacgcgtg atcgcgggaa tcatggacct aagaccgcga
     3721 cgcatcagct acgtttcatg cgaccccgct acactcgcac gcgatctgaa aaagctgatc
     3781 gcgggcggct acactcttga ctctgtcgcc gcatttgata tgttcccgca gacacatcac
     3841 gtcgaaacgg tcgttcatct cagcggttaa cgcagaagat atggtcgatc tcccacgcac
     3901 tcgtttttca tccagccctt tgaccgtaat tgcggccgcg ctctctcttg gcatcatcgc
     3961 gagtcattct cccgccctta agtttggaac tgcgatcgcg accatcagca caatcggttt
     4021 catctctacc gtgctctcag tattgctcgt ttcaaagcac aagcttggtc cggcgatcgc
     4081 ttgtgtcgtc ttcgcagtct tttgcgcggg gtttgtcctt tcgctgattg attcgcgccc
     4141 caccgcgccg aatcgcatcg cgcgcttgta tgaagaagga gccatcacgg cgggcg
//
LOCUS       DASZZE010000007         4518 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_48978, whole genome shotgun sequence.
ACCESSION   DASZZE010000007 DASZZE010000000
VERSION     DASZZE010000007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4518
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48978"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1807
                     /locus_tag="VHD88_00105"
     CDS             <1..1807
                     /locus_tag="VHD88_00105"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HVS20210.1"
                     /translation="QERHVLRANPNASPVERPLLTRESRPKSLCSNLSLQKMSRSRIN
                     QTYVWIVIAAGIAVMVFSAGHLSPKQIDIRFLLLALVTVCIGPRLSIQIPRVKAHISV
                     SDTFIFLALLLFGGEAAILLATLEALCSSVHIGSKARTHLFNACVMACATFLTVWTLR
                     LSFGETVTWHDVYSPNYLVALCVMAVVQYLGNSILVATSAALKADEPLWPTWRKNFLW
                     TSITYLAGASAAGIIARFIGNVGFFAFSATIPIIAILYFTYWTYMKNVEGAATQAEQA
                     RLHVEELNRHLAEQKRIGKALRETEAHFRNAFDYAAIGMALVSPQGAWLRVNRSLCEL
                     IGYSEDELLASNFQAVTHTDDVDNDLANLYRLMQGETPHFQVEKRYVHKFGQVVWALN
                     SVSLVRDADDNAVHFIFQIQDITERKRAEAALQSLSLVDELTGLYNRRGFLAVTEQHL
                     AAIQRTEKIPVIVYADLDGLKGINDSLGHHEGDRALVKTAELFKETCRSSDIIARLGG
                     DEFVVLAAIGPEESVESLMLRLQEKFSASNSVRNRLYDLSISIGVAHFDAEQDCSVVE
                     LMARADRAMYEDKRRKRSRDVIAPEFARPRIEAVA"
     gene            1838..3073
                     /locus_tag="VHD88_00110"
     CDS             1838..3073
                     /locus_tag="VHD88_00110"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HVS20211.1"
                     /translation="MQSFQNPSLENSTTSRWRTLALLALAELLGMSLWFSGSAVVPAL
                     TKEWNLSGSAASWLTLSVQLGFVAGTLLSALFNLPDIISPRHLFTLTAIAGAIVNGAF
                     GFFAHDATLGILLRFLTGMFLAGVYPPAMKILATWFRYGRGLALGVLVGALTLGKATP
                     YLVNGIGSANWRHNVMFVSLLAVVGGLVVLFFVGDGPYALPAARFDWKQMAKAFRNRG
                     VRLANFGYFGHMWELYAMWTWIPFMIRASLSARKSDPSLAEVASFLVIGCGAAGCVIA
                     GLIADRVGRTIVTSWAMIISGGCCLVIGLFFGANPILLLILAAIWGASVVADSAQFSA
                     CVTELGDPQYIGTALTIQTCLGFLLTTISIELIPRFVNLVGWRYAFMILAPGPLFGVI
                     SMMRLRRLPEATKIAHGKK"
     gene            3226..>4518
                     /locus_tag="VHD88_00115"
     CDS             3226..>4518
                     /locus_tag="VHD88_00115"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HVS20212.1"
                     /translation="MIGAKLGNYRILEKIGAGGQGTVYKATDTKLGRTVVIKVLPPEL
                     TVKEANLKRFEREARLASALDHPNICTIFDLNEIGGVNFIAMQFVEGQNVRQLVNGRP
                     LDLLSALSIAVQVADALAAAHARGIIHRDIKAGNVMVTPSGQAKILDFGLAKLLDSEG
                     AGPGGIHHTDLTEFGIPYGTATYAAPEQARGERVDARADIFSTGVLLYEMLTGTWPFQ
                     GKTSVDVRHAVLHEEPKPLDEARPGQTPPRLQTILDRALEKDPKGRYQKAAELRDDLR
                     AVMRDVESGAPTGFNELITPVAPRHLSGTGRVGRALRWLRGERTSQQPVSTSDRPVHE
                     TPVTSVGDRERKSVAILPFKNLSNDPQSSFYEFSLADAVITELARVRSLVVRPSSEIV
                     KYQGVQVDPRQAGREMSVAAVLAAGFLRAGDRIRVTAQL"
BASE COUNT          917 a         1293 c         1318 g          990 t
ORIGIN      
        1 gcaggaacgc catgttttac gggcaaatcc gaacgcctcg ccagtggaac gcccgttgct
       61 aacgcgcgag agtaggccga agagcctttg ctccaacctc tccctgcaaa aaatgagtcg
      121 cagccgcata aatcaaacgt acgtttggat cgtaatcgcc gcgggcatcg cggtgatggt
      181 gttctctgcc gggcatctgt ctcccaaaca aatcgacata cggttcctgc tgctggcgct
      241 cgtgactgtt tgcatcggcc cgcgattgag cattcagatc ccgcgcgtaa aagcgcacat
      301 ttccgtttcc gacactttca tttttctagc gttgctactc ttcggcggcg aggcggccat
      361 cctgctggcc acgttagaag cactgtgctc gtcggtgcac atcggcagca aagcacgcac
      421 acatctcttc aacgcctgtg tcatggcgtg cgcgacgttc ctcacggtct ggacgttgcg
      481 actgagcttt ggcgaaacgg taacctggca cgacgtctat tccccgaact acctggtcgc
      541 gctttgcgtg atggcggtgg ttcagtatct cggcaattca attctggtag ccacgagcgc
      601 ggcgttgaag gctgacgagc cactgtggcc cacctggcga aagaactttc tgtggacgtc
      661 gatcacttac ctggcgggcg cttcagccgc gggcatcatc gcacgcttca tcggcaacgt
      721 cggtttcttt gctttcagcg ccacgattcc gatcatcgcc atcctttact ttacgtactg
      781 gacttacatg aagaacgtcg agggcgccgc cacacaggcc gaacaggcgc gcctgcacgt
      841 tgaggaactc aatcgccacc tcgcggagca gaagcgcatc ggcaaagcgc tgcgcgaaac
      901 tgaagcgcac tttcggaatg cgtttgatta cgcggccatc ggcatggcgc tcgtttcacc
      961 acagggcgcg tggctgcgcg tgaaccgttc gctgtgtgaa ctcatcggat acagcgaaga
     1021 cgagttgctc gcgtcaaact ttcaggccgt cacgcacacc gatgacgtgg acaacgatct
     1081 ggcgaacctc taccgcttga tgcaaggcga aacgccgcac tttcaggtcg agaaacgata
     1141 cgtgcacaaa ttcggtcagg tcgtgtgggc actcaacagc gtttcgctgg tccgcgacgc
     1201 cgacgacaac gcagtgcatt ttatttttca gattcaggac atcactgagc gcaagcgagc
     1261 ggaagccgcg ctgcaaagct tgtcgctcgt agatgaactc accggtcttt acaaccgccg
     1321 tggttttctg gccgtgactg agcagcatct ggccgcgatt cagcgcaccg aaaaaatacc
     1381 ggtgatcgtt tacgccgacc tcgacggcct gaagggaatc aacgactcgc tgggccatca
     1441 cgaaggcgac cgcgctctgg ttaagaccgc ggaactcttc aaagaaactt gccgcagctc
     1501 ggacatcatt gcgcgactcg gtggcgacga gttcgtcgtc ctggccgcga ttggccccga
     1561 agaaagcgtc gagtcgctca tgttgcgtct gcaagaaaag ttcagcgcca gcaactccgt
     1621 gcggaatcgg ctttacgatc tttcgatcag catcggcgtc gcccactttg acgcggaaca
     1681 agattgctca gtcgtggagc taatggcccg cgcggatcga gccatgtacg aagacaagcg
     1741 cagaaagcgt tcgcgcgacg tgattgcgcc agaatttgcc aggcctcgca ttgaagcagt
     1801 cgcgtaatcg cgcgctcttt acgctacaat ctcccgcttg caaagtttcc agaatccttc
     1861 attagagaat tcgaccacat cgcgctggcg cacgctcgcg ttgctggcgc tcgctgaact
     1921 gctcggcatg tcgctctggt tcagcggctc agcggttgtg cccgcgctga ccaaagaatg
     1981 gaacctcagc ggatcagcgg cgagctggct cacgctttcc gttcaactcg gttttgttgc
     2041 cggcacgctg ctcagcgcgc tcttcaactt accggacatc atcagcccac gtcatctttt
     2101 tacgttgacg gcaatcgccg gcgcgatcgt caatggcgcg ttcggattct ttgcgcatga
     2161 tgcaacgctg ggaattctgc tgcgcttttt gacaggaatg tttctcgccg gagtctatcc
     2221 gccggcaatg aagattttgg ccacgtggtt tcgctacggt cgcggattgg ctctcggcgt
     2281 tctggtcggc gcgctcacgc tcggcaaagc gacgccgtat ctagtcaacg gaatcggcag
     2341 cgcgaactgg cggcacaacg tgatgtttgt ttcgctgttg gcggttgtcg gcggtctcgt
     2401 ggttttgttc tttgtcggcg acggcccata cgcgttgccg gccgcgaggt ttgattggaa
     2461 gcaaatggcg aaagcatttc gcaaccgcgg cgtgcgcctg gcgaacttcg gttacttcgg
     2521 tcacatgtgg gaactctacg cgatgtggac gtggattccg ttcatgattc gcgccagcct
     2581 gtccgcgcgc aagagcgatc catcgctcgc tgaagtcgct tcgttcctcg tgatcggttg
     2641 tggcgcagcg ggttgcgtca tcgcgggttt gatcgcggat cgagtcgggc gaaccattgt
     2701 gacttcgtgg gcgatgataa tcagcggcgg ttgctgtctg gtgattggtt tgttctttgg
     2761 agcgaatccg attctgcttt taatcctcgc ggcaatctgg ggagcaagtg tcgtcgcgga
     2821 ttccgcgcag ttctcggcct gcgtaaccga gcttggcgat ccacaataca tcggcacggc
     2881 tctgacgatc caaacatgtc ttggttttct attgacgacg atctcgatcg agttgattcc
     2941 tcgcttcgtt aatctcgtcg gctggcgata tgcgttcatg attcttgcgc cggggccact
     3001 gttcggtgtg atttcaatga tgagattacg aaggcttcca gaagctacga agattgccca
     3061 cgggaaaaaa tgaactgcga aggttgccct cccttacggt cgggcttctg acactatcga
     3121 ggcccagagg tgtcagaagc ccgcgcgtaa gcaagggcaa attaagtttc ctcaaacaac
     3181 catcatttgc agtcatcgcg ctgcgggagt ttaatagacc cgaaaatgat cggcgcgaaa
     3241 cttgggaatt atcgaatcct agaaaagatt ggcgccggcg gtcaaggaac agtttacaaa
     3301 gcgaccgaca cgaaacttgg acggacggtc gtgatcaagg ttttaccgcc ggaactaacg
     3361 gtcaaagaag ccaacctcaa acgttttgag cgtgaagcgc gactcgcttc ggcgctcgat
     3421 cacccgaaca tctgcaccat tttcgatctc aacgagatcg gcggcgtcaa cttcatcgcg
     3481 atgcagttcg tcgaaggcca gaacgtgcgc cagctcgtca atggccggcc gctcgatctg
     3541 ttgagcgcgc tctcgattgc cgtgcaagtc gccgatgcgc tggccgccgc gcacgcgcgc
     3601 ggcatcattc accgcgacat caaagcgggc aacgtgatgg tgacaccttc gggccaggca
     3661 aagattctcg attttggatt ggcaaaactc ttggatagcg aaggcgccgg tcccggcgga
     3721 attcatcaca ccgatctaac agagtttggg attccgtacg ggacggcgac gtatgcggcg
     3781 cccgagcaag cacgcggtga gcgtgtcgat gcgcgcgcgg atattttttc aactggcgtg
     3841 ctgctttacg aaatgcttac aggcacgtgg ccgtttcagg gaaagacaag cgttgacgta
     3901 cgtcacgcag tgcttcacga agaaccgaag cctttggatg aagcgcgacc gggccagacg
     3961 ccgccgcgtt tgcaaacaat tctcgaccgc gcgctggaaa aagatccaaa ggggcgttac
     4021 cagaaagctg ctgagttgcg tgacgatttg cgcgcggtga tgcgcgacgt tgaatcgggc
     4081 gcgccgacgg gattcaacga actgatcaca cctgtcgcgc cgcgtcatct ttcgggaacc
     4141 gggcgcgtgg ggcgcgcgct gcgctggctg cgcggcgaac gaacttcaca acagcccgtg
     4201 tccacatcag atcgtccggt gcacgagaca ccagtgacga gcgtcgggga tcgcgaacgc
     4261 aagagcgtcg ctattcttcc cttcaagaac ctgagcaacg atccgcagtc gagcttttac
     4321 gaattctctt tggcggacgc agtcattacg gaactcgcgc gcgtgcgctc gctagtggtg
     4381 cggccttcgt cggaaatcgt gaagtaccag ggtgtgcagg tcgatccgcg ccaggccggg
     4441 cgtgaaatga gtgtcgccgc agtcctggca gccggcttcc tgcgcgccgg cgatcgcata
     4501 cgcgttaccg cgcaactg
//
LOCUS       DASZZE010000008         1860 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_277295, whole genome shotgun sequence.
ACCESSION   DASZZE010000008 DASZZE010000000
VERSION     DASZZE010000008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1860)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1860)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1860
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277295"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1457)
                     /locus_tag="VHD88_00120"
     CDS             complement(<1..1457)
                     /locus_tag="VHD88_00120"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HVS20213.1"
                     /translation="MSLIALQATNPDINLTLIAPELIIGVAGVLVMMVDAFARRGQRW
                     LTGGLSIVALIAAGAASIWLGAGWRGARSAFNGMIVLDELRLSFTLIFVIVSILTILI
                     AAVWIDIEKLPAGEFHALLLFATCGMMLMASAGDLVIVFLGLEILSIATYVMAGFRRT
                     DVRSNESSLKYFILGSFASAFLLYGIALIYGATATETLPGTTNIAAIAGRLNHSLYPP
                     LLLAGAAMLLVGFGFKIATAPFHVWTPDVYEGAPTPVTAFMAAGPKAAGFASFMRVFV
                     FGFPIATAVASTGGYAHKSWLGALAIMAALTMSVGNVAAIVQNNVKRMLAYSSIAHAG
                     YALVGFVAAGAATDAEQRSAALTSVAFYLLTYALMNMGAFAIVTVIARGNDRHTEVED
                     YNGIGFLSPVLAFSLSLFLLSLLGMPLTAGFMGKVMVFTTAVRQGYVWLVVIGVLNTA
                     VSAYYYLRLIIVMFFRERNAPWDAPRLPASVALALV"
     gene            complement(1468..>1860)
                     /locus_tag="VHD88_00125"
     CDS             complement(1468..>1860)
                     /locus_tag="VHD88_00125"
                     /inference="COORDINATES: protein motif:HMM:NF012787.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HVS20214.1"
                     /translation="NVVLVSFGATWCAPCSTELRALEELLVEYRGKPVKFYWVSVESP
                     DQVTNGALKQYAKERKVSFPVLRDTARMVFSQFSPRVRLPMIVLLGKDGRVDAPVQFG
                     MRSPADAYKADMRARLNKLLAAPADSDR"
BASE COUNT          473 a          560 c          509 g          318 t
ORIGIN      
        1 accagcgcga gcgcgacact ggcgggcagg cgaggcgcgt cccacggcgc gtttcgctcg
       61 cggaagaaca tgacgatgat tagccgcaga taatagtacg ccgacacggc ggtgttcaga
      121 acgccaatca cgaccagcca gacgtaaccc tgacgcacgg ctgtagtgaa caccattact
      181 ttacccataa atcccgcagt caaaggcatc cccaaaaggc tcaacaagaa caacgaaagc
      241 gaaaaggcca gtaccggaga cagaaagccg atgccgttgt agtcttcgac ttcagtatgg
      301 cgatcgttgc cgcgggcgat cacagtgacg atcgcaaagg cgcccatatt catcaacgcg
      361 taggttagca agtagaatgc taccgaggtc aaagcagcac ttctctgttc cgcatcagtg
      421 gccgcccccg cagctacgaa tccgaccagg gcatacccgg catgggcgat cgaagagtag
      481 gccagcattc gtttgacgtt gttctgcacg atcgcagcaa cgttgccgac gctcatcgtc
      541 agcgccgcca taatagccag cgcacccaac cagcttttgt gggcatagcc gccggtgctt
      601 gcaaccgcgg tcgcgatggg aaagccaaag acaaaaacgc gcatgaacga tgcgaagccc
      661 gcagcctttg ggccggcggc cataaaagca gttaccggag taggtgcgcc ttcgtaaacg
      721 tcaggcgtcc acacatggaa gggagccgtg gcgatcttga acccgaaacc caccaggagc
      781 atcgcggctc ccgccaacaa taacggcgga tacaacgaat gattcaagcg tccggcgatc
      841 gcagcaatgt tcgtcgtgcc gggcagagtc tcagttgccg tagctccata gatcagcgcg
      901 ataccataga gaaggaacgc cgaagcaaac gaaccaagaa tgaaatactt caaggatgat
      961 tcgttcgagc gaacatcggt gcgccgaaac cccgccatca cataagtcgc aatcgaaaga
     1021 atttcgaggc cgagaaaaac aatcaccagg tctccggccg aggccatcag catcatcccg
     1081 cacgtggcga acaatagcag ggcatggaac tcgccggccg gcaacttttc tatgtcgatc
     1141 caaactgcgg caatcaggat ggtgagaatt gaaacgatta caaagatcaa agtgaagctc
     1201 aaacgcaact cgtccagcac gatcatgccg ttgaaggcac tgcgcgcgcc ccgccacccg
     1261 gcccccagcc agattgaagc ggcgcccgcg gcaatcagcg ccacgattga tagacccccg
     1321 gtcagccagc gctggccgcg gcgcgcgaag gcgtcgacca tcatgacgag cacacccgcg
     1381 acaccgataa ttagctctgg cgcgatgagc gtgagattaa tatcggggtt ggttgcttga
     1441 agtgcgatca gcgacatcta tttccaatca gcgatccgaa tcggccggag ctgccagtag
     1501 tttgttaagc cgcgcgcgca tgtcagcttt gtaagcgtcc gccggcgagc gcatgccaaa
     1561 ttgcaccggc gcgtcgactc gtccgtcttt gcccagtaga acgatcatcg gcagacgcac
     1621 gcgcggagaa aactgcgaga aaaccatcct ggctgtgtcg cgcaaaaccg ggaagcttac
     1681 ttttcgctct ttcgcgtact gcttcaacgc gccgttggta acttgatccg ggctttcaac
     1741 gctgacccag taaaacttta ccggctttcc gcgatactca accaggagtt cttccagtgc
     1801 ccgcaactcg gtgctgcacg gcgcgcacca cgtggcgccg aaggaaacca gcactacgtt
//
LOCUS       DASZZE010000009         5874 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_114311, whole genome shotgun sequence.
ACCESSION   DASZZE010000009 DASZZE010000000
VERSION     DASZZE010000009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5874)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5874)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5874
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114311"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(178..609)
                     /locus_tag="VHD88_00130"
     CDS             complement(178..609)
                     /locus_tag="VHD88_00130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20215.1"
                     /translation="MFILLVVGYWIRGTFFPKASGSVYWLSFVASIIGLRLGVYGGHI
                     VASVVNKVAQAHKKRVLANTICCHGVKGGGYLRICEACVREQEEIKRRAALERETAER
                     KAEILNNAKVLRRASSKDTEIFSSRIMGFFFLFIHRNSKLR"
     gene            1503..2627
                     /locus_tag="VHD88_00135"
     CDS             1503..2627
                     /locus_tag="VHD88_00135"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HVS20216.1"
                     /translation="MGDSINWDEIRKQFPVTERFAYLNSAAAGPVSRASYEAAAGYYE
                     KMMSDGDVHWNRWLADREAIRKRIAAFINAEPDEIAFTTNTSSGMNVIVDALEDRGEV
                     ISSDLEFPVTTLPWMHRRIPVHLLSAVDGEVRFEDIRAAMTDKTGIIALSHVQFSNGF
                     RIDPEKLGEIKGKHALVINASQSAGVFEIDVKRMQIDALCATGHKWMLAGYGSGFVYL
                     SHELLNQSHSRSLGWLSVEDPFAMSNDELRPRHDAAARVELGCPHFAGIFALGASIDL
                     ITEIGIANIQARALELNRFLTSRLKENGWKILSPLQNETGRSAETLVEVEKPSEVVRN
                     LLRRGVIVTEKPQGIRIATHFFNNEDDIERLIAALLETRS"
     gene            complement(2628..3593)
                     /locus_tag="VHD88_00140"
     CDS             complement(2628..3593)
                     /locus_tag="VHD88_00140"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HVS20217.1"
                     /translation="MEIRQLKAFVAIAEAGTFTAGAVRVHVTQAAISMQIKQLEIETG
                     AQLFVRAPRRVIVTEAGEKLLARTRVILREHDAALEEIAALTGAERGRLRIGSASAMV
                     SADPLPQILKALRKTHPGVEASVASGTSELLVQQVLAGELDAAFVSLPVEARGIQTEL
                     LSEDYLVAIASPRHKLGKQKVVSAYALAGEKLILGERGGNTRRLIDQFFDKAGVTIKV
                     AMELSRLAAIKRMVEEDMGVGIVPLQSVREEVADGRLVRWWIEGAQINWQLGLARLVG
                     GYESPIHQTFLKLCRAHFGKPTTNAKRAKRAGRWRGRSPTVREGA"
     gene            3709..4716
                     /locus_tag="VHD88_00145"
     CDS             3709..4716
                     /locus_tag="VHD88_00145"
                     /inference="COORDINATES: protein motif:HMM:NF013986.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BadF/BadG/BcrA/BcrD ATPase family protein"
                     /protein_id="HVS20218.1"
                     /translation="MLGVKTKGTGVELLARRSPQLRRLVVGVDGGGTATRAVILDDQQ
                     RVIAEGHAGPSNPLRVGIANAASAVRDAIDQACGEASIHRDDILAAAVGLAGVRRQDI
                     RDRMRERLSECLKEINPTELFTDGEIALYGATGGAAGLVVIAGTGSICCGQNPQGKHV
                     CAGGWGPIVGDEGGGSWIARKALQAVAQATDGRGPKTALASAALNYFKISTPDDLSTA
                     IYAPNMTNDRLAGFSKQVMRVAQAGDNVAREILQKAGQQLGVAAVAVVRKLHMENEEF
                     PVACVGGVYGAGDLVLLPMREEIRRVAKKARLAEPLYSPVVAAGLIARGLLSGNLALA
                     V"
     gene            4804..5715
                     /gene="murQ"
                     /locus_tag="VHD88_00150"
     CDS             4804..5715
                     /gene="murQ"
                     /locus_tag="VHD88_00150"
                     /EC_number="4.2.1.126"
                     /inference="COORDINATES: protein motif:HMM:NF003915.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016835 - carbon-oxygen lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009254 - peptidoglycan turnover [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="HVS20219.1"
                     /translation="MTSQNSERLPVTEEENPRTANLSSRSSLEIVSAMNAEDAQVAIA
                     VRAVLPEVARAVDGIVERLRAGGHLFYIGTGTSGRLGVLDAAECPPTFGVPPELVQAI
                     IAGGYEACHRAVEASEDDAQAGVRDLAERGFTKQDALVGIAASGRTPYTVGAVEYARR
                     LGSLTIAITCAPESPISRAAEIAIVAIVGPEVIAGSTRLKAGTAQKMVLNMLSTATMI
                     RLGYVTGNRMTNVQTRNVKLHARALRILRAEAGLSEERAIEALDSANGNLPVALVMIK
                     TDCSSAEAERSLLEANGVVAKAIDLLR"
BASE COUNT         1285 a         1607 c         1641 g         1341 t
ORIGIN      
        1 cgtgcatggc ggcgaagaat ttctgcaaag ccggacgacc aattttcttg tccttaccat
       61 accgcttgca ctcaatcaca tatctcttac catctttggt cgctattgcg tccttacccc
      121 tatcattcga gtagggagtt agctctacgg cgtagccaag ctttcggaac agtcgtgcta
      181 cctcagcttc gaattcctgt ggatgaagag aaagaagaaa cccatgattc tggagctgaa
      241 tatctcggtg tctttggagc tcgctcttcg cagaacctta gcattgttga gaatctcagc
      301 cttgcgttcg gccgtttctc tttccaaggc agcgcgacgc ttaatttctt cctgttctct
      361 gacgcaggct tcacatattc ttagatatcc tccgcctttg acaccgtggc agcatattgt
      421 gttagcaagc acgcgcttct tatgagcttg agcgacctta ttgacgacgg acgcgacaat
      481 gtgacctcca tacactccaa gcctcagacc gattatcgat gcaacaaatg acagccagta
      541 cacggagcct gaagcctttg ggaagaaggt tccgcgtatc cagtagccaa caacaagcag
      601 gatgaacaat acaacgatta gtgacaacaa tcgcgatgac cgcatttcga gatcgggtaa
      661 ccgctctctc cttgcagtaa aaggactatc taaatcactt gaatcgtact gtgccatgta
      721 agtgttggat cctctcctgt cgattctgat cgcaagctgc cgcttgaggc gctttcgtct
      781 gggtcttcac cgcttttgaa aagttgtagt tctcatccca agggtcttga tttgaatagc
      841 gtcacttcaa atccatgtgc ttgatgcgaa ccagccgatg accaagcacg tcaactccgg
      901 cctgactttg cgccaagaca atatgaccga ttaagggttc gcactcttca tcttcggcat
      961 tcgtttctac aaaagaaact tcgctaaaga cgaaaacctt ctatctgtat gcgaacgggt
     1021 ccacacactt cgcctttgat ggttccttga gtactctcca gttcaatagt tctggttgac
     1081 tctagttggc ctagcctatc tttccatgcc gcgggcaaca ccatcagcga ggcatgggca
     1141 tccacaaatg catcacaact gagtctcttt gagacatccc ggacattctc gatcttcact
     1201 gaaacgatga ttcgctttag gtaaggattt cttaccgcct ctgaaaagtc gtaactcttt
     1261 ttcatttcgg cttgtcagtc cgatgcaaag tctaagcgcc gaaggcgcgc aatgcaatag
     1321 cgtagtcaac gagctttcgg ccaaattgag gagcgtgatg acgaaacgct tgcttaaacg
     1381 cagaggacgc cgagggattc gcagagggac gcagagatgg agctttcctc tgcgaactct
     1441 gcggaaacct ccgcgacctc tgcggttaat tccgacgcgc cttgggctat actcacctgc
     1501 atatgggcga ttcgatcaac tgggacgaaa ttcgaaagca gtttccggta actgaaaggt
     1561 tcgcttatct caacagcgcg gcggcggggc cggtgtcgcg ggcatcgtac gaagctgctg
     1621 cgggttacta cgaaaagatg atgagcgacg gcgacgtgca ctggaatcgc tggctcgccg
     1681 atcgtgaagc gattagaaag aggattgctg cgttcatcaa tgctgagccc gatgagatcg
     1741 cattcacgac gaacacttcg tcaggcatga acgtcatcgt tgatgcgctg gaagaccgcg
     1801 gcgaagtgat atcgagcgac cttgagtttc cagtgacgac gctcccgtgg atgcacagac
     1861 ggattccggt tcacctgctt tcggcggtcg atggcgaagt gcggttcgaa gacattcgtg
     1921 cagcgatgac tgacaagacg ggaatcatcg cgcttagtca cgtgcaattc tctaatggtt
     1981 ttcgcattga tcctgagaaa ctcggagaga taaagggtaa acacgcgctg gtaattaacg
     2041 ccagccagtc tgccggagtg ttcgagatcg atgtgaagcg aatgcagata gatgcgctgt
     2101 gcgcgacggg gcacaaatgg atgctcgcgg gctacggatc tggctttgtc tatctgagcc
     2161 acgaattact aaaccaatcg cactcgcgct cgctcggttg gttgagtgtc gaagatcctt
     2221 tcgcgatgag caacgacgaa ctccgtccgc gtcacgatgc tgcggcgcgg gtagagcttg
     2281 gctgtccgca cttcgcgggc atctttgcgc tgggtgcgtc aattgatctc ataaccgaga
     2341 taggaatcgc gaacattcag gcgcgcgcgc tggaattgaa tcgctttctc acttcacgcc
     2401 tcaaggaaaa cggatggaag atcctttcgc ctctgcaaaa tgaaaccggc cgatcggcag
     2461 agacgctggt tgaagttgaa aagccgagtg aagtcgtgcg gaatcttctg cgtcgcggtg
     2521 tgatcgttac agaaaaaccg caggggattc gcatcgcgac gcatttcttc aataatgaag
     2581 atgatattga acgattgatc gcagcgttac ttgaaacgcg ttcatagtta tgcgccctcc
     2641 cttacggtcg ggcttctgcc ccgccatctt ccggcacgtt ttgctcgctt ggcgttcgtc
     2701 gtcggctttc caaagtgcgc ccggcagagc ttcaaaaacg tttgatgaat cggcgattca
     2761 tatccgccga cgagtcgagc cagtccgagc tgccaattta tttgcgcgcc ttcgatccac
     2821 cagcgcacca gtcggccgtc agccacctct tcacgcactg actgcagcgg cacgatgcca
     2881 acgcccatgt cttcctcgac catgcgctta atggccgcca gccggctcag ttccattgcg
     2941 actttgatag ttactccggc tttgtcgaag aactgatcga ttagtcgccg cgtgttcccg
     3001 ccgcgctcgc ccaggatcaa cttttcaccg gccagcgcat aagcactgac tactttctgt
     3061 ttgccgagct tgtgacgcgg cgacgcgatg gctacaagat agtcttcgct caagagttca
     3121 gtttgaattc cgcgcgcttc gaccggcaaa gaaacaaacg cagcgtccag ttcgcccgcg
     3181 aggacttgct gcacgagcaa ctcgctggtc cctgatgcca ccgaagcttc cacgccggga
     3241 tgcgtctttc gcagtgcttt gagaatctga ggcagagggt ccgcgctgac catcgctgat
     3301 gcgctgccaa tacgcagtcg gccccgctcg gcgccggtga gcgcggcgat ttcttcgagg
     3361 gccgcatcgt gctcgcgcaa gatcacgcgc gtgcgcgcaa gcagtttctc gcctgcttca
     3421 gtaacgatca ctcgccgcgg cgcccgcaca aaaagctgag cgcctgtctc gatttccagt
     3481 tgcttgattt gcatgctgat cgccgcctgc gtgacgtgca cccgcacggc gccggcagtg
     3541 aaggtgccgg cctcggcgat tgctacgaat gcctttaatt gcctgatttc cattgcacca
     3601 tctacatcaa caaggattat tacatgaata agatctttta gtttccatta tagatgtgtc
     3661 ggcatctaaa attaaaaccg tgaacagttc atcgaaaggc acatgaaatt gctcggagtt
     3721 aaaacaaaag ggacaggagt tgagttactt gcgcgccgct cgccgcaatt gcgccgcctt
     3781 gtagtaggcg tggatggcgg cggaacagct acgcgcgcgg tcatcctcga cgaccagcag
     3841 cgcgtgattg ccgaaggcca cgccggccca tcgaacccgc tgcgtgttgg tatcgccaac
     3901 gcggcgtccg ccgtgcgtga cgcgatcgat caggcgtgcg gcgaagcttc gattcatcgc
     3961 gacgacatat tggctgcggc tgtgggactt gccggcgtcc gccgccagga cattcgcgat
     4021 cgcatgcgcg aaagactcag cgagtgcctg aaggagatca acccgaccga actctttacc
     4081 gatggcgaga ttgcgttgta cggagcgacc ggcggcgcgg cgggattggt tgtgattgcc
     4141 ggcaccggat cgatttgctg cgggcaaaat cctcaaggca aacacgtctg cgcgggtggc
     4201 tggggaccga ttgttggcga cgaaggcggc ggctcatgga ttgcgcgcaa ggctttgcaa
     4261 gccgtggccc aggcgaccga cggacgcgga ccaaagacgg cgcttgcatc cgccgcgttg
     4321 aactatttca agatctcgac gcccgacgat ctctcgacgg cgatttacgc gccgaacatg
     4381 accaacgatc gtctggctgg attctccaaa caagtcatgc gcgtagcgca ggctggtgat
     4441 aatgtcgcgc gagagatttt gcaaaaggca ggccagcaac tcggcgtcgc ggctgtcgcc
     4501 gtagtccgaa aacttcacat ggaaaacgaa gagtttcccg tggcgtgcgt cggcggggtg
     4561 tacggcgccg gcgatttagt actcttaccg atgcgagaag aaatcaggcg cgtcgcaaag
     4621 aaggctcgtc tcgccgagcc attatactct ccggtagttg ccgcaggact gattgcgcgc
     4681 ggcttgctga gcggcaacct ggcgctggcc gtttaggttt caagtttcag gtttcaagtc
     4741 tcgggttttg ggttcgcggc gttgaaactt caaactttaa acttgaaacc cgaaacttcg
     4801 aagatgactt cccaaaactc ggagcgcctt ccggttaccg aagaggagaa tccgcgcact
     4861 gctaatctta gttctcggtc ttcgcttgag atcgtttcgg cgatgaacgc cgaggacgcg
     4921 caagttgcga tcgccgtgcg cgccgtcttg ccagaggtgg cgcgcgccgt ggacggaatt
     4981 gtcgagcgtt tgcgcgccgg cggacatctt ttctacatcg gaacgggaac gtcaggcagg
     5041 ctgggagtcc tcgacgctgc cgaatgcccg ccaacgtttg gcgtaccgcc cgaattggtc
     5101 caagcgatca tcgcgggcgg ttacgaagcg tgtcatcgcg cagtcgaagc ttcggaagac
     5161 gacgcgcaag ccggcgtgcg cgacttagcc gaacgcggat tcacaaagca agatgcgttg
     5221 gtcggcattg ctgcgtcggg tcgcacgcct tacacggtcg gcgcggttga atacgcacga
     5281 cgcctcggtt cgctgactat tgcaattact tgcgcgcccg aatcgccgat ttctagagca
     5341 gccgagatcg caatcgtggc gatcgttggt ccggaggtaa ttgcaggttc gacgcgcttg
     5401 aaagcaggga ccgcgcagaa gatggtgctg aacatgcttt cgacggcgac gatgattcgg
     5461 ctcggctacg tcaccggcaa tcggatgacg aacgtgcaaa cgcgcaacgt gaagttgcac
     5521 gcgcgggcgc tgcgcatctt gcgagcggaa gctgggctga gtgaagagcg cgcgatcgaa
     5581 gctctcgatt cagcaaacgg caatttgccg gtcgcgttgg tgatgatcaa gacggattgt
     5641 tcgtctgcgg aagcagagcg ctccttatta gaagcgaacg gagtagtagc caaggcgatc
     5701 gacttgctga gataaaccat aacttccatt atcgtttaga gagcggactt gtccgctctc
     5761 cgtccgcggt gcgggaccag tcccgcttct aaacttggtc gaataagaga tcaattgcat
     5821 gggtttttcg gcaatagatt atgtggttct gctcctctac ctcgccggca tcac
//
LOCUS       DASZZE010000010         4533 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_130679, whole genome shotgun sequence.
ACCESSION   DASZZE010000010 DASZZE010000000
VERSION     DASZZE010000010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4533)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4533)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4533
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_130679"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(93..938)
                     /locus_tag="VHD88_00155"
     CDS             complement(93..938)
                     /locus_tag="VHD88_00155"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HVS20220.1"
                     /translation="MHYAECGSNKDRLVILLHGFPEFWYSWRHQLPVLGERYHVVAPD
                     MRGYNLSDKPARIEDYRIEFLVGDVLGLIKHFGKSQAAIVAHDWGAGVAWAVAQRHPE
                     VVSKLAALQVPLPAAWRENMTFAQLLRSWYMFFFQLPRIPEWWASRNDFARIEKMYRE
                     TIVRPNAFSKEDIELYKEALRQPGALTSSINYYRANVFRSLLRGGVETPHEDKGKGRV
                     KVPTLFIYDEQDIAVIPSTARDLGRFIDAPYRELRIPDSGHWVQNEAVAEVNQALLEF
                     LGDDS"
     gene            complement(1023..1361)
                     /locus_tag="VHD88_00160"
     CDS             complement(1023..1361)
                     /locus_tag="VHD88_00160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20221.1"
                     /translation="MPLTKLAHARSGDKGDTANVGLIALHDAYYPLLVREVTAARVKE
                     HFKGICKGEVERFELPNLGALNFLLHESLGGGGTLSLMTDAQGKTFSTALLRMKIEIP
                     DDEARAVGIR"
     gene            complement(1444..2886)
                     /locus_tag="VHD88_00165"
     CDS             complement(1444..2886)
                     /locus_tag="VHD88_00165"
                     /inference="COORDINATES: protein motif:HMM:NF018938.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyclic terpene utilization AtuA family protein"
                     /protein_id="HVS20222.1"
                     /translation="MSERDSVRAFRAGVSVRRVFVWNIAMKETIRIAAGQGFWGDLPD
                     GPVRQVEGGPIDYLMLDYLAEVTMSIMQKQKARDPNAGYARDFVPLMKQILPTCVEQD
                     IKVVANAGGVNVEGCAAAVRDVARELGLAGKLKIGIVTGDDILDRVDDLLSRGVELRN
                     MDTDEPLATVRNRIQSANAYLGAAPIVEALNHGAQIVITGRATDTGLTLGPMIHEFGW
                     RSDEWDKLAAGTIAGHIIECGAQCSGGNCQYEWQSIPDLANVGFPIAEASADGTFVIT
                     KHEGTGGRVNIPSIKEQLVYEMGDPREYITPDCVADFTTIQLAGDGSDRVRVFGIKGR
                     PATDSLKVSISYSAGYKAVGTLVYAWPDAYAKAKAGDKILRARLERLSLRFDQILTEY
                     VGANATHGPLAAEPSPDLAEVQLRVGVRGNDRKAIERFTKEIAPLILTGPPAVTGFAG
                     GRPKVEEIVAYWPALIPKSEIESRVNVIEV"
     gene            complement(2943..3539)
                     /locus_tag="VHD88_00170"
     CDS             complement(2943..3539)
                     /locus_tag="VHD88_00170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20223.1"
                     /translation="MRKSTIYLFILGCAVVVTAALASAGLGVSAQNSNSPTTMTESKP
                     KPKHRKKAAVPSMGRCDNTRQEQTDLSGTYTGKVKHGDQPAMDATLTITGNNFTMTNG
                     SDTHSGRITAVTTCGYTAVTVMMGDLTPPPPGPNPPAALPAMSLRAKKVGDSLTLTSV
                     PGEPQTVSFTTAGAAKAKVRRHRAKAKTTGAATTTPKQ"
     gene            complement(3625..>4533)
                     /locus_tag="VHD88_00175"
     CDS             complement(3625..>4533)
                     /locus_tag="VHD88_00175"
                     /inference="COORDINATES: protein motif:HMM:NF013225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HVS20224.1"
                     /translation="AKIHEFVAELPSNMQAGSLRSARKDAGAPKDAGAPAEKIYEIIP
                     EDHRQPYNMRGLLDCLLDEGLLDEFQADYAKEIITGHARIRGIQVGVIANARGMFRDP
                     AGGAPKFGGIIYTESAEKVAYFIETCNRHQTPLVFVQDVSGFMVGSEAEHSGIIRAGA
                     GFVEAMATAIVPKIVLTVNHASGAGYYAMAGQGFDPDFIFSWPTGRMGVMEGDSAVHA
                     VFGSQLEKLKADGKTPDEKLTAEMDRVKETYDKELDAKYAAARGFVDAVIAPEETRDA
                     LELALRVSLNYSGPHLGQFVLPAALA"
BASE COUNT          934 a         1379 c         1176 g         1044 t
ORIGIN      
        1 cggacgattg agcgtgatcc gcgcgaggcc atcctgaacg gtaaagagca cggcttggtt
       61 ttcttcactc atagcgtttt cttgtcgtct gattacgaat cgtcaccaag gaattcaagc
      121 aacgcttgat tgacttcggc aactgcttcg ttctgcaccc agtgaccgct gtcaggaatc
      181 cggagttcgc ggtacggcgc atcaatgaaa cggcccaggt cgcgcgctgt tgaaggaatc
      241 acggcgatgt cctgctcgtc gtagatgaat aacgtgggaa ctttgacccg gcctttgcct
      301 ttgtcctcgt gtggggtttc gacgccaccg cgcagcagcg atcgaaagac gttcgcacga
      361 tagtagttga tcgaactggt gagcgcgccc ggctgtcgca gagcctcctt gtaaagctca
      421 atgtcctctt tggaaaatgc gttcggcctg acgattgtct ctcgatacat tttttcaatt
      481 ctggcaaagt cgtttctgct cgcccaccat tcagggatac gcggcaattg aaagaagaac
      541 atataccaac tgcgcagcaa ttgggcgaac gtcatgttct cgcgccaggc ggcgggcaaa
      601 ggcacttgca gagcagccaa cttcgatact acttccggat gtctttgcgc gacggcccag
      661 gcgacgcctg cgccccagtc atgcgcgacg atcgcggcct gagactttcc gaagtgcttg
      721 attagtccaa gtacatcgcc gacgagaaac tcgattcgat aatcctcgat tcgagcaggc
      781 ttgtcgctca agttgtagcc gcgcatgtcg ggcgcgacta cgtggtagcg ttctccgagt
      841 accggcaatt gatgtcgcca cgaataccaa aactcaggaa atccgtgcag caggatcacg
      901 agacgatctt tattgctgcc acattccgcg taatgcaaac ggacgccgcc aatctgcgcg
      961 taatctgacg aacagtcttt tcggcgaatg ctgactgagt ttgcatggta gtagttgatt
     1021 cgtcagcgta tcccgacggc gcgggcttcg tcatccggaa tctcaatctt cattctcagc
     1081 aaggctgtcg aaaatgtctt cccttgcgcg tcggtcatca acgaaagcgt cccgccacca
     1141 ccaagacttt cgtgcaacaa aaagttaagc gcgccgagat tcggcaactc gaaacgttcg
     1201 acttcacctt tgcagatgcc tttgaagtgt tctttgacgc gcgccgcggt gacttcccgc
     1261 acgagcaacg gatagtacgc gtcgtgcagc gcaatcaaac cgacgtttgc agtgtcaccc
     1321 ttgtcgccgg agcgcgcgtg tgcaagttta gtaagtggca ctttcatcat cataaccact
     1381 cgcgcgaaaa tgaacgcaat cctctgcgtt ctctgcgaaa ccctccgcgt cctctgcgtt
     1441 taattacact tcgattacat taacgcgcga ttcaatctca ctcttcggaa tcagcgccgg
     1501 ccagtaggca acgatctctt cgacctttgg acgtccgccc gcaaagcctg ttactgctgg
     1561 tggcccagtc aggatcagcg gcgcaatctc tttcgtgaac cgctcgatcg ctttgcgatc
     1621 attgcctcgc acgccgacgc gtaactgtac ctctgcaaga tcgggggaag gctcggccgc
     1681 caacggtcca tgcgttgcat tcgcgccaac gtactcagtc aggatttgat cgaaacgcaa
     1741 actcagccgc tcaagtcgcg cccgcagaat tttgtctcca gctttcgcct tcgcataagc
     1801 atcgggccat gcataaacga gcgtgccgac ggctttgtaa cccgctgaat aactgatcga
     1861 tactttcaga gaatcagtgg ccggtcggcc cttgatgccg aacacccgaa cgcgatcaga
     1921 gccatcgccc gccaattgaa tcgtcgtgaa atcggcaacg caatccggcg tgatgtactc
     1981 gcgtgggtcg cccatttcgt aaacgagttg ctccttgatc gacggaatgt tgacgcggcc
     2041 gccagtgcct tcgtgtttcg tgatcacaaa cgttccatcg gctgaggctt cggcgatcgg
     2101 aaaaccaacg ttcgcgagat ccggaatgct ttgccattcg tactggcagt tgccacccga
     2161 acattgcgcg ccgcattcaa tgatgtgccc ggcgatcgtt cccgccgcaa gtttatccca
     2221 ttcatcgcta cgccaaccga attcgtgaat catcggcccg agcgttaagc cagtatcagt
     2281 cgcgcgtccc gtgatgacga tctgcgcgcc atgattcaga gcctcaacaa taggcgcggc
     2341 tccgagataa gcgttcgcgc tctgaatccg attgcgcaca gtcgccaacg gttcatctgt
     2401 gtccatgttg cgcaactcga ctccgcgcga taacaaatca tcgacacgat cgagaatgtc
     2461 gtcaccggta acgattccaa tcttcaactt tccggcgaga cccaactcac gggcgacgtc
     2521 gcgcacggcc gcggcgcatc cttcgacatt cacgccccct gcattcgcaa cgactttgat
     2581 atcttgctca acgcatgtcg gcaggatctg cttcatcaac ggaacgaaat cgcgcgcgta
     2641 tccggcattt ggatcgcgcg ccttctgctt ctgcatgatc gacatcgtga cctccgccag
     2701 atagtcgagc atcagataat cgattggtcc gccttcaacc tggcgcaccg gcccgtcagg
     2761 cagatcgccc cagaagccct ggccggccgc aatgcgtatc gtttccttca ttgcaatatt
     2821 ccagacaaag acgcggcgca cggaaacgcc ggcgcgaaac gcgcgaacgc tatcgcgttc
     2881 ggacatccat ctcgccgtgt ctccgcgtct ccgcgtcgat cacttcacgc gcgctgttct
     2941 tcttactgct tcggcgttgt cgtcgcagcg ccggtcgtct tcgctttcgc tctgtgcctg
     3001 cgcaccttgg ccttcgcggc gcccgctgta gtaaacgaaa ccgtctgcgg ttcgccgggt
     3061 acactggtca gcgtcaagct gtcgccgacc tttttagcgc gcagcgacat tgccggcagt
     3121 gctgctggcg gatttggccc gggcggtggc ggcgttaggt cacccatcat caccgtgacc
     3181 gcagtatagc cacacgtcgt gaccgccgtg atgcgtcccg aatgcgtgtc tgagccgttc
     3241 gtcatcgtaa agttattgcc tgtgatcgtc agcgtcgcat ccatagccgg ttggtcgcca
     3301 tgcttgacct tgccggtata agtgccggaa agatcggtct gctcctgtct agtgttgtcg
     3361 caacgaccca tgctcggaac ggccgccttc ttgcgatgtt ttggtttcgg cttgctctcc
     3421 gtcatcgtcg tgggcgagtt cgaattctgc gccgatacac ccaagccggc gctggcgagc
     3481 gcggccgtca caaccacagc acatcccaga atgaaaagat agatggtgct ctttctcacg
     3541 tttcttctcc tttgtttatt ctcttgcgcc ttcgcgccct tgcgtgaact ttgtctctac
     3601 gaaatctgcg taatctgcgg attattatgc caacgcggcc ggcaaaacaa actgccccag
     3661 atgcggtcct gaataattca gactcacgcg caatgcaagc tccagtgcgt cgcgcgtttc
     3721 ttcgggtgcg atcactgcat cgacaaaccc acgcgccgca gcgtacttcg cgtcgagttc
     3781 cttatcgtac gtttctttca cgcgatccat ttcggcggtg agcttttcat caggtgtttt
     3841 gccgtctgcc ttcagctttt cgagctggct gccgaacacg gcatggacag cggaatcacc
     3901 ttccatcacg cccatgcgtc cggtgggcca actgaaaatg aaatcaggat cgaagccctg
     3961 ccccgccatt gcataatagc ccgcgccgga agcatgattc accgtcagga cgatcttagg
     4021 cacgatagcc gtggccatag cttcaacaaa gcccgcaccg gcgcgaatga ttccggaatg
     4081 ctcagcttcc gaaccgacca taaaacccga aacatcctgc acgaaaacca gaggcgtctg
     4141 atgacgattg caggtttcga tgaagtaagc aactttctcg gcggattcgg tgtagatgat
     4201 cccgccaaac tttggcgcgc cacccgccgg gtcgcgaaac atgccgcgcg cgttcgcgat
     4261 cacgcctact tggatgccac gtatgcgcgc gtgcccggtg atgatctctt tcgcatagtc
     4321 cgcctgaaac tcgtccagaa gaccctcgtc gagcagacag tccaacaagc cgcgcatgtt
     4381 gtaaggctga cgatgatctt cgggaatgat ttcgtaaatc ttttccgctg gagcgccggc
     4441 atcttttgga gcgcccgcat ccttgcgggc ggaccgcagg cttccagcct gcatattcga
     4501 cggtagctcc gcaacaaact catgaatctt cgc
//
LOCUS       DASZZE010000011         3941 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_277443, whole genome shotgun sequence.
ACCESSION   DASZZE010000011 DASZZE010000000
VERSION     DASZZE010000011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3941)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3941)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3941
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277443"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(90..1292)
                     /locus_tag="VHD88_00180"
     CDS             complement(90..1292)
                     /locus_tag="VHD88_00180"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: protein motif:HMM:NF009114.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0030604 - 1-deoxy-D-xylulose-5-phosphate
                     reductoisomerase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070402 - NADPH binding [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HVS20225.1"
                     /translation="MTLRGVSILGSTGSIGCNTLRVVESLGPERFRVVALGAGRNVEK
                     LLDQISRHQPDLVSVQTEEAAEQLKAELRRRGISPPRIVVGESGLVRVATHAEADCVV
                     SGTVGAVGFVPTLRALEAGKRVALANKETLVMAGELMTRAAAKSGAELLPVDSEHNAL
                     HQCLRGEKRSEVRRIILTASGGPFRTHDKAAIESATVAEAMKHPTWNMGAKITIDSAT
                     LMNKGLEVIEAHWLFGFSADAISIVVHPESIVHSMIELIDGSVIAQMGVTDMRHAIQY
                     ALTYPERHASELPPLDLAKLTSLHFEEPDLERFPCISLAYRALKTGGTLPAAMNAANE
                     EAVHAFIDERIALTDIARVIESVMSQHQTRPATDLEAVLDADRTARAAAALIIDSLSR
                     EPVASSAA"
     gene            complement(1297..1710)
                     /locus_tag="VHD88_00185"
     CDS             complement(1297..1710)
                     /locus_tag="VHD88_00185"
                     /inference="COORDINATES: protein motif:HMM:NF020279.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase assembly factor Coa1 family
                     protein"
                     /protein_id="HVS20226.1"
                     /translation="MTTKKIILIIAGIFGVLALLVVLFAGGIVWFAFHTIANSEAAET
                     ARTYLRNNEVLKQDIGEVKDFGWFVTGNINVGNGDGEATLYLKVIGEKRNVNARVDLS
                     YRSNRNWRVTGASYQRDGQTIDLMRSYEQSPPPPE"
     gene            complement(1854..2738)
                     /locus_tag="VHD88_00190"
     CDS             complement(1854..2738)
                     /locus_tag="VHD88_00190"
                     /EC_number="2.7.7.41"
                     /inference="COORDINATES: protein motif:HMM:NF013327.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HVS20227.1"
                     /translation="MKAQPAKQKPKSRLAAIPPSIARLLTAVVLLPILIASIVIAKLA
                     LLFVLVAAVAMVIALYEFWLLARRQQVKADVAAGYLGAAALLTVFYFNEPGKWLDFEM
                     MQAIILVFTMGALAAAMLRGAPFDKMIMSVGATVLGVLYVVLLGGHLVAVRVGFAAAL
                     SRHLLAFFFLVIMSADSAAYYGGRTFGSHKLAPGISPGKTWEGAIAGMMISLLAAALA
                     HFWFFKELPLRFALPLAAVMNVLSVLGDLTESALKRSAGAKNTANILPGHGGVLDRLD
                     SLLFNAPVIYYFARLYFK"
     gene            complement(2817..3626)
                     /locus_tag="VHD88_00195"
     CDS             complement(2817..3626)
                     /locus_tag="VHD88_00195"
                     /inference="COORDINATES: protein motif:HMM:NF011405.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenyl transferase"
                     /protein_id="HVS20228.1"
                     /translation="MLADFTEVVNKGTRDDLLLSSIAWDRLPRHIAIIMDGNGRWAAQ
                     RGQPRIAGHRAGVEAVRAAVDTGARLRLGALTLYAFSTENWKRPRYEIDALMRMLRKY
                     LRIELDEIDRQDIRFQTIGRIAELPSSVRTDIANATERTAKNTGMTLSIALNYGGRAE
                     IVDACRAAMQQLMLEGQSPDDLTEDEIARRLYTHGLPELDLLVRTSGELRISNFLLWQ
                     SAYAEIHVTETLWPDFRRVHLLEAVVAYQQRGRRFGGLKVTEPRRVGVASG"
     gene            complement(3650..>3941)
                     /locus_tag="VHD88_00200"
     CDS             complement(3650..>3941)
                     /locus_tag="VHD88_00200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20229.1"
                     /translation="EFDRGEKWLRYQRWLSKLTDYVMVAQDEPRVEQYARGKSGEWIY
                     SVVKGLENEIQIESINCPLKLSEIYARVTFPEPKPERPDQSFEDILRAKGLR"
BASE COUNT          841 a         1177 c         1092 g          831 t
ORIGIN      
        1 ccaggaacta aacattaagt cactaaagcg agtttacgtg gacggtacga gatgcgtcaa
       61 accacgtgaa ggttgcgcgg gtcgcaggtt caagccgcgc tgctcgcgac gggttcgcgc
      121 gaaaggctat cgataatcaa ggcggccgcg gcgcgcgcgg ttcggtcagc atcgagcacg
      181 gcctccaggt cggttgccgg tcgcgtttga tgttggctca taacgctttc gatcacccgc
      241 gcgatatcgg tcaaagcgat gcgctcgtcg atgaaagcgt ggacggcttc ttcgttggcc
      301 gcattcatcg ccgccggcag cgtgccgcct gttttcaaag ctcgataggc cagcgagatg
      361 cacgggaagc gttcgaggtc gggttcttcg aagtgaagcg aggtgagctt tgcgagatca
      421 agtggcggaa gttccgaagc gtggcgttca ggataagtca gcgcgtattg aatcgcgtgg
      481 cgcatgtcgg tcacgcccat ctgcgcgatg accgaaccgt caatcaattc gatcatcgaa
      541 tgcacgattg attcaggatg cacgacgatg ctgattgcat cggcgctgaa gccgaacagc
      601 cagtgcgctt cgatcacctc gagacctttg ttcatcaacg tcgccgagtc gatcgtgatc
      661 ttcgcgccca tgttccaggt cggatgcttc attgcttcgg caacggtggc agattcaatc
      721 gcggctttgt catgagtgcg aaacggccct cccgacgcgg tgagaatgat gcggcggact
      781 tctgatcgct tctcgccgcg caggcattga tgcagcgcgt tgtgttcgga atcaaccggc
      841 aacaactccg cgccggattt tgcggcggcg cgcgtcatca gctcgccggc catcaccagc
      901 gtctctttgt tcgcgagcgc gacgcgcttc cccgcttcca atgcgcgcag tgtcggcacg
      961 aatccaactg cgcctacggt gcccgagacc acgcagtcag cttcggcgtg cgtggcaaca
     1021 cgaaccaggc cactctcgcc gacgacgatg cgcggcggcg agatgccacg cctgcgcaat
     1081 tctgctttca gttgttcggc ggcttcttcc gtttgaactg agaccagatc gggttgatga
     1141 cgagagattt gatctaagag cttctcaaca ttgcggccgg cgccaagagc gacaacgcga
     1201 aacctttccg gtcccaaaga ctcgacaacg cgcagcgtgt tgcatccaat tgagcctgtc
     1261 gaacctaaga ttgagacacc gcggagagtc atgaatttat tcgggtggcg gaggtgattg
     1321 ttcgtatgat cgcatcaggt cgatcgtctg accgtcgcgc tggtaggatg cgccggtgac
     1381 gcgccagttt cggttgctgc gataggacag atcaaccctg gcgttgacgt ttcgcttttc
     1441 gccaatgact ttgaggtaaa gagttgcttc gccatctccg ttgccaacat taatattgcc
     1501 ggtcacaaac caaccaaagt ctttcacctc gccgatgtcc tgcttcaaaa cctcgttgtt
     1561 gcgaagatac gtgcgagcag tctcggcggc ttcgctgttc gcgatcgtgt gaaacgcaaa
     1621 ccacacgatc cctccggcga atagcaccac cagcaaggcc agcacgccga agattcccgc
     1681 gatgattaag atgatctttt tcgtggtcat gagaacaaat ctgccacaga ggcactgaga
     1741 cacagagaat aaaatgaaat catgaagact ctgaccatcc tagactcgat gatcgcgccc
     1801 tctgctataa ctttctgaaa catcctctgt gtctctgcgc ctctgtggcg gtcctattta
     1861 aaatagagtc gagcaaaata gtagatgacc ggcgcattga acagcaagct gtccagacga
     1921 tccagcacgc caccgtgtcc cggaagaatg ttggcggtgt ttttcgcgcc cgcgcttctc
     1981 ttcaaagcgc tctcggtcaa gtcaccgagc acgctcagga cattcatcac ggccgccagg
     2041 ggcagcgcga acctcaaagg cagttccttg aaaaaccaga agtgcgccag cgccgccgcc
     2101 agcaggctga tcatcatgcc ggcgatcgcg ccttcccacg ttttgcccgg gctgattccg
     2161 ggcgcgagct tgtgacttcc aaacgtcctg ccgccgtagt aagccgcgga gtcggcgctc
     2221 atgatcacca gaaaaaagaa cgccagcagg tgacgggaaa gcgcggccgc aaatcccacg
     2281 cgcacggcga ccagatgacc gccaagtaaa acgacgtaca ggacgccgag caccgtcgcc
     2341 ccgacagaca tgatcatctt gtcgaacggc gcaccgcgca acatcgccgc ggcgagcgcg
     2401 cccatcgtaa acacaagaat gatcgcctgc atcatttcaa agtcgagcca cttgcccggt
     2461 tcattgaaat agaaaaccgt cagcaacgcc gccgcgccca gatacccggc cgccacgtca
     2521 gcctttactt gctgtcgccg ggcgagcagc cagaactcgt aaagcgcaat caccattgcc
     2581 accgccgcta ccagaacaaa aagcagcgcg agcttcgcaa tcacgatcga agcaatcaga
     2641 atcggaagta agacgaccgc tgttagcagc cgcgcgatcg acggcggaat ggccgcgagt
     2701 cttgatttcg gtttttgctt tgctggttgg gctttcaagg tttggtggtc gttcgacgac
     2761 gattgtttga gccctccctc acggtcgggt tactgccccg tttgcttacc acttcgctat
     2821 ccgctcgcta ccccgacgcg tcggggctct gtaactttca gtcctccgaa ccgccggcct
     2881 ctctgttggt aagcgacgac ggcttcgagc agatgcacgc ggcggaaatc gggccaaagc
     2941 gtttcggtca cgtgaatctc ggcgtaggcg ctttgccaca aaagaaaatt tgaaatgcgc
     3001 agttcgccgc tggtgcgcac cagcaagtcc aactccggca gcccgtgcgt gtacagtcgg
     3061 cgagcaattt cgtcctcagt caaatcgtcc ggcgactgtc cttccaacat cagttgctgc
     3121 atcgccgcgc ggcaagcatc aacgatctct gcgcggccgc catagttgag cgcgatgctc
     3181 aaagtcatgc ccgtattctt cgcggtgcgc tcagtggcgt tggcaatgtc agtgcggacg
     3241 ctcgacggca actccgcgat ccgtccgatg gtttggaagc gaatgtcttg gcggtcgatc
     3301 tcatcaagtt cgatccgcag atatttccgc aacatgcgca tcaacgcatc gatttcataa
     3361 cgcggtcgct tccagttctc agtagaaaaa gcgtacagcg tcagcgcgcc cagacgcagc
     3421 cgtgcgcccg tatcgaccgc cgcgcgcact gcttcgacgc ccgcgcggtg accggcgatg
     3481 cgcggctgtc cgcgttgcgc cgcccagcgg ccgttgccgt ccatgatgat tgcgatatgc
     3541 cgcggcagac ggtcccaagc aatcgatgac agcaagagat cgtcgcgcgt gcctttgttg
     3601 actacttcgg taaaatcagc gagcacagtg attcgtgttc aaagaagttt cagcgaagac
     3661 cctttgcgcg gagtatgtct tcaaaactct ggtccggcct ctcaggcttc ggctccggga
     3721 aagtgacgcg cgcgtaaatc tcggagagct ttagcggaca gttaatcgac tcaatctgga
     3781 tctcattctc aagtcccttc acaaccgagt agatccattc gccggacttc cctcgtgcat
     3841 attgttcaac cctgggttcg tcctgggcga ccatgacgta atctgtgagt tttgacagcc
     3901 acctttgata tcgcaaccac ttctcgcccc gatcaaactc t
//
LOCUS       DASZZE010000012         6646 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_277445, whole genome shotgun sequence.
ACCESSION   DASZZE010000012 DASZZE010000000
VERSION     DASZZE010000012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6646)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6646)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6646
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277445"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2454
                     /locus_tag="VHD88_00205"
     CDS             <1..2454
                     /locus_tag="VHD88_00205"
                     /inference="COORDINATES: protein motif:HMM:NF019334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HVS20230.1"
                     /translation="YLAQDTSELERTVAIKLLPAEVASDPKRMQRFVQEAKTVSALNH
                     PNILTIYEFGQEGATRFIATEYVDGVTLREHMSARRMKLHEVLEIAMQIAAALDAAHE
                     AKVVHRDIKPDNIMVRRRDHIVKVLDFGLAKPTEGSAAAERQAVDTEARTKVLVHTEP
                     GLVMGTVSYMSPEQSQGSAHVDWRTDVWSLGVVLYEMVAGRVPFEGKDIHRQIIAIQE
                     QEPPPLSRFAEGAPERLEEIVAKALAKDPNERYQTAKDLLIDLRNLKRRLEVDAEIER
                     TVAPELRAASTDGSQSTVAATVSGAAAATAQASTAHVSSAEYIVSGIKQHKLAAVAAL
                     VVIAVGIVGLTAYLHARNAEVAIESIAVLPFQNRSTEADTEYLSDGLAESLIYRLSQL
                     PNLKVSPTSSVFRYKGKEIDPIKVGQELGVNAVLSGRIVQRGDNITISAELVDVRYNK
                     LLWGEQYDRKMSDLLATQREIAREIVDKLKFKVSGEEKGLAKHYTESNEAYQLYLKGR
                     FYWNKRTEEGMQKSLEYFQQAIEKDPNFALAYSGLADTYDLLGAQDAGGTLAPNDALP
                     KAKIAALKAMALDETLAEPHVSLAHATYLYDRDWAAAEREFNRAIELNPNYPQAHHWY
                     AIYLMWAGRSDQAVTEARRALELDPLSLPINMTLGWVLCIARQEDQGIEQLRKTVEMD
                     PNFMVAHHRLGLGYEQKGMYSEAIAEFQKVYHLSGGKQIAVAALGHAYATSGKREDAQ
                     KAIAELRELSKQRYVSAALIAAIYAALGDKDQAFAWLDKADKDHDLVFSRLKVDPRFD
                     SLRSDARFADFVKRVGLPQ"
     gene            2474..4981
                     /locus_tag="VHD88_00210"
     CDS             2474..4981
                     /locus_tag="VHD88_00210"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HVS20231.1"
                     /translation="MSLITGTRLGRYKIRSQLGAGGMGEVYLAQDTKLDRKVALKILP
                     AEVAADRNRMNRFVQEAKAASALNHPNIITIYEIEQIDSVNFIATEFIDGETLRERIR
                     KASMKLGEVLDVAIQAASALAAAQAAGIIHRDIKPENVMLRRDGIVKLLDFGLAKLTE
                     QPVATSVDTEAPTRALMNTEPGMVMGTATYMSPEQARGLDVDARTDIFSLGALIYEMV
                     AGRLPFDGSNQNEIVASILSDKETAPLARYAQAVPVELERIVAKALRKRRDERYQTVK
                     DLLLDLKALKQELEFEAKLERSAPPKARVSLATASRGQSGATIDQSVASTVQVSQAHP
                     TSSAEYLVAGIKQHKVAAIVVLIVVAVGIVGLAAYLHARNTEVAIASIAVLPFANQNH
                     DPDSEYLSDGLTESIINSLTQISNLKVIARSSVFRYKGKQTDPIAVANELGVRAVLTG
                     RIMQRGENLTVSAELIDARDNKQLWGERYERKVSDLLSVQRDIAQEISGNLRLRLSGA
                     EQNRVARQHTENAEAYQLYLQGRFQWYKQTEDGLTKAIEYFEQAVGKDPNYALAHTGL
                     ADSYWALADASLSVLEAIPKAKDEATKALQLDDSLAEAHTSLAVIKVNFEFDWAGAEN
                     EFKRAIELNPNYAEAHHQYGWLLAESGRPAEGLEEMKRAQRLDPLNLVINVDINAPLY
                     FQRRFDLSVEQSRKVVAMDPNFYLAHYTLGWASLQLHDFKTGIAELEKARALEDKPWI
                     VGTLAYGYALSGNRTAALKLIAELHEQAKHRHVTPYWLAMTSIALGDKDDAFKWLEQS
                     YEERSFWLIFLKMDAAVDPLRDDPRFKDLLKRLRFPE"
     gene            5111..>6646
                     /locus_tag="VHD88_00215"
     CDS             5111..>6646
                     /locus_tag="VHD88_00215"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HVS20232.1"
                     /translation="MTITPGTRLGRYEIRSKIGAGGMGEVYLAQDTQLDRKVALKILP
                     GDVAANQDRMRRFTQEAKAAAALNHPNIAHIYEMGESNGMHFIAMEYVEGDTLREKIH
                     RDRTELRKLLRYLQQAAEGLAKAHAAGIVHRDLKPDNIMITRDGHAKILDFGLARLIE
                     PADRSSAGNETGSELATAILQQHSTPGMVLGTAGYMSPEQAQGKTKEIDHRSDIFSFG
                     CILFEAATGHKAFEGKDILDSLHKIVHAPTPLIKETNANAPNELQRIVRRCLAKDPEE
                     RYQTIKDVAIELKEVRRELEGTGIDTTVPPSTVGEAKSLSGAEASASQAFSAPTSTPP
                     ASLSTRASSAEYIISGIKQHKLAAIIAIIALVIGAILLSVYLHARNTEVAIESIAVLP
                     FENQNHDPNTDYLSDGVTESIINSLTQLANLRVIARSSVFRYKGKETDPIAVGNQLGV
                     RAVLTGRIMQRGENLTISAELVDLRDNKQLWGEQYERKVSDLLSVQRDIAQEISSKLR
                     TKIS"
BASE COUNT         1642 a         1775 c         1894 g         1335 t
ORIGIN      
        1 tatctggcgc aggacacgag cgagcttgag cggaccgttg ccatcaaact attgccagcc
       61 gaagttgcct ctgatccgaa acgaatgcaa cgctttgtcc aggaagccaa gactgtttcg
      121 gcgctcaatc atcccaacat cctgaccatc tacgaatttg gacaagaagg ggcgacacga
      181 ttcatcgcca ctgaatacgt tgacggtgtg acgctgcgcg agcacatgag cgcgcgccgg
      241 atgaagctgc acgaggtgct ggagattgcg atgcaaattg ccgcggcgct cgacgcggcg
      301 cacgaagcaa aggtcgtgca tcgcgacatc aaacccgaca acatcatggt tcgccgacgt
      361 gaccacatag tcaaagtgct cgacttcggg ctcgcgaagc ccaccgaagg aagtgctgcg
      421 gcggagcggc aggcagtgga cacggaagcg cgaacgaaag tgctggttca cacagagccg
      481 ggactagtga tgggcacagt cagctatatg tcaccggagc agtcgcaagg ctccgcgcac
      541 gtggactggc gcacggatgt ttggagtctg ggcgtagtcc tctatgaaat ggtcgccgga
      601 cgcgtgccct ttgaaggcaa agacattcac cggcagatca tcgcgattca agaacaagag
      661 ccgccgccgc tttcaagatt tgctgaaggg gcgccagagc gcctcgaaga gatagtcgcg
      721 aaagctctgg cgaaggatcc gaacgagcgt tatcaaacgg caaaggatct gctgatcgat
      781 ctgcgcaact tgaagcgtag gctcgaggtt gatgctgaaa ttgaacgcac tgttgcacct
      841 gagcttcgcg ctgcctcgac cgacgggagc cagagcacag tggcggcgac cgtatcaggc
      901 gccgcagcag caacagcgca ggccagtacg gcacatgtct caagcgccga gtacattgtc
      961 tccggaatca aacagcacaa gcttgccgca gtggcagctt tggtcgtgat tgccgtgggc
     1021 atagttggtc tcactgctta tctgcacgcg cgaaatgccg aagtcgcaat cgagtcaata
     1081 gccgttctgc ctttccagaa tcgaagcact gaagcggaca ctgagtatct ttccgatgga
     1141 ttagcggaat cgctcatcta tcgcctttcg cagttgccca atctgaaagt gagtcccacc
     1201 agttcggtct ttcgttacaa aggcaaggag atcgacccca tcaaagtcgg ccaggaactt
     1261 ggcgtgaatg ccgtgctgtc gggaaggatc gtccagcgcg gcgacaacat aacaattagc
     1321 gccgagctcg tggacgtccg ttataacaag ctgctatggg gcgagcagta cgaccgcaag
     1381 atgtcagact tgttggcgac ccagcgtgag attgcccgag agattgtcga taaactgaag
     1441 ttcaaagttt ccggcgaaga gaaagggctt gccaagcact acaccgagag taacgaggct
     1501 tatcagcttt atttgaaagg tcgtttttac tggaacaagc gaaccgaaga aggaatgcag
     1561 aagtcactag aatattttca acaagcgata gaaaaagatc cgaatttcgc gctggcttat
     1621 agcggcttgg ccgataccta cgatctgttg ggagcgcagg atgccggggg aacgcttgcg
     1681 ccaaacgacg cgctgccgaa ggcgaagatc gccgccctca aggccatggc gcttgatgaa
     1741 acgcttgccg aaccccacgt ttcgctcgct cacgctacgt atttatatga tcgtgactgg
     1801 gcggctgcag aacgcgaatt caaccgcgct attgaactca atccaaacta tccgcaagcg
     1861 catcattggt atgccatcta cttgatgtgg gctgggcggt cggaccaagc cgtgaccgaa
     1921 gccaggcgcg cgctggagct ggatccgctt tcgcttccca tcaatatgac tctgggttgg
     1981 gtgctttgca ttgcgcgaca ggaagatcaa ggcattgagc aacttcggaa gacagtcgaa
     2041 atggatccaa actttatggt ggcgcaccac cggctcggtc tcggttacga acagaagggg
     2101 atgtacagcg aagccattgc tgagtttcaa aaggtgtatc acctttcagg aggtaaacaa
     2161 atagcggtag cagcgctcgg gcatgcttat gcaacatcgg gaaaacgcga ggacgcgcaa
     2221 aaggctatag cagaattgcg ggagctgtcg aaacagcggt acgtatcggc cgctctcatc
     2281 gcggctatat atgctgcgtt aggcgataag gatcaggcct tcgcctggct cgataaagcg
     2341 gacaaggatc atgacctcgt tttttcacgc ctaaaagtgg atccaagatt cgatagcctg
     2401 cgctctgatg cgcgcttcgc tgacttcgtg aagcgtgtag gtctgccgca gtgattcgat
     2461 tgacgagaag cctttgagtt tgattaccgg cacacgatta ggccgctaca agatccgctc
     2521 gcaactcggc gcgggcggga tgggtgaggt gtatctggcg caggacacga agctcgatcg
     2581 gaaagtggca ctgaagattt tgccggctga agttgctgcc gatcgcaatc gcatgaaccg
     2641 attcgttcaa gaggcaaagg ctgcttcggc gctgaaccat ccaaacatca tcacgattta
     2701 tgagatcgag cagatcgact cagtgaattt cattgccacc gaattcattg atggtgagac
     2761 gctgcgcgaa cgcattcgaa aagcatcgat gaagctcggc gaagtgcttg atgtcgcgat
     2821 tcaagcagcc agcgcgctcg cagccgcaca ggccgctggc atcattcatc gcgacatcaa
     2881 gcccgagaac gttatgctgc ggcgcgacgg gatcgtgaag ctgctcgatt tcggtttggc
     2941 aaaactaacc gagcaaccag tcgcgacttc cgtagatact gaggcgccga cacgagcgct
     3001 gatgaatacg gagcccggca tggtgatggg cacggccaca tacatgtcgc cggagcaagc
     3061 gcgcggactt gacgtggatg cgcgcacgga catcttcagt ctcggtgctt tgatttacga
     3121 gatggtcgcg ggtcggctgc ctttcgatgg ttcgaaccaa aacgaaatcg tggcgtcgat
     3181 tcttagtgac aaagagacgg cacccctggc tcgctatgcg caggcagttc cagttgagtt
     3241 ggagcgcatt gtcgccaaag ctctgcgcaa gcgtcgcgat gagcggtacc aaacggtcaa
     3301 agatctgctg ctcgatctta aagcgctcaa acaagaactg gaattcgaag ccaagctgga
     3361 acggtcggcc ccgcccaaag cccgcgtctc gctcgcgacg gcgagcagag ggcaaagtgg
     3421 cgcgacgata gatcaatccg ttgcgtcaac ggtccaagta agtcaagccc acccgacctc
     3481 gagcgccgaa tacctggtcg ccgggatcaa gcagcacaag gttgccgcca tcgtagtttt
     3541 gatcgtggtt gccgtgggca tagttggtct tgctgcttat ctgcacgcgc gcaacaccga
     3601 agtcgccatt gcatcaatcg ccgtcctgcc attcgcgaat cagaatcacg atcctgattc
     3661 agagtacctc tcggatggtt tgacggagag catcatcaat agtctgacgc agatatcgaa
     3721 tctgaaagtg atcgcacgca gctctgtctt tcgctacaaa ggcaagcaga cagaccctat
     3781 cgcagtcgcg aacgagttag gtgttcgcgc ggtgttgacc ggtcgcatca tgcagcgcgg
     3841 agaaaatctg accgtcagtg ctgagttgat tgacgcgcgc gataacaaac aactctgggg
     3901 cgaacgatat gagcgcaaag tttcggacct gttgtccgtg cagcgggata tcgctcagga
     3961 gatcagcggc aacctgcgac taaggctttc gggcgcggag cagaaccgtg ttgccaggca
     4021 gcacactgag aacgccgagg cgtaccaact ttacttgcag ggtcgttttc aatggtacaa
     4081 acaaaccgaa gatggtttga cgaaggctat cgagtacttc gagcaggcgg tcggcaagga
     4141 cccgaactat gcgctggctc acacaggtct ggcagattct tattgggctc tcgccgatgc
     4201 tagcctctca gtgttggaag ctataccaaa agcgaaagat gaggcgacaa aggcgctgca
     4261 actagacgac tcattggccg aagctcacac ttcattggcc gtgatcaagg tgaacttcga
     4321 attcgactgg gctggcgctg agaatgaatt caagcgcgcg atcgagctga atccaaacta
     4381 cgctgaagcg catcatcagt acggctggtt gcttgccgaa tcagggcgcc cggcagaagg
     4441 cctggaagag atgaaacgtg cgcaacggct tgatccattg aacctcgtca tcaacgtcga
     4501 catcaatgcg cctctgtatt ttcagcgccg attcgatctg tcggtcgagc agtcgcgaaa
     4561 agtggtcgct atggatccaa acttttatct ggcgcattac acacttggct gggcatcgct
     4621 gcaactgcac gatttcaaga ctgggatcgc cgagttggaa aaggcgcgag ctctcgagga
     4681 caagccgtgg atcgtcggca cgctcgctta cggctatgcg ctttcgggta atcgaacagc
     4741 ggcgctcaaa ctgatcgccg agctccacga gcaagcgaag caccgtcatg tcactcccta
     4801 ttggttagct atgacttcaa tcgccctggg agataaggac gatgctttca agtggctcga
     4861 acaaagttat gaagaacgat cattttggct aatcttcctg aagatggacg cggcggttga
     4921 ccctcttcgt gacgatccgc ggttcaagga cctactcaag cgtctgcgct ttcccgagtg
     4981 aatcaatgcg tgtgcgttgt ctggtcaccg cgctttcaga ggatgcgaat caacacggaa
     5041 ggaagggagc acgcacacaa ggcgctgatc aagtcaggga caattcaaaa cggcgaccgt
     5101 agtccaaaca atgacaatca ctcccggcac tcgcttaggc cgctacgaaa tccgctccaa
     5161 gattggcgcg ggcggaatgg gcgaggtgta tctcgctcag gatacccaac tcgatcgcaa
     5221 agttgcgctc aagatattgc ctggcgacgt agccgccaat caggatcgca tgcgtaggtt
     5281 tacacaagaa gcgaaagcgg cggccgcact caatcatccg aacatcgcgc acatttatga
     5341 gatgggtgag tcaaatggta tgcacttcat tgctatggag tacgtcgaag gcgacacact
     5401 gcgtgaaaag atccaccgcg atcgcaccga actgcgaaag ctgctccggt atttacaaca
     5461 ggcggctgaa ggcctcgcga aagcacatgc cgccggcatc gtacatcgcg atctcaagcc
     5521 ggataacatc atgatcacgc gcgatggaca cgcgaagatt ctcgacttcg gcttggcaag
     5581 actaatcgag ccggcggacc gttcgagcgc gggcaacgaa accggcagtg aacttgccac
     5641 agcgatcctg caacaacact caacgccggg aatggtgctt ggcactgcag gttatatgtc
     5701 gcctgagcag gcgcagggaa aaacaaaaga gatcgatcat cgctcagaca ttttctcttt
     5761 cggctgcatt ctctttgaag cggccaccgg gcataaggct tttgagggca aggacattct
     5821 ggattctctt cacaaaatcg tgcatgcacc gacgccgctg attaaggaaa caaacgcaaa
     5881 cgcgcccaac gaactgcagc gtattgtgcg ccgctgcctg gcaaaggatc ccgaagagcg
     5941 ctatcaaacg atcaaggacg tagcgattga gttgaaagag gtgcgccgcg agctggaagg
     6001 aacgggcatc gatacaactg tgccgccctc aaccgttggc gaggcaaaga gtctatcagg
     6061 cgctgaagct agtgcaagcc aagccttcag cgccccgacc agcacgccgc cggcttcgct
     6121 ttcgacacgc gcctcaagcg ccgagtacat catctccgga atcaaacagc acaaactcgc
     6181 cgcgatcatt gccattatcg cgcttgtgat tggcgctatc cttctcagcg tctatcttca
     6241 cgcgcgcaac actgaagtcg caatcgaatc aatcgcggtg ttgccttttg aaaatcagaa
     6301 ccacgatccg aacactgatt atttgtcgga cggtgtcact gaaagcatta tcaacagtct
     6361 cacgcagctt gcgaacctgc gcgtaatcgc gcgcagctcc gtctttcgtt acaaagggaa
     6421 agagacagat ccgattgcgg tgggaaatca gttaggtgtg cgcgcggtgc tgacggggcg
     6481 catcatgcag cgtggcgaga atctcaccat cagcgccgag ttggttgacc tgcgcgacaa
     6541 caagcaactc tggggtgaac agtacgagcg gaaggtctcg gacctgctct cagtgcagcg
     6601 tgatatagct caggaaatct cttccaaact gcgcacgaag atttcg
//
LOCUS       DASZZE010000013         2659 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_130808, whole genome shotgun sequence.
ACCESSION   DASZZE010000013 DASZZE010000000
VERSION     DASZZE010000013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2659)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2659)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2659
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_130808"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1322
                     /locus_tag="VHD88_00220"
     CDS             <1..1322
                     /locus_tag="VHD88_00220"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HVS20233.1"
                     /translation="APSFNIGGGNFDIDFVFRGPELQALAKYADTLREKTKEIGGIVD
                     ADTTLKLDKPELRVHINRDRAADLGVDTANIATALRLMVGGDDQVSRFRDPSVNQDYD
                     VELRLSEADRKDAATISRLYVTSSRAGLVRVDNLVDIKEELSPSRIDRLDRQRQASMR
                     AGVAPGFALADRLDALRKAAAAMNLPATYSTIVAGRGRELERTFIEFLWAFLLSIIFM
                     YMILASQFESTIHPLTILLSLPLSVPFALLSLWLLSDTLNLYSALGILVLFGVVKKNA
                     ILQIDHMNNLRTLGMERDAAIIQGNRDRLRPILMTTLALVAGMSPLALGTGPGAEERR
                     SIAIVVIGGQSLSLLLTLIATPVVYSLLDDLRSTARWRQWAGVAGRVTAPVTRVVRKL
                     APTRRGEVQFVEDQTADDSHQATSSPERSQPANPAEKKFPLPAGGGK"
     gene            complement(1698..>2659)
                     /locus_tag="VHD88_00225"
     CDS             complement(1698..>2659)
                     /locus_tag="VHD88_00225"
                     /inference="COORDINATES: protein motif:HMM:NF016021.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20234.1"
                     /translation="VDIATYAFIGGFNDTSNMEAAHRLDIPAVGTEAHYWQQAYLEYL
                     YEPEIEPRTGQAKHFEQVAFERWLDANPNGTTLLLDTIDVYMGAVHAAMAATSTDARR
                     KAFKGFRVDSGDLAELGKWCLRFFEANGLRGLRPNLTGDLDVEKVKRIVAEFPEAAGF
                     GIGTKLSSEVQHVAGVIFKACVIDGRPTLKASNSLDKTTLPGCMQVFRGIDDEGNYVG
                     DVTGLDDEQIEIPGASHVERLVQPFWENGQHSPIPSIEKQKAFVADQMKRFRDLHTYP
                     CVLSERLAKLRDDLTEQMRADSSGWERVLKLPEELPEELMNAK"
BASE COUNT          525 a          741 c          777 g          616 t
ORIGIN      
        1 acgcgccgtc attcaacatc ggcggcggca actttgacat cgacttcgtg tttcgcggac
       61 cggagctaca ggcgctggcg aagtacgccg acactttgcg tgagaagacg aaagagatcg
      121 gcggcatcgt cgatgccgat acgacgttga agttggacaa acccgagttg cgcgtgcaca
      181 tcaatcgcga tcgcgccgcc gacttgggtg ttgacaccgc caacatcgcg acagctttgc
      241 gtttgatggt tggcggcgac gatcaggtct cgcgctttcg cgatccttcg gtgaatcagg
      301 attacgatgt cgagctgcgt ctttctgagg cggatcgcaa ggatgccgca acgatctctc
      361 gtctgtacgt gacttcgtca agagcaggcc tcgtgcgagt tgacaatctc gtggatatca
      421 aagaagagct gagcccttcg cgcatcgacc ggctcgaccg ccagcggcaa gcctcaatgc
      481 gcgccggagt ggcgccggga tttgcgctcg ctgatcgtct cgacgcgctg cggaaagcag
      541 cggcagcgat gaatctgccg gcgacttact caacgatcgt tgccggccgc ggacgcgaac
      601 tggaaagaac cttcatcgaa tttctctggg cgtttttgct ctcgatcatt ttcatgtaca
      661 tgattctcgc ttcgcagttc gagagcacga ttcacccgct cacaatcctg cttagcctgc
      721 cgctttcagt tccgtttgca ttactctcgc tgtggttgtt gagcgacacg ctgaatcttt
      781 attccgcgct gggaattctg gtgctgtttg gcgtcgtgaa gaagaatgca atcttgcaaa
      841 tcgatcacat gaacaacctg cgcacgctcg gtatggagcg cgacgcggcg atcatccagg
      901 gcaatcgcga tcgtttgcga cccattctga tgacgacgct ggcgttggtt gccggcatgt
      961 cgccgctggc tctcggcacc gggcccggcg cggaggagcg gcgctcgatc gcgatcgtgg
     1021 tgatcggcgg acagtctctg tcgttgttac tgactctgat agcgacacca gttgtttatt
     1081 cgctgcttga tgatttgcgt tcgacggcga ggtggcggca gtgggccggc gtggccggca
     1141 gagtgactgc gcctgtcaca agagtcgtgc gcaaattagc gccgacgcga cgcggtgagg
     1201 tccagtttgt cgaggatcag actgcggacg actcgcatca agcaacgtct tcgccggaaa
     1261 gatcgcagcc ggctaatcct gccgagaaga agttcccgct gcctgctggc ggtggaaagt
     1321 gagttgattt acgagacacc gcgcgccgct cggctatgat cgcgtaaagc ggggtcatcg
     1381 ctgacgtgat ctttttcttt cgaagaaaaa atctagactg acggacgtgg cagcctggaa
     1441 ggctgtcata tagtagtggt cggagcgaag cgcagaccac cgggaacttt ttcttttttc
     1501 aatcggtttc cggtggtctt cgaccactgg ctactctcgt gcaaccctcc gggttgcaat
     1561 caataccctt acctctcgtt acgtgaccgt gacgtgcgct gacgagtgtc tcgccaaaat
     1621 caaagacggg aaggccaggg ctgaacgaag tgtgattgag cgcgacgacc gggaaggctc
     1681 gctttcgatc tgccgatcta cttcgcattc attaactctt ctggcagttc ttccggcagc
     1741 ttcagaactc tttcccagcc cgaactatct gcgcgcattt gctctgtaag atcgtcgcgc
     1801 aacttcgcta accgttcgct cagcacgcag ggataggtat gcaggtctcg gaagcgtttc
     1861 atttgatccg cgacaaaggc tttctgtttt tcgatcgaag gaattggcga gtgctggccg
     1921 ttttcccaga acggctgaac caaacgctcg acgtgcgacg cgccagggat ttcgatttgt
     1981 tcgtcgtcga gaccggttac atcgccaacg tagtttccct cgtcgtcgat gccgcgaaag
     2041 acttgcatgc agccgggcag cgtcgtcttg tcgagcgagt ttgatgcttt caatgttggc
     2101 cggccatcaa tcacgcaggc tttgaagatt acgccggcga catgttgaac ctcgctcgat
     2161 agcttagtgc cgatcccaaa gccggcagcc tcgggaaact cggcgacaat tcgtttgacc
     2221 ttttcgacat cgagatcgcc ggtgaggttc ggcctcagtc cgcgcaatcc gtttgcttca
     2281 aaaaagcgca agcaccattt acccaactct gcgagatcgc ctgagtcaac gcgaaatcct
     2341 ttgaaggctt tgcggcgcgc gtcggttgaa gtcgcggcca tcgcggcgtg cactgcgccc
     2401 atgtaaacgt cgatcgtatc caacagcaga gtcgtgccgt tcggattcgc gtcgagccag
     2461 cgttcaaacg cgacttgctc gaagtgcttg gcttggccag tgcggggttc gatctccggc
     2521 tcgtataaat actcaagata agcctgctgc cagtaatgcg cttcggtgcc gacggcgggg
     2581 atgtccaggc gatgcgcggc ttccatgttc gacgtgtcgt taaagccgcc gatgaaagcg
     2641 taggtcgcaa tatccaccg
//
LOCUS       DASZZE010000014         2576 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_65816, whole genome shotgun sequence.
ACCESSION   DASZZE010000014 DASZZE010000000
VERSION     DASZZE010000014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2576)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2576)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2576
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65816"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1815)
                     /locus_tag="VHD88_00230"
     CDS             complement(<1..1815)
                     /locus_tag="VHD88_00230"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HVS20235.1"
                     /translation="MALLCLAPQASVAQDLDNVTISGRVADQNGAVVPGATVTALLVA
                     TKVERTVVADGDGRYKLIQLEPGVYNIKASFTNFATEEKTGLTTIAGQNVQMDFTLKP
                     ADVTAQAVVVSASDASQVDTTRTVVGGTVTTREVESLPVNTRSPLDLIFTLGGVTEEP
                     LSTRDLAEDRTSARGTPEEAGIFSLSGGAAYSNNITIDGLDNNDDRAARERFTPSIEA
                     VDEVQIIRNQFAAEYGRASGGRVNLRTRGGSNKVRGRAFDFFRDESLNANTFKNNLLG
                     LKRLPLQEHDPGFTLSGPIRIPRIYNGHDRTFFFSAYEFDDVLDSTLIDTLVPVLQNP
                     LFPLPVPTTLSGRRTENASSPALNTDIAPFISSISTPSHNHIFTTRIDHKFTNLHNGQ
                     ILYQLGRLNNLRQFGGGSRLAQALQGKTRNTDAIAYLDNYVFSAKAVAQTRFQWSRLT
                     PAVEATGGTTTPVVLITINDPLPSTDPSQRSGTLTGGTSTTGATDRREARYQVQEIFS
                     YLGGPHSLKFGGDIQWIKSTFIDLSDATGTFNFASAGDFLANIPNRFRQNFLTTSTQH
                     NVYTGIFAQDEWRLLPNLTLSYGVRWENESIVRDRNNFG"
     gene            complement(1988..2401)
                     /locus_tag="VHD88_00235"
     CDS             complement(1988..2401)
                     /locus_tag="VHD88_00235"
                     /inference="COORDINATES: protein motif:HMM:NF024979.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HVS20236.1"
                     /translation="MKKRAHTYTISAVAEQFEVHPQTLRLYEREGLLKPSRSEGNTRL
                     YTDPDLERLEIILSLTRDLGVNLAGVEIILNMREKMDAMQREFERFFQYLQTHAEEFS
                     HFTEAPPPEAGALVAISRVNRPIPARRRAAGGKSR"
BASE COUNT          541 a          720 c          752 g          563 t
ORIGIN      
        1 cccgaaattg ttccggtcgc gcacgatgct ttcgttctcc caccgcacgc cgtagctcag
       61 cgttagattc ggcagcaaac gccactcgtc ctgcgcaaaa attcccgtgt aaacattgtg
      121 ctgcgtcgag gtcgtaagaa agttttgccg gaagcgattc ggaatgttgg cgagaaagtc
      181 gcccgcgctc gcaaagttaa acgtgcccgt cgcgtcggag agatcgatga aagttgattt
      241 gatccactgg atgtccccgc caaacttcag tgaatgcgga ccgccaaggt aggaaaagat
      301 ttcctgaact tgatagcgcg cttcgcgtcg gtcagttgcg cccgtcgtcg aggttccgcc
      361 cgtcaacgtt cccgaccgct gcgaaggatc ggttgacggc agaggatcgt tgatggtgat
      421 cagcacaacc ggtgtcgtcg tgccgccggt cgcttcgact gccggcgtca aacgcgacca
      481 ctgaaagcgc gtctgcgcga cggccttcgc cgaaaaaacg taattgtcga gataagcgat
      541 cgcgtcggtg ttgcgcgtct tgccctgcag cgcttgcgct aagcgactac caccgccgaa
      601 ctgtcgcagg ttattcagac ggccaagctg ataaaggatt tgtccgttgt gcagattcgt
      661 gaacttgtga tcgatccgag tcgtgaagat gtgattgtgc gatggcgtgc tgatcgacga
      721 aatgaaggga gcgatgtcgg tgttcagcgc gggcgaggat gcattttctg tccgacggcc
      781 tgagagcgtg gtcggcaccg gcaggggaaa cagcgggttt tgcagcaccg gcaccagcgt
      841 gtcaatcagc gtcgaatcga gcacgtcatc aaattcgtac gcgctaaaaa agaaggtgcg
      901 gtcgtggcca ttgtagattc gcggaattct gatcgggccg ctcagcgtga agccgggatc
      961 atgttcctgg agcggcagcc tcttcaaacc gagcaagtta ttcttaaagg tgttggcatt
     1021 cagcgattcg tcgcgaaaga aatcaaaagc gcgtccgcga accttgttcg agccaccgcg
     1081 agtgcgcaga ttcacgcgcc cacctgaagc gcgtccgtac tcagccgcaa actgattgcg
     1141 aatgatctgc acctcgtcaa ccgcttcgat cgacggcgtg aagcgctcgc gcgcggcgcg
     1201 gtcgtcattg ttgtcgagtc catcgatcgt gatgttgttc gaataagccg cgccgccgga
     1261 cagcgaaaag attcccgctt cttccggcgt gccgcgtgcg ctcgtgcgat cctcggcgag
     1321 gtcgcgagtg gagagcggtt cttcggtgac gccgccgagc gtgaaaatca gatccagcgg
     1381 cgagcgagtg ttgacaggca gcgattcaac ttcgcgggtc gtaacagtgc cgccgacgac
     1441 ggtgcgtgta gtgtccacct gcgaagcatc gctcgcgctg acaaccacag cctgtgcggt
     1501 tacgtccgcc ggcttcagcg tgaaatccat ctggacgttt tgtccggcga tcgtcgtcag
     1561 ccccgtcttt tcttccgtcg caaagtttgt gaacgaagcc ttgatgttgt aaacgcctgg
     1621 ctcaagttga atcagtttgt agcgtccgtc gccgtcggcg acgacagtgc gctcgacctt
     1681 ggtcgccacc aaaagggcgg tcaccgtcgc gccgggcaca accgcgccat tctgatccgc
     1741 gacgcgtccg ctgatcgtta cgttgtcgag atcctgcgca accgacgctt gcggcgcgag
     1801 gcacagcaat gccatcgcca gggcaaggac caagatcagt ttttcagaat gccgcatgga
     1861 gcgaacgcaa aacacgaatc ctactcggaa ctgggattgg acggatctta ggtggcacac
     1921 tttagcatcg tagtccgctc agctcaagca acttgtcgga cgaaatgttg aattgtcagt
     1981 gaatgggtta gcgtgacttg ccgccagcgg cgcgacgtct cgcggggatg ggacgattca
     2041 cccggctgat cgcaaccagc gcgccggctt cgggtggcgg agcttcggtg aagtgggaaa
     2101 attcttcggc gtgtgtttgc aggtattgga agaagcgttc gaactcgcgc tgcattgcgt
     2161 ccatcttttc gcgcatgttc agaatgatct cgacgcccgc gagattcact ccaagatcgc
     2221 gcgtcaaaga caaaataatt tccaatcgtt caaggtcggg atcggtgtaa agacgcgtgt
     2281 tgccttcgga gcgcgaaggc ttcaggagtc cctcgcgttc gtaaagccgc agcgtctgcg
     2341 gatgaacctc aaattgctcc gcgacggcgc tgatggtgta tgtgtgagcg cgctttttca
     2401 taaatcagtt ttcagttttg agttttcagt tcgctagccc cacacaacgg cccgatctcg
     2461 caacttaaac ctcaaaacta agaactgaac actcactcca gccccatcac cacgcgcgga
     2521 ttctccgaat tcatttgcgc atagcgacgc aacaactctt tcgtctcttc cgaaat
//
LOCUS       DASZZE010000015         2102 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_179830, whole genome shotgun sequence.
ACCESSION   DASZZE010000015 DASZZE010000000
VERSION     DASZZE010000015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2102)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2102)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2102
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_179830"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1224
                     /locus_tag="VHD88_00240"
     CDS             <1..1224
                     /locus_tag="VHD88_00240"
                     /inference="COORDINATES: protein motif:HMM:NF040246.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TGS domain-containing protein"
                     /protein_id="HVS20237.1"
                     /translation="EVQIRTEQMHRIAEEGVAAHWKYKEGKRGPRDDDEALKVLRSLV
                     EWTQDVKDSREFIDALKLDLYPKDVYAFTPMGKVIQLPRGATPVDFAFMIHSEVGNTC
                     TGARVNGRMVALRTLIQNGDVVEIITNANSHPSRDWLNFVATSRARNRVRHWVADQQR
                     TESIEIGRKLFEKEAARFQLSVKKMLGGSNGDLKRIAGEYGYGRTDDLLAAIGYGKIV
                     PRNVIAKYLGAEKFEALDKQKESRLRTGVRAVKRLITGDDAIVVRGVEDLMVNRARCC
                     NPLHGEEIIGYITRGKGVAVHTARCKNVKQLMINPERIVTVEWASRPEKTAYAVKLLA
                     ITENRTGMIAGITGAISDMKTGIRDARASVAPDEKGRIEVTVEVFDVKHLDKVIHSIK
                     NVPGVLDVERLQGPA"
     gene            complement(1258..>2102)
                     /locus_tag="VHD88_00245"
     CDS             complement(1258..>2102)
                     /locus_tag="VHD88_00245"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HVS20238.1"
                     /translation="SSLDAMTRDEFVSLRESIFIPNNAVMLVVGDVTRDAIVARIEEV
                     FADWKPGVISDLKFPAPPKRAARAAYVVDRPSSAQSNIVIANAGITRTSPDYFPMLLM
                     HTILGANASSRLFMNLREEKGYTYGAYSSLDARRLAGTFRASAEVRTPVTGASLHEFF
                     YELKRIRDEAASADEIANAKAYLTGVFPIRIETQDGLIDQLVSIWMYDLPHNYLHNYR
                     DQVNAVTIEEIQRVAQEYVTPDRAAIVIVGDAAEVRKQVEPYSEAIEVYDTEGERKAV
                     GSRQ"
BASE COUNT          479 a          576 c          607 g          440 t
ORIGIN      
        1 gaggtgcaaa tccgcactga gcaaatgcat cgcatagcgg aagaaggcgt ggcggcgcac
       61 tggaaataca aggaaggaaa acgcggcccg cgcgacgacg acgaagcact gaaagtactg
      121 cgctcgctgg ttgagtggac gcaggacgtg aaggactcgc gcgagttcat cgatgcgctg
      181 aagctcgatc tgtatccgaa ggacgtttat gcctttacgc ctatgggcaa ggtgattcag
      241 ttgccgcgcg gcgcgacgcc ggttgatttt gctttcatga tccactcaga ggtgggcaac
      301 acctgcaccg gcgcgcgcgt caacggtcgc atggtcgccc tgcgtacgtt gattcaaaat
      361 ggagacgtgg ttgagatcat cactaatgcc aactcgcacc catctcgtga ttggttgaac
      421 ttcgtagcga cttcacgcgc gcgcaatcgt gtgcgccatt gggttgccga tcagcagcgc
      481 accgaatcga tcgaaatcgg gcgcaagctt ttcgagaaag aagccgcgcg ctttcagctt
      541 tcagtaaaga agatgctggg cggcagcaac ggtgacctta aacgcatcgc gggcgaatac
      601 ggttacggac gtaccgacga tctgctggcg gcgatcggtt acggcaagat tgtgccgcgc
      661 aacgtgattg cgaaatacct cggagcggaa aagttcgaag ctctcgacaa acagaaagaa
      721 tcccgcctgc gcacgggcgt gcgcgcagta aagcgcctga tcaccggcga cgatgccatc
      781 gtagttcgcg gcgtagaaga tttgatggtt aaccgcgcgc gctgttgcaa tcctctgcac
      841 ggcgaggaaa ttatcggcta catcacgcgc ggcaaaggcg tggccgtgca taccgcgcgc
      901 tgcaagaacg tgaagcaatt gatgatcaat cccgagcgaa tagttaccgt cgagtgggct
      961 tcgcgtcctg agaaaactgc ttacgcggtc aagttgttgg cgattaccga gaaccgtacg
     1021 ggaatgatcg ccggcattac cggagcgatt tcagacatga agactggcat tcgcgacgcg
     1081 cgcgcatcag ttgcgcccga cgaaaagggt cgcatcgaag tcactgttga ggtctttgac
     1141 gtgaagcatc tggacaaagt catccattcg atcaagaacg ttcccggcgt gctcgatgtc
     1201 gaacgtctcc aaggtcctgc gtagcgagca aagaacaagg aatagcaagc tctctgccta
     1261 ctgcctactg cctactgctt tccgctctcc ctcggtgtca taaacttcga ttgcttctga
     1321 gtaaggctct acttgcttcc taacctcggc cgcatcgccc acgatcacga tcgccgcgcg
     1381 gtcgggagtg acatactcct gagccacgcg ctgaatctcc tcgatggtga ccgcgttgac
     1441 ttggtcgcga tagttatgaa gatagttgtg cggaagatcg tacatccaga tgctcactaa
     1501 ctgatcgatc aatccgtcct gagtctcaat gcggattgga aacactcccg ttaggtaagc
     1561 tttcgcgttt gcgatttcat ccgcggacgc ggcttcgtcg cgaatccttt tcagttcata
     1621 gaaaaactcg tgcagtgaag cgccggtaac cggtgttcgc acttcagcgc tcgcgcgaaa
     1681 cgtgccggcc agccgtcgcg cgtcaagact tgaatacgca ccgtacgtgt agcccttctc
     1741 ctctcgcagg ttcatgaaca gtcgcgaaga agcgttcgcg ccgagaatcg tatgcatcag
     1801 cagcatcgga aaatagtcag ggctagtgcg cgttatcccg gcatttgcaa tcacgatgtt
     1861 cgattgggcc gagctggggc gatcgaccac gtaagcagcg cgggcggcgc gctttggtgg
     1921 cgccggaaat ttcaaatcgg aaatgacgcc aggcttccaa tcggcaaaga cttcttcgat
     1981 ccgcgcgact atcgcatcgc gtgtgacatc ccccaccacg agcattacgg cgttattcgg
     2041 aatgaagatt gattcgcgaa ggctcacgaa ctcgtcgcgg gtcatcgcgt cgagtgaact
     2101 cg
//
LOCUS       DASZZE010000016         3120 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_212396, whole genome shotgun sequence.
ACCESSION   DASZZE010000016 DASZZE010000000
VERSION     DASZZE010000016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3120)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3120)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3120
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_212396"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1163
                     /locus_tag="VHD88_00250"
     CDS             <1..1163
                     /locus_tag="VHD88_00250"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HVS20239.1"
                     /translation="QTIGLSDVSFLVVGLLAAKLAERQLRSDAQLAATTRTLADLRAL
                     HERIVESIRSGVITTDLQGRIYTFNAAAEEITGHKLEDVRGHEASIFFGDMTRQIADS
                     MSAAASGKVSPRFQADCLTPNGLALRLGFSIAPLSGESGETSGVVITFQDLTNIRALE
                     ETSRRQDRLAAVGRLAASIAHEIRNPLAAMRGSIQMLRSEMDGDSEHAQLMEIILRES
                     DRLNKIVADYLNYARPRPAELNDVDVCALVRETLKLLENSSEETDRHTLDADLPDQPA
                     IANGDPEQLKQVCWNIARNALKAMPDGGTFRIALTEAGADRLRLSFTDNGCGMTPEQV
                     ERLFEPFSSTTGGTGLGLSIVYQIIRDHNGTINVSSRQGEGTTITIELPVSQ"
     gene            1686..>3120
                     /locus_tag="VHD88_00255"
     CDS             1686..>3120
                     /locus_tag="VHD88_00255"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HVS20240.1"
                     /translation="MSNILIVDDELSMRQFLTHLFQRDGHDVRVAENGRQAMMLLRQQ
                     PADVAISDVKMPDMGGIELLRAARELLPDIEFVMMTAFANVDTAREAFLLGAFDFIQK
                     PFDNDLLKEIVARALAKISLVKEKQALLDENEALIKGQRARGKLGNIIGQSDRMQSVY
                     QMIETVAQVQSTVLITGESGTGKELVARAIHDLSPRAQKPFVSINCGAFTETLLESEL
                     FGYIKGSFTGATANRKGLFEAANQGTIFLDEIGDMSTAMQVKLLRVLQERKVRPVGAH
                     EEMEINTRVIAATNRDLTALVKDGAFREDLFYRVSVIPIELPPLRERGADIAELTEHF
                     IEKYCTQTGRAVSISGQAMRLLEAYSWPGNVRELEHTIERAVALEKTDTIQPERLPEQ
                     VTNYSQARIASELELPTDGINLTAHLDQLEKTYLLEALRRTEGNQTNAAELLKLTVRS
                     LRHLLDKHGVRGLTAQMRDERRSSDTIP"
BASE COUNT          743 a          864 c          885 g          628 t
ORIGIN      
        1 ttcaaacgat cggcctatcg gatgtctcgt ttctggtcgt gggattgctg gctgcgaaac
       61 tcgccgagcg ccagttacga tcagatgcgc aactcgcggc caccacacgg acgcttgccg
      121 atctgcgcgc gcttcacgag cgcatcgtcg aatcgatccg gtcaggagtg attaccaccg
      181 atctgcaagg acgcatttac accttcaacg cggccgccga agagatcacc ggccacaaac
      241 tggaagacgt gcgcggccat gaagcgtcaa tctttttcgg cgacatgacg cggcagattg
      301 ccgactcaat gagcgccgcc gcgagcggca aagtcagtcc gcggttccag gccgactgtc
      361 tcacgcccaa cggattggct ttgcgccttg gcttcagcat cgctccgctc tctggcgaat
      421 caggtgagac gagcggcgtg gtgatcacgt ttcaggacct gaccaacatt cgcgcgctgg
      481 aagagacttc gcgacgccag gatcgcctgg ccgctgtcgg ccgtctggcg gcgtcgattg
      541 cgcacgagat cagaaatcct ttggccgcga tgcgcggatc gattcagatg ctgcggtcag
      601 agatggacgg cgattcggaa cacgcgcagt tgatggagat cattctgcgc gagtccgatc
      661 ggctgaataa gatcgtcgcg gactatctca actatgcgcg gccccggccg gcggaactga
      721 acgacgttga cgtgtgcgcg ctggtccgcg agactctgaa attgctggaa aacagttcgg
      781 aagaaaccga tcgtcacacg ctcgatgcag acttgcccga ccagccagcg atcgcgaatg
      841 gcgatcctga gcagctaaaa caagtctgct ggaacattgc gcgcaatgct ctgaaagcga
      901 tgccggacgg cggaacattt cggatcgctc tgactgaagc gggcgcggat cgtttgcgtc
      961 tgtcgttcac ggataacggt tgtggcatga cgcccgaaca agtcgaacgt ctcttcgaac
     1021 cattctcttc gacgacgggc ggtaccggcc tcgggctctc gattgtctat cagatcattc
     1081 gcgaccataa tggtacaatc aacgtgagca gccgccaggg agaaggaacg acgattacga
     1141 tagagttgcc ggttagtcag taaagccagt actcattttc catttgtcat ttgacatttt
     1201 tcatttgaca tcgacacgta gtcttggaag gagaatgtga gccgtgcaat tgggaacagc
     1261 tatagcgaaa gacccgcaat cgcgcgctga tgaactagaa gaacggttga tcgactttgc
     1321 tgttcgaatt gtcagactgt ccgctcggtt gccaaaaact gcggctggtc gccacatcgc
     1381 tgcacaagtc ctcagatcag gaacatcgcc tgctccaaat tacggcgagg cgcgaggcgg
     1441 agaaagcgca gcagatttcg ttcacaaact tcgcatcgtt ctgaaggagc tgaacgaaac
     1501 atcgatctgg ctgcgcgtca ttgaacgaag tcatctcctg aagacggacc tgctcgctga
     1561 tatagttaac gagaattcgg aactctgcaa aatcttcact gcgtccctca agacagcgcg
     1621 tagccgaagc aaatgaaaaa tgtcaaatgt caaatgataa atggaaaatg attggttgtt
     1681 aaataatgtc gaatattctc atcgtcgatg atgaactgag catgcgtcaa ttcctgacgc
     1741 atctgtttca gcgtgacggc cacgatgtcc gtgttgccga gaacggtcgc caggcgatga
     1801 tgctattgcg tcagcagccg gccgacgtgg caatctcgga tgtgaagatg ccggacatgg
     1861 gcggcatcga actcttgcgc gcggcgcgcg agctgctgcc ggacatcgaa ttcgtgatga
     1921 tgacggcttt cgcgaacgtt gacacggcgc gcgaagcgtt tttgctgggc gcgttcgatt
     1981 tcattcaaaa gcctttcgac aacgatcttt tgaaggagat cgtggcgcgc gctttggcga
     2041 agatctctct ggtcaaagaa aagcaagcgc tgctggacga aaacgaagcg ctcatcaagg
     2101 gacaacgcgc acgcggcaag ctgggcaaca tcatcggaca atccgatcga atgcagtcgg
     2161 tctatcaaat gatcgaaacc gtcgcgcagg tgcaatcaac cgtgctcatc accggcgaat
     2221 cgggcaccgg caaagaactc gtcgcgcgcg cgattcacga tctcagccca cgcgctcaaa
     2281 agccattcgt ctcgatcaac tgcggcgcgt tcactgagac gcttttggaa tcagaattgt
     2341 ttgggtacat caaaggatct ttcacgggcg cgacggccaa ccgcaagggg ctgtttgaag
     2401 cagcgaatca aggcacgatc tttctcgacg aaatcggcga catgtccacg gcaatgcaag
     2461 tgaagctctt gcgcgtcctg caagagcgca aggtccgccc tgttggcgcg cacgaagaaa
     2521 tggaaatcaa cacccgagta atcgcggcga cgaatcgcga tctgacggcg ctggtcaagg
     2581 acggagcttt tcgcgaagac cttttctatc gcgtctcagt gattccaatc gaactgccgc
     2641 cgttgcgcga acgcggcgcg gacattgccg aactcaccga acacttcatc gaaaagtatt
     2701 gcactcagac cgggcgggcg gtatcgatta gcggccaggc gatgcgcctg ctcgaagctt
     2761 attcatggcc gggcaacgtg cgtgaacttg aacacacaat cgaacgcgcg gtggcgctgg
     2821 aaaagaccga cacgattcag ccggaacgac tgccggagca agtcacaaac tacagtcaag
     2881 cgcgcattgc ttccgagttg gagctgccga ctgatggaat caatcttacc gcgcacctcg
     2941 atcagcttga aaaaacttac ctgcttgaag cccttcgccg caccgaagga aatcagacga
     3001 acgccgctga gctcttgaag cttacggtac gttcgctgcg tcacctgctc gacaagcacg
     3061 gcgtgcgcgg actgacggcc caaatgcgcg acgaacggcg atcctcagac acgatcccgc
//
LOCUS       DASZZE010000017         6494 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_212404, whole genome shotgun sequence.
ACCESSION   DASZZE010000017 DASZZE010000000
VERSION     DASZZE010000017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6494)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6494)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6494
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_212404"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2178)
                     /locus_tag="VHD88_00260"
     CDS             complement(<1..2178)
                     /locus_tag="VHD88_00260"
                     /inference="COORDINATES: protein motif:HMM:NF024793.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HVS20241.1"
                     /translation="MAKEKRQTGPANGLPANALELAQPGTFFLRTKLLPPRPAPEILA
                     RPRLIERLHANLALPVTLVTANAGSGKTTLVADFLRKQERPYVWYQLDHTDADPAVFL
                     GYLAHGIQQQVSNFGDTMFAYLQQTGELAQRPERAVDVLLNEILERVEQQLIIVLDDY
                     HHLGAETPVHAVVDRLIAYLPDVIHVIIISRDIPPLTLARLRSQDSLSIIDRADLLFT
                     DEETQELFRRVFGLALTPEQLREYGERTHGWITALQLVRQVAQRQASGKHEHAPDPLA
                     VLHQSERDIFEYFAEEVFAAEPPEIQQYLARIALLDPIEVETCARLYPQARSSVALPA
                     LVRGNVFMTVASDARGEEYRLHPLFQSFLRRRLRAEIGLAGVAAEHSRCAEYFLERGA
                     WEQAVRHLLDAEDFDHAAQITAEHGTAWIASSKLASLAALAEALPAAALEAHPRALAH
                     RAEVARLRGEFDAAQNLFRRAAAALRDQGDQEGEAEALHSLATIARRRGDYDSAFNYL
                     DRAVELTAATSLVRTKCGNTRGLCLVSMSEWTAAEREFRVALQSAEERNDEHHVRLIT
                     HNLGLPAMVRGDFGEALHWLRRMLRTDSGEPPIPQEATAHLNIARCHLYRGEMDDCEQ
                     HLDRALERCQLFNLVGQRGETFEAYGNLYRERGELQRAAEFYERATRSYEEAGIDLAR
                     VELLEEQAFLSLKAGDFARARAQIDRLVELRPADKDEVGHFTAT"
     gene            complement(2348..3151)
                     /locus_tag="VHD88_00265"
     CDS             complement(2348..3151)
                     /locus_tag="VHD88_00265"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HVS20242.1"
                     /translation="MNRDEGQLIHEKIAVPDDRARPSRSRLLKLLDENLASYNATIIN
                     GRAGTGKTTLAADFARHSGRPVSWYKVDAADSDLRAFCEYLAATVQLRRPSIDSDRLL
                     QLTETVESDRAELLAEAFVFQLGESKAEPLLVVIEDLHLVYDADWVIPFFRRLLPLLP
                     ADVHLLITCRSLPPAPLWRLRSKQMLRVVDETELAFTLDEAVHLFEIYGLSEEHARIA
                     LRETNGRAAAITNFAATPGRAGRAVADSFLSLNTPGFKSLNNQTPDFQT"
     gene            3303..3650
                     /locus_tag="VHD88_00270"
     CDS             3303..3650
                     /locus_tag="VHD88_00270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20243.1"
                     /translation="MHSFSLQETGAGCKLCLASETRRGDAPMIKKALSFIFVLAAAAV
                     AVGQQPTPTPAKATPPAAPHTNLKVGDKAPDFTLASTATGQDGRSLRFKLSDFKGKKN
                     VVLAFYVLAFTGG"
     gene            3660..3980
                     /locus_tag="VHD88_00275"
     CDS             3660..3980
                     /locus_tag="VHD88_00275"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HVS20244.1"
                     /translation="MKAYQADIAKFEGTDTQIFGISVDSVYANREFAKQIGVTFPLLS
                     DFKRTVVKDYGIFNEEGGYGNRATFVIDKDGVIQHIDEGNVAIDPTSAEDSCNILTHK
                     KAAP"
     gene            complement(3981..5579)
                     /locus_tag="VHD88_00280"
     CDS             complement(3981..5579)
                     /locus_tag="VHD88_00280"
                     /inference="COORDINATES: protein motif:HMM:NF024853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HVS20245.1"
                     /translation="MNRVSRLALVLLTAIALTAVAAQSPRRGSTRPPKPTPVATSSIK
                     TTIPTAQPSPTSPTEIAPLTLAIVNDVTVTAADIQEQVNAAVLNDPDPYLRAFYDDRE
                     KAIKEARQRALDARISSILAGAEAKKRGLTPEEYLDREVNNRIVPPSDEEIRAAYDAN
                     RDQLGNADLESVRPTLVNFLRGQRSEQLYAALVNRLKMTNTVMKHADVNAPNLAPGIV
                     LAAVNGEPIRIEAINERMKVYVYKMEVRIYSAQKQALDKRVNNLLLIAEANKRNIGSE
                     EIFRTEITDKIKPPTEAEISKFYDENKARINRDLASARTSIAGYLEQEQQAKLETALA
                     EKLRAGAKVQVLLKEPEPSVMNVSTGNGPSRGDANAAVTIIEFTDFQCSSCGAMYPVL
                     EDVLKSYGNRVHFVIRDFPLTKLHENALRAAHAASAANAQGKFWEYIDILFKNQSTLD
                     VDSLKKYATQVGLDRKRFDAEFDSGKYDPDIRRDIEDGETYGVEGTPTIFINGVVLTP
                     AEYSADGLRAAIEKAFTRVQKRGQ"
     gene            complement(5612..>6494)
                     /locus_tag="VHD88_00285"
     CDS             complement(5612..>6494)
                     /locus_tag="VHD88_00285"
                     /inference="COORDINATES: protein motif:HMM:NF013252.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20246.1"
                     /translation="LDEISIRFPELHTPLAALTTDVIIDGEIITARGEEILPFSDLQK
                     RLGRKTVSEELLATTPVVFVAWDLLYCGEKVLISEPLVARRARLEEVVRTACGSGRLN
                     AGTLRLSQAKRFTDAAVLDDEFDAARARGNEGLMIKDPASFYKPGRRGREWLKLKKAL
                     ATLDVVVTTVELGHGKRRNVLSDYTFAVRRSEADGELLNIGKAYSGLTDAEIAEMTEW
                     FRAHTTREFAHGRVRVVEPRIVLEVTFDRVQPSKRHKGGYALRFPRIVRLRPDKTVDE
                     IDTIETVGKLAGTSIAS"
BASE COUNT         1310 a         1872 c         1876 g         1436 t
ORIGIN      
        1 ggtcgccgtg aagtgaccaa cctcgtcctt atcagccggg cgaagttcga cgagtcggtc
       61 gatttgtgct cgcgctcgcg cgaaatcacc ggctttgaga ctcaggaagg cttgttcttc
      121 cagcagctcg acccgagcca gatcgattcc cgcttcttcg taggatcgcg tggcccgctc
      181 gtaaaactcg gcggcgcgct gcaattcacc tcgctcgcga taaagattgc cgtaagcttc
      241 gaaggtctct ccgcgctgac ctaccagatt gaaaagctgg catcgctcga gagcgcgatc
      301 gagatgctgc tcacagtcat ccatctcacc ccggtaaaga tggcagcgag cgatgttcag
      361 atgggccgtg gcttcctggg gtattggcgg ctcgccgctg tcagtgcgca gcatacggcg
      421 caaccaatgc agtgcttcgc caaaatcacc gcgcaccatc gccggcagtc caagattatg
      481 cgtaatcagt cgaacgtgat gttcgtcgtt tcgctcttcg gcggactgca gcgcgacgcg
      541 gaactcgcgc tcggccgcgg tccactcgct catcgaaacc aggcacaggc cgcgcgtgtt
      601 tccacatttt gtccgcacca gcgaagtggc tgccgttaac tcgactgcgc gatctagata
      661 gttgaatgct gaatcgtagt cgccgcgccg gcgagcaatc gtggcgagag aatgaagcgc
      721 ttcggcctct ccttcttgat cgccctggtc gcgaagcgca gcggcggcgc gccggaaaag
      781 attttgcgcg gcgtcaaatt cgcctcggag gcgggctact tccgcgcgat gagcgagcgc
      841 gcgcggatgt gcttccaggg cagctgccgg caacgcttcg gccagcgcag ccagcgaagc
      901 aagtttgctc gacgcgatcc acgcggttcc atgttcggcg gtgatctgcg cagcgtgatc
      961 aaaatcctcg gcgtcgagca aatggcggac agcctgttcc caggcaccac gttccagaaa
     1021 gtattcggcg cagcgagaat gttcggcggc gacgcccgcg agtccaatct cggcgcgcaa
     1081 gcggcggcgc aggaaactct gaaacagcgg atgcaagcga tactcttcgc cgcgcgcgtc
     1141 actcgccacg gtcatgaaga cgttgccgcg caccagtgcc gggagcgcca ccgacgatct
     1201 ggcttgcgga taaagccgcg cgcaagtttc aacttcgatt ggatccagca aagcaatccg
     1261 cgcaaggtat tgttgaatct ccggcggttc ggcggcgaaa acttcttcgg caaagtattc
     1321 gaagatgtcg cgctctgatt gatgcaggac cgcgagcgga tcaggggcgt gttcgtgttt
     1381 gcccgacgcc tggcgttgcg ccacctgacg caccagttgc agcgctgtga tccagccatg
     1441 cgtgcgctcg ccgtattcgc gcaattgctc gggcgttagc gccagtccga atactctgcg
     1501 aaaaagctcc tgcgtctctt cgtccgtaaa cagcagatca gcgcgatcga tgatggacag
     1561 tgaatcctgc gagcgcagcc gcgcgagggt caacggcgga atgtcacgcg agatgatgat
     1621 gacgtggatg acgtcgggca ggtatgcaat caggcgatcg acgacggcgt gcaccggcgt
     1681 ctcggcgccg aggtgatgat aatcatccag cacgatgatc agttgctgct cgacacgttc
     1741 cagaatctcg ttcaagagta cgtcaactgc gcgctcgggc cgctgggcca gttcgcccgt
     1801 ctgttgcaga tacgcgaaca tcgtgtcgcc aaaattgctg acttgctgct ggattccgtg
     1861 agccagatag cccaggaaca ccgccgggtc ggcgtccgtg tgatcaagtt ggtaccaaac
     1921 gtaaggccgc tcttgtttac gcaaaaaatc ggcaaccagg gttgtctttc ccgaaccagc
     1981 gttagctgtt accagcgtca cgggcaatgc caggttcgcg tgcaggcgtt cgatcagacg
     2041 cggtcgcgcg agaatctctg gcgccggtcg aggcggcagc aattttgtgc gcaaaaagaa
     2101 cgtgcccggc tgcgcaagtt ccagcgcgtt ggccggcaac ccgttcgctg gcccggtttg
     2161 gcgtttctcc ttagccacta tcgtttccag tgtaaagttt tgcggactgc tgcggagagt
     2221 agcacagcca aaagcgcgag ttctatcggt gtcaggatag ttcgagggtg cggcgcctcg
     2281 cttgacccct gtgtggccag cggggggatc gatttgattc aggcattgcc tgcgagaact
     2341 ttgaccgtta tgtctggaaa tccggtgttt gattattcag agatttgaaa cccggtgtgt
     2401 tgagagacaa gaaactatcg gccaccgctc tgccggcgcg tcctggcgtc gctgcaaagt
     2461 tggtaatcgc cgcagcccgc ccgttggtct cgcgtaaagc aatccgcgcg tgctcttcgc
     2521 tgaggccgta gatttcgaac aaatgaacag cctcatcaag cgtaaacgcc agttctgttt
     2581 cgtcaaccac gcgcagcatt tgctttgaac gcaggcgcca caacggcgcg ggcggcaggc
     2641 tacgacaagt gattaacaag tgcacgtcgg cgggaagcag cggcagcaac cggcgaaaga
     2701 aaggaattac ccagtcagcg tcgtaaacta ggtggaggtc ttcgatgaca acgagcagtg
     2761 gctcagcttt gctttcgcct aactgaaaga caaaggcttc ggccaacagt tcagccctgt
     2821 cgctctctac ggtttccgtc agttgcaaca gtcgatctga atcgatagaa ggtcgccgca
     2881 gctgtacggt cgcggccaga tattcgcaga acgcgcgcag gtctgagtcg gcggcgtcaa
     2941 ctttgtacca ggacaccgga cgccccgaat gccgcgcaaa gtctgcggcc agcgtcgtct
     3001 tgccggtgcc ggcgcggccg ttaatgatcg tggcgttata agacgcaaga ttctcgtcca
     3061 acagtttgag caggcgcgag cgcgacggcc gcgcccggtc gtcgggaacc gcgatttttt
     3121 cgtggatgag ttgtccttcg tctctgttca taagcactgc gcggttgttc ttgtcagttt
     3181 cgagaaccca gaccaattgc gtcctgggac gacgcgatta tcggcaggac cccttgagga
     3241 attcttgagg tttgaaacca ggaccaaaac ggagactctt gaaatcagtc gaaggcgcgc
     3301 ttttgcacag cttttcgttg caggaaaccg gcgctggctg taaactctgc cttgcttccg
     3361 agaccagaag aggagacgcg ccgatgatca aaaaagccct tagctttatc ttcgtgctcg
     3421 cagcggctgc cgtcgctgtt gggcaacaac caactccaac tccagccaag gcgacaccgc
     3481 ccgctgcgcc ccacacgaac ttgaaagtcg gcgacaaagc acccgacttt acgctcgcaa
     3541 gcactgccac gggtcaagat ggaaggagct tgcggttcaa gcttagcgac ttcaaaggca
     3601 agaaaaatgt cgtgctcgcc ttttacgtat tggcgttcac cggtggttga acgaaggaga
     3661 tgaaggcgta tcaggctgat atcgccaaat tcgaaggaac tgacacgcaa atcttcggca
     3721 tcagtgtgga cagcgtttac gctaaccgcg aatttgccaa acagattggc gtcacctttc
     3781 cgctactcag cgatttcaaa cgcaccgtcg tgaaagacta cggcatcttc aatgaagagg
     3841 gtggctatgg taatcgcgcc acttttgtga tcgacaagga cggcgtcatc caacacattg
     3901 acgaaggaaa tgtggcaatc gatccgacca gcgccgagga ttcatgcaat atcctgacgc
     3961 acaaaaaagc ggcgccgtag ttactgacca cgcttctgca cgcgcgtaaa tgctttctca
     4021 atcgcggcac gcaggccgtc ggcgctgtat tccgccggtg tcagcactac gccgttaatg
     4081 aagattgtgg gcgtcccttc gacgccgtac gtttcgccgt cttcaatgtc gcggcgaatg
     4141 tccgggtcgt acttgccgct gtcaaattcc gcatcgaagc gttttcgatc tagcccaact
     4201 tgcgtcgcgt atttcttcag cgaatcgacg tcgagcgtgc tctggttctt gaacaagatg
     4261 tcgatgtact cccaaaactt tccttgcgcg ttcgcggcgc tcgcggcatg cgcggcccga
     4321 agagcgtttt cgtgaagttt ggtcagcgga aaatcgcgaa tcacaaaatg cacgcgattg
     4381 ccgtaagact tcaaaacgtc ttccaacacg ggatacatcg cgccacatga cgagcactga
     4441 aagtcagtga actcaatgat cgtgacggcc gcatttgcat cgccccgcga cggaccattg
     4501 cccgtgctga cgttcatcac ggacggctcg ggttctttca gtaagacttg cactttcgct
     4561 ccggcgcgta gtttttcagc cagtgccgtt tccagttttg cctgctgctc ctgctctaga
     4621 tagccggcga tgctcgtacg cgcggaagcc aggtcgcggt tgatgcgcgc tttgttctcg
     4681 tcgtagaact tggaaatctc ggcttcggtt ggcggtttga tcttgtcggt gatttccgtc
     4741 cgaaagattt cttccgagcc aatgttgcgt ttattcgctt ctgcaatcag caaaagatta
     4801 ttgacgcgct tgtcgagggc ctgcttctgc gctgaataga ttcggacttc catcttgtaa
     4861 acgtacacct tcatgcgttc gttgattgct tcaattctga tcggttcacc gttgacggcc
     4921 gcgagtacaa tccccggcgc gagattcggc gcgttcacgt ccgcgtgctt cattaccgtg
     4981 ttcgtcatct tcagtcgatt gaccagcgcg gcgtatagtt gctcgctccg ctgcccgcgc
     5041 aggaagttca ccagcgtagg ccgcacgctt tccaagtcag cgttgccaag ctgatcgcga
     5101 ttggcgtcgt aagccgcgcg gatttcttcg tcagacggcg gaacgatcct gttattgact
     5161 tcgcgatcta aatattcctc cggtgtcagt ccgcgcttct tcgcttccgc cccggcgaga
     5221 atggagctga tgcgcgcatc cagcgcccgc tgtcgcgctt ctttgattgc cttctcgcgg
     5281 tcgtcataaa acgcgcgaag atacgggtcg ggatcgttga gcacagccgc gttaacctgc
     5341 tcctgaatgt ccgccgccgt gacggtcacg tcgttgacga tcgcgagcgt cagaggcgca
     5401 atctcggtcg gcgaagtcgg cgatggctga gccgttggta tagtcgtctt tatggacgaa
     5461 gttgcaactg gggttggttt gggcggtcgc gtggatcctc ggcgaggcga ttgagcggcg
     5521 accgcggtca gcgcgatagc agttaggaga acaagggcga gacggcttac tcgattcatg
     5581 atggcatctt tttctggcgt ggctttagtt gtcaactcgc gatgcttgtt ccggctagtt
     5641 ttccaaccgt ctcgatcgta tcaatctcat caacggtttt gtctggacgc agacgtacga
     5701 tgcgcggaaa gcgcagcgcg tagcctccct tgtgccgctt cgacggctgc acgcgatcga
     5761 aagtgacttc caaaacgatg cgcggctcga cgacacgcac tcggccgtgc gcaaactctc
     5821 gcgtcgtgtg cgcgcgaaac cattcggtca tttccgcgat ctccgcgtcg gtcaatcccg
     5881 aataagcttt accgatgttc agcagttcgc cgtcagcctc tgaacgtcgc acggcgaacg
     5941 tgtaatccga cagcacgttg cgccgtttgc catgtcccaa ctcaacagtc gtgacgacga
     6001 cgtcgagcgt cgctaaagcc tttttcagtt tcagccattc gcgtccgcgc cgtcccggtt
     6061 tgtagaacga ggccgggtct ttgatcatca agccttcatt gccacgcgcg cgcgcggcgt
     6121 cgaattcatc gtcaagtacg gcagcgtcag tgaatcgttt tgcttgagac aagcgcaatg
     6181 ttccagcatt taaccgcccg ctaccgcagg cggttctgac tacctcctca agtcttgcgc
     6241 gccgcgccac gagcggttcg cttatcagaa ctttctcgcc gcagtacaag agatcccagg
     6301 ccacgaatac gaccggagtg gtcgccagca actcttcgct tacggttttg cggcccagac
     6361 gcttttgcaa gtcgctgaac ggcaaaattt cttcgccgcg cgcggtgatg atctcgccgt
     6421 cgatgatcac gtcggtggta agcgcggcca ggggcgtatg cagctcggga aatcggatcg
     6481 aaatttcgtc gagc
//
LOCUS       DASZZE010000018         1538 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_212423, whole genome shotgun sequence.
ACCESSION   DASZZE010000018 DASZZE010000000
VERSION     DASZZE010000018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1538)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1538)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1538
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_212423"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(634..>1538)
                     /locus_tag="VHD88_00290"
     CDS             complement(634..>1538)
                     /locus_tag="VHD88_00290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007154 - cell communication [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Calx-beta domain-containing protein"
                     /protein_id="HVS20247.1"
                     /translation="ASPRCDYENTIGTVQFAAGETSKSFSVAIVDDSYAEGNESFTVS
                     LTGASGTTLASQTAASVMIMDNDSANGADPIDDTNFFVRQQYIDFLGREPDPPGFDGW
                     VSTINNCSGDTTQCDRVHVSEAFFRSSEFQERGYFTYRFYSVGLGRKPDYAEFVPDLA
                     RVSGFLDASQLEAAKTHFVSDFMARPAFIAKYTGLSNSEYVNALCQTAGVTIPNQQDL
                     IDSLDNNSASRALVLRQIVESGEVSARYFNQSFAVMEYFGYLRRDPDAMYLNWIDVLN
                     QGGDSRSMVDGFVNSTEYRLRFGP"
BASE COUNT          321 a          447 c          432 g          338 t
ORIGIN      
        1 ctgacaagcg aagtcgagag cctcaaacaa gaagtagggc gtcttcgttc attgttaatt
       61 agcgttgctg gagaagatcg cgagggcgca taccgggctt caattgtcag ggaaatgctc
      121 gaagccgcga cggaacagcc cactcgcgaa tatgctggcc ctggctcact cctcaaacaa
      181 ctcacagacc cacgatgagg atcgtctata gcgacgcttt tctgaaaagc gctgccaaac
      241 tcccgcttgc caaccagaag aagcttgatg cgttactgag tctttgtgcc gagaatccgt
      301 ttcatcctag tttacatacc aaacggctgg tcggctcgtt gcatggattc ctgtcatttc
      361 gcgttacccg cgactggcga gtgttatttc aattcatcaa cgccgagacc gtgcaactgc
      421 ttagggttgc gcaccgtaag gatgtctatc gttgacagtt gagttcttgt cctaagcaag
      481 accgcgcagc tggcgctttc cttctcgcct gacggtcctc gttttgatcg ccgccggcac
      541 gcgaattcgc cacatggaaa taaggtacgg cagcgattga tagtcgctgc cgcactcttt
      601 ctcgcaaagc tgctgttcgt caggcctgtc gagctacggt ccgaatcgca gccggtactc
      661 ggttgagttg acgaacccgt cgaccatgct gcgcgagtct ccgccctggt tcaggacatc
      721 gatccagttt agatacatcg cgtccgggtc gcgtcgcagg taaccaaaat actccatcac
      781 cgcaaacgac tgattgaagt acctggcgga cacctcaccg ctctcgacga tctgacgcag
      841 gaccagggcg cgcgatgcgc tgttgttgtc cagcgagtcg atcaggtctt gctggttggg
      901 tatcgtcacg ccggccgtct gacacagagc gttcacgtat tccgagttgc ttaagccggt
      961 gtacttcgca atgaacgccg gccgcgccat gaagtcgctg acgaagtgag tcttcgcagc
     1021 ttccaactga ctcgcgtcca gaaagccgct cactcgcgcc aagtccggca cgaactccgc
     1081 atagtcaggc ttgcgtccca ggccaacgga gtagaagcga taggtaaagt acccgcgctc
     1141 ttgaaactcc gacgatctga agaaggcctc tgagacgtgg acccgatcgc attgcgttgt
     1201 gtcgccgcta cagttgttga tggtgctcac ccagccgtca aaccccggcg gatcgggttc
     1261 gcgcccgaga aagtcgatgt actgctggcg cacgaagaag ttcgtgtcat cgatcggatc
     1321 ggcgccgttc gcgctgtcat tgtccatgat catcacgctc gccgcggttt gtgaagccag
     1381 ggtcgtgccg gaagcgccgg ttaggctgac agtgaaagac tcgtttcctt ccgcgtacga
     1441 gtcgtcgacg atcgcgacgg agaacgactt ggaggtctcg ccggcagcga actgcacggt
     1501 gccgatcgtg ttctcgtagt cgcaacgcgg cgaagcca
//
LOCUS       DASZZE010000019         3110 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_130922, whole genome shotgun sequence.
ACCESSION   DASZZE010000019 DASZZE010000000
VERSION     DASZZE010000019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3110
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_130922"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..509
                     /locus_tag="VHD88_00295"
     CDS             <1..509
                     /locus_tag="VHD88_00295"
                     /inference="COORDINATES: protein motif:HMM:NF015901.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LptA/OstA family protein"
                     /protein_id="HVS20248.1"
                     /translation="HDEQRMEARGHVQSALYQAKQKTGNSTVVVPVFATAEFMRYSDP
                     DRLLHYETNVDIKQGTDRMTSEVSDVYLQKDNNEVERTIAQRNVVLTEPNKRGTGDWC
                     QYTTADEIAILKGNPAHVEDAEQGTTEGNRVTIYRRENRAVADDSRGEQSPGRVRSTH
                     KVTKSVKP"
     gene            523..1737
                     /gene="trpB"
                     /locus_tag="VHD88_00300"
     CDS             523..1737
                     /gene="trpB"
                     /locus_tag="VHD88_00300"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: protein motif:HMM:TIGR00263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HVS20249.1"
                     /translation="MKQATQPDALGHWGRYGGRFVPETLMAPLEELSAAFDAACADEN
                     FQKELDGLLRDYAGRPTPLSFAQRLTEHAKGARIFLKREDLLHTGAHKINNTLGQILL
                     ARRMGKRRIIAETGAGQHGVATATVCALFGLECVVYMGSEDMRRQALNVFRMQLLGAE
                     VREVDAGSRTLKDAINEALRDWVTNVADTYYLLGSALGPHPYPLMVRDFQSVIGRETR
                     AQILEKEERLPDCLIACVGGGSNSIGMFHSFLADESVRMIGVEAGGVGSELGQHAARF
                     NAAGGGRPGVLQGTMSYVLQDEHGQIATTHSISAGLDYPSIGPEHAFLHDAGRVEYTS
                     VSDAEALDAFQTLSKLEGIIPALESAHAVAHALKVAREMKSDQILIVNLSGRGDKDVD
                     TVRENLDSQKPR"
     gene            1878..2726
                     /gene="trpA"
                     /locus_tag="VHD88_00305"
     CDS             1878..2726
                     /gene="trpA"
                     /locus_tag="VHD88_00305"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: protein motif:HMM:TIGR00262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HVS20250.1"
                     /translation="MSRIEKTFADLKRESRRGFIPFITAGDPDLKTTRVLIVELARVG
                     ATVIELGVPFSDPMADGPVIQRASERALRHGFGMAEILEMVAGARKQTDVPIVLFSYF
                     NPLLQFCANKEADETSALPAFRFEKLAGEAKMVGVDGVLVTDLAPEEASEFAATLRAH
                     EIDMIFLVAPTSTDARLHMVAERASGFIYAVSRAGVTGAREEMSAEAERLVTRVRQFS
                     DLPVAVGFGISKPEHVADVWRYADAAVVGSAIVAEVEKLQGDSEMVSKTGRFTKQLMP
                     DQIRYS"
     gene            2730..2987
                     /locus_tag="VHD88_00310"
     CDS             2730..2987
                     /locus_tag="VHD88_00310"
                     /inference="COORDINATES: protein motif:HMM:TIGR02574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="addiction module protein"
                     /protein_id="HVS20251.1"
                     /translation="MGWYTETMATPVDELYEQASDLPPNERAALTGLLVDTLEGAVDP
                     DVERAWRQEVTRRVEELDSGAAQTVPWEQVREKLRKICGGL"
BASE COUNT          696 a          841 c          923 g          650 t
ORIGIN      
        1 ttcatgacga gcagcgcatg gaagcacgcg gccatgtgca gagcgcgcta tatcaggcta
       61 aacaaaagac cggaaattca actgttgtcg ttcccgtttt tgcgacggct gagttcatgc
      121 gctactccga tcccgatcgc ctgttgcact atgaaacgaa cgtggacatt aagcagggaa
      181 ccgatcgcat gaccagcgag gtctcagacg tttacctgca aaaagacaac aacgaagtgg
      241 agcgcacgat cgcgcagcgc aacgtcgtgc tgacagagcc gaacaaacgc ggcaccggag
      301 attggtgtca gtacacgacc gccgacgaga tcgcaattct gaaagggaac ccggcgcacg
      361 ttgaagacgc agagcaggga actactgaag ggaatcgtgt gacgatttat cgacgcgaga
      421 accgcgccgt cgctgacgat agtcgtggcg agcaatcacc gggtcgcgtg cgctcaacac
      481 acaaagttac taaaagcgtg aagccttaac catccttctt cagtgaagca agcaacccaa
      541 cccgatgcgc tcggacactg gggccgttac ggcggccgct tcgtgccaga gactttgatg
      601 gcgccgctcg aagaattaag tgcggcgttc gacgcagcgt gcgccgatga aaattttcaa
      661 aaggaacttg atggcttact gcgtgattac gcgggacggc cgactccgct ttctttcgcg
      721 cagcgtttga ccgaacacgc caaaggcgcg cggatctttc ttaagcgtga agatcttctg
      781 cacaccggcg cgcacaaaat caacaacact ctgggccaga ttctgctggc gcgtcgcatg
      841 ggcaagcggc gcatcatcgc cgaaaccggc gccggtcaac acggagtcgc gaccgccacc
      901 gtgtgcgcgc tgttcgggct cgaatgtgtc gtgtacatgg gttcggaaga catgcgtcgg
      961 caagcgctga acgtctttcg catgcaactg ctgggcgctg aagtgcgcga ggttgacgcc
     1021 ggctcgcgca ctctgaaaga cgcaattaac gaagcgctgc gtgattgggt gacgaacgtt
     1081 gccgacacct attatttgct tggcagtgcg ctgggtccgc atccataccc gctgatggtg
     1141 cgcgattttc aaagcgtgat cggccgcgaa acgcgcgcgc agattctgga aaaggaagag
     1201 cgactgccgg attgtctgat tgcctgcgtg ggtggcggat caaattcaat cggcatgttt
     1261 cattcatttc tcgccgatga atcagtgcgc atgatcggcg tggaagccgg cggcgtcggc
     1321 agcgaactcg gccaacacgc agcgcgattc aatgccgcgg gcggcggtcg tcctggtgtc
     1381 ttgcagggca cgatgagtta cgtgcttcag gacgaacatg gacaaattgc gacgacgcat
     1441 tcaatttccg cggggcttga ttatccttcg attggtccag agcatgcttt tcttcatgac
     1501 gcagggcgag tcgaatacac ctctgtttcg gacgcggaag cattggatgc ttttcaaacg
     1561 ctgtcgaagt tggaaggcat catccccgcg ctggaatccg cgcacgccgt cgcgcatgct
     1621 ttgaaagttg cgcgcgagat gaagagtgat caaatcctaa tcgtcaatct gtcagggcgc
     1681 ggcgataagg atgtggacac cgttcgcgag aatttggatt cccaaaagcc ccgctagggg
     1741 cgaaatatct atagatcgaa gcactcttaa tttttacaag ccccgcaggg gcgaaacatc
     1801 tacatgccgc tcctacggag cttaagtgtt cggggccaac aggagctata aatatttcgc
     1861 tcctacagag ctgtcgaatg tcgcgcatag aaaaaacttt tgccgatctg aagcgcgaaa
     1921 gccggcgcgg cttcattccc ttcatcaccg ccggcgatcc tgatctgaag acgacgcgcg
     1981 tactgatcgt tgaattggcg cgagttggcg cgacggtgat cgagcttggc gtcccgttca
     2041 gcgatccgat ggctgacggg ccggtgattc aacgagcttc cgaacgcgcg ctgcgtcatg
     2101 gcttcggcat ggcggaaatc ttggaaatgg ttgccggcgc tcgaaagcaa accgacgttc
     2161 cgattgttct cttcagttat ttcaatccgt tgttgcaatt ctgtgcaaac aaagaagcgg
     2221 acgagacgtc cgcgctccca gcattcagat ttgaaaagct cgccggcgaa gcgaagatgg
     2281 tgggcgtcga tggggttcta gtaaccgacc ttgcgcccga agaagcgagc gagtttgctg
     2341 caaccttgcg cgcgcatgag atcgacatga tctttctcgt cgcaccgact tcgacggatg
     2401 cgcgtttgca catggttgca gaacgcgcca gcggtttcat ttacgccgtc tcgcgcgcag
     2461 gcgtcaccgg cgcgcgcgaa gagatgagcg ccgaagccga acgtctcgtc acccgcgtgc
     2521 gccagttttc cgatttgccg gtcgcggttg gtttcggaat atcaaagcct gagcacgttg
     2581 ctgatgtctg gcgttatgcg gacgcggcgg ttgttggatc ggccatcgtg gcagaggtcg
     2641 agaagttgca aggagactcc gaaatggttt ctaagactgg acggttcacg aagcaactca
     2701 tgcccgatca aatccgttac tcctaaaaca tggggtggta cactgaaacc atggcaactc
     2761 ctgttgatga actttacgaa caggcatccg acttgccacc caatgaacgc gctgctctga
     2821 ccgggctcct tgttgatacc ctggagggcg ccgtcgatcc tgatgttgag cgagcctggc
     2881 gccaggaagt cacaaggcgc gttgaagaat tggattccgg cgcggcgcaa actgttccct
     2941 gggagcaagt ccgcgagaag cttcggaaaa tctgtggcgg gctttaagct ttgttccctc
     3001 tccctttggg agggttaggg agagggcgcg agtgtggcac ctaagtccct caccccagcc
     3061 ctctcccaag gggagaggga gttttttaac agcaacccca gtggcgaacg
//
LOCUS       DASZZE010000020         2042 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_114715, whole genome shotgun sequence.
ACCESSION   DASZZE010000020 DASZZE010000000
VERSION     DASZZE010000020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2042)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2042
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114715"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..215
                     /locus_tag="VHD88_00315"
     CDS             <1..215
                     /locus_tag="VHD88_00315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20252.1"
                     /translation="KASKARRESESVQRRDEAASAVQSVLTGRGRTKKGIETIRDGAV
                     VSQTLKIESACLNRYRIGFCRRRNRY"
     gene            complement(457..1089)
                     /gene="rsmG"
                     /locus_tag="VHD88_00320"
     CDS             complement(457..1089)
                     /gene="rsmG"
                     /locus_tag="VHD88_00320"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: protein motif:HMM:NF014575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA];
                     GO_process: GO:0046118 - 7-methylguanosine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HVS20253.1"
                     /translation="MPTAVEQFGAALTADAGAFGIQPDSDVVARLCDYYELLLKWNSR
                     LHLVAPCTPAEFATRHVLESLVLLRHLPQNARVVDVGSGAGLPIIPCLIARPDLHGTL
                     IESSQKKSVFLREALRLVGANERIRLVAARFEETVAPEADFVTSRALDRFQDLLPSLI
                     DWAPKKSKFLLFAGEALRSQIETLLPSARAELLPKSERRFLIIASRQVSV"
     gene            1151..>2042
                     /locus_tag="VHD88_00325"
     CDS             1151..>2042
                     /locus_tag="VHD88_00325"
                     /inference="COORDINATES: protein motif:HMM:NF012503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HVS20254.1"
                     /translation="MTSKSLSEQHERLGRAVTKVISEHAAQLDSVPVTSPATPADLER
                     LFDEPLPVAGMSAEEILDQFSRDVVPHAMQVPSPRYFGQFNPTPLAIGVWADALCSAL
                     NQNAGAWRNGPTSALLETQVLRWLCELIGYGQQAFGTLASGGSEANLIALKCARDSVD
                     ANIRGGGMRTGHGELVVYASEQCHFSLEKSLDILGMGRKSLRKIETDERYHIRLDLLR
                     EQIERDRREGRIPCCLVGMAGATSTGVVDPLEDLAAIAKENKCWFHVDAAYGGGLAFS
                     EEHKHKLHGIELADSITFDPH"
BASE COUNT          469 a          558 c          594 g          421 t
ORIGIN      
        1 ccaaagccag taaagcccgt cgtgaaagtg agagcgttca gcgtcgcgac gaagctgcca
       61 gcgctgttca gagtgtgcta actggacgcg gccgcacgaa aaagggaatc gagaccattc
      121 gcgacggtgc cgttgtttcc caaaccctga agattgaatc cgcctgtctg aatcgttatc
      181 ggatcggctt ttgccgccgg cgcaatcgct attgacacca gtaaaaaagc caagccaagg
      241 ccggctttag ttagcagacg catcttagtt ctccctgcct tccatcaaac ttacaaaacg
      301 cgccgaatgc gttgcccttg gcttcggggc gctcacggag acgattgaga agaaaactgt
      361 agatagggaa aagcaataat cgtggtcctc ttccagaaaa tcgtcgacgg tttttctggt
      421 tgcttccgag aaggagtgcc tgagctggcc ttaggatcag acggagacct ggcgcgaggc
      481 gataatcaga aagcgccgct cggatttagg aagcagttcg gccctggcgg atggcaacag
      541 cgtttcgatt tggcttcgca gcgcttcgcc tgcgaagagc aagaacttgc ttttcttggg
      601 tgcccagtcg atcagcgaag gcagaaggtc ctgaaaacgg tcgagggctc gagacgtgac
      661 aaagtcagcc tctggcgcaa cagtctcttc gaatcgcgcc gcaaccaatc ggattcgctc
      721 attcgcaccg acgagccgca aagcttcgcg cagaaagact gacttcttct gcgatgactc
      781 aattagcgtt ccgtgaagat caggtcgggc aatcaggcaa ggaatgatcg gcaagcctgc
      841 acctgaaccg acatcgacga cgcgcgcatt ctggggcaaa tgccgcagca gcacgagcga
      901 ctcgagcacg tggcgggtgg cgaattctgc aggagtgcaa ggcgcaacaa gatgtagccg
      961 cgaattccat ttcagcagca attcgtagta atcgcacaac cgcgcgacca catcactgtc
     1021 tggttgaatc ccaaaggcgc cggcatcagc cgtcagagcc gcgccaaatt gttcgaccgc
     1081 tgttggcatt tctttgcttc ttctggttag atttgaacct gtaggccaaa tctaataacc
     1141 cgaagataac atgaccagca agtctttgag tgaacagcac gagcgcctgg gccgagccgt
     1201 gacgaaggtg attagcgagc acgccgcgca actcgattct gtgccggtga cttcgccggc
     1261 gacgcctgcg gatctcgaac ggcttttcga tgagccgttg cccgtggcgg gaatgtccgc
     1321 cgaagaaatt ctcgatcagt tttcgcgtga tgtggtcccg cacgctatgc aggttcccag
     1381 cccgcgctac ttcggccagt tcaatcccac gccgctggcg attggcgtgt gggcagacgc
     1441 gctttgctcg gcgctaaatc aaaacgccgg cgcgtggcgc aacggaccaa catcggcatt
     1501 gttagaaacg caagtgctgc gttggttgtg cgagctgatc ggttacgggc aacaggcgtt
     1561 cggcactttg gctagcggtg gctcggaagc aaatctgatc gctttgaaat gcgcccgcga
     1621 ctccgttgac gcgaacattc gcggtggcgg aatgcgaacc ggccatggcg agttggttgt
     1681 ttacgcctca gagcaatgcc atttttccct ggaaaagagc ttggacattc tcggcatggg
     1741 tcgcaagagc ctgcgcaaga tcgaaaccga cgaacgctat cacattcgcc tcgatctact
     1801 gcgcgagcag attgaaaggg atcggcgcga aggccgcatt ccgtgttgcc tcgtcggcat
     1861 ggcgggcgcg acttcgaccg gagtggtcga tcctctggag gacttggcgg ccatcgcgaa
     1921 ggaaaacaaa tgctggttcc acgtcgatgc cgcatacggc ggcggtttgg ctttctcaga
     1981 agagcacaaa cacaagctgc acggaattga attagcagat tcgatcactt tcgatccgca
     2041 ta
//
LOCUS       DASZZE010000021         1967 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_228583, whole genome shotgun sequence.
ACCESSION   DASZZE010000021 DASZZE010000000
VERSION     DASZZE010000021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1967)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1967)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1967
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_228583"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..678
                     /locus_tag="VHD88_00330"
     CDS             <1..678
                     /locus_tag="VHD88_00330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20255.1"
                     /translation="LNQIRRNGIERGRQTRVGADGRAEENRYELRFVRGDKSEKDKIR
                     IDNKTPQAEYSLIYGEGRIFGIINGSPFTPRADATAAFTSQQAHSIDALLRYKENESK
                     LSAAGKDKHQGIDVYLLDLTDKANRKTRYFVSAKSFRVLWLEYEETPPGAAAAVKYTK
                     HFYEYRLAQGTQVPYRTVLLEDGKQTSETRILTITFGVKMEDALFKNPEAPAAAGNPE
                     QTVGSRQ"
     gene            946..1596
                     /locus_tag="VHD88_00335"
     CDS             946..1596
                     /locus_tag="VHD88_00335"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HVS20256.1"
                     /translation="MRTLSSINELDFATAMRSAVVVQPASDHALLEGTLAGDEDAFAE
                     LVGRYRNKITSYIYRMTNDYDGAVDLAQETFLRVYRAAGRYQTTHAFSTYIYRIATNL
                     AISELRKRKRRRLVSLTGLLTSNDGQEARDFDAADERPLQDVSLVDSERRKVVKRAIA
                     TLPEKYRAPLVLRDVEGKSYDEIAAILRTSEGTVKSRINRARNFLRDKMRNYVQVV"
     gene            1664..>1967
                     /locus_tag="VHD88_00340"
     CDS             1664..>1967
                     /locus_tag="VHD88_00340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20257.1"
                     /translation="MNQSLSDQVLAHVTTCASCREFRDERASLRELVGNLGPVTAPAD
                     FDMRLRVRMAAERQSQARSVLFAGFRVSTPAIAVAALFVVCAASIVWFVEHHRNQTP"
BASE COUNT          458 a          521 c          615 g          373 t
ORIGIN      
        1 ttgaaccaga ttcgtcgcaa cggtattgag cgcgggcgac agacgcgcgt tggcgcggac
       61 ggacgcgccg aagagaatcg gtatgaattg cgctttgtgc gcggcgacaa gtcggagaaa
      121 gacaaaattc gcatcgataa caagacgccg caggcggagt actcactgat ctatggcgaa
      181 ggccgcatct ttggcatcat caacggctcg ccgtttacgc cgcgcgccga cgctaccgca
      241 gcgttcactt cgcaacaggc gcacagcatc gacgcgctgc tgcgttacaa agaaaacgaa
      301 tcaaagttga gcgcggccgg caaggacaag catcagggca tcgatgtcta tctgctggac
      361 ctcacggata aagccaatcg caagacgcga tatttcgtta gcgcaaaatc cttccgcgtg
      421 ttgtggctgg aatatgaaga gacgccgccc ggcgcggctg cggctgtgaa atacacgaag
      481 catttctatg aatatcgcct ggcgcagggc acgcaggtgc cttatcgaac ggtgctgctc
      541 gaagacggca agcaaacttc ggaaacgcgc atcctcacga ttacctttgg cgtgaagatg
      601 gaagacgcgc tgtttaagaa tccggaagcg ccggctgcgg cagggaatcc ggaacaaaca
      661 gtaggcagta ggcagtaggc agcagaacag tctcaagtct caagcaatca gcaatgagtt
      721 gtcacgatta accctcctca gacacgaccg gcaaggatgc cggcgctccg ccgacagaga
      781 tgtcggcgct cctaacgcta aatttgggaa ccggaaagcg agccgcgcgt gtgtactccg
      841 tggccgtcgc gggctaagtg tataatttgg cccgtaaagc aaagcgaccg gcaaggatgc
      901 cggcgctcct gacgcgagac aaacgaacca gagcctgcct gcccgatgag aacgctgagt
      961 tcgatcaatg agctggattt cgccacggcg atgcgttcgg cggtcgtggt ccagccggcg
     1021 tcagaccacg ctttgctgga aggcacgctg gccggcgacg aagacgcgtt cgccgaattg
     1081 gttggccgct atcgaaacaa gattacgagt tacatctatc gcatgacgaa cgattacgac
     1141 ggcgcggttg atttggcgca agagacgttc ttgcgcgtct atcgcgcggc gggtcggtat
     1201 caaacgacgc atgcgttctc gacttacatc tatcgcatcg cgacgaacct ggcgatcagc
     1261 gagttacgca aacgtaagcg gaggcgtttg gtttcgctga caggtttgct tacttcgaac
     1321 gatggtcagg aagcgaggga cttcgacgct gccgacgagc ggcctttgca ggacgtgagt
     1381 ctggtcgatt cggaaagacg caaggtggtg aaacgcgcca tcgctacttt gcctgaaaag
     1441 tatcgcgcac cactcgtgct gcgcgatgtg gaagggaaaa gctatgacga gattgccgcg
     1501 atcctgcgca cgagcgaagg aacggtgaag tcgcgcatca atcgcgcgcg aaattttctg
     1561 cgcgacaaaa tgcgcaatta cgtccaggtg gtgtaaacat ggtggtgtaa acatgaatgg
     1621 taaggaatgc cgcgccacgc ggcgagaaat cgatcagtcg gaattgaacc aatccttgag
     1681 cgatcaagtg ctggcgcacg ttacgacctg tgcgtcgtgt cgtgagtttc gcgacgagcg
     1741 cgcaagcctg cgcgagctgg tgggaaatct cggaccggtg acggcgccgg cggattttga
     1801 tatgcgtctg cgcgtgcgga tggcagcgga acggcaaagc caggcgcgct cggttctctt
     1861 tgcaggattt cgcgtgagca cgccggcaat cgcggtggcc gcgctgttcg tcgtctgtgc
     1921 ggcgtcgatc gtttggttcg ttgaacacca cagaaatcag acgccgg
//
LOCUS       DASZZE010000022         2850 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_277696, whole genome shotgun sequence.
ACCESSION   DASZZE010000022 DASZZE010000000
VERSION     DASZZE010000022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2850)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2850)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2850
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277696"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1455
                     /locus_tag="VHD88_00345"
     CDS             <1..1455
                     /locus_tag="VHD88_00345"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HVS20258.1"
                     /translation="LPRRRKSKESRLSTQSPQAKPFAAQMSEWLKERFYESRALQYPY
                     ASWMDLQSRAALFRGRSYEATSRLLHLWKQMGTDRFGAERKARLMELVRANCYRGDEL
                     LPAAENRLRLEFIRSPEAKEVRKIYGSFAPEHHVRLRFPNDDDPERQGDLMILKTYDA
                     ATGERGVLLVKYSEAILAMAAAYDLGALASRYMLIIEPSWWGYQDARFFLYLGSDLDV
                     LVQSPRRADFEFIEELHTNLVPARVGAGEWSDPTIFRPREAGKEATYDIVMVAAWDPF
                     KRHEVFFRAASQLKRQHGRKLRIALIGYELTWTRAEIERLLNQFDLQGDCTIYEDIPH
                     EEVARVVSDSKASLLLSQREGANKALYESMFCGTPAIVYRHQCGVNLDHVNASTGMLA
                     DDDELADAIVHVLDHHDDFDPRGWAMEHAGYSNATRKINATLSEIANRRGLPWTRDIV
                     AKKNAPNLRYAESGVYQQFQGEYERLKGYLLPLD"
     gene            1480..2397
                     /locus_tag="VHD88_00350"
     CDS             1480..2397
                     /locus_tag="VHD88_00350"
                     /inference="COORDINATES: protein motif:HMM:NF017532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HVS20259.1"
                     /translation="MRSLKEFPARPGAAHDRTPLWRVSEVDALASALELDGIVALPNI
                     SPEQLRSMQKAFEVRLRRMRWNNFEGYQQTELFRHVIEDVLLLEQGFVDLALHPLVKQ
                     ILKRYLGTNYELTEAKGWKSLPTKRDFHGWHGDSWYDKAIAKEIHREVKLALYLTDVR
                     SGAFTFIKSSHQKHHPRDLRRDEVDDLRLSQLVEMKGSAGTVFMFDSSAIHRQGIPML
                     ESRQAVFYAYHDPSVLLQAEDVDYYRYHPLLLNAAFLGDLSAEDQRILGFGNKTNFQA
                     AFERLDRPSFAIAPLILRSKRKFVCDGCA"
     gene            2595..>2850
                     /locus_tag="VHD88_00355"
     CDS             2595..>2850
                     /locus_tag="VHD88_00355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20260.1"
                     /translation="MLCFLCEPTEEVRRFLDLENISFEVLANSTNGSWSARRNLMRII
                     GKHRPEILHLHFVSFLNLYSWSARLQSVNQVFFTDHHSRPA"
BASE COUNT          642 a          777 c          795 g          636 t
ORIGIN      
        1 ctgccgcgcc ggcgcaagtc aaaggagagc cgcttgagca ctcaatcacc acaagccaaa
       61 ccgttcgccg cgcaaatgtc ggaatggttg aaagagcgct tctacgaatc gcgcgccctg
      121 caatatccct acgcgtcatg gatggatctg caatcgcggg ccgcgctttt tcgaggacga
      181 tcttatgaag cgaccagccg gctgctgcac ctgtggaagc agatgggaac ggaccgcttc
      241 ggtgcagagc gcaaggctcg gctgatggaa ctcgtgcgcg cgaattgtta tcgcggtgac
      301 gagctgcttc cggcggctga gaatcgtctg cgtctggaat tcattcgctc gccggaggcg
      361 aaagaggtca gaaaaatcta cggctcgttc gccccagagc atcacgtgcg tttgcgcttt
      421 ccgaacgatg acgatccgga gcggcaaggc gatttgatga tcttgaaaac gtatgacgcg
      481 gcgacgggcg agcgcggcgt gttgttggtg aaatacagtg aagccatact ggcgatggcc
      541 gcggcttacg atctcggcgc gctggcttcg cgatacatgc tgatcattga gccgagctgg
      601 tgggggtatc aggacgcgcg gttctttttg tacctgggct ctgatttgga tgtactcgtc
      661 caatcgcccc gccgtgctga ttttgagttt attgaagagc ttcacactaa tcttgtgccc
      721 gcacgcgtcg gcgccggcga atggagcgac ccgactatct ttcgcccgcg cgaagccggc
      781 aaagaagcaa cttacgacat agtgatggtg gcagcttggg atcctttcaa gcgtcacgaa
      841 gttttcttcc gcgccgcttc gcaactgaag cgacagcacg ggcgaaagct gcgcattgcg
      901 ctcatcggtt acgaattgac ctggacgcgc gcggaaatcg aacgcctgct gaaccaattc
      961 gatctgcaag gcgattgcac aatctacgaa gacattccgc acgaagaagt cgcgcgcgtt
     1021 gtgtcggact caaaggcatc gctgcttctc tcgcagcgag aaggcgcgaa caaagctctg
     1081 tatgaaagca tgttctgcgg cacgcctgcg attgtttatc gccatcaatg cggcgtgaat
     1141 ctcgatcacg tgaacgcgag cactggaatg ctcgccgatg acgacgagct ggctgacgcg
     1201 atcgtccacg ttctggatca tcacgacgat tttgatccgc gcggctgggc gatggagcat
     1261 gccggttatt cgaacgccac ccgaaaaatc aacgcaacgc tttcggaaat agcgaatcgt
     1321 cgcggccttc cctggaccag ggacattgtg gcgaagaaga atgcgccgaa cctgcgttat
     1381 gccgaaagcg gcgtctatca gcaatttcaa ggagagtatg agcggctgaa gggttacttg
     1441 ctgccgctcg attaacttcg cggaaaagaa accgaagcga tgagaagcct caaagaattt
     1501 ccggcacgtc ctggagccgc ccatgaccgc acgccgttgt ggcgggtttc ggaggttgat
     1561 gctttggcgt ccgcactcga acttgacggc atcgttgcgt tgccgaacat cagccccgaa
     1621 caattgcgga gcatgcagaa agctttcgaa gtgcgtctgc gccgaatgcg ctggaacaac
     1681 tttgaagggt atcagcagac cgaactattt cgtcacgtga tcgaagacgt cttactgctc
     1741 gaacagggct ttgtcgatct cgctttgcat ccattggtca aacaaatcct gaagcgatat
     1801 ctcgggacga attacgaatt gaccgaagcg aagggttgga aatctttgcc gactaagcgc
     1861 gactttcacg gttggcatgg cgactcgtgg tacgacaaag cgatagcaaa agagattcac
     1921 cgggaagtca aactcgcttt gtatctcacc gacgtgcgca gcggtgcttt cactttcatc
     1981 aagagcagtc accagaagca ccatccgcgc gatttaagga gagacgaagt tgatgacctg
     2041 cggctctctc aactcgtaga aatgaaaggt tcggccggaa ccgtcttcat gtttgatagt
     2101 tccgcgattc atcgtcaggg aattcctatg ctcgaatcgc ggcaagcagt cttctatgcc
     2161 tatcacgatc cgagtgttct gctgcaagcg gaagacgttg actattatcg ttaccatccg
     2221 ctgctgttga acgcggcgtt tcttggcgat ctttctgccg aagaccaacg cattctgggc
     2281 tttggcaaca agaccaactt tcaggcggcg ttcgaacgac tcgatcgtcc gagcttcgct
     2341 atcgcgcctt taattcttcg ttcaaaacgc aaattcgtct gcgacggctg cgcatgaaaa
     2401 cgtctgccag gttgaaacga ctcgtgggcc tgacttaaca acctccacga gcccgcaacc
     2461 atacggccac ccatccatcc gaaaacacat gccgacgtta ctttcagtgt ttggagtcaa
     2521 gccgctgcgc atcggaggca ccgaaacctt cgcgcgagag ctttcgctcc aacttagcga
     2581 gcacggctgg aagcgtgctc tgctttctct gcgagccgac cgaagaagtg cggcgctttc
     2641 tcgatcttga aaacatctcg tttgaagttc tcgccaactc gacaaatggt agttggagtg
     2701 cgcgccggaa tctgatgcga atcatcggga agcatcgccc ggagattctg catcttcact
     2761 tcgtcagctt tctgaatctc tattcatgga gtgcccggct tcaatcggtg aatcaggtct
     2821 ttttcaccga tcatcattcg cgtccggccg
//
LOCUS       DASZZE010000023         1956 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_244954, whole genome shotgun sequence.
ACCESSION   DASZZE010000023 DASZZE010000000
VERSION     DASZZE010000023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1956)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1956)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1956
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244954"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..714
                     /locus_tag="VHD88_00360"
     CDS             <1..714
                     /locus_tag="VHD88_00360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20261.1"
                     /translation="EGGAFDEASVKDYPTAEMLERHLLLATDNGSEIVPTVGGLLLFG
                     RDESVARLLPRAQVIATRFGGDTNQSPVIERIELTGNLATIYESALRFVTRYCDLQET
                     RVARSAGNIADDAPVPARANYHRDVMPEAIANALVHRDLALRELTTRLHIFDRSIEIV
                     NPRRSAGFAPAALRAIRFGAPQRLNPQLASIFSSPAYGLTQARGGLPMLLREARRFSN
                     RLPDIAAFNDEFRLRLHGV"
     gene            791..1189
                     /locus_tag="VHD88_00365"
     CDS             791..1189
                     /locus_tag="VHD88_00365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20262.1"
                     /translation="MRKHLLLTLAALVFLALSIQSDAILCRTAATSQTKAIPAPEDVL
                     GFRPGDDRKLASWAKVVEYFQKLAAASDRVKLEEIGKSTMGAPFVYATISAPENLKRL
                     DEYKEIQRQLADPRILGSRIPRSPIAKRER"
     gene            1186..>1956
                     /locus_tag="VHD88_00370"
     CDS             1186..>1956
                     /locus_tag="VHD88_00370"
                     /inference="COORDINATES: protein motif:HMM:NF012471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004181 - metallocarboxypeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M14 family zinc carboxypeptidase"
                     /protein_id="HVS20263.1"
                     /translation="MIARGKTIVAITCGIHSTEVGSYLSSMLIAYRLASSNEPEIQEI
                     LRNTIILLVPSTNPDGVDIVNNWYQKTLGTPYEGTDPPELYHKYTGHDDNRDWYAFTQ
                     VETQLVVDKILNVWHPQIVHDIHQQGAFGSRLFLPPYMQPVEPNVPKQIVEGYTELGN
                     YIAKEMRGAGFKGITTDSTYDAWSPSRAYSHYHGGVRILQETASCRLATPITVKFEQL
                     RPGEGYDPRKEAANFGPVWQGGEWHLHDITNTMTTVAFF"
BASE COUNT          424 a          584 c          529 g          419 t
ORIGIN      
        1 gaaggcggcg cgttcgacga agcgagcgtc aaagattatc ccaccgccga aatgcttgaa
       61 cgtcatctgt tgctggccac cgataacggc agtgagatcg tgccaacggt gggtggcctg
      121 ctgctgtttg gccgtgacga aagcgttgcc agactcttgc cacgcgccca ggtgattgcg
      181 actcgctttg gcggcgacac gaatcagtcg ccggtgatcg aacgcatcga actcactggc
      241 aatctggcga ccatttacga atcagcgttg cggttcgtca cccgttattg tgacctgcaa
      301 gagacccgag tggcgcgaag cgcgggtaac attgcggatg atgcgccggt tccggcacgc
      361 gcgaactatc atcgcgacgt catgccagaa gcgatcgcca atgccctggt gcatcgcgat
      421 ctggccttac gcgagttaac cacgcgtttg cacatcttcg atcgttctat tgagatcgtt
      481 aatccgcgac gcagcgccgg ctttgcacct gctgcattaa gagcgatccg ctttggcgcg
      541 ccgcagcgtt tgaatcctca gcttgcgtca atcttttcca gtcccgcgta cggtttgaca
      601 caggcgcgtg gcggcttgcc aatgctgctg cgcgaagcac gccggttctc aaatcgtctg
      661 cccgacatcg ccgccttcaa cgacgaattc cgtttgcggc tgcacggggt ttaatttctc
      721 tgtgttctcc gtgtcctctg tggtaaagga gcatttttga accacagagg acgcagagga
      781 attcaaacaa atgcgaaaac accttctgtt aacgcttgct gcgcttgtct ttctcgctct
      841 ctcgatccaa tccgacgcga ttctttgtcg aaccgctgcg acctcgcaaa ctaaagcgat
      901 tcctgcgccc gaagacgtgc tcggctttcg tcccggcgac gatcgcaaac tcgcaagctg
      961 ggccaaggtg gtcgagtact ttcagaagct cgccgccgct agcgaccgtg tgaagcttga
     1021 agagattggc aaatcgacca tgggcgcccc gtttgtttac gcgacgatta gcgcgccaga
     1081 gaatttgaaa agactcgatg aatacaaaga gattcagcgc caactcgccg acccgcgcat
     1141 tctcgggtca cgaatcccgc gctcgccgat cgcaaagcgc gagcgttgat tgcgcgcggc
     1201 aagactatcg tcgcgatcac ctgcggcatt cattcaaccg aagtcggctc gtatctttcg
     1261 agcatgctaa tcgcttatcg attggcttct tctaacgagc cggagattca ggagattctg
     1321 cgcaacacga tcatcctgct tgtaccttcg acgaatcccg atggagtgga catcgtcaac
     1381 aactggtacc agaaaacgct gggcacgcct tacgaaggca ccgatccgcc tgagctgtac
     1441 cacaagtaca ccggccacga cgacaatcgc gattggtacg cgttcacaca ggtcgagacg
     1501 caacttgtcg tcgataagat tctcaacgtc tggcatccgc agatcgtcca cgacattcac
     1561 cagcagggcg ctttcggctc gcgtctgttc ctcccgcctt acatgcaacc ggtcgagccg
     1621 aacgtgccga aacagatcgt cgaaggctac accgaactcg gcaactacat cgcgaaagaa
     1681 atgcggggcg cgggcttcaa agggattaca actgattcta cttacgacgc gtggtcacct
     1741 tcgcgtgcgt attcgcatta tcacggcggc gtgcgcatct tgcaggaaac cgcgtcgtgc
     1801 cggctggcca caccaatcac ggttaagttc gagcaactgc gtccgggcga aggttacgat
     1861 ccgcgcaaag aagctgcgaa cttcggcccc gtgtggcaag gcggcgaatg gcacctccac
     1921 gacatcacca acactatgac aaccgtggcg ttcttt
//
LOCUS       DASZZE010000024         5058 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_163441, whole genome shotgun sequence.
ACCESSION   DASZZE010000024 DASZZE010000000
VERSION     DASZZE010000024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5058)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5058)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5058
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163441"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..241
                     /locus_tag="VHD88_00375"
     CDS             <1..241
                     /locus_tag="VHD88_00375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20264.1"
                     /translation="GARLLIVASGLGVQAGLEERFSSRDYGAKEPSASVCWAVHASTP
                     FTAQFALVSVGPNEDESERLGLSRPTNFGNADQVG"
     gene            404..2335
                     /gene="asnB"
                     /locus_tag="VHD88_00380"
     CDS             404..2335
                     /gene="asnB"
                     /locus_tag="VHD88_00380"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HVS20265.1"
                     /translation="MCGICGVWEYGAAEGRVERALVERMRDVMTHRGPDDAGELIFDE
                     ARGGFGFRRLSIIDLSEAGHQPMHGCTDRVWLVFNGEIYNHAELRKGLEQRGHVYASR
                     TDSETILHLYEERGLDFVQEIEGDYAIALWDADRERLVLARDRAGVKPLYFHQQNGRF
                     IFGSEIKAILEHPAVTAEVNEEALYHYLTFVTTPAPQTLFRGVQKLPAGHLLVINRTG
                     EARITQYWDALPPASPVVRSEEEHQKSILELLRASIKKRMMADVPFGVFLSGGVDSSA
                     NVALMSELMTQPVRTFTVGFHDTEELNELESAREISKRFGTDHHEVMIGRAEMMKFLP
                     ELVFHQDEPIADPVCVPLYYVSKLARDTGTIVVQVGEGSDEIFGGYDWFRTYLNIEKR
                     FWRHAERAPLAVRHAAAVIAKPLVRKVMKKRMASELVRRLGANESLFWGGAVVFDETM
                     KPSVLSPEMRARYNGLSTYNVVRQYQETIAAARPDSDYAARMTYLELKLRLPELLLMR
                     VDKITMATSVEARVPFLDHHLIEYAMGLPRNLKVKGATGKHILKRALESVLPADVLYK
                     PKRGFGAPVREWFRGPEGESLVQQLMNSSIRERNFFDYSFIQRMADEHARETRDWSAN
                     LWCLLNLSLWYDHWIAPAN"
     gene            2353..3747
                     /locus_tag="VHD88_00385"
     CDS             2353..3747
                     /locus_tag="VHD88_00385"
                     /inference="COORDINATES: protein motif:HMM:NF024832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligosaccharide flippase family protein"
                     /protein_id="HVS20266.1"
                     /translation="MSDQAIIRAPTEASAAAVTPVEAGAFGSFVSGVALTIGTRLLML
                     VGVVGSSVIVARWLGPEGLGSLAVLNTTIVLALSIGSLGLTSANTYFIAKDRKTLAPV
                     WANAIVFALFGGAVVAVAVVALAKINPALLGGVSVDLIAIAALSIPFQFLLSLGLNVL
                     LAMDRIRQLNLLDAMAPAFALFNAIVVLVILRSNLKVLVSFNTAATVVLSGCMLWVIA
                     RLVTRQKERAAFRPDGRLFKGAISYGLRFCIPLMAAILIFRVDLLIVNHFRGAAEAGV
                     YAVASQVANLLTMLPGVIAILLFPRVASYQDPRGEFAIQVTRHVSFVMLIMCAAAAAG
                     SLLLPLIYGARFADATIQLLILLPGVCLIGIESVLVQHFTGTGLPVTIPVFWLITLAV
                     NLVLNFALVPVFGARGAAVTSTISYALIFVFVAVYFCMKTGRRPGEIFLLRNRELRNL
                     LVQARLASPTRAHE"
     gene            3755..>5058
                     /locus_tag="VHD88_00390"
     CDS             3755..>5058
                     /locus_tag="VHD88_00390"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HVS20267.1"
                     /translation="MKIVLLVLSGDPDQAREWLQKSYPDVGIERISRDQLESYTPLRR
                     VGVLRSFRPDIFAVATERLAWQSGQNALLLFGSLAGARRVVLFDASGNNREETRAAIL
                     GRAPFRFAAESVASALAIARSHSDLKKLERAVKSRANSFPSKPARKNSEALRIAYLRS
                     TPGAGTQAGGAATHINGFVNAATELGAGIRMISNDYIAGIDKTNLTLIDPEPLGTTRA
                     AFDLRNNLIFSAGALREIEHSPVDLIYQRYARFSWAGVVASLRTGVPLFLEYNGSEVW
                     IGKHWDMGGPRPLLKRFERLNLEAAERIFVVAEVERRNLLRAGIADEKIVVNPNGVDT
                     EKFRPDVGGAAVRRELGVAADETFAGFVGTFGPWHGVLTLAEAITLLPADSGVRFLLI
                     GAGRLREEVERIVRAAGKERQVIFSGHVEHERVPALLDACDML"
BASE COUNT          970 a         1361 c         1572 g         1155 t
ORIGIN      
        1 cggcgcgcgc ctgctgatcg tcgcgagcgg cctaggcgtc caggctggac tggaagaacg
       61 cttttcatct cgagattacg gagccaaaga gccgtcagcg tcggtttgct gggccgttca
      121 cgcttcgacg ccttttacag cgcaattcgc cctggtttcc gttggtccaa atgaagacga
      181 gagcgaacgc ctgggattga gccgtccgac aaattttggg aatgctgatc aagttggttg
      241 aagcgtgctt ggtttcttcc cctccctgtg ggaggggtta ggggagggtg cgaagcttga
      301 cgcgtgcaag ccctctcccc ggccctctcc caaagggaga gggagtaaga tcaacgacaa
      361 actgaagttt gtcggacagc caattgccaa tcggaaataa ataatgtgcg gcatctgcgg
      421 agtctgggag tacggagcgg ctgaaggccg cgtcgagcgc gcgctggtcg agcggatgcg
      481 cgacgttatg acgcatcgtg ggccggacga cgcgggggaa ttgatctttg acgaagcacg
      541 cggcgggttc ggctttcgcc gtttgtcgat catcgatttg tcggaagcgg gccatcagcc
      601 tatgcatggc tgcactgatc gcgtctggct ggttttcaat ggcgagattt acaaccacgc
      661 tgagttgcgc aaagggctgg agcagcgcgg acacgtgtac gcttcgcgca ccgactcgga
      721 aacgatcctg catctttatg aagagcgcgg gctcgacttt gttcaggaga tcgaaggcga
      781 ttacgcgatt gcgttgtggg acgccgatcg tgaacgactc gtgttggcgc gcgatcgtgc
      841 cggggtcaaa ccgctctact tccatcaaca gaatggacgc ttcatctttg gttccgaaat
      901 caaggcgatt ctcgaacatc cggccgtgac ggcggaagtg aacgaagaag cgctctatca
      961 ctatctcact ttcgtaacta cgccggcgcc gcaaactctc tttcgcggag ttcaaaaact
     1021 tcccgccggc cacttgctgg tcatcaatcg caccggcgaa gcgcgcatca cacaatactg
     1081 ggatgccctg cctcccgcct cgcccgtcgt acgcagtgaa gaagaacacc agaaaagtat
     1141 tctagagctg ctgcgggctt cgattaagaa acgcatgatg gccgacgtgc cgttcggcgt
     1201 atttctttcc ggcggagtcg attcgtcggc gaatgtggcg ctgatgtctg aactgatgac
     1261 ccagccggtg cgaactttca ccgtcggctt tcatgatacg gaagaactta acgagttgga
     1321 gtcggcgcgc gagatctcaa aacggttcgg aacggaccat catgaggtaa tgatcggccg
     1381 cgcagagatg atgaagtttc ttcccgagct cgtctttcac caggacgagc ctatcgccga
     1441 tccggtttgc gtgccgcttt actatgtttc gaaactggcg cgcgatacgg gcacgatcgt
     1501 ggtgcaggtc ggcgaaggtt cggatgaaat ctttggcggc tatgattggt tcagaactta
     1561 tttgaatata gaaaagaggt tctggcgtca tgctgagcgg gcgccgctcg cagtccgcca
     1621 tgcggccgcg gtgatagcaa aaccgctggt caggaaggtc atgaagaaac gaatggccag
     1681 cgaattggtc cggcggctgg gagccaacga atcattgttt tggggtggtg cggtggtgtt
     1741 tgacgaaacg atgaagccga gtgtgctctc gccggaaatg cgcgcgagat acaacggact
     1801 atccacgtac aacgtcgtgc gccagtatca ggaaacgatc gccgccgcgc gtcccgattc
     1861 ggattacgcc gcgcgcatga cctatctgga attgaaactt cgcctgcctg agctgttact
     1921 gatgcgcgtg gacaagatca ccatggccac gtcggtcgaa gcgcgcgttc cgtttctcga
     1981 tcatcatctg atcgaatatg cgatgggcct gccgcgaaat ctgaaagtga agggcgcgac
     2041 cggaaaacat attttgaagc gggccctgga atcggtatta ccggcggacg ttctgtacaa
     2101 acccaagcgc ggattcggcg cgccggtgcg cgaatggttt cgcggccctg aaggcgagag
     2161 tttggttcag caactaatga actcgtcaat ccgtgagcgg aacttttttg actattcgtt
     2221 tatccagcgc atggccgacg aacacgcccg ggagacgcgc gattggagcg cgaatctgtg
     2281 gtgtttgctc aatctgagtc tgtggtacga ccattggatc gcgcccgcaa actaacgaat
     2341 ccgaatccca gcatgagcga tcaagcaatc atcagggccc cgacggaagc tagtgccgcg
     2401 gcagttacgc cggttgaagc gggagccttc ggtagttttg tgtcgggagt ggcgctgacg
     2461 atcgggacgc gattgttgat gctggtgggc gtcgtcggtt ccagcgttat cgtcgcgcgc
     2521 tggctgggcc cggagggcct cggttcattg gcggtgctga acaccacgat tgtgctcgcg
     2581 ttgtcgatcg gcagcctcgg ccttacgtca gctaatactt acttcatcgc taaagaccgc
     2641 aaaacgctcg cgccggtgtg ggcaaacgcg attgtctttg ctctattcgg cggggcagtg
     2701 gtcgccgtgg cggtggtggc actcgcgaag atcaatccag cgctccttgg cggcgtttcc
     2761 gttgacctaa tcgcgatcgc agcactctcg attccatttc agtttctgct atcacttggt
     2821 ctcaacgtgc tgctggcgat ggatcgaatc cgccagctta atctgctgga tgcgatggcg
     2881 cccgcttttg ctttgttcaa tgcgattgtg gtgctcgtga tattgcgttc caaccttaag
     2941 gtgctcgtct ctttcaatac tgcggcgacg gtcgtgctga gcgggtgcat gctttgggtg
     3001 attgcccggc tggtgactcg gcagaaggag agggccgcgt ttcgcccgga cggccggcta
     3061 ttcaaaggcg cgattagtta cggccttagg ttttgcattc cgttgatggc agcgatactg
     3121 atctttcgcg tcgatctcct gattgtgaat cactttcgcg gggcagccga ggccggcgtg
     3181 tacgcagtcg cgtcgcaggt cgcaaatttg ttgaccatgc tgcccggcgt gattgccata
     3241 ctgctgttcc cacgcgtggc ttcctatcag gatccgcgcg gtgagttcgc aatccaggtt
     3301 acccgacatg tatcgttcgt aatgctgatt atgtgcgccg cagccgctgc cggctctctc
     3361 ctgctgccgc tcatttacgg cgcgcgcttc gcggacgcca ccatccaatt actgattctg
     3421 ttgcccggcg tttgtctcat cggcattgag tcagttttgg tgcagcattt caccggaaca
     3481 ggactgccgg taacgattcc ggttttctgg ctcatcaccc tggccgtgaa tctggtcctg
     3541 aatttcgcgc tggtccccgt ctttggcgcg cgcggcgccg cggtcacttc gacgatcagt
     3601 tacgcattaa tttttgtgtt cgtggcggtg tacttttgca tgaaaaccgg ccgccgtccg
     3661 ggcgagatat ttctcttgcg aaatcgcgag ttgaggaact tgctggtgca ggcccgtctc
     3721 gcgtctccaa ccagagccca cgagtgaatc ctgcatgaag atagttttgc ttgtgcttag
     3781 tggtgatccg gatcaggccc gcgaatggtt gcagaagagc tatcccgacg tcggcatcga
     3841 gaggatctcc cgcgaccaac ttgaaagcta cacgccgctt cgtcgcgtcg gcgtgctgcg
     3901 ttcgtttcgt ccggatattt ttgcggtcgc caccgaacga ctcgcctggc aaagcgggca
     3961 gaatgctctg ctactttttg gatctctcgc gggtgcgcgt cgtgtcgttc tatttgacgc
     4021 gagcggcaac aacagagaag agacacgtgc agcgatcctg gggcgggcgc cgtttcgctt
     4081 tgccgctgag tctgtcgcca gcgcgctcgc aattgctcgt tcgcattccg atcttaaaaa
     4141 actcgagcgg gccgttaaga gtcgagcgaa ctcttttcct tcaaagccgg ccagaaaaaa
     4201 ttccgaggcg ctgcggatag cttacctgcg cagcacaccg ggcgcgggca cgcaggccgg
     4261 tggcgcggcg acacacatca atggcttcgt caacgcggcc actgagctgg gtgcagggat
     4321 caggatgatc agcaacgact acatcgccgg aatcgacaag acaaacttga cgctgatcga
     4381 tccggagccg ttgggaacga cgcgcgcggc cttcgacctg cgcaacaatc taattttttc
     4441 cgcgggagcg ctgcgagaga tcgagcactc gccggttgat ttgatttacc agcgctatgc
     4501 tcgttttagc tgggccggag ttgtagccag cttgcgcact ggcgtgccgt tgttcctcga
     4561 atacaacggg tctgaagtct ggatcggaaa gcactgggac atgggcggcc cgcggccgct
     4621 gttaaaacga ttcgagcgtt tgaacttgga ggcggcggaa cggatcttcg tcgtagcgga
     4681 ggtggaacgg cgcaacctct tgcgcgccgg aatcgctgat gaaaagatcg tcgtcaatcc
     4741 caacggagtt gacacggaaa agtttcggcc tgacgttggg ggcgccgcgg tgcgacgtga
     4801 gctaggagtg gcggcggatg agacgtttgc tggtttcgtc ggcaccttcg gcccctggca
     4861 tggcgtgctg acgctggccg aggcgatcac gctgctgccg gcggattccg gggtgcgctt
     4921 cctgctgatc ggcgcgggca gattgcgcga ggaagtcgag cggattgttc gggcggcggg
     4981 aaaagagcgt caggtgattt tcagtggcca tgtcgagcat gaacgcgttc cggctttgct
     5041 ggatgcctgc gatatgct
//
LOCUS       DASZZE010000025         2721 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_196593, whole genome shotgun sequence.
ACCESSION   DASZZE010000025 DASZZE010000000
VERSION     DASZZE010000025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2721)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2721)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2721
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_196593"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..830)
                     /locus_tag="VHD88_00395"
     CDS             complement(<1..830)
                     /locus_tag="VHD88_00395"
                     /inference="COORDINATES: protein motif:HMM:NF020874.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1972 domain-containing protein"
                     /protein_id="HVS20268.1"
                     /translation="MRIAILGTRGIPANYGGFETFAEHLSTRLVARGHDVTVYCRSHY
                     TSPRQIEYQGVRLKVLPTIRHKYFDTVVHAFLSALHAMASRYDAALICNAANAPFASI
                     LRLAGTPVALNVDGLEHKRKKWNWIARGYYRLAERLATILPTETVTDARVIQEYYQAR
                     YRAHSTMIAYGAEVERRPDPTVRRWRVEPNRYVLYVSRLEPENNAHLVIEAFKRVRTA
                     HKLLIVGDAPYARDYIKDLKARARRDKRNVFTGFVFGRDYRALQQNAYCYIHGTEVGG
                     T"
     gene            complement(931..2064)
                     /locus_tag="VHD88_00400"
     CDS             complement(931..2064)
                     /locus_tag="VHD88_00400"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HVS20269.1"
                     /translation="MHIAIDAHSVGAKLGGNESYAVNLIEALAEIDQTNLYTLYVTKQ
                     VAIDRFANRWANFKVRQTLPHTPLVRIPLTLSAELRRHPVDVLHVQFTAPPFSPCPIV
                     TTIHDLSFEHLPETFKRRSRAQLRLTVRRTTRKAALILTLSEFSRRDIIETYAVEPER
                     VLVTPAAAPPHFKPVVDETELKKTRETYGIDANYLLSLGSIQPRKNLTRLIEAFLWLR
                     TARPASRLPQLVIAGKRGWLDREVFRAAQQAGLKESVKFIGYVPEEDLPALYSGAMCF
                     VYPSYFEGFGLPVLEAMQCGAPVIAGNQTSLPEVAGDAALLFDPFDTRALGDAIARVI
                     DNPDYRAELRVKGLKRAAEFNWIATARLTLKAYERAAASRSAQ"
     gene            complement(2145..2555)
                     /gene="rplS"
                     /locus_tag="VHD88_00405"
     CDS             complement(2145..2555)
                     /gene="rplS"
                     /locus_tag="VHD88_00405"
                     /inference="COORDINATES: protein motif:HMM:TIGR01024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HVS20270.1"
                     /translation="MNRLDSVEKTQLRNNIPAFQPGDTVRVHVRIKESETKERLQAFE
                     GVCIARKHGGGRESITVRKTSFGVGVERIFPLHATIIDHIDLVKKGHVRRAKLYYLRG
                     LRGKAARIRERDTRQTEVAGAAAAGGGESAAGEE"
BASE COUNT          548 a          771 c          812 g          590 t
ORIGIN      
        1 gtgccgccaa cttcggtccc gtgaatgtag cagtaggcgt tctgttgcag agcgcgataa
       61 tcgcgaccaa aaacaaagcc tgtgaaaacg ttgcgcttgt cgcggcgggc gcgtgccttg
      121 aggtctttga tgtagtcgcg cgcgtacgga gcgtcgccga caatcaagag tttgtgcgcg
      181 gtcctgacgc gcttgaacgc ttcgatcacc agatgcgcgt tgttctcggg ttccagacga
      241 gaaacgtaaa gcacatagcg gttcggctcg acacgccagc gccgcaccgt tgggtcggga
      301 cgccgctcga cctccgcgcc gtaagcgatc atcgtggagt gcgctcggta gcgagcctga
      361 tagtattcct gaatcacgcg cgcatccgtc acggtttcgg tgggtagaat cgtcgccagt
      421 ctctcagcca ggcgataata accgcgcgcg atccagttcc acttcttgcg cttgtgctcg
      481 agcccatcaa cgttgagcgc gaccggcgtg ccggccagtc gcaggatcga agcgaacggc
      541 gcgttcgccg cattgcaaat cagcgcggcg tcataccggg acgccatcgc gtgcaacgcc
      601 gacagaaagg catgcacgac ggtgtcgaag tatttgtgac gaatggtggg caggaccttc
      661 aggcgcacgc cctggtattc aatctggcga gggctggtgt aatgcgaccg gcaataaacc
      721 gtcacatcgt gcccgcgcgc gaccagccga gttgagagat gttcggcgaa ggtttcgaag
      781 ccgccatagt tggcgggaat gcccctggtt ccgagaattg cgatccgcat ggctagaaat
      841 aaagaatgcc ggatgaagaa tgaaagagca agtcctcttt ttgggtttcg ccgtgtgttc
      901 gaatgtccaa gccgtgttta ttggttttcg tcattgagcg cttcgacttg ctgccgcgcg
      961 ttcgtaagct ttcaacgtca aacgcgccgt cgcgatccaa ttgaactcgg cggcgcgttt
     1021 gagtcctttg acgcgcagct ctgcgcgata gtcgggattg tcgatcactc gagcgattgc
     1081 gtcaccgagt gcccgagtgt cgaacggatc aaacaataag gccgcgtcgc cggcaacttc
     1141 cggaagactg gtttgatttc ccgcgatcac gggcgcgccg cattgcatgg cctcgagcac
     1201 gggcaaacca aagccttcaa agtaagacgg gtaaacgaaa cacatcgcgc cgctgtaaag
     1261 tgccggcaga tcctcttccg gaacgtaacc tatgaacttt acgctttctt tcagaccggc
     1321 ttgttgcgct gcgcgaaaaa cctctctgtc cagccagccc cgttttcctg cgatgacaag
     1381 ctgcggaagc cgactcgccg gacgcgccgt gcgcaaccag aggaacgctt cgatcagccg
     1441 cgtcaggttc tttcgcggct ggatggaccc aagcgacaga agataattcg cgtcgatgcc
     1501 gtaagtctcg cgagtctttt tcaattctgt ttcgtcgact acgggtttga aatgcggtgg
     1561 agctgccgcc ggcgtgacca gtactcgctc aggctcgact gcgtaggttt cgataatgtc
     1621 gcggcgcgag aactcagaca acgtgaggat caacgcggct ttgcgcgtgg tgcggcgcac
     1681 ggttagccga agctgagccc ggctgcgacg cttgaacgtt tcgggcagat gctcgaacga
     1741 cagatcgtga atcgtagtaa ctatcggaca aggcgaaaac ggtggcgcgg tgaattgaac
     1801 gtgcagcaca tcgacaggat gccggcgcaa ttccgctgaa agcgtcagcg gaatccgcac
     1861 gagcggcgtg tgcgggagcg tctgccttac tttgaaattg gcccagcggt tggcgaaccg
     1921 atcgatggcc acctgtttgg tgacgtagag tgtgtaaaga ttggtttgat cgatctcagc
     1981 tagagcttcg atcaggttga ccgcgtaact ctcgtttccg cccagtttgg ctccgacgga
     2041 atgcgcgtcg attgcgatgt gcaagatcgc tccaatttag tgagagcgtt ggccggcaag
     2101 tcgctcagcg agggacaact gtggaagccg acgaggctaa agtcttattc ttcaccggcc
     2161 gccgattctc cgccaccggc agccgcggcc ccggccactt cggtctgtcg tgtatcccgc
     2221 tcgcgaatgc gcgccgcttt accgcgcagt ccacgcaaat agtaaagctt cgcgcggcgc
     2281 acgtgccctt tttttaccag gtcgatatga tcgatgatcg tcgcgtgcaa gggaaagatt
     2341 ctttccacgc cgacgccaaa gctggtcttg cgcaccgtga tcgactcgcg ccctccgccg
     2401 tgtttgcggg cgatgcagac gccttcgaaa gcctgcaagc gctctttggt ttcggattcc
     2461 ttgatgcgga cgtgaacgcg tacggtatcg cccggctgaa atgccggaat gttattgcgt
     2521 agttgcgtct tctcgacgct gtctaagcgg ttcatgatca actccatcac ttcagaagat
     2581 ctggtcgatt gcgcttcgtc ttattcaagc tggcttcgcg gcgccaacgc gcgatctcgg
     2641 catggttgcc ggtcaacaaa acttccggcg cgtgcatacc ttcaaactcc ggcggacgcg
     2701 tgtactgcgg acaatcaagc c
//
LOCUS       DASZZE010000026         5041 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_980, whole genome shotgun sequence.
ACCESSION   DASZZE010000026 DASZZE010000000
VERSION     DASZZE010000026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5041)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5041)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5041
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_980"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2918
                     /locus_tag="VHD88_00410"
     CDS             <1..2918
                     /locus_tag="VHD88_00410"
                     /inference="COORDINATES: protein motif:HMM:NF024754.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HVS20271.1"
                     /translation="RLSVLDFDDLQLRALKLLNEHPEVMTRVAERYRFFLVDEFQDTN
                     SLQRDLMRKLALVRGANLFIVGDRKQSIYGFRGADVDVFREMTEAIETAGGVPRPLHR
                     NFRSQKPLVDSFNFLFERVFKTRSESSPDELAQLGFVGHEPSSAERGTEHQPPLIDLL
                     VSVLPNSRGKPAAESEGDEEDEPEQSGARESDAAQLVERIESLIGQGFEYRHLAILFR
                     ALTGVWPYESALRRAGIPYLTVQGKGFYQREEITDLIQLLRLLDNTTDELALAAVLRS
                     PLCGISDNALFALRCAPRLDDVSEQERLHRRNLLRALRRHRDIQFIDDEERVALDRAA
                     DFLDSMIERRNRYSISALLRGAVAQTEFMTVIAANFDGAQRIANVEKLFRLAEQFESS
                     GHLIRDFVRYVEKFEAVGGRESEGQMDESANVVRLMTIHQAKGLEFKVVIIPDVHREL
                     KPRETWHLLDRHKGFTVRVPDGRGQTVRGALFNELRKRARWREEFESMRLLYVAATRA
                     EDRLIFSGAVERKDLKNLSTTSREQWLAWLWQALELDEQASSGVRGFDNDVQFQITID
                     REGRFLASSRSSARVDDAGEKKIDPSRPFEELFPLLRPIVPEFGKALRRFNVTQLINF
                     QRCARQYYFDRLLRAPSSEDLAVWNDAEAPEPPANLTATLKGAVIHRFCETFSEGDAA
                     EDRLRASFEDVIRQRQAELAGRVFEIDTEQAVHDLMPLAQNYLASDVFRRVQAAQTVR
                     SSNNPQSAIRNPQSPRAAGFWSELRFRLRRSSGILTGTIDKLLITPANGGGVDVEIID
                     FKTNRFRVQTSRPEKRSRTAVVASTSIGAPGVIESGSQPAQGFFDFESRKADATPRRP
                     VVSLEEQIDAAARDYQLQMQSYALALRELLPAETKLNSLRATLHFIDPNVEVSVSSTL
                     LEPETCGRAIDDAIFRIASLDGTLDAEAFPPLPATHCRICKFVDLCAPGRDWLSQHR"
     gene            3040..4266
                     /locus_tag="VHD88_00415"
     CDS             3040..4266
                     /locus_tag="VHD88_00415"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HVS20272.1"
                     /translation="MITVKSFDGGEFDAYIALPAGGFGPGIVVLQEIFGVNEYMRQVA
                     DWYAARGFVALVPDLFWRQEPGIQLTDQTEAEWQKAFALYQGLDEAKAVEDSAAAVEF
                     LRQLPACSSRVGAVGFCLGGNLAYLLSVRFKPDCAVGYYGVSIEKTLNEANNLGAPLM
                     LHIAGCDQYCPPQAQKQIHEALDSNPLVTIHDYSEQDHAFGRPGGEHYDAAAAELANL
                     RTLEFFVRNLTGEGLASAQKSLSDRWDEHVKYEFATRDTEDTLKTMVPNAYVNHVPVL
                     TGGVGYDQLREFYSQRFIPQMPPDTSMTPVSRTIGVDRVVDEMVFEFTHSIKMDWMLP
                     GVAPTGKHVKIPLVVIVHFRDGKLAHEHIYWDQASVLAQLGLIDATKLPVAGVETAEK
                     VLDPSLPANKLMERAD"
     gene            4263..>5041
                     /locus_tag="VHD88_00420"
     CDS             4263..>5041
                     /locus_tag="VHD88_00420"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HVS20273.1"
                     /translation="MKNNTDTPIVSRLRRDLGTIESYAALIGILIGAGIFKVTSDAWS
                     LTGPSVVLGYAVLMPAILATSIPYAAFISTPLGREPGGEYLHISRTLGGFGIAYIGSW
                     LKIIAYIGAGAYLASALADYIIELTGRRFSGEFVHQTLAVGSLLFFYVVHVVGVRWFG
                     RIQVAMCVLLGLSICVLVIPGLFAIHRANYSPFITHGPRGFALSLAPIFFSYAGFESL
                     AQTAGETKDSTRRLPMVFLKGISAASLIFILMSAVAFGVLPG"
BASE COUNT         1039 a         1406 c         1462 g         1134 t
ORIGIN      
        1 aacgtctttc ggtgctcgac tttgacgatc tgcaacttcg cgcattaaaa cttctgaacg
       61 agcatcctga agtgatgacc cgggttgccg agcgctatcg attctttctc gtcgatgagt
      121 ttcaggacac gaatagctta cagcgcgacc tgatgagaaa gctggcgctg gtgcgcggcg
      181 caaatctttt catcgtcggc gatcgcaaac aatcgatcta tggctttcgc ggcgcggatg
      241 ttgacgtgtt ccgcgaaatg accgaggcga tcgaaactgc cggcggcgta ccgcgaccgc
      301 tgcatcgaaa ctttcgcagc caaaaacctc tggtcgattc tttcaacttt ctcttcgagc
      361 gagttttcaa gacgcgctcc gaaagctcgc ccgatgaact agcacagctc ggattcgtgg
      421 gccatgaacc cagctctgcc gaacgcggca ccgaacacca gccgccgctg atcgatttgc
      481 tcgtcagcgt tttgccgaac agtcgcggga agcccgcggc agaatcagaa ggcgacgaag
      541 aagacgaacc cgaacagtcg ggagcacgtg agagtgacgc ggcgcagttg gttgagcgca
      601 tcgaatcgct gatcgggcaa ggcttcgaat atcgccacct cgcgattctg tttcgcgctc
      661 tcacgggcgt gtggccatac gaaagcgcgc ttcgtcgcgc cggcattcct tacctcaccg
      721 ttcagggcaa aggtttctat caacgtgaag agatcaccga tctgatccaa ttgcttcgcc
      781 ttctcgataa caccacggat gaactggccc tggccgccgt cttgcgctcg ccgctctgcg
      841 gcatttcgga caatgcatta ttcgctttgc ggtgtgcgcc gcgacttgac gacgtgtccg
      901 agcaagaacg attgcaccgt cgcaaccttt tgcgcgcgct gcgccgtcat cgtgacattc
      961 agtttatcga cgatgaagag cgcgttgcgc ttgatcgcgc agccgacttt ctggattcaa
     1021 tgattgagcg gcggaatcgt tacagtatct ctgcgctgct gcggggcgca gtcgcgcaga
     1081 cggagttcat gaccgtcatc gccgcgaact ttgacggcgc gcagcgaatt gcgaacgttg
     1141 aaaagctgtt ccgactggct gagcagtttg aaagttcagg tcatttgatt cgcgatttcg
     1201 tgcgttatgt agaaaagttt gaagccgtcg gcgggcgcga aagcgaaggc cagatggatg
     1261 aatccgcgaa cgtggtccgc ttgatgacaa ttcatcaggc gaaaggtctg gagtttaagg
     1321 tcgtcatcat tcctgatgtg catcgtgaac tgaaaccgcg cgagacctgg catctgctcg
     1381 atcggcacaa gggctttacc gttcgcgtgc ccgatggtcg cggccagact gtgcgcggcg
     1441 cgctcttcaa cgaattgcga aagcgagcgc gttggcgcga ggagttcgaa agcatgcgcc
     1501 tgctttacgt cgccgcgacg cgcgccgagg atcgcttgat tttttccggc gctgtcgagc
     1561 gaaaggattt gaagaacttg agcacgacgt cgcgcgagca gtggctggcg tggctgtggc
     1621 aagcgctcga actggacgaa caggccagca gcggcgtgcg cggattcgac aacgacgtcc
     1681 aatttcaaat cacgatcgat cgcgaagggc gctttctcgc gtcatcaaga tcatctgcgc
     1741 gcgtcgatga cgcgggcgaa aagaaaatcg atccctctcg tccatttgaa gaattgtttc
     1801 cgttgctgcg cccgattgtg cctgaattcg gaaaggcact gcgtcggttc aacgtcacgc
     1861 aactgattaa ttttcaacgc tgtgcgcggc agtactattt cgatcgcctg ctgcgcgcgc
     1921 catcgagcga agatctcgct gtctggaacg atgctgaagc gcccgagccg cccgcgaatc
     1981 tcaccgcgac tctgaaaggc gcggtgatcc atcgcttctg cgaaacattt tccgagggcg
     2041 acgccgcgga agatcgtttg cgcgcgagct ttgaggatgt aattcgtcaa aggcaggctg
     2101 aacttgcggg cagagtcttc gagattgata ccgagcaagc cgtgcacgat ctgatgccgc
     2161 tggcgcagaa ctatctcgcc agcgacgtat tcagacgagt gcaagcggcg caaacagtta
     2221 ggagttctaa caatccgcaa tccgcaatcc gaaatccgca atcgccacgc gcggccggtt
     2281 tttggagcga attgcgcttt cgtttgcggc gctcttccgg aattctgacc ggcacgatcg
     2341 acaagctgct gattaccccg gcgaatggcg gcggtgtcga tgtcgagatc atcgacttca
     2401 aaactaatcg ttttcgagtg caaacaagca gaccggaaaa gcgatcgcga acggcggtcg
     2461 tcgcctcaac atcaatcggc gcacccggcg tgattgaatc cggatcgcaa cccgcgcagg
     2521 gcttttttga tttcgaatcg cgcaaagctg atgctacgcc acgtcggccc gtggtttctt
     2581 tggaagaaca gattgacgcg gccgcgcgtg attatcagtt acagatgcaa tcctacgcgc
     2641 tggcattgcg ggaactcttg cccgccgaga cgaagctcaa cagtctgcgc gccacgcttc
     2701 atttcatcga tcccaatgtc gaagtcagcg tgtcatcaac tttacttgag ccggaaacct
     2761 gcgggcgcgc gattgacgac gcgatctttc ggattgcttc tctagacggc acgctcgacg
     2821 ccgaagcttt cccaccattg cccgcgacgc actgtcggat ttgcaagttt gttgatttgt
     2881 gtgcgcccgg ccgagactgg ctcagtcaac accgatagca tacgctcgtt tcggagtacc
     2941 gaccttagtc gggctttcga cgcatggaaa aacccgacta aagtcggtac tctaaacgcc
     3001 gccctaccat cgctcgaata tgaggggaac tagtccgaca tgattactgt gaaatctttt
     3061 gacggcggag agtttgacgc gtacatcgcg ttgccagccg gcggcttcgg cccgggcatc
     3121 gtcgtcttgc aggaaatttt cggcgtcaat gaatacatgc gccaagttgc cgactggtac
     3181 gcggcgcgcg gtttcgtcgc gctggttcct gatctcttct ggcgacagga gccaggcatt
     3241 cagttaactg atcagacgga agccgaatgg cagaaagcat tcgcgcttta tcagggcctc
     3301 gatgaagcga aggcagttga ggactcagca gccgcggttg agtttctacg ccaacttccg
     3361 gcgtgcagca gtcgagtcgg cgcagttggt ttttgtcttg gtggaaatct tgcgtatttg
     3421 ctgtccgtga gattcaaacc cgactgcgcc gtcggttatt acggcgtcag tatcgagaag
     3481 accctgaatg aagcaaacaa tcttggcgct ccattgatgc tgcacatcgc aggatgtgat
     3541 cagtactgtc cgcctcaagc acagaagcag attcacgaag ctctcgattc gaatcctctc
     3601 gtcacgattc atgactattc ggagcaggat cacgcgttcg gtcgtcccgg cggcgaacac
     3661 tacgatgccg ccgcagccga actcgcgaat ctgcgcacac tggaattctt tgtccgcaat
     3721 ctgacgggtg aaggtttagc gagtgcgcaa aagtcgctgt cggatcgttg ggatgaacac
     3781 gtcaagtatg aattcgccac gcgcgacacg gaagacactt tgaagactat ggtgcccaat
     3841 gcctacgtga atcacgtgcc ggtgctgacg ggaggtgtgg gttacgatca gcttcgcgaa
     3901 ttctattcgc agcgcttcat tccacagatg ccgcccgata cctcgatgac gccagtgtcg
     3961 cgcacgatcg gcgtcgatcg cgtggttgac gaaatggttt tcgaattcac tcactcgatc
     4021 aagatggact ggatgctgcc gggcgtggct ccgacgggca agcacgtaaa gattccgctg
     4081 gtcgtcatcg ttcactttcg cgatggcaaa ctcgcgcacg aacacatcta ctgggatcag
     4141 gcttccgtgc tggcgcagct tggtttgatc gacgcgacaa agcttccggt tgcgggtgtt
     4201 gagacggctg aaaaggtact cgatccgagc ttgccggcaa acaaactgat ggagcgcgcc
     4261 gattgaagaa caacacggac acaccgatcg tcagtcgtct ccgccgcgat ctcggcacga
     4321 tcgaatcgta tgccgcgctg attggaattc tgatcggcgc cggcatcttt aaagtcacca
     4381 gcgacgcctg gtcgctcacc ggtccgagcg tggttctcgg ttacgcggtg ctgatgcctg
     4441 cgattctcgc gacctcgatt ccgtatgcgg cgttcatctc aacgccgttg ggacgcgaac
     4501 cgggcggtga gtatctgcac atctcgcgta cgctcggagg gtttggtatt gcatacatcg
     4561 gctcgtggct gaagatcatc gcctacatcg gcgccggcgc gtacctggcc agcgcgttgg
     4621 cggattacat aatcgaactc accggccggc gtttcagtgg ggagttcgtt caccagacgc
     4681 tcgccgtggg cagcctgctt tttttctacg tcgtgcacgt tgtcggcgtg cgttggtttg
     4741 gtagaatcca ggtagccatg tgcgtgctgt taggcctttc gatttgcgtg ctggtgattc
     4801 ccggactgtt tgcgatccac agggcaaact actcgccgtt catcacgcac ggcccgaggg
     4861 gattcgccct gagcctggcg ccgattttct tttcttacgc cggctttgag tcgctggccc
     4921 aaactgccgg agaaaccaaa gacagcacgc ggcgtctgcc aatggttttt ttgaaaggaa
     4981 tcagcgcggc gtcgctgatc ttcatactga tgtccgcggt cgcgttcggc gtgctgccgg
     5041 g
//
LOCUS       DASZZE010000027         1850 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_131271, whole genome shotgun sequence.
ACCESSION   DASZZE010000027 DASZZE010000000
VERSION     DASZZE010000027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1850)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1850)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1850
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_131271"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..262)
                     /locus_tag="VHD88_00425"
     CDS             complement(<1..262)
                     /locus_tag="VHD88_00425"
                     /inference="COORDINATES: protein motif:HMM:NF012521.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HVS20274.1"
                     /translation="MKTLVLLRHAKSSWKDGSVKDFDRPLNQRGLKTAPLVGRLMRKR
                     KLKPDLVLSSPAERARQTARLVIEAARLNVELRHDERIYEAGA"
     gene            409..1098
                     /locus_tag="VHD88_00430"
     CDS             409..1098
                     /locus_tag="VHD88_00430"
                     /inference="COORDINATES: protein motif:HMM:NF014299.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20275.1"
                     /translation="MISYGYHRYPGRLFVVEGTDGSGKSTQLALLYQWLKAEGYPVFF
                     SEWNSSPLVKDTTRRAKKRRLFTPTTFSLLHATDFADRTERNIVPPLKAGAIVLADRY
                     IYTAFARDVARGCDRAWVREVYKFAVKPTVSFFFRAPLDVAIDRIASARPSLKYYEAG
                     MDMDWADDEEESFKIFQGKILDEYDHMVNEFGLTQIDATQSIRTQQRQMREIVSRHLK
                     EKLKEKVVLTG"
     gene            1095..>1850
                     /locus_tag="VHD88_00435"
     CDS             1095..>1850
                     /locus_tag="VHD88_00435"
                     /inference="COORDINATES: protein motif:HMM:NF014299.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20276.1"
                     /translation="MKELRFYGTALPGFEVEPYSGKLIVIEGTDGVGRSTHVALLRTW
                     LESSGHAVLDTGMTRSVLAGRGIKDARAGHTLGSLTMQLYYATDFADRLEKEMLPALR
                     AGFVVLTDRYIYSAIARAVVRGADPDWIRAIYGIAVVPDAVFYLRLRSTEELAARVLA
                     SGHGFDYWESGMDLRVGDDYYDSFVAYQKLLLREFDRMSGEYGFQIIDAARPVRRVAA
                     ELRRAVKRVIGDEPAAEENASPPTEQSVPSDAKK"
BASE COUNT          370 a          539 c          540 g          401 t
ORIGIN      
        1 ccgcgccggc ttcgtagatt cgttcgtcgt gtcttagttc gacgttcaga cgagcagctt
       61 cgatcacgag gcgcgccgtc tgccgcgctc tctctgctgg agaactgagg accagatcgg
      121 gtttgagctt tcgtttccgc atcaatcgtc cgaccagcgg cgcagttttc aacccgcgct
      181 ggttcagagg ccgatcgaaa tccttgacgc taccgtcttt ccaacttgat ttcgcgtgtc
      241 gcaacagcac cagtgtcttc atcgagttct ctcactccga tcgagtggcg ccaactttaa
      301 ttcattggct gcctcagact caatgattaa ccgaaccgaa cggcgtcact agcctgaaat
      361 ttcacatcgc tgtaacattg attctggcac aattacccgg accagtagat gatctcgtac
      421 ggctatcacc gttaccccgg caggctgttt gtagtcgagg gcactgacgg cagcggcaag
      481 tcaacccaac tcgcgctgct ctatcagtgg ctcaaagccg aaggctatcc cgtcttcttt
      541 tccgaatgga actcttcgcc tctggtcaag gacacgacgc gacgcgcgaa gaagcgccgc
      601 ctgtttacgc ccacaacttt ctcgctgttg cacgcgaccg actttgccga tcgcactgaa
      661 cgcaacattg ttccgccgct gaaggccggc gcgatcgtgc tcgccgaccg ctacatctac
      721 acggcgtttg cgcgcgacgt ggcgcgcggt tgcgatcgcg cgtgggtgcg cgaggtttac
      781 aagtttgcag tcaagcccac agtaagtttc ttctttcgcg cgccgttgga cgtagcgatc
      841 gatcgcatcg cttccgcgcg acccagcttg aaatactacg aagccggcat ggacatggac
      901 tgggcggatg acgaagaaga gagtttcaaa atctttcagg gcaaaattct cgacgagtac
      961 gatcacatgg tgaacgagtt tggcctgact cagatcgacg cgacgcaatc gattcgcacg
     1021 cagcagcgcc agatgcgcga gattgtcagt cgccatctga aagaaaaact caaagagaaa
     1081 gtggtgctga ccggatgaaa gagctgaggt tctacggcac cgcactgccc ggtttcgaag
     1141 tcgagcctta cagcggcaag ctgatcgtga tcgaaggaac tgacggcgtc gggcgctcga
     1201 cgcacgttgc gctcttgcgc acgtggctgg agtcttcggg acacgcggtg ctcgacactg
     1261 gcatgacgcg ctctgtgctc gcgggacgcg gcatcaagga cgcccgcgcg ggacacacgt
     1321 tgggtagttt gacgatgcag ctttattacg ccactgactt tgctgatcgt ctggaaaagg
     1381 aaatgttgcc ggcgctgcgc gcgggtttcg tagttctgac tgaccgctac atctattcgg
     1441 cgattgcgcg cgccgtcgtg cgcggcgccg accccgactg gattcgcgcg atctatggaa
     1501 tcgcggttgt gcccgacgcg gtcttttatc tgcgcctgcg ctcgacggaa gagttggccg
     1561 cgcgagtgct cgcgtccggc catggttttg actactggga atcgggaatg gatctgcgcg
     1621 ttggcgatga ctactacgac agcttcgtcg cttatcagaa gttgctgctg cgcgaattcg
     1681 atcgcatgag cggcgagtac ggctttcaaa taatcgacgc tgcgcgcccg gtcaggcgcg
     1741 tcgctgcgga gcttcggaga gccgtgaagc gcgtgattgg cgacgagcct gccgccgaag
     1801 aaaacgcatc gccgcccacc gaacagtcgg taccttccga cgcgaagaaa
//
LOCUS       DASZZE010000028         3225 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_277945, whole genome shotgun sequence.
ACCESSION   DASZZE010000028 DASZZE010000000
VERSION     DASZZE010000028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3225)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3225)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3225
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277945"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..912
                     /locus_tag="VHD88_00440"
     CDS             <1..912
                     /locus_tag="VHD88_00440"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HVS20277.1"
                     /translation="HLDLSPDHVIVTAGSQESLYLILRTLVEEGDEVLMPNPGFIAYP
                     MITRMVGGRAVTYRLPAKDNFGFDLEDFKSRLSPRTKVVICISPSNPTGRALTRDDLR
                     GMADAVAASGSNAFIISDEIYRELYYTPERPASISEFYPRTIVVSGLSKSMRMTGWRI
                     GWLAGDEAVMRAALVLHGYVVTCASSVSQKAALAAWTDEAAVAREEMRAIFYRRRDHL
                     LGLLRNELGLRCVTPEGAFYTMVDVSRYGDSLRVAEAGLEQGVVTIPASAFGTESEGF
                     LRISFCADEAKLSEGVRRLGEALKSLG"
     gene            1054..2112
                     /gene="asd"
                     /locus_tag="VHD88_00445"
     CDS             1054..2112
                     /gene="asd"
                     /locus_tag="VHD88_00445"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: protein motif:HMM:NF006416.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HVS20278.1"
                     /translation="MNDKFRVGILGATGVVGQRFIQLLEDHPQFEVTALAASDRSQGK
                     SYAEACVWRLPGEMPARVKNIVVQAPAPPLDCDFVFSSLPGDVAKDAEKSFARAAFPV
                     ISNSSSHRMDADVPLLIPEVNHEHLALIDAQRAARGYDRGFIVTNPNCSAIVIVMALA
                     PLHAKFGITSCVVTTMQALSGAGYPGVASLDATDNVVPFIGGEEEKIEAETLKILGCV
                     SDGAINDADVKVSAQCNRVNVTDGHMASVRVKLSRPASLDNVRDALASFTSLPQELKL
                     HSAPARPIIVRDEVDRPQPRLDRDAGKGMSVTVGRIKADNVLDYRFVALGHNTIRGAA
                     GAAILNAELLVAKGYLGK"
     gene            complement(2240..2941)
                     /locus_tag="VHD88_00450"
     CDS             complement(2240..2941)
                     /locus_tag="VHD88_00450"
                     /inference="COORDINATES: protein motif:HMM:NF042734.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HVS20279.1"
                     /translation="MEIENWQIGNLLMYPAGNLFIPAPHGQLEAILKEPRGDSVRGVA
                     LVLHPLPLGGGTMHNKVVFRAAAALNDAGLIVLRINFRGVGQSTGEHDEGRGEKDDVR
                     AGLDYLAANYSNQEITLCGFSFGARVGLEVGIADERIARLISIGAPVDKYDFTFLEEC
                     RKPILFVHGEHDEYGNVERLRELVAKIALHVQLKVIEGAGHFFDDHLDELKAAITEWV
                     LEASAKLTIENSPAL"
     gene            3022..>3225
                     /locus_tag="VHD88_00455"
     CDS             3022..>3225
                     /locus_tag="VHD88_00455"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HVS20280.1"
                     /translation="MNDSADNNAKASPSPGDLDQITRVVVDTASEAIITIDEESTVLF
                     VNHAAEKIFGYSRAELIGQSLTML"
BASE COUNT          685 a          875 c          948 g          717 t
ORIGIN      
        1 catctggatc tgtctcccga tcacgtcatc gtcactgcgg gttcgcagga atcgctttac
       61 cttatcttga ggacgctggt cgaagaaggc gatgaagtgc taatgccgaa tcccggtttc
      121 atcgcctatc cgatgatcac gcgcatggtg ggcggacgcg cggttactta tcggctgccg
      181 gcaaaggata atttcggttt tgatctcgaa gatttcaaga gccgcctttc gccgcgaacc
      241 aaagtagtca tttgcatcag tccttcaaat ccaaccggac gcgcattgac gcgagacgac
      301 cttcgcggaa tggctgacgc ggtcgcggcg agcgggtcaa atgcctttat catcagcgac
      361 gagatctatc gcgagcttta ctacacccct gagcggccgg cttcgatctc ggaattttat
      421 ccgcgcacca tcgtcgtcag cgggctttcg aaatcgatgc gcatgaccgg ttggcgcatt
      481 ggttggttgg cgggagacga agctgtgatg cgcgcggcgc tggtgctgca cggatacgta
      541 gttacgtgcg cttccagcgt ctcgcagaaa gcggcgctgg cggcgtggac cgatgaagcg
      601 gccgtcgcgc gtgaagagat gcgcgcgata ttttatcggc ggcgcgatca tctgctgggc
      661 ttgttgcgta acgaacttgg cttgcgctgc gtgacgcccg agggcgcgtt ctacacgatg
      721 gtggacgtga gtcgttatgg cgattcgctg cgtgtggccg aagccggact cgagcagggc
      781 gtcgttacca ttcccgcatc ggcgtttggc accgagagcg aaggttttct gcgcatctct
      841 ttctgtgctg atgaagcgaa attgtcggaa ggcgtgcggc gtttagggga ggcgctgaaa
      901 tcgctggggt gaaggaaaag aattaaacgc agagggtgca gaggatttcg cagagggcgc
      961 aaaggttttc ctccgcgtgc ctccgcgaat gcctctgcga cctctgcgtt aaaattaagt
     1021 tgagcaaacg accagcggac aggattccat tcaatgaacg ataagtttcg tgttggcatt
     1081 ctcggtgcga ccggcgtggt cggtcagcgc ttcattcaac tgctggagga tcatccgcag
     1141 tttgaagtta ccgcgctggc ggcttccgat cgatcgcaag ggaagtccta cgcggaagcg
     1201 tgcgtttggc gtttgccggg cgagatgccg gcacgcgtga agaacatcgt tgtacaagct
     1261 cccgcgccgc cgctcgattg cgattttgtt ttttccagtt tgccgggcga tgtcgcaaag
     1321 gacgcagaaa agagtttcgc gcgcgccgcc tttccggtga tcagtaattc ttcctcgcat
     1381 cgcatggacg cagacgtgcc gctgctgatt cctgaagtta atcacgaaca ccttgcgctg
     1441 atcgatgcac agcgcgccgc ccgcggttac gatcgcggtt ttatcgtgac caatccaaac
     1501 tgttcggcga tcgtgatcgt gatggcgctg gcgccgctgc acgcgaagtt cgggataaca
     1561 tcgtgcgtgg tgacgacgat gcaggccctt tcgggagcgg gctatccggg tgtggcttcg
     1621 ctcgacgcaa ccgacaacgt cgtcccattt attggcggcg aagaagaaaa gattgaggcc
     1681 gaaactctga agattttggg ctgcgtcagc gatggcgcta tcaacgatgc cgatgtgaag
     1741 gtgagtgccc aatgcaatcg cgtgaacgta actgacggtc acatggcttc cgtgcgcgtg
     1801 aagctttcac ggccggcgtc actcgataac gttcgggacg cgctcgcttc gttcacatcg
     1861 ttgccgcagg agttgaagct gcactcggca ccggcgcgtc caatcatcgt gcgcgatgaa
     1921 gttgatcgtc cgcagccacg actcgatcgc gatgcgggaa aaggcatgag tgtgaccgtc
     1981 gggcgcatca aggccgacaa cgtgcttgat taccgctttg tggcgctggg gcacaacacg
     2041 attcgcggcg cggcgggcgc ggcgatactg aatgcggagt tgctggtggc gaagggatac
     2101 ctgggcaagt aagccaagta ctcttagtcc gcgaagcgga cggcagaaat agtcgttggt
     2161 tcagaaggcg cgaccggttc cgtattttct gtcgcccgtt tcacgggctt aggtttcaat
     2221 aatgtcgcca tacccagcac taaagtgctg ggctattctc aatcgtcagc ttcgcggacg
     2281 cttccaaaac ccattctgtg atcgccgcct tcaactcatc cagatgatcg tcaaaaaagt
     2341 gccccgcacc ttcgatgacc ttcaactgaa cgtgcagcgc gatctttgca actaactcgc
     2401 gcaaccgttc gacgttgccg tactcatcat gctcgccgtg aacgaagagg atcggcttgc
     2461 gacattcttc cagaaatgtg aaatcgtatt tatctactgg cgcgccgatg ctgatcagac
     2521 gagcgatgcg ctcatccgcg attcctactt ccaaaccgac gcgggcgccg aaggaaaaac
     2581 cacacagagt gatctcctgg ttcgaatagt tggcggccaa ataatccaag cccgcgcgca
     2641 cgtcatcttt ttcaccgcga ccttcgtcgt gttcgccagt gctctggccc acgccgcgaa
     2701 aattgattcg caacacgatg aggcctgcgt catttagcgc cgccgccgcg cgaaacacga
     2761 ccttgttgtg catcgtgccg ccgccgagcg gaagcggatg caacaccaac gcgacaccgc
     2821 gaacagaatc gccgcgcggc tctttaagaa tcgcttcaag ttggccgtgc ggcgcgggga
     2881 tgaaaagatt tcctgccgga tacatcagaa gattgccgat ttgccaattt tcgatttcca
     2941 attggcgctt gtcaaagaac gggatcatag aagagagcat tgactcgcga tccaaaatag
     3001 gattagtttc cgattagcgc aatgaacgat tctgcagaca acaatgccaa ggcatcgcca
     3061 tcgccgggcg atttagacca gattacgcgc gtcgtagtcg ataccgcctc agaggcaatc
     3121 attaccattg atgaagagag cacggtgctc ttcgtcaatc acgccgcaga gaaaattttc
     3181 ggttactcgc gcgctgaact aattggacaa tcattgacga tgctg
//
LOCUS       DASZZE010000029        11635 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_1089, whole genome shotgun sequence.
ACCESSION   DASZZE010000029 DASZZE010000000
VERSION     DASZZE010000029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 11635)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11635)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11635
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1089"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..351
                     /locus_tag="VHD88_00460"
     CDS             <1..351
                     /locus_tag="VHD88_00460"
                     /EC_number="4.2.2.n1"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016798 - hydrolase activity, acting on
                     glycosyl bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HVS20281.1"
                     /translation="FDPRQNIEGGARYLRFLLDHFDNDVDLALAGYNAGEGAVEKYGW
                     QVPPYSETQEYVRRISRRYALLRDPNAALYAPRVTTAQLARMQGKQSEPLTVYERTVL
                     TVRLPDGRLQLMSQ"
     gene            538..1104
                     /locus_tag="VHD88_00465"
     CDS             538..1104
                     /locus_tag="VHD88_00465"
                     /inference="COORDINATES: protein motif:HMM:NF015648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HVS20282.1"
                     /translation="MLDPDSRFCKGCGAPAGDAEETRIARPQSAVPAHYGDDDVESVV
                     FTVRPTMLFIKIGYAAAVLGAVLLTILLAMIRIVDNYWYFSLPVALGLLLIPAYYHLK
                     RNMVRYTLTDSKIEIDYGLIARTTRNIPLAKIQDVTVSASILQRILGFGDVVVDNASE
                     VGGTTILHNINNPRHYADLLLRELRHWH"
     gene            1204..2463
                     /locus_tag="VHD88_00470"
     CDS             1204..2463
                     /locus_tag="VHD88_00470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20283.1"
                     /translation="MRSSLLTRGILIISIAAYVCAAASATADAPPLNDVAKLLPNRLG
                     DFEAEGPTKPYAGLVFKTATFQDYSPSSAGQRTYKLTTASAPMNQFVAYVVKTNSESA
                     AYALLTAHVNLWLKLEAGEPASNRLTPPLAIHTNEIGTASAIGNTIAFGEVTFVKGST
                     YVAIGGPGYETSDIRPMESLAKLIASTIAKGEGEIPVLVKHLPDWEKADARALYAVSL
                     GSLKEVAGIQPIFDALSFDGGTEAVTANYGQSQLVIVEFTTPQFAGDNDRRIVAKIQE
                     LKSQGQPVPTAYRRVGNYSVLVFNAPDEKTANQLIDKVKYEQVVQWLGDDPHLYERVQ
                     NYLIRTTGGVVAAVVEGSVLSLLVCLGIGGLCGALLFRRRRAQQQAAYSDAGGAVRLN
                     LDELTGTSDQHRSLEPGKHVKPDSADS"
     gene            complement(2470..2640)
                     /locus_tag="VHD88_00475"
     CDS             complement(2470..2640)
                     /locus_tag="VHD88_00475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20284.1"
                     /translation="MADNGGGGGSVGVVAVLVIFVIVIVAAFLAYRAGMFGGRKTQVN
                     VNVTVPQGSPGR"
     gene            complement(2844..3917)
                     /locus_tag="VHD88_00480"
     CDS             complement(2844..3917)
                     /locus_tag="VHD88_00480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20285.1"
                     /translation="MNKKNFVVAVRSNSAIIKAAVTIMIALSFALACTSTTAFAKKKR
                     KVNYGTIEIATNPGGFPLRIDGKPEGDTSTTVRVIELDPGHHNVEILLPNGGRWVRDF
                     DIQQGRKLCVNLNYHPKKYTVAKPPPSPCPYPVNVSAPVSVNDGDLITFTSDNAYGGS
                     GTLNYTWTITPSDARIVSGAGTATITVDSTGLGSQRITATLAVDDGSGDAMCRQSAQA
                     STSIIPKKPPVVECKPFDQFQSVAFDDDKARFDNLAIELQNAPDSQAYVIIYAGRTSR
                     VGQADMLAKRTMDYLVNQRGVDAGRITIINGGYRDTDFFEIWICPPGAQRPQPTPTVQ
                     PGDVQPAKERTRPRKPRRRSGND"
     gene            complement(3920..4570)
                     /locus_tag="VHD88_00485"
     CDS             complement(3920..4570)
                     /locus_tag="VHD88_00485"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HVS20286.1"
                     /translation="MRTRFFRPMATMASLLLLVAVPAQASPIKFADIVNVMGDLQKGG
                     QIEQLRLRVAQDPSAPTSTGAASRTGVAPAVPSADGNALPASASLVSATESVAPSLVA
                     GTEVAPQKPQGDVQVFEQDNVDGTICDCGEIPSVGGGISKWWLLALVPLVCVTGICHH
                     HRVPPPEVSTPMPTPPVPEPASLLLLGSGLVALSAGARRRYAKTRASKQAAAMTEV"
     gene            complement(4858..6993)
                     /gene="pnp"
                     /locus_tag="VHD88_00490"
     CDS             complement(4858..6993)
                     /gene="pnp"
                     /locus_tag="VHD88_00490"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: protein motif:HMM:NF008805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004654 - polyribonucleotide
                     nucleotidyltransferase activity [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HVS20287.1"
                     /translation="MTVKKYLKESIRVGDRDLTVEVGRVAKQADGSCVIGYGDTMVLC
                     AAVGSQTPREGIDFFPLTIEYREANYAAGRIPGNYFRREGRPNEKEVLTCRLIDRPCR
                     PLFTKGYRNETQVITTVISADPDNNPDVVAITGASCALYLSDIPFSTPIAGVRIGLID
                     GRYIVNPTYDEVRESRLNLIVAGTEEAIVMVEAGAQEVSEEIMVEALMLAHKEINRLC
                     RWQKELYKALGIEKRAVEPPALNEEMVGEIQHNYAERLRAALDTSGQEKRASYAAVDA
                     LKKEVVESYPEDQPEQRAMAKKCFDHLKENIFRDDILNQRRRPDGRRFSEIRAITCEV
                     GWLPRAHGSALFTRGETQALVTTTLGTKEDEQFMDDLEKGEVKRRFLLHYNFPHFSVG
                     EVGRFGSSSRREIGHGALARRALEAVLPDDTTFPYTLRIVSDITESNGSSSMATVCGG
                     ALSMMDAGVPLKAPVAGVAMGLVMEGNKYAILTDIAGAEDHYGDMDFKVAGTRDGITA
                     LQMDIKITGVNAQIMAEALAQAKKGRLHILGAMEQALPAARAEISLHAPRIIKIKINP
                     DKIRDVIGPGGKVIRALVEETGAKIDVEDDGTVSIATADSAAAEAAVARIRGLTAEAE
                     IGQTYVGTVNRIVDFGAFVEIFPGTDGLLHISEIADRRIRDVRDELKEGQQIMVKCIG
                     KDGNKIKLSRKAILKDENQADAAGGHDGA"
     gene            complement(7341..7610)
                     /gene="rpsO"
                     /locus_tag="VHD88_00495"
     CDS             complement(7341..7610)
                     /gene="rpsO"
                     /locus_tag="VHD88_00495"
                     /inference="COORDINATES: protein motif:HMM:TIGR00952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HVS20288.1"
                     /translation="MALAREAKEKLVTDFRGHETDTGSAPVQIALLSQRINELTEHFK
                     THKKDNHSRRGLLKMVSQRRSLLDYLKRIDIQRYHDVVGRLGLRR"
     gene            7814..9049
                     /locus_tag="VHD88_00500"
     CDS             7814..9049
                     /locus_tag="VHD88_00500"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HVS20289.1"
                     /translation="MTQIKPRILIIGGGFGGLFSALDLSSAGDITLVSEEDHFLFTPM
                     LYEYLSGEVQAWHIGPDYKELLDENVLLIRGVVTGINLNRREVTIESRAEKLAYDVLV
                     LAVGGVTNYRGIEGAEQFTLPFRKLAHANALRRRMTEALDHVQPDAAPQDARRALTFA
                     VVGGGASGVELATKMADLLQDAFRRRALQGEPRVLVIEMTDRVVPGMGEEIRKLVEEA
                     LFESRVEVHTQTRVVRVTAKTITLDHNNTQTELETAAVVWNAGVRVSPLIENLVVEKD
                     NHDLILVKPTLQVPDHENVFALGDIAFYKDVVPTLAGTGQLAFQEAGLLARNVRAFIE
                     GRELKSRHFAELGEAVSLGTERAAVLTAGKAIGGPLARQARFALYSGRLPTWHHRLRV
                     GASWFFEGTSPRPLQPLGF"
     gene            9112..9489
                     /locus_tag="VHD88_00505"
     CDS             9112..9489
                     /locus_tag="VHD88_00505"
                     /inference="COORDINATES: protein motif:HMM:NF024759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GxxExxY protein"
                     /protein_id="HVS20290.1"
                     /translation="MTENEIATIIVDAAYTIHKRLGPGLLESVYETTLAYELEKRGPQ
                     MRRQQAMPVVYESVRMDIGFRADLIVADKVIVEIKSVEAVSPVHRKPLLTYLRLTDKR
                     LGLLINFNVELIRDGIARVVNNL"
     gene            9498..11015
                     /locus_tag="VHD88_00510"
     CDS             9498..11015
                     /locus_tag="VHD88_00510"
                     /inference="COORDINATES: protein motif:HMM:NF012503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016830 - carbon-carbon lyase activity
                     [Evidence IEA];
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-dependent decarboxylase"
                     /protein_id="HVS20291.1"
                     /translation="MFHAKALRKTKSAKTGAEEPTGDMSTEDFRRHGHEIVDWIANYF
                     ERIEELPVLAQIEPGDLKAQLPSSPPEQGESMDAILADVDRLIVPALTHWSHPSFFAY
                     FATSTSAPGIFGEMLSAAFDAKAMLWRTSPASTELEEVVLDWLRQMMGLDAGFSGIIY
                     DTASVSSMHAIATAREGVELRIREEGMSGRNDLPLLRVYASEQAHSSIDKGIITLGLG
                     QRALRKIPADSEFRMNAQALSEAIDEDKRNGFLPFCVVATVGTTSTSSVDPVPAIIEV
                     CEKHSLWLHVDAAYAGPAAIVPEMRHILNGCERADSLVLNPHKWLFTPFDLSVLYCRH
                     MDLLRRAFALVPEYLRTPEQEKVRSGSDYGVQLGRRFRALKLWMIIRYFGHEGLAARI
                     REHCRLAKLFASWVEESPNWELLAPLPFALVCFRACPQVKGETEEVRAKRLDALNEAI
                     MHGVNATGQAFLSHTKLNDKLTLRLSIGNIRTTERHVRRVWELLNEQLKRLTAQN"
     gene            11041..11298
                     /locus_tag="VHD88_00515"
     CDS             11041..11298
                     /locus_tag="VHD88_00515"
                     /inference="COORDINATES: protein motif:HMM:NF019491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dabb family protein"
                     /protein_id="HVS20292.1"
                     /translation="MLTHIVVWKYRADVTQATREEHVERLKSLSTVVPGIESLSVGFD
                     TLHLPRSYDTGLVAEFRDRAALDAYTAHLDHVKVAEFGRGH"
     gene            11382..>11635
                     /locus_tag="VHD88_00520"
     CDS             11382..>11635
                     /locus_tag="VHD88_00520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20293.1"
                     /translation="MKRRKMLIVLLGILLVSQLPFAYRRYRLSHLHNAIQQLASQRVS
                     QSTESAFVDYQGVIHVHSSLGGHSTGNFSELIAAAKANQL"
BASE COUNT         2456 a         3260 c         3277 g         2642 t
ORIGIN      
        1 ttcgatccca gacagaacat cgaaggcggc gcgcgttatc tgcggttcct gctcgatcac
       61 tttgacaacg atgtggacct cgcgctcgca ggatataacg ccggcgaagg cgccgtggaa
      121 aagtatggtt ggcaagtgcc gccgtattct gaaactcagg aatacgttcg gcgcatctcg
      181 cggcgttacg ctctgctgcg cgatccgaat gcggcgctct atgcaccgcg agtgacaacg
      241 gcgcaacttg ccagaatgca gggcaaacag tccgagcctt tgacggttta tgagcggacg
      301 gtcttgactg tgcgcttacc cgacggaaga ttgcagttga tgagtcaata agagcccgta
      361 tattcttgtt ttcaaacgag gcgacgcacc tggatgggtg agtcgcctcg tttttcattt
      421 caggaagagc gctctttatg tatcatgtgc gccaagataa gtgcatcaag agttggcgcg
      481 gaagcgtata agtgaggagc gaggtttatg gcgatgcgat gtacaacctg cggagcgatg
      541 ctcgacccgg acagccgttt ttgcaagggc tgcggcgcgc cggcaggcga tgctgaagaa
      601 accagaattg cgcggcctca gtccgcggtc ccggcgcatt acggtgacga tgacgtagag
      661 agcgtagtct ttaccgtgag accgacaatg ctcttcatca agatcggtta tgcggcggcg
      721 gtgctgggcg cagtgctgct gacgattctg ctggccatga ttcgcatagt ggataattac
      781 tggtatttct ctctgccggt cgcgctcggt ctgctgctga ttcccgcgta ctatcatttg
      841 aagcgcaaca tggttcgcta tacgctgacc gattcgaaga tcgaaatcga ttacggcctc
      901 atcgcgcgaa cgacgcgcaa tattccgctc gcgaagattc aggacgtcac agtctcggct
      961 tcaattcttc agcgcattct cggcttcggc gacgtcgtag tcgataatgc cagcgaagtt
     1021 ggcggcacaa ctattcttca caatatcaac aatccccgcc actatgccga cctgcttttg
     1081 cgagagctgc ggcattggca ttagactgac tattagttgg ttcgtcagct ctcgaggacc
     1141 acgggaacat tttgttttcg actaggttct aactacgcag ggctcagaac ttttcgcaac
     1201 gacgtgcgct catcattact gacaagaggc attctgatta tcagcattgc ggcctatgtg
     1261 tgtgcagcag cgtcggctac ggctgatgca ccgcccttga atgatgtagc gaaactcttg
     1321 ccgaatcggc ttggcgattt cgaagcagaa ggtcccacta aaccttatgc tggtttggta
     1381 ttcaagaccg ccacttttca ggattacagc ccttcatctg ctggacaacg tacttataag
     1441 ctgacgacgg cttcagcacc gatgaaccag ttcgtggcgt atgtagtcaa aacgaactct
     1501 gaatctgccg catacgctct cttaacagcg cacgtcaatt tgtggcttaa gcttgaggct
     1561 ggcgagccgg catcaaaccg tttgacgccg cccctcgcga tccacacgaa cgagatcggc
     1621 acggcaagcg caatcggaaa cacaatcgca tttggcgaag tcacgttcgt taagggctca
     1681 acctacgtcg cgatcggtgg accaggctat gaaacttccg acatcaggcc aatggaatca
     1741 ctcgctaagc tcatcgcaag tacgatcgcc aagggcgaag gcgaaatccc ggttcttgtg
     1801 aagcatcttc cggattggga aaaagcggac gcgcgcgcct tgtatgccgt aagcttaggc
     1861 tctttgaagg aggttgcggg aatacagccg atctttgatg cactgagttt cgacggcggg
     1921 accgaagccg tcacggcaaa ttacggtcaa tcgcaactcg tcattgttga attcaccacg
     1981 ccgcagtttg ccggcgacaa cgaccggcgc atcgtcgcga agattcagga gctgaagagt
     2041 cagggtcaac cggtgccgac tgcttatcgc cgcgtaggaa actattcggt tcttgttttc
     2101 aatgcgccgg atgaaaagac tgcaaaccag ttgatcgata aggtgaagta cgaacaggtg
     2161 gttcaatggc tgggtgacga cccgcacttg tacgagcgag tccagaacta tttgatccgg
     2221 acaactggcg gcgtcgtggc cgcggtcgtg gaaggttccg ttctctctct gctggtgtgt
     2281 ctcggcatcg gcgggttatg cggcgcgctg ctattccgac gacgccgcgc acagcagcaa
     2341 gcggcttatt cagacgccgg cggcgcagtc cgtcttaatc ttgacgaact caccggcaca
     2401 agcgatcagc acaggtcatt agaaccaggc aagcatgtca aaccagattc tgccgactct
     2461 tgatggtttc tatcttcccg gcgatccctg cggcaccgtc acgttgacat tgacctgcgt
     2521 ttttctcccg ccaaacattc cagctctata cgcaaggaac gcggccacta tcacgatcac
     2581 gaaaatcacg agaacggcga cgacaccaac gctgccgcct ccgccaccat tatcagccat
     2641 ttgtatcctc cctgaaggaa agtatttcgg actagtttgt tccaggggtt taagggggaa
     2701 cgttactgca ttgagattct tagcacacgg ccagagaaaa cgtcaaacgc agcccaaaaa
     2761 ataaaagcag gtgacaacct ttggggggcg ttgtcacctg ctgttgaagg ccctggtttg
     2821 gggctgaatg ttatcggcgg aactcagtcg ttaccgctcc tccgtcgtgg ctttcgcggc
     2881 cgagtgcgtt ctttggccgg ctgaacgtcg cccggctgca ctgtaggtgt cggctggggg
     2941 cgttgcgcgc ccggcggaca gatccagatt tcaaagaagt cggtgtcgcg atagccacca
     3001 ttgataatgg tgatccgtcc ggcatcaact ccgcgctgat tcaccagata atccatagtg
     3061 cgcttggcaa gcatgtcggc ttggccgaca cggctggtcc gtccggcgta gatgatgacg
     3121 taggcctgcg agtcaggagc gttctgcaac tcgatcgcca ggttatcaaa gcgcgccttg
     3181 tcatcgtcaa aggccaccga ctggaattga tcgaatggtt tgcactcaac caccggcggt
     3241 ttcttcggaa tgatgctggt tgaagcttgc gcgctctggc gacacatcgc atcacctgac
     3301 ccgtcatcga ccgccaaggt cgccgtgatg cgctggctac caagaccggt cgaatcaacc
     3361 gtgatggtag cagtgcccgc gccgctgaca atcctcgcat cggacggagt gatcgtccag
     3421 gtgtagttga gcgtccccga accgccgtac gcattatcag aagtaaacgt gatcaagtcg
     3481 ccatcgttca cgctgacggg cgccgaaacg ttgaccggat agggacaagg agacggagga
     3541 ggcttggcaa cggtgtactt ctttggatga tagttgagat tgacgcacag cttgcgaccc
     3601 tgttggatat caaagtcgcg cacccagcgt ccgccgttgg gcagcagaat ctctacgttg
     3661 tgatggccgg gatccaattc gatcacgcga accgtggtcg aagtgtcgcc ttcaggcttg
     3721 ccatcgatgc gcagcggaaa gccgcccggg ttggtcgcga tctcgatcgt gccgtaattt
     3781 actttgcgct tctttttggc gaatgccgtc gtagaagtgc aggccagcgc gaacgacaga
     3841 gcgatcatga ttgtgaccgc tgctttgatg atcgcggagt tggagcgaac ggcaaccacg
     3901 aaatttttct tgttcatcgt tagacctctg tcatggctgc agcttgtttg ctcgcgcgcg
     3961 tcttagcgta gcggcgtcgc gcacccgcgc ttagcgccac gagtccagag cccaacagaa
     4021 gcaatgaagc cggctcgggc actggcggtg tcggcatcgg cgtcgatact tcaggcggcg
     4081 gaaccctgtg atgatgacaa attcctgtca cgcagaccag cggaaccaaa gccagcaacc
     4141 accatttcga aatgccgccg ccgacggaag gaatctcgcc gcagtcgcaa atcgtgccgt
     4201 caacattgtc ctgctcaaag acctgaacgt cgccctgggg cttttggggc gcaacttcag
     4261 ttccagcgac cagcgaaggc gctacacttt cggttgcgga aacgagcgaa gccgaagctg
     4321 gcagagcgtt gccgtcagcg gacggaacag ccggggcgac gccagttctt gacgccgcac
     4381 ctgtggaggt tggcgcgctc ggatcctgtg cgactcgcag tcggagctgc tcgatctgac
     4441 cgcccttctg caggtcgccc atgacattca cgatgtcggc gaatttgatt ggactagctt
     4501 gcgccggtac cgctaccaac aacagcaagc tggccatcgt cgccataggc cggaaaaaac
     4561 gggttctcat ctgattaggc aactccctct tctaggactt tcgcgtcggc gttttagctg
     4621 ctcggtctgc acctgacact caagaatttc ttcgattacg gagacacacc ggagacagcc
     4681 tgccgtgggt acaagccttc aagacccttg cgggcttgtt tttacctgtt agggaaacag
     4741 agttaatgcg gaggggattc cagtttcaga aaagggtcta gcgcgagttt gcgggcgagt
     4801 tttagagaag cgggcgaaca gccttgcggc cagagcgccc gcttgctcga ttgagtatca
     4861 ggcgccatcg tggccgcctg ctgcgtcggc ctgattctcg tctttcaaaa tggccttgcg
     4921 cgacaatttg atcttgttgc cgtccttgcc gatgcacttg accatgatct gctggccttc
     4981 cttcaactca tcgcgcacat cgcgaatgcg gcggtccgct atttccgaaa tgtgcagcag
     5041 tccgtcggtc ccgggaaaga tctcgacgaa tgctccgaaa tcgacaatgc gattcacggt
     5101 gccgacgtag gtctggccga tttcggcttc cgcggtgagg ccgcgtatgc gagcgactgc
     5161 cgcttcggcg gcggcgctgt cggcggtggc aatcgaaacg gtgccatcgt cttcgacgtc
     5221 aatcttcgca ccagtctctt cgaccaaagc acgaatcact ttgccgcccg gtccaatcac
     5281 gtcgcgtatc ttgtcgggat tgatcttgat tttgataatg cgtggcgcgt gcagagagat
     5341 ttccgcacga gccgcaggaa gcgcttgctc catcgcaccc agaatgtgca gacggccttt
     5401 ctttgcttgg gctaacgcct cagccatgat ttgagcgttg accccagtga tcttgatatc
     5461 catctgtagc gcggtgatgc cgtcgcgcgt accggcgact ttgaaatcca tgtcgccgta
     5521 gtgatcttcg gcaccggcaa tgtcggtcag gatcgcgtac ttgtttcctt ccatcaccaa
     5581 acccatcgcc acgccggcaa ccggagcttt caacggcacg ccggcatcca tcatcgagag
     5641 cgctccgccg cacaccgtgg ccatcgacga cgagccgttc gattcagtga tgtccgacac
     5701 gatgcgaagc gtgtatggga atgtcgtgtc gtcgggaagg acggcttcga gcgcgcgccg
     5761 cgccaacgcg ccatgtccga tctcgcgtcg cgacgacgag ccgaagcgtc caacttcgcc
     5821 aaccgaaaaa tgcgggaagt tgtaatgcag cagaaagcga cgcttcactt cacccttttc
     5881 gagatcgtcc atgaactgct cgtcttcttt cgtgccgagc gttgtggtga ccagggcttg
     5941 cgtttcaccg cgcgtgaaaa gtgccgagcc gtgcgcgcgt ggcagccagc cgacttcgca
     6001 cgtaatcgcg cgaatctcgg aaaagcggcg accgtcgggc cggcggcgtt gattcaaaat
     6061 gtcgtcgcgg aaaatgtttt ctttcaaatg atcgaaacac ttctttgcca tcgcgcgctg
     6121 ttccggctga tcttctggat aagactcgac aacttccttt ttcagcgcgt caacagccgc
     6181 gtagctcgcg cgtttttcct ggcccgaagt gtctaacgcg gcccgcaatc gctcggcata
     6241 gttgtgctgg atttcgccca ccatttcttc attgagcgcc ggtggctcga ccgcgcgctt
     6301 ctcgataccg agcgccttgt agagttcttt ctgccagcgg cagaggcggt tgatttcttt
     6361 atgcgccagc atcaacgctt caaccatgat ctcttccgac acttcctgag cgccggcttc
     6421 gaccatcacg atcgcttctt ccgtaccggc gacaatcagg ttgagccgcg actctcgaac
     6481 ttcatcgtaa gtcggattga cgatgtagcg gccgtcaatc aatccgatgc gcacgccggc
     6541 gattggagtc gaaaacggaa tgtctgaaag ataaagcgcg caggacgcgc cggtgatcgc
     6601 caccacatcg ggattgttgt cagggtcggc cgagatcact gtggtgatta cctgcgtttc
     6661 gttgcggtag cctttagtga atagcgggcg gcaaggtcga tcgatcagac gacaggtcag
     6721 cacttccttt tcattgggcc ggccttcgcg ccgaaaataa tttcccggaa tgcgcccggc
     6781 cgcgtagttc gcttcgcggt attcgatcgt aagcggaaaa aagtcaatgc cttcgcgcgg
     6841 cgtttgcgag ccaaccgcgg cgcacaggac catcgtgtcg ccgtagccga tgacgcaaga
     6901 gccatccgcc tgtttggcga cgcgaccaac ttccacggtg aggtcgcgat caccaactcg
     6961 aattgattcc ttgagatatt tcttaactgt catgttcgtt tgtctccttt gagaacccgg
     7021 ctccaggcca ggcacgcagc gtctcatccg ttgcgctttg gtttggttgt tcggttgtcg
     7081 cgccttcgct tcaagcgata gatttgcgcg gcgtaaaatt tctgcgaata gcagagaagg
     7141 cggcagagcc tagccgtgaa gctctcgccg ccctctctat tttttgaggc cacacgcgcc
     7201 gcctggctac ctttatcgcc gtcacgttcg gctcggggca caagctcttc gattggcgcg
     7261 ggcttttatc agagattcga agattctctt tcgtttgttt tcgttcgctt tatttttcgt
     7321 ccaacaattc tctggttcgg ttaccggcgc aatccgagcc ggcccactac atcgtggtag
     7381 cgctggatgt caattcgttt caagtagtcg agcaaactcc ggcgctgcga gaccatcttc
     7441 agcaggccgc gtcgcgaatg attgtccttt ttgtgcgtct tgaaatgctc ggtgagttcg
     7501 ttgatgcgct ggctcaacag cgcaatttgg actggggctg agcccgtgtc cgtttcatgt
     7561 cctcgaaaat cggtgacaag cttttccttc gcttctcttg ctaacgccac tgctaaaaat
     7621 ggccctcctg aaccgcagta aacccgtatg taaacggcag accacgaaaa cttgaattgc
     7681 aaccagaagt taacactttg gttgcgcggc tgtccagccg ggagagatcg ggccttatgg
     7741 ctgaatcgtg cgcctacaaa ctttgtctga taacatttgc cgctcaaacg gttggcgatt
     7801 tgactgcgac ttcatgactc agataaagcc cagaatcctg atcatcggcg gcggttttgg
     7861 cgggctgttc agtgcactcg atcttagcag tgccggagac atcaccctcg tcagcgaaga
     7921 agatcatttc ctcttcacgc cgatgctata cgagtatctg agcggagagg tacaagcctg
     7981 gcacattggg cccgattaca aagaactact tgacgaaaat gtccttttga ttcgcggggt
     8041 cgtgaccggc attaatctga atcgccgcga agtgacgatt gaaagccgcg ccgaaaagct
     8101 cgcttacgat gttctggttc tcgccgtcgg cggcgtcacg aattatcgag gcatcgaagg
     8161 agccgagcaa ttcacgctgc catttcgcaa actcgcgcac gccaacgcgc tgcgccggcg
     8221 catgacggaa gcgctcgatc atgtgcagcc tgacgccgcg ccacaagacg cgcgccgcgc
     8281 tttgactttt gccgtagttg gcggcggcgc gagtggcgtc gagttggcga cgaagatggc
     8341 cgatctcctg caagacgcct ttcgccggcg agcgttgcag ggcgagcccc gcgtgttggt
     8401 gatcgaaatg accgaccgcg tcgttcccgg gatgggtgaa gagattcgca agcttgtcga
     8461 agaagcgctc ttcgaatcgc gagtcgaagt acacacccaa acacgcgtcg tacgcgttac
     8521 ggccaaaacg atcacgcttg atcacaacaa cacgcagact gaattggaaa cggccgcagt
     8581 tgtgtggaat gccggcgtgc gtgtcagtcc tttgatcgag aatctcgttg tcgagaaaga
     8641 taaccacgac ctcattctcg tcaaacccac tttgcaagtg cccgatcacg agaacgtctt
     8701 cgcgctgggg gacatcgctt tctacaaaga cgtcgtgccg acgcttgcgg gcacgggtca
     8761 actcgcgttt caagaagcag gtttgctggc gcgcaacgtg cgcgcgttca tcgaaggccg
     8821 cgaactaaag tcgagacact tcgcggaact cggcgaagca gtcagtctcg gcactgagcg
     8881 tgctgcggtg ctcactgccg gcaaagccat cggcggcccg ctcgcgcgac aggcgcgctt
     8941 cgctctgtac agcgggcgac tgcccacgtg gcatcatcgt ctgcgcgtcg gcgcgagctg
     9001 gttcttcgag ggcacgtcac cgcggccgct gcaaccgctg ggattttagt cgagttcttc
     9061 tttgcgtctt tcgttcttct tggcgccttt gcgtgaggct tttcagtgct catgaccgaa
     9121 aacgagatcg ccaccatcat cgtggacgca gcttatacga ttcacaagcg tttgggtccc
     9181 ggccttctgg agtcggttta cgaaaccacg ctggcctatg aacttgaaaa gcgcggcccg
     9241 caaatgcgca gacaacaggc gatgccggtc gtttacgaaa gcgttcgaat ggatataggc
     9301 tttcgcgcag atttgatcgt tgcagacaaa gtcattgtcg aaatcaaatc agtcgaggcc
     9361 gtttcgccag tgcaccgaaa gccgctgctg acttacttgc ggttgactga caagcggctt
     9421 ggcctgctaa tcaacttcaa tgtcgaattg attagggacg gaattgcgag agtcgttaat
     9481 aatctttgag agccaatatg tttcacgcaa aggcgctaag aaagactaaa agcgcaaaga
     9541 ccggagctga agaacccacc ggcgacatga gcaccgaaga ttttcggcgc cacggccatg
     9601 agatcgtcga ctggatcgcg aattatttcg agcgtattga agagctgccg gtgctggcgc
     9661 aaatcgagcc cggcgatctt aaagctcaac tgccatcatc gccgccggag caaggcgagt
     9721 cgatggatgc gattctggcc gacgtcgatc gcttaatcgt tccggcgctc acgcactgga
     9781 gccatccgtc gttcttcgct tatttcgcga catcaacttc cgcgccgggg atttttggcg
     9841 agatgctgag cgctgctttc gatgcgaagg ccatgctctg gcgcacgtct ccggcatcaa
     9901 ctgaactgga agaagtcgtg ctcgattggc tccgacagat gatgggtctc gacgccggct
     9961 ttagcggaat tatttacgac actgcgtcgg tttccagcat gcatgcgatc gccacggcgc
    10021 gcgaaggcgt cgagctgcgc atccgcgaag aaggcatgag cggacgaaac gacctgccgc
    10081 tgctgcgcgt ctatgcttcg gagcaagccc actcttcgat cgacaagggt atcatcacgc
    10141 tcggactcgg ccagcgagca ctacgcaaga ttcccgctga ttccgaattc cgcatgaacg
    10201 cgcaggcgct ctctgaagcg atcgacgagg acaaacgcaa cggcttcctt ccattctgcg
    10261 ttgtcgcaac ggtgggcacg acttcaactt caagcgtcga tccggtgccg gcgattatcg
    10321 aagtgtgcga gaaacactcg ctgtggctac acgttgacgc ggcgtatgct gggcccgctg
    10381 caatcgttcc cgaaatgcga cacatcctga atggttgtga gcgcgcggat tcattggtgc
    10441 ttaatcctca taagtggctg tttacgccgt tcgatctttc tgtgctttat tgccggcaca
    10501 tggatttgct gcgtcgagct tttgcgcttg tgcctgaata tctgcgcacg ccggagcagg
    10561 aaaaggtacg cagcggatcg gactacggcg tgcaacttgg ccgccgtttt cgcgcgctga
    10621 aactgtggat gatcattcgt tactttggtc acgaagggct ggccgcacgc attcgcgagc
    10681 attgccggct ggcaaagttg ttcgcgtcat gggttgaaga atcgccgaac tgggaactgc
    10741 tcgcgccgtt gcctttcgct ttggtttgct tccgagcttg cccgcaggtt aaaggtgaaa
    10801 cggaagaggt tcgagctaag cgacttgatg cgctgaacga agcgatcatg cacggcgtca
    10861 acgcaaccgg gcaagcgttt ctgtcacaca ccaagctgaa cgacaaactg actctgcggt
    10921 tgtcaatcgg aaacattcgc acgactgagc gccacgtgcg tcgagtttgg gaattactga
    10981 atgagcaact gaaacggcta acggctcaaa actgaaaact caaaactgga tattctcaac
    11041 atgcttacac acatcgttgt ctggaagtac cgtgctgatg tcacccaagc cactcgcgaa
    11101 gaacatgtcg aacggctgaa gagtctgagc accgtcgttc caggaatcga aagcctgtcc
    11161 gtgggcttcg acacattgca cctgccccgc tcgtacgaca cggggctcgt cgctgagttt
    11221 cgcgatcggg cggcgctgga cgcgtacacc gcgcatctcg atcatgtgaa ggtcgcagag
    11281 ttcggccgcg ggcattagcg acctggtggc gtcggtcgat ttcgaagatt aaacctgatt
    11341 tccttccggc ctgatgcaac gctgaactac aatccaaccc aatgaagcgc cggaagatgc
    11401 tgattgtgct gctgggaatc ctgcttgttt cccagcttcc gtttgcttat cgccgttatc
    11461 gcctcagcca tctccacaat gcgattcagc aactcgcctc gcaaagagtt tctcagtcaa
    11521 ctgaaagcgc gttcgtcgat taccagggcg taattcatgt tcactcttcg ctgggcggac
    11581 acagcacagg aaatttttct gaattgattg ccgcagccaa agctaaccaa cttga
//
LOCUS       DASZZE010000030         2804 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_163772, whole genome shotgun sequence.
ACCESSION   DASZZE010000030 DASZZE010000000
VERSION     DASZZE010000030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2804)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2804)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2804
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163772"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            138..1241
                     /locus_tag="VHD88_00525"
     CDS             138..1241
                     /locus_tag="VHD88_00525"
                     /inference="COORDINATES: protein motif:HMM:NF015739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsQ-type POTRA domain-containing protein"
                     /protein_id="HVS20294.1"
                     /translation="MREQVIATRGSRRSAVPAKGFVQRPTRRDGRTAGAPSRFSPRAI
                     FGYLPSALKFVLAIIAVVSLIVGYRVAASASLFQVRSVDVSGTSRTSAEEIEGLARRA
                     VARTGIWRADLTAISAELGRLPGVRRAIVTRVLPDRLRVRVTERVPVAVVRTAAGHFV
                     WVDDEGVALGEMKPVDRMPSFFIRGWNEDGTEDARKENAERVQKYLEVAREWEAAGLS
                     ERVSEVNLIDVRDVRAQLAGNDSQIEVRLGAQDLNKRLKRAIEVLDEYRNTPRGAFIT
                     YIDFQGNHVIVGSSSGDKISATTKVPEPAPSSTATGSTPLSNARAANANTTVRKNSGV
                     TSSNANSNANNANNRNSSQRDKKPGENTRSRLR"
     gene            1285..2547
                     /gene="ftsA"
                     /locus_tag="VHD88_00530"
     CDS             1285..2547
                     /gene="ftsA"
                     /locus_tag="VHD88_00530"
                     /inference="COORDINATES: protein motif:HMM:TIGR01174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043093 - FtsZ-dependent cytokinesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HVS20295.1"
                     /translation="MAKRSNHTIGLDIGTSKVTCIVAGSSEDALLQIIGMGEAEARGL
                     RKGVIVNPDAAVEAIKRAVEEAERMSGVQAEEVTINLAGSHIMGFNGQAIVAVVGRDR
                     EITGDDVRRAIDSACAVQLPAGREIVDRLPQEFIVDDQDGINDPVGMTGARLAVKVHI
                     VTSPVTARQNAINAVNRAGLMVADMILEQLAAAEATLTDDDREYGSALVDIGAETTGL
                     CVYQRGAVQHTAVFPLGGSHFTNDIAFGLRTPIPEAERIKRAVGCASSASLSDDQRGE
                     MVEVPSVGGRAPRQLSRQILCDILQPRAEEVLMHVADEIRDSGWNRQLSSGVVLTGGG
                     ALLDGMVEIAEQVFDAPVRVGYPERDRFGGLIEDIQSPAWAAAAGLALVSQRAHALEQ
                     RSGAAKRGASGRLTHFVSKFRNRFSSIL"
BASE COUNT          602 a          764 c          899 g          539 t
ORIGIN      
        1 atcgtcaccg aaggcgacga tgctacagcc gcggacgcgc tggctctggc cgaggaaatc
       61 cgggagcgtg tgaaacatga acagggaatc gatctggaat acgaagttga gttgtggcgg
      121 agtgagtagg tgaaacaatg agagaacaag tcatcgcaac acgcggctcg cgtcggagtg
      181 cagttccggc aaaagggttt gtccagcgtc cgactcgtcg cgacggtcgc acggccggcg
      241 cgcccagtcg cttctcgccg cgcgcgattt ttggctatct accgtcggcg ctgaagttcg
      301 tcctggcaat cattgcggtc gtgagtctga tcgttggcta tcgcgtcgcg gcctcggctt
      361 cactatttca agtgcgcagt gttgacgtga gcggcacttc gcgaacttcg gctgaggaaa
      421 ttgaaggcct agcgcgcagg gccgtggcgc gcactggcat ttggcgagcc gatctcacag
      481 caatcagcgc tgagttgggt cgattgcccg gagtgcggcg tgcgatcgtt acacgcgttc
      541 tgccggaccg cttgcgagtc cgcgtgaccg agcgcgtgcc cgtggctgtc gtgcgcaccg
      601 cagccggcca ttttgtctgg gtcgatgacg agggtgtggc actgggagaa atgaagccgg
      661 tggatcgcat gccgtcgttt ttcattcgcg gctggaacga agatggaacc gaagatgctc
      721 gcaaagagaa cgctgagcgc gtccaaaaat acctcgaagt agcgcgtgaa tgggaagccg
      781 ccgggctgtc agagcgcgtg agcgaggtta acttgatcga cgttcgcgat gtccgcgcgc
      841 aacttgccgg aaacgattcg cagatcgagg ttcggctcgg cgcacaggat cttaataagc
      901 gtttgaaacg ggcgatcgaa gttctcgacg aataccgaaa cacgccccgc ggcgctttca
      961 tcacctacat cgatttccag gggaaccacg ttattgttgg ttccagttcg ggcgacaaga
     1021 tttctgccac gacgaaagtt cctgagcccg cgcccagctc gaccgccact ggttccacgc
     1081 cactgagcaa cgcaagggca gccaacgcga acaccactgt gagaaagaat tctggagtga
     1141 cttcgagcaa cgcaaacagc aacgcaaaca acgcgaacaa caggaatagt tcgcagcgcg
     1201 acaagaaacc tggggagaac actcgctcgc ggctgcgctg agcagattga gcagtcaggc
     1261 tgatcggacg gaagcaaact gtttatggcg aagcggtcaa atcacaccat cgggctggac
     1321 atcggaacga gcaaggtgac gtgtatcgtc gccgggtcga gtgaagatgc tttactgcaa
     1381 atcatcggca tgggcgaagc cgaagcacgt ggcctgcgta aaggcgtgat cgttaatccc
     1441 gacgcggccg tcgaggcaat caaacgagct gtcgaagaag ccgagcgaat gagtggtgtt
     1501 caggctgagg aagtgacgat caatttggcc ggctcgcaca tcatgggatt caacggacag
     1561 gcaatcgtcg ctgttgtcgg ccgcgaccgc gagattacgg gcgacgacgt gcgacgcgcc
     1621 atcgactcag cttgcgcggt tcagcttccc gccgggcgcg agattgtcga tcgcttgcca
     1681 caggaattca tcgttgatga tcaagatggc ataaacgatc ccgtcggcat gaccggcgcg
     1741 cgactggcgg tcaaagttca catcgttacc agtcccgtga cggcgcggca aaacgcaatc
     1801 aatgccgtaa accgagccgg gttaatggtg gcagacatga tactggagca actcgcagcc
     1861 gcagaagcga cgctcactga cgacgacagg gaatacggct cggctctggt ggatattggc
     1921 gcggagacaa ctggactctg cgtttatcag cgcggtgcgg tgcagcacac cgccgtattt
     1981 ccgctcgggg gttctcactt tacgaatgac atcgcttttg gactgcgcac gccgattcct
     2041 gaggccgaga ggatcaagcg cgcggtcggt tgcgcatcga gcgcgtcgct gagcgacgac
     2101 cagcgtggcg aaatggttga ggttccgtcg gtaggcggtc gcgcgccgcg gcaactctct
     2161 cgccagattc tttgcgacat tttgcagccg cgcgcggaag aagtgctgat gcacgtcgct
     2221 gacgaaatca gggattcagg ctggaaccga cagttgtcga gcggcgtcgt gctgaccggc
     2281 ggcggggcgc tgctcgatgg catggttgag atcgccgaac aggttttcga cgctcccgtg
     2341 cgcgtaggct atcccgaacg cgatcgattc ggcggtttga tcgaagacat tcaaagcccc
     2401 gcatgggctg cggcggcggg tctggctctg gtctcgcagc gcgcgcacgc actcgaacaa
     2461 cgatcaggcg cggcgaagcg cggcgcttcg gggcgcttga cgcattttgt ttccaagttt
     2521 cgtaatcgtt ttagtagtat tctttgacaa agtgttgtat gctggccgcc cggcggcaca
     2581 atatgttgtc cgcaagatat agatgcctgt ggttcagcca gcccaacata gacgaaagcg
     2641 gcagtggaag gcttcccgtt ttgggagaga ggacaaaccc atgacacctg aggtccgtga
     2701 accgggcaga ggcatcaata ttttcatcga cgacgagccg ccgattaccg gcgctcgcat
     2761 taaagtcatc ggcgtcggcg ggggcggcgg caacgccgtc aatc
//
LOCUS       DASZZE010000031         4830 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_212856, whole genome shotgun sequence.
ACCESSION   DASZZE010000031 DASZZE010000000
VERSION     DASZZE010000031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4830)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4830)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4830
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_212856"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>4830
                     /locus_tag="VHD88_00535"
     CDS             <1..>4830
                     /locus_tag="VHD88_00535"
                     /inference="COORDINATES: protein motif:HMM:NF017930.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glucoamylase family protein"
                     /protein_id="HVS20296.1"
                     /translation="DLALSVLNWDVTQVFEPSLLPKIDLSKGVPAEARTMIVVPVIFH
                     DEAAVRALLDKLEIAYLCNRDDHLHFALLGDFADAPTQETPDDGEILDTAKRGVEELN
                     AQYGTDERTPFHFFHRHRQWCETEQEWIGWERKRGKLREFNRLLRGARDTSFIVATAG
                     ELLRQVRYVITLDADTQLPRDAAKRLIGAAIHPLNRPHFDQNEERIVDGYAILQPRVS
                     ISLESASRSPFARIFSGNTGIDPYTTAASDVYQDIFCEGIYTGKGLYDVDAFEKALAD
                     RVPENSLLSHDLFESVFARAALVTDVEFLDDYPAHYDTYAMRQHRWARGDWQIAGWLR
                     RKTTDAHGNKRPNRISLISRWKILDNLRRSLLAPAIVLLLVAGWTILPGSALWWTLFA
                     LLTLAFPVYAHVTTGLLIHPRGIPWTSQFWSVWGDLRANTAQVAVEIVFLAHQAYLMS
                     DAIARTAYRKLSSKKHLLEWVAAAKFEKSSKHDAPAFLRFMWPTEAITLIATVLVVVT
                     RTRSLPVAIPFLLAWALSPLIAFYVSRHRTESVPQFAPKDVRAGRIIARRTWRFFETF
                     VGDEDHWLPPDNFQEDPKPVIAHRTSPTNIGLLLLSTLAAYDFGYVGLSELIERVEFT
                     LGSLEKLQKFRGHFFNWHDTRALTPLWPQYVSVVDSGNLAGHLIALKQACLELPDQQI
                     FDRRVPRGLADTVGAIRQQLSQLSTTRQRTDAISMKQLSEEIESCDTLLATGPPVELR
                     GWSALFDAVAERATVIDDIVAALSVEHRTDEFTELRWWTSSLLHEVTNCRRDLTNLAP
                     WSGLSTTSLSLSHINELRAVPSLASISEICDSALVQLAALRAELGQGSSGAALNELTK
                     LTTAIEQADESAKSFSARLAKIAQTCRRIFDEMDFKFLLDSERKVFTIGYSVTEGRQD
                     NSYYDLLASEARLASFIAIAKGDVPQEHWFRMGRQLTSIDGGRALISWTGTMFEYLMP
                     LLVMRDYRETLLGQTYETVVHRQIEYGYERGVPWGISESAYGARDLQLNYQYGPFGVP
                     GLGLKRGLIEDLVVSPYSTILASSVLPAEAMENLRTLEREGALSRYGFYESLDYTPER
                     VKKGEHCTMVRAYMAHHQGMSLIALDNLLNQSAMQKRFHSEPIVQATELLLQERIPRD
                     VPAAHPRAEEVLTGRVVRTLTGLVTRVYDTADLPTPRTQLLSNGTYSVMVTTAGSGYS
                     MCGPLAVTRWREDGTRDNWGSFCYIRDVRSGAVWSAGHQPVGAKSQSYEVAFSEDKAD
                     FWRRDAGIVTHMDVIVSAEENAEMRRVSVANYSTRPREIELTSYGEIVLAPRADDLAH
                     PAFSNLFIETEYYEPHRALIARRRPRSTKDEPVFGVHVLATAGETIGGIQFETDRARF
                     LGRGHTTADAVSVIEDRPLSNTVGAVLDPVFSLRCRVRLQPNETAQIVFTTGVAKSRE
                     QAIALAEKYRDHGIFERESRLAWTRAQVEMSHLHIDPDEAHLFQRLAGRVLYLDPSLR
                     PRPHVLALNRLTQSGLWSHGISGDLPIVILRLDREEDIAMARQLLRAHQYLRSKGLQF
                     DLVILNDHPTSYAQELQDALTMAVRTFGAQGLLDKPGGVFIRRSDVMPEEERILLHSV
                     "
BASE COUNT          935 a         1388 c         1459 g         1048 t
ORIGIN      
        1 cgatctggcg ctgagcgtgc tcaactggga tgtgacccaa gtctttgagc cgtcactgtt
       61 gccgaagatc gatctttcga aaggcgttcc tgccgaagct cgcacgatga tcgtcgtgcc
      121 ggtaatcttt cacgacgaag cagcggtccg cgcgctgctt gacaaactcg agatcgcata
      181 cctttgcaat cgggatgatc atctccactt tgctttgctg ggagattttg ccgatgcgcc
      241 gacgcaagag acgcccgacg atggcgagat tctcgacacg gcaaagcgcg gcgtcgaaga
      301 actcaacgcg caatacggca cggatgagcg gactccgttt catttttttc atcggcaccg
      361 tcaatggtgc gagaccgagc aggaatggat tggttgggaa cgcaagcgcg gcaagctgcg
      421 cgaatttaat cgcctgctgc gtggcgcgcg cgacaccagt tttatcgtgg ccaccgccgg
      481 cgaattgctt cgtcaggttc gctatgtcat cacgctcgat gccgacaccc aactgccacg
      541 cgatgcagcg aagcgtctga ttggcgcggc gattcatccg ctgaaccgcc cgcatttcga
      601 tcagaacgaa gagcgaatcg tggacggcta tgccatcctg caaccgcgcg tcagcatttc
      661 gctcgagagc gcttcgcggt cgcctttcgc gcgtattttt tccggcaaca cgggaatcga
      721 tccgtacacg accgcggctt ctgacgtcta tcaggatatt ttctgtgaag gcatctacac
      781 gggcaagggt ttgtacgacg tggatgcttt cgagaaagcg ctcgccgatc gcgtcccgga
      841 aaactcgctg ttgagccacg atctatttga atcagtcttc gcgcgcgccg cgctggtcac
      901 ggacgttgaa ttccttgacg actatcccgc gcactacgac acctatgcca tgcgccaaca
      961 tcgctgggcc cgcggcgact ggcaaatcgc cggctggctg cgtcgaaaaa caactgacgc
     1021 acatgggaac aaacggccga atcgcatttc cctgatttcg cgctggaaga ttctggataa
     1081 cctgcgccgc agtttgcttg ctccggcgat cgttctgctg ctcgtcgccg gctggacgat
     1141 tcttccgggc tcagctttat ggtggacgtt gtttgcgctg ctcacgctgg cgtttccagt
     1201 ttacgcgcat gtgacgacgg gactactgat tcatccgcgc gggattcctt ggaccagcca
     1261 gttctggagt gtctggggcg acttgcgcgc gaacacggca caggtggcgg tggaaattgt
     1321 ttttctggcg catcaggctt acttgatgag cgatgcgatt gcgcgcaccg cttatcgcaa
     1381 actaagttcg aaaaagcatc tgcttgagtg ggtggcggcc gcgaagtttg aaaagtcgag
     1441 caagcacgat gcgccggctt tcctgcgatt catgtggccg actgaagcga tcacgctgat
     1501 agcgacggtc ctggttgtcg ttaccagaac ccgctcgcta ccggtcgcga ttccgtttct
     1561 gctggcgtgg gccctgtcgc ccttgatcgc tttttatgtc agccgccatc gcaccgaaag
     1621 cgtgccgcag tttgcgccga aagacgtccg cgccggccgc atcatcgcgc ggcgcacgtg
     1681 gcgtttcttt gaaacgttcg tcggcgacga agatcactgg ctgccgcccg ataattttca
     1741 ggaagatcca aagccggtca tcgcgcatcg cacttcaccg accaacatcg ggttgctttt
     1801 gctttcgacg ctcgcggctt acgactttgg ttatgtcgga ctgagcgagc taatcgagcg
     1861 cgtcgaattc acactgggca gtttggaaaa gctgcaaaag tttcgcggtc actttttcaa
     1921 ctggcatgac acgcgcgcgc tcacaccgct ctggccgcaa tacgtctccg tagtggacag
     1981 cggcaacctc gcgggccatc tgattgcgct aaagcaagcg tgcctggaac ttcccgatca
     2041 gcaaatcttc gatcgacgag tgccccgcgg cctggccgac accgtgggcg caatccggca
     2101 gcagttatcg caactttcca ccacgcgcca acgcaccgat gcgatcagca tgaagcaact
     2161 gagcgaagag attgaatcat gcgacacgtt gctcgctacc gggccacccg tcgagttgcg
     2221 cggatggtct gcgctattcg acgcagttgc ggaacgcgcg acggtgatcg acgacattgt
     2281 cgccgcgctg tcggtggaac atcgcaccga cgaatttact gagctgcgtt ggtggacgag
     2341 ttctttgctt cacgaggtga ctaactgtcg ccgcgatctg acgaatcttg cgccgtggag
     2401 cggactaagt acgacaagct taagcttgtc gcacatcaac gagttgcgcg cagtgccttc
     2461 gctggcgagc atttccgaaa tctgcgacag cgcgctggta cagcttgcgg cgctgcgggc
     2521 cgaactggga cagggttctt ccggcgcggc tcttaatgag ttgactaagt tgacgaccgc
     2581 gatcgagcag gcagatgaat ccgcgaaaag cttttcggct cggctggcga aaatcgcgca
     2641 aacgtgccgg cgaatttttg acgagatgga cttcaagttt ctgctcgact ctgagcgcaa
     2701 ggtattcacc atcggctaca gcgtcaccga aggtcgccag gacaattcct attacgatct
     2761 gctggcgtcg gaggcgcgcc ttgccagctt catcgccatc gcgaaaggtg acgtgccgca
     2821 ggagcactgg tttcgcatgg gccggcagct tacttcgatc gacggtggcc gcgcgttgat
     2881 ctcgtggacc ggcacgatgt tcgaatacct gatgccgctg ctggtgatgc gcgattatcg
     2941 ggaaaccttg ctgggccaaa cttacgagac agtcgttcac cgacagatcg aatacggtta
     3001 cgagcgtggc gtgccgtggg gcatctctga gtcggcgtat ggagcgcgcg atttgcaact
     3061 caattatcag tacggtccgt ttggcgttcc cggactaggg ttgaagcgcg gattgatcga
     3121 agacctggtg gtctcgcctt actcaacgat tctggcttcg agtgttttgc cggctgaggc
     3181 gatggagaat ctgcgcacgc ttgagcgcga gggcgcgctt tcgcgttacg gtttttatga
     3241 gtcgctggac tacacgccgg agcgcgtgaa gaaaggcgag cattgcacga tggtgcgcgc
     3301 gtacatggcg catcatcagg gcatgagtct gatcgcgctc gataatctgc tcaaccagag
     3361 cgcgatgcaa aagcgatttc atagcgagcc gatcgtgcag gccactgagt tgttgctgca
     3421 agagcgcatc ccgcgcgacg tgccggcggc gcatccgcgc gcggaagagg ttttgacggg
     3481 gcgcgtcgtg cgtacgctca cgggccttgt cacgcgcgtg tacgacacgg ccgatctgcc
     3541 gacgccgcgc acgcaattgc tgtcgaacgg aacttatagc gtcatggtta cgaccgcggg
     3601 ctctggttat tcgatgtgcg ggccgctggc cgttacgcgc tggcgcgaag acggcacgcg
     3661 cgacaactgg ggcagctttt gttacatccg cgacgtgcgc agcggcgccg tttggtcggc
     3721 gggccaccaa ccggtgggcg ccaagtcgca gagttacgag gttgcattct ccgaagacaa
     3781 ggccgatttc tggcgtcgcg acgcgggcat cgtgacgcac atggatgtga tcgtctcagc
     3841 cgaagaaaac gctgagatgc gccgggtgtc ggtggcgaat tactcaactc gtccccgcga
     3901 gatcgagtta accagctatg gcgaaatcgt gctcgcgccg agagcggacg atctcgctca
     3961 tccggcgttc agcaatctgt tcattgaaac tgaatactac gagccgcacc gcgcgttgat
     4021 cgcgcgtcgt cgcccacgtt ctaccaaaga cgaacctgtt ttcggcgtgc acgtactggc
     4081 gacggcgggc gagaccatcg gcggaattca gttcgaaacc gatcgcgcgc gttttttggg
     4141 ccgtgggcac acgactgccg atgcggtctc agtgatcgag gatcgcccgc tgtcgaacac
     4201 agtcggcgcg gtgctcgatc cggtgttcag cctgcgttgc cgcgttcgct tgcagccgaa
     4261 cgaaactgct cagattgttt tcactacggg cgttgcaaag tcacgcgagc aagccatcgc
     4321 actcgccgaa aagtatcgcg accatggcat ctttgagcgc gaatcgcgac tcgcttggac
     4381 gcgcgcgcag gttgagatga gccacctgca catcgatccg gacgaggcgc atctctttca
     4441 gcgactcgcg ggccgcgtgc tttatctgga tccttctctg cggccacggc cgcacgtgct
     4501 ggcgctgaat cgcttgacgc agtccgggct ttggtcgcac ggcattagcg gcgatttgcc
     4561 aatcgtcatc ctgcgtttgg atcgcgaaga agacatagcc atggcccgac agcttctgcg
     4621 cgctcatcag tatctgcgat cgaagggtct gcaattcgat ttggtgattc tgaacgatca
     4681 tccgactagc tatgcgcaag agttgcagga cgcgttgaca atggcggtgc gcactttcgg
     4741 tgcgcaaggc ttgctcgaca aacccggcgg cgttttcatt cgtcgctcgg acgtcatgcc
     4801 ggaagaagag cgaatcctgc tgcattcggt
//
LOCUS       DASZZE010000032         9158 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_66466, whole genome shotgun sequence.
ACCESSION   DASZZE010000032 DASZZE010000000
VERSION     DASZZE010000032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9158)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9158)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9158
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66466"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..376)
                     /locus_tag="VHD88_00540"
     CDS             complement(<1..376)
                     /locus_tag="VHD88_00540"
                     /inference="COORDINATES: protein motif:HMM:NF013775.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HVS20297.1"
                     /translation="MSQALQTSPNAFTSSARERLANYLAQQQRVRKSEIVPLTPDAST
                     REYFRIPWKRGSAVAAIYPEPFDPAVHPYLDVTRLFAECELPVPDVYDTEGAAGIIVQ
                     EDLGDQQLCKVFESLSNEEREAL"
     gene            complement(447..1433)
                     /locus_tag="VHD88_00545"
     CDS             complement(447..1433)
                     /locus_tag="VHD88_00545"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NDP-sugar synthase"
                     /protein_id="HVS20298.1"
                     /translation="MKAMILAAGYGERLWPLTADRTKPALPVLGKPLVGYVAEYLAKH
                     GIKDVIVNLHHRPDSVRAALGDGSRFGVRLEYVHEPEILGTSGALDNARDLLSGETFV
                     VINGKLITDIDLKAAFETHRRTRALATLVLRRNPTRERFSIVETRDGLVTKFAGMPDP
                     QESQFDSTDAPLMFTGIQILEPRIFDYIPRGVFSHSTLDVYPQAIANGERIAAHVGEG
                     MWYELSTLRRYLDISLALLRQSGRDLNTGRDPVIAADADVHESVLWDDVTVEKGARVR
                     RAILGDGVRISANEHLEEAVVVRAELVAGITPPAKALEGHVIGDNFVVLLSQ"
     gene            1720..2871
                     /locus_tag="VHD88_00550"
     CDS             1720..2871
                     /locus_tag="VHD88_00550"
                     /inference="COORDINATES: protein motif:HMM:NF013126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HVS20299.1"
                     /translation="MPSDSLSSLPFEQQIGQFFFIGLPGTELDEETRALIEEIKPGGI
                     IIFGRNVATPEQLRGLLDGARALLPVEPLCGIDQEGGLVDRLREIFPPMPSARAIRQH
                     GDLAGARTLGSVTGEALRMLGFNLNFAPVMSIITEQRSQLTNGLYSRSFGSSPGEVLG
                     YTTVYMRGLQATGMLGCLKHFPGIGAGAVDSHMEMPVVPLSHDDLIGQDLAPYIELFQ
                     RADDRVRVVMVSHGGFPNIDIKQGTTGGLVEPASISPTIVSKLLRQELAYNHLVVTDD
                     LEMGAIAKHCEIEDATVRAFQAGEDMLLICATPKTIRRGYHALLEAARSGNVHEERIR
                     ESLQRISETKALAQPPTPLDQDKLKRLGEEVLRLNGKLDYNYPGESHVE"
     gene            2954..4483
                     /locus_tag="VHD88_00555"
     CDS             2954..4483
                     /locus_tag="VHD88_00555"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HVS20300.1"
                     /translation="MASSCRRQSSVFVIALSDNVKTIDPIGSPSVDAASERVRALMFN
                     SLVKKDEKFDYVPELASKIDRSEDGLTFTFTLRDGVTFHDGRPFTSADAKYTLDTVLA
                     STFAKAASFFEGSGANKRAYINSVEAPDARTLVIRLNKQWTGLLPNLVPIAMIPKDSY
                     ESQKTHPLGTGPFKFKSYDQSQQVVDMETNAKYWDGPPQITALRARVISDSNALQAEL
                     QSGRVDIAPLPTSLSPDAIKSLGENRNLTVHQFAGSNLNLLTFNTKEAPLNSVKVRQA
                     IAYAINRESMIKDLVLGQGKIAHSILPEESWAYAQGQTYHYDPEMAKKLLDEAGFRDP
                     DGDGPQMRWVKPLLFRISGSSASARQYASVIQNYLKEVGIPVSIETSELGVLLDSLRR
                     GQFQMTYGQWVGGNQDPIFYRDLFATSEIPTETRAARNRSRYSDPELDKILDEASNTY
                     DHAKAAPLYAKAQDIVSGDVPVFPLWYQANMVIAKKSVGNIHVNASGDWGFVKDLTVG
                     K"
     gene            complement(4592..5224)
                     /locus_tag="VHD88_00560"
     CDS             complement(4592..5224)
                     /locus_tag="VHD88_00560"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: protein motif:HMM:TIGR00057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0061710 - L-threonylcarbamoyladenylate
                     synthase [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HVS20301.1"
                     /translation="MVILEDSKPATVQAADIIARGGVIAFRTDTFYGLGADPFNRSAV
                     QRIKALKGGEENKPILVVISELDQVARLLIERSKTFDLLAERFWPGPLTLIGKATPEV
                     PEEIMAGTGTVGLRLPDDEDVRGLIRICGGTLTATSANPSGQQPAKTAQDVENYFASS
                     VDLIVDAGQARTDRPSTVVDVSGATIRVIREGVISGAAVRAALKNVKANS"
     gene            complement(5298..5954)
                     /locus_tag="VHD88_00565"
     CDS             complement(5298..5954)
                     /locus_tag="VHD88_00565"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="O-methyltransferase"
                     /protein_id="HVS20302.1"
                     /translation="MKARIDAIIQREQAEYLDQLLPPSTGLLAEMESYAAEHRVPIAD
                     REVALFLEITARAIQARRVLECGMAIGYSVIHLARAMPEDGLVITIDPSEEMIKAAEG
                     YFMRARVRERVRIEKGYALEVIPHLHETFDLVFIDAVKEEYRGYLDLSLPKLRTGGVV
                     IVDNLLWGGQVAGEIRSPDQKPSTEALRDFNQHFVNHPQLRAEVLPVGDGLGYGVKIS
                     "
     gene            complement(6316..6693)
                     /locus_tag="VHD88_00570"
     CDS             complement(6316..6693)
                     /locus_tag="VHD88_00570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20303.1"
                     /translation="MKYEQVKPIDKTRAKKLLASGDREAICRTLVSVAMFESDRRWAQ
                     GQCLKFARHDVSFVRGVAATCLGHLARIHGAIDEDEVVPVVLGLLRDSDPDTRGKAQD
                     ALSDFSTFLRWNGRKLRKLLAAA"
     gene            complement(6662..6991)
                     /locus_tag="VHD88_00575"
     CDS             complement(6662..6991)
                     /locus_tag="VHD88_00575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20304.1"
                     /translation="MANVIFEPNPKHRSKKRGRVSAQPANGQTAMDNSVQISETSSRR
                     VGVDRENEEIVVLMEHLPGVFHGFVVEWDELERNVQRRLLDLGLVTSRGRILTEDDEI
                     RTSKTDR"
     gene            complement(7052..8503)
                     /locus_tag="VHD88_00580"
     CDS             complement(7052..8503)
                     /locus_tag="VHD88_00580"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HVS20305.1"
                     /translation="MGTRSLRLLIVDDEEASRYGIRRALETFGCEIVEAESAEAARAT
                     MRGQPFDLLLLDVNLPGISGLDFLKELQSGGEDSQAEPPLVIIITAHGSERLAVQAVK
                     SGAYDYISKPFELDDLRLVVKNALETIQLRRENRSLRRRIEIEASQRGALLGNSAAMH
                     EVRSIIEKVADTDATVLVRGESGTGKELVARELHERSSARSSGAFVAVNCAALPTELI
                     ESELFGHEKGAFTGAAARRKGKFEQANGGTLFLDEIGDMSANVQAKLLRALEERRIER
                     LGGDESIPVDVRIVSATHRDLEEEITTGNFRADLFYRLRVVTIDIAPLRQRREDIPGL
                     AEAFSRQVAEHHGLPQRPIARDALKQLMGYAWPGNVRELHNAIERAAIMSEGDELNAI
                     DLQATKSRDAEVETAANGNLLTPYTSDFRDDRREFERRYIARCLEESGGNVTRAASIL
                     GMHRQSLQHKLRELGLGRRYVAVGSAAQGKEDK"
     gene            complement(8597..>9158)
                     /locus_tag="VHD88_00585"
     CDS             complement(8597..>9158)
                     /locus_tag="VHD88_00585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20306.1"
                     /translation="AQDSKPAASTEDETNLDTELYLILATNQQAGEGKIPASLDQVVK
                     QLRNTLPFKNFGLTATLLNRVRSGGHLNLNWVGAPLLAPSSSTISTPSFNEFSIGAVK
                     VVEAYGGQVIRLLRFDFGSRIPIQTSTNIASSGTAVAPVFIYEHIGLVTDISVREGEP
                     AVVGTLNVGSSGDTMVIVIAAKRAPK"
BASE COUNT         1942 a         2676 c         2487 g         2053 t
ORIGIN      
        1 gcaaagcctc ccgctcttca ttcgacaagc tttcaaacac cttgcataac tgctggtcgc
       61 caaggtcctc ctgtacaata attcccgcag cgccttcggt atcgtaaacg tcgggaacag
      121 gcagctcgca ctccgcgaag agccgcgtaa catcaaggta aggatgtacc gcgggatcga
      181 acggctccgg gtaaattgca gcaacagccg acccgcgctt ccagggaatg cgaaaatact
      241 cgcgcgtcga tgcatccgga gtcagcggta caatttcaga tttgcgaacg cgctgctgtt
      301 gagctaagta gtttgcgagc cgttcgcgag cgctgctcgt gaaagcgttt ggacttgtct
      361 gaagcgcctg actcatgcgg agatcgaacc tcgaccgctg ctttttcgca gttgattgcc
      421 gcgctgctaa ggttcagcga atcttatcac tgcgataaga ggacgacaaa gttatcgcca
      481 atgacgtgac cttccaaagc ctttgccggt ggggtgatgc cagcgacgag ttcagcacgc
      541 acgacgactg cctcttcgag gtgttcgttt gcggaaatgc ggactccatc gcccaggatt
      601 gcgcgcctga cgcgtgctcc cttctcgacc gtcacgtcgt cccacaaaac tgattcgtga
      661 acgtcggcat cggcggcgat aactggatcc ctgccggtgt tcagatcgcg tccgctttgg
      721 cgcaggagag cgaggctgat atcgagatag cgtcgcagcg tggaaagctc gtaccacatt
      781 ccttcgccaa cgtgtgcggc gatgcgctca ccgttcgcga tggcctgcgg ataaacgtcc
      841 agggtcgaat gcgaaaagac gccgcgcgga atgtaatcaa agatgcgcgg ttcaagaatc
      901 tgaattccag tgaacattag cggcgcatcg gtggaatcaa actgcgattc ctgcgggtca
      961 ggcattcctg cgaacttagt taccaaacca tcgcgcgttt cgacgatgct gaagcgctcg
     1021 cgcgttgggt ttcttcgcag cacgagcgtg gccagtgcac gtgtgcgtcg atgtgtttcg
     1081 aacgcagcct tcagatcgat gtcggtgatg agcttgccgt ttatgaccac gaaggtctcg
     1141 ccgctaagca gatcgcgtgc attgtcgagc gccccgctcg ttccgagaat ttccggctcg
     1201 tgaacatact ccaagcgaac gccgaaccga ctgccgtcac cgagcgcggc gcgcactgaa
     1261 tccggtcgat gatgcaagtt gacgatcacg tctttgattc catgcttcgc gagatactcc
     1321 gccacataac caaccagcgg cttgccgaga accggcaacg cgggctttgt ccggtcggcg
     1381 gtcagcggcc acagccgctc tccgtaacca gcagcgagaa tcatcgcctt catagctttg
     1441 acattctaaa tgagagcgga tacaaaatgc accgccgcac cgtctcatcg gtggtgtcct
     1501 agtttaattt attctctgcg ttaactctgc gttcctctgc gtctctgcgg tgaatcctag
     1561 ccacgaaaag ctcatcgcag agacgcagag gccgcaaagg ctgcgcagag aagagcggaa
     1621 attgagacac taccgtctcg ccggtctagt tgaatcgtcg ccgttcgtgt cgtaagctgg
     1681 catcgctcag ttatcaacat agcgtcggcg atcatccaca tgccatcaga ttcactttcg
     1741 tctctgccat tcgaacagca aattggacaa ttcttcttta tcgggcttcc cggaaccgaa
     1801 ctcgacgaag agactcgtgc gctgattgaa gagatcaaac ccggcggaat aataatcttt
     1861 ggtcgtaacg tggcgacgcc tgagcaactg cgcggattgc tcgacggcgc gcgtgcgctt
     1921 ttgccggtag agccgttgtg cggcatcgat caggagggcg gtctcgtcga tcgcctgcgc
     1981 gaaatttttc cgccgatgcc ctcggcgcgc gcaattcgac agcacggcga tcttgccggc
     2041 gcgcgcacgc tgggcagcgt caccggcgag gccttgcgca tgctcggctt caaccttaac
     2101 ttcgcgccgg tgatgtcgat cattaccgag caacgcagcc agctaacaaa tggtctttac
     2161 tcgcgctcgt tcggcagttc gcccggcgaa gttctcggct acacgacggt ttacatgcgc
     2221 ggattacagg cgaccgggat gctcggttgc ttgaaacatt ttcccggcat cggcgccggc
     2281 gcggttgatt cgcacatgga aatgccggtc gtgcctttgt cgcacgatga cctcatcggg
     2341 caagaccttg cgccttacat cgaactgttc cagcgagccg acgatcgcgt gcgcgtagtc
     2401 atggtgagtc acggcggttt tccgaacatc gatattaagc aaggcacgac gggcggattg
     2461 gtcgagccag cctcgatcag tccgaccatc gtatccaaac tgttgcgtca ggaacttgcg
     2521 tacaaccatt tggtcgtcac ggacgatctg gagatgggcg cgatcgccaa gcactgcgaa
     2581 atcgaagacg caaccgtgcg cgcatttcag gccggcgaag acatgttgct gatttgcgcg
     2641 acgcccaaaa cgatccggcg cggctaccac gcgctgcttg aggcggcacg ctcaggcaat
     2701 gtacacgagg aacgaattcg cgaatcgttg caacggatct cggagacgaa ggcgctcgcc
     2761 cagccgccca caccgctcga tcaggataaa ctcaagcggc tgggagaaga agtacttcgg
     2821 ctcaacggga aactcgatta taactatccg ggagagtctc atgttgaata gacacaccct
     2881 ggttgcgcgt ccgcagtcgc gccgcttgcc gctgaagtcc ttcgtcctta ccttatgcct
     2941 ggccctgctg tccgtggcat cttcctgtcg gcgccagagc agcgtctttg tcatcgcgct
     3001 ctcagacaac gtcaagacaa tcgatccgat cggctcgcca tccgtggacg ccgcgagcga
     3061 gcgcgtccgc gcgctgatgt tcaattccct cgtgaagaaa gacgagaagt tcgactatgt
     3121 gccggagttg gcctcgaaga ttgatcgatc cgaagacggc ttaacattca cgttcacgct
     3181 ccgcgacggc gtgacttttc acgatggacg tccgtttact tcggccgatg cgaaatacac
     3241 gctggacaca gtgctggctt cgacgttcgc gaaggcggca agcttttttg aaggctcagg
     3301 cgctaacaag cgagcttaca tcaacagcgt cgaggccccg gacgcgcgaa ctctcgtgat
     3361 tcgcctgaac aaacagtgga caggattgct cccaaacctc gttcccattg cgatgattcc
     3421 caaagacagt tatgaatcgc agaagacgca tccgctcggc actgggccgt tcaagttcaa
     3481 gagctatgat caatcacagc aagtcgtcga tatggaaacg aacgcgaaat attgggacgg
     3541 gccgccgcaa attacggcac tgcgtgcgcg cgtgattagc gattcgaacg cattgcaggc
     3601 tgagctgcaa agcgggcgtg tggacatcgc tcctttgccc accagtttgt cgccagacgc
     3661 gatcaagtcg ctcggcgaaa atcggaatct aaccgtccac caatttgcgg gatcgaatct
     3721 gaatctgctg actttcaata ctaaggaagc gccgctcaat agcgtaaagg tccgccaggc
     3781 gatcgcgtat gcaattaatc gcgaaagtat gatcaaggat ttggttttgg gtcagggtaa
     3841 gattgcccac tcgattctgc cagaggagtc atgggcctac gcgcaaggtc aaacttatca
     3901 ttacgatcct gagatggcga agaaactgct cgacgaagcg ggctttcgcg atcctgatgg
     3961 cgacgggcct cagatgcgct gggtcaagcc gctgctgttt cggatttccg gcagcagcgc
     4021 ttccgctcga cagtacgcca gcgtgattca aaattatttg aaagaagtcg gcattccggt
     4081 gtcgattgaa acttcggagc tcggcgttct gttagactcg ctgcgacgcg gccagtttca
     4141 aatgacttat ggtcagtggg tcggcggcaa tcaagatccg atcttctatc gcgatctttt
     4201 cgccacgtcc gagattccca cggagacgcg ggcggcgcgc aatcgcagcc gctacagcga
     4261 tcccgaactc gataagattc tcgacgaagc ctcgaacacc tacgaccatg cgaaggccgc
     4321 gccgctgtac gcgaaggcgc aggacatcgt cagtggcgac gttcccgtgt ttccgctgtg
     4381 gtaccaggcg aacatggtca tcgcgaaaaa gagcgtcggc aacattcacg tcaacgccag
     4441 cggtgattgg ggatttgtga aggatttgac ggtgggaaaa tgaagccgtg attcttggcg
     4501 ccttcagcat tgtctttgcg cctttgcgag aactactacc ttgagaaaat gcatttcacc
     4561 caaggacaaa tctcgtacgg ttcttgcctt cttacgagtt tgctttgaca tttttcaagg
     4621 cagcgcgaac tgcagcgccc gagatgacgc cctcacgtat gaccctgatt gtcgcgccgc
     4681 taacgtccac cacagttgaa ggtcgatcag ttcgcgcttg accggcgtca acgattaagt
     4741 caactgaaga agcaaaataa ttctcaacgt cctgcgccgt ctttgctggc tgctgccctg
     4801 atggattcgc gcttgtagcc gtcaacgtac ctccgcaaat acgaatcaga ccacggacgt
     4861 cttcgtcatc cggcagacgc agtccgacag ttccagttcc tgccatgatc tcctccggaa
     4921 cttcgggagt cgctttgcca atcaacgtca acggcccggg ccaaaacctc tcggctagga
     4981 gatcgaatgt tttcgatcgc tcaatgagca agcgggcgac ctggtcaagt tcgctgatga
     5041 cgacaagaat cggtttgttc tcttccccgc ccttcagcgc tttgattctt tgaaccgcgc
     5101 tgcgattgaa cgggtccgcg cccagaccgt agaacgtgtc ggtgcgaaag gcgatgacgc
     5161 cgccgcgggc gattatatct gcggcttgga ccgtcgctgg cttggaatct tcgaggatca
     5221 ccatctacgt gttcctctgt gttcctctgt gctctctgtg gttaattgat ttcaccacag
     5281 aggacacaga gaacaatcta cgaaatcttc actccgtaac ccaagccgtc gccaaccggc
     5341 aaaacttcgg cgcgcaactg cggatgattg acgaagtgtt gattgaaatc tcgaagtgct
     5401 tctgttgacg gtttctgatc gggagagcga atctcgcccg caacctggcc gccccacaag
     5461 agattgtcaa cgatcacgac accgccggtg cgcagctttg gcaacgacag atcaagatag
     5521 cctcgatatt cttctttcac ggcgtcgata aacacaagat cgaacgtctc gtgaaggtgc
     5581 ggaatgactt cgagcgcgta gcccttttcg attcgcaccc gctcacgcac acgtgcgcgc
     5641 atgaaataac cttccgccgc cttgatcatc tcttcgctgg gatcgattgt gattaccagt
     5701 ccgtcttccg gcatcgcgcg cgcgagatga atcactgaat agccaatcgc catgccgcat
     5761 tccagcacgc gccgcgcttg tatcgctcgc gccgtgattt ccaggaacag cgccacctca
     5821 cgatcggcga tcggcacgcg atgttctgcc gcatagcttt ccatctctgc gagcaggcct
     5881 gtgctcggcg gcaggagttg atccagatac tcagcctgtt cgcgctgaat gatggcgtcg
     5941 atgcgtgctt tcatgatttg ggatccgctc tcgcaggctc atcgaactat tcagcattca
     6001 gtgacttctt ctgaagctcg agcgatgtaa actgttcgcg gtaatcctcc aacgcaccgg
     6061 cccaactctg gcgcagacgc cctgccgatt gtcgctgtcg cttttcgaag agactcgaca
     6121 aagtctctca cctcagcctg cgattcctgc ggaagttcct taactagctg atcgagcggt
     6181 tttatttcag tggccatagt cttttacaaa cgaggcaact caaagcttat ttaaatttac
     6241 agctatttca gtaagcttgc acgaacaaga caacgtgtgc gggcctgccg atcaaagtca
     6301 acggaagaag cgcctctacg cagccgcgag gagttttcta agcttgcgac cattccaacg
     6361 aagaaaagtc gagaaatcgg aaagggcgtc ctgggctttg ccccgagtat caggatcgct
     6421 atcgcgcaga agtccgagta cgaccggcac aacttcatct tcgtcaatgg ctccatgtat
     6481 tctggcaaga tgaccgaggc aggttgccgc aactccgcga acaaacgaaa cgtcgtgccg
     6541 agcgaattta agacattgac cctgcgccca acgtcgatca gattcaaaca tcgcaacact
     6601 gacaagtgtt cgacagatcg cctcgcgatc gccgctggcg agcagcttct ttgctcgagt
     6661 cttatcgatc ggttttactt gttcgtattt catcgtcttc ggtcagtatt ctaccacggc
     6721 tcgttacgag accaaggtca agaagccggc gctgcacgtt ccgctcaagt tcgtcccatt
     6781 ccacgacgaa tccatgaaag actccgggaa gatgctccat cagtacgacg atctcttcgt
     6841 tttctcggtc gacgccgacg cgccgtgacg atgtttcgga tatctggact gaattatcca
     6901 tggcagtctg gccattagca ggctgagcgc taacacgtcc gcgcttcttg cttcgatgtt
     6961 taggattcgg ttcaaagatt acgttagcca tctgggagtt ggatcctaac gcagtcacct
     7021 tcccgtcgca gtttgttgcc gctttcctat ttcacttgtc ttcttttccc tgcgctgccg
     7081 atcccaccgc cacgtaacgc cgaccgagtc ccagctcgcg caatttgtgc tgcagcgact
     7141 gacgatgcat tcccaaaatc gaagccgcgc gcgtgacgtt gccgcccgac tcttccagac
     7201 aacgcgcgat gtagcgtcgc tcgaactcgc gccggtcgtc gcgaaaatcc gaagtgtacg
     7261 gagtcaaaag gttgccgttc gcggcagtct cgacctcagc atcccgcgat ttggtcgcct
     7321 gcaaatcgat ggcgttcagt tcatcgcctt cggacataat cgccgcgcgc tcgatcgcgt
     7381 tgtgcagctc gcggacgttg cccggccacg cgtatcccat caactgtttg agcgcgtcgc
     7441 gagcaatcgg tcgctgtggc aatccgtgat gttcagcgac ctgacggcta aatgcctccg
     7501 ccaaacctgg aatgtcttcg cgtctttggc gcagaggcgc gatgtcaatc gtcacgacgc
     7561 gcaagcgata aaacaaatcc gcgcgaaaat ttcccgtcgt gatttcttct tccaagtccc
     7621 ggtgcgtcgc gctcacgatg cggacgtcga cggggatcga ttcgtcgccg ccgagccgtt
     7681 caattcttcg ttcctcgagc gcgcgcaaga gtttcgcctg cacatttgcg ctcatgtcgc
     7741 ctatctcgtc gagaaagaga gtgccgccgt ttgcctgttc gaattttccc tttcggcgtg
     7801 ctgctgcgcc cgtaaatgcg cccttttcgt ggccgaacag ctcagattcg atcagctcag
     7861 ttggcagcgc cgcgcagttc accgcaacga aagcgccgct gctccgcgcg ctgctgcgtt
     7921 cgtgcagttc gcgcgcaacc aactctttgc cggtccccga ctcgccccgc accaaaacgg
     7981 tcgcgtcggt gtcggcaacc ttctcaatga tcgagcgcac ctcgtgcatc gcggccgaat
     8041 tgccgagcag cgcgccgcgc tgagacgctt cgatctcgat ccggcgtcgc agcgaacgat
     8101 tctcgcgacg aagctggatc gtttcgagag cgttcttgac gacgaggcga agatcgtcaa
     8161 gctcgaaggg ttttgagatg taatcgtacg cgccgctctt caccgcctgt actgccaggc
     8221 gctcagaccc gtgtgcggtg atgatgatga cgagtggcgg ttcggcctgg ctatcttcgc
     8281 cgccgctctg caactctttc agaaaatcga gaccgctgat gccaggcagg ttgacgtcga
     8341 gcagcaacag atcgaacggc tgaccgcgca tggtcgcgcg cgccgcttcg gcgctttccg
     8401 cctcgacaat ctcacagccg aaagtttcga gggcgcgccg aattccgtag cgcgacgcct
     8461 cctcgtcatc gacaatcaac agacgcaagc tccttgttcc catgctggct cctcaagagt
     8521 ttaatacagt tcgaggagtt ttgcttgcgc gttgcgtgcc agatgtcgct gagcgcggct
     8581 taaattcgag ccgatgttat ttcggcgctc gcttggcggc aataacaatg accatagtat
     8641 ctccggaact gccaacgttc agcgttccca ccactgcggg ctcgccttcg cggacactga
     8701 tatcggtcac caggccaatg tgttcataaa tgaaaaccgg cgccaccgcc gtgcctgagg
     8761 aagctatgtt tgtgctggtt tggatgggaa ttcgagagcc gaagtcgaat cgaagcagcc
     8821 gaattacctg gccaccataa gcctcgacca ccttgactgc tccaatcgaa aactcgttga
     8881 agcttggcgt gcttatggtt gatgacgatg gcgccaacaa cggcgctccg acccagttca
     8941 ggtttaggtg cccaccgctc ctcactcgat tgagcagcgt cgcggtcaga ccaaagttct
     9001 tgaatgggag agtgttgcga agttgcttga ccacttgatc gagcgaagct ggaatcttgc
     9061 cttctcccgc ttgttggttc gtcgcgagga ttagatacaa ctcagtgtcc aggttggttt
     9121 catcctcggt cgatgccgcc ggcttcgagt cctgggcc
//
LOCUS       DASZZE010000033         5005 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_180392, whole genome shotgun sequence.
ACCESSION   DASZZE010000033 DASZZE010000000
VERSION     DASZZE010000033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5005)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5005)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5005
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180392"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            321..3809
                     /locus_tag="VHD88_00590"
     CDS             321..3809
                     /locus_tag="VHD88_00590"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HVS20307.1"
                     /translation="MSEKILPSSPVFYDPRGRRWRRVKRTYLALGVVVTALAAIFIAS
                     VLSNPLLPRFNLRPLPSLPHAKDLKPTAPVLPAKNFRDLEAKKAQERLNDESKKTRMP
                     PGQRAALLPIVPPPSNTPLPAPASFSSKSLAIGFYINWDESSLSSLQRNLDHLDWVVP
                     QWVHIVDSKNGSSPIETDIHAPALNLIREKRPQIQILPMVQNLNDEKWEKDVLARAVA
                     DEDSRQRLTSALTQFVEQNKFAGVCMDFEEPTKDTQPNLLRFMQELHAAFQARSWVVV
                     QAVPFDDPDWNYHDYAAATDYLMLMAYDQHYAGKEAGSITGQDWFESNLANRMKDLDA
                     AKTIVAIGNYGYDWTTGGSNAKEVSFQEAVISAHDSQADINFDAATRNPNFEYDEDDN
                     SHHTVWFLDGVTAYNQMRAASGYRPAGFALWRLGSEDPSIWTVFGTDQPNPSPDALRR
                     IAYGYEVDFEGTGELLKVAASPHDGERDLNVDHGTGFITSETYDTKDKIPSSYVIERT
                     GDHPGMIALTFDDGPDPEWTPALLDILKQENVPATFFVIGKNGQAHPDLLRRIVNEGH
                     ELGNHTFTHPNLGQIPGRLTDLELNATQRLIEAVTGRSTVLFRPPYFGDAEADTPEEV
                     EPAIRAEKLGYIMVGLRIDPSDWKPGVTPDEIVQRTVDKAMDTNPETRGQVVLLHDSG
                     GYRQATIEALPRLIHELRARGFQFVLVSKLGGLSRDQVMPLLPPSQSLYTRTDTLAFL
                     FLSTGGWLLQWAFIVGIVLGLGRLAVIGALAFAQWVRSRRRERQHTGERYEPFVSVIV
                     PAYNEERVIEATIRSLLNSDYEKFEIIVVDDGSQDRTSEVVREQFGDVPLVRLFTEPN
                     AGKAGALNFGLRYAKGDVIVALDADTQFPGETIRALARRFVDPQIGAVAGNAKVGNRI
                     NIVTRWQALEYITSQNMDRRAFASLNCITVVPGAVGAWRRELIERCDGFSSDTLAEDQ
                     DLTLRIRKLGYKIGYEEGAIGWTEAPASLKMLARQRFRWAYGTLQCLWKHRNALFRPR
                     YGALGFVAMPNVWIFQILFPLISPIMDLILVYTLISNLLDRLQQPVGYSFTNLRQVLF
                     YYALFLAVDWCAACFAFVLERKERWRLLWWLFLQRFCYRQVMYYVMIKSVATAIRGAV
                     VGWGKLERKATVEAQP"
     gene            3832..>5005
                     /locus_tag="VHD88_00595"
     CDS             3832..>5005
                     /locus_tag="VHD88_00595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20308.1"
                     /translation="MILAPSPKGRREFFSGLFGGGLRFHFMWTQRKKWLVFLALLAFA
                     ATFRIAVAHHWPNDSPDDGRVYAQIARNVLEQHVYSHETEAPYDPSLIRLPGYPLFLA
                     AIYKVFGHGNNGAVRIVQALIDTATCALIALLAFYWQPDEKRKRATALAALALAAVCP
                     FTTIYAATILTEVPTMFLAVAMCVAATVAFRKTFTTEDAEQSKDNTGFKHSLLWWLVS
                     GLLGGLAVLLRPDSGLFAAAIGITLAISGLARFKESLRKTFTSCAIFSLAFVLVLVPW
                     TVRNARVFHLFQPLAPAHGEMPGEFAPRGYSQWLRTWLDDERYIASFLWSLDAEQITL
                     NDVPPQAFDSAEEKDRVAALLDQYNHPQGSATVSPSASPQPVPSPSTTPQSEPNASP"
BASE COUNT         1044 a         1428 c         1435 g         1098 t
ORIGIN      
        1 caacactgga aaggaggtga tccaaaaata tatgagttca aatcacagtg aggtggctga
       61 gacctaacct caggatcgat aatctgcgat tgttcggatt gtcatcctga gaggttttac
      121 tgtgacccct tctttccgga agcagtcacg accacaggtc aatccctaca gttcaccgga
      181 aagccgctcg cgcgaaaacc gtgggcggct tttcttcgaa tgcgtcttcg ttcttgacta
      241 tcaacccgcg cttcgctata gacatcagat aagaaccgca acaccaaact tctctctggt
      301 tgccggaaca gagcatttac gtgtctgaaa agattttgcc gagttcacct gttttctacg
      361 acccgcgcgg ccggcgttgg cggcgtgtga agcgcactta tctggcgctg ggcgttgtgg
      421 tcacggcgct cgccgcgatc tttatcgcca gcgtcctgtc caacccgctg ttgccgagat
      481 ttaatctgcg accgctgccg agtttgccac acgcaaaaga tctcaagccg acggcgccgg
      541 tgctgcctgc gaaaaatttt agagaccttg aagcgaagaa agcccaggaa cgcttgaacg
      601 acgagtcgaa gaagacgcgc atgccgcctg gtcagcgtgc cgctctgctg ccgatcgtgc
      661 caccgccgtc gaacacgcca ttgcccgctc cggccagctt tagttcgaaa tcgttggcga
      721 ttggtttcta tatcaactgg gacgaatcca gtttgtcttc actgcagcgc aatctggatc
      781 atctggactg ggtcgtgccg caatgggtgc acattgtgga ctcgaaaaac ggcagcagcc
      841 cgatcgaaac cgatattcac gcgccggcct tgaacctgat tcgcgagaag cgcccgcaga
      901 ttcaaatcct gccaatggtg caaaatctga atgatgaaaa gtgggaaaag gatgtgctgg
      961 cgcgcgccgt cgcggatgaa gactcaagac agcgattgac ctctgcatta acgcagtttg
     1021 tcgagcaaaa caaattcgcc ggcgtgtgca tggatttcga agagccgaca aaggacacgc
     1081 agccgaatct tcttcgtttc atgcaggagc tgcacgcggc ttttcaggcg cgaagctggg
     1141 tcgtcgtgca ggctgtgccg ttcgatgatc ccgattggaa ctatcacgac tacgcggcag
     1201 ccacggatta cctaatgctg atggcttacg atcagcacta cgcgggcaaa gaggcgggct
     1261 caattacggg acaagattgg ttcgaaagca acctggccaa tcggatgaag gacctcgatg
     1321 cggcgaagac gattgtcgcg atcggcaact atggttacga ctggaccacc ggaggctcaa
     1381 acgccaagga agtcagtttt caggaagcgg ttatctcagc gcatgactcg caagcagaca
     1441 tcaactttga tgcagccaca cgcaatccca actttgaata cgacgaagac gacaactcgc
     1501 atcacacagt ttggtttctc gacggagtca ccgcttacaa ccagatgcgc gcggcgagcg
     1561 gatatcgccc ggcaggtttt gcgttgtggc gacttggctc agaagacccg tcgatctgga
     1621 ccgttttcgg aaccgatcag ccgaatcctt ctcccgacgc gctcagaaga atcgcttacg
     1681 gttacgaagt tgactttgaa ggcacgggcg aattgctgaa agtcgcagcg agtccgcacg
     1741 acggcgagcg cgacctgaat gtcgatcacg gcacgggatt cataacttca gagacatacg
     1801 acacgaaaga caagatccct tcgtcctacg tgatcgagcg caccggcgat catcccggca
     1861 tgatcgcgct gacgtttgac gacggccccg atccggaatg gacgccagcg cttcttgaca
     1921 tactgaagca ggaaaatgtt ccggcaacat tttttgtcat aggcaagaac ggtcaggctc
     1981 atcccgatct gttgcggcgc atcgtcaacg aaggccacga actcggcaat catactttca
     2041 cgcatccgaa cctcggtcag attcccgggc gactgaccga tctcgagctc aacgcaacgc
     2101 agcgtttgat cgaagcggtc accgggcgct cgaccgtgct ctttcgcccg ccgtatttcg
     2161 gagacgccga agccgacacg cccgaagaag tcgagccggc aattcgcgcg gagaagctcg
     2221 gctatatcat ggtgggtttg cgcattgacc cgagcgactg gaagcccggc gttacgcccg
     2281 acgagattgt ccagcgcacg gttgacaagg ccatggacac caatcctgaa acgcgcggcc
     2341 aggttgtgtt gctgcacgat tcgggaggat atcgccaggc gacaatcgaa gctctgccgc
     2401 gcctgattca tgagttgcgc gcgcgcggtt tccagtttgt gttggtttcc aaactcggcg
     2461 gcttgtcgcg cgatcaagtg atgccgctgc tgccgcccag ccagagtctt tacacccgca
     2521 ctgacacgct ggcgtttctt tttctctcga cgggcggctg gcttttgcag tgggcgttca
     2581 tcgtcggaat agttttggga ttgggacggc tggccgtgat tggcgcgctc gcgtttgccc
     2641 agtgggtgcg gtcacgaaga cgcgaacgtc aacacaccgg cgaacgctac gagccgttcg
     2701 tttcggtgat cgtgcccgct tacaacgaag agcgcgtgat cgaagccacc attcgcagcc
     2761 tgctgaattc ggattacgag aagtttgaaa tcatcgtggt tgacgacggc tcgcaagatc
     2821 gcaccagcga agtcgtgcgt gaacaatttg gcgatgtgcc gctggtcagg ctctttaccg
     2881 aaccgaacgc cggaaaggcc ggagcgctta atttcggttt gcgctacgcc aaaggcgatg
     2941 tcatcgtcgc gctcgacgcg gacacgcagt ttcccggcga aacgattcgc gcgttggcgc
     3001 gccgctttgt cgatccgcaa atcggcgcag tcgccggcaa tgcgaaggtc ggcaaccgca
     3061 tcaacatcgt aacgcgttgg caagcgctgg aatacattac ttcgcagaac atggatcgcc
     3121 gcgcgtttgc cagcctcaac tgcatcaccg tggtacccgg cgccgtcggc gcgtggcgac
     3181 gcgagttgat cgaacgctgc gacggcttca gttctgacac tttggcagag gatcaggatt
     3241 tgacgctgcg gatacgcaag ctcggctaca agatcggtta cgaagaagga gcgatcggtt
     3301 ggactgaggc gcctgctagt ttgaagatgc tcgcgcgaca gaggttccgc tgggcctatg
     3361 ggactttgca gtgtctctgg aaacatcgca acgcgctctt ccgcccgcgt tacggcgcgc
     3421 tcgggttcgt cgccatgccc aacgtctgga tatttcagat tctgtttccg ctgatctcgc
     3481 cgatcatgga tttgatactg gtctatacgc tgatctcgaa cttactcgat cgcttgcagc
     3541 aaccagtggg ctattcgttc acgaacctgc gccaggtgct cttttactac gcgctgtttc
     3601 tcgccgtgga ttggtgcgcc gcgtgtttcg ccttcgtgct cgaacgcaaa gaacgctggc
     3661 gcctgttgtg gtggctgttc ctccagcgct tctgctatcg ccaggtgatg tactatgtga
     3721 tgatcaagtc agtcgctacc gcgattcgcg gcgccgtggt tggttggggc aagctggaac
     3781 ggaaagcgac agtggaagcg caaccgtgag gtggccgttt gagatcgttt agtgatcctt
     3841 gctccctctc ccaaagggag aagggagttt ttcagcgggt tgttcggcgg cggacttcgt
     3901 tttcatttca tgtggacgca gcgaaagaag tggcttgttt ttctggcgct gcttgccttt
     3961 gcagcgacgt ttcgcatcgc cgtcgcgcat cactggccaa acgactcgcc tgatgacggt
     4021 cgagtctatg cgcagatcgc gcgcaacgtc cttgagcaac atgtctattc tcacgagacg
     4081 gaagcgcctt acgatccctc gctgatccga cttcccggtt atccgctttt tctcgccgcc
     4141 atctacaaag tcttcggtca cggcaacaac ggcgcggtgc gcatcgtgca agctttgatc
     4201 gatacagcta cgtgcgctct gattgcgctg ctcgcgtttt attggcagcc cgacgaaaag
     4261 cgaaagcgcg caacggcgct cgcggcgctg gctctggccg cggtgtgtcc gtttacgacg
     4321 atctatgcag cgacgatcct gactgaagtt cccacgatgt ttctggcggt ggcgatgtgc
     4381 gtcgcggcca cggttgcgtt tcgaaagaca tttaccacag aggacgcgga gcaatcgaag
     4441 gataatactg gcttcaaaca ttctcttctt tggtggttgg tctctggact actcggcggt
     4501 ttggccgttc tgctgcgtcc cgacagcgga ctattcgccg cggcgattgg aattacgctg
     4561 gccatcagcg gcctcgcgcg attcaaagaa tcactacgca agacgttcac ctcgtgcgcg
     4621 atcttttcgc tcgcatttgt tctcgtgctc gtgccctgga cggttcgcaa cgcgcgggtc
     4681 tttcacttat tccaaccgct ggcgccggcg cacggcgaga tgcccggtga gttcgcgccg
     4741 cgtggttaca gtcaatggct gcgcacctgg ctcgatgacg aacgctacat cgcgtcattc
     4801 ctttggtcac tcgacgctga gcaaataacg ctcaacgacg ttccgccgca ggcattcgat
     4861 tccgcggaag aaaaggatcg cgtcgccgcg ctgctggacc agtacaatca tccgcaggga
     4921 tcagcaaccg tgagcccaag cgcgtcgcca cagcctgtgc cgtcgccatc gacaacgccg
     4981 cagtcggaac cgaacgcgag tccaa
//
LOCUS       DASZZE010000034         2854 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_294503, whole genome shotgun sequence.
ACCESSION   DASZZE010000034 DASZZE010000000
VERSION     DASZZE010000034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2854)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2854)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2854
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_294503"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2259)
                     /locus_tag="VHD88_00600"
     CDS             complement(<1..2259)
                     /locus_tag="VHD88_00600"
                     /inference="COORDINATES: protein motif:HMM:NF024603.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HVS20309.1"
                     /translation="MTLPKRLVSLLLIYCFVITIAPHPRAAVLATNPVSSTLNDSHKS
                     AITRAYDFLSSLFSSTAKTADNDEDAHKEEGLRFRLSEAPEQPEARPVSKVANATPLS
                     DAETEAILKRLPPIKTEASDETEFALREKSLPPPRTGVTILQPFPAPNEMAAPEQTTA
                     GPLEVVRYSPEGDVPIAPNLSVTFSQPMVAVSSQEEAAENVPVKVSPQPPGKWHWIGT
                     KTLLFEPDVRFPMATNYSITVPAGTKSVNGGSLGGAKTWTFTTPPTTVKNFYPTRASV
                     QRRDTLMFAEFDQRIDPAAVLRNIRVEAGRIHVSVRLATREEIEKDDEVRQQVKRAEK
                     DRWLAFRSIDSSGNPQNALPADANINVSVLAGTPSAEGPRLTTEAQSFPFLTFGPLRV
                     TKHECGYNRSCTPDDNWSVEFSNPLDASVFQDSQIKVEPQVEGLKTSIYNNQLYISGT
                     KPGRTTYRVTLDSSIKDKFGQTLGASAPVGFAVGATPPAIFSAGGSLIVLDPAGPASV
                     PVYTINYDRVSARLYSVAPEDWPAWIYYQRNEQGYSDDQVKKQTTPPGRLVYSKTTAV
                     TSKPEEMVETGIDLSAALKDGFGQMILIVEPEPRPTKKNRWKRDSVEAWIQRTNIGLD
                     AFVDRTDLIGWATSLKDGAPLGGAAITLLPYGIAATSGADGMARMALPPQSPKLPPNL
                     IVARAGNDVAILPEQTQYWTSFGSWFRKDTSDTLRWYVFDDRGLYRPGEEVHVKGWIR
                     RVGSNKDGDVGSP"
     gene            2621..>2854
                     /locus_tag="VHD88_00605"
     CDS             2621..>2854
                     /locus_tag="VHD88_00605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20310.1"
                     /translation="MAETDRGPTVADIFRRAQAIRGENPKTSYKEIAAQLAREFSGGP
                     LPPTYNLTIPEQDARAPEEDWTAGLPLVLRGIQQ"
BASE COUNT          571 a          805 c          847 g          631 t
ORIGIN      
        1 cggcgaaccc acatcgccgt ccttgttcga gccgacgcga cgaatccagc ccttgacgtg
       61 cacttcttcg cctggacgat agagaccgcg atcatcgaaa acgtaccagc gcaaagtgtc
      121 gctcgtgtct tttctgaacc aacttccgaa gctggtccaa tactgagtct gctccggcag
      181 aattgcgacg tcatttccgg cacgcgcaac gatcagattc ggcggcagtt tcggcgactg
      241 cggcggcaat gccatgcgcg ccatgccatc cgcgccgctc gtggcagcga tgccgtaagg
      301 caatagcgtg atagcggcgc ctccgagcgg cgcgccgtct ttgagcgaag tggcccagcc
      361 aatcaaatca gtgcgatcga cgaaagcatc aagaccgatg ttcgtgcgct gaatccaggc
      421 ttccacgctg tctcgcttcc aacgattctt cttcgtcgga cgcggctctg gctcgacgat
      481 taagatcatt tggccgaaac catccttcag cgcggccgac aaatcgattc cggtttccac
      541 catctcttcc ggcttcgaag taacagccgt agttttggag tacacgagcc gtccgggcgg
      601 cgtggtctgc ttctttacct ggtcatcgct gtagccttgt tcattgcgct ggtaatagat
      661 ccatgcgggc cagtcttccg gagcgactga gtagagacgc gcactgacgc gatcgtagtt
      721 gatggtgtaa acaggaacac ttgcaggtcc cgcgggatcg agcacgatga gcgaaccgcc
      781 ggcagaaaaa atcgcaggcg gtgtcgcgcc aaccgcgaag cctaccgggg cgctggcgcc
      841 gagcgtctgg ccaaacttgt ccttgatcga tgaatcgagc gttactcgat aggtcgtccg
      901 ccccggcttg gtgccggaga tgtaaagctg gttgttgtag attgaagtct tcagtccctc
      961 aacctgcggc tcgactttga tctgcgaatc ctggaatacg gacgcgtcga gcgggttgct
     1021 gaattccacc gaccagttgt cgtcgggagt gcagcttcgg ttgtagccgc attcgtgctt
     1081 ggtgacgcgc agcgggccga acgtcagaaa gggaaagctt tgtgcttcgg ttgtcaggcg
     1141 cggaccttcg gcggacggtg tgcctgctaa gacggaaaca tttatgttgg catccgctgg
     1201 aagcgcattc tgcggattac ccgaagagtc gatagaccga aacgcaagcc agcgatcctt
     1261 ctcggcgcgc tttacttgct gacgaacctc atcgtccttt tcgatttctt cgcgagtcgc
     1321 gaggcgaact gaaacgtgaa tccttccagc ttcgactctg atgttgcgca agacggctgc
     1381 cggatcgatg cgctgatcga actcggcgaa catcagcgtg tcgcgtcgct gcacgctggc
     1441 tctggtcggg tagaagtttt tcaccgtcgt cggtggcgtt gtgaacgtcc atgtcttcgc
     1501 gccacccagt gagccaccgt tcaccgattt cgttcccgca ggcacagtga tggaatagtt
     1561 tgtcgccatc ggaaagcgga cgtcgggttc gaacagcaga gtcttcgttc cgatccaatg
     1621 ccatttgccc ggcggctgcg gcgagacctt caccggcacg ttctcggcgg cttcttcctg
     1681 cgaacttacc gcgaccatcg gttgtgaaaa cgtcacgctc aagttgggcg cgatcggcac
     1741 gtcgccttcg ggtgagtaac gaactacttc gagtggcccg gcggttgttt gctctggcgc
     1801 agccatctcg ttcggcgcgg ggaatggctg caagatggtt acgccggtgc gcggtggcgg
     1861 cagagacttt tcgcgcagcg caaattctgt ttcgtcgctc gcttcggttt tgattggcgg
     1921 aagtcgtttg agaatcgctt cggtctcggc gtccgaaagc ggcgtggcgt ttgcgacctt
     1981 gctcaccggc cgtgcttccg gctgttccgg cgcttcgctc agacgaaagc gcagaccctc
     2041 ttctttgtgc gcgtcttcat cgttgtcagc cgtctttgcg gttgaggaaa acagcgaaga
     2101 tagaaagtca taggctctgg taatcgcgga cttgtgggaa tcgttgagcg tgctggagac
     2161 tggatttgtc gccagaacgg cagcgcgcgg atgcggcgcg atggtgataa cgaaacaata
     2221 gatcaacagc agggaaacga gacgtttcgg gagagtcata atgcgatgct cctgatttgg
     2281 cggaagcccg accgttagga agggcgcaac ctgtaaacgg aggcaagtgt ttagacgcaa
     2341 tcgagtgcga ttgggttccc cgccgctggg agaaaatcac aagcaagact cccgacgcga
     2401 tgatcctggc tccgtcagga gccatatgtt tatagactca ttgctcgcat catcatatct
     2461 ccacgcgaag tcatgcgccg cgtatggctt cgcgtggaga gggcaaatca tagttctttg
     2521 cgctataaac atcgcgctcc tatcggagcg ctgcaagttt acttccgaat cacgcgcgtg
     2581 taacttatct tcatcatgat cggcggacaa ggagaatgct ttggctgaga ctgatagagg
     2641 cccaaccgtt gccgacatct ttcgccgcgc gcaagcgatt cgcggtgaga acccaaagac
     2701 ctcttacaaa gagatcgcgg cgcaactggc gcgagaattt tccggcgggc cgctgccgcc
     2761 aacctacaac ctgacgattc cggagcagga cgcgcgcgca ccggaagaag attggaccgc
     2821 cggtctgcca ctcgtgctgc gcggcattca acaa
//
LOCUS       DASZZE010000035         2530 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_245350, whole genome shotgun sequence.
ACCESSION   DASZZE010000035 DASZZE010000000
VERSION     DASZZE010000035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2530
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245350"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            126..1067
                     /gene="deoC"
                     /locus_tag="VHD88_00610"
     CDS             126..1067
                     /gene="deoC"
                     /locus_tag="VHD88_00610"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR00126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004139 - deoxyribose-phosphate aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0009264 - deoxyribonucleotide catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HVS20311.1"
                     /translation="MTSASGGTSLTPTDMPYSNNGDFEQLVEQITDVIFARLNGEGAD
                     QAAMCGCTSDCFNRCAERMDRVVDAGASRIGLVLGQTASARDWASLIDHTLLRPDASD
                     RDIKTLCEEAAQYHFASVCVNPTWVRASACHLQGTGVPVCTVIGFPLGATLSDVKAYE
                     ARRSIMDGASEVDMVINVGALKSGDDCLVENDIRSVVQVAHEYGVTCKVIIETALLTD
                     DEKIRACEAAKKAGADFVKTSTGFSKGGATVADIALMRRVVGPELGVKASGGVKSMAD
                     ARAMVEAGATRIGASVGVKIAQEAAGVRSNGGAPARY"
     gene            1185..2162
                     /locus_tag="VHD88_00615"
     CDS             1185..2162
                     /locus_tag="VHD88_00615"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HVS20312.1"
                     /translation="MCALAIAPRAQTPSNQDVEVVRTETDLTNLLFSVTDKNNRYITT
                     LKENDIRVLEDGVPQTLFTFQQETDQPLAIAFLIDVSGSEERTLPREKAAARAFIESV
                     IKSSKDQAAIIPFEGYAHLEQPLTRDVLGIYRALERVDVAVPSYMGSAPPLAGIASSP
                     GTVGPPMEGTTAIWDAIALTCRQVMARSPRPRRRAIILLTDGRDTSSRLLRSTATDQA
                     IESETVIYAIGIGDSHYEGVDKSGLNNVADSTGGRAFFPKKEDDLKAAFAEIERELRS
                     QYLVAYSSTNKKRDGSFRKMTIEITNSELRKEPLKLRYRPGYFAKKSGQ"
     gene            complement(2214..>2530)
                     /locus_tag="VHD88_00620"
     CDS             complement(2214..>2530)
                     /locus_tag="VHD88_00620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20313.1"
                     /translation="TPFVTGWMGENHFAARPVALYGTVLLFSAIACFILARALVSLHD
                     ADSVIATALGRDFKGKVSMVIYLVAIPLAFFKSCLACAFYVLVAVMWLVPDRRIEKTI
                     AK"
BASE COUNT          586 a          739 c          755 g          450 t
ORIGIN      
        1 gaagcggtcg agcgacagta ccagcgctaa ccggggcaga agcccgaccg taagggaggg
       61 cgcatcatgg cgggacagtg gtccgaccgt cagggaggac caacatatcg ccttcacgtg
      121 gtaaaatgac ctcagcgtct ggcggaacga gcctgacgcc aaccgacatg ccttattcaa
      181 acaacggcga tttcgaacaa ctggtcgagc aaatcacgga cgtgatcttt gcgcgtttga
      241 acggtgaagg cgccgatcag gcggcgatgt gcggttgcac ttcggactgt ttcaatcgct
      301 gcgcggaacg aatggatcgc gtcgttgacg cgggcgcatc acgtatcgga ctcgtactgg
      361 gacaaaccgc ttcggcgcgt gattgggcca gcttgatcga tcacacgctc ttaagaccgg
      421 acgcttccga ccgggacatc aagactctct gcgaagaggc cgcgcaatat catttcgctt
      481 ccgtgtgcgt aaacccgacg tgggtgcgcg catcagcgtg tcacttgcag ggcacgggcg
      541 tgccggtgtg taccgtgatc ggatttccgc tgggcgcgac gttgtcggac gtgaaagctt
      601 acgaagcgcg gcgctcgatc atggacggcg cgagcgaagt tgacatggtc atcaacgtcg
      661 gcgcattgaa gagcggcgac gattgcctgg tcgagaatga cattcgctcg gtcgtccagg
      721 tcgcgcacga gtacggcgtg acttgcaagg tgattatcga aaccgcgctg ctgaccgatg
      781 acgaaaaaat tcgcgcgtgc gaagcggcaa aaaaagccgg cgctgatttc gtcaagacgt
      841 ccaccggatt ctcgaaaggc ggcgcgacgg ttgcggacat tgctttgatg cgccgcgtgg
      901 taggccctga actcggcgtc aaggcttcgg gcggcgtgaa gagcatggcc gacgctcgcg
      961 ccatggtcga agccggcgcg acacgcatcg gcgccagcgt cggcgtgaag atcgctcagg
     1021 aagcggcggg cgtacgaagc aacggcggcg caccggcgcg atactaagcc acagcattgg
     1081 ggcagtagcc cgaccgtgag ggagggttcc ttgccgtcat tcctaatcaa ttgattcgcc
     1141 gcctgcatcg ctacttatca tcacttctgt gtctgtcgct ctcgttgtgc gcacttgcaa
     1201 ttgcaccacg agcgcagaca ccgtccaatc aagacgtcga agtagtccgc accgaaacgg
     1261 acctcacgaa tctgctcttc agcgtcaccg acaaaaacaa tcgctacatc actacactca
     1321 aagaaaacga cattcgcgtg ctggaagacg gcgtgccgca gacactcttc acctttcagc
     1381 aagaaaccga tcagccactc gcgatcgctt tcctgattga cgtgagcggc tctgaagaac
     1441 gcacgctgcc gcgagaaaag gcggcggccc gcgccttcat cgaaagcgtg atcaagtcga
     1501 gcaaggacca ggccgccatc attcccttcg aaggttatgc gcatctggaa cagccgctga
     1561 cgcgcgacgt gctcggtatc tatcgcgcgc tcgaacgcgt ggacgtagca gtcccgtcgt
     1621 atatgggttc tgctcctccg cttgccggca ttgcctcgag ccccggcacc gtagggcctc
     1681 cgatggaggg aacaactgcg atctgggatg ccatcgccct gacttgccgg caggtgatgg
     1741 cgcgtagtcc ccgcccgagg cggcgcgcga tcattctctt aaccgacggg cgcgacacca
     1801 gcagccgttt gctgagaagc actgccaccg atcaggcaat cgaatcagag acagtgatct
     1861 acgcgattgg catcggcgac agccattacg agggcgttga caaaagcggg cttaacaacg
     1921 tcgccgatag caccggcgga cgcgcgttct ttccgaagaa ggaagacgac ttgaaagcag
     1981 cgtttgcaga gatcgagcgg gaactccgtt cacaatacct ggtcgcttat tcatcgacga
     2041 ataagaaacg cgacggctcg tttcgcaaga tgaccatcga gatcacgaac tccgaattgc
     2101 gcaaagagcc attgaagctt cgctatcggc cgggatactt cgcgaagaaa tcgggccagt
     2161 agccgacgat cggggcggaa acccgaccgt gagggagggt gccctcacac cgatcacttc
     2221 gcgatcgttt tttcgatccg ccggtcggga accagccaca tcaccgccac tagaacgtag
     2281 aaggcgcatg ctaaacacga cttgaaaaac gcgagcggaa ttgccaccag atagatcacc
     2341 atcgaaacct tgcctttgaa gtctcgtccc aacgcggtcg cgataacgga gtccgcatcg
     2401 tgaagagaaa ccagagcgcg agccaggata aagcaagcga ttgccgaaaa caaaagcacc
     2461 gtaccgtaga gcgcgacggg ccgcgcggcg aaatgattct cgcccatcca gccagtgaca
     2521 aacggcgtca
//
LOCUS       DASZZE010000036         5070 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_180460, whole genome shotgun sequence.
ACCESSION   DASZZE010000036 DASZZE010000000
VERSION     DASZZE010000036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5070
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180460"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..903)
                     /locus_tag="VHD88_00625"
     CDS             complement(<1..903)
                     /locus_tag="VHD88_00625"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HVS20314.1"
                     /translation="MSTAISQPSAHTLSTEEIRAEFPSLQRRHNNHPVAYFDGAGGTQ
                     TPRVVVDAVADYLLNHNANTHWEYPTSHETDAIIESARHAFADFLNASANEVVFGPNT
                     TTMIYHLSRALGRTLGCGDEIVITELEHHANVAPWQALVVERGLTLKIAQMDPETGQL
                     DWNDFERLVTKKTKVVAFGAGCNALGTVNDYRRAVELAHSVDALALVDAVHYAPYFLC
                     DVKETDCDFLTCSAYKFYGPHMSVFYGKKDLLESVDFPKLQPAPDTAPERAEMGTQNH
                     EGIAGAAATVDFYASLSSIDFSLCN"
     gene            1155..1319
                     /locus_tag="VHD88_00630"
     CDS             1155..1319
                     /locus_tag="VHD88_00630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20315.1"
                     /translation="MSDKLQVIEVNMPEKRHVRGVGAKEQRQYEHIKEAAKKSGRYGK
                     RAEEVAARRC"
     gene            1444..1860
                     /locus_tag="VHD88_00635"
     CDS             1444..1860
                     /locus_tag="VHD88_00635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20316.1"
                     /translation="MLRRINLSAALIGLVCFFLPWVQVSCAGAKDTLSGLDLARNGQT
                     LLWLVPILLGGLALLEIFRALKEKLTIYSIVSALCGGATVYLMNRERLRVHDESGLIA
                     AQLTGWFWLGLFSSLAIVISGLLLFVRGKRSNAGEM"
     gene            1924..3468
                     /locus_tag="VHD88_00640"
     CDS             1924..3468
                     /locus_tag="VHD88_00640"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HVS20317.1"
                     /translation="MRSDSGKTTSIWMATSGEIPSDGALAADTSADVCIVGAGIAGMT
                     TAYLLAREGKRVIVLDDGPIGGGMTGRTTAHLVNALDDRFYELERLHGERGAQLTAQS
                     HSAAIDRVEMIVKAEEIECEFERLDGYLFVPPNELKEQLENELKAAHRAGLTDIEMVD
                     RAPIKDFDTGKCLRFPRQAQFHPLKYLAGLAKAIRRDGGRIFTGTHASKIEGGDVARI
                     ETSDGHIVTADAVVVATNTPVNDRFVIHTKQAAYITYVIGARVPHGSVAKALYWDTPN
                     PYHYIRLESIRDDRNAHDVLIVGGEDHKTGQADDANKRFASLERWTRTRFPMIEEIEF
                     QWSGQVMEPVDSLAFIGRNPLDERNVFIATGDSGNGMTHGTIAGIMLTDLIIGRENEW
                     ETLYDPAHKTLRALPKFAQENLNVAAQYADLATAGDVDSADEIKSGEGALVRRGSKKV
                     AVYRDDAGAIHERSAACVHLGCIVNWNSKEKTWDCPCHGSRFDARGKVFQGPANRDLA
                     LVDEPA"
     gene            complement(3470..>5070)
                     /locus_tag="VHD88_00645"
     CDS             complement(3470..>5070)
                     /locus_tag="VHD88_00645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20318.1"
                     /translation="ETWTFEDALVEILRGRLDGVGPTTVNELAASLSLTVNHIEQALA
                     RLEGEGFAMQGKFTPAGPGYAGVPANPASTSPGMPPESQHARTPAYPEWCSRRLLARI
                     HSYTLNRLRKEIEPVSAADFLRFLFVWQKVAPDHRVEGPESVASILDQLEGFEAPAGS
                     WESEILPARLADYDPAWLDALCLSGKLTWLRLSPPRLSPEKTSNSAPVRSTPVVLLSR
                     KNVGMWNKVFPAPPESNGMTLTTNTQAVYEHLKDHGASFFVDIIAGTTLLPSMVEEAL
                     GELVFRGLVSADSFTGLRALLTPLSKSTHREVEKRRRNHKQVYSMHNAGRWVCLRREE
                     RGQAPFLTAPAKGNNGNQSIDRDAIEAVAHKLLARYGVVFRKVLERESINVPWRDLLR
                     VYRRLEARGELRGGRFVGGFSGEQFASTESVQLLRSIRRAAPDETMISISAADPLNLV
                     GVITPGSRLSSVSSNRVPYRDGVPIALLEAKEIRFLVEMNPAEQWKAQNALLRRNVPP
                     KVRAYLSTNGMTVSPLRATASASG"
BASE COUNT         1123 a         1367 c         1503 g         1077 t
ORIGIN      
        1 attacacaga ctgaagtcta tgctacttaa tgacgcgtag aaatcaactg tcgctgccgc
       61 gcccgcgatc ccttcatgat tttgcgtgcc catttcagcc cgttcgggcg cggtgtccgg
      121 cgctggttgc agcttcggga aatcaaccga ttcgagcaaa tctttcttgc cgtaaaagac
      181 gctcatgtgc ggcccgtaaa acttgtaagc cgagcaggtg agaaagtcgc aatccgtttc
      241 ttttacgtcg cacaaaaaat aaggtgcgta gtgcacggcg tcgaccaaag cgagcgcgtc
      301 gactgaatga gcgagttcaa ctgcgcgtcg gtagtcgttc acggtgccga gcgcgttgca
      361 acctgcgccg aacgccacga ctttcgtctt ctttgtaacc aatcgctcaa agtcgttcca
      421 atcaagttgt cctgtttcgg gatccatctg ggctattttc aaggtcaaac cccgttccac
      481 cacgagcgcc tgccacggcg caacgttcgc gtgatgctcg agttcagtga tgacgatctc
      541 gtcaccgcaa ccaagcgtgc ggccgagtgc ccgcgagagg tgatagatca tcgtcgtcgt
      601 gtttggaccg aaaacaactt cattagctga ggcattcaag aagtccgcga aggcgtgccg
      661 cgcggattcg ataatcgcgt cggtctcgtg gctggttgga tactcccagt gcgtattcgc
      721 gttgtgattc agcaagtagt ccgcgactgc atcgacgacc acgcgcggcg tttgcgtgcc
      781 gcccgcgccg tcaaagtacg cgacgggatg attattatga cggcgctgta gagaagggaa
      841 ctcggctcgg atctcttcgg ttgataacgt gtgtgctgac ggctgactaa tcgctgtgct
      901 catgtcaatc atgcgggcaa gatttttcgc gcggtcgcga tgcgccgaag atgctatcag
      961 aaaaaatgcc aaatttcctg tccgcttgcc actaattgtt gtttgttcgt gccgacgcga
     1021 aagcggcact ctgcttggtc aactagctga tgaagcttat gacgcgctgg aatccgggct
     1081 gcaggaaccg gaaaaccgga cgcttgaagt gtcgcggtgt acacgaaggt gacagcgctt
     1141 gttgttgaca gaccgtgagc gataaactgc aagtcataga ggttaatatg ccggaaaaga
     1201 gacacgtgcg tggcgttggc gccaaagagc agcgccaata cgaacacatc aaggaagcag
     1261 cgaagaaatc cggccggtac ggcaagcgcg cagaagaggt cgccgcgcgc aggtgctgaa
     1321 acatcacaag aaggaaggac acaagaaggg tcactgactc gtcagttcca aattagttca
     1381 agaattcgag gagggagttg tcgtggtcgc gcgttggtgt gctcaggcgt gaataagatg
     1441 agaatgttgc gacgcatcaa tctaagtgcc gctctgatcg gtctcgtctg tttctttctg
     1501 ccgtgggtgc aggtcagttg cgccggcgcg aaagacacgc tgagtggatt ggatctggcg
     1561 cgcaacgggc agacgctgct ctggctcgtg ccgatactcc tgggcgggct cgctctattg
     1621 gagatcttcc gcgcgctgaa agagaagctg acgatctatt cgatcgtgag cgcgctctgc
     1681 ggaggggcca cggtctactt gatgaatcgc gaacgattgc gagttcacga cgaatcaggc
     1741 ctgatcgcgg cgcaacttac gggctggttc tggctgggat tattttcgtc gctggccatc
     1801 gtgatctccg ggttattgct cttcgttcgc ggaaagcgat cgaacgcagg agagatgtga
     1861 ttacggaaag gaatcgcgtg acgctatcga cgtgaagccg aaaaagaaag aggacgaaga
     1921 ctgatgagaa gcgattccgg caagactact tcgatctgga tggcaaccag cggagagatt
     1981 ccgtccgacg gcgcgctcgc cgcagacacg agcgcggatg tatgcattgt cggcgccgga
     2041 attgcgggga tgacgacggc ttacctgctt gctcgtgaag gtaaacgagt catcgttctt
     2101 gacgacgggc caatcggtgg cggcatgacc gggcggacga cggcgcacct ggtcaacgcc
     2161 ctcgatgacc gcttctacga gcttgagcgt ttgcacggag agcgcggtgc gcaactgacc
     2221 gcgcagagtc actcggctgc gatcgatcgc gttgagatga ttgttaaagc agaagaaatc
     2281 gaatgtgaat tcgagcgact cgatggatat cttttcgttc cacccaatga attaaaagag
     2341 caacttgaaa atgagttgaa ggcggctcat cgcgccggac tgacagacat cgagatggtt
     2401 gatcgagcgc ctatcaaaga ctttgacacc ggcaagtgtc tgcgctttcc gcgacaggcg
     2461 cagtttcatc ctttgaagta tctggcagga cttgcaaagg caatccgacg agatggcggc
     2521 cgaattttta ccggaacgca cgcgagcaag atcgaaggcg gggacgttgc gcgcatcgag
     2581 accagcgacg gtcacatcgt cactgccgat gcggtggtgg ttgcgacaaa cactcctgtt
     2641 aacgatcgct ttgtgattca cactaagcaa gccgcctata taacttacgt aatcggcgcg
     2701 cgggtgccgc acggctctgt ggcgaaggct ctctactggg acacgcccaa tccttatcac
     2761 tacattcggc ttgagagtat tcgtgatgat cgaaacgccc atgacgtttt gatcgtcggg
     2821 ggcgaggatc acaaaacagg acaggcagat gacgccaaca agcgattcgc gtcgcttgaa
     2881 agatggacac gaactcgttt tccgatgatc gaagagattg agtttcaatg gtcggggcag
     2941 gtaatggagc cggtggatag tctggccttc atcgggcgaa atccgctgga cgaacgcaac
     3001 gtctttattg ctaccggcga ttccggcaac ggcatgacgc atggaacaat agcgggaatt
     3061 atgctcactg atctgatcat cggacgagaa aacgaatggg agactctgta cgatccagcc
     3121 cacaagacac tgcgggcctt gcctaagttc gctcaggaga atctcaacgt tgccgctcag
     3181 tacgcggatt tggcgacagc cggcgatgtg gattccgcgg atgagatcaa gtcaggcgaa
     3241 ggcgcgctcg ttcgtcgcgg atcaaagaaa gtcgcggttt atcgagacga tgccggcgcg
     3301 attcacgaac gctcggcagc gtgtgttcat ctgggctgca ttgttaactg gaattcaaaa
     3361 gaaaagactt gggattgtcc ctgccacggc tcgcgcttcg acgctcgcgg caaggtgttt
     3421 caggggccgg ctaatcgcga tctcgccctt gtggatgagc cggcctagcc tagccagacg
     3481 ccgacgccgt cgctcttagc ggcgagacag tcatgccgtt tgtgctcaag taagcacgca
     3541 ctttcggcgg gacgttccga cgcagcaggg cgttctgcgc cttccattgc tcggccgggt
     3601 tcatctcgac aaggaagcgg atctctttcg cttccagtaa ggcgatcgga actccatcgc
     3661 gatagggcac tcggtttgac gacacagacg aaagtcgtga accgggagtg attactccaa
     3721 ccaggttgag cgggtcggca gcgctaatcg aaatcatcgt ttcatccggc gccgcgcgac
     3781 gaatcgatcg gagaagttgc acggattccg ttgatgcaaa ctgctcacct gaaaatccgc
     3841 cgacaaaacg tccgccgcga agctctccgc gcgcttccag acgtcgataa accctcagca
     3901 gatcgcgcca cggcacgttg atcgattcgc gttcgagaac cttgcgaaac acgactccgt
     3961 aacgtgcgag cagcttgtgc gccaccgctt cgatcgcgtc ccgatcgatc gattgattgc
     4021 cgttgttgcc tttggcaggc gcagtaagga agggggcttg cccccgctcc tctcgtcgca
     4081 agcaaaccca tcgcccggca ttgtgcatgc tgtaaacctg tttgtgattt cgtcgacgct
     4141 tctcgacctc tcgatgcgtg ctcttactta gcggtgtcag caacgcgcgc agacccgtga
     4201 aactgtccgc gctaaccagg ccgcgaaaca cgagttcacc cagcgcttcc tcaaccatgc
     4261 ttggcaacaa ggtcgtcccg gcgatgatat ccacaaagaa cgacgcaccg tgatctttga
     4321 gatgttcgta aacggcttgc gtgttggtcg ttagcgtcat gccgtttgat tccggagggg
     4381 cagggaagac cttattccac attccaacat tttttcggct tagcaaaact accggcgtgc
     4441 tgcgcacagg cgccgagttg ctcgtctttt ccggcgacag acgcggtggc gagagacgca
     4501 gccaggtgag tttgccggaa agacagagcg catccagcca cgcaggatcg taatcggcga
     4561 gcctcgccgg caggatttcg gattcccacg aacccgccgg cgcttcaaag ccttcgagct
     4621 gatccaggat tgaagcgacg ctttcgggtc cctcgacacg atgatcgggc gcgactttct
     4681 gccaaacgaa caggaagcgc aagaagtcgg cggccgaaac cggttcgatc tctttgcgca
     4741 aacgattgag cgtgtagctg tgaatgcgcg cgagcagacg gcgcgagcac cactctgggt
     4801 acgcaggcgt cctcgcgtgc tgactttccg gtggcattcc tggagatgtc gatgcagggt
     4861 tggcggggac gcctgcgtac ccagggcctg ccggtgtaaa cttgccctgc atcgcaaagc
     4921 cttcgccttc aagccgcgcc agggcttgct cgatgtggtt gacggtaagc gaaagcgaag
     4981 cggccagttc attgacggtc gtgggcccaa ctccatcgag tcgcccgcgc agaatctcaa
     5041 ccagcgcatc ttcgaacgtc catgtttcgt
//
LOCUS       DASZZE010000037         3950 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_115497, whole genome shotgun sequence.
ACCESSION   DASZZE010000037 DASZZE010000000
VERSION     DASZZE010000037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3950)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3950)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3950
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_115497"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..912
                     /locus_tag="VHD88_00650"
     CDS             <1..912
                     /locus_tag="VHD88_00650"
                     /inference="COORDINATES: protein motif:HMM:NF016800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HVS20319.1"
                     /translation="IYRVEWIAVLEVPRGRLLPGATPEERLGIQRWTHGRDWRTTGFY
                     DHWTTYAEALQLVASLTLGLFVALPRKRTRNGALLALAIVSMCGALVLTVTRASLLGL
                     VVSAALIAAIGLSRRALFVIGACALPLVFVGLFVLHQKRNVGFFDQKDDSIRWRETVQ
                     REGFQLLVSNPRHLLVGVGMDSIKAHWRAWGLFENGRIPMGHMHSDYLQIALERGVPT
                     LIVWLILLGVYARTLWRLRRRVPGENWIERGIVFGALGGLIGFALSGFVHYNWGDSEV
                     VMIFYLIMGLSLVVERRVREIRGAQAP"
     gene            complement(1096..1785)
                     /locus_tag="VHD88_00655"
     CDS             complement(1096..1785)
                     /locus_tag="VHD88_00655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20320.1"
                     /translation="MSAARSNLQKIVSQLAARYGKPESPITTDPFELILLENVAYLVS
                     DERRQAAFKMLRKHAGTKPHEILAASHDDILQGTKLGGMHPEQRVSGLREIALIAMND
                     FGGDLKQALKLPLPKATQALRKFPSIGEPSAEKILLFTRSYPVLGLDSNGLRVLVRLG
                     FGEEKKSYAATYRSVQEAIQSQLREDYDWLISAHILLRQHGKEMCKTNAPLCEKCPVR
                     KSCVYFRTQQI"
     gene            complement(1801..2205)
                     /locus_tag="VHD88_00660"
     CDS             complement(1801..2205)
                     /locus_tag="VHD88_00660"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HVS20321.1"
                     /translation="MSTPIPIGPTLSRIGQIFVNVHDLDRAIAFYRDTLGMKFLFQAP
                     PNMAFFDCDGIRLMLGLADRPELDHPASIIYYKVDDIEKFYEIFKARGLEFVVKPHLV
                     APMPTYDLWLADFRDSEGNLLALMSEVPRQVA"
     gene            2292..2837
                     /locus_tag="VHD88_00665"
     CDS             2292..2837
                     /locus_tag="VHD88_00665"
                     /inference="COORDINATES: protein motif:HMM:NF016290.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptE family protein"
                     /protein_id="HVS20322.1"
                     /translation="MKRLVQTSALAALLLFVFGFGECYKPVTKSQMPSHIKTVAVPAF
                     QNNALRFKIEHRFTEAVMNELIHRGHGLRVQSEREGADAVIDGVVKSFGFSGVLLDDK
                     GRARVFEVTITAAVTVRDQHENRVLYDNQNFVFRGEFEFANDPRNFFNEEDPAVQRMA
                     RSFAESIVSTLINGFGVKEDK"
     gene            2847..3848
                     /gene="holA"
                     /locus_tag="VHD88_00670"
     CDS             2847..3848
                     /gene="holA"
                     /locus_tag="VHD88_00670"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR01128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HVS20323.1"
                     /translation="MPVRPRKDLTQSLKQGKIESVYFLFGPETQLRDEAARAIADEAL
                     RDTLLREFNEASFSLANGDPSSAIAAAEQLPMMSSRRVVRITNFTKLDEAGEAILQQY
                     LDRPVESTVMLFIADDIDKRKKLAKTLMSRAAFEFAPLSNAELESWARGHLKSLQADA
                     DANVLQTIVELVGQDVRRLSNELNKLSAAALPSGKITKELVEALVSRSRELMNYDLTD
                     QMILRNRLRALKTLKHLLDDGAQPVMLIGLLGSTYRRMALAQTLLSQGVSSREIFRQV
                     PMPPFKQQSFLATLSRTDSKTLALNIARIAAADLGIKTSKATPRMQVEMLVCELTAS"
BASE COUNT          827 a         1057 c         1137 g          929 t
ORIGIN      
        1 atctatcgcg tcgagtggat cgccgtgctt gaggtgccgc gcgggcgttt gcttcccggc
       61 gcgacgcccg aagagcgact gggaattcag cgctggacgc atggacgaga ctggcgcacc
      121 accggctttt acgatcactg gacgacatac gctgaggctc tgcaactggt cgcgtcgctg
      181 acgcttggcc tcttcgttgc gttgccgcgc aagcgcacga gaaacggtgc gctgttagct
      241 ctggcgatcg tttccatgtg tggtgcgctt gttctgacgg tgacgcgcgc ctcgttgctg
      301 ggccttgtag tttccgcggc gttgattgcc gcaattggtc tcagccgccg cgcgctgttc
      361 gtgattggtg cgtgcgcgtt gccgttggtt tttgtcggtc tgtttgtgtt gcatcagaaa
      421 cgaaacgtcg gattcttcga tcagaaagac gattcgattc gctggcgcga gaccgtgcag
      481 cgagagggtt tccaattgtt agtgagcaat ccgcggcacc tgttggttgg cgtcgggatg
      541 gattcgatca aagcgcattg gcgcgcgtgg ggattgttcg aaaacggccg cattcccatg
      601 ggccacatgc attcggacta tttgcaaatc gcgctggagc gcggcgtgcc gacgctgatt
      661 gtctggttga ttctgttggg agtttacgcg cgtacgttat ggcgattgcg gcgtcgcgtg
      721 cctggcgaga attggatcga gcgcggaatt gtattcggag cgctcggcgg ccttatcggc
      781 ttcgcgctga gtggattcgt tcattataac tggggcgatt cggaagtagt gatgattttt
      841 tatttgatta tggggttgag tctggtggta gagaggcgag tgcgggaaat ccgcggagca
      901 caagcgccgt aggcgcggaa tatttatagt tcttcggtcc taatcatttt ggttctctct
      961 gggcaagagc gacgaggcgt cgctcttgcc cagagttgtc ttcaacaagt cctcgtgtct
     1021 ataaacattt cgccgctacg cggctgcccc tgcgaacagg tgccgcttat ttgttccaat
     1081 acggtgatca cgatcttata tttgctgcgt ccgaaaatag acgcaactct tcctcaccgg
     1141 acacttctcg cacaacggcg cattcgtctt gcacatttcc tttccatgtt gacgcaaaag
     1201 aatgtgcgcg cttattaacc agtcgtaatc ttccctgagt tgactctgga tcgcttcctg
     1261 aactgaacga tacgttgcgg cgtaactctt cttctcttcg ccaaagccca aacgcacgag
     1321 cacgcgcaag ccgttcgaat ccaaaccgag aaccggatac gagcgcgtga acagcagaat
     1381 tttttccgcg ctcggttcgc caatgctcgg aaactttcgt aatgcctgcg tggcttttgg
     1441 tagcgggagc ttcaaggctt gtttcagatc gccgccaaaa tcgttcatcg caatcagagc
     1501 gatctcgcga aggccactga cgcgctgctc gggatgcatg cctccaagtt tggtcccttg
     1561 cagaatgtcg tcgtgcgaag cagcgagaat ctcatgcggc ttggtgcctg cgtgtttgcg
     1621 cagcatcttg aaggctgcct ggcgcctctc gtcgctgacc agatacgcga cgttttccaa
     1681 aaggatcagt tcaaacgggt cggtcgtgat tggtgattca ggcttgccgt agcgcgccgc
     1741 gagttgggaa acgattttct gtaagttgga tcgggccgcg gacatgattc tgtgtcaggc
     1801 tcacgcgact tgtcgcggca cttcactcat caacgccagc agattgccct ctgagtcgcg
     1861 aaagtctgcg agccaaaggt cataggtcgg catgggcgca accaaatgcg gtttcaccac
     1921 gaactccaag ccgcgcgctt tgaagatttc gtaaaacttc tcgatgtcgt caactttgta
     1981 gtagatgatc gaagcgggat gatcgagttc cggcctgtcc gccaagccca acatcaagcg
     2041 gatgccatca caatcaaaga aggccatgtt tggcggcgct tgaaacagaa acttcattcc
     2101 caacgtgtcg cgataaaaag caatcgcgcg atcaaggtca tgcacgttga cgaagatctg
     2161 tccgattcgc gacagggtcg ggccaattgg tattggagtg ctcatccggt ctcctaattg
     2221 tggccgagtc acttccgtat agcacgctct tgacgtatta tcaacaatcc ttcaggaaga
     2281 gtattgggtt gatgaaaaga ctcgttcaga catccgcgtt ggcagctttg ttgctgttcg
     2341 ttttcggttt cggtgaatgc tacaagccgg tgacgaagag ccagatgccg tcgcatatca
     2401 agaccgtcgc ggtgcccgcg tttcagaaca acgcgctgcg attcaagatc gagcatcgct
     2461 tcactgaagc tgtgatgaac gagttgattc atcgcggtca cggcttgcgc gtgcagagcg
     2521 agcgcgaagg cgcggacgcg gtgattgacg gcgtcgtcaa gagctttggt ttttccggag
     2581 tgctcctgga cgacaaaggc cgtgcccgag tttttgaagt cacgatcacc gccgccgtca
     2641 ccgtgcgcga tcagcacgag aatcgcgtgc tctacgacaa tcagaacttc gtctttcgcg
     2701 gcgagttcga attcgccaac gacccgcgca acttcttcaa cgaagaggac cctgcggtgc
     2761 aacgcatggc acgcagcttt gccgaatcga tcgtctcgac gctgattaac ggattcggag
     2821 tgaaggaaga caagtagatt ccgtcgatgc ccgttcgccc acgaaaagat ctcacgcaat
     2881 cgctgaagca gggaaagatc gaatcagttt attttttgtt cggtccggaa actcaactcc
     2941 gcgacgaagc tgctcgcgct attgccgacg aagccttgcg cgacactctg ctgcgcgaat
     3001 tcaacgaggc gtcgttcagc ttagccaacg gtgatccgtc gtcggctatt gccgccgccg
     3061 aacaactgcc gatgatgtcg tctcgccgcg ttgtgcgcat aacgaatttc acgaaactgg
     3121 acgaagccgg cgaagctatt ctgcaacagt acctcgaccg cccagtcgaa tcgaccgtga
     3181 tgcttttcat cgccgatgac atcgacaagc gaaaaaagct ggcaaagacg ttgatgtcgc
     3241 gagcggcttt tgaatttgcg ccgctcagca acgctgagct cgaatcgtgg gctcgcgggc
     3301 atctgaaaag cctgcaagcg gatgccgacg cgaacgtgtt gcagacgatc gtcgaactgg
     3361 ttggccagga cgtgcgcagg ctttccaatg aactgaacaa gctttcagcg gcagcactgc
     3421 cgtcaggcaa gatcacgaaa gagttggtcg aggcgctggt cagtcgatcg cgggagttga
     3481 tgaactacga tctgaccgat cagatgattc ttcgcaatcg gctgcgcgcg ctgaagacat
     3541 taaagcatct actcgacgac ggcgcgcagc cggtgatgct aattggcctg ctcggaagta
     3601 cttatcggcg catggctctg gcgcagacgc ttttgtcgca gggcgtgtcg tcaagagaaa
     3661 tctttcgcca ggtgccaatg ccgccgttca agcagcagag ttttctggcg actttgagcc
     3721 gcaccgacag caagacgctg gcgctcaaca tcgcgcgcat cgccgcagcg gacctcggaa
     3781 tcaagacttc gaaagcgacg ccgcgcatgc aagttgagat gctggtgtgc gagttgaccg
     3841 caagctaatc cgtctggaac tccagcggct tcaaatcagg ttcgacccat cccactttcg
     3901 cttccggtga attcaacagc tccttcgaat aataggcagc gatcaattcc
//
LOCUS       DASZZE010000038         6772 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_196951, whole genome shotgun sequence.
ACCESSION   DASZZE010000038 DASZZE010000000
VERSION     DASZZE010000038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6772)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6772)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6772
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_196951"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..757)
                     /locus_tag="VHD88_00675"
     CDS             complement(<1..757)
                     /locus_tag="VHD88_00675"
                     /inference="COORDINATES: protein motif:HMM:NF013741.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNNM domain-containing protein"
                     /protein_id="HVS20324.1"
                     /translation="MDDPASNILALLAGDAQPSTTLIKVAAKLLAVLFFVVANAFFVG
                     SEFALVSVRRTRLEARAAAGSRRARAALRLIGDPTSFISATQLGITIASLALGWIGEP
                     VVAGLLQPIASQIASAGRAGYIAHLFAIIIAFAAITFLHIVLGELMPKMFALERAEGL
                     ALLAARPLELFAKVFSAPLWIFNRTGATLGRLLGLKSSLQHAAVYSEAELRQLIDISR
                     ESGHLRAEERRLIHRVFEFSDTLVREAMVPRTEI"
     gene            complement(875..1447)
                     /locus_tag="VHD88_00680"
     CDS             complement(875..1447)
                     /locus_tag="VHD88_00680"
                     /inference="COORDINATES: protein motif:HMM:NF044704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CarD family transcriptional regulator"
                     /protein_id="HVS20325.1"
                     /translation="MLVKLVGGDKVGFKVGQKVVYPNHGIGTIEQIEQKQIGAVALPF
                     YTLRLAATNSLVLVPVSNASEVGLRRPISSGECEILFKALGNDFATPAPDWKDRFKDF
                     SEKMRTGNIFEVAEVLKHLNYLSHIKPLSFREQRMFERSRYLVVSELAAVCRQPECNI
                     EPRVDQALGQACTRHDHQPLTRARAAAASN"
     gene            complement(1640..3196)
                     /locus_tag="VHD88_00685"
     CDS             complement(1640..3196)
                     /locus_tag="VHD88_00685"
                     /inference="COORDINATES: protein motif:HMM:NF016190.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIM44-like domain-containing protein"
                     /protein_id="HVS20326.1"
                     /translation="MNHRRFPISNFRLRVRVVIAGVVLFGVALFETEAVARVGGGQSY
                     GGGGGHGGGGGGAGALVYLLIRFLLWLTIEHPVIGIPVDIIVIALVIYWFTRPSKKTL
                     AATSSPILAAASGGAAPGGQQDVQRSFNQLRRFDPNFSEIIFTDFCYALYGRAHDARG
                     HDAKALDLLSPYLSDQARASLAQLNPPTLKAVEGIIVGAMEVIDVRGLATPTVGISVG
                     FEANYTEFTPREGDPRGEMSYYVRERWELERKRDVLSPPPEQATALHCPRCGAPLQKD
                     TAGACAFCGTKIDSGEFQWYVRSITPLSREAKGPLLTSDVPEVGTDYPTVTQPNFPAV
                     RAAFEQNNPSFSWADFQARARLIFNELQEAWSTLNWERARPHETDNIFQMHRYWIDAY
                     KRQGLRNALDQCQITAMQSVKIKEDAFYHAITLRIFAQGYDYTIANNGHVVAGSNKNL
                     RRWSEYWTFIRNSKAKPAPARADLNCPNCGAPLKVNATGICEFCKGKITSGEFDWVLS
                     KIEQDESYAG"
     gene            complement(3193..3819)
                     /locus_tag="VHD88_00690"
     CDS             complement(3193..3819)
                     /locus_tag="VHD88_00690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20327.1"
                     /translation="MSHAKFDQAGDAIAQAVRDIEKTTDAEIVIVVRGRSGSYRHADY
                     LCGALLAFIGLLFVLLSPFDFHTYWVPVDVALLFVIGAFVSSRSDVIRRLLTTDASRV
                     KAARAGATAMFYEAGIANTHAENGMLIYLSLLERQMEVIADRAILKAVPALKWNHSLF
                     ELKQIAQKPEPDRLIKALRDLGALLAEHLPATGENPNELADGPRIELK"
     gene            complement(3920..4267)
                     /locus_tag="VHD88_00695"
     CDS             complement(3920..4267)
                     /locus_tag="VHD88_00695"
                     /inference="COORDINATES: protein motif:HMM:TIGR00377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HVS20328.1"
                     /translation="MAELDIKQRQAGDVAVLDLNGEVRIGDSSTALRGAIRGLVAGGN
                     KKLLLNLAGVRYIDSSGIGELIANYTTVGRGGGQLKLLNLTDKVQDLLVITKLLTVFD
                     VYDNESEALSSFK"
     gene            complement(4344..4691)
                     /locus_tag="VHD88_00700"
     CDS             complement(4344..4691)
                     /locus_tag="VHD88_00700"
                     /inference="COORDINATES: protein motif:HMM:TIGR00377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HVS20329.1"
                     /translation="MAELNIRERQAGDVTVLDMDGRITIGEGSVALRSAVRRLLEEGK
                     KNILLNLAGVGYIDSSGIGELVSSYTAINKEGGQLKLLSLTEKLRDLLTITKLLTVFD
                     AYDTEAEAFSNFK"
     gene            complement(4723..5136)
                     /locus_tag="VHD88_00705"
     CDS             complement(4723..5136)
                     /locus_tag="VHD88_00705"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: protein motif:HMM:NF024970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HVS20330.1"
                     /translation="MTEQTTRLVLPSHIEAVADAAAAASRFAQSCGVDESIAFGIDMA
                     VREAVTNAVVHGNQEDEAKSVEVTFSCRQHALEIEINDQGEGFDPVDVPDPTDAANIL
                     KTSGRGIFLIRNFMDEVQWSARPEGGTTLRLVKKF"
     gene            5308..6621
                     /gene="aroA"
                     /locus_tag="VHD88_00710"
     CDS             5308..6621
                     /gene="aroA"
                     /locus_tag="VHD88_00710"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: protein motif:HMM:NF012497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003866 - 3-phosphoshikimate
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HVS20331.1"
                     /translation="MIIQPAKRIRGRLVMPGDKSISHRAAMIAALAEGTSRIKNLSTS
                     ADCAATLLGLQQLGVGIDHDGSDVLIHGVGANGLREPREPLDCGNSGTTMRLLAGILA
                     GQNFESTLTGDESLCSRPMRRIVEPLEMMGAHVSSRDGRAPLMIEGRRPLHAISYELL
                     VASAQVKSCILLAGLSAEGQTEVMEGEATRDHTERMLSWFGVSVETRVGEREGSRVAA
                     IEGPARFNARDISIPGDLSSAAYFVAAAALLPGSKLAIENVGLNATRDQFLSTLQSLG
                     ANISRGDPREDCNEPSGTIEVRSETMSLELTELTRRIRGSVISQLIDELPLLAVVGSQ
                     VEGGIEIRDAAELRVKESDRIAKTAQNLRAMGAAVEEFDDGLRVSGPTQLHGAAIDPR
                     GDHRIAMAFSVAGLIADGETEIQDAGCVAVSFPEFFNLLDAVVER"
BASE COUNT         1472 a         1936 c         1915 g         1449 t
ORIGIN      
        1 caatctctgt ccgcggcacc atggcctcgc gcaccagcgt gtcggaaaac tcgaacacgc
       61 ggtgaatcag ccggcgttct tcagcgcgca ggtgaccgct ctcccgagaa atatcgatca
      121 actgccgcag ctcggcttcg ctgtaaaccg cggcgtgttg gagagacgat ttcaagccga
      181 gcaagcgacc taacgtcgcg ccggtgcgat taaagatcca cagcggcgca ctgaagactt
      241 tcgcgaacag ttcgagcggc cgggcagcga gcagcgccaa tccttcagcg cgctcgagcg
      301 caaacatctt gggcatcaat tcgccgagca cgatgtgcag gaaggtgatc gccgcgaacg
      361 cgatgatgat ggcgaacaga tgcgcgatat aacccgcgcg tcccgctgac gcaatctgag
      421 atgcgatcgg ctgcaacagg ccggccacca ccggctctcc gatccagccg agcgccaggg
      481 aagcgatcgt gattccgagt tgcgttgccg aaatgaaaga ggtcggatcg ccgatcaagc
      541 gcagcgccgc gcgcgcgcgc cggctgcccg cggcggcgcg agcttcgagc cgcgtgcggc
      601 gtactgagac aagcgcaaac tccgagccga caaagaatgc gttggcaacg acgaagaaca
      661 gcaccgccaa aagttttgcc gcgactttga tcagagtagt ggacggctga gcgtcgccag
      721 ccaaaagggc caggatatta ctagcagggt catccattgc gtgttcgaac gaaaagcgag
      781 agaagcctgc gcgacatcat aacatggcgt gcacgtgtcg tgcagcgtca tcaaaacgcg
      841 ctgaatttag cgaaaaggat tgagtcaacg gtgttcagtt gctggcagcg gcggctctgg
      901 cccgcgtgag cggttggtgg tcgtgccggg tgcaagcttg ccccaacgct tggtcgacgc
      961 ggggttcgat gttgcattca ggctggcggc aaacggcggc taattccgag actaccaggt
     1021 agcgtgatcg ctcaaacatc cgttgctcgc ggaatgaaag cggtttgatg tggctgagat
     1081 agttgagatg tttcaggacc tcggcaactt caaagatgtt gccggtgcgc atcttttcag
     1141 aaaaatcttt gaaacgatct ttccagtcgg gcgcgggcgt ggcaaagtca ttgcccaaag
     1201 ccttgaaaag tatttcacat tcgcccgaag aaatcggccg gcgcaagcca acttcggaag
     1261 cgttcgaaac cggaaccagg accagcgagt tagtcgcggc cagtcggagc gtgtagaacg
     1321 gaagcgctac cgcgccgatt tgcttctgtt cgatttgttc gattgtacca atgccgtgat
     1381 ttgggtaaac aaccttctgg ccgactttga agcccacctt gtcacctccg actagtttta
     1441 cgagcacctg gcaagtcgca tcgcgcggct tatggacaaa aacatttacg cgagattggt
     1501 gttcgggttt gtccctgaat ctgaatcgag tctagcaagc ctgatcacaa agcgcaagct
     1561 tccgaaatgc gatgagtaat ttagcagcaa acactgggcc acacacgctc gtgcgttcgc
     1621 aaaacttgct tcggtattac tagcccgcgt agctttcatc ttgttcgatc ttcgagagca
     1681 cccaatcgaa ctcgccggaa gtgatcttgc ctttgcagaa ttcgcagatt cccgtggcgt
     1741 tcactttgag tggagcgccg cagttcgggc aattcaaatc agcgcgagcc ggtgcgggct
     1801 tggctttgct gttgcgaatg aacgtccagt attcgctcca acgccgcaga ttcttgttcg
     1861 aaccggcaac tacgtgaccg ttattggcga tggtgtaatc atagccctgg gcaaagatgc
     1921 gcagcgtgat cgcgtgatag aaagcgtctt ctttgatctt cacggactgc atcgcagtaa
     1981 tctgacattg gtcgagcgcg ttgcgcaatc cctgtcgttt gtaggcgtcg atccagtagc
     2041 gatgcatctg aaaaatgttg tccgtttcgt gtggccgcgc gcgctcccag ttgagcgttg
     2101 accacgcttc ctgtagctca ttgaagatca ggcgagcgcg cgcctgaaaa tcagcccacg
     2161 aaaaagacgg attattttgt tcgaaggctg cgcgcacggc cgggaaattc ggctgcgtca
     2221 ccgtcggata atctgtgccc acctccggca catcggaggt caacaacggg cctttcgctt
     2281 cgcgactcag cggcgtgatg ctgcggacgt accattgaaa ttcaccacta tcgatcttgg
     2341 tgccacagaa cgcgcaggca ccggcagtgt ctttctgcaa aggcgcgcca cagcgcggac
     2401 agtgcaaagc cgtcgcttgt tccggcggcg gcgatagcac gtcgcgcttg cgttctaact
     2461 cccaacgctc ccgcacgtag tagctcatct cgccgcgcgg gtcgccttca cgtggagtga
     2521 attccgtgta attcgcttcg aacccaacgc tgatcccgac tgtcggagtc gcgagcccgc
     2581 gcacgtctat gacttccatc gcgccgacga tgattccttc gacggctttc agagttggcg
     2641 gattcaattg cgcgagcgac gctcgcgcct gatcgctcag atacggcgag agcagatcga
     2701 gcgccttagc gtcatgaccg cgcgcgtcgt gcgctcgtcc gtacagcgcg tagcagaagt
     2761 ccgtgaaaat gatttcggaa aaattcggat cgaaacggcg cagttgattg aacgagcgct
     2821 ggacatcctg ctgtcctccc ggcgcggcgc cgccgctcgc cgcggcgaga atcggcgaag
     2881 aggtagcggc caacgtcttc ttcgaaggtc gcgtgaacca atagatcacc agcgcgatga
     2941 cgatgatatc gacgggaatg ccgatgaccg gatgttcgat cgtcagccaa agcagaaacc
     3001 ttattagcaa atagacgagc gcgccggcgc cgccacctcc gccgccatga ccgcctccgc
     3061 cgccatacga ttgcccgcca ccgacgcgtg ccaccgcttc agtttcgaag agcgcgacgc
     3121 cgaaaagaac cacgccggcg atcacgacgc ggactctcaa tcggaaattg gaaattggaa
     3181 atcggcgatg gttcatttca attcaatgcg cggcccatcg gccagctcgt ttggattctc
     3241 gcccgtcgcc ggcaagtgtt ctgcaagcaa cgctcccaaa tcgcgcagtg ctttgatcag
     3301 ccgatccggc tcgggctttt gcgcgatctg tttaagctcg aacagcgaat ggttccattt
     3361 gagcgccggc acggctttca gaattgcacg atcggcaatc acttccatct gccgctctaa
     3421 cagggagaga tagatcagca ttccgttctc agcgtgagta ttcgcaattc ctgcttcgta
     3481 gaacattgcc gtcgcacctg cgcgcgcggc tttcacgcgc gaggcgtcgg tcgtcaggag
     3541 ccgtctgatt acgtcgctgc gtgaggatac aaatgcgccg attacaaaaa gcagcgccac
     3601 atcaaccggc acccaataag tgtggaaatc gaacggggac aagagaacga acagcagacc
     3661 gatgaaagcc aacagtgcgc cgcagaggta atcagcgtgg cgataggacc ccgatcgccc
     3721 gcgcaccacg ataacgatct cggcatcggt ggtcttctcg atgtcgcgta cggcttgcgc
     3781 gatcgcgtcg ccggcctgat cgaatttcgc gtgactcatt gtcctcgctt cattaagaaa
     3841 cgcaaacggc ccagctattc actggaccgt tgagtgtcat gcgagcctga tacggggcaa
     3901 cctcgccaaa gctttacgtc tatttgaaac tgctcaacgc ctcggactcg ttgtcatata
     3961 cgtcaaacac ggtcagcagt ttcgtgatca ccaacaggtc ttgaacctta tcagtgaggt
     4021 ttaggagttt gagctggccg cccccgcgac caaccgtagt gtagttggca atcagttcgc
     4081 caatgccgct ggaatcgatg tatctcactc cggcaagatt caacaaaagc ttcttgttgc
     4141 cgccggccac cagacctcta atcgcgccgc gcaacgcggt gctgctgtcg ccaatgcgga
     4201 cttcgccgtt caaatccaaa accgccacgt caccggcctg gcgctgtttg atgtccaatt
     4261 cagccatcgc tgaaacctcc agtgttagtc agccattgcg caatcaccgg ctatccagcc
     4321 acaacgattg cgccacaaaa atttcatttg aagttgctga acgcctccgc ttcggtgtca
     4381 taggcatcga agaccgtcaa caacttcgtg atcgtaagca agtctcgcaa cttttctgtc
     4441 aagctgagca gtttgagctg cccaccttct ttattgatcg ccgtgtaact cgacaccaac
     4501 tcaccgatgc cgctcgaatc gatatagccc acgcccgcca gattcagcaa gatgtttttc
     4561 ttgccttctt caagcaaacg gcggacggcg ctgcgcaaag ccacgctgcc ttcgccgatc
     4621 gttatgcggc cgtccatgtc gaggactgtc acatcgccgg cctggcgctc tcgaatattt
     4681 agttctgcca tgatccagga ttctcctctt gaagtctcag acctaaaatt tcttcacgag
     4741 tctcaacgtc gtaccgccct cgggcctcgc cgaccattga acttcatcca tgaaattgcg
     4801 aatcaagaaa ataccacgcc ctgaagtctt cagaatgttt gcggcatcgg ttgggtcggg
     4861 cacatcgacc ggatcgaatc cttcgccttg atcgttgatc tctatttcca gcgcgtgttg
     4921 tcggcagcta aaagtcactt caaccgactt tgcttcgtct tcctggttgc cgtggaccac
     4981 cgcattcgtg accgcctcgc ggacggccat gtcgatgccg aaggctatgc tctcgtccac
     5041 accgcaactc tgagcgaaac gcgacgcagc ggcagcagcg tcagcaaccg cctcaatgtg
     5101 gctgggcaaa acgagtcgag tcgtttgttc ggtcacaaaa ggcgcggcct ttctcgccgg
     5161 ggaattgcgg tttggctgct gctatctaat agcaaatgaa gacggacgtg taacatgctc
     5221 gctggccgtg tgtcaatggg agcgcaggca tcctgcctgc attgagcgcg aaagcgcgaa
     5281 ccgcctgccg gtggtaagat tcttttcgtg atcattcagc cagcaaaacg gatcagagga
     5341 cgcctcgtaa tgccaggcga caaatcaatc tcgcatcgcg cggcgatgat tgcggcgctg
     5401 gccgaaggca cttcgcgcat caagaacctt tcgaccagcg ccgattgcgc tgcgactttg
     5461 ttgggtttgc agcagctcgg cgtgggaatt gatcatgacg gcagcgacgt tctgattcac
     5521 ggtgtcggcg ctaatggctt aagagagccg cgtgaaccac tcgattgcgg caacagcggc
     5581 acgacgatgc gtttgctcgc cgggattctt gctggccaga atttcgaatc aactctaact
     5641 ggcgatgagt cgttgtgctc gcgtccgatg cgaagaatcg tcgaaccgct cgaaatgatg
     5701 ggcgctcatg tttcgtcgcg ggatggtcgc gcaccattga tgattgaagg ccgccgcccg
     5761 ttgcacgcga tcagctacga attactcgtc gccagcgcgc aggtaaagtc atgcattctg
     5821 ttagcaggtc tgagcgcgga aggacaaact gaagttatgg aaggtgaagc cacacgcgat
     5881 cacactgaac gaatgctgag ttggttcggt gtttctgttg agacgcgagt gggagagcgt
     5941 gaaggctctc gcgtcgccgc catcgaaggg ccggcgcgtt tcaacgcacg cgacatttcg
     6001 attcctggcg atctttcttc ggctgcatac ttcgtggctg ctgccgcgct attgccaggt
     6061 tccaaacttg caatcgaaaa cgtcgggttg aatgcgacgc gagatcagtt cttgtccacg
     6121 cttcagtcat tgggcgcaaa catatctcgc ggagatccgc gcgaagactg caacgagccg
     6181 agcggcacga ttgaagtgcg aagtgaaacg atgtctttgg agctgacgga actgacgcgg
     6241 cgaattcgcg ggtccgtgat atcccaattg attgacgagc tgccgctgtt ggctgttgtc
     6301 ggttcgcaag tcgaaggcgg tattgagatt cgcgacgccg ccgagttgcg cgtgaaagaa
     6361 tccgaccgta tcgcgaagac agcacagaat ttacgcgcga tgggcgccgc ggtcgaagag
     6421 ttcgacgacg gcttgcgcgt ttccgggcca acgcaacttc acggcgcggc gatcgatccg
     6481 cgcggcgatc atcggatcgc gatggcgttt agtgttgccg ggctgattgc tgacggtgag
     6541 accgaaatcc aagatgctgg ctgcgttgcg gtctcgtttc ctgaattctt taatcttctc
     6601 gacgcggtgg tcgaaagatg accaagcttc gccgcaaagt catcgttgga ttcatgggct
     6661 gcggaaaaac caccgtcgcc gcagcgctcg cgcggcgact cggctgcgag atgatcgatc
     6721 ttgattcatt catcaccgaa cgtgaaggtc gttcacccgc tgagatcatt aa
//
LOCUS       DASZZE010000039         1818 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_228931, whole genome shotgun sequence.
ACCESSION   DASZZE010000039 DASZZE010000000
VERSION     DASZZE010000039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1818)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1818)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1818
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_228931"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..294
                     /locus_tag="VHD88_00715"
     CDS             <1..294
                     /locus_tag="VHD88_00715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20332.1"
                     /translation="EVLKGDLLHYTLGDAARHHRMIGERYAPLGARKMFAQGRRTSPF
                     KIATIGPATFVRSFILKGGFRDGLAGFTIARFAAHHAFLKHLMLWELQNDSKP"
     gene            complement(284..1405)
                     /locus_tag="VHD88_00720"
     CDS             complement(284..1405)
                     /locus_tag="VHD88_00720"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HVS20333.1"
                     /translation="MRILQICSARELGGGEKHLADLANALARRGHDVHAALIPASPLL
                     GELSALPTQNILELAMRNSLNARSALKLVRFVRENQIEIIHAHVARDYPLAALVAARA
                     GGVPVVLTRHVLFPLKKVHRLTLRRVARVIAVSQAVADGLRGQRIFDERKIVVIHNGI
                     DLEKFSREGNDRVAAQAKARGNQNRLQVGAIGHIAPIKGHDDFIRAAAIVNSQRDDVD
                     FIIAGEDKSRTGDHRRQIEELIDDLGLGERVRLSGWVNDVAQLLSTLDLFVSSARSEP
                     FGLAIVEAMAAGVPVVATRSEGAREIIDADTTGKLVPIGDVEALAKAICELLADPTER
                     ANLSANARRAVSERFSLEQMVDATEQLYRQVLSESATTA"
     gene            1513..>1818
                     /locus_tag="VHD88_00725"
     CDS             1513..>1818
                     /locus_tag="VHD88_00725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20334.1"
                     /translation="MMKSQRRTRFWAKKLLLILFGLLVGCTFSEIFLRVIGYSYPIFY
                     TTDYYRGFALRPGIEGHYQREGESYVRINSDGLRDREHSKTKPPDTVRIAVLGDSFVE
                     "
BASE COUNT          386 a          539 c          494 g          399 t
ORIGIN      
        1 gaagtgctga aaggcgatct actgcattac actctcggcg atgccgcacg gcaccatcgc
       61 atgattggcg agcggtacgc gcctttggga gcacgcaaga tgtttgctca ggggcggcgc
      121 acctctccgt tcaagattgc gactattggt ccggcgacct ttgttcgcag cttcattctc
      181 aaaggcggct ttcgcgatgg tctggctgga ttcacgatcg ccaggttcgc cgcgcatcac
      241 gcctttctca aacacctgat gctttgggag ctgcaaaacg attctaagcc gtagtcgcac
      301 tctcgctcag tacttgccga tatagctgtt cagtcgcgtc caccatttgc tccagagaga
      361 agcgctcact aaccgctcgc cgagcattcg cgctgaggtt cgcgcgctcc gttggatcgg
      421 ccagcaattc gcaaatcgct ttcgccagag cttcgacgtc gccgatgggc acaagcttgc
      481 cggtcgtgtc agcgtcgatg atttcacgcg cgccttcgga cctggtggcg acgacgggca
      541 cgccggcggc catcgcctcg acgattgcca aaccgaaagg ttccgaccgc gccgacgaaa
      601 cgaaaagatc aagtgtggag agcaactgcg ccacgtcatt tacccagcca ctcaagcgca
      661 cgcgttcacc caaaccgaga tcgtcgatca gttcttcgat ctgacgccga tgatcgccgg
      721 ttcgcgattt gtcctctccg gcaataatga aatcaacgtc atcacgctgt gaattaacta
      781 ttgcggcggc gcgaatgaaa tcgtcgtgtc ctttgatggg cgcgatgtga ccgatcgccc
      841 cgacctgtaa tctattctga tttccgcgcg ctttcgcctg cgccgcaacg cgatcgttcc
      901 cttccctgct gaatttctca aggtcaatgc cgttgtgaat cacaactatc ttgcgctcgt
      961 cgaagattcg ttggccgcgc agcccgtcgg caactgcttg cgacaccgcg atgacgcgag
     1021 caacgcggcg cagcgtaagt cgatgaacct tcttcaaggg aaagagaacg tggcgggtga
     1081 gcacgaccgg cacgccaccg gcgcgcgccg cgaccagcgc cgccagcgga tagtcgcgtg
     1141 ctacatgcgc atggatgatc tcgatctggt tttctcgtac gaagcgtacg agcttcaaag
     1201 cgcttcgcgc atttaaggaa ttgcgcatcg ccagttccag aatgttttgc gttggcaggg
     1261 cggacagctc gcctaacaat ggcgaggcag gaatcagcgc cgcgtgaaca tcgtggcctc
     1321 gacgcgccag agcatttgcc agatcggcca gatgcttctc accgccgcca agctcgcgcg
     1381 ccgaacatat ttgtaagatt ctcatcgccg atttccgccg ccagcaatct aacacaaaca
     1441 ttgcaaggca atgctacctt gaggttcgcc gacttgctgt agtacaagac tcgctcgcgc
     1501 agaacgatat cagtgatgaa gtcacaaagg agaacacgat tttgggcaaa gaagttactg
     1561 ctgattcttt tcgggctgct ggtcggttgt actttcagcg aaatattcct gcgagtcatc
     1621 ggctactcct atccgatttt ttacacgacg gattactatc gcggcttcgc gctgcgaccc
     1681 ggaatcgaag gtcactacca gcgagagggc gagtcttacg tgcgcatcaa cagcgacggt
     1741 ctgcgcgacc gcgagcattc aaagacaaaa ccacctgaca cagtgcgaat tgctgtgctc
     1801 ggcgattctt ttgtcgag
//
LOCUS       DASZZE010000040         1560 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_196955, whole genome shotgun sequence.
ACCESSION   DASZZE010000040 DASZZE010000000
VERSION     DASZZE010000040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1560)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1560)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1560
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_196955"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..219
                     /locus_tag="VHD88_00730"
     CDS             <1..219
                     /locus_tag="VHD88_00730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20335.1"
                     /translation="LGYAAIRPRFGAGPKTAIIAALFAWFGVYLYTGIINSMLFAIPI
                     NTMLIVLVWGLVEYVIGALVGAWLYKEA"
     gene            290..598
                     /locus_tag="VHD88_00735"
     CDS             290..598
                     /locus_tag="VHD88_00735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20336.1"
                     /translation="MSWKRLLVSIPLGFLIMIADGVSLMLVNRLYRPVHPPAWMIAAF
                     FYFDAWPLFITQHIFPGAPGHSGPTFLAVAAAGLIDLIVFSLVVYALLSWRARKKARA
                     "
     gene            573..>1560
                     /gene="hutI"
                     /locus_tag="VHD88_00740"
     CDS             573..>1560
                     /gene="hutI"
                     /locus_tag="VHD88_00740"
                     /EC_number="3.5.2.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR01224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050480 - imidazolonepropionase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazolonepropionase"
                     /protein_id="HVS20337.1"
                     /translation="MPAKKPVPETLAVVNCSQLVTLAGPARPRVGAELRDLSIIEDGA
                     MIVRGDRIERVGTRKEIDQLIDGDCAVIDGGQRVVMPGFVDAHTHPVFAGNRADEFEQ
                     RAGGATYQEIAARGGGIKSTVRKTRDASLDELINAGKRYAEWFLRSGTTTIEGKSGYG
                     LTLEDELKILRAIKRLSEETPLSYVPTFLGAHDIPEEYKSRRTAYVDLVINEMLPRVA
                     EEKLAEYCDVFCEEGVFTVDESWRILSAARCHGLGLRVHADQLSLSGGANLAAELNAA
                     TADHLEHTDATGIAALKAANVQPVLLPGSVYALGSNQYPPARAMIDAGLAVVL"
BASE COUNT          316 a          432 c          450 g          362 t
ORIGIN      
        1 cttggatatg cggcgatcag gcctcggttt ggtgctggtc ccaagacggc aatcattgcc
       61 gccctgtttg cgtggttcgg tgtctatctc tacaccggaa tcatcaactc catgttgttc
      121 gcgatcccta tcaatacgat gctaatcgtt ctggtgtggg gattggttga atacgttatc
      181 ggcgcgcttg tcggtgcgtg gctttataaa gaagcctagc aacgatgggt agtgggctcc
      241 ccgaacactc gctagtcagc ggagctcacg aaatagtttg gtgcggctca tgagttggaa
      301 acgacttctg gtctcaatcc cgctcggctt tctcataatg atcgccgacg gcgtgtcatt
      361 gatgttggtc aaccggctct atcggccagt ccatccgcct gcctggatga tcgctgcatt
      421 cttttacttc gacgcctggc cgctttttat tacgcagcac atcttccctg gcgcgcccgg
      481 tcacagcggc ccgacgtttc tcgcggtagc cgcggccgga ctgatcgatc tgatcgtttt
      541 ctctttggtc gtttacgcgc tgctctcgtg gcgtgcccgc aaaaaagccc gtgcctgaaa
      601 ctctcgcggt cgttaattgt tcgcagttgg tgacacttgc cggacccgcg cggccgcgcg
      661 tcggcgcgga actacgcgac ctttcgatca tcgaagacgg cgcgatgatc gtgcgcggcg
      721 atcgcatcga acgagtcggc acgcgcaaag agatcgatca actgatcgac ggcgattgcg
      781 cagtgatcga tggtggccag cgagtcgtga tgcccggatt cgttgacgcg cacacgcatc
      841 cggtctttgc cggaaatcgt gcggatgaat tcgaacaacg ggcgggcgga gcaacttatc
      901 aggaaattgc cgcgcgcggc ggcggaatca aatcaacagt tagaaagacg cgcgatgctt
      961 ccctcgacga actgatcaac gcaggcaagc gttacgctga atggtttctt cgttcaggca
     1021 cgacaactat cgaaggcaaa tccggttacg gcctgacgct tgaagatgaa ctgaaaattc
     1081 tgcgcgccat caagcggcta agcgaagaaa caccgctgag ctatgtgccc acgtttctcg
     1141 gcgcgcatga cattcctgaa gaatacaaat cacggcgaac ggcttacgtg gatttggtaa
     1201 tcaatgaaat gctaccgcgc gtcgccgaag aaaaactcgc cgaatactgc gacgtctttt
     1261 gcgaagaagg cgtgtttact gtcgacgagt cctggcggat tctttcagcc gcgcgttgtc
     1321 atgggcttgg tttgcgcgtg catgcagatc agctttcgct ttcgggtggc gcaaatctcg
     1381 cggcagaatt aaacgcggcg accgcagatc atttggaaca caccgacgcg accggcatcg
     1441 cggcgttgaa agccgcgaac gttcagccgg tgcttctgcc tggctcagtc tatgcgctcg
     1501 gttcaaatca atacccaccg gcgcgcgcaa tgattgacgc gggactcgcg gttgtgcttg
//
LOCUS       DASZZE010000041         1822 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_180512, whole genome shotgun sequence.
ACCESSION   DASZZE010000041 DASZZE010000000
VERSION     DASZZE010000041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1822)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1822)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1822
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180512"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(75..800)
                     /locus_tag="VHD88_00745"
     CDS             complement(75..800)
                     /locus_tag="VHD88_00745"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HVS20338.1"
                     /translation="MRDTISVFLIHLARLRAEAGPFLLAALVFPTAMYLFANAIRGDA
                     AEEQNRFRFLAASIVFSLSLTAISWLGYLLLENRFTGRLKLFATLPLAPSSYVFGILI
                     FGVAQSILGCGALLIVARLLGARTQLGVLPLTLTILLTMLCLSGISVIIATRARSFSE
                     GSLLTDSFGAGLVFLAPVYYSPEAMPHALRVVSEWLPTARAAHAVQAALAGNYATWDL
                     AILGGMAIVSLSLGFKLMRFREN"
     gene            complement(797..1774)
                     /locus_tag="VHD88_00750"
     CDS             complement(797..1774)
                     /locus_tag="VHD88_00750"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HVS20339.1"
                     /translation="MSTTVISEVDQSVAEELHAARELAPGKDAPAAIRACGLVKQYRD
                     GTQANRGIDLEVRRGELVSILGPNGAGKTTFLRQITAELRPTSGSVEIFGLDAIAAPQ
                     QAKRAMGITPQEAGVFETLRVREHLELFGGFKGLAKREARRSATEIIDELGLDAEANK
                     RVGDLSGGQRRRILIGLALLGNPPLLVLDEPTTGLDPVSRRAVWNVIRRRVTDGCTVL
                     LSTHYIEEAERLSDRVGIISAGKMIAIGTLDELLSRLTKSYRLSYRELLDETQVRYFR
                     TFAEAQDYVAEQRIAEYSLARASLEDVYFELTGHRFEDEQAEESALCPA"
BASE COUNT          414 a          538 c          514 g          356 t
ORIGIN      
        1 aggaaagagt caagaccaga atgcgaggca ttacattcat gcttgaaccg gaactgtgtt
       61 gatagctttc ctgattaatt ctctctaaac cgcatcaatt tgaatccaag tgaaagactc
      121 actatcgcca tcccgccaag aatcgccaaa tcccaagtcg catagtttcc agcaagtgct
      181 gcctgcacgg cgtgtgccgc gcgggctgtt ggcagccact cagaaaccac tcgcaacgcg
      241 tgcggcatgg cctcaggaga gtaatacact ggcgcaagaa aaaccagacc cgcgccgaag
      301 gaatccgtca ggagcgagcc ttcgctgaag ctgcgcgcgc gcgtcgcgat aatcacgctg
      361 atgccgctga ggcaaagcat cgtcagcaga atcgtcaggg tcaaaggcaa cacgcccagt
      421 tgagttcggg cacccagcaa gcgagcgacg atcagcagcg cgccacaccc gaggattgat
      481 tgcgcgacgc caaagatcag tatgccgaag acatatgaag atggcgccag cggcaacgtc
      541 gcaaagagtt tgaggcgtcc ggtgaagcga ttctccaaaa gcaaatagcc cagccagcta
      601 atcgccgtca acgaaagcga aaagacgatc gaggcggcga gaaagcgaaa tcgattctgc
      661 tcttcggccg cgtcgcctct aatcgcgttg gcaaagagat acatcgccgt cgggaaaact
      721 agcgccgcca gcagaaacgg tcctgcttct gcccgcaagc gcgcgagatg aatgagaaag
      781 acgctgattg tgtccctcaa gctgggcaaa gcgcgctctc ctccgcttgt tcgtcttcga
      841 aacgatgacc ggtgagttcg aaatagacgt cttccagcga agcgcgcgcg agtgaatact
      901 cagcgatgcg ctgttcagcg acatagtcct gagcttccgc gaaggtgcga aagtagcgca
      961 cctgcgtttc gtccaaaagt tcgcgatagc tcaggcgata gcttttcgtg agccgtgaca
     1021 gaagttcatc aagcgtgccg atggcaatca ttttcccagc gctgataatg ccgacgcggt
     1081 cgctgagacg ttcagcttcc tcgatgtaat gcgtggacag cagcaccgtg cagccatcag
     1141 tcacgcgccg ccggatcaca ttccaaaccg cgcgccgcga cactggatcc aagccggtcg
     1201 tgggttcatc gagcacgagc agcggcgggt tgcccaataa agccaggccg atcaaaatgc
     1261 gccgccgctg gccgccagag agatcgccga cgcgtttgtt ggcttcggcg tcgaggccca
     1321 gttcgtcaat tatttcggtc gctgagcggc gcgcctcgcg cttcgcgagc cccttgaatc
     1381 ctccgaacaa ctccagatgc tcgcgaaccc tgagcgtttc gaacacgccg gcttcctgcg
     1441 gcgtgatgcc catcgcgcgc ttggcttgtt gcggcgcagc gatcgcatcc aggccgaaga
     1501 tttccacgct gcccgaagtc ggtcgcagtt cagccgttat ctggcgtagg aaggttgtct
     1561 tgcccgcgcc gttcgggccg aggatagata caagttctcc gcgtcggact tcgagatcga
     1621 ttccacgatt ggcttgtgtg ccgtcgcgat attgcttcac gagaccacac gcacggatcg
     1681 cggcgggcgc gtctttgcct ggcgcaagct ctcttgccgc gtgaagttct tccgcgacag
     1741 attggtcgac ttcgctaatt actgtagtgc tcaagggttt tcaacgttct caactcaatt
     1801 gcatgaaatc catcgccgac cg
//
LOCUS       DASZZE010000042         1797 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_245525, whole genome shotgun sequence.
ACCESSION   DASZZE010000042 DASZZE010000000
VERSION     DASZZE010000042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1797)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1797)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1797
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245525"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(70..1233)
                     /locus_tag="VHD88_00755"
     CDS             complement(70..1233)
                     /locus_tag="VHD88_00755"
                     /inference="COORDINATES: protein motif:HMM:NF014523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HVS20340.1"
                     /translation="MPRSTRNIGLSELRVGLLVLIAIAVLILLILNASGELNPFASHL
                     HLRARFADANGLREGSEVRLAGVRIGKVDRIKLMTPTEVGNATNAPNPPKVEAYLTID
                     TKIDGVPATDRIRTDSTAQQASPSILGSEMIVNITPGTSIGQPVKENDLLPSTSGSTM
                     SDLATSGTELAQKLSKLSDQLNEVVKNVRDGKGTVGRLFNDESLYNNLNATIRDAEDL
                     AQQIKSGKGSAGKFVYDEALYNNTNDIAANLKKLSADLTAGRGTAGKLLESDEMYNKI
                     NRIADRVNHSMDQIDSIVADVNAGHGTLGKLVKDEAIYNDARTAIARFNTTAERIDNV
                     VAGAQRGEGTLGKLITDDQLYSNVNNLSSEGVKMLYDFRQNPKKYLTIKFQLF"
     gene            complement(1398..>1797)
                     /locus_tag="VHD88_00760"
     CDS             complement(1398..>1797)
                     /locus_tag="VHD88_00760"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HVS20341.1"
                     /translation="MPAELSGGMRRRVGIARALVGDPKIVMFDEPTAGLDPPTARTIC
                     ELAMKLRDLEDVSSIFVTHEMNNLDYICSEYAVVNEAGEVVFEKEGEKLCLINSKVLM
                     MRDGQVIFSGTDETLRKADDAYIHKFLRGH"
BASE COUNT          366 a          494 c          484 g          453 t
ORIGIN      
        1 cacgatgcta aatcgcgagc ttttgtgcga tctccggcag ccataagaat tcatcaatga
       61 acatgcagac taaaacaact ggaacttgat cgtcagatac ttcttcgggt tctggcgaaa
      121 gtcgtagagc atcttcacgc cttcggacga gaggttgttg acgtttgagt agagctgatc
      181 gtcggtgatc agttttccga gcgtgccttc gccgcgttgc gcgccggcga ccacgttgtc
      241 gatgcgctcg gccgtcgtgt taaagcgggc aatggccgtt cgcgcgtcat tgtagatcgc
      301 ttcatccttc accaacttgc ccaacgtgcc gtgcccggcg tttacgtccg cgacgatcga
      361 atcgatctgg tccatcgaat gatttacgcg atcggcgatt cgattgatct tattgtacat
      421 ctcgtcgctc tcgagcagct ttccggccgt gccgcgtccc gcggtgagat cagccgaaag
      481 ctttttcaga ttcgctgcga tgtcgttggt attgttgtaa agcgcttcgt catagacgaa
      541 cttgccggca gagcccttgc cgctcttgat ctgctgagct aaatcttccg catcccgaat
      601 cgtagcattc agattgttgt aaagagactc gtcattgaac aaacggccga ccgtgccttt
      661 accgtcgcgc acgtttttca caacttcgtt tagttggtct gacagtttgc tgagtttttg
      721 ggccagttca gttccggatg tagcgaggtc gctcatcgtg ctgcccgagg ttgatggcag
      781 cagatcattc tccttcaccg gttggccgat tgacgtgccg ggcgtgatat ttacgatcat
      841 ctcgctgccc agaatgctgg gcgatgcctg ctgtgcggtt gaatccgtgc ggatgcgatc
      901 ggtggccgga acgccgtcga tcttggtgtc gatggtgaga tacgcttcga ccttgggcgg
      961 attcggcgcg ttcgtcgcgt tgccaacctc agtcggcgtc atcagcttga tgcgatccac
     1021 cttaccgatg cgcacgccgg caagccgaac ttccgaaccc tcgcgcagcc cgttggcgtc
     1081 ggcgaagcgc gcgcgcaggt gcaggtggct ggcgaaagga ttgagttctc ccgatgcgtt
     1141 cagaatcaag aggatcagaa cggcgatcgc gattagcacg agcaagccta cgcgcagctc
     1201 gctaagaccg atgtttctag ttgatcgtgg cattgcgaaa atcagggatg aaggatgagg
     1261 gatgaaggat gaagaaaaac aaacttcatc gatccagcct ccggcacttc gtcctttttc
     1321 ctttcagctt gtagtctcag gactaaggtc gaggtggaag aattcatcct tcatccctca
     1381 tccttcatcc ttgcttttca gtgtccgcgc agaaacttgt gaatgtacgc gtcgtccgct
     1441 ttgcgcaacg tctcgtccgt gccgctaaag ataacctgtc cgtcgcgcat catcaaaacc
     1501 ttgctgttaa tgaggcaaag cttttcgcct tccttctcaa aaactacttc gccggcttcg
     1561 ttgaccacgg cgtattccga gcagatatag tcgagattgt tcatctcatg ggtaacaaaa
     1621 atggatgaaa cgtcttcgag atcgcgcaac ttcatggcca actcgcaaat tgtgcgcgct
     1681 gttggcggat ccaatcccgc ggtcggttcg tcgaacatca caatcttcgg atcgcccacc
     1741 agcgcgcgag caatacccac tcggcggcgc ataccgccgg aaagttcagc cggcatt
//
LOCUS       DASZZE010000043         2956 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_66768, whole genome shotgun sequence.
ACCESSION   DASZZE010000043 DASZZE010000000
VERSION     DASZZE010000043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2956)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2956)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2956
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66768"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            160..639
                     /locus_tag="VHD88_00765"
     CDS             160..639
                     /locus_tag="VHD88_00765"
                     /inference="COORDINATES: protein motif:HMM:NF024206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HVS20342.1"
                     /translation="MPRAGAFVSTLVLSLTIVGALPSARQQRQRFFAEAVMDGDFGRV
                     RMLRFAGANINTRGNCCAPLYLAAGEGRLDVVRYLLDNGANVSAREKLGGTALNEAAY
                     YGHLEVVKELLFRGAEVNAIGDDGTALDIATTRKFAEIAELLRHHGGRKACDLRKCG"
     gene            666..>2956
                     /locus_tag="VHD88_00770"
     CDS             666..>2956
                     /locus_tag="VHD88_00770"
                     /inference="COORDINATES: protein motif:HMM:NF019605.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HVS20343.1"
                     /translation="MTKLSPTEIYNGRKVFLIGSTGFLGKVTLSMLLHRFPNIGRVYV
                     TVRARSQEESEARFWNNVITAPPFNPLRERYGSALDGFIRDKVAIVGGDIAENNLGFA
                     DEEAQRIADDIDVVINSAGNVTFNPTLESGLRTNVVGIQNVIAFTKRMKRPALIHIST
                     CFVAGNRSGAVWENDDVIGYFPRKNELNGVQFSVDSEIRDCAKMSERAREEAKDAMMV
                     AHFREQARKRLDEEMRDADDPDALGLAVARERKVWTRNRLTELGIERAKFWGWPNIYT
                     YTKALGEQLVAAETEIVRSIVRPSIVESALSYPFPGWNEGFTTTAPIIFMTLKGQRQI
                     PANEKLVLDITPVDQVAAVMLAVAAQACVEQPRLVHQAATGDSNPNNMERIISLVGLF
                     RRQQELEKKDGLRLFREISGRTEPFRVSPERFDSTSLPMMNNAAKKVSGLLDKARPRW
                     GGGRYEGVINRIKQTVDQVAESTREAAEAFEMFHPFTVENAYVFRSDNVRALFDRIRE
                     EERQLLTWNPQTFDWYDYWLNIHLPGLTKWVLPTLEEEMRTQPKRIYTYRDLLEMFET
                     TTKRHTTRVAMRIERDGHKEQYTYADLRELATRAAAFLADKGIKSGDRVMLFSHNAPE
                     WGMTYFGVLKAGATCIPVDPDSSTEEIVNFARAGDASGIVISAQLKEEHANLQKALKD
                     AGLGAIQLWTFEEVFEMPDQETEDQRVALLPQRASAQSVASLIFTSGTTGRPKGVMLS
                     HRNFTSMVSMLSSVFDMDTSDGV"
BASE COUNT          676 a          800 c          871 g          609 t
ORIGIN      
        1 cccgcgatgc tcggttggga acgcgccgac aatctgacgg aagctatcgc tatggcgcgc
       61 aattacatgg ggaactctgc cgagatcacg atgctgcacc agccgatgat tggcattgcc
      121 gacatggaat agacggtgaa gaagacgatc acgaaattaa tgccaagggc cggcgcgttt
      181 gtgagcacgc ttgtgctttc gctcacgatt gttggcgcgt taccctcagc caggcaacag
      241 agacaacgct ttttcgccga agcggtcatg gacggagact tcgggcgcgt gcggatgttg
      301 cgcttcgcgg gcgctaacat taacacgcgc ggcaattgtt gtgcgccgct ctacctggcc
      361 gccggggaag gaagactcga cgtggttcgt tatctgctcg acaacggcgc caatgtcagc
      421 gctcgcgaaa aactgggcgg cacggccctt aacgaagccg catattacgg ccaccttgag
      481 gtcgtgaagg aacttttgtt tcgcggcgct gaagtcaacg ctatcggcga cgacgggacg
      541 gcgttggaca ttgcaacgac gagaaagttc gctgagatag ctgaattatt aaggcatcac
      601 ggcggaagaa aagcttgcga ccttcgcaag tgcggttgag cgtttgtttt catacgaaga
      661 tcataatgac taagctttca ccaaccgaaa tttataacgg ccgaaaggtt tttctgatcg
      721 gcagcaccgg ctttctcggc aaagtcacgc tgagcatgtt gctgcaccgc ttcccgaata
      781 tcgggcgcgt gtacgtcacg gtgcgcgcgc gatcgcagga ggaatcggaa gcgcgctttt
      841 ggaataacgt gattaccgcg ccgcctttca atccgctgcg cgaacgatac ggcagcgcgc
      901 tggacggatt cattcgcgac aaggttgcaa tcgtcggcgg cgacatcgcc gaaaacaatc
      961 ttggctttgc tgacgaagaa gcacagcgaa tcgcagacga catcgatgtt gtaatcaact
     1021 ccgcgggcaa tgtcactttc aatcccacgc tcgaaagcgg gctgcgcacg aatgtcgtcg
     1081 gcatccaaaa cgtgatcgcg ttcacaaagc gcatgaagcg tcccgcgttg attcacatct
     1141 cgacgtgttt cgtggccggc aatcgttcgg gagcggtgtg ggaaaatgat gacgtaatcg
     1201 gttactttcc gcgaaagaac gagctgaatg gcgtccagtt ctcagttgat tccgagattc
     1261 gcgattgcgc gaagatgtcc gaacgcgctc gcgaagaagc gaaagacgcg atgatggtcg
     1321 cgcactttcg cgagcaggcg cgcaaacgcc tcgacgaaga aatgcgtgac gcggacgatc
     1381 ccgacgctct tggtctcgcc gtcgcgcgcg agcggaaagt ctggacgcgc aatcgtctaa
     1441 ctgagctggg catcgagcgc gcgaagttct ggggctggcc taacatctac acctacacga
     1501 aagcgctcgg cgaacaactc gtcgccgccg aaactgaaat cgttcgcagc atcgtgcgac
     1561 cgagcatcgt cgaatcagca ttgagttatc ccttcccggg ctggaacgaa gggttcacga
     1621 ctaccgcgcc gatcatcttc atgacgctga aaggtcagcg tcagattccc gcgaacgaaa
     1681 aactggtcct cgacatcacg cccgtcgatc aggtggctgc ggtgatgctg gcggtggcgg
     1741 cacaagcctg cgtcgaacag ccgcgtctgg ttcaccaggc cgcgaccggc gattctaatc
     1801 ccaacaacat ggagcgaatc atttcgctgg tgggactgtt tcggcggcaa caggagcttg
     1861 agaagaagga tggcttgcgt ttgtttcgcg aaatctcggg gcgcacggag ccctttcgcg
     1921 tttctccgga gcggttcgac tcaacttcgt tgccgatgat gaacaacgcc gcaaagaaag
     1981 tttctggatt gctcgacaaa gcgcgcccgc gctggggggg cggtcgctac gaaggcgtga
     2041 tcaatcgaat caagcaaacg gtcgatcagg ttgcggaatc gacgcgtgaa gcggcggaag
     2101 cgttcgagat gttccatccg tttacggttg aaaatgcata cgtctttcgc tcagacaacg
     2161 tgcgcgcgct cttcgatcgg atccgcgaag aagagcgaca gcttctgact tggaatcctc
     2221 aaacgtttga ctggtacgac tattggctca acattcacct gccgggtctg acgaagtggg
     2281 tgctgccgac tctggaagag gaaatgcgca cgcaaccaaa gcgcatctac acctatcgcg
     2341 atttgctcga gatgttcgag actacaacga aacgccacac gacgcgcgtc gcaatgcgca
     2401 tcgaacgcga tggacacaaa gagcaataca cctacgcgga tttgcgcgag ttggccacgc
     2461 gcgccgctgc gtttctcgct gacaaaggaa tcaagtccgg cgatcgcgtg atgctgttca
     2521 gtcacaacgc gcctgagtgg ggcatgacct actttggcgt attgaaagcc ggagcgactt
     2581 gcatcccggt tgatcctgac agttcaactg aagagatcgt caacttcgcg cgtgccggtg
     2641 atgcgtcggg catcgtcatc agcgcgcagt tgaaggaaga acacgccaac cttcagaagg
     2701 cattgaaaga tgctggactc ggcgcaatcc agctttggac ttttgaagaa gtcttcgaaa
     2761 tgccggacca ggaaacggaa gatcagcggg ttgcgcttct gcctcaacgt gcgtcagcgc
     2821 aatcggtcgc ttcgctcatt ttcacttcgg gcaccactgg ccgaccgaaa ggcgtgatgc
     2881 tttcgcatcg aaactttacc agcatggttt cgatgctgtc gtctgtgttt gatatggaca
     2941 cgagcgacgg cgtgtt
//
LOCUS       DASZZE010000044         1759 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_1576, whole genome shotgun sequence.
ACCESSION   DASZZE010000044 DASZZE010000000
VERSION     DASZZE010000044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1759)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1759)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1759
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1576"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..300)
                     /locus_tag="VHD88_00775"
     CDS             complement(<1..300)
                     /locus_tag="VHD88_00775"
                     /inference="COORDINATES: protein motif:HMM:NF017215.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase/oxoprolinase N-terminal
                     domain-containing protein"
                     /protein_id="HVS20344.1"
                     /translation="MNKKTNRQGSHSVRVGVDTGGTFTDFVFEAGGQWRIFKLASTPD
                     DPSRAIAEGLKRIAEEAGARLAQIEVVHGTTVGTNALLQRRGARTALVTTSGFEDV"
     gene            complement(442..1533)
                     /locus_tag="VHD88_00780"
     CDS             complement(442..1533)
                     /locus_tag="VHD88_00780"
                     /inference="COORDINATES: protein motif:HMM:NF014893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HVS20345.1"
                     /translation="MTANSLVCIGIIGTGFARTTQIPGFKNCEGARIVAIASAYRENA
                     EKVAREFGIERVEADWRALIARDDIDLVSVVTPVVTHCEMTLAALAAGKAVLCEKPMA
                     MNADEARRMTDRAREAGMLALIDHELRFLPGRVKLHELLRRGDIGKVRHAKLLFRADS
                     RADVNRPWNWWSDITKGGGTLGAIGSHVIDGFRWLLNAEVAEVFCNLATHVHKRKDEA
                     GEVREVTTDDEANLLLRFADGELTEGATGNVSLSMVEAGKPGHRLEIFGSRGALKIEE
                     GGELSQCQVGDGEWKRIETDHGELANGMRDGGWARGFTAYSRKIVEALREGRTTVEGA
                     ATFEDGYRTQLVLDAARASNESGCWAKIR"
BASE COUNT          361 a          550 c          450 g          398 t
ORIGIN      
        1 cacatcctca aaccctgaag tcgtcaccag cgccgtgcgc gcgccgcgcc gctgcagcaa
       61 cgcgttcgtg cccacggttg tgccgtgcac gacttcaatc tgagcgagac gcgcgcccgc
      121 ttcttcggcg attcgcttca gaccttccgc aatcgcgcgc gacggatcgt ccggcgtcga
      181 ggcaagtttg aaaatgcgcc actggccgcc ggcttcgaaa acaaaatccg tgaacgtgcc
      241 gccagtgtcc acgccgacgc gcacactgtg actaccttgt ctgttagttt tcttattcac
      301 gatccaaaac ggagtccgcg tattaagcag tgagagctgc cacagatgaa cacggattag
      361 cacagatggg caaggaaagg tgcttagccg caattgagtt ctctttcagg ttatccgtgt
      421 ggatccgtgt tcatctgtgg cttacctgat cttggcccag caaccgcttt cgtttgacgc
      481 ccgcgcggcg tcgagcacca actgagtacg ataaccatct tcaaacgttg ccgcgccttc
      541 cacagtcgtg cggccttcgc gcaacgcttc aacgattttg cgtgagtacg cggtgaatcc
      601 gcgcgcccag ccgccgtcac gcattccgtt cgccaactcc ccgtgatcgg tctcgattct
      661 tttccattcg ccgtcgccga cctggcattg cgacaactcg ccgccttcct cgatcttcag
      721 cgcgccgcgc gagccgaaga tttccaatct atgccccggc tttccagctt cgaccatcga
      781 cagcgagacg ttgccggtcg cgccttctgt gagctcgccg tcagcaaatc tcaagagcaa
      841 gttcgcctcg tcatcagttg tgacttcgcg cacctcgccc gcttcgtctt tgcgtttgtg
      901 aacgtgcgtg gcaagattgc aaaatacttc cgcgacttcc gcgttcagca accaccgaaa
      961 accatcaatt acatgcgagc caatcgcgcc cagcgtaccg ccgcctttcg ttatgtcaga
     1021 ccaccagttc cagggacgat tcacatcggc gcgcgaatca gcacgaaaca gaagctttgc
     1081 gtgccgcacc ttgccgatgt cgccacgacg aagtaactcg tgcagcttca ctcggcctgg
     1141 aagaaatcgc agttcgtgat cgattagcgc cagcatgccg gcttcgcgcg cgcggtcggt
     1201 catccggcgc gcctcatcgg cattcatcgc catgggcttt tcgcacagca ctgcttttcc
     1261 ggctgcaagc gcggcgagcg tcatctcaca gtgtgtaacg actggggtaa caacactaac
     1321 cagatcaata tcgtcgcgag caatcagggc gcgccaatca gcttcgacgc gttcgattcc
     1381 aaactcgcgc gcgacctttt cggcgttttc gcgatatgcg ctggcaatcg ctacgatgcg
     1441 agcgccttcg cagttcttga acccaggaat ctgcgtggta cgcgcgaagc ctgttccaat
     1501 gattccaatg caaacaagac tattcgcagt catgattttt cgacgcttct ttctgacaag
     1561 aaatgaattt ggggcataaa cgagaacacg ccaatcggca gtcagtctta cacaatcgcg
     1621 ccattttcac attcaatgct ttgcaatggt cgagtgatta gagctttatg gtgggtcgct
     1681 gagctactta cgccgccacc taggagcgcg ctttgaggag cgtaggggtg actttctcgc
     1741 atttacggac agagaatcc
//
LOCUS       DASZZE010000045         9784 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_33989, whole genome shotgun sequence.
ACCESSION   DASZZE010000045 DASZZE010000000
VERSION     DASZZE010000045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9784
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33989"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1169)
                     /locus_tag="VHD88_00785"
     CDS             complement(<1..1169)
                     /locus_tag="VHD88_00785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20346.1"
                     /translation="MSNFDARFMKDEELHDLLEQWSVPEAPQSLDNRVTAAYNNLLGD
                     AAARPGSVLYPRRDSEVVTMKFCNTCQEQFADRFSFCPVDGTSLSAAPATPPSVTAHE
                     IESSYPVAETAAYERVETQAAIFESAATTSAAEAATSTARYGEYHVTILEDRGLMYRL
                     ASELGGVAHNYQLTWPEFKRDPFGFVKRSLQGYGQMAGSFFASRDVVIATVISLAAMV
                     ALVGAVFLLDRTQSTGVSRKSLVVVAVLAFCGLLAVFSTWLSRERGAAVMGAKPSDSR
                     NVLSGIVASFVLIFGVVGGLFFWDMHQKAKAAGTNPDDEWVVQNMIDIPNDQPTPDEG
                     TAGMAKGNGGGSKPKQEKAGGGGGGGREEKDPASMGKLPQADLRIPQVVAPDPHPP"
     gene            complement(1220..1804)
                     /locus_tag="VHD88_00790"
     CDS             complement(1220..1804)
                     /locus_tag="VHD88_00790"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HVS20347.1"
                     /translation="MADQLTDERLLEQAADGDGTAFQILYERYRDPIFRFAYRLLGST
                     EAAEDVAHDCFLSLIKEPGRFDSTRASLRTYIYAAARNLAAKRYNTFGRETAIEGLAD
                     ELRMSDRHEPIRLVLDNELATEVARAIASLPPLQREALVLFEYDELSLAEIAAVVGAD
                     SNTVKGRLFRAREKLRARLDRYLRIGRETASARR"
     gene            2209..3549
                     /locus_tag="VHD88_00795"
     CDS             2209..3549
                     /locus_tag="VHD88_00795"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HVS20348.1"
                     /translation="MLLPALANGQSAPEPDREKLLNGLTILLWHRPGDADVMVKLRIH
                     SGAAFDLAGKGGTMALLGDALFPDPATREYVAEQPGGRLEVATNYDEIDVTISGKADN
                     FERMVEMLRGAVVTTQLSPENVNTIRDARIKRLSEKPLTPAEIADQAIAARLLRKFPY
                     GHPAAGTVETLAKIDRGDLLLARERFLNADNATVVVIGGVEKARVMRTLRQLLGPWGK
                     GDRTVPATFRQPDPPDARVLIVSQPGATTAEIRLAVRGLARSDRDAAVASVLGRIARD
                     LWRLETGPELSSAFVRHESHSLPGIFVMGASVPTASASKAIASAQKVMSRLYQVAPSA
                     NELEGWRSAEFYELSHQSSQTDLIAELWLDSKTFKLASHNTQANAIRDVTPADIQRVA
                     ARLFKDASVATVVVGNYDQLKSSFDRNIELHSDKPDVKTSVVPATPTNTPAKKP"
     gene            3599..4318
                     /gene="ubiE"
                     /locus_tag="VHD88_00800"
     CDS             3599..4318
                     /gene="ubiE"
                     /locus_tag="VHD88_00800"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: protein motif:HMM:NF001244.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052624 - 2-phytyl-1,4-naphthoquinone
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0042372 - phylloquinone biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HVS20349.1"
                     /translation="MGLTEPEKKAPEDHARRVRKMFARISPRYDLLNHLLSANIDKRW
                     RRAVIRALRPQVPANAQLLDVACGTGDLSIELFENFGGPVVGLDFCRPMLELAAVKAA
                     QLSFVEGDALQLPFADSSFDAVTIGFGLRNLSSVERGLSELRRILKPQGWVAILEFSR
                     PSVPGFRALVSVFYKHLLPRLGGWISGSRSAYEYLPDSISRFPDQRTLAAMMRAAGFD
                     KVSFRNLTGGVVALHTGQRSR"
     gene            4569..5561
                     /locus_tag="VHD88_00805"
     CDS             4569..5561
                     /locus_tag="VHD88_00805"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HVS20350.1"
                     /translation="MKHKLFGVLRRVGFLVLVVWTVVSLVTLLIELVPGDPAIAVLGD
                     QATPEQLIQFRAKHGLDRPPFFFGFPNDENGRHHFHWYGLDNRYDDYWIAILHGDLGT
                     SFRTDRPVFDLILERYPATIELAIAAMAIAVCIAIPLGVIAGKNRGTLTDNALSVVAL
                     VGISLPGFVIGPMLVYVFAVKLGWLAPSGRFDWSDIILPAFTLGAALSAILTRMVRSS
                     VIEELHENYVRTARAKGLSERTVVYKHVLKNGLIPVVTVLGLQLGVLLAGAIITEKIF
                     GWPGLGLLLVEDGIGKRDYGVVQGCVLAISTTYIIANTLTDVIYRWLDPRIRIQ"
     gene            5625..5804
                     /locus_tag="VHD88_00810"
     CDS             5625..5804
                     /locus_tag="VHD88_00810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="four helix bundle protein"
                     /protein_id="HVS20351.1"
                     /translation="MLLVRGMYVLTRGFPSDERFGLISQIRRAAVSVPSNIAEGQRVI
                     QQESSFNSFHTPKVL"
     gene            5988..6821
                     /locus_tag="VHD88_00815"
     CDS             5988..6821
                     /locus_tag="VHD88_00815"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HVS20352.1"
                     /translation="MSLVTCMNRLAIIGLVIVVVFVAIAILAPWIATHDVGATNLSIR
                     YMAPSAAHWFGTDSTGRDIFSRVVFGARISLKVGIVVVVVSTLVGTIIGAVAGYYGGW
                     VDRFLSGYLFNVFLAFPGLLLAIALVAFLGAGLNKLIFALCIIGWVGYARLIRAQVLK
                     VREYDFVQAARALGAGDFRILFVHILPNAIQPLIVQASLGMAGAVLAEASLSFLGLGV
                     PPPSPSWGVMIEEARDLSTLQAAPHALIFPGLAIALTVLAFNFIGDGLREYLDPRQRR
                     R"
     gene            6833..7915
                     /locus_tag="VHD88_00820"
     CDS             6833..7915
                     /locus_tag="VHD88_00820"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HVS20353.1"
                     /translation="MSSAAQNSASRSRDNANGLVAVSIERLSKTYPVAFLRLKKFLRR
                     KFKPPVEALRDVSFNVHEGEIFGLIGPNGAGKTTLTKIIATLVQPTSGQVLVKGHDSV
                     RNDQEVRRNVGLAGAEERSFYFRLTAEQNLLFFARLYGLNSLAAKRRINELLALLELE
                     ELRARRYAELSTGNKQRLSVARAMLANPPVLLLDEPTRSLDPIAAARMRALIKSLAQN
                     DGQRTSVFLTSHNLAEVEELCDRVAIIGKGEIRALDTPQNLRALHTQNEQVSIDFTSL
                     NAADAERALAQAFSDRFFSLDRSAREDECVVKFSREAGDKMLDGVLRVLQQSGAVICA
                     VETERATLLDVLESYEQDGKGSEAQT"
     gene            7912..8742
                     /locus_tag="VHD88_00825"
     CDS             7912..8742
                     /locus_tag="VHD88_00825"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HVS20354.1"
                     /translation="MNQAVLFLRRIRAFLARDWRLTVSYRMQSFLRILSILIVVTTLF
                     FISKIFTGFADPRFAQWRDPLAAWLTGLAVLNYFMTGFSSLANAIRQEQVQGTLESVL
                     MTPISVPTVIVASSAWDFVQATLYSFLYLLFGWLFFDVHYRGNFLLALGFLVLTTMVL
                     SCLGILSASFAMVFKRGDPFGVFLGTGSALFSGVFFPTQLISQYAGTGVGSISRILPP
                     TYGLDGIRRVLIEGQGFSEVREPFVTLLVFLAVLLPFSLWVFGRAVRRAKREGSLIQY
                     "
     gene            complement(8918..>9784)
                     /locus_tag="VHD88_00830"
     CDS             complement(8918..>9784)
                     /locus_tag="VHD88_00830"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HVS20355.1"
                     /translation="PAVVMDRNGRYFANLRKEDFSIYEDGVEQSVAYFASVEKPFTVA
                     LMLDVSGSTQFQLSQIRDAANTFVSRLRPNDRLMAITFDGQVHVLTEPESVSAIRQTK
                     LHIPAVVNGTVLYDAVDLALKKIAQIPGRKAIVLLTDGVDQNSRASLKGTLSDIAEAD
                     VLVYTVQYNTLSQLPQRLSVNKNEKARRKVQERLMKGYAVSEPYLRALAEKTGGRFYR
                     ADALRDVGPAFEAITSELGVQYSLGYYPKENSSASTQRAIKVRVRYPNLVVRARDSYS
                     TGTTIAKQSGAN"
BASE COUNT         1968 a         2753 c         2750 g         2313 t
ORIGIN      
        1 ggaggatgcg gatcgggtgc gaccacctgc ggaattcgca aatcggcttg cggcagtttg
       61 cccattgaag cagggtcctt ctcttcacga ccaccgccgc cgccgccgcc ggctttctct
      121 tgttttggtt tgctgccgcc gccgttgcct ttggccattc cggccgtgcc ctcgtcagga
      181 gtcggctgat cgtttggaat atcgatcatg ttctgcacga cccactcatc gtcagggttt
      241 gtccccgcag ccttcgcctt ctgatgcatg tcccagaaga acaggccccc gacaactcca
      301 aagatgagca cgaatgaagc cacgattccg gagagcacat tgcgtgaatc tgacggcttc
      361 gcgcccatca ccgcggcgcc gcgttcacga ctcagccagg tcgagaaaac tgcgagcaag
      421 ccgcagaacg ccaacaccgc aaccacgacc aggctcttgc gtgagactcc agtcgattgc
      481 gtgcgatcca gcaggaagac agcgccaacc aatgcgacca tggccgccag cgagatcaca
      541 gttgcgatca caacgtcgcg actcgcaaag aagctcccag ccatctggcc gtacccttgc
      601 aaggaacgct tgacgaagcc gaacggatcg cgtttgaact cgggccaggt cagttgatag
      661 ttatgcgcga ctccaccaag ctcactcgcg agtcgataca tcaggccgcg atcttcgaga
      721 atcgtcacgt gatattcgcc gtacctggcc gtgctcgtcg ctgcttccgc cgccgaagtt
      781 gtcgctgcgc tttcaaagat cgccgcctgt gtctcgaccc gctcataggc agcggtttcc
      841 gcaaccggat atgaactttc gatttcgtgc gcggtcacgc tcggtggagt agccggtgcg
      901 gcgctcagcg acgttccgtc aacgggacag aaactaaacc tgtcggcaaa ctgttcctgg
      961 catgtattgc agaatttcat cgttactacc tcgctatccc gtcggggata aagtactgag
     1021 cccggccgcg cggccgcgtc gcccaataga ttgttatacg cagcggtcac gcgattgtct
     1081 agtgattgcg gcgcttcggg aacgctccac tgttccaaca gatcgtggag ttcttcgtcc
     1141 ttcatgaacc gcgcgtcaaa gttactcatg gtaattctca attgctcgaa aaagctcggc
     1201 acagggttag cgccttgcgc tatcttcgag ctgaagcagt ttcacggccg attcgcaaat
     1261 atcgatcgag cctggcccta agcttttcgc gggctcgaaa caaacgccct ttcactgtgt
     1321 tcgagtcagc gccgactacg gcagcaatct cagccagcga aagctcatcg tactcgaaaa
     1381 gaaccagcgc ctcgcgttgc aaaggcggca gactcgctat cgctcgtgca acttccgtcg
     1441 cgagttcgtt atcaagcacc agcctgatcg gctcatgacg gtctgacatg cgaagctcgt
     1501 ccgcaagtcc ctcgatcgcc gtttcgcgtc cgaaggtgtt gtatcgtttc gccgccaggt
     1561 tgcgcgccgc tgcatatata tacgtgcgca gcgaagctct cgtggaatcg aaacgaccgg
     1621 gctcttttat caaactcaga aagcaatcat gcgcgacatc ttccgccgct tcggttgagc
     1681 ccaaaagccg ataggcaaat cgaaagatcg gatcgcgata acgctcgtac aggatctgaa
     1741 aagctgttcc atctccgtcc gctgcctgtt ccagcagcct ttcgtctgta agctgatccg
     1801 ccaatcaaag cgctcgatcc tgtaggaact agcttcctag tgtttattac tgctaatcgc
     1861 caggaagtta cggaaaaagt ttacgggctg aatgaattct ctcaaagcac tgtgattata
     1921 ctatcgttta gttcgttttg agcactctgg accgtccgcc accgcgcggc cggtcacgag
     1981 ctttgatgcc gcgaacgccg ctcaggttga cgcagtttca gcgcggcatc taaactcttt
     2041 ttcgccgcat cccagaaggc ttttttggga tcctcggcat tccaacgaac cgatagttca
     2101 cgctagtcac atcaatcgcg gtccgagatt cttttcctga tgattcacga aaacaccaga
     2161 cgcccacact ttcaggttct tggcctactc tccgtcctga ttgcacttgt gcttttaccg
     2221 gcgctggcga acggtcagtc cgctcccgaa ccagatcgtg aaaagctcct gaacggcttg
     2281 acgattctgt tgtggcatcg gccgggcgat gcagatgtaa tggtaaagct gcgcattcac
     2341 agcggcgcgg cgttcgatct ggcaggtaaa ggcggcacga tggcgttgct cggcgatgcg
     2401 ctgtttcccg atcccgcgac tcgggagtat gtcgccgaac aacccggcgg gcgactcgag
     2461 gtggcgacga attatgacga gatcgatgtc acgatttccg gcaaagccga caactttgaa
     2521 cgcatggtcg agatgttgcg cggcgccgtc gtgaccacac aattgtcgcc ggaaaacgta
     2581 aacacgattc gcgacgccag aatcaagcgt ctttcggaaa agccgctgac gcccgctgag
     2641 attgctgatc aggcgatcgc ggcgcgactg ctcaggaagt ttccctacgg tcatccagca
     2701 gccggaaccg tcgagacgct cgctaaaatc gatcgcggtg atcttttgct ggcgcgcgaa
     2761 cgttttctca acgccgacaa cgcgacggta gtggtaattg gaggagttga aaaagcacgc
     2821 gttatgcgca cgttgcgcca gctactcggg ccgtggggca aaggcgatcg cacggtgccg
     2881 gcaactttcc gtcagccgga tccaccggac gctcgcgttc tgattgtgag tcagccgggc
     2941 gctacaaccg ccgaaattcg tctagcggta cgcggcttgg cgcgttctga tcgcgacgcg
     3001 gccgtagcgt cggtattggg gcgcatagcg cgagatctct ggcggcttga aaccgggccc
     3061 gaactctcgt ccgctttcgt gcgtcatgaa tcgcactcgt tgcccggcat ttttgtgatg
     3121 ggcgcgtcgg tgcccactgc gtccgcatcg aaagcaatag cctcggcaca aaaagtgatg
     3181 agtcgactgt accaggtagc accatcggct aacgaactcg aagggtggag gagcgcagag
     3241 ttctatgagc tctcacatca aagctcgcaa acagacttga ttgcagagct gtggttggat
     3301 agcaaaactt tcaaactggc ttctcacaac actcaggcta acgcaatccg agacgttacg
     3361 ccggcagata ttcaacgcgt cgcagccaga cttttcaaag atgcttcagt agcgacggtc
     3421 gtggtcggca actatgatca actcaagtca agtttcgatc ggaacatcga gctgcacagt
     3481 gacaaacccg atgtgaaaac ctcggtcgtt cccgcgacgc cgacaaatac gccggcaaaa
     3541 aagccctgat agatttacaa acctatcgca agccgcctgc aaccatcgcc ctaccaccat
     3601 gggcttaact gaacccgaga agaaagcacc agaagatcac gctcggcggg tgcgcaaaat
     3661 gttcgcgcga atttcgccgc gatacgatct gctgaaccat cttctgtcgg cgaatatcga
     3721 taagagatgg cgacgggcgg taatcagagc gttgcgcccg caggtgccgg ctaacgcaca
     3781 gcttcttgat gtcgcctgcg gcaccggcga tttaagtatt gagttgtttg aaaactttgg
     3841 cggaccagtc gtcggcctcg atttttgtcg gcccatgctt gagcttgcgg cggttaaggc
     3901 tgcgcagctt tcttttgttg aaggagacgc gctgcaactt ccgttcgcgg attcttcatt
     3961 tgacgccgtt acgatcggct tcggacttag aaatctctct agcgtcgagc gaggtctcag
     4021 cgaactgcga agaattttga agccgcaagg atgggtcgcg attcttgagt tctcgagacc
     4081 gtccgtgccg ggatttcgcg cgttagtgtc ggtcttctac aagcatttgt tgccgcgact
     4141 cggtggatgg atcagcggtt cgcgcagcgc ttacgagtat ctgcctgatt cgatttcgcg
     4201 ttttcccgac cagcggacgc tcgccgcgat gatgcgcgcc gcgggttttg acaaagttag
     4261 ttttcggaac ttgactggcg gtgtggtggc gctccacacg ggtcagcgtt cgcggtagcg
     4321 actcaagacg agattgattg cagccaattt ggtggcagcg atcaaaacaa cgtagtccgt
     4381 ggggctcgct taaccagtga gggtgcggtt gtcggggctg cgccctgaca caacggagac
     4441 agcgagtccc aaccgggcta cgttcgtttt ttgcctcatt tgcctcactt gaacatagcc
     4501 gcctcgcggc caatctgcta tcatccgcgc tcgttccttc aaaaaagttc acacgccttt
     4561 ctcattagat gaagcacaaa ttgtttggag tgttgcgccg cgtaggcttt ctggtgctgg
     4621 tcgtgtggac tgtcgtttcg ctcgtcactt tgctgatcga actcgtgccc ggcgatccgg
     4681 cgatcgcggt tcttggcgat caagcgacgc ctgaacagtt gattcaattc agggctaagc
     4741 acggcttgga tcgcccaccg ttcttcttcg gttttccgaa cgacgagaat ggccggcatc
     4801 attttcactg gtacggcctc gacaatcgct acgacgatta ctggatcgcg atcctgcacg
     4861 gcgatctcgg aacttcgttt cgcaccgacc ggccggtttt tgatcttatt cttgagcgat
     4921 acccggcaac gattgaactc gctatcgcag cgatggccat cgccgtgtgc atcgcaattc
     4981 cgctgggcgt gattgcggga aagaatcgtg ggacgctgac cgacaacgcg ctgtccgtgg
     5041 tcgcgttggt cggcatcagt ctgcccggtt tcgtaatcgg gccaatgctc gtttacgtgt
     5101 tcgcggtaaa gcttggctgg ctggcgcctt cgggccgctt cgattggagc gacatcattt
     5161 tgcccgcgtt cactttgggc gcggcgctat cggcgatcct gacgcgaatg gtgcgctctt
     5221 cggtgatcga agaactgcac gaaaactatg tacgcacggc gcgcgcaaag ggattgagcg
     5281 aaaggaccgt tgtctataaa cacgttttga agaacggctt gattcccgtc gtcacggttc
     5341 tggggttgca actcggagtc ttgcttgccg gcgcgatcat caccgaaaag atttttggct
     5401 ggccgggtct gggtttgttg ctcgtcgaag acggcatagg caaacgcgac tacggcgtag
     5461 tgcagggctg tgtgctcgcg atcagcacga cttacatcat cgcgaacacg ctgactgatg
     5521 tgatttatcg ttggcttgat ccaagaataa gaattcagtg ataagtgacg agcaaagaag
     5581 caaaaccccg tggctacaga gatctaatcg tgtggcaaaa ggctatgctg ctcgtgcgag
     5641 gcatgtacgt tcttactcga ggttttccgt cggatgaaag atttggtctc atatcacaaa
     5701 ttcgtcgtgc cgcggtatcg gtgccttcaa acattgccga agggcagcgc gtcattcaac
     5761 aggagagttc attcaattcg tttcatacgc cgaaggttct ctagctgaac ttgacacgca
     5821 gctcagtatc gctattgacc tggagtattg cactatcgca gaggcggaat cgcttttcat
     5881 gctgctcgcg gaactgagaa ggatgctcaa cgcattaagg agaaagcttc agggaatgtg
     5941 acggcgcctg gtctgttgct cgtcacttgt cacttgtcac tcgtcacttg tcactcgtca
     6001 cttgcatgaa tcgactcgcc atcattggtc ttgtgatcgt cgtggtcttc gtcgcgatcg
     6061 cgatcttagc gccgtggatc gcgacgcatg acgtgggcgc gacgaacctt tcgattcgct
     6121 acatggcgcc gtcggcggcg cattggtttg gcacagactc gacggggcgc gacattttct
     6181 cgcgcgtcgt ttttggagcg cgcatctcgc ttaaggtcgg catcgtcgtc gtcgtcgttt
     6241 cgactctggt aggaacaatc attggcgctg tcgccggtta ctacggcggc tgggtcgatc
     6301 gatttctgtc gggctacctc ttcaacgtct ttctcgcttt tcccggcctg ctgttggcga
     6361 tcgctttggt cgcttttctc ggcgcgggat tgaacaaatt gattttcgcg ttgtgcatta
     6421 tcggctgggt cggttacgcg cggctgattc gcgcgcaggt tttgaaggtc cgcgaatatg
     6481 atttcgtgca agccgcgcgc gcgctgggcg cgggtgattt tcgcattctg tttgtgcaca
     6541 ttctgccgaa cgcgattcaa ccgctgattg tgcaagcgag tctgggaatg gccggagcgg
     6601 tgcttgcgga agcatcgctt tcattcttag gtctcggcgt gccgccgcca tcgccgtcgt
     6661 ggggcgtgat gatcgaagaa gcgcgcgacc tttcgacgct gcaagctgct ccacatgccc
     6721 tgatttttcc gggactggcg atcgctctca ccgtgctggc gttcaatttc atcggcgatg
     6781 ggctgcgcga atatctcgat ccgcgacaac gccggcggta gtcgtctctc ctatgtccag
     6841 tgccgcacag aactcagcca gtcgttctcg cgacaacgcc aacgggctcg tcgcggtctc
     6901 gattgaacgc ctctcgaaaa cctatcccgt cgcgtttctt cgtctgaaaa aattcttacg
     6961 ccgcaagttc aagccgcccg tcgaagcgct gcgcgacgtt tcgttcaacg ttcacgaagg
     7021 cgaaatcttt ggtcttatcg ggccaaatgg cgcgggcaag accacgctca cgaagattat
     7081 cgccacgctg gttcagccga catctggaca agttttggtc aaaggccatg acagcgtgcg
     7141 caacgatcaa gaggtgcgac gcaacgtcgg cctggccggc gcggaagaaa gaagtttcta
     7201 tttccgcctg actgccgaac agaatcttct attcttcgcg cggctttacg gcctgaacag
     7261 cttggcggca aagcgaagaa ttaacgaact cctcgcgctt ctcgaattgg aagaactccg
     7321 cgctcgccgc tatgccgaac tttcaaccgg caacaagcag cgcctgtcag tcgcgcgcgc
     7381 catgctggcg aatcctcccg tcctactgct ggacgagccg acccgttcgc ttgatcccat
     7441 cgcggccgcg cgaatgcgcg cactgatcaa gtcactcgcg cagaacgacg gtcaacgaac
     7501 atctgtcttt ctcacttcgc acaatcttgc cgaggtcgaa gagctttgcg atcgcgtcgc
     7561 cataatcggc aaaggcgaaa ttcgtgcgct cgacacgcca caaaacctgc gcgcgctgca
     7621 cacgcagaac gaacaggtct cgatcgattt cacgtcgttg aatgccgctg acgccgaacg
     7681 cgctctcgct caggcgttca gcgatcgatt cttcagtctg gacaggagcg cgcgcgaaga
     7741 cgaatgcgtc gtcaagttta gtcgcgaagc cggcgacaaa atgcttgatg gcgtgctgcg
     7801 cgtcttgcag caaagcggcg cggtgatttg cgcggtcgaa actgagcggg ctacgctgct
     7861 cgatgtgctc gagagttatg aacaagacgg caagggatcg gaggcgcaga catgaaccaa
     7921 gctgtcttgt ttctgcgacg catccgagcg ttcctcgcgc gcgattggcg cctgaccgtc
     7981 agctaccgca tgcaatcctt tctgcgcatt ctgtccattt taatcgttgt cacgacgctc
     8041 tttttcattt caaagatttt taccggcttt gccgatccgc gtttcgcgca gtggcgcgat
     8101 cctttggcgg cgtggctgac tggactggcg gtgctgaatt atttcatgac cggcttctca
     8161 agtctggcga acgcaattcg gcaggagcag gtgcaaggga cgctcgaaag cgttctgatg
     8221 acgccgatca gcgtaccgac ggtaatcgtc gccagctccg cgtgggattt cgtgcaggca
     8281 actctatatt cgtttctgta cctgcttttc ggctggttgt tctttgacgt gcactatcgc
     8341 ggaaattttc tgctggccct tggttttctc gtgctgacga cgatggtgct ttcgtgtctc
     8401 ggaattcttt cggcgagctt tgcgatggtg ttcaagcgcg gcgatccgtt tggagttttt
     8461 cttggcacgg gctcggcgtt gttttcaggt gtgttctttc ccacgcagct tatctcgcaa
     8521 tacgcgggca cgggtgtggg cagcatctcg cgcattctgc cgccgactta tggactcgat
     8581 ggaatccgcc gggtgctaat cgaaggacaa ggcttttctg aagtgcgcga gccgttcgtt
     8641 acgctgctcg tctttctggc agtgctgctt cccttctctc tgtgggtctt tggccgcgcg
     8701 gtgcggcgcg cgaaacgcga aggaagcttg attcagtatt aggttagcgg ggaagaaagc
     8761 cacagagacg cgaagtcaca gagacaggaa taaggctaat tcacaaagcg gttataatcc
     8821 tctttgcgcc tttcgacttt cttggcgtct ttgcgtgaaa tgtattttcg ctgcgtcgta
     8881 gttcacgcaa aggcacaaag gttctgaagc ggaaggtcta attggcaccg ctctgtttcg
     8941 cgatggttgt gccggtggaa taactgtcgc gcgcgcgcac gacgaggttg ggatagcgca
     9001 cgcgcacttt gatcgcgcgc tgcgtgctcg cgcttgaatt ctctttcggg taataaccga
     9061 ggctgtattg cactccgagt tcggacgtga tcgcttcgaa cgcggggcca acgtcgcgca
     9121 gggcgtcggc acgataaaag cgaccaccgg tcttttcagc caacgcgcgc agataaggtt
     9181 cgctcactgc gtagcctttc atcagacgtt cctgaacttt gcgccgcgct ttctcgttct
     9241 tgtttacgct cagacgctgc ggcagttgcg acagcgtgtt gtattgcacg gtgtaaacca
     9301 ggacatccgc ttcggcaatg tcgctcagcg tgcccttcaa agacgcgcga ctattctgat
     9361 cgacgccgtc cgtcaagagc acgatcgctt tgcgaccggg aatctgggct attttcttca
     9421 aagcaagatc aacggcatcg taaagcaccg tgccattaac gacggcggga atgtgaagtt
     9481 tggtttgacg aattgcgctg acgctctctg gttcagtcag aacatgcacc tggccgtcga
     9541 acgtgattgc catcaaacga tcgttcggtc tcagccggct gacgaacgtg ttggcggcgt
     9601 cacgaatttg cgagagttga aactgagtcg agccgctcac gtccagcatc aacgccaccg
     9661 tgaaaggttt ttccaccgac gcgaaatacg cgacgctttg ttcgactccg tcctcgtaga
     9721 tgctaaagtc ttctttgcgc aggttcgcga agtaacggcc attgcgatcc atcacgaccg
     9781 cagg
//
LOCUS       DASZZE010000046         2629 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_147376, whole genome shotgun sequence.
ACCESSION   DASZZE010000046 DASZZE010000000
VERSION     DASZZE010000046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2629)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2629)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2629
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147376"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..489
                     /locus_tag="VHD88_00835"
     CDS             <1..489
                     /locus_tag="VHD88_00835"
                     /inference="COORDINATES: protein motif:HMM:NF014799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase C-terminal domain-containing
                     protein"
                     /protein_id="HVS20356.1"
                     /translation="DDPVIFIEQERMYGMKGEVPEDEDFTIPLGVAEVKREGTDATIV
                     ARSLMVPAALKAAEELERDGVSCEVIDPRTIRPLDIGTIVMSVKKTNRVVIAEESHPF
                     CGVGAEISAQINERAFDYLDAPVKRVSGADVPMPYAKNLEQLAIPSFEQIVAAVREVS
                     YL"
     gene            565..1878
                     /locus_tag="VHD88_00840"
     CDS             565..1878
                     /locus_tag="VHD88_00840"
                     /EC_number="2.3.1.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR01349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045254 - pyruvate dehydrogenase complex
                     [Evidence IEA];
                     GO_function: GO:0004738 - pyruvate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0004742 - dihydrolipoyllysine-residue
                     acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex dihydrolipoamide
                     acetyltransferase"
                     /protein_id="HVS20357.1"
                     /translation="MATQIVMPKLSPTMEEGQLARWLKKEGDKVSMGEPLAEIDTDKA
                     TMEMQALSNGVLRKILIQEGESAPLGQPIAIIGEPDEDISSLLKATGEKAPKTTATSE
                     AKEAEQPPEDTKPVPSQTSAPAKESEAAVQPSRDGGRQLVSPIAARMAADAGVNLSSL
                     KGSGPGGRIIKRDIETAISENKPSASAAPKLRAAAPSRPAEKGAVYGPSFYRDEPVSE
                     MRRTIARRLVMSLGPVPHFFITTEIDMERAADMRRSINELFPEVKLSINDIIIKVTAA
                     ALMQHPQVNASFQDKTVRYYEHADLGIAVATENGLITPVVRSADLKSLLEIAGEVREL
                     ATRARARKLKPEEYTGASFSISNLGMFGIDEFTAVINPPEGAILAVGAMAPKPVVKDG
                     QIVIRQTMRVTMSCDHRVIDGATGAQFLQTFKQILENPLYLFLNQ"
     gene            2192..>2629
                     /locus_tag="VHD88_00845"
     CDS             2192..>2629
                     /locus_tag="VHD88_00845"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HVS20358.1"
                     /translation="MTNKSTDIAVNHVGASVAAPHVALIAVQIMFGTWPIVGKIVLHS
                     LPSMGLVSLRIAGAALAFVLIGRMTGGVGRIRRQDWWLLALSSVLGVVLNQLLFVKGL
                     SITTAINSTLLGTTIPVFTLLVSVALRTDRASLRRVIGIALSAS"
BASE COUNT          593 a          730 c          767 g          539 t
ORIGIN      
        1 gatgatcccg taatcttcat agaacaggaa cgaatgtacg ggatgaaagg cgaagtgcct
       61 gaggacgaag atttcacgat tccgctcggt gtcgccgagg tgaagcggga agggacggac
      121 gcaaccattg tcgcgcgctc cctgatggtt ccggcggcat tgaaagcagc agaagagctt
      181 gagagagatg gagtctcgtg cgaagtcatc gacccgcgca cgattcgacc actggacatt
      241 ggcacaattg tgatgtcagt gaagaagaca aaccgcgtcg tcatcgccga agagtcgcat
      301 ccgttctgcg gtgtcggcgc tgaaattagc gctcagatca atgaacgagc gtttgattat
      361 ctcgacgcgc cggtgaagcg cgtgtcgggc gcggatgtgc cgatgcctta cgcgaagaac
      421 ctcgagcagc ttgcaattcc gagctttgaa caaatcgtcg cagccgtgcg cgaagtttct
      481 tatttgtagg tagtctctgg ttaactgtcg caggctgttt ggattgactg ccaaccgctc
      541 actgcttact gctcactaac gaaaatggca acacaaatcg taatgccgaa gctttcgccc
      601 acgatggaag aagggcagct tgcgcgctgg ctcaagaaag aaggcgacaa ggtttcgatg
      661 ggcgagccgc tcgctgaaat cgacaccgac aaagccacga tggagatgca ggcgctctca
      721 aacggcgtcc tgcgcaagat tctgattcag gaaggcgaaa gcgcgccgct cgggcagccg
      781 atcgcgatca tcggcgagcc ggatgaggac atttcttccc tgctgaaagc gactggagag
      841 aaagctccga agaccacagc gacgtccgaa gctaaagaag ccgagcaacc cccagaagac
      901 acgaaacctg tgccgtcgca aacctcagct ccagcaaagg aaagcgaggc tgccgtccaa
      961 ccttcacgag atggcggtag gcagttggtc tcgccgatcg cagcgcgcat ggccgcggac
     1021 gcgggcgtca atctaagttc gctgaaaggt agcggcccgg gcggacgaat catcaagcgc
     1081 gacattgaga ctgcgatcag cgaaaataaa ccttccgcgt ccgccgctcc gaaattgcgc
     1141 gccgcggctc cctcgcgacc tgctgagaaa ggcgctgtgt atggcccatc gttttatcgc
     1201 gacgagccag tcagcgaaat gcgtcgcacg atcgctcgcc gcctggtcat gtcgctcggc
     1261 ccggtgccgc atttctttat cacaacggaa atcgacatgg agcgcgccgc ggatatgcgg
     1321 cggtcaatca acgagctgtt tcccgaggtc aagctcagca taaacgacat catcatcaag
     1381 gtcaccgccg ctgctttaat gcaacacccg caggtcaacg cttcgtttca agacaagacg
     1441 gttcgatact acgagcacgc ggaccttggc attgccgtcg caaccgagaa tggattgata
     1501 acgccggtcg tgcgctccgc ggatttgaag agcctgcttg agatcgccgg cgaagttcgt
     1561 gaattagcga cgcgcgcgcg tgcgcgcaag ctgaagcccg aagaatatac gggcgccagt
     1621 ttctcgatca gcaacctggg catgttcggc atcgacgagt tcactgccgt gatcaatccg
     1681 ccggaaggcg cgatcctggc cgtcggcgcc atggccccaa agccggtcgt gaaagacggc
     1741 caaatagtaa ttcgccagac gatgcgagtg acgatgtctt gcgaccatcg cgtcatcgac
     1801 ggcgccaccg gcgcgcagtt tttgcaaacc ttcaaacaga ttctggagaa cccgctttac
     1861 ttgtttctga atcagtaagg cgctccgagc tagtggcctg tatcattgaa attgctagcg
     1921 tcagctgccg cgctcgcgtc ttattcacac ctatcttcag ataggtgatg aaagtggacg
     1981 cagatttccg gaaccgtttc aacggtttgc ggctgcgccg gagaaaccgt ttaaacggtt
     2041 tcagaaggtt accgaacgtt ctcgacaccc agctaaaagc agggtgtgaa tgggaagtcg
     2101 ctagcgaagc ctctgttaca ggccactagt ttcagattca cggatcggga cgtggcccga
     2161 tcttttttgt gcgcgtcata tctcatcctg ggtgactaac aagtcaacag atattgccgt
     2221 caatcacgtt ggggcgagcg tcgccgcgcc gcacgtcgct ctaattgccg tgcaaatcat
     2281 gttcggaacg tggccgatcg ttggaaagat tgtcttgcac agcctgccca gtatgggcct
     2341 cgtttcactt cggatagccg gcgccgctct agccttcgtg ctgatcggac ggatgaccgg
     2401 cggtgttggg cgaatcagga gacaggactg gtggctccta gctctatcaa gtgtcctggg
     2461 cgtcgtgctg aatcagttgt tattcgtaaa gggtttgtcg atcaccacgg cgatcaactc
     2521 cacgttgctg ggtacgacga ttcccgtttt cacgctcctg gtcagcgtag ccttgcggac
     2581 agatcgcgcg tcgctgcggc gcgtgatcgg catcgcgctc tctgccagc
//
LOCUS       DASZZE010000047         2528 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_147411, whole genome shotgun sequence.
ACCESSION   DASZZE010000047 DASZZE010000000
VERSION     DASZZE010000047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2528)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2528)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2528
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147411"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..350
                     /locus_tag="VHD88_00850"
     CDS             <1..350
                     /locus_tag="VHD88_00850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20359.1"
                     /translation="EVFVAENMAQALGRMREERMDIVILDASFDPVEQGVAFVTREVK
                     VMRPSERRRLFFVYLTSGVRTMDLHAAFLHNVNLVVNPSDLDQLPDALEVSLRHYNEL
                     YRDFSRALDVAPI"
     gene            complement(360..2036)
                     /locus_tag="VHD88_00855"
     CDS             complement(360..2036)
                     /locus_tag="VHD88_00855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20360.1"
                     /translation="MEESKRRFGNGDAKVQRALRLLSKSRLTDAESLIRFHETLLFLR
                     AYPPSAKVLKKVEESLKPFAWRVVQLRDAEADLSPLDDPEVSGIAGTTVTSNFSYEIV
                     RWLVAKYPRQVSIDWDWFEEEDRFGSTMPRFLPLLEEDAMVEAHVPYRDCLRAAIGRG
                     LNIGGELAWLIKRFESLNIPDKAKAALYDSLKLHVSWKFAFRASRTGMRLPVRKTFLH
                     EKPLIQRRDVSLIEALASPPIPGERLSRVAGEKILDLARATSAVRYRELHGFTYGDAR
                     RVFKAHLGRGVDIFMMGVPPERRLPLRAYHSALIFKNRVPVAYFEGLSIFERMESGFN
                     LYYTFREGETAWIFARVLRLMRQLLGVTVFLIDPYQIGHENEEGIESGAFWFYRKLGF
                     RPVRPELMKLALAEEPKIALNPGYRTPARTLRKLAAGHMLFEMPNTGPANHRDWDRFE
                     VRNLGLAVQRRMARDFNGDAARIRADSIKFVKRALDINTHRWSEAELLALDNLALALA
                     MIPEITRWSSSDKELAARIIDAKAGRDEALYLRLMQKHSPLRASLIRLGS"
BASE COUNT          571 a          729 c          673 g          555 t
ORIGIN      
        1 acgaagtgtt cgtcgctgag aacatggccc aggccctggg acgaatgcgc gaggagcgaa
       61 tggacattgt gattctcgac gcgagtttcg atcccgtaga gcagggcgtg gctttcgtca
      121 cgcgcgaagt caaggtaatg cgcccgtccg agcgccgccg tctgttcttt gtttatctaa
      181 cttccggcgt ccgcacgatg gatctgcacg cagcttttct gcacaacgtc aatctcgtcg
      241 tcaatccttc cgatctcgat caactgccgg acgcgctcga agtctctctc cgccattaca
      301 acgaactata tcgcgacttc agccgcgcgc tcgacgtcgc cccgatctag caatctgagt
      361 tacgagccca accggatcaa agaagcacgc agaggcgagt gcttttgcat cagtctgagg
      421 taaagagctt cgtcgcggcc agccttggca tcgatgatgc gcgcggcgag ttccttatcg
      481 ctcgaactcc agcgagtgat ttcgggaatc atggcgagcg ccagcgcgag gttatcgagg
      541 gccagcagct ccgcttcact ccatcgatga gtgttgatat cgagtgcgcg cttgacgaac
      601 ttgattgagt cggcgcgaat cctcgccgcg tcgccattga agtcgcgcgc catgcgccgc
      661 tggactgcta gtccgagatt gcgaacttcg aatcgatccc aatccctgtg attagccggg
      721 ccggtgttcg gcatttcaaa cagcatgtgg cctgcggcaa gttttctcag cgtgcgcgcc
      781 ggcgtgcggt agccaggatt caacgcgatc ttcggttctt cggccagcgc taacttcatc
      841 aactctggcc ggacgggacg aaagcctagc ttgcgataaa accaaaacgc gcccgattca
      901 atcccttctt cgttttcgtg gccaatctga tacggatcga tcaaaaagac ggtcactccc
      961 aaaagctgtc gcatcaaccg cagaacgcgt gcgaagatcc aggcagtctc tccttcacga
     1021 aacgtgtagt agagattgaa gccgctctcc attcgctcaa agatcgacaa gccttcgaag
     1081 tatgcgaccg gcacgcgatt cttgaaaatt agagcggagt gataagcgcg cagcggcaga
     1141 cgccgttcgg gcggcacccc catcatgaat atgtcaacac cacgaccgag atgagctttg
     1201 aaaactcgac gcgcatcgcc gtaagtgaaa ccatgcaact cgcgatagcg gaccgcggaa
     1261 gtcgcgcgcg ccaggtcgag aatcttttcg ccggccacgc gagaaagtct ctcacctggg
     1321 attggcggcg aggcgagtgc ttcgatcagc gatacatcgc gacgttgaat cagcggcttt
     1381 tcatgaagga aagtcttgcg cacaggtaat cgcattcccg tgcgcgatgc gcgaaaggca
     1441 aacttccagg agacgtgcag cttgagcgaa tcataaagcg cggccttcgc cttgtctgga
     1501 atattcagag actcaaagcg cttgatcagc cacgccagct cgccgccgat attcaggccc
     1561 cgaccgattg ccgcgcgcaa gcagtcgcga taaggcacgt gcgcttcgac catcgcgtct
     1621 tcttcgagca atggcaaaaa tcgtggcatg gttgagccga atcgatcttc ttcttcaaac
     1681 caatcccaat caatcgaaac ctgtctcgga tatttcgcga ccagccagcg aacaatctcg
     1741 taactgaaat tactcgtcac cgtcgttccg gcaatgccag agacttccgg atcgtcgagc
     1801 ggcgaaagat cagcctccgc atcgcgaagc tgtacgacgc gccacgcaaa cggcttgagg
     1861 ctctcttcaa ctttcttaag gaccttcgcg cttggcggat aggcacggag aaatagcaga
     1921 gtttcgtgaa agcggattaa ggattcagcg tcggtcagtc tcgatttcga aagaagcctt
     1981 agtgcgcgct gaaccttcgc atcgccattg ccaaagcgtc gcttcgattc ttccaattca
     2041 gtaagaatgc gtatggaccc tctgcttgcc acgcttttcg caaccctcta ggcttcatca
     2101 caagccagtg cggctcctcc tccaagttga ttgtcgtaat aagatgctca cagaacttat
     2161 catgacattt tctaccgtcg aaggcgtagt cctagtagta caactgcatt acggaagtcg
     2221 ctcagacctt ccgtgcaacc tcactctatc cttgatctcg gacgggcgtc caaaacttcg
     2281 gatcacagtg ctggcagccg accgtagaag gccgcacttt gctcggaaat ttaaagcgcc
     2341 tgtgtgagtc tctgcggcat cggcattgca tgagggctgg ccgaagcccg cgttttctca
     2401 agttaagtta ctcgttttcg atccgaaagg agcagacaat gcaaaaggag attactcgca
     2461 agttcttgtt tgtactgccg ctgatgacgg cgctggtgtt catggccagc acggcggcgc
     2521 tcggccag
//
LOCUS       DASZZE010000048         2274 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_49760, whole genome shotgun sequence.
ACCESSION   DASZZE010000048 DASZZE010000000
VERSION     DASZZE010000048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2274)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2274)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2274
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49760"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            86..1111
                     /locus_tag="VHD88_00860"
     CDS             86..1111
                     /locus_tag="VHD88_00860"
                     /inference="COORDINATES: protein motif:HMM:NF042562.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6687 family protein"
                     /protein_id="HVS20361.1"
                     /translation="MRFEYYHDGLANVPKLSVDGTVANAVHFSHWKGNETPPSVKADT
                     STEIALNLVAAPNREELTRGIDLVTNNHFDTDGVLSVWTFLTSERALEFCDKLIAAAE
                     AGDFSELSTQEGVRASIVIQGSDAPTDVGSPLARQLAGSEVTDEARAYELVLPHVERV
                     LTRTNDYASLWVDPWNRIALALESFAKGRSRVEEDHEAKLSLVTLAPEIFSSVGFKPT
                     RHGAPFTAISHNARGEVFLIATPLDGGWAYRIDYPYYSWAETVVRPNIKRRDFSSLTD
                     RLNEMEKSTAGSWRVDSSELASAAKFSDQNGKLAASSLSLDEVASQLRDLLLQSRTPV
                     AQSVSGR"
     gene            1297..2193
                     /locus_tag="VHD88_00865"
     CDS             1297..2193
                     /locus_tag="VHD88_00865"
                     /inference="COORDINATES: protein motif:HMM:NF014017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HVS20362.1"
                     /translation="MRALRDIHIGPAGWSYADWRGRVYPENAGAKVDTLARVAKYFDT
                     AEINSSFYRPPSPATARSWLQRIAHNPSFTFTAKLYKVFTHERGKATAYDEKAFRAGL
                     DPLFEAGKLGAVLMQFPWSFKNDREERTYLTQLAERFKSYPLVVELRHESWNSPRLLQ
                     TLEDLGVGLCNIDQPLFANSIKPSAEVTSPIGYVRLHGRNYQNWFREETDVVERYDYL
                     YSRDELEPWVERIKEIAQKARQTYVITNNHARGQSLVNAFEVMALLEEQRMPGPAKLI
                     ESYPRLSESVEPDDESAQGELF"
BASE COUNT          531 a          577 c          656 g          510 t
ORIGIN      
        1 gggatgatag aattcgaatt cgttcgaata atctctgctg ttcattgaat cgatggttct
       61 gaaaaaccac ttggactaag taatcatgag atttgagtac taccacgacg gacttgctaa
      121 cgtgccgaag ctttcggtgg atggcacagt cgcgaacgcc gtgcactttt cgcactggaa
      181 gggaaacgaa acaccgccgt cggtgaaggc cgatacgtcg actgagatag cgttgaatct
      241 ggttgccgcg ccgaaccgcg aagagttaac gcgcgggatc gatctcgtca cgaataatca
      301 tttcgatacc gatggcgtgc tctctgtgtg gaccttcctg acgagcgagc gcgcgctgga
      361 attctgtgac aagttgattg cggcagcgga agctggagac ttctccgagc tgagcaccca
      421 ggaaggtgtg cgcgcgagca ttgtgattca aggatcggac gcacctactg atgtcggctc
      481 gcctctggcg cgacaactcg cgggctcaga agtgactgac gaggcccgag catatgaact
      541 ggttttgccg catgtcgaac gagttctgac gcgcacgaat gattacgcat cgctgtgggt
      601 tgacccgtgg aaccggatcg cgttggcgtt ggagagcttt gccaaaggca gatcgcgagt
      661 tgaagaagac cacgaagcga aactttcatt ggtgacactc gcgccggaga ttttcagttc
      721 cgtgggtttc aagccgacac gtcatggggc gccgttcacg gccatctcgc ataacgcgcg
      781 cggcgaagtc ttcttaatcg cgacgccact cgatggcggc tgggcctatc gcatcgacta
      841 tccctactac tcatgggccg aaacagttgt ccgacccaat attaagcggc gcgatttcag
      901 ttcgctcacg gatcggctta acgagatgga aaagagcaca gccggcagtt ggcgtgtgga
      961 ttcttccgaa ctagcttcgg cggcaaagtt ttcggatcag aatgggaagc ttgcggcttc
     1021 cagtctttct ctcgacgagg ttgcgtctca gcttcgcgac cttctactcc aatcgagaac
     1081 tcctgtagcg caatctgtgt cgggtcgttg agccttttga tgtgtgcttt tcttcgcgcc
     1141 tttagagctt tgcgcctttg cgtgaaccaa agccccgcgt aaagaatttc acgcaaaggc
     1201 gctaagaaaa tcgaaagacg caaaggcaga tgaagattgc tatctactcg tcacaatgtt
     1261 cgacaaatct aatacttgtc ggacaaaatc cctagcgtgc gcgcactccg agacattcac
     1321 ataggacctg ccggctggtc atacgccgac tggcgcgggc gtgtttatcc ggaaaacgcg
     1381 ggcgcgaaag ttgacacgct ggcgcgggta gcgaagtatt tcgataccgc tgaaatcaac
     1441 agcagttttt atcgtccgcc gtcacccgca acggccaggt cgtggctgca acgcatcgcg
     1501 cacaatccga gcttcacttt cactgccaag ctctacaagg ttttcacgca tgagcgcggc
     1561 aaagcaacgg cttatgatga aaaagcgttt cgcgcggggc tggatccgct cttcgaagca
     1621 ggcaaactcg gcgcagtgtt gatgcagttt ccgtggtcgt tcaagaatga tcgcgaggag
     1681 cgcacttacc tgactcaact tgccgagcgc ttcaaaagtt atccgctggt cgtcgagctg
     1741 cgccatgaat cgtggaatag ccccaggctc ctacagacgc tcgaagatct cggcgtgggt
     1801 ttgtgcaaca ttgaccagcc gctcttcgcc aactcgatca agccttcggc agaggtgact
     1861 tcgccgattg gttatgtgcg tctgcacgga cgcaattatc aaaactggtt tcgcgaagaa
     1921 acggacgtgg tggaacgtta cgactatctt tattcgcgcg atgagttaga gccgtgggtc
     1981 gaacggatca aggaaatcgc gcagaaggcg agacagacct acgtgattac gaacaatcat
     2041 gcgcgcgggc aaagcctggt gaacgctttt gaagtgatgg cgttgctgga agaacagcgt
     2101 atgcccggac cggcgaagtt aatcgagagc tatccgcgtc tgagcgagtc agttgaaccg
     2161 gatgacgaat cagcgcaggg agagttgttt taggatttgg agacatgtat gttgaatgtc
     2221 aggtcgtttg agtaaactgg ctcggagcaa acctgagcca ggaggaacga cgat
//
LOCUS       DASZZE010000049         5164 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_295046, whole genome shotgun sequence.
ACCESSION   DASZZE010000049 DASZZE010000000
VERSION     DASZZE010000049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5164)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5164)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5164
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295046"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..359)
                     /gene="ribH"
                     /locus_tag="VHD88_00870"
     CDS             complement(<1..359)
                     /gene="ribH"
                     /locus_tag="VHD88_00870"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: protein motif:HMM:TIGR00114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009349 - riboflavin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HVS20363.1"
                     /translation="MQPVTHQGTLNAKAFRFAIVASRWNDSLVSRLIAGAMDALEELS
                     ADENAVEIFRVPGSFEIPLCALKAAESRKFDAVICLGVIIRGQTPHFEYIASEVARGI
                     GEASLKTGVPLLFGVITA"
     gene            669..1580
                     /locus_tag="VHD88_00875"
     CDS             669..1580
                     /locus_tag="VHD88_00875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20364.1"
                     /translation="MKNERRLIANNWRRLLLALLLVSSVLIVSAPREGKSAATTTAQP
                     KKGVVVFAVSAESGEGSMDAVVIVDGKLLRAPYTDEQKDRQKKFADEYFAAGRTYRLI
                     FGGGGAGSVTVKKWSEGCNNVHAEITPATSVRLGGKVMALATNSETLGKRASARRAPT
                     DAERAQVMALMKSIYSQNRTLASLIPSIKATNLTATDLDGDGKYEMIGSFTLAAKNEF
                     ERDLFLIAHQQGASMRADFVKFQAYKPPPEGFLSSIDFIDQLDLDGDGVGEVFATQGG
                     FDGYALLIFKKVGGRWRQVYDTIGDAC"
     gene            complement(1704..4418)
                     /locus_tag="VHD88_00880"
     CDS             complement(1704..4418)
                     /locus_tag="VHD88_00880"
                     /inference="COORDINATES: protein motif:HMM:NF019334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HVS20365.1"
                     /translation="MNASRQQFKELFHAAVELTPHDREAFLIANCASDDELRREVSAL
                     LTAHESAGDFIQQPALVDVGLVANDGQANSNAAVSGQQIGSYQILRELGRGGMGAVYL
                     AARVDHSFDKQVALKLIKRGMDSDAIIKRFVMERQILANLDHPNIARLIDGGTTEDGL
                     PYFVLEYIGGTTITRYCDQHKLNTMERLKLFRQVCAAVQFAHQNLIVHRDLKPSNIIV
                     TEDGTPKLLDFGIAKLLNADWSASVEATATIGRVLTPEYASPEQLRGLPITTSSDVYS
                     LGVVLYEVLSGHRPFYFESRLPEDVARLITSSEPMKPSIAIARIETARHTDDAEQISR
                     TPEAISSTRDGNIEKLRRRLAGDLDNILLKALRREPGRRYASVQEFSEDLRRHLEGLP
                     VLARPDTLSYRTGKFITRHKAGVAAAVIVVLTLLSATVITSWQARVARQERAKAERRF
                     KDVRNLTNSFLFDFHDAIADLSGATKAREMVVKKAQEYLDSLAQEAGEDRELLWELST
                     AYLKLGDVQGRPGFSRTGDTGAALQSYEKSLTTRRRLAGLEPNNAEYQLGLAETLSRF
                     GPLFQVLGKPNAAVEKMREAMEITDRLLPQSQDWPTLLTATRSVNFLGDALAETGNYN
                     EALAMYQKGLSNVEQKRGVLPDKEIRDRLGVSRERLGIIFGIKGEWQKSLDNHLEFLA
                     ITEELSSREPTSLDYARGKATAFDSVGDAYRGLKNYPKALENGKRGLAMYEEFLKGDP
                     QNARAKKDVGDCSHHVAETLLASGDYHDALSLLQKTVSIRRGLVALDETNVEYPDDLA
                     ESLMLTGESLAASGNFTKAIEVFQEARAISEPIVSSHRQRIDYRRGLARLYTDLGAAF
                     VAVKNQNEAELCYRKGLDLWSELRDQHALWAKEIDMPKEVAEKLARVR"
     gene            complement(4518..5114)
                     /locus_tag="VHD88_00885"
     CDS             complement(4518..5114)
                     /locus_tag="VHD88_00885"
                     /inference="COORDINATES: protein motif:HMM:TIGR02999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HVS20366.1"
                     /translation="METSTGELTRLLQDCSDGSREALDKLLPLVYDELRRLAHSYLTH
                     ERPDHTLQTTALVHDAYLKLIDQRSVNWQNRAQFFALSAQAMRRILIDSARRHTSIKR
                     GGGGTKISLDEAATVSGETANESLLALDMALQELAKVDAEQSRIVELRYFGGLTIEET
                     AEVLKTSAATVKREWTMARAWLYQAMTGSRESLAEPNE"
BASE COUNT         1113 a         1438 c         1410 g         1203 t
ORIGIN      
        1 gccgtaatga cgccaaacag caaaggcacg ccggtcttca ggctcgcttc tccgatgccg
       61 cgcgcgactt cactggcgat gtattcaaag tgcggcgtct gaccgcgaat gatcacgcca
      121 agacagatca ccgcatcgaa cttgcgcgac tcagccgctt tcagagcgca aagaggaatc
      181 tcgaacgagc ccggcacgcg aaaaatctcg accgcgttct catcggcaga gagttcttcg
      241 agagcgtcca tcgcgccggc gatcagacgc gaaaccagcg aatcattcca acggctcgcc
      301 acaatcgcaa agcgaaaggc tttggcgttg agtgttcctt gatgcgttac tggttgcaaa
      361 gttagcgatg cgattagaca gtggcagtaa gagcaagtcg agtatagtga cggctgcgca
      421 gggtgacaag gcgacctatg aggtaacttg ttatcggttt ctttgcggct tcagtattcc
      481 cttgcgcctt tgcgtgagct gtaactccgc gacagaagat tttcacgcaa aggcgcgaag
      541 taaatcagaa ggcgcgaaag acaaaccagg acacactctg tgaagcttgc ttgattccgt
      601 caggaaccgc atcgagtgta tgatatccgc cgatcgactt gaccggaccg agaaggagtg
      661 aatcaaaagt gaaaaacgag cgtcgcttga ttgcgaataa ttggagacgc cttctgttag
      721 cgctgctgtt agtttcatct gtcttgattg tgtctgcgcc gcgggaaggg aagtcagccg
      781 ctacgaccac cgcccagccg aaaaagggcg tcgtggtctt tgctgtctca gccgaatcag
      841 gcgaaggcag catggacgcg gtcgtcatcg ttgacgggaa gctcttgcgg gcgccataca
      901 ccgacgaaca gaaagacaga cagaagaaat ttgccgatga atacttcgcg gctggtcgaa
      961 cctatcgctt gattttcggc ggcggcggag ccggcagcgt gacggtgaaa aagtggagcg
     1021 aagggtgcaa caacgtgcat gcggaaataa ctccggcaac ttctgtgcga cttggtggca
     1081 aggtgatggc gctggcaact aactctgaaa cgcttggcaa gcgtgcgagc gcgcggcgtg
     1141 cgcccactga cgccgagcgg gcgcaagtga tggctttgat gaagagcatc tactcgcaaa
     1201 accgcacgct ggcgagtctg attccttcga ttaaggctac gaacctcacg gcaaccgatc
     1261 tcgatggcga tggcaagtac gaaatgattg gcagctttac attggcggct aagaacgagt
     1321 tcgaacgaga tttattcttg attgctcatc aacaaggcgc gtcaatgcgc gccgactttg
     1381 tgaagtttca ggcttacaaa cctccgcccg aaggttttct ttcgagcatc gactttatag
     1441 accaattgga tcttgatggt gacggtgtcg gcgaagtctt cgctacgcag ggcggctttg
     1501 atggctacgc gcttttgatt ttcaagaagg ttggcggccg ctggcggcag gtttacgaca
     1561 ccatcggcga cgcgtgctga gcgattggcc caggaattct tttcgctttc ttgggaagtg
     1621 agaggggcgt cgcgacgatg ttacctggat ggtgttttct tcctctgtgg gttgactcct
     1681 taaaacctat tcttggaacc tggctaacgt acccgagcaa gcttttccgc aacctctttc
     1741 ggcatgtcta tctctttcgc ccataaggca tgttggtccc gtagttcact ccacaaatca
     1801 agtcccttcc gataacaaag ctcagcttcg ttttggtttt tcacagcgac gaaagcggca
     1861 cccaaatccg tgtaaagccg cgccagtccg cgccgatagt caattcgttg ccggtgcgat
     1921 gaaactatcg gttcacttat tgctcgcgct tcttgaaaaa cttcaatcgc tttcgtgaag
     1981 ttaccgcttg ccgccaaact ttcgcccgtc aacatcaaac tttccgccag gtcgtccgga
     2041 tattcgacgt tggtttcatc gagggcgacg agtccgcgcc gaatgctcac cgttttctgc
     2101 aaaagcgaca acgcgtcatg gtaatcaccc gacgccagca gagtttcagc aacgtgatga
     2161 gagcaatcgc cgacgtcttt tttcgcccgc gcgttttgcg ggtcaccctt caggaattct
     2221 tcatacatcg ccaggccgcg tttgccgttt tcgagtgctt tcggataatt tttcagcccg
     2281 cgatacgcat cgccgacact gtcaaacgcc gtcgctttgc ctcgcgcata gtcgagactt
     2341 gtcggttcgc gcgaagacaa ttcttctgta atcgccagga attccagatg attgtcgagc
     2401 gacttttgcc attcaccttt gattccgaaa attattccga gcctttctct gctgacgccc
     2461 agacgatccc tgatctcttt gtcgggtaaa actcctcgct tttgttcgac atttgacaaa
     2521 cctttttgat acatcgccaa agcctcgttg taattgcccg tctcagccaa cgcatcaccg
     2581 agaaaattaa cgcttcgtgt cgccgttaga agagtcggcc agtcctgcga ttgcggtaag
     2641 agtctgtccg tgatttccat tgcctcgcgc attttttcaa ccgctgcgtt aggcttcccc
     2701 agaacttgaa agaggggacc gaagcgtgaa agcgtttcgg caagaccgag ttgatattca
     2761 gcgttattcg gctcaagacc tgctaagcgc cttcgagttg tgagcgactt ttcgtaagac
     2821 tgcaaggccg cgcccgtgtc acccgtgcgc gaaaacccag gccgtccctg cacatcgcca
     2881 agctttagat acgcagtgga gagttcccag agcagttcgc gatcttcgcc tgcttcctgc
     2941 gccaaactgt ccagatactc ttgcgctttt ttgacaacca tttcacgcgc cttggtcgcg
     3001 ccgctcagat cggcgattgc gtcgtgaaaa tcgaacagaa acgaatttgt cagattccgc
     3061 acgtctttga atcttcgttc tgccttggcg cgttcctgtc gcgccacgcg cgcttgccag
     3121 ctcgtgatga ccgtggccga cagcaacgta agcacgacaa taacggccgc cgccacgcct
     3181 gccttatgtc gcgtgatgaa tttgcccgtg cggtaggaca gagtgtcagg ccgggcgagt
     3241 accggcaggc cctcgagatg gcggcgaagg tcctctgaga attcctgcac cgaggcgtag
     3301 cgccgcccag gttctctccg cagagccttc agcaggatgt tatccaaatc gcccgctagc
     3361 cggcggcgca gtttctcgat gttgccatcg cgcgtgctgc tgattgcctc gggcgtgcgc
     3421 gagatctgtt cggcatcgtc ggtgtgacgt gcggtttcga tacgggcgat ggcgatgctg
     3481 ggtttcattg gctctgacga cgtaatcagc cgcgcaacat cttccggcaa gcgactctca
     3541 aaatagaacg gacgatggcc gctcaatact tcgtacaaca caactccaag cgaatagacg
     3601 tcactactcg tggtgatagg caaaccacgc aattgctcag ggctcgcgta ttcgggtgtg
     3661 agcacgcggc cgatcgtcgc ggttgcctca acggaagcag accaatccgc gttgagcaat
     3721 ttggcgatgc caaagtccag cagcttgggt gttccgtctt ccgtgacgat gatattgctc
     3781 ggcttgaggt cacgatgcac gatcaagttc tgatgcgcga actgcacggc cgcgcagacc
     3841 tgacgaaaga gtttcagccg ttccatcgta ttgagtttgt gttggtcaca atagcgagtg
     3901 atggtcgtgc ccccgatata ctccaacacg aaatacggca aaccgtcttc cgtggtccca
     3961 ccatcaatca gccgggcgat gttcgggtga tccagattgg cgaggatttg ccgctccatc
     4021 acaaagcgct tgatgatggc gtcggaatcc atgccgcgct tgatgagttt gagggcgact
     4081 tgcttgtcga aagaatgatc gacacgagct gccaggtaaa ccgcgcccat gcccccacgc
     4141 cctaactcgc gcaggatttg atagctgcca atctgctgtc cgctgaccgc tgcattactg
     4201 ttcgcttgtc catcgttggc aaccaaacca acatcgacga gcgcgggctg ttgaatgaag
     4261 tcgccggcgg attcgtgtgc tgtcaacagc gcggagactt cgcggcgaag ctcatcatca
     4321 cttgcgcagt ttgctattag aaaagcttcg cggtcatgcg gcgtgagttc aaccgcggcg
     4381 tggaaaagct ctttgaattg ttgccggctt gcgttcatat cggtaggggc ggacctatgt
     4441 gtccatccac cagttcgcgg tttacaccca agctgggcgc acacacaggt gcgcccctac
     4501 ttaaaacgcg cgaagactca ttcgttcggc tcagcgagag attcgcgcga gccggtcatc
     4561 gcctgataaa gccacgcccg cgccatcgtc cattcgcgct tgaccgtcgc ggccgaggtt
     4621 ttcaagacct ccgccgtctc ttcaatcgtc aaaccgccga agtatcgcaa ctcgacgatt
     4681 ctactctgct cggcgtcaac ctttgccaat tcctgcaaag ccatatcaag cgccagcagt
     4741 gattcgttcg ccgtttcacc ggagacagtt gcagcttcat cgagtgagat ttttgttccg
     4801 ccacccccac gtttgatcga agtgtgccgc cgcgcgctgt cgatgaggat gcggcgcatg
     4861 gcctgggctg agagggcgaa gaactgggcg cggttctgcc aattgaccga gcgttggtct
     4921 attagtttca gataggcatc atggaccagc gccgtggtct gcaacgtgtg atcagggcgc
     4981 tcgtgggtga gatagctgtg cgcaagacgg cgtagctcgt cataaacaag cggcagcagc
     5041 ttatccaaag cttcgcggct gccatcgcta cagtcctgaa ggaggcgcgt aagttcacct
     5101 gtcgaagtct ccatatttcc gcccgaaaac cgcttttcct aagacggctt gagccaattc
     5161 ttac
//
LOCUS       DASZZE010000050         1810 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_49847, whole genome shotgun sequence.
ACCESSION   DASZZE010000050 DASZZE010000000
VERSION     DASZZE010000050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1810)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1810)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1810
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49847"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(131..865)
                     /locus_tag="VHD88_00890"
     CDS             complement(131..865)
                     /locus_tag="VHD88_00890"
                     /inference="COORDINATES: protein motif:HMM:NF015945.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspA/IM30 family protein"
                     /protein_id="HVS20367.1"
                     /translation="MGLWTRVKRSMRALFGGIVEKTEDPELILQQTIRDMRDRIPDLN
                     NSVAQVMATEKLLAKNKERLEVQVVDLDSKIKASIKMSRDDIAAAYIGQLQQAQVDLQ
                     KTGHQLEHASLASKQALKARDNYVLQMQKRSAEAMQLINQSKQAKLQEQLAQTMASFQ
                     IGDDASTFEDMRDKIDRRAAAAEARMQLGTASVDTQMQEIEREAMDMQLQDKLLSYKR
                     EMGLLPAGTSESSPQALPAQGETSNQ"
     gene            complement(1094..>1810)
                     /locus_tag="VHD88_00895"
     CDS             complement(1094..>1810)
                     /locus_tag="VHD88_00895"
                     /inference="COORDINATES: protein motif:HMM:NF013254.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009113 - purine nucleobase biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide synthetase C
                     domain-containing protein"
                     /protein_id="HVS20368.1"
                     /translation="EASLLLFSDGKDFRLMPAARDHKRVGENDTGPNTGGMGSITDAS
                     VLDDATLDRVVREIVKPTLQGARDEGFPFRGVLFIGLMLTSDGPRVLEYNVRFGDPET
                     QAILVRLQSDLVEVFQAIAEQRLGAVDAKWSNDSSACVVLAARGYPGKPETGARIEGL
                     DRVEQRQNATVFHAATTRGANGEWLTAGGRVLGVTATGTTLDGALSRSYQAVGDIRWD
                     GMHYRRDIGKDTEPRAIARG"
BASE COUNT          368 a          532 c          501 g          409 t
ORIGIN      
        1 ctttgaatgc ctccttcacg taccgaaaat cgatcttggg caattccatg aactgtacga
       61 agggtgcttc ctaagggttc gtaatgccga aatcctgcgc gtgaccgctc gcgtgcgcgt
      121 gacccaaccg ctactggttg ctggtttcgc cttgcgcggg cagcgcctgc ggcgaagact
      181 cgctcgtgcc ggcgggcaac aaccccatct cacgcttgta cgaaagcagc ttgtcttgca
      241 actgcatgtc catcgcctcg cgctcgatct cctgcatctg cgtatcaacc gaggcagtgc
      301 caagttgcat tctcgcttca gcagcagccg cgcggcgatc gatcttgtcg cgcatatctt
      361 caaacgttga agcatcgtcg ccaatctgga acgacgccat cgtttgtgca agttgctcct
      421 gcaacttcgc ttgcttcgac tggttgataa gctgcatcgc ctcagcggag cgcttctgca
      481 tctgcaacac gtaattgtcg cgggccttca gcgcctgctt ggacgccaaa cttgcatgct
      541 caagttggtg cccggttttt tgcagatcaa cctgcgcctg ttgaagctgg ccgatatacg
      601 cggcggcaat gtcgtcacgg ctcatcttga tcgacgcttt gatcttcgaa tcaagatcga
      661 cgacctgaac ctcgagccgc tccttgttct tagccagaag tttttccgtg gccatcacct
      721 gcgcaaccga gttgttgagg tccggaatgc gatcgcgcat gtcgcggatg gtttgctgga
      781 gtatcagctc cgggtcctca gtcttttcga cgattccgcc aaaaagcgcg cgcatcgaac
      841 gctttactct agtccatagt cccatttgtc actcatcctc cagcaaattc agattcgaag
      901 atcaaaggca gaactcaaag cggtcgtcaa acgcgggcgc accttcggtt agtacgaaac
      961 agcggcgcgc acggttgcat ttccaaccga ttttgacggg agtatagcaa agaacagtgg
     1021 gcgtgggcag tgagcggaag gcaggaggaa gccaaagggc tggagggcgt catcgatgcg
     1081 acgaaacgct ctgttacccg cgagctatcg cgcgaggttc tgtatctttg ccgatgtcgc
     1141 ggcggtagtg catgccgtcc cagcgaatgt cgccaacggc ttgataagaa cgagacaaag
     1201 cgccgtctaa tgttgttccg gtcgccgtta cgccgaggac acggccgccc gcggttagcc
     1261 attcaccatt cgctccgcgg gtcgtggcgg cgtggaatac ggtagcgttt tggcgctgtt
     1321 ctactctgtc aagaccttca atacgcgcgc cggtttccgg ctttcccgga taaccgcgcg
     1381 cggcaagcac aacgcacgcg gaagaatcgt tggaccactt cgcatcgact gcgcccagtc
     1441 gctgttcggc gatcgcctga aagacttcga ccaggtcgct ctgcaaccgc acgagaatgg
     1501 cctgcgtttc gggatctcca aaacgcacgt tgtactccag cacgcgtggg ccgtcgcttg
     1561 tcagcatcaa tccgatgaat aagacgccgc gaaatggaaa gccttcgtcg cgcgcgcctt
     1621 gcagggttgg cttgacgatt tcgcgaacga cgcgatcgag agttgcatca tcgagcacgc
     1681 tagcatcagt tattgagccc atgccgccgg tatttggccc agtatcgttt tcgccaacgc
     1741 gtttgtggtc gcgcgccgca ggcatcaagc gaaaatcttt gccatcggaa aacaaaagca
     1801 gcgatgcttc
//
LOCUS       DASZZE010000051         2363 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_132238, whole genome shotgun sequence.
ACCESSION   DASZZE010000051 DASZZE010000000
VERSION     DASZZE010000051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2363)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2363)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2363
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_132238"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..501
                     /locus_tag="VHD88_00900"
     CDS             <1..501
                     /locus_tag="VHD88_00900"
                     /inference="COORDINATES: protein motif:HMM:NF044806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20369.1"
                     /translation="FLGNYGMMLRALAYTLTHGYDGLREATEAAVLNARYIAHGLLAD
                     YEKPFDAAPMHEVVFTDKRQARKGVHTLDIAKRLIDYGFHPMTIYFPLIVSGAMLIEP
                     TESVGRQELDQFLDAMRAIAREAIEDPELVMNAPHTTRIGRLDEAAAARKPVLRWKPK
                     QTATAS"
     gene            542..868
                     /locus_tag="VHD88_00905"
     CDS             542..868
                     /locus_tag="VHD88_00905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20370.1"
                     /translation="MSAQQNWTGLQIETGFFPLSFFLYLCTPTIIIDGVACQRPWGTH
                     YFQLGPGTHSVTIFFHYIWMQQCGANSINVTIHEGYVSRIKYEMPPWMFAKGSMRELP
                     PYVPQK"
     gene            903..1313
                     /locus_tag="VHD88_00910"
     CDS             903..1313
                     /locus_tag="VHD88_00910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20371.1"
                     /translation="MLKQFRSARGTKRVMAALFVGALAAGYIFAEGVKRKVRFVRGTS
                     STTITGAVIRGDRDRYYVGAKKGQTMSVKITSLEKNAVFQIYFHGEEESLPGAGDGDD
                     ATKWSGELPIDNEYVIVVGGTRGNATYTLTISIN"
     gene            complement(1321..1764)
                     /locus_tag="VHD88_00915"
     CDS             complement(1321..1764)
                     /locus_tag="VHD88_00915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S) ferredoxin domain-containing protein"
                     /protein_id="HVS20372.1"
                     /translation="MAEPKFIADPDELRALAPVTAAPIRHHVFVCAGKSCSANDSAEV
                     RAAFERELTARGLLMGQAKKGKNPRGSIVLTDCASVGFCAIGAAVLVYPDGVWYAQVR
                     AVDVPEIIEEHLLNDRVVKRLALLKVPAEGSAEPTSAGENSDWEV"
     gene            1946..>2363
                     /locus_tag="VHD88_00920"
     CDS             1946..>2363
                     /locus_tag="VHD88_00920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20373.1"
                     /translation="MADQNSNGLVIHVSSLNDRSTEVVMSDVIRIGASEECDVKIRLP
                     LTAAPVNGPVIELARQNGVYRIANVDATLEVRLNGRPIKPNRGIYDGDEIWIGPSGPS
                     IHFFPIEASAALVPGRRDAHVAPFIEQAAMEASATAR"
BASE COUNT          523 a          696 c          673 g          471 t
ORIGIN      
        1 tttctaggaa actacggcat gatgctgcgc gcattggctt acacactcac gcacggctac
       61 gacggtttgc gtgaagcaac tgaagccgca gtgctgaacg cgcgctacat cgcgcatggt
      121 ttgctggcag attatgagaa gcctttcgac gcagcgccga tgcacgaagt cgttttcacg
      181 gacaaacgtc aggcgcgcaa gggcgtccac acgctggaca tcgccaaacg cttgatcgat
      241 tacggctttc atccgatgac gatctatttt cctttgatcg tttcgggggc gatgctgatc
      301 gagccgaccg aatccgtcgg acgacaggaa ctggatcagt ttctcgatgc gatgcgcgcg
      361 atcgcgcgcg aagctatcga agatcctgaa ctggttatga acgcgccgca caccacgcgc
      421 atcggccgcc ttgacgaagc cgccgccgcg cgcaaacctg tgctgcgctg gaagccgaag
      481 cagactgcga ccgcgtcgta aggacgcacc cgaaccttgg caggtacaag gagaacaacc
      541 gatgtccgca caacaaaact ggaccggcct gcagatagaa acgggcttct ttcccctttc
      601 attttttctc tatctctgca cgccgaccat catcatcgac ggcgtcgcgt gtcaaagacc
      661 gtggggcact cactactttc agctggggcc gggcacgcac agcgtcacaa tctttttcca
      721 ctacatttgg atgcagcagt gcggcgccaa ctcgatcaat gtgacgatcc atgaaggcta
      781 cgtcagcagg atcaagtatg agatgccgcc gtggatgttt gcgaagggtt cgatgagaga
      841 actgccgcct tacgtaccgc aaaagtaaac gcgacggccg gtcagacaaa aggagagggc
      901 taatgcttaa gcaattcaga tccgcgcgcg gaaccaaacg ggtgatggct gcgctctttg
      961 tcggcgccct ggcggccggc tacattttcg ccgaaggcgt gaaaaggaaa gtgcgctttg
     1021 tccgcggcac ttcttcgacc acgatcaccg gcgcagttat acgcggcgac cgcgaccgct
     1081 actacgttgg cgcgaagaaa ggccagacga tgtcggtaaa gatcacctcg cttgagaaga
     1141 acgcggtctt tcagatttat ttccatggcg aagaggagtc tttgccgggc gccggcgatg
     1201 gcgacgatgc cacgaagtgg tcgggcgagc taccgatcga caacgagtac gtaatcgtgg
     1261 ttggcggcac ccgcgggaac gcaacctaca cgctgactat ttcgatcaat tgatcgcgaa
     1321 ctaaacttcc caatcgctat tctctcccgc gctggttggt tcggctgacc cttccgccgg
     1381 gactttcaat agtgctaatc gcttaacgac gcgatcgttc aagaggtgtt cttcgataat
     1441 ctcaggcaca tcgacagcac gcacctgcgc ataccagacg ccgtcgggat agacgagcac
     1501 ggccgccccg atggcgcaga aacctaccga agcgcaatcg gtcagcacga tgcttcccct
     1561 ggggttcttg cccttcttcg cctggcccat cagcagcccc cgggcggtca attcacgctc
     1621 gaatgctgct ctgacttcgg cactgtcgtt tgctgaacag gacttgcccg cgcaaacaaa
     1681 cacgtgatgc cggatgggcg ccgcggtaac cggcgcgagg gcgcggagct cgtccgggtc
     1741 ggcaatgaac ttcggttcag ccacaatagt cttatgctag cacgaagacg cgtcgctgat
     1801 taacgaagta gtctttgctg gcaaacggat tcattgtaag attgcttgcg aatgggcgac
     1861 cgcttttccg accgcatcaa gctccgtggc ggtcttcgat gcgggcgcct gatttgatat
     1921 ttgggacacc taaacgcatc aaaagatggc tgaccagaat tcaaacggcc tggtaattca
     1981 cgtctcgtcg ctcaacgatc gctcgaccga agtagtcatg agtgacgtca ttcggatcgg
     2041 cgccagcgaa gagtgcgacg taaagattcg gctgccgctg actgccgcac ccgtcaacgg
     2101 cccggtgatc gaactcgcgc gccagaacgg cgtttaccga atcgccaatg tcgatgcgac
     2161 gctggaagtt agactcaatg gccgccccat caaaccgaac cggggaatct acgacggaga
     2221 tgaaatctgg atcgggccct ccggaccgtc gatacatttc tttcccattg aggccagcgc
     2281 cgcgctcgta cccgggcgcc gcgatgcgca cgtggcgccg ttcatcgaac aggccgcaat
     2341 ggaagcttcg gcgacggcgc gcc
//
LOCUS       DASZZE010000052         3347 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_83350, whole genome shotgun sequence.
ACCESSION   DASZZE010000052 DASZZE010000000
VERSION     DASZZE010000052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3347)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3347)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3347
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83350"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..426
                     /locus_tag="VHD88_00925"
     CDS             <1..426
                     /locus_tag="VHD88_00925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20374.1"
                     /translation="ADQVVWASGLRTWQRLVQRGVWVNGCAESLGEDEPTRIETVAGG
                     DLKWLKLTHSNGFVESEMESLATYRLVPKTEELDLRDKRYFFWASGSSFEHALSRNPW
                     LTQMTHFCGPGNTRRALERNGVTPFVFLDHAQWLKEMSQ"
     gene            402..1379
                     /gene="hemB"
                     /locus_tag="VHD88_00930"
     CDS             402..1379
                     /gene="hemB"
                     /locus_tag="VHD88_00930"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: protein motif:HMM:NF012702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004655 - porphobilinogen synthase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HVS20375.1"
                     /translation="MAQGDVAMKRLMRLRSSYHLRDLCAETEFTRAQLIQPLFVVEGL
                     AREEPIPGLRGNVRHGVTSLLRQIESDLADGVTQFLLFPVPREKKENSFAHQFTAEAI
                     AEIRRQFGDSLCLWIDTCLCSYTTHGHCAVLDGPRIDHKATLDELANSAVAFAEAGAN
                     GISPSDMMDGRVAHIRAALDERGFDLIPVMSYSTKFASNFYGPFRNAADSAPQFGDRK
                     HYQLDVRNRSGAIAASVRCAEEGADLLMVKPGMTSLDLIAPIREQTGLQVGAYQVSGE
                     YAGLSLLAEQGLVNFEQALLETWHVFKRAGARFIITYGARDARRLGIGA"
     gene            1398..2723
                     /locus_tag="VHD88_00935"
     CDS             1398..2723
                     /locus_tag="VHD88_00935"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: protein motif:HMM:NF000818.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HVS20376.1"
                     /translation="MVSQQLGLAGAGLSSKCFERALRVSPGGVHSPVRAFKGVGGSPV
                     FFRNAKGATMTSVDGREYIDFCQSFGPLMLGHRDAEVSEAVEEAVRTAWTFGACEPYS
                     LELAEWITSRLSWVEMLRFVSSGTEAVMSALRVGRAATNRQRVLKFEGCYHGHVDSLL
                     VKAGSGLAGVSASSSAGVSAAVAAETLVAPLDDEEAVRAIFEEHGADIAAVILEPQPA
                     NYGLLIQRREFIAETVKLAHDNGSLVIFDEVISGFRVALGGMVEVLGLRPDLVCYGKV
                     FGGGFPVGCYGGRRDLMELVAPSGPVYQAGTLSANPIGMRAGLATLQKIERVNAYAQL
                     EEKTARFCDDLDQDLQRRGLPFQVTRAASIFWLHVRADSVIRRLEQIPADHAAKFARI
                     FHGALARGVYLPPSGFEVCFMSLAHSDELLEQAREAILAAVEETETRGS"
     gene            2725..>3347
                     /locus_tag="VHD88_00940"
     CDS             2725..>3347
                     /locus_tag="VHD88_00940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20377.1"
                     /translation="MRERKHDRIVILLVGLWVLFTVTLAGWWLVFGLRQLDRLKQFNL
                     EGAADFRQHYQMLIWEGGVLIVSLVGGGIALFYYAHREQKRHAQVEEFFAAFTHDAKT
                     ALASLCLQAESLREDSAADASNPLLDRLLSDTVRLQLQLENSLFLVNLPTGKLFVEPV
                     MLGDLVEALRHHWPDLTITQRGDGVVLADVRALESVLANLVQNAMTHG"
BASE COUNT          664 a          857 c         1060 g          766 t
ORIGIN      
        1 gcagatcaag tagtatgggc cagcggcctg cgcacgtggc aacgtcttgt ccagcgcggc
       61 gtgtgggtaa acggttgcgc agagagtctg ggtgaagatg aaccgacgcg catcgaaacg
      121 gtcgccggcg gtgatttgaa atggttgaag ctcacgcatt cgaacggatt cgttgagagc
      181 gaaatggaat cgttggcgac ttatcgattg gtcccgaaaa ccgaagaact cgatcttcgt
      241 gataagcggt acttcttttg ggccagcggt tcgagcttcg aacacgcgct ttcgcgtaat
      301 ccctggctga cacagatgac gcacttctgc gggccgggca atacacggcg tgcgctggaa
      361 agaaatggag tgacgccttt cgtgttcttg gatcacgctc aatggctcaa ggagatgtcg
      421 caatgaagcg tttgatgcgc ctacgcagtt cgtaccacct gcgcgatttg tgcgccgaaa
      481 cagaattcac ccgcgcgcag ttgattcaac ctctgttcgt ggttgaaggg ctggcgcgcg
      541 aagaaccaat ccccgggctg cgcggcaacg ttcgtcacgg cgtcacgtct ttgctgcgac
      601 aaatcgaaag cgacctcgca gatggcgtaa ctcagttttt gcttttccct gtgccgagag
      661 agaaaaagga aaatagtttt gcgcaccagt tcaccgcgga agccatcgcc gagattcgtc
      721 gccaatttgg cgacagttta tgtttgtgga ttgatacgtg tctttgctcg tacacgactc
      781 acggacattg cgcggtgctg gacggcccgc gcatcgatca caaagcgacg ctggacgagt
      841 tggcaaactc ggccgtggct ttcgccgaag ccggcgcgaa cggaatcagt ccgagcgata
      901 tgatggatgg ccgtgtcgcg cacattcgcg ctgctttgga tgagcgaggt ttcgatctaa
      961 ttccggtgat gagttacagc acaaagttcg cgagcaattt ctacggcccg tttcgcaacg
     1021 cggctgattc cgcgccacag tttggcgatc gaaagcatta ccagctcgac gtgcgcaatc
     1081 gcagcggcgc gattgcggcc agtgttcgct gcgctgaaga aggcgcggat ttgctgatgg
     1141 tcaaacccgg catgacttcg ctcgatctga tcgcgccgat tcgtgagcaa accggattgc
     1201 aagtcggagc gtatcaggtg agcggcgagt atgccgggct ctcgctgttg gccgaacaag
     1261 gcctcgtcaa tttcgagcag gcgctgctgg aaacgtggca cgtgttcaag cgcgccggtg
     1321 cgcggttcat aatcacctac ggcgctcgcg acgcgcgacg gttgggaatt ggggcttaga
     1381 acataaacga aatcgatatg gtttcccaac aactcggttt agctggtgct ggtctttcgt
     1441 cgaaatgctt cgagcgcgcc cttcgcgtat cgcccggcgg cgttcacagt cccgtgcgcg
     1501 cgttcaaagg cgtcggcggt agcccggttt tctttcgcaa cgcgaagggc gcgacgatga
     1561 cgtcggttga tggacgcgag tacatcgatt tctgtcagag cttcggcccg ctgatgctcg
     1621 gtcatcgcga cgcggaagtt agcgaagccg tcgaagaagc agtgcgaact gcatggactt
     1681 tcggcgcgtg cgaaccttac tcgcttgaac tggcggaatg gatcacgtcg cgactctcgt
     1741 gggttgaaat gctgcgcttt gtttcttccg gcaccgaagc cgtgatgagt gcactgcgtg
     1801 tggggcgggc cgcgaccaac aggcagaggg ttctcaagtt tgaaggttgt tatcacggtc
     1861 acgtcgattc tctactagtc aaagccggga gcggacttgc gggcgtgtcg gccagttcga
     1921 gcgcaggcgt gtctgcggcc gtggctgcgg agactctggt ggcgccgctt gacgatgaag
     1981 aagccgtgcg cgctatcttt gaagagcacg gcgccgacat cgccgcggtg attctggaac
     2041 cacagccggc gaactacggg ttgttgattc agcggcgcga gttcatcgct gaaacagtga
     2101 agctcgcgca cgacaacggc agcctggtga tctttgacga agtgatttcg ggatttcgcg
     2161 tggcgctcgg cggcatggtc gaggtacttg gtcttcgtcc cgatttggtt tgctacggca
     2221 aagtcttcgg tggtggcttt cccgtgggtt gctatggtgg tcgtcgcgat ttaatggagt
     2281 tggtcgcgcc gtcagggccc gtctatcaag cgggaacctt gagcgcgaat ccgatcggca
     2341 tgcgcgccgg tttggcaacg ctgcaaaaga tcgaacgcgt caatgcgtac gcgcaactgg
     2401 aagaaaagac ggcgaggttc tgcgatgatc ttgatcagga tttacaacga cgtggtttgc
     2461 catttcaagt gacgagagcg gcttcgatct tctggctgca cgtgagagcg gatagcgtca
     2521 tccgaagatt ggagcaaatt ccggctgatc acgcagcgaa gtttgcgcga atctttcatg
     2581 gcgcactggc gcggggagtc tatctgccgc ccagcggttt tgaagtttgc ttcatgtcgc
     2641 tggcgcactc ggatgaattg ctcgagcaag cgcgcgaagc gattctggca gcggttgagg
     2701 agactgagac aagaggttcc tgagttgaga gaacgaaagc acgatcggat tgtcattctg
     2761 ctggtgggac tgtgggtgct tttcacggta acgctggcgg gttggtggct cgtgtttggt
     2821 ttgcggcaac tcgatcgact gaaacagttc aacctcgaag gcgccgctga cttccgacag
     2881 cattatcaaa tgttgatctg ggaaggcggt gttttgatcg tgtcgctggt cggcggcggc
     2941 atcgcgcttt tttactacgc gcaccgcgaa caaaagcgac acgcgcaggt cgaagaattc
     3001 ttcgcggcct ttacgcatga cgcgaaaacg gcgctcgcca gtttgtgttt gcaagccgag
     3061 agcttgcgcg aagattccgc ggctgacgcg tcgaatcctt tgctggatcg tttgcttagc
     3121 gacaccgtgc gtttgcaatt gcaattggag aactcgctct tcttagtcaa tcttcccacc
     3181 ggaaaacttt ttgtcgagcc ggtaatgctc ggcgatctcg ttgaggcctt gcggcatcat
     3241 tggccagacc tgacgatcac tcagcgtgga gacggtgtcg tgctcgctga tgtgcgcgcg
     3301 ctggagagcg tgttggcgaa tctggttcag aatgcgatga ctcacgg
//
LOCUS       DASZZE010000053         2138 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_246046, whole genome shotgun sequence.
ACCESSION   DASZZE010000053 DASZZE010000000
VERSION     DASZZE010000053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2138)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2138)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2138
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_246046"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..193)
                     /locus_tag="VHD88_00945"
     CDS             complement(<1..193)
                     /locus_tag="VHD88_00945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20378.1"
                     /translation="MPRKRITAVDLRARVPAIARALALFLLIAGAVFVGVSYYKMRHN
                     TPFRLKSEAPALSKEIRGIV"
     gene            complement(318..2030)
                     /gene="recJ"
                     /locus_tag="VHD88_00950"
     CDS             complement(318..2030)
                     /gene="recJ"
                     /locus_tag="VHD88_00950"
                     /inference="COORDINATES: protein motif:HMM:TIGR00644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008297 - single-stranded DNA
                     exodeoxyribonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HVS20379.1"
                     /translation="MSVKRWVVREHDKGRAEALASALGVSPIVAGLLMARGHQDVSSA
                     QAFLNPSLDQLHDPSLMLGMSDAVARVLRAIDGHEPVLIYGDYDVDGTTGTAVLLRAL
                     RMLGGTAGYHVPHRFTEGYGIRQDALEKAVNEGYKLVVSVDCGITAHEPLHWARSNGL
                     DIIVTDHHLPDADEGAPPALAVLNPNQHGCDYPDKNLAGVGVAFKLIHALFRERGREV
                     QVPGFLKMVAIGTVADVAKLVGENRAIVALGLSDLPRAVNPGLRALIEIAGCGDDSEM
                     TAYDLGFRIGPRINAAGRMDAARAVVELFNAKDKDEARRLAEHLDTRNRERKEAQREI
                     FNRAIEEFESGAERDSQTHAAVIAGDGWHRGVIGLAASKIAERLNRPCVVISLDGDIG
                     HGSARSIEAYHLFNGLTACRDLLEKFGGHSHAAGLVIRRDRVAEFRRRLNEHAASCLT
                     GEDLVPTLNIDAEVGAPELSFQLSQELRSLEPFGAGNPRPLFVTRGLRVLSEPQVIKE
                     QHLKLRVAGENNRPFEAIWWRGVEEAKRTPLANQRIDLAYELETNSWNGEIRLQLNVK
                     DMQI"
BASE COUNT          445 a          671 c          586 g          436 t
ORIGIN      
        1 cgacgattcc cctgatttcc ttcgataacg caggtgcttc agatttcaaa cggaacggcg
       61 tgttatggcg catcttgtaa taagacacgc cgacaaaaac cgcgccggca atcaaaagaa
      121 acagcgcgag cgcccgagcg atcgcaggca cacgcgcccg caggtcaact gcggtgattc
      181 tttttcgcgg caacgcttgc ataacttcta aatgatctca gccacagagg cgcagaggcg
      241 cagagtagaa aattaaaacc gaactgtgtc gatctcgcgc ttctctacct tttctccgtg
      301 actctgtgcc tccgtggcta aatttgcatg tccttcacat tcaactgcaa tctaatctcg
      361 ccgttccaac tgtttgtctc cagttcgtat gcgagatcga tgcgctgatt ggccagcggc
      421 gttcgcttag cttcttcgac gccgcgccac caaattgctt cgaacgggcg attgttctcg
      481 ccggcgacgc gcaactttag atgctgctcc ttaatcactt gcggctcgct gagcacgcga
      541 agaccgcgcg tgacaaagag cggccgcgga ttgcccgcgc cgaacggctc caaggaacga
      601 agttcctgcg aaagctgaaa acttagttct ggcgcgccaa cttctgcatc gatgttcagc
      661 gttggaacca agtcttctcc agtcaaacac gaggcggcgt gttcgttcaa gcggcggcga
      721 aactccgcca ctcgatcgcg gcgaattacg agcccggccg cgtgggaatg cccgccgaac
      781 ttctcaagca aatcgcggca cgccgtcagg ccgttgaaaa gatgatacgc ctcgatgctg
      841 cgcgccgagc catggccgat gtcgccgtcg agcgaaatga ccacgcacgg tcgattcaag
      901 cgctcggcga tcttcgacgc tgccaggccg atcacgccac gatgccatcc atcacccgcg
      961 atcaccgcgg cgtgcgtctg tgaatcgcgc tcggcgccac tttcaaactc ttcgatcgca
     1021 cggttaaaga tctcgcgctg cgcttctttg cgctcgcgat tgcgcgtgtc gagatgctca
     1081 gccaaacgcc gtgcttcatc tttgtctttg gcattgaaca gttcgacgac tgcgcgcgcc
     1141 gcgtccatgc ggcccgccgc attgattcta ggtccgatgc gaaagcccag gtcgtatgcg
     1201 gtcatctcgc tgtcgtcgcc gcagcccgcg atttcaatca gtgcgcgcag tcccggattc
     1261 accgcgcgcg gcaaatccga aagaccgagc gcgacaatcg cgcgattctc gccgaccaac
     1321 tttgccacgt cggcgaccgt gccgatcgcg accatcttga gaaacccggg cacctgcact
     1381 tcgcgcccac gctcacgaaa cagcgcatga attagcttga atgcgacgcc aacgccggcg
     1441 agattcttat cgggataatc gcagccatgc tgattcggat ttaagacagc aagcgcaggc
     1501 ggcgcgcctt cgtccgcgtc cggcagatga tgatcggtga cgatgatgtc caggccattc
     1561 gagcgggccc agtgcaaagg ctcgtgcgca gttatgccgc aatcgacgct gacgaccagc
     1621 ttgtagcctt cgttgactgc tttctccagc gcgtcttggc gaatgccata accttcggtg
     1681 aaacgatgcg gcacgtgata gcccgcagtc cctcccaaca tgcgcagcgc gcgaagcaga
     1741 accgctgtcc ccgtcgtgcc atcaacgtcg taatctccat agatgagaac cggctcgtgc
     1801 ccgtcgatcg ctcgcagcac tctagcgact gcatcagaca tgccaagcat cagggatgga
     1861 tcgtgcagtt gatcgagaga gggattgagg aaggcttgcg ccgaactaac gtcttggtgg
     1921 ccgcgcgcca ttagcagtcc ggcgacgatc ggcgacacac cgagcgcact cgcaagtgct
     1981 tccgcgcgac ctttgtcgtg ctcgcgcact acccatcgtt tgacgctcat gttcgtggaa
     2041 gtttactggt tgtgtcgccc aagagcgaac aggaccaacg tcggaggtcg ggcagtagcc
     2101 cgcctctaaa cgattcgagc cttcatcaca gcggcatg
//
LOCUS       DASZZE010000054         2556 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_17735, whole genome shotgun sequence.
ACCESSION   DASZZE010000054 DASZZE010000000
VERSION     DASZZE010000054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2556)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2556)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2556
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17735"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..681
                     /gene="argG"
                     /locus_tag="VHD88_00955"
     CDS             <1..681
                     /gene="argG"
                     /locus_tag="VHD88_00955"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR00032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004055 - argininosuccinate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HVS20380.1"
                     /translation="IDKPYSTDRNLMHVSYEGGILEDPWAEPPENIFQMTVSPENAKA
                     EAEYVEIGFAHGEPVSVDGERLDPVALLSKLNEIGGAHGIGRVDLVENRFVGMKSRGV
                     YETPGVTILQSAHRALESITLDREVVRLRDSLSVKFAECVYYGFWFAPEFDLMRKLND
                     EMQQPVNGDVRLKLYRGNVIVVGRRSPNSLYDERVATFEADTVYNQRDAEGFIKLNAL
                     RLRLRGGQ"
     gene            678..1790
                     /locus_tag="VHD88_00960"
     CDS             678..1790
                     /locus_tag="VHD88_00960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20381.1"
                     /translation="MKIIEVDKIGSATSPLNLSRTMSVVDSNGAPRAGDVVAVRVLTD
                     NATYNMLELPTGRLAKVNPGDLLVGVLGRRRALKGFVGDVPETAAAGDELHLLNLGGV
                     IGSCSGHHSSLNDAIKVEVIGLVCDDQGRVKNIADVSLPLRERLDSSAPLVVIAGACM
                     NSGKTYAATEIIQQGTRAGLRVAAAKLSGIACLRDTLNMADHGAIATASFLDCGLPST
                     VGAGDLAPVAKAIIARLNESAPDLIVIELGDGILGGYSVESVFEDAEFREAMAALVFC
                     ASDYVGAWGGIELFRRRGIEVDLIAGSVTDSKMGEDYIEHEFKVPAGNVRRDGARLFE
                     IIQKKVSSFEFRVSSQTTEPGTKEFAISSKTGDKAA"
     gene            1787..>2556
                     /gene="argC"
                     /locus_tag="VHD88_00965"
     CDS             1787..>2556
                     /gene="argC"
                     /locus_tag="VHD88_00965"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: protein motif:HMM:TIGR01850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003942 -
                     N-acetyl-gamma-glutamyl-phosphate reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HVS20382.1"
                     /translation="MNSKPETRNSKLRVAIFGGSGYGGSELLRILLLHPNAEISFVTA
                     NEHAGKAVSEVHRNLLGLTDLKFSKVPEDFERLADTDCVFFALPHGQAMEIAPKLPAS
                     LKVIDLSGDFRLRDAESFAQHYGRAHTAMDAQSQFVYGLTETNRDAIKTARCVANPGC
                     FATATLLGLAPLVANDRLSCRVIVDAKTGSSGSGAKAAANTHHPQRSNSFYAYKPFVH
                     QHVPEIEQELKSLGEWNNELIFMTHSLPVSRGIFASIYT"
BASE COUNT          531 a          677 c          807 g          541 t
ORIGIN      
        1 atcgacaagc cctattcaac cgatcgcaac ttgatgcacg tttcgtatga aggcggaatc
       61 ctcgaagacc cctgggctga gccgccagag aacatttttc aaatgacggt ttcgcctgag
      121 aatgcgaaag ccgaggccga atacgtcgaa atcggtttcg cgcacggcga gccagtgtcc
      181 gtcgatggtg agcgtttgga tccggttgct cttttatcaa agctgaatga aattggcggc
      241 gcgcacggaa tcggccgcgt cgatctggtc gagaatcgtt tcgtcggcat gaagtcgcgc
      301 ggcgtttacg agacgcccgg cgtcaccatt ctgcaatccg cgcatcgcgc attggaatca
      361 atcacgctgg atcgtgaagt ggtgcgtttg cgcgattcgc tcagcgtgaa gtttgccgag
      421 tgtgtctatt acggcttctg gtttgcgccg gagttcgatt tgatgcgcaa gctgaacgat
      481 gaaatgcagc agccggtgaa tggtgacgtg cggctgaaac tttatcgcgg gaacgtgatc
      541 gtggtggggc gtcgctcacc gaattcgctt tacgatgagc gcgtcgcgac ctttgaagca
      601 gacaccgttt acaaccagcg cgatgcggaa ggctttatca agctgaatgc gctgcgtctg
      661 agattgcgag gtggccagtg aaaatcatcg aagtggacaa aatcgggtcg gcgacctcgc
      721 cgctgaatct gtcgcgcacg atgtcggtcg tcgattcaaa cggcgcgccg cgcgcgggtg
      781 acgtcgtcgc cgtgcgtgtg ctaaccgaca acgcgactta caacatgctg gaactgccga
      841 cgggcagact ggcgaaagta aatcccggcg atttgctcgt gggtgtgctc ggacggcggc
      901 gcgcgctgaa gggcttcgtt ggcgatgttc ctgaaactgc cgcggccgga gatgagcttc
      961 acctcctcaa tcttggcggc gtgattggga gttgcagtgg tcatcactcg agcctcaacg
     1021 acgcgatcaa agtcgaagtg atcggtctgg tctgcgacga tcagggcaga gtgaagaaca
     1081 tcgcggacgt cagtttgccg ctgcgtgaga ggcttgattc ttcagcgccg ctggtggtca
     1141 tcgccggagc gtgcatgaac agcggcaaga cttacgccgc gaccgagatc attcagcagg
     1201 gaacgcgcgc cggcctgcgc gtggccgcgg cgaaactgtc ggggattgct tgtctgcggg
     1261 acacgctgaa catggccgat catggcgcga tcgcgacggc gagctttctc gattgcggct
     1321 tgccttcgac ggttggcgcc ggcgacttag cgccggtagc gaaagcgatc atcgcgcggc
     1381 tgaacgaaag cgcgccggac ttgatcgtga ttgaacttgg tgacggcata ctcggcggtt
     1441 actcagtcga gtccgtcttt gaagatgccg agtttcgcga ggccatggcg gcgctggtgt
     1501 tttgcgcttc ggattacgtt ggagcctggg gcggaatcga gttgttccgc cggcgcggga
     1561 tcgaagtgga cttgattgcc ggttcggtaa ccgattcgaa gatgggcgaa gactacattg
     1621 agcacgagtt caaagtgccc gcgggcaatg tgcggcggga cggagcgaga ctcttcgaga
     1681 taattcaaaa gaaagtttcg agtttcgagt ttcgagtttc gagtcaaacc acggaacccg
     1741 ggacgaagga gtttgcgatt tcttctaaaa caggagacaa ggccgcgtga actcgaaacc
     1801 cgaaactcga aactcgaaac tccgggtcgc aatctttggc ggctcaggtt acggcggatc
     1861 ggaactgctg cgcattctgc tgctccatcc aaacgcagaa atcagttttg ttaccgcgaa
     1921 cgagcatgcc ggcaaggctg tcagcgaagt ccaccgcaat cttctcgggc tgactgatct
     1981 gaaattcagc aaggtgccgg aagattttga gaggcttgcg gatacggact gcgtgttctt
     2041 cgccctgccg cacggacagg cgatggaaat cgcgccgaaa ctcccggcca gcttgaaagt
     2101 gatcgatctc tccggggact ttcgtctgcg cgacgcggag agtttcgcgc aacactacgg
     2161 ccgcgcgcac accgcgatgg atgcgcagtc gcagtttgtt tatgggctga cggaaactaa
     2221 tcgcgatgcg atcaagacgg cgcgttgcgt cgcgaatccc ggatgtttcg cgacggcgac
     2281 gctgctggga ctggcgccat tggtcgcaaa cgatcggttg agttgccggg tgatcgttga
     2341 cgcaaagacc ggttcgtcag gctccggcgc aaaggcggcg gcgaacacgc atcatccgca
     2401 gcgcagcaac tcgttctacg cttacaagcc ttttgtccat caacacgtgc ccgagatcga
     2461 acaggagctg aagagcctcg gcgaatggaa caacgaactc attttcatga cgcactcttt
     2521 gcccgtgtcg cgtggcatct tcgcttcgat ctacac
//
LOCUS       DASZZE010000055         3160 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_17749, whole genome shotgun sequence.
ACCESSION   DASZZE010000055 DASZZE010000000
VERSION     DASZZE010000055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3160)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3160)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3160
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17749"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..392)
                     /locus_tag="VHD88_00970"
     CDS             complement(<1..392)
                     /locus_tag="VHD88_00970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20383.1"
                     /translation="MFRKISAALIASILITVSVGVFSLARAKETEPLRVRTPLNIAIL
                     IQDDLTSQVGNEMGVTREFIRSLPAGSRVMVGYITSGSLQVRQPFTTDLNAAANSLRI
                     PLASTAASSYDPYIEVIEAMKKFDSSWKG"
     gene            complement(530..934)
                     /locus_tag="VHD88_00975"
     CDS             complement(530..934)
                     /locus_tag="VHD88_00975"
                     /inference="COORDINATES: protein motif:HMM:NF016056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF393 domain-containing protein"
                     /protein_id="HVS20384.1"
                     /translation="MTRGSTIEVYTDGQCNLCRWMRARVELLDRDHRIEWLDFNDSEV
                     LQRAAPHTREEMADEMHARTADGRWTKGYFAWIEVIRVQPRWKWLAPILSIWPFTKLG
                     PIFYRWLAARRYTLFGVPPPCDASGVCQLHSR"
     gene            1111..1731
                     /locus_tag="VHD88_00980"
     CDS             1111..1731
                     /locus_tag="VHD88_00980"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HVS20385.1"
                     /translation="MIKRSVIVAIIIIVVASLAVVSIAKYRATTQPSIASGLAPATNA
                     NVVVSLSDLQPDALIAAANAPVAPAFAAGTWINSDSLTLDKLRGHVVLVEFWTFGCYN
                     CRNTLPSVKEWDAKYRDRGLTIVGVHTPETTSEYDVENVRREVPSLGIKYPVVTDNDY
                     KTWKAYNVEAWPTIFVIDKQGRIRWLHVGEGRYDETERVIKTLLSE"
     gene            2023..>3160
                     /locus_tag="VHD88_00985"
     CDS             2023..>3160
                     /locus_tag="VHD88_00985"
                     /inference="COORDINATES: protein motif:HMM:NF012239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HVS20386.1"
                     /translation="MKAYDTESIRNLAVIGHGDAGKTQLVSSLLYVAGATPRWGKVDE
                     GTTVTDHEEDSIARKITLNTALAHLEHRETKVNIIDTPGYAAFVSHARPACRVADCGV
                     VVVDGVKGVEVQTEKTWVYANEFLLPRIMVVTKLDKEHSDIGIALDSAHNVFNRAIIP
                     FTLPIGKEHNFKGVVDVVHMKAYEFDENGKGKEINIPSEGRDVVDKTRERLVELVAES
                     DDALMEKYFEQGTLDDSDVLPNIGKAIANSKLSPVFAVSTMTLVGLATLLDHIIEFAP
                     NPAAHEAEHGKDEKGEPASRKYSNSEPFSAYCFRTIADPFAGRINVFKIMSGKVGTDA
                     NVYNSTRSASERLGALHTMQGKQIDKVPEANAGDIIACVKLKETQ"
BASE COUNT          758 a          865 c          852 g          685 t
ORIGIN      
        1 cctttccaac tggaatcaaa cttcttcatt gcctcgatca cttcgatgta gggatcgtaa
       61 gacgacgcgg ctgtgctggc cagcggaatt cgcagcgagt tcgccgccgc gttcagatca
      121 gttgtgaagg gttgtcgcac ttgcaaactc ccagatgtga tgtagccaac catcacgcgc
      181 gaaccagcgg gcagtgaacg aatgaactcg cgcgtcacac ccatttcgtt gccaacctgc
      241 gaagtcagat catcctggat cagaatcgcg atgttgagcg gcgtgcgcac gcggagcggc
      301 tctgtttctt tcgctcgcgc caaagagaaa acaccgacac tcacggtgat cagaattgat
      361 gcgatcaaag ctgcagaaat ctttctaaac atacttccac ctcaacggcg agaccttcgc
      421 cgataatttc ttttcaatga cttgtctggg tcggttttaa gatgcttcag ttagcgtaaa
      481 agttggcgga aacccgaccg tcagggaggg tgcattacag agtgtgcgct cagcgactat
      541 gaagttggca cacgccgctg gcatcacacg gcggcggtac accaaagagc gtgtagcgac
      601 gcgcggcgag ccagcgataa aagatcggtc cgagtttcgt aaacggccag atcgacagaa
      661 tcggtgctaa ccatttccat cgcggctgca cgcgaatcac ttcgatccac gcgaaataac
      721 ctttagtcca acgaccgtcc gcggtgcgtg cgtgcatctc gtcagccatt tcttcgcgcg
      781 tgtgcggcgc cgcgcgttgc aaaacttcag agtcgttgaa gtccagccac tcaattcgat
      841 gatcgcgatc gagcagctca acgcgcgcgc gcatccagcg acacaggttg cactggccgt
      901 cggtgtaaac ttcgatcgtg ctccctcgtg tcattggttt agaggcgggc tacctctcgc
      961 caaaacgtct tctctttgag caaccaccaa gatacaatag cgcgcgattg cgagcaatcg
     1021 gttactacgg gacgaaggta cagaaccgcg cgcggtagcg agcgggtagt agccgagaca
     1081 tgcaggaacg ctcgccgtgc cggaggaatc atgatcaagc gaagcgtaat tgtagccatc
     1141 attatcatcg tcgttgcaag cctggccgtc gtgtcgatcg ccaaataccg agccacgacg
     1201 cagccttcga ttgcgagcgg ccttgcgccg gcgacgaatg cgaacgttgt tgtcagtctt
     1261 tccgatcttc aacctgacgc gttgattgcc gcggcgaatg ctcccgtagc gccggcgttt
     1321 gccgccggca catggatcaa ctctgattcg ttgacgctgg acaagctgcg cggccatgta
     1381 gtgctcgtcg agttctggac ctttggctgc tacaactgtc gcaatacttt gccttcggtc
     1441 aaagagtggg atgcgaagta tcgcgatcgc ggcctgacaa tcgtcggagt gcacacgcct
     1501 gaaaccacca gcgaatacga cgttgaaaac gtgcgccgcg aagtgccttc cctgggaatc
     1561 aaatatccgg tagtcacgga caatgattac aaaacgtgga aagcctataa cgtggaagca
     1621 tggcccacga ttttcgtcat cgacaaacag ggccgcattc gctggctgca cgtcggcgaa
     1681 gggcgttatg acgagactga gcgagtgatt aagacgttgt tgtcggaata actacaagag
     1741 cagttaaccg caaaggatca cgcagagggc gcgaaggagc ttcttcaggg cctcttatct
     1801 tcctctgtgt tgcctgcgaa gcctttgcgt cctctgcgtt ttaatacttc tctggtcgtc
     1861 agcaagcagg aaactgaagt cgatcctcgc ttgccattcc cctcgccgct cggctaaatt
     1921 accgactcaa tccgcagtca catcctgtct tttcattgca cgatgaaaac cgagggatgt
     1981 ctgtcgccag aattcgttct ctgaaaggat tcactcgcgt ttatgaaagc ttacgacacc
     2041 gaatcgattc gcaaccttgc ggtcattgga cacggcgacg cagggaagac gcaactggtt
     2101 agttcccttc tctacgtcgc aggcgccacg ccccgctggg gcaaagtcga tgagggcacg
     2161 accgtcaccg atcatgaaga agattccatt gcccgcaaaa tcacgctgaa caccgcgctc
     2221 gcccacctcg aacatcgcga aaccaaagtc aacatcatcg acacgccggg ttacgctgcg
     2281 tttgtttcgc acgcgcgacc tgcatgtcgc gtcgcggact gtggcgtcgt cgtcgtggat
     2341 ggcgtcaaag gggtcgaagt gcagacggag aagacgtggg tctatgcgaa tgaatttttg
     2401 ctgccgcgca tcatggtggt caccaagtta gacaaagagc attcggatat tggaatcgcg
     2461 ctcgacagtg cgcacaatgt ttttaaccgc gcgatcattc ccttcacgct gcctatcgga
     2521 aaagaacaca acttcaaagg cgtcgttgac gtcgtccaca tgaaggctta cgagtttgat
     2581 gaaaacggta agggcaaaga gataaatatt ccttcagagg gccgcgacgt agttgataag
     2641 acgcgagagc gtttggttga actggtcgcc gaatcagacg acgctttaat ggaaaagtat
     2701 tttgagcaag gaacgctgga tgattcagat gtgctgccga acatcggcaa agcaatcgcc
     2761 aacagcaagc tctctccagt cttcgcagtt tcgacaatga ctctggttgg tctggcaact
     2821 ttgctcgatc acattatcga gtttgctccg aatcctgcag ctcatgaagc cgagcatgga
     2881 aaagatgaaa aaggcgaacc ggcttcgcga aaatattcca acagcgaacc tttttccgct
     2941 tactgcttcc gcacgatcgc cgatccgttt gccggtcgta tcaacgtctt caagatcatg
     3001 agcggcaagg tcggcacgga cgcgaacgtt tacaattcga cgcgcagcgc ctcggaacgt
     3061 ctcggcgcgc tgcacacgat gcaaggaaag cagatcgaca aagttcccga agcaaacgcg
     3121 ggcgacatca tcgcctgcgt taagttgaaa gagacgcaat
//
LOCUS       DASZZE010000056         4045 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_197506, whole genome shotgun sequence.
ACCESSION   DASZZE010000056 DASZZE010000000
VERSION     DASZZE010000056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4045)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4045)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4045
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_197506"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..575)
                     /locus_tag="VHD88_00990"
     CDS             complement(<1..575)
                     /locus_tag="VHD88_00990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20387.1"
                     /translation="MVHSRKAFLPIVLVLIIIAATASAQQPTCALKLDQLPLAPELRG
                     FHLGMTFDQVKTRVPQVQFDRPDQFGVVKTSINPFFDPRYDKASFADVRTISLDFLDG
                     QLVALWIGYENTFKWQTLDEFVAGISNSLNLPTRWSTKRGGQQLTCDGFSISVSLIAG
                     SPSIRITNETAQETIASRREEAAAAAEAADS"
     gene            complement(847..1254)
                     /locus_tag="VHD88_00995"
     CDS             complement(847..1254)
                     /locus_tag="VHD88_00995"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HVS20388.1"
                     /translation="MESQIAKDYARESRRTILLVEDFDDTRLMMKLWLAKNGYEVIEA
                     QSGPEAIRLAQNAQPDLIIMDVMMPGMSGLDATRRIREHEALRKTPIVAVSAYGADEY
                     RDRAIEAGCNEYVSTPFEPRALGELIKRLIRQR"
     gene            complement(1283..1359)
                     /locus_tag="VHD88_01000"
     tRNA            complement(1283..1359)
                     /locus_tag="VHD88_01000"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1323..1325),aa:Arg,seq:ccg)
     gene            complement(1520..2140)
                     /locus_tag="VHD88_01005"
     CDS             complement(1520..2140)
                     /locus_tag="VHD88_01005"
                     /inference="COORDINATES: protein motif:HMM:NF013982.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF47 family protein"
                     /protein_id="HVS20389.1"
                     /translation="MFAKLLPREEQYFSLFAQMTSYINDAATTLVEMMAHSNSDYEEY
                     VQRIKSIEHACDDLTHTVATRLNQSFITPYDREDIYMMSKALDDVVDLIDGAARAVVM
                     YDIHETTEPAKQLAGVIQRMALQLHQVVSILNKPKGVTERLVELHRLENEGDDIYQRA
                     VGGLFHETRDPLTVIKWKDVYEKLEAAIDRCENVANIIEGVIIKHS"
     gene            2448..3431
                     /locus_tag="VHD88_01010"
     CDS             2448..3431
                     /locus_tag="VHD88_01010"
                     /inference="COORDINATES: protein motif:HMM:TIGR00393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HVS20390.1"
                     /translation="MAERSDHLQVVELLRAEAAAIGKAAARLQAKDVDRVIEILTSCK
                     GKVVLLGVGKSGIIAQKIAATMTSSGTAAIALHPSDALHGGLGILTSDDVVIMLSNSG
                     ETDELLKLLPFVKRRGVLLVAIAGNVKSTLAQSADAVLDASVDAEACPLNLAPTTSTT
                     VALAIGDALAMTLMQAKGLTSDDFAFNHPAGQIGKRLTLRVADLMHSGSQNPTIASDA
                     AWLEIVSAITRYGLGAVNVIDDHGHLLGIVTDGDLRRSLERINLADPTSIKSDTLMTR
                     DPIVTNPEMLAYDALRLMEDRPSQINVLPVVNGDRLCVGLIRLHDIVRSGL"
     gene            3752..>4045
                     /locus_tag="VHD88_01015"
     CDS             3752..>4045
                     /locus_tag="VHD88_01015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20391.1"
                     /translation="MTVNEEFLNSFLAAIFDNLKEPAMPLTIGGASSGGQNGCASEIR
                     LKREVEGVRTAVHFESGRIVGPLAFAGAYSSTLMGCIEFSGSADSEVNLEFDQA"
BASE COUNT          881 a         1065 c         1165 g          934 t
ORIGIN      
        1 atcgagtccg ccgcctcggc tgctgcggct gcttcttctc gacgactagc gatcgtttcc
       61 tgcgcagttt cattggtgat ccgaatgctc ggactgcctg cgattaacga aacggaaatc
      121 gagaatccat cgcacgtcaa ctgttgcccg ccgcgttttg ttgaccatcg cgtcggcaga
      181 ttcagagagt tgctaatgcc ggccacgaac tcatcgagcg tctgccattt gaacgtgttt
      241 tcatagccga tccacaaagc caccagttgt ccatcgagga agtccagcga gatcgtgcgt
      301 acatccgcga agctggcttt atcataccgc ggatcgaaaa agggattgat gctggttttg
      361 acgacgccaa actgatcggg gcggtcaaac tgaacctgcg gcacgcgcgt cttgacttga
      421 tcaaaggtca tgccgagatg aaagccgcgc aactcgggcg ccaacggcaa ctgatcgagt
      481 ttgagcgcgc acgtcggttg ctgagctgat gcggttgcag caatgataat caagacgaga
      541 acaatgggta agaacgcttt gcgagaatga accattcctg aaacctcaga agagtagcag
      601 ggccttgtca gtccgcgtag cggacgaacg aaaatagccc agcgattcat cgctgggaaa
      661 gagagctata cgtgtccaat caagtccgcg aagcggacga cagaaatctt taggccgtct
      721 tttctcaaac gaatatttct gtcgtccgtt tcacgggctt ggattatcaa tggcggcgat
      781 tacccagcag taaactgctg ggctatttcc gatcgtccgc ttcgcggact tgcagaaaac
      841 ggaaagctat ctctgtctta ttaatctctt gatcaattct ccgagcgcgc gaggctcgaa
      901 aggggtcgag acgtattcgt tgcatccggc ctcgatcgct ctatcgcgat attcgtcggc
      961 gccgtaagcg gacacagcga cgattggcgt cttgcgcaga gcctcatgct cgcgtattcg
     1021 gcgcgtggcg tcaagcccac tcatgcccgg catcatcacg tccatgatga tcagatcggg
     1081 ttgcgcgttc tgggctaacc gaatcgcttc tggtccactc tgtgcctcga tcacttcgta
     1141 gccgtttttc gcgagccaaa gcttcatcat cagacgcgtg tcgtcgaaat cctcgacgag
     1201 cagaatcgtg cgccgagact cgcgcgcgta gtcttttgcg atttgacttt ccatgacgcc
     1261 acattggtgg atgggcaaga cgtggtaccc gcggcagggg tcgaacctgc gacctttcgc
     1321 tccggaggcg aacgctctaa tccactgagc tacgcgggca cgagggggat gattagacga
     1381 tagcatagcg acaaatgcgg agctagggga tagggtgttg ggtttcgggt ttagcgtgtt
     1441 gagttatttc tgagttcttg atcgcgctgc gggtcgaaga tttatctaca ccctaacccc
     1501 tacacccaaa gccccggtgt taggagtgct tgataatcac gccttcgatg atgttggcga
     1561 cgttctcgca gcgatcgatc gcggcttcca gcttttcgta aacatctttc cacttgatca
     1621 cggtcagggg atcgcgggtc tcgtggaaga gcccgccgac cgcgcgttga tagatgtcgt
     1681 cgccttcgtt ctcaaggcgg tgcagttcga ccaggcgttc ggtgactcct ttcggtttat
     1741 tcagaattga aaccacctga tgcagttgca gagccatgcg ttgaatcacg ccggccagtt
     1801 gcttcgccgg ttcggtggtt tcgtgaatgt cgtacatgac caccgcgcgc gccgcgccgt
     1861 cgatcaaatc gaccacgtcg tccagcgcct ttgacatcat gtaaatgtct tcgcggtcgt
     1921 atggtgtgat gaatgattga tttaagcgag tcgcgacggt gtgtgtcagg tcatcgcagg
     1981 cgtgctcgat acttttgatg cgctgcacgt attcctcgta atcactattg ctgtgggcca
     2041 tcatttcgac cagcgtggtg gcagcatcgt taatgtagga agtcatctgc gcgaacagcg
     2101 aaaagtactg ttcttcacgc ggtaacagtt ttgcgaacat tagaaactcc tgagaaattc
     2161 tatttgggat tgcgaaagcc cggatcgatc ggagagcggc aatataacgg aagaccgcgc
     2221 ggatgtctat gtttcatgtc tcgtctcagg cttcaagaat ctgtaggtag gactgcagtt
     2281 gttgcccctc tcccatttgg gagaggggct ggggagaggg gctgtgtcgg gtaagaccct
     2341 gccccttaat cccctcccct taggggaggg gacaaaacac cggtgaaaga actgagggcg
     2401 aatcaccgct tgcaaatata tgcgcgactc gtatatcaag gtgtggcatg gctgaaagat
     2461 ccgatcactt gcaggtggtt gaattgcttc gcgccgaagc cgcagcgatt ggtaaagccg
     2521 cggcgcgttt gcaagcgaag gacgttgacc gcgtgatcga gatactaacg agctgcaaag
     2581 ggaaggtcgt cctgctgggc gtcggtaaat cgggcatcat cgcgcaaaag atcgcagcca
     2641 ctatgaccag cagcggcact gcggccatcg ctcttcaccc gtcggacgct ttgcatggcg
     2701 ggctcggcat tctgacatct gacgatgtgg tgatcatgtt aagcaacagc ggcgagactg
     2761 acgagctgct caagctcttg ccgtttgtga aacggcgggg tgtgctgctc gtggcgatcg
     2821 ccggcaacgt gaaatcgacg ctggcacaga gcgctgacgc tgtgctcgat gcttcagtgg
     2881 acgcagaggc gtgcccgttg aatctcgcgc cgacaaccag cacaaccgtg gcgctggcga
     2941 ttggtgacgc actggcaatg acgctgatgc aggcgaaagg actcacctca gacgattttg
     3001 ctttcaatca tcccgccgga caaataggca agcgtctgac tttgcgcgtc gcggatttga
     3061 tgcatagcgg ttcccaaaat ccgactattg catcggatgc cgcatggctg gagatcgttt
     3121 ccgcgatcac gcgttacggt ctgggcgcag tcaacgtcat cgatgaccac ggccatctgt
     3181 tggggatcgt cacggacggc gatttgcgcc gttcgcttga gcgaatcaac cttgccgacc
     3241 cgaccagcat caaaagcgat acgctgatga cgcgcgatcc gatcgtgacg aatccagaaa
     3301 tgcttgccta tgacgctctg cgcttgatgg aagaccggcc atcacagatc aatgtgctgc
     3361 cggtcgtcaa tggcgatcgg ttgtgcgtcg gcctgattcg tttgcacgac atcgtgcgca
     3421 gcgggttgtg attagagcct cgaaggatcg ggatgaactc gccaggacgg attcgaaacg
     3481 caaaggtcgc gaaggtctcc gcaaaggatc gcaaagagaa actcatcgcg cacctttgcg
     3541 tcttcctttg cgcactttgc gttaaagttg aaaacctatt actactcaag tgaggaactt
     3601 aattaaaatg aagaatagag tttcggctat tccaagacta ctaaccccta ttgttctcat
     3661 tggactgttt tcgtttgcga acgtattcgc gcaggaatca actgccgctc gcaaccgccg
     3721 cgcgagtaca tcaccggcgg cggaggcgac ggtgactgtc aacgaggagt ttctaaattc
     3781 ctttctcgcc gcaatcttcg acaatttgaa agagcctgcg atgccgctga cgatcggcgg
     3841 cgcctcgtcc ggcggacaga atggctgtgc cagcgagatc agactgaagc gcgaagtcga
     3901 aggcgtgcgc acggccgtgc atttcgagag cggccgtatc gtcgggccgc tggcgttcgc
     3961 tggagcttac agctcgacgt tgatgggatg tatagagttc tctggctctg cggactctga
     4021 agtaaacctg gaattcgatc aagcg
//
LOCUS       DASZZE010000057         1741 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_181211, whole genome shotgun sequence.
ACCESSION   DASZZE010000057 DASZZE010000000
VERSION     DASZZE010000057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1741)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1741)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1741
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_181211"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1065)
                     /locus_tag="VHD88_01020"
     CDS             complement(<1..1065)
                     /locus_tag="VHD88_01020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HVS20392.1"
                     /translation="MLDLARKIQMKRIASFLFALLVGIVAAGHASAQSGRVKSASAAG
                     ASGEATKTSDETRVDPNDSRTAAQLYIDADNYAQKNFDAFEKRHMPYDSQLAEMIRQE
                     QRDLAARYATLLTTRKLKDNDTYYLGMLYNLARNYDGALEAMRRFLAENPNAIGEPAQ
                     NARAIVIIQAAKRGVLPEAESRLAEYAKNQPQLADDRYTLEDWMVTGYFNVKDYEHAL
                     PHAQEMLKAAKLAGEKKGPFERDKMMNRAVTLLSETDLKLKKKGEAVAAVQELRHLAL
                     QLPSGNLYKLATRRLLEIAPSIDLFKSFNDTPATDRDPREIVAQEWIDQQPVKLADLR
                     GRVVLLDFWATWCGPCRATFP"
     gene            complement(1202..>1741)
                     /locus_tag="VHD88_01025"
     CDS             complement(1202..>1741)
                     /locus_tag="VHD88_01025"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HVS20393.1"
                     /translation="AAGAWTSFINSPGASLPSIKIEPVRGQMLCFEARPQIARHVIYS
                     SRGYLVPRRDGRVLAGSTAERVGFDKSVTDEGRNAIKLMALGISPALKHLPLIDSWAG
                     FRPRAEDGLPVLGPCEGIEGLVYATGHYRNGILLAPVTGELIADAIVEGATSSLPAAF
                     SPKRFRPTEGKNSLNRVCV"
BASE COUNT          348 a          511 c          486 g          396 t
ORIGIN      
        1 cggaaacgtc gcgcgacacg ggccgcacca cgtcgcccaa aaatccagca gcaccactcg
       61 cccgcgcaaa tccgctagct tcaccggctg ctgatcgatc cattcctgtg cgacgatttc
      121 acgcgggtct cggtctgtcg ccggtgtgtc gttaaatgat ttgaagaggt cgatcgatgg
      181 agcgatttca agcaaacgtc tcgtcgcgag tttgtacagg ttacctgacg gcaactggag
      241 cgccagatgg cgaagctcct gcaccgcagc gacggcttcg cctttcttct tcagtttcag
      301 atcggtttcc gagagcagcg tgaccgcgcg gttcatcatc ttgtcccgct cgaacggccc
      361 tttcttctcg cccgccaact tagccgcctt caacatctct tgcgcgtgtg gcagcgcgtg
      421 ttcgtaatcc ttgacgttaa agtaaccggt caccatccaa tcttcgagcg tgtaacgatc
      481 gtcggcgagc tgcggctggt tcttcgcgta ctcagccaga cgactttccg cctccggcag
      541 cacgccccgc ttcgctgctt gaattatgac gatcgcgcga gcgttttgag cgggttcgcc
      601 tatcgcgttc ggattctcag caagaaaacg gcgcatcgct tcgagcgcgc catcataatt
      661 gcgagcgagg ttgtaaagca tcccgagata gtaagtgtcg ttgtctttca gctttcgcgt
      721 cgtcaacaga gtcgcatacc gagcggcgag atcgcgttgc tcttgcctga tcatttccgc
      781 gagctgcgag tcataaggca tgtggcgctt ttcaaaggcg tcaaaatttt tctgcgcata
      841 gttgtccgcg tcaatgtaga gttgtgccgc ggtccgcgaa tcgtttgggt caacgcgcgt
      901 ttcgtcagag gtcttggttg cttcgccgct tgcgccggca gcgctcgcgg acttcactcg
      961 accggattga gcggacgcgt ggccggccgc gacgattccg acgagtaaag caaacaagaa
     1021 agaagcaatg cgtttcattt gaatcttgcg cgcaaggtcg agcatttcga cgatcgtctg
     1081 gggactttga gcatgttagg ctacggtgat tgtgctgtca aaacaccggt cccgatgcga
     1141 attgtttaga ggcgggctaa cgcccgccgt ctttctgttt ttggcgggca gtagcccgcc
     1201 cctaaacaca gactctattc agagagttct tgccttcggt tgggcgaaaa cgttttggtg
     1261 aaaacgctgc cggcaatgac gatgtcgcgc cctccacaat cgcatccgca attaactctc
     1321 ccgtgaccgg cgccagcaga attccgttgc ggtagtgtcc ggtggcatag accaatcctt
     1381 caattccttc acatggacca agcacgggca gaccatcttc ggcgcgtgga cgaaagccag
     1441 cccacgaatc gatcagagga aggtgcttca atgcgggaga gattcccagc gccatcaact
     1501 tgatcgcgtt tcggccttcg tcggttacgc tcttatcaaa gccaacgcgc tcggcagttg
     1561 agccggccag cacacgccca tcacgacgcg gcacgagata gccgcgcgag ctgtaaatca
     1621 cgtgacgcgc gatttgtggc cgcgcttcaa aacaaagcat ctgaccgcgg accggttcga
     1681 tcttgatcga cggcaacgat gcgcctggcg agttgatgaa tgatgtccac gcgccggccg
     1741 c
//
LOCUS       DASZZE010000058         1616 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_181225, whole genome shotgun sequence.
ACCESSION   DASZZE010000058 DASZZE010000000
VERSION     DASZZE010000058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1616)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1616)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1616
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_181225"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            337..1503
                     /locus_tag="VHD88_01030"
     CDS             337..1503
                     /locus_tag="VHD88_01030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007292390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
                     /protein_id="HVS20394.1"
                     /translation="MNIGKLVFAQIMEHLPLTTFRRCVARYGGEHKVKTFSCIDQYLC
                     MAFAQLTYRESLRDIEACLRAQAGKLYHMGIRGSVARNTLANANAVRDWRVYADLAQS
                     LIGIARRLYIGEPFGVDLKETVYALDASTIDLCLSVFSWAPFRSTKAAIKLHTLLDLR
                     GNIPTFLHISDGKLHDVNVLDLLVPEPGAFYIMDRGYIDFERLHRLHDVGSFFVTCAK
                     SNLKAQRRYSHPVDRSTGLICDQTIALTGFYSRQDFDTPLRRIRFRDPETGKRLVFLT
                     NNFALPAITITELYRCRWQVELFFKWIKQHLRIKVFFGTSENAVKTQIWIAVSVYVLV
                     AVVKKRLNLSASLYEMLQILSLTMFERMPLNQLLTKMNADDNIEVSANQLNLFD"
BASE COUNT          360 a          488 c          416 g          352 t
ORIGIN      
        1 aaatgtacag cggctcgaag agctggtgat cgtcggggcg catccacgcc tcgcccatgc
       61 tgttccgcat gcgaacattc tccagcgcat aggcaacgcg aaccgcaatc gagcccgcgc
      121 gctcgattgc ggtcacaatc caaggagcca tttcacgagg aaggtcggga tcaaatcgag
      181 tattgaaaag ccatcagtag tgtcccaacg ttgagcgatt gatcgccagc aactgattga
      241 cacgaaaatg ataaatcatg ctttattctg gtctcgattt gaactccgcc gctaacgttt
      301 gccatcctgc gaggaactca ctcgcagggg gcatcgatga acataggcaa gctggtgttc
      361 gcgcagatca tggaacatct gccgctgacg acgtttcgtc gttgcgtagc gcgttacggg
      421 ggcgagcaca aagtcaaaac gttttcttgc atcgatcagt acctctgcat ggcgttcgcg
      481 cagctcacct atcgcgagag cctgcgcgat atcgaagcgt gcttgcgagc gcaagcgggc
      541 aagctctatc acatgggcat ccgcggcagc gtagcccgca ataccttggc caatgcgaac
      601 gcggtgcgcg actggcgcgt ctacgccgac ttggcccagt ctctcatcgg aattgctcgc
      661 cgtctttata ttggggaacc cttcggcgtc gatctgaagg agacggtcta cgcgctcgat
      721 gccagcacca tcgacctgtg cctgtcggtg ttttcctggg caccgtttcg ctcgacgaaa
      781 gcagccatca agttgcacac gctgttggat ctgcgcggca atatccccac gtttctgcac
      841 atcagcgacg gcaaactgca cgacgtcaat gtcctcgacc tgttggtacc cgagcccggc
      901 gccttctaca tcatggaccg cggctatatc gacttcgaac ggctgcatcg ccttcacgac
      961 gtgggcagct tctttgtgac gtgcgccaaa tccaatctca aagcacagcg tcgttattcg
     1021 catccggtcg accggagcac agggttgatt tgcgaccaga ccatcgcgct caccggattc
     1081 tattcgcgcc aagacttcga cacgccgctg cgccgcatcc gatttcgcga ccccgagacc
     1141 ggcaagcggc tggtgttcct gaccaacaac ttcgcgctgc cggcgatcac catcaccgag
     1201 ctctaccgat gccgctggca ggtggagttg tttttcaaat ggatcaagca gcatcttcgt
     1261 atcaaagtct tcttcggcac ctccgagaac gcagtcaaga ctcaaatctg gatcgcggtc
     1321 tccgtctacg tgctcgtcgc cgtcgtcaaa aagcggctca acctctcggc aagcctctat
     1381 gaaatgctac agatcttgag tctgaccatg ttcgaacgca tgccattgaa tcagctactt
     1441 accaaaatga acgccgacga caacattgag gtttcagcca accaactgaa tctctttgat
     1501 taacgttggg acactagtga tgcggcctgt ttctttacct ccaacgccaa aaacgggagg
     1561 cgtggcaact atgcccagcc gaatgaagaa ctcggcatcc gcaacttcgc catctc
//
LOCUS       DASZZE010000059         5749 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_147700, whole genome shotgun sequence.
ACCESSION   DASZZE010000059 DASZZE010000000
VERSION     DASZZE010000059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5749)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5749)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5749
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147700"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(206..2095)
                     /gene="pilQ"
                     /locus_tag="VHD88_01035"
     CDS             complement(206..2095)
                     /gene="pilQ"
                     /locus_tag="VHD88_01035"
                     /inference="COORDINATES: protein motif:HMM:TIGR02515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009297 - pilus assembly [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus secretin PilQ"
                     /protein_id="HVS20395.1"
                     /translation="MPKHPLKFAVVKTCALACVAGLSLNSFAIASGSAARTATEMRRT
                     PVRDIALEQSPMPSPTPAKPGISPAKDNMAMQADQGRRYGQSGFVGEPINLNVVNADV
                     RDILNYITEQYGINFVIDSSVGAVPVTVNVQDVAWNLALEMILRSNKLGAQVNGNILR
                     IATVDSLARDAETEKVINEARLENTALVTEFIRLNYARASGVLAGAGGASGNFAGGVT
                     TNVPNPSSSSAAGSASAASAGTDQGILPIVQRRLSRRGSVEVDGRSNTLIITDVKENI
                     DAIRQLVVLLDQPEPQVEIETRIVIANRSFSRDLGVQLNALAVNRTTGGTAGFGTAPG
                     SPLAGATGGSGNTIGLRPAGIPQGILNPSGALGANLPNTVIGLTTGMIGTAQISALIT
                     AAESRGTVKIIATPRVTALNNRKAEISSGQQIPVTTPQTGAGGAGGVLVFTTTFVSVP
                     LRLEVTPQITDAGTVVLHVIAENNSVNTAIAINGTPGIDTQRMETEVLVPNGGTTVVG
                     GVLGENDTETQNRTPGVSNLPLLGNLFKRKGVTRQSNEILFFITPRIYRPDYSGQPTQ
                     AVVGTGNRTVTIPQPVPLGNPQSNTPTPSQMQQERNPQSPQGMTNPSSTVRPPATGGT
                     RPPQQ"
     gene            complement(2315..2938)
                     /locus_tag="VHD88_01040"
     CDS             complement(2315..2938)
                     /locus_tag="VHD88_01040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20396.1"
                     /translation="MDYKKITATLVFAICVAGLTATASAQDKPAVEKPVAEKPATVEK
                     GSARDPFKKYAVERKVTKATASKLEPPSIEVRIERYRAQKLAAAAAHVAPPKPTTALL
                     LNEMQVVGIFRTPRGWAAMVEATPIKLSYVIYPGETFFDGQLVAIEESRLVFRRDTIW
                     NDGRHEKSAEIKPLRQPRPVEAMTAAKAAPAKAPAPETVKPTAPEKQ"
     gene            complement(2979..3680)
                     /gene="pilO"
                     /locus_tag="VHD88_01045"
     CDS             complement(2979..3680)
                     /gene="pilO"
                     /locus_tag="VHD88_01045"
                     /inference="COORDINATES: protein motif:HMM:NF016253.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA];
                     GO_process: GO:0043683 - type IV pilus assembly [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type 4a pilus biogenesis protein PilO"
                     /protein_id="HVS20397.1"
                     /translation="MPARNRAAKSQEKIMKIGNINGIPWYLRLGIFAVMALSVYAGFW
                     YFITSGTRKDTKNLQEQVAVLQKANAEAQIASQRLNEFRTAYKNKQEELEELRALLPE
                     QRELTKVLGGIQDRARATGLSVRKFAPKDDVQQDFYSGKRIDVAVQSTFAGLRAFFDQ
                     MAHYQRIVSITNFEIKQMDKQANGKTIEARFDLTAYYVSSEKLQKQNTAQPNGAPGTQ
                     AQVTQAVNQAVAPAK"
     gene            complement(3684..4376)
                     /locus_tag="VHD88_01050"
     CDS             complement(3684..4376)
                     /locus_tag="VHD88_01050"
                     /inference="COORDINATES: protein motif:HMM:NF016992.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilN domain-containing protein"
                     /protein_id="HVS20398.1"
                     /translation="MIKINLLESVTDRPAGVAFVEDRVSSTRTQTSLLALTVMALMVL
                     GMGYDYVSANAQHEAATKELDKQKRINEQMMAVKREQSDLEKKIADINFRIDAIQKLR
                     ASQQGPGAVLSEIKARFDSVPGLYLKSVEQKDAELVIKGESPNEAAVTRFGQSMEFSS
                     GLFTNLNIETQREIAATKGVNGASVAASQQDPNAPRPEVVAFTIKCSYARNAGQQNSN
                     PSPVPANHVAKN"
     gene            complement(4373..5434)
                     /gene="pilM"
                     /locus_tag="VHD88_01055"
     CDS             complement(4373..5434)
                     /gene="pilM"
                     /locus_tag="VHD88_01055"
                     /inference="COORDINATES: protein motif:HMM:TIGR01175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009297 - pilus assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus assembly protein PilM"
                     /protein_id="HVS20399.1"
                     /translation="MMWKQGKKSMVGVDIGSSSIKAVELQGKNGDFQLLNLGYEGLQP
                     DSIVDGQIMELNSVSNAIANIFNEHKIKTTKVAAGVNGHSVIVKNIVLPQMTDEELQE
                     SFAWHAEEHIPFDISDVNLDYHVTSSSEDAIHVLLAACKRDKIANLKQAIQLAGKQPA
                     VVDVDAFALQNCYELNYDPQAGQVVALLNIGASTTNINILNGVRSVFTRDATFGGNQY
                     TSLLQKELGLTFDQAERVKRGMPLPEGAEHREIEPILDTVSDILALEIQKTMDFYRAT
                     VEDGGSAVQKILISGGGSKLKGLVEFLAKRFEIPVEMFDPFRRIRVDARGFDPDYMRE
                     IVPEMAIAVGLALRGVDAR"
BASE COUNT         1084 a         1660 c         1627 g         1378 t
ORIGIN      
        1 agggcgccga ggctgccgtc ggttttctcg acgatcgatt ggagggtttc cttgaacatg
       61 atcactaagt ccgcctgtcg ctgagacagt actggtgagc cctccctaac ggtcgggcta
      121 atgccccgcg tcgatcaccc acccgctcac gcaggtggta ctgacttacc tactcaatgc
      181 aggcaggatg cctgcgctcc ccgcactact gctgtggcgg tcgggtgcca ccggttgccg
      241 gaggtcgcac cgtgctcgac gggttcgtca tgccttgcgg cgattgtgga ttccgctcct
      301 gctgcatctg cgaaggcgtc ggcgtgttgc tctgcggatt gcccaaaggc accggctgcg
      361 gaatcgtgac tgtgcggttt ccggttccca cgactgcctg ggtcggctga cccgagtagt
      421 ctggccgata gatgcgcggc gtgatgaaga aaagaatttc gttcgactgc cgcgttacgc
      481 ctttgcgttt gaagagattg cccagcagcg gaagattgga aacgcccggc gtgcgattct
      541 gtgtttcggt atcgttctct ccgagcacgc caccgacgac cgtggtgccg ccgttgggaa
      601 ccagcacttc agtttccatt ctttgcgtgt caatgcctgg agtgccgttg atcgcgatgg
      661 ctgtgttcac actgttgttc tcggcgatga cgtgcagcac gaccgtgccc gcatccgtga
      721 tctgcggcgt tacttcaaga cgcaacggta cggagacaaa cgtggtagtg aagaccagca
      781 cacctccagc tccgcccgcg ccagtttgcg gcgtggtgac tggaatttgc tggccgctcg
      841 aaatctcggc cttacgattg ttcaaggcgg tgacgcgcgg agtggcgatg atctttaccg
      901 tgcctcggct ctcggcggcg gtgatcaacg cgctgatttg cgctgtgcca atcatgccgg
      961 tggtcaagcc gataactgta ttcggaagat tcgctcccag tgctcccgat ggattgagga
     1021 tgccttgcgg aattccggcc ggtctgaggc cgatcgtgtt tccggaccca ccagtcgcgc
     1081 cggccagcgg cgagcctgga gccgttccga atccggctgt gccgcctgtc gttctgttaa
     1141 ctgccagagc gttaagctgc acacccagat cacgactaaa gcttcggttg gcgatgacga
     1201 tgcgcgtttc gatctcgacc tgaggttcgg gttgatccag taacaccaca agttgacgaa
     1261 tcgcgtcaat attttctttc acatccgtta tgatcagcgt gttgctgcgt ccatctactt
     1321 cgacgctacc gcgtcttgag agacgccgtt gaacgatggg cagaattccc tggtcggttc
     1381 cggctgaagc tgccgaagcg gacccggccg cggaactgga tgaggggtta ggcacattcg
     1441 tggttacgcc gcccgcaaag tttccagacg ctccgccagc tcccgcgagc acgcccgaag
     1501 cgcgcgcgta gttcagccga ataaactcgg ttaccagcgc agtgttctcg agcctcgctt
     1561 cgtttattac cttttccgtt tcggcgtctc tcgccagcga atcaaccgtg gcgatgcgca
     1621 ggatgttgcc attgacctgc gcgcctaact tgttggatcg cagaatcatc tcgagcgcga
     1681 ggttccacgc cacgtcctgc acgttgaccg taactggcac cgcgcccacg gaactgtcaa
     1741 ttacaaagtt gatgccgtac tgctcggtga tgtaattcaa gatgtcgcgg acgtcggcgt
     1801 tgaccacatt caggttaatc ggctcgccga caaatccgga ttgtccgtag cggcgaccct
     1861 gatcagcctg catcgccatg ttgtccttgg cgggcgatat gcctggcttt gccggcgtcg
     1921 gtgatggcat aggactctgt tcgagcgcga tgtctctgac aggagtccgg cgcatttcag
     1981 tcgctgtacg agcggcggag ccactcgcga tggcgaacga attgagcgac aggccggcga
     2041 cgcatgcgag cgcgcatgtt ttgacgacgg caaactttag gggatgctta ggcattattc
     2101 cctcctcagg gattgctgaa cttccgccac gcgctcgctc gaaatgcctg aagaacgaac
     2161 attcaaagcg cgcgccgcac taagcggcaa ttcagatttg attgtcaata aagtgaacaa
     2221 agccactgct acactgcgca ttggtcgatt cgttcacgca tcaggccact gagatgcgaa
     2281 gcagtccgca tcgcttaagg ccaggaaaca ttcgctattg cttttccggc gcggttggct
     2341 tcacagtttc gggagccgga gctttggcag gggccgcttt ggcagcggtc atcgcttcga
     2401 cgggacgcgg ctggcgcagt ggtttgatct ccgcagactt ctcatgccgg ccgtcattcc
     2461 agattgtatc tcggcgaaac acgaggcggc tctcttcaat cgctacgagc tggccgtcaa
     2521 aaaaagtttc gccgggatag ataacgtaag agagtttgat cggcgtcgct tcgaccatcg
     2581 ccgcccaacc ccggggcgtg cggaagatgc cgaccacttg catctcgttc agcaacaaag
     2641 ccgtcgtcgg ttttggcggc gccacgtgcg cggcggcggc ggccagcttt tgcgcgcgat
     2701 aacgttcgat gcgaacttcg attgatggcg gctcaagctt cgacgcggtt gccttcgtca
     2761 ctttgcgttc gaccgcgtac ttcttgaaag gatcgcgggc agagcccttc tcgactgtcg
     2821 ccggcttttc ggcgactggc ttttcgaccg caggcttatc ctgcgccgac gcggttgcgg
     2881 tgaggcccgc aacgcagatt gcgaagacta acgttgctgt gatctttttg taatccatct
     2941 ttgttttccc tgaatcaaag ccggcaagtt cggcgaagtt acttcgcagg cgcaaccgcc
     3001 tggttgacgg cttgcgtgac ctgagcttgc gttccggggg cgccattcgg ctgcgcagtg
     3061 ttttgcttct ggagcttttc actggagacg tagtacgcgg ttagatcgaa acgggcttcg
     3121 atggtcttgc cgtttgcctg cttgtccatc tgcttgattt caaagttcgt gatcgaaacg
     3181 atgcgctggt agtgggccat ctgatcgaag aacgcgcgca gaccagcgaa cgtgctctga
     3241 accgcgacat cgattcgctt gccgctgtag aagtcctgtt gcacgtcatc cttcggcgca
     3301 aattttcgca ccgagagacc ggtggcccgc gctcgatcct gaatgcctcc caaaaccttc
     3361 gtcagttcac gctgctcagg cagcaaggcg cgcaactctt cgagttcttc ctgcttgttc
     3421 ttgtaagcag tccggaattc gttgagacgc tgcgaggcaa tctgcgcttc ggcgttcgcc
     3481 ttttgcagca ccgcaacctg ctcttgcaag ttcttcgtat ctttgcgtgt gccgctggta
     3541 atgaagtacc agaagcccgc atagacgctg agggccatca ccgcgaagat gcccagcctg
     3601 agataccagg gaatgccgtt tatgtttcca atcttcatga tcttttcctg tgacttggca
     3661 gcgcgatttc tcgcgggcaa cgtctagttt ttggcaacgt gattcgccgg caccggcgac
     3721 ggatttgaat tctgctgtcc agcgttacgg gcgtagctgc acttgatcgt gaaagcgaca
     3781 acctctggcc gcggcgcgtt tggatcttgc tggctcgcgg caaccgaggc tccatttacg
     3841 cctttggtgg ctgcgatttc tctctgcgtc tcgatgttca ggttcgtaaa gagacctgac
     3901 gaaaactcca tgctttgacc aaagcgcgtc accgctgctt cgttgggcga ctcgcccttg
     3961 atcaccaact cagcatcttt ctgctcgacg ctcttcaggt agaggccggg aacgctgtca
     4021 aagcgagctt tgatctcact caacacggcg cctgggcctt gctgcgatgc gcgcagtttt
     4081 tgaatcgcgt cgatgcgaaa gttaatgtcc gcgatcttct tttcgagatc cgattgctcg
     4141 cgcttaacgg ccatcatctg ttcgttgatg cgcttttgct tgtccagctc tttcgtcgcg
     4201 gcctcgtgct gagcgtttgc gctgacatag tcgtacccca tgccgagcac catcagcgcc
     4261 atcaccgtca acgctaacag ggacgtttgc gtccgcgtgc tggagactct gtcttcaacg
     4321 aacgctacgc cggcaggacg atcggttacc gattctaaaa ggtttatctt gatcaccggg
     4381 cgtcaactcc tctcagcgcc agtccgacgg caatggccat ctctggcacg atctcgcgca
     4441 tgtagtctgg atcgaaacca cgagcgtcaa cccgaatcct ccgaaacgga tcgaacatct
     4501 cgacgggaat ctcaaaacgc tttgccagga attcaaccag accttttagt ttcgagccgc
     4561 cgccagaaat caaaatcttc tggactgccg acccgccgtc ttcgactgtg gcgcgataga
     4621 aatccatcgt cttctgaatc tccagcgcga ggatatcgga aactgtgtcg agaatcggtt
     4681 caatctcgcg gtgctcggcg ccttccggca gcggcattcc gcgctttact cgttcagctt
     4741 gatcgaacgt caatccgagt tctttctgca gcaacgacgt gtactggtta ccaccgaacg
     4801 tcgcgtcacg ggtgaagacc gatcgaacac cattcagaat gtttatgttc gtcgttgaag
     4861 cgccaatgtt cagcaacgcc acaacctggc ctgcttgcgg gtcgtagttc aactcgtaac
     4921 aattctggag ggcgaacgca tcgacatcga ccaccgcagg ctgtttcccg gcaagctgaa
     4981 tcgcctgttt caaattcgct atcttgtcac gcttgcaagc ggcgagcagc acatgaatcg
     5041 catcttccga actgctcgtt acgtgatagt cgagattgac gtccgatatg tcgaacggga
     5101 tatgttcttc agcgtgccat gcgaacgact cctgaagttc ctcgtccgtc atctgtggca
     5161 gcacgatgtt tttgacgatc accgaatggc cattgacgcc ggcggcgact ttggttgtct
     5221 tgatcttgtg ttcgttgaaa atatttgcaa tcgcgtttga gacggaattc aactccatga
     5281 tctggccgtc cacgatcgaa tccggctgca ggccttcgta gcccaaattc agaagctgga
     5341 agtcgccatt cttgccttgc aactcgacgg ccttgatcga actcgagccg atgtcaacgc
     5401 cgaccatgct tttctttcct tgtttccaca tcatcaatga ctcctcgcag tcttcatcat
     5461 gagctggcgc tggcgacgga cgcgagcgcg ggcgcgccgg gcgcgggacg aacccgcacg
     5521 cactaatcgg attcggcggg ggtagcttgc gtttttcatt gggatgtctc gctgcaattg
     5581 tttcgggaag acttcgccag gttgcgaagg gcggggcgac ctttagtcgg cgggttccgt
     5641 gccgtttagc taacgcggct gagctgaaag aactgggccg tcactatcgg gaaaggtcag
     5701 ggttcgaccg ccggactcaa ggctacaaca ccgggtcaaa cattgtcaa
//
LOCUS       DASZZE010000060         1673 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_34781, whole genome shotgun sequence.
ACCESSION   DASZZE010000060 DASZZE010000000
VERSION     DASZZE010000060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1673)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1673)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1673
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34781"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(147..1100)
                     /locus_tag="VHD88_01060"
     CDS             complement(147..1100)
                     /locus_tag="VHD88_01060"
                     /inference="COORDINATES: protein motif:HMM:NF024748.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008800 - beta-lactamase activity
                     [Evidence IEA];
                     GO_process: GO:0030655 - beta-lactam antibiotic catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HVS20400.1"
                     /translation="MRNKAVLLLLLLTLSLSARPQQRFAASNSTSDTGLQALVNIAAR
                     TALTKFADKKLTEAQLSITLIDLRDAQHPATASFRGSERVYPASVVKLFYFVAVHRWL
                     EDKRIEPTDELKRAVRDMIVDSSNEATQYVVDVLTHTTGGYELPPKEMAEWQDKRNVV
                     NRYYLTLGYTNINTNQKTFCEDAYGREKVSRGPNGENRNKLTTDATARLLSEIVTGRA
                     VSPARSAQMMELLKRDFAGTSKDNDDQGHGFTGIALQGTGAKLWSKAGWTSTTRHDAA
                     YIELPSGAKFVLVTFTTDHANEREIIPTVARVVIDGIASVK"
     gene            complement(1090..>1673)
                     /locus_tag="VHD88_01065"
     CDS             complement(1090..>1673)
                     /locus_tag="VHD88_01065"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HVS20401.1"
                     /translation="LGAIALTLMAAAMMTSSFGALHASILATSRVPYAMARDGLFFKS
                     LSKISPRTRVPIRSLIALGVWSSVLALSGSYDTLTDSAIFALTLFYAFVAGSVFVFRR
                     RIPDASRPYRTWGYPFVPVVYLAVTAWLLGRIVWDGRDQMFASFQLFFHGQVLSAASA
                     ALKSPPLGSLFFILLGLPVYLILSKRSGGMNEE"
BASE COUNT          398 a          486 c          441 g          348 t
ORIGIN      
        1 aataagaaca accatcgccc acgtaatggc accgatggtc gcgcttgctt tcgcgaattt
       61 gggcccggct cttagcatcg cagcttttga aacatccgaa gaatctgctc atgattcagg
      121 atcgaacaac atcggacgga attttcctac ttcaccgacg cgatcccatc gatcaccacg
      181 cgcgcgacgg tcggaatgat ctcacgctcg tttgcatgat cggtcgtgaa agtaacgagc
      241 acgaactttg cgccgctggg cagttcgatg tacgcggcgt cgtgccgagt cgtgctggtc
      301 cacccggcct ttgaccaaag cttcgcgccc gttccctgca aagcgatgcc ggtaaagccg
      361 tgtccctgat cgtcgttgtc ttttgaggtg ccggcgaaat cgcgcttcaa cagttccatc
      421 atctgcgcgc tgcgcgccgg cgaaacggcg cggccagtga caatctcgct cagcaagcgc
      481 gcggtcgcat cggtcgtcag cttgtttcga ttctcgccgt tcggtccgcg cgaaaccttt
      541 tcacggccgt acgcgtcctc gcaaaaagtc ttctggtttg tattgatgtt tgtatatccg
      601 agcgttagat aataacgatt cacgacgttg cgcttgtcct gccactccgc catttctttc
      661 ggcggcaatt cgtaaccgcc ggtcgtgtgc gtcaagacat cgacgacgta ctgtgtcgct
      721 tcgttcgatg aatcaacgat catgtcgcgc accgcacgct tgagttcgtc tgtcggttcg
      781 atacgcttgt cctcaagcca acggtgcacc gcgacaaaat agaaaagctt aaccacgctg
      841 gccggataca cgcgttcgct gccgcgaaaa ctcgccgtcg ctggatgctg cgcgtcgcgc
      901 aaatcaatca gcgtgattga gagctgagct tcagtaagtt tcttatcggc aaactttgtc
      961 agcgcagtgc gcgcagcaat gttgacgagt gcttgcagac ccgtatcgct tgtcgaatta
     1021 cttgcggcaa acctctgttg cgggcgtgcg gaaagcgaaa gcgtcagcaa cagcagcaac
     1081 aggacagcct tattcctcat tcattccccc acttcgcttc gacaaaatca ggtataccgg
     1141 caaaccaagc aatatgaaaa ataagctccc aaggggtggt gacttcaaag ccgctgatgc
     1201 tgccgacaga acctgtccgt ggaaaaacag ttggaagctc gcgaacatct ggtcccgacc
     1261 atcccatacg attctgccca acaaccaagc cgtcacagct aaataaacga ccggcacgaa
     1321 cggatatccc caggtacgat aaggtcgtga cgcatcgggg atgcgacgac gaaacacaaa
     1381 gactgaccct gcgacgaacg catagaatag ggtgagcgcg aaaatcgctg agtcggtcag
     1441 cgtatcgtac gagcctgaca gcgccagcac gctagaccat acccccaaag caatcagcga
     1501 acgaatcggc acgcgcgtgc gtggtgaaat cttcgaaaga ctcttgaaaa acaagccatc
     1561 gcgagccatt gcataaggca cgcgcgaggt ggcgagtatc gatgcgtgca gcgcgccgaa
     1621 agaagaagtc atcatggctg ccgccatcaa cgtgagcgcg attgcgccga gca
//
LOCUS       DASZZE010000061         1866 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_34804, whole genome shotgun sequence.
ACCESSION   DASZZE010000061 DASZZE010000000
VERSION     DASZZE010000061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1866)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1866)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1866
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34804"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(258..>1866)
                     /locus_tag="VHD88_01070"
     CDS             complement(258..>1866)
                     /locus_tag="VHD88_01070"
                     /inference="COORDINATES: protein motif:HMM:NF014587.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="Ppx/GppA phosphatase family protein"
                     /protein_id="HVS20402.1"
                     /translation="ARHNESTGVRMKVAAIDVGSNSIKLVVVDAAASDSFAVLAREKE
                     TVRLGHDTLRKGHLSAAAVERAGDCIKRFASIAEARGAERIFAVATASVRVARNAARF
                     IKEIHRRTGVRLEVLSAIEEARLIGVAAAQGCAARNASLINIDIGGGSTEISLMHDSA
                     PTALFSVKLGAVGLTEKFISSDPIKQKDLRALKEEVRSAMERPGRELRDARWQQASGT
                     SGTIISIGEALRLRALTDEERKTKGAQPAGDEVVLSKLVRLNARMTELKVAERRAMPG
                     ISAQRSEIIVAGGQILEGAMRALGINALRTCGWALREGVLIDRLREIEAESKPPVADI
                     ADHRLRGVHAVGRRFGYEEAHAQQVAWLAESIFDQTVQHDSSGKLTRHHRILLSAAAL
                     LHDVGYHIAHENHHKHALYLIRNSELTGFSEAERDVIANVARYHRGPSPKERHFEFAA
                     LNEPDQKTVCALAAILRFADALDRSHDSRVKDVRCTRDGHIVHIQLHSAFNCDREIFA
                     AEQKRDMFEQIFKCKLSLSRRAALKRA"
BASE COUNT          361 a          558 c          541 g          406 t
ORIGIN      
        1 tctcttccgg ttagagaaac aaaaccgtaa acccggttgc gcccggcgcg gcttactggt
       61 tccatgtgaa gattacaaaa caaaaccgaa tcttctcgct ttcaacttga cattcacata
      121 gcagagggct ggggagaggg acttagacgc aggagtccgc gcagttaatg taatcgcgtg
      181 cctcggtttc tgtactcacg ccctctccct gaccctctcc caaagggaga ggggaaaaag
      241 aatctctaag agtccgatca ggcgcgtttc aaagccgcgc gccggctgag agacagctta
      301 catttgaaga tttgttcaaa catgtcgcgt ttctgctccg cggcgaagat ctcgcggtcg
      361 caattaaagg cactgtgcaa ctgaatgtgt actatgtgtc cgtcgcgcgt gcagcgtaca
      421 tccttaacgc ggctatcgtg gctgcgatcg agcgcgtcgg cgaaccgcaa aattgccgcc
      481 aacgcacaaa ccgttttctg atcgggctcg ttgagcgccg cgaattcgaa gtgccgttct
      541 tttggtgacg gcccgcggtg atagcgcgcg acattcgcaa tcacgtcgcg ctcagcttcc
      601 gaaaaccccg tcagctctga gttgcgaatc agatagagcg cgtgcttgtg atggttctca
      661 tgcgcgatgt gataaccgac gtcgtgcagc agcgccgccg ccgaaagcaa gatgcgatga
      721 tgcctcgtga gtttacccga agagtcatgc tgcaccgttt gatcgaagat gctttcagcc
      781 agccacgcca cttgctgcgc atgcgcttct tcatagccaa agcgacgacc gacggcatga
      841 actccgcgca agcgatgatc ggcaatgtcc gctacgggcg gttttgattc ggcttcgatc
      901 tcgcgcaaac gatcgatgag cacgccttcg cgcaaggccc agccgcaggt gcgcagcgcg
      961 ttgataccca gcgcacgcat cgcgccttcg agaatctgtc cgccggcaac gatgatctcg
     1021 gagcgctgcg cgctgatgcc gggcatcgct cgccgttcag caaccttcag ttcggtcatc
     1081 cgagcattga ggcgcaccag tttgctaagg acgacttcgt cacccgccgg ctgcgcgcct
     1141 ttcgtctttc gttcttcgtc agtcaatgcg cggagacgca gcgcctctcc gatcgaaatg
     1201 atcgtgcccg aggtgccgct cgcctgttgc cagcgcgcgt cgcgcagttc acggccgggc
     1261 cgttccatcg ccgaccttac ttcttctttc aatgcgcgca gatccttttg ctttatcgga
     1321 tcgctgctga tgaatttttc cgttagtcct accgcgccaa gtttgactga aaaaagcgct
     1381 gtcggcgcgc tgtcgtgcat gagcgagatt tcagttgacc caccgccgat gtcgatgttg
     1441 atgagcgagg cgttgcgcgc agcgcaacct tgcgcagccg caactccgat cagacgggct
     1501 tcctcgatcg ccgaaagcac ttcaagtcgt acgccggtcc ggcggtgaat ttctttgatg
     1561 aaccgggcgg cgttgcgggc tacgcggacc gaagcggtgg ccacggcaaa gatgcgttcg
     1621 gcgccgcgcg cctcggcgat cgatgcgaac cgtttaatgc aatcgccggc gcgttcgacg
     1681 gccgccgcgg agaggtgtcc tttgcgcaga gtgtcgtggc cgaggcggac cgtttctttt
     1741 tcgcgcgcca acacagcgaa cgaatcgctt gcggcggcgt caaccacgac cagcttgatc
     1801 gagtttgaac cgacgtcgat cgcggcgact ttcatgcgga ctcctgttga ttcgttgtgg
     1861 cgggcg
//
LOCUS       DASZZE010000062         4549 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_1910, whole genome shotgun sequence.
ACCESSION   DASZZE010000062 DASZZE010000000
VERSION     DASZZE010000062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4549)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4549
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1910"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            106..1521
                     /gene="pruA"
                     /locus_tag="VHD88_01075"
                     /pseudo
     CDS             106..1521
                     /gene="pruA"
                     /locus_tag="VHD88_01075"
                     /inference="COORDINATES: protein motif:HMM:NF002852.0"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003842 - 1-pyrroline-5-carboxylate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006562 - proline catabolic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="L-glutamate gamma-semialdehyde dehydrogenase"
     gene            1713..2648
                     /gene="fmt"
                     /locus_tag="VHD88_01080"
     CDS             1713..2648
                     /gene="fmt"
                     /locus_tag="VHD88_01080"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR00460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004479 - methionyl-tRNA formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HVS20403.1"
                     /translation="MRLIFMGTPESAVPSLRRMLDDGHEIVAVWTRPDKPAGRGQQLH
                     TSPVKEFALEHRLPIDQPARIKTEEAKALFASHEADAAIVVAYGRILPPEFLSAPRNG
                     CINVHFSLLPKYRGAAPVNWAIVNGETETGVTTMKIVEELDAGQILLQRSTRIKEHES
                     GTELLKRLAAMGAELLSETLKRLDSIEPQPQRDEAATLAPILKREDGLIDWSMDAAAI
                     ERRVRGFQPWPNAYTTLGSRRLIIWQATPENTKQVNGSPGQIMEAHGDNLSVLCGDDT
                     TLRLLELQSENGRRMSARDFLNGTHVKVGGMLGRG"
     gene            2725..3363
                     /locus_tag="VHD88_01085"
     CDS             2725..3363
                     /locus_tag="VHD88_01085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20404.1"
                     /translation="MKYQLTPDLIQRAFRQTAWDFGNNILYELCAKYPDHLQDDVIIA
                     KVWLIGRSYAAAIERRLVNPLGAIGDAFYENVVAPRIRTSRIKEWFDSLTADSDNSLL
                     LSLEVHKKVTELFSEISGMEKRSLASKYLHFHFPQRFYIFDSRAQQAITKLTRSVGKT
                     MPSKGAHDNQYALFCFRCEALNDDVHKLIGRRLTPRELDKVLLTHRGTQQIV"
     gene            3508..3732
                     /locus_tag="VHD88_01090"
     CDS             3508..3732
                     /locus_tag="VHD88_01090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20405.1"
                     /translation="MTFIVSKADDGRIWVGSTDEEGDGLATSVVKGTDKVWRQGSPSP
                     DDLKDNFQRVKDTVEAAKLIEEAKKAASSL"
     gene            complement(4180..>4549)
                     /locus_tag="VHD88_01095"
     CDS             complement(4180..>4549)
                     /locus_tag="VHD88_01095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20406.1"
                     /translation="EVFPHVAVFRVQGAAKGKDLILLGSRAPLSFDQFDERFNEPRIA
                     VELARAGIKNANDLRGWFICDESRLAPAVAGAIINTDDSMHVETVAPREAFRPTMDKN
                     AAWIERLRRESSLSIQPASK"
BASE COUNT         1099 a         1211 c         1252 g          987 t
ORIGIN      
        1 cgcggcgctc gagaaggtga acagccagct cggccaggaa taccctgtcg taattggcgg
       61 cgaacgcatc aagactgaaa gcaagtttga cagcataatc ccgcgaaccg cacgcaaata
      121 gtcggacgct tcaataaagc gacaaaggac ctagccaatc gtgccgtcga agctgccagt
      181 aagacttttg aaacctggag gaacgtgtcg ccagaggaac gcgcgcagtt gctctttcgc
      241 gtcgctgaac tcatgcgcac gcgcaaacat gaactgtcgg cgtggatgat tcatgaagtc
      301 gcgaagacct ggccggaagc agacggtgac acggccgagg cgattgactt cctggagttc
      361 tacgcgcgag acatgctgcg ttacggagcg ccgcagccgc tgacacagct cgcgggcgaa
      421 gagaatcgtc ttgaatatat tccgctagga gtcggggcag tgattccgcc atggaacttt
      481 cctttggcaa tcatggccgg aatgaccgcc gcggcaattg ttaccggcaa caccgtcgtt
      541 ttgaaaccat cctcagatgc gccgacgatc gcgtacaagt ttttcgagtt gctggaagaa
      601 gccggcatgc ccgccgccgt ggtgaacttc atgaccggct caggcgcgga agtcggcgac
      661 gtgattgtcg atcacccgaa gacgcggttt gtcgcgttca ccggatcgaa agaagttggc
      721 gtgcgcatca acgaacgcgc ggcgaaagtt cacgacggtc aaatctggat caagcgagtc
      781 gtggccgaaa tgggcggcaa agacgcgatc attgttgctg acgatgcgaa tttggacgaa
      841 gctgccactg ccgtggtgca agcggcgttt ggttatcaag gacagaagtg ttccgcctgc
      901 tcgcgcgcaa tcatcgacgc tcgcgtctac gatccaatga tcgaaaagat cgccgagcgc
      961 actgcgaaga tcaaagttgg cgatccttct gacaacgcaa cgactatgag cgccgtcatc
     1021 aacgagaagg cgttcaagtc aatcaatagt tacgtcgaga aaggcaaagc cgaaggccgc
     1081 gtgattgccg gcggtggttc tgacggcgag cagggattct tcatcgagcc aacagtgatt
     1141 gccgacgtga agcccggcgc gacgatcgag caggaagaaa tcttcggacc cgtgctggcc
     1201 gtgatcaaag cgaacgatta tgacgatgcg ctgcgaatcg ccaacgacac gcagtttggt
     1261 ttgaccggcg cggtttactc gactgatgaa gccaagatcg agcgcgcgcg aaaagagttt
     1321 cacgtcggca atctctactt caatcgcaag tgcacgggcg cgtttgtcgg cgtgcatccg
     1381 tttggcggct tcaacatgtc gggaaccgat tcgaaagccg gcggccacga ttaccttttg
     1441 ctgttcatgc aagcgaaact ttcgtcggcg aatattggcg cgacgaccgg caagaaagcc
     1501 gaagccggca ccgctgcgtg aagaaattcc agacgagcgg gggcaagccc gccttcccga
     1561 ccttgaggta cttccccttg aatctcattc cttaaccttg aaaggccttc aaggttttcg
     1621 gcgtaagcaa gagacttaat aacctctcag gtcaggaagg cgggcttgcc cccgctcttc
     1681 ctctttacct tggctgtaaa gtaattctag gaatgcgact tatcttcatg ggcacacctg
     1741 aatccgcggt accgtcgttg cggcgcatgc tcgacgatgg tcacgagatc gtcgcggtat
     1801 ggacgcggcc agacaaacct gcgggtcgcg ggcagcagtt gcatacctcg ccggtcaaag
     1861 aatttgctct ggaacatcgc cttccaattg atcagcccgc ccggatcaag actgaagaag
     1921 ccaaagctct gttcgcatcg catgaagcgg acgcggcgat agtcgtggcg tatggaagaa
     1981 ttctcccgcc agagtttctg agtgcgccgc gaaacggatg tatcaatgtt cacttctcgc
     2041 tgttgccaaa ataccgcggc gcggcgccgg ttaactgggc catcgtcaac ggagaaacag
     2101 aaactggtgt cacgacgatg aagatcgtcg aggagctgga tgccgggcag atccttttgc
     2161 aacgctcgac taggatcaaa gagcacgaaa gcggcacgga attgttgaaa cgtctggcgg
     2221 cgatgggcgc agagttgttg agcgagacgc tcaaacgtct cgacagcatc gagccgcaac
     2281 cgcaacgcga cgaagcagca acgctcgcgc caattctgaa gcgcgaagac ggtttgattg
     2341 actggtcgat ggatgcggcg gcaatcgagc gacgcgtgcg cggctttcag ccgtggccca
     2401 atgcttacac cactcttggt tcgcgccgat tgatcatctg gcaggccacc cctgagaaca
     2461 ctaagcaagt taacggcagc cccggccaga taatggaagc tcatggcgac aacctcagcg
     2521 ttttgtgcgg cgacgacacg acgctgcgcc ttttggaact ccagagcgaa aacggtcgcc
     2581 ggatgagtgc gcgcgatttt ctcaacggca cgcacgtcaa agttggcggg atgctcgggc
     2641 ggggctagct tcgcgaggta taatgcgcgg catcgcgtac ttaggccacg cgccgtggtc
     2701 taaggtagtt gggttccaca gcgtatgaaa tatcagctga ccccagattt aatacaaagg
     2761 gcctttaggc agacggcttg ggactttggc aacaatatcc tctacgaatt gtgtgccaag
     2821 taccccgatc atctacagga cgatgtgatc attgcaaagg tgtggttgat tggtcgctct
     2881 tacgctgccg ccattgagcg cagactcgta aatccgctcg gggccatcgg agatgcgttc
     2941 tatgagaatg tcgtggctcc gagaattcgt acgtctcgaa tcaaggaatg gtttgattca
     3001 ctcacggctg actcagacaa cagtttgctt ctatctctcg aggtgcataa gaaagtaacg
     3061 gagcttttct ctgagatttc agggatggaa aagcgctcac ttgcatcaaa atatttgcac
     3121 tttcactttc cacaacgttt ctacattttc gactctcgcg ctcaacaagc tattaccaag
     3181 ctgacccgta gcgtcggaaa aaccatgccg tcaaagggcg cacatgataa tcaatacgct
     3241 ctcttctgct ttcgttgtga ggcacttaat gacgacgtac acaaactcat tggtcggcgt
     3301 ctgacgccac gcgagttgga caaggtcttg ttgacgcata gaggaaccca acaaatcgtt
     3361 tgaccggagc gcggatggcg cgttctttaa cctgttaatt ggctctcacg ttgttgataa
     3421 tcgcggcccg ccgaacaaat cggaccggac cgcggatagc gcactcttca acttgtgctt
     3481 tatactttat aatagtacgc gactcccatg accttcattg tttcaaaagc tgacgatggc
     3541 cgaatttggg tcggttctac tgatgaagaa ggggacggac tggctacctc cgtagtcaaa
     3601 ggtacggata aagtttggcg ccaaggatct ccttctcctg atgatttgaa agataatttc
     3661 cagcgcgtca aggatactgt cgaagctgct aagctcatcg aagaagccaa aaaggccgcc
     3721 tcttcgctct aagagaaaag cctctcactt tcgcaagaaa tagctaaaag gcaaaccgat
     3781 atataatctc tttcgtcatg acagtggatc aggcacaagt atcccacagc gccgaccaac
     3841 atttttccga aacattaaga ggcaagcgtc gcatcttttc ctaaacggcg agcatctcga
     3901 agaggcgagg tgctagtcca cgcagcggac gaacgaaaat agcccaccga tgcagagctt
     3961 gtgtcaaaac ccgattgagt gttgacgaat cgcctgatta aacgcaaaga gcgcaaagtc
     4021 ttatcgcaaa ggtcgcagag gaaagctgtc tttgcgttac tttgcgaatt cgcatggcgt
     4081 cctttgcggt taaattggtg tttcatcact acgagcttga gttttgacat aggctcttca
     4141 tcggtgggat cgacgtccat attctgatag tacgcggacc tatttgctag cgggctgtat
     4201 agataatgac gattctcttc tcaatctttc aatccacgcc gcattcttgt ccatcgtcgg
     4261 ccgaaacgct tcgcgcggcg ccacggtttc cacgtgcatg ctgtcgtcag tgttgatgat
     4321 tgcgccggca acagcgggtg ctaatcgcga ttcatcgcaa ataaaccatc cgcgcagatc
     4381 gttcgcgttc ttgattccag cgcgcgccag ctccacggcg atcctcggtt cgttgaatcg
     4441 ctcatcaaac tgatcgaagc tgagcggtgc gcgacttccc agcaggatca aatccttacc
     4501 cttcgccgcg ccttgcacgc gaaacacagc aacgtgtgga aagacctca
//
LOCUS       DASZZE010000063        11257 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_98990, whole genome shotgun sequence.
ACCESSION   DASZZE010000063 DASZZE010000000
VERSION     DASZZE010000063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 11257)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11257)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11257
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98990"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..267
                     /locus_tag="VHD88_01100"
     CDS             <1..267
                     /locus_tag="VHD88_01100"
                     /inference="COORDINATES: protein motif:HMM:NF016167.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF433 domain-containing protein"
                     /protein_id="HVS20407.1"
                     /translation="STKEIDIMTLVIEEEAVESLPISIDPEIMSGTPVFEGTRVPVEA
                     LLNNLAAGVSLNEFLENFPTVNREQAVAVLNFSNQTLKNLGLSG"
     gene            597..1289
                     /locus_tag="VHD88_01105"
     CDS             597..1289
                     /locus_tag="VHD88_01105"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HVS20408.1"
                     /translation="MIIEQITVTAFQQHTRIVGCEKTKLAICIDPGDGSDEIVSAIDK
                     HGFELQAIACTHAHMDHIGGVAALKKLKPEAKIIIHPADEFIYDELPNQPSWIGIPRS
                     QWAEYGFNYEQPPKADEHWSDGQIYEVGELSFTIIHCPGHTPGHVVLFEPNERKVFVG
                     DCLFAGSIGRTDLPGGSTEQLMDSLFRKILPLGDDVEVYSGHGPTTTIGDERRTNPFL
                     TGVYQIGKGGRM"
     gene            complement(1353..1829)
                     /locus_tag="VHD88_01110"
     CDS             complement(1353..1829)
                     /locus_tag="VHD88_01110"
                     /inference="COORDINATES: protein motif:HMM:NF013331.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group 1 truncated hemoglobin"
                     /protein_id="HVS20409.1"
                     /translation="MKITKRAALAFCLLVVLGASATAYKSMNLSAGGGQETKKSLYDR
                     LGGYNAIAAVVDDFIGRLVADKRFTKFFVGHSEDSLKKIRQHIVDQFCAAAGGPCLYT
                     GRDMKTSHHGLGITSDDWDASAKHLVETLDKFNVPKAEKDELLAFVGTLKKDIVDK"
     gene            complement(1871..3622)
                     /locus_tag="VHD88_01115"
     CDS             complement(1871..3622)
                     /locus_tag="VHD88_01115"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HVS20410.1"
                     /translation="MAVSISGPKASAQGYEREFPTPGKVLLTIKNRNGRVSVITSDSQ
                     KDKMIVQASSPGAPVEPGDVNVSSGEITVRDRRAQDRIDLTVHVPPRSRVKIESETGM
                     VDVIGDLEVADVITNTGTIHADVPLDSLKFKFLWQSSHPRFLSDVELPSIKEGRAGTF
                     SIAGTLGPNVRKSKHKKVEKESDSAVAENTGSQNDATAKPADSADQKPKKQEPVQLNL
                     TTQRGVILLNVDPSMAPNDLRERPLTEAARAIVRSGDGPLTDAIRKVSPHMFGDYAKT
                     LPPPRSEPALVSQRPPGEIATAVAPQLMRVNASVMDRNGRAIAGLRISDFAIYEDGNE
                     RTVVNVAPATEPFNLVLLLDVSGSVEERIDFIRKAARDFLNATSPQDRISIISFREDI
                     QVISGFSTDRTLLSKKLDEIDAGGATALYDALAYTLVNTLKPLRGERTAIVILSDGDD
                     NKSFIPFPSILEATIESGALIYPLYVPSGLVPESSVPRPSITVDPMRTRYLTITTRAA
                     EEGQKMAEASGGVFYSIKRLEDLQKAYDDVVAQLRTAYTITYSTNVEGTSHRRIRVRA
                     NRDGASVRLSPVVATTH"
     gene            3790..4098
                     /locus_tag="VHD88_01120"
     CDS             3790..4098
                     /locus_tag="VHD88_01120"
                     /inference="COORDINATES: protein motif:HMM:NF017897.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF962 domain-containing protein"
                     /protein_id="HVS20411.1"
                     /translation="MNQRQFNSLADFWPHYLGEHSKPATRLQHGVGTIIALALVIALV
                     VIGKWWLFPLALVPGYAFAWAAHFFIERNRPATFTHPLWSFMGDWKMLALMLTGRMKQ
                     "
     gene            4192..4860
                     /gene="nth"
                     /locus_tag="VHD88_01125"
     CDS             4192..4860
                     /gene="nth"
                     /locus_tag="VHD88_01125"
                     /inference="COORDINATES: protein motif:HMM:TIGR01083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HVS20412.1"
                     /translation="MRETKSQLKERTEKIIKLLKRAHPDAHCALTHSNAFELLIATIL
                     SAQCTDERVNIVTADLFRKYRKPEDYLNVAATELQQDVRTTGFFRNKTKSIQGACKML
                     VEEFGGEVPKTMEELLRLPGVARKTANVVLGVAFGIASGIVVDTHVSRLSQRLQPTKK
                     KDAGKIEQDLMEIVPRKDWIEFSHLLIFHGRRVCKARRPLCDECVVEKLCPSSILKTG
                     KLPK"
     gene            complement(4920..5192)
                     /locus_tag="VHD88_01130"
     CDS             complement(4920..5192)
                     /locus_tag="VHD88_01130"
                     /inference="COORDINATES: protein motif:HMM:NF023857.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family antitoxin"
                     /protein_id="HVS20413.1"
                     /translation="MNDKQKQIDPLPEEFSSYEEAAEFWDTHDTTDYPDSFETVAVQS
                     QFRRRRDEVEIDEELMNVLTELAKKRGVAISELVSGMLREKIRPAA"
     gene            complement(5492..6952)
                     /locus_tag="VHD88_01135"
     CDS             complement(5492..6952)
                     /locus_tag="VHD88_01135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HVS20414.1"
                     /translation="MKTQLARSVAVALLVLFFAQSSWATCGGGGGGGGGGMSNGGGGG
                     GSNAPVYVVPWKIHKPNDPPAMGLVLYWFPASNDELKKSSLRESRTLSLYASQCVSME
                     WADGHTLNADKLMGDSKLPVAVLAKPDGTPVSKVENTNGKLKVTDVEKLVDGEVKQRD
                     SALDAQMKDAAGKVRAGDNDGAIKIYKAVLDQKCMFPKRAKDAAKELKKLGVTEIASV
                     PAAPIFEPRQRARIERTMRRGLMAEMNAQYVTAEKLYQRAHQMDPADPTPLRYLAENY
                     RHNIGAWNKARSNFEAILNMPADPLSRSVAFHGLGKMTIHEGEFKKGLALMEQAVAEF
                     PLALAYRNLAVYWNSEGDPVKGFEYTQTALALDPKDPYNLVFAAVFMAANGHKDEALK
                     IARANVNLMPASYNLAAIYAENGQRDKALALLRRHFYHYERYQSVRAKEMMEARVDVV
                     FDSIRSDQSFIALTSGADGRLPMPMKNMNGASRENR"
     gene            complement(7144..7536)
                     /locus_tag="VHD88_01140"
     CDS             complement(7144..7536)
                     /locus_tag="VHD88_01140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20415.1"
                     /translation="MLTKTFLIFCVLGAFLLTECSKTETMNNSNSTAGNSNKAATMSS
                     PAKTTASSSGEKIGVPECDDFIAKYEACADKVPEAGRAQYKSSLAEWRKSWKQLAATP
                     ATKGTLAGICKQAAVQQAAALKSYGCTN"
     gene            7738..8301
                     /locus_tag="VHD88_01145"
     CDS             7738..8301
                     /locus_tag="VHD88_01145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20416.1"
                     /translation="MLAYVFWHWPSAEVNSEAYQKALLEFHQSLSAHKPAGFLYSIVF
                     RIRGAPWLAANVEGYEDWYIVDGSGALDVLNEAAVTYPSKQFHDRAAKRAAGGTAGLY
                     RFRRGQIDFSQARFGLWLSKPTGTSYDDFYASLSQVTSAPAVALWGRQMVLGPTPEFF
                     VLSPEKISLNESFNALTTGIELIWCGQ"
     gene            8305..9552
                     /locus_tag="VHD88_01150"
     CDS             8305..9552
                     /locus_tag="VHD88_01150"
                     /inference="COORDINATES: protein motif:HMM:NF004834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HVS20417.1"
                     /translation="MQPATMNVRCCIVGGGPAGMMLGFLLARAGVEVVVLEKHADFLR
                     DFRGDTIHPSTLEVMHELGILGDLLKRPHQEMSQLAGQIGDETIPLVDFSHLPTQCKF
                     IVFMPQWDFLDFIAEHAARYPTFNLKKQAEVTELITEGNSIVGVEAKTPNGPLEIRAD
                     LVVGADGRKSVVRERAGLQVESLGAPIDVLWFRLSRKPNDPGQALGRIVTGKIMVMFS
                     RDSYWQCGFVIPKGAFEDIKQCGINAFREDIATLAPFLRDRVGELQDWEPIKLLTVLV
                     DRLRQWYRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANVLARPLSEGWVSPSHLQ
                     KIQWRRELPTRLTQWAQVQVQNRVLGRVLGSTQQVAPPWFLQLFRRFPSLRRIPARLI
                     GIGVRPEHVKTPDVSGGQWSGGR"
     gene            complement(9833..>11257)
                     /locus_tag="VHD88_01155"
     CDS             complement(9833..>11257)
                     /locus_tag="VHD88_01155"
                     /inference="COORDINATES: protein motif:HMM:NF014342.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHHA1 domain-containing protein"
                     /protein_id="HVS20418.1"
                     /translation="VQIPTVTVKGEPSVRVQFLPGPYTKALQEFGATDFVGYKTTRLE
                     GARVIGLFNGKLGTELETLEVLFADDEGEVALDQTPFYAESGGQVGDVGRLINPTADA
                     GGTDLIASVEDTYSPAQGLIVHKIKIEKGTLKVGDTVTAEVDVEKRDATRRNHTATHL
                     MHAALREVLGTHVKQAGSVVAPTYLRFDFTHYQPLTDAEIEEIERLVNYHILRNEPVQ
                     TDEMAVEEAMRSGAMALFGEKYGEKVRVLSIKGAEGIFSKELCGGTHVRATGDIGVFK
                     ITSDESIASGVRRIRAITGIDAYERFREDEEIIEEVAGNLRTSRAELPTVIGKLQDEL
                     KKSRREADELRLKIASGAVGTSASNGDEAREIAGVRVLAREASGLDAAGMRQLSDTLL
                     ARIKSGVVVLGRSNDGKASLIVRTSDDLTKKVPAGLVIKELAPIIGGKGGGKADMAEG
                     GGNQPEKLSEALQASYGVIERMLS"
BASE COUNT         2363 a         3156 c         3168 g         2570 t
ORIGIN      
        1 tcgactaagg aaatcgacat catgacgctg gttatagaag aagaagcggt tgagagcctg
       61 cccattagca ttgatccaga gatcatgagc gggacgcccg tgttcgaagg aacgcgcgtc
      121 cctgtggagg ccttactgaa caacttggca gctggcgttt ccttgaatga gtttcttgag
      181 aactttccca cagtaaatcg tgaacaagcc gtggccgtgc tcaacttttc caatcaaact
      241 ttgaaaaacc tgggtcttag tgggtgagaa ttctgcttga cgaaggagtt ccgaaagtca
      301 ttcagacgcg tctgtcttac ttatcaatct cgacggtagc agacttgggc tggagaggta
      361 tcaagaacgg ggcgttactc gacttgatga cagagcgatt ccaagttctt attaccacgg
      421 acaggaatat ccctcaccaa cagaatcttg ccaggcgaaa tatctcggca gtcgtccttc
      481 cgacaaacga aattccgatc gtaatcaagc tactgccaca aattgaggaa ctgctaagga
      541 ggctgacgcc gggtgaggtc gccacaatat ctgagtcttc acgttgagca ctaggcatga
      601 tcatcgaaca aatcaccgtc accgcttttc agcaacacac gcgcatcgtt ggctgtgaaa
      661 aaaccaagct cgcgatctgc atcgatccgg gcgatggctc ggatgaaatc gtctcggcaa
      721 tcgacaaaca tggctttgag ttgcaggcga ttgcgtgtac gcacgcgcac atggatcaca
      781 tcggcggagt ggcagcgttg aagaaactga agccggaagc gaagatcatc attcaccccg
      841 cagacgaatt catttacgac gaactgccga accagccgtc ctggattggg attccgcgtt
      901 cacagtgggc cgagtacggc ttcaattacg agcagccgcc aaaggccgat gagcactgga
      961 gcgacgggca gatctacgaa gttggcgagt tgagtttcac gatcattcac tgtcccgggc
     1021 acacacccgg ccacgtcgtg ctgtttgagc cgaacgagcg aaaagttttc gttggcgatt
     1081 gtttatttgc aggttcaatc ggcaggactg acttgcctgg cggctcgacc gagcagttga
     1141 tggattcgct cttccggaag attctgccgc tcggcgacga cgtggaagtc tattcggggc
     1201 acggaccgac gacgaccatc ggggacgagc gccggacaaa tccttttctt accggcgtct
     1261 atcagatcgg aaaaggcgga aggatgtagg ggcggaccta cgtgtccgcc caaacagaag
     1321 gaagggcgca cacgcaggtg cgcccctact tcttacttat cgacgatgtc tttcttcagt
     1381 gtgccgacga atgccagcaa ttcgtctttc tccgctttcg gcacgttgaa tttgtcgagc
     1441 gtttcgacca ggtgcttcgc tgacgcgtcc cagtcgtcgc tcgtgattcc caaaccgtgg
     1501 tgcgaggtct tcatatcgcg acctgtgtaa aggcacggcc cgccggctgc cgcgcaaaac
     1561 tgatcgacaa tatgctggcg aattttcttg agcgagtcct cgctgtggcc gacaaagaat
     1621 ttggtgaatc gcttgtcggc gaccaggcgc ccgatgaaat cgtccaccac agcggcaatc
     1681 gcgttgtatc cgcccaggcg atcgtaaagc gattttttcg tttcctggcc gccacccgct
     1741 gacaagttca tcgatttgta agccgtcgcg gacgctccaa gaacgactaa cagacaaaaa
     1801 gccagagccg ctcgcttagt tatcttcatt tcggtgctcc tcttcggaat caaagttaat
     1861 tgaaaatcgt tcaatgcgtg gtcgcaacca cagggctcaa tctcaccgat gcgccgtcgc
     1921 ggttagcgcg gaccctgatc cggcgatggc tcgtgccttc cacattcgtg ctgtaagtga
     1981 tcgtgtaagc cgtgcgcagt tgcgcgacca cgtcgtcgta agctttctgc aaatcttcga
     2041 gtcgcttgat cgaatagaag acaccgccgg aggcctcggc catcttttgt ccctcctcag
     2101 ccgcgcgcgt cgtgatcgtc agatagcgcg tgcgcatcgg atcgaccgta atcgaaggcc
     2161 gcggcacgct ggattcagga actagacccg aaggcacgta cagcggatag atgagcgcgc
     2221 ccgattcaat tgtcgcttcg agaattgagg gaaacgggat gaacgatttg ttgtcgtcgc
     2281 cgtccgaaag aatcacgatc gccgtacgct cgccgcgcaa aggcttcagc gtgttaacca
     2341 aagtgtaagc cagcgcgtcg tacagcgccg tggcgccacc cgcgtcgatc tcgtcgagct
     2401 tctttgagag cagcgtgcga tcggtcgaga agccggagat cacctgaatg tcttcgcgaa
     2461 agctgatgat cgagatgcga tcctgcgggc tggtcgcgtt caaaaaatcg cgcgcggctt
     2521 tgcgaatgaa atcgatccgc tcttcgacgc tgccggaaac gtcgagcaac aggacgagat
     2581 tgaaaggctc agtcgccggc gcgacattga cgaccgtacg ttcgtttcca tcttcgtaaa
     2641 tcgcgaagtc cgagatgcgc aagccggcaa tggcgcggcc attgcgatcc atcacgctgg
     2701 cgttgacacg catcaactgc ggcgcgacgg cagtcgcgat ttcgccgggc gggcgctggc
     2761 tgaccagcgc gggctcgctg cgcggcggcg gcaaagtctt cgcataatcg ccaaacatgt
     2821 gcgggctgac tttgcgaatc gcatccgtca gcgggccgtc gccgctgcgc acgatcgcgc
     2881 gcgccgcttc ggtcagcggc cgctcgcgca ggtcgttcgg cgccatgctc ggatcgacgt
     2941 tcagcagaat gacaccgcgc tgcgtggtca ggttcaattg caccggctct tgcttctttg
     3001 gcttctgatc ggcagagtcg gccggctttg ccgtagcatc gttctgagat cccgtgtttt
     3061 cagcgaccgc gctatcgctc tctttctcaa ccttcttatg tttgctcttt ctgacattgg
     3121 gtcccaacgt gccggcgatc gaaaaagtgc cggcgcggcc ttctttgatc gacggtaatt
     3181 cgacgtcgct cagaaagcgc ggatggctcg attgccagag aaacttgaac ttgagcgaat
     3241 ccagcggcac gtctgcatga atcgttcccg tgttcgtgat cacgtcggcg acttcaaggt
     3301 cgccaataac gtcaaccatc ccggtctcgc tttcaatttt cacgcgcgag cgcggcggga
     3361 cgtgcacggt cagatcgatt cgatcctgcg cgcgtcgatc gcgcaccgtg atctcgccac
     3421 ttgacacgtt cacgtctccc ggctcaacgg gcgcgccggg cgaactcgct tgcacgatca
     3481 tcttgtcttt ctgactatcg gaggtgataa ctgagacgcg tccgttgcga ttcttgatcg
     3541 tgagcaagac ttttcccggt gtcgggaatt cacgttcgta gccttgcgcc gacgccttcg
     3601 gacccgaaat tgagacggcc atacaagcag caatcagaaa cgtagcgacc tggaagacgc
     3661 gccggagaac cctgccggaa aaaaatgaat tgccgaacat cgcgattgat cttgccttcg
     3721 cactgaggcg gtggtcaagt tagaacgagc ggcggcttct gctagaatga cacccgaaat
     3781 cttcgcgaga tgaaccagcg tcaattcaac tcattagccg acttctggcc gcattacctc
     3841 ggcgagcaca gcaagccggc gacgcgactg cagcacggcg tcggtaccat aatcgctctg
     3901 gcactggtaa tcgcgctggt cgtcattgga aagtggtggt tgtttccgct ggcgctcgtg
     3961 ccgggttatg ccttcgcgtg ggcggcgcat ttcttcatcg aaagaaatcg gccggcaact
     4021 ttcacgcatc cgctgtggtc gttcatgggc gactggaaaa tgctcgcgct gatgcttacc
     4081 gggagaatga agcagtagcc tcgcggcctc gctttgtcag taccacctgc ggtagcgggt
     4141 gggttaagcc ccggaacgga acgcttgccg agcagcgagt caatcgtaac tatgagagaa
     4201 accaagtctc aactgaaaga acgtaccgaa aagatcatca agctgctcaa gcgtgcgcac
     4261 cctgacgcgc actgcgcgtt gactcactcg aatgccttcg aacttttgat cgctacgatt
     4321 ctttccgctc aatgcactga cgagcgtgtc aacatcgtca ctgccgatct gtttcgcaaa
     4381 tatcggaagc ctgaagacta tctgaacgtc gcggcgaccg agttgcagca ggacgttcgc
     4441 accacgggtt ttttccgcaa caagacgaaa tcaattcagg gcgcgtgcaa gatgctcgtc
     4501 gaagaattcg gcggcgaggt gccgaagacc atggaagagt tattgaggct tcccggcgtc
     4561 gcgcgcaaaa ccgcgaacgt cgtgctgggc gtcgcctttg gcatcgcgtc aggaatcgtc
     4621 gtggacacgc acgtgagccg tctgtctcag cgtcttcagc ccacgaagaa aaaagacgcc
     4681 ggcaagatcg aacaggattt aatggagatc gttccgcgca aggattggat cgagttctcg
     4741 caccttttga tctttcacgg tcgccgcgta tgcaaggcgc gccggccgct gtgcgatgaa
     4801 tgcgtggtag aaaaactctg tccgtcgtcg atattgaaaa ccggtaagct gccgaagtaa
     4861 gggttgatgc aggcgcttgt tattccttca gagcttcaaa actaatcagg tcgccaaagc
     4921 tacgccgcag ggcgaatctt ttctctgagc atgccgctca ccagttcgct gattgcgacg
     4981 ccgcgctttt tggccagctc ggttaggacg ttcatcaatt cctcatcgat ctcgacctca
     5041 tcgcggcgac gcctgaattg tgattgcacg gcgacagtct caaagctgtc cgggtaatct
     5101 gtggtgtcgt gagtgtccca gaattccgca gcttcttcgt agctcgaaaa ctcttctggc
     5161 aatggatcaa tctgcttctg cttgtcgttc ataatatctt cgctcagaag tcgtcatatc
     5221 gcgggctgag attggcaatg cggcaacttg ttccttgcga atgaacaaga caatcagtat
     5281 cgaccactag ccgtttggcc gtatgctgtg tacaaatttt ctcctttgac atggcctttg
     5341 cgagcccggc gtatgtgaga cctgccaaat aatacttgct cgacctctcc cgtacgcaca
     5401 cgaagtttga cttcgatctt gtcaatgaat ctgtctttcc agatgacctc atgtaattcc
     5461 attacggctc atgacgctct tgctcttact tttacctgtt ctctcttgag gcaccgttca
     5521 tgttcttcat cggcatcgga agtcttccat cagcgccgct ggtcagcgcg atgaaagatt
     5581 gatccgagcg gatggaatca aagaccacgt caacgcgcgc ttccatcatt tctttcgcgc
     5641 gcacagattg atagcgctcg tagtgataga agtggcggcg cagcaacgcg agcgctttgt
     5701 cgcgctgtcc gttctccgcg tagatcgcgg cgaggttgta cgaagccggc atcaggttga
     5761 cgttcgcgcg cgcaatcttc agcgcttcat ctttatgccc gttagcggcc atgaagacgg
     5821 cagcaaacac gaggttgtaa ggatcttttg gatcgagagc gagcgccgtc tgcgtgtact
     5881 caaaaccttt gaccggatcg ccttcggaat tccagtacac cgcgaggttg cgatacgcga
     5941 gcgccagcgg aaactccgcg accgcctgtt ccatcaaggc cagacctttt ttgaactcgc
     6001 cttcgtgaat cgtcatcttg ccgagaccgt gaaacgcgac agagcgcgaa agcggatcgg
     6061 ccggcatgtt gaggatcgct tcaaagttcg agcgagcctt gttccacgcg ccgatgttgt
     6121 gacgataatt ctccgcgagg taacgcaacg gagtcgggtc cgcgggatcc atttgatgcg
     6181 cgcgttgata cagcttttca gcagtaacgt actgcgcatt catttccgcc atcaggccac
     6241 gccgcatcgt tcgttcgatc cgcgctctct ggcgcggctc gaatatcgga gcggcgggca
     6301 cgcttgcgat ctcagtcacg cctagtttct tcagttcctt cgcggcgtcc ttcgcccttt
     6361 tcgggaacat acatttttga tcgagcacgg ccttataaat cttgatcgcg ccgtcgttgt
     6421 cgccggctct cactttgccg gcggcgtcct tcatctgagc gtcgagcgcg ctgtcgcgct
     6481 gtttgacttc gccatcgacc agcttctcca cgtcggtgac tttgagcttt ccgtttgtgt
     6541 tctcgacttt gctcaccggc gtgccgtcgg gcttggcaag cacagcaact ggcagtttcg
     6601 agtcgcccat cagcttgtcg gcattgagtg tatgaccgtc ggcccattcc atggatacgc
     6661 attgcgatgc gtagagtgag agcgtgcgcg attcgcgcag actcgatttt ttcaactcgt
     6721 cattggacgc cgggaaccag tagagtacga gtcccatggc tggcggatcg ttgggcttgt
     6781 gaattttcca tggcaccacg taaacaggcg cattggaacc gccaccacca ccgccattcg
     6841 acatgccacc accaccgcct ccgccaccac caccgcaagt ggcccacgac gattgggcga
     6901 aaaagagcac gaggagtgca acggcgactg agcgtgcaag ttgtgttttc atggcgcgga
     6961 ttatagcaga ggagttacgc cgggccgtaa ggccgaggcg cgagttacat ggataagcgc
     7021 aaaaggccca agagtattcg gatgagaacg cgaagagaag tcctctcgcg acctgtgcaa
     7081 aaaaccttgc gccctttgcg cttgatgaaa gtgaccgcga ccgctcggtg gaagaggagc
     7141 cgatcagtta gtgcaaccgt acgacttcaa cgccgcggct tgttgcacag cggcctgctt
     7201 gcaaatgcca gccagcgttc ccttggttgc gggggtagcg gccagttgct tccaggactt
     7261 tcgccattca gctaagctcg atttgtactg ggcacgaccg gcctccggca ctttgtcagc
     7321 gcaggcctcg tatttggcga tgaagtcatc gcattccggc acgccgattt tttctccgct
     7381 ggatgaggcc gtggtttttg ccggactgct catggtcgcc gccttgttgg aattcccggc
     7441 agttgaatta ctgttgttca ttgtttcagt cttgctgcat tcggtcagca ggaacgcgcc
     7501 taagacacaa aaaataagaa aggtcttcgt cagcattagt gactcctcgg gttctgacag
     7561 gctgattgtc cgaacagcct taggatggaa ttgaaaagcg cggaaataat acacgggaag
     7621 gcaggaattt gatagcttta ttcaccggcc attagttaaa tgtcgtggcg ctgctttcct
     7681 tcggcgggaa gaagtacaga aggtcgcaga gcgcgggaga ggaagggaag gaaactaatg
     7741 ctcgcatacg ttttttggca ctggcccagc gctgaagtga acagcgaggc gtaccagaaa
     7801 gcgctgcttg aatttcacca gtcgctctcg gcccacaagc ctgccggatt tctgtattcc
     7861 atcgtgtttc gaattcgcgg cgctccgtgg ctcgcggcaa acgttgaagg ttacgaagac
     7921 tggtacatcg ttgatggttc cggcgcgctc gacgtgctca atgaagccgc cgtcacgtat
     7981 ccatccaaac aatttcacga tcgagcagcg aaacgtgcgg cgggaggcac ggcgggcctg
     8041 tatcgctttc gtcgcggcca gatcgatttc agtcaggcac gtttcgggtt gtggctctca
     8101 aaaccaaccg gaacatcgta cgatgatttt tacgcgtcgc tttcacaagt gacgagcgca
     8161 cccgcggtcg cgctttgggg gcgacagatg gtgctcggac caacgccgga gttttttgtg
     8221 ctgagcccgg agaaaatttc gctcaacgaa agcttcaacg ccttgaccac aggcattgag
     8281 ctgatttggt gcgggcaata gattatgcag ccggcaacca tgaacgttcg ttgttgcatc
     8341 gtcggcggtg ggccggcggg aatgatgctc ggctttctgc tggcgcgcgc gggtgtcgaa
     8401 gtcgtcgtac tggagaagca cgcggatttt ctgcgcgact ttcgcggcga cacgattcat
     8461 ccttccacgc tcgaagtgat gcacgagctg ggaatcctcg gggacttgct caagcgaccg
     8521 catcaggaaa tgtctcagct cgccgggcaa atcggcgacg aaaccatccc gctcgtagat
     8581 ttctcgcatc taccgacaca atgcaagttc atcgtgttca tgccgcagtg ggactttctt
     8641 gatttcatag ccgagcacgc cgcgcgctat ccgacgttca atctcaagaa gcaagcggaa
     8701 gtaactgagc taatcacaga agggaacagt attgtcggcg tggaagcgaa aacgccgaat
     8761 gggcctttgg agattcgcgc ggacctggtc gtcggcgccg atggtcgcaa gtcagttgtg
     8821 cgtgagcgag cgggtttgca ggtcgagagt ctcggcgcgc cgatcgatgt gttgtggttt
     8881 cgtctctctc gcaaaccgaa cgatcccggg caagccctgg gccgcatcgt caccggcaag
     8941 atcatggtga tgttcagtcg cgatagttac tggcagtgcg gctttgttat tcccaaagga
     9001 gcctttgaag acataaagca gtgcggcata aatgcttttc gcgaagacat cgcgacgctt
     9061 gctccttttc tgcgcgaccg cgtcggtgag ttgcaagact gggagccgat caaactcttg
     9121 actgtgctgg tggatcgttt gcgccagtgg tatcgaccgg gtctcttgtg catcggcgac
     9181 gcggcgcacg caatgtcgcc ggtcggcggc gtgggaatta atctcgcgat tcaggacgca
     9241 gttgccgcgg cgaatgtcct cgcgcgaccg ttatccgaag gatgggtttc accgagccac
     9301 ttgcagaaaa ttcagtggcg gcgcgaattg ccgacgcgtc tgacgcaatg ggcgcaggtc
     9361 caggtgcaga accgagtgct tggccgcgtg ctcggcagca cgcagcaagt agcgccgccg
     9421 tggtttcttc agctcttcag acgattccct tcgctgcggc gaatccccgc gcgtctgatt
     9481 gggattggtg tgcgaccaga acatgtgaag acgccggatg tgagcggtgg gcagtggagc
     9541 ggtgggcggt gagcagtgca cacgtttaga ggcgggctac tgcccgcctt caattcgtta
     9601 cgagattgga ttctgagtcc gcgaggcgga cgaacggaaa tagtccagcg cttcagcgct
     9661 gggtactcca agtgaaaaag aaaagagccc gcggcagcgg gcgacagagg ttacggaagt
     9721 agtagcgacc gtgtgcgaga attcaactag cgagtcatcg actatctgtt tcgcttatct
     9781 tcacaagttg agcgtagcat ccgctcgcta ccgctcgcgg ctctgccgaa cctcagctaa
     9841 gcatccgttc aatcacgcca tagctcgcct gcagcgcttc ggaaagcttt tccggctggt
     9901 tgccgccgcc ttcggccata tcggctttgc ctccaccttt tcctccaatg atgggtgcaa
     9961 gctccttaat aactagcccg gcaggaactt tcttggtgag atcgtctgag gtgcgcacga
    10021 tcagcgaagc cttgccgtcg ttgctgcgac ccagcacaac cacgccggat ttgattcgcg
    10081 ccagcagagt atccgagagt tgacgcatgc ccgcggcgtc gagcccgctg gcttcacgcg
    10141 cgagcacgcg cacgccggcg atttcacgag cttcatcacc gttcgacgcg gaagttccta
    10201 cagcgccgct ggcaattttc aaacgcagtt catcagcttc gcgtcgcgat ttcttgagtt
    10261 cgtcttgcag cttaccgatt actgtaggca attcagcgcg cgaagttctt aagttgccgg
    10321 cgacttcttc gatgatctct tcatcttcgc gaaagcgttc gtaagcatcg atgcccgtga
    10381 tggcccggat acgccgcaca ccggaagcaa tcgattcgtc gctggtgatc ttgaagaccc
    10441 caatgtcgcc ggtcgcgcgc acgtgcgtgc cgccgcacaa ttctttcgag aagattcctt
    10501 cggcgccttt gatggaaagc acgcgcacct tctcgccgta cttttcgccg aacagggcca
    10561 tcgcacccga acgcatcgcc tcttcaaccg ccatctcgtc cgtctgcacc ggctcgttcc
    10621 gcaggatgtg atagttcacc agacgctcaa tttcttcgat ctcggcgtcg gtcagcggtt
    10681 gataatgcgt aaaatcaaac cgcagatagg tcggcgcgac gactgagccg gcttgcttga
    10741 cgtgcgttcc cagaacttcg cgcagcgccg catgcatcaa gtgcgtcgcc gtgtgattgc
    10801 gtcgggtagc gtcgcgcttt tcgacgtcga cttcagcagt caccgtgtcg cccactttca
    10861 aagttccttt ttcgattttg attttgtgaa cgatcagacc ctgagcgggt gagtaggtgt
    10921 cctcaaccga cgcgatgagg tctgtaccac ccgcgtcagc ggttgggtta atgagtcgac
    10981 caacgtcacc aacctgtcct ccactctccg catagaacgg cgtttgatct aaggcaactt
    11041 caccttcgtc atcggcgaat aatacttcca aagtctccaa ctcagttccc agcttcccgt
    11101 tgaacagccc aatcacgcga gcaccttcga gacgggtagt cttgtaaccc acaaagtccg
    11161 tcgcaccaaa ctcttgtaga gcttttgtgt agggccccgg aagaaactgc actctgactg
    11221 aaggttctcc cttgactgtt actgttggaa tttgaac
//
LOCUS       DASZZE010000064         5051 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_34844, whole genome shotgun sequence.
ACCESSION   DASZZE010000064 DASZZE010000000
VERSION     DASZZE010000064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5051)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5051)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5051
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34844"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..876)
                     /locus_tag="VHD88_01160"
     CDS             complement(<1..876)
                     /locus_tag="VHD88_01160"
                     /inference="COORDINATES: protein motif:HMM:NF012927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20419.1"
                     /translation="MWKFANPIKHQISEARWPTAEEAAGSLLFQPIDIGPLTIESRTW
                     VPAMVPWRATEDGFVTQDNLDWYRRFAEGQPAAIVVEATGIRDIPSGPLLRIGHDRFL
                     PGLRKLVETVREASEGHTKLFIQIIDFLTVKRRPDSSKYFARFLEITERHRQAMAEIT
                     EDSNWLSANEAKTRAFLADAPDEVVDRVLNERELESLRFGYRERVTDTHLPHVRELPQ
                     VLPSIFADAARRAREAGFGGVELHYAHAYTMAGFLSALNDRDDGYGGPRENRVRLPLE
                     VYRAVRKTVGDDYVVG"
     gene            1043..2239
                     /locus_tag="VHD88_01165"
     CDS             1043..2239
                     /locus_tag="VHD88_01165"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HVS20420.1"
                     /translation="MNDNLLKWRSEFPILDRAVYLISHSLGAMPRATYDRLHEYADVW
                     ATRGVRAWAEGWWDMPVTIGNEVARIIGAEDGTVVMHQNVSICQSLILSCFLPLPENS
                     KRRKIVYSELNFPSVMYVYEAHAREHGLRIETVKSDDGITVPLERMLAAIDEETLLVP
                     ISHVLYKSAFLQDAKAITERAHEVGAMVVLDTYQSAGTVPFSVEEVNVDFATGGSVKW
                     LCGGPGAGYLYVRPDLIDRLEPKTTGWMAHEEPFAFESELRYASNITRFLHGSPAIPA
                     LYAAESGYKIINEIGVAAIREKSMRQTQRLIELAKEAGFRVTSPQNPAQRGGTVTVWD
                     DNAAAITKELIRHEFIVDYRPGAGVRISPHFYTKDEELDLVISEMKKIRETRAYAAQE
                     KVGAAF"
     gene            2354..3214
                     /locus_tag="VHD88_01170"
     CDS             2354..3214
                     /locus_tag="VHD88_01170"
                     /inference="COORDINATES: protein motif:HMM:NF015272.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004833 - tryptophan 2,3-dioxygenase
                     activity [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0019441 - tryptophan catabolic process to
                     kynurenine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan 2,3-dioxygenase family protein"
                     /protein_id="HVS20421.1"
                     /translation="MSKNDYGKNALLSYNKYLRVPELIDLQTCLSSPAHHDELLFITV
                     HQAYELWFKQILHEIDAAIVLMKEDRPAESAQALRRVVEIEKLLIAQIHLLETMKPIS
                     FLAFRDELNPASGFQSMQFREIEFSSGLKDADVLRGFARDDFARKRLETRMRAPSLSE
                     AFFALLRRRGFDTPASDVPRDEKERRTNHGKRQRAVCEVLTRPEKLNEEYQLAEALLE
                     HDEYFSLWRSHHIKMVERMVGTKRGTGGSEGVGYLQKTLDKKFFPEIWEARTFLTTKH
                     DDKGCPFAKT"
     gene            3284..3484
                     /locus_tag="VHD88_01175"
     CDS             3284..3484
                     /locus_tag="VHD88_01175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20422.1"
                     /translation="MSRNVQYVTDSNGERTAVILPLEEYEELLEDLHVIRVAEETKDE
                     PRVPWEQVKAELVSEGKLDADA"
     gene            3471..3740
                     /locus_tag="VHD88_01180"
     CDS             3471..3740
                     /locus_tag="VHD88_01180"
                     /inference="COORDINATES: protein motif:HMM:NF016876.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008657 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) inhibitor activity
                     [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_process: GO:0030541 - plasmid partitioning [Evidence
                     IEA];
                     GO_process: GO:0051290 - protein heterotetramerization
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HVS20423.1"
                     /translation="MPTPDAYSVSLSSRARRETRKLDRQILARIAKAIDSLVENPRPP
                     GCLKVKDKESLWRIRVGDWRIGYEIDDEKRLVTIITVGHRREFYD"
     gene            3748..>5051
                     /locus_tag="VHD88_01185"
     CDS             3748..>5051
                     /locus_tag="VHD88_01185"
                     /inference="COORDINATES: protein motif:HMM:TIGR02262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016405 - CoA-ligase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="benzoate-CoA ligase family protein"
                     /protein_id="HVS20424.1"
                     /translation="MPIDFPERFNMADYFLYHNLEEGRENKVCLYFEDLTFTYGDATR
                     MSNRAGNALREVGVEIEDRVLIVLPDCPEFVWTWFGAARIGAVITMVNPLLPTDDYRY
                     YLEYTRARAAIVHESLMKPFAEAAQDSDYLRATLVVRNKSAVDEDPTDSEPSRVKFLS
                     FDETVASQPGACRAADTHRDDIAIWLFTSGSTGHPKGTVHLQHDLPYNTEVFAKRTMG
                     VNENDLTVSVPKLFFGYATGTNLLFPFAVGGATALFAERSTPEKMFEVIARYRPTILT
                     TVPTMINAMLNVEDTNKRDLSSIRFCYSAGEALPIELYHRWKETLGVEICDGIGSAEM
                     FHIYITNRPDDVKPGSLGRIVEGYEAKIVDGIDNELATGEMGTLKIKGDSAALCYWNA
                     QRASKETFAGDWCTTGDQFHVDADGYYWCHGRTDDMLKVGGV"
BASE COUNT         1146 a         1372 c         1442 g         1091 t
ORIGIN      
        1 gccgaccacg taatcatcgc cgaccgtttt gcgcaccgcg cgataaactt cgagcggcaa
       61 gcgcacgcga ttctcgcgcg gtccgccata gccatcgtcg cgatcgttca gcgcgctcaa
      121 gaaacccgcc atcgtgtagg cgtgcgcgta gtgcagctcg acgccaccaa atccggcttc
      181 gcgcgcgcgc cgcgcggcgt cggcaaagat cgacggcaaa acttgcggca gttcacgaac
      241 atgcggcaga tgcgtgtccg tcacacgctc gcgataacca aaacggagag attcgagttc
      301 gcgctcgtta agcacgcgat cgacaacttc gtccggcgcg tcagcaagaa aggcgcgagt
      361 ttttgcttca ttcgcgctga gccagtttga gtcttcagtg atttccgcca tcgcctgacg
      421 atggcgctca gtgatttcaa gaaatcgcgc aaaatacttt gaactgtcag ggcgacgctt
      481 caccgtcaga aagtcgatga tctgaatgaa gagtttcgtg tggccttcgc ttgcttcgcg
      541 cactgtctcg actaacttcc tcaatcccgg aagaaatcga tcatgcccga tgcgcagcaa
      601 tggtccgctg ggaatatcgc ggatgccggt cgcttcgacg acgatggcgg caggttgacc
      661 ttcggcgaat cgtcgatacc aatcaaggtt gtcctgtgtg acgaagccgt cttcggtcgc
      721 acgccacggc accatcgccg gcacccacgt gcggctttca atcgtgagcg gaccaatatc
      781 gataggctga aacaataacg atccggctgc ttcttcggct gtgggccaac gcgcttcaga
      841 gatctgatgt ttgattgggt tcgcaaactt ccacattgcg agaatcactt taacacggag
      901 ctctacagca ccggagttta gaggcgggcg ttgcccgcct gcgagggcaa cgccctcgcg
      961 ctaaacggca gccattcatt tcttaaggtc tctcgctggt ctctgtgtta aattaggcgc
     1021 atagcaagac ggagtacgac tcttgaacga caaccttctc aaatggcgca gtgaatttcc
     1081 gatcctggac agagcggtct atctgatctc gcatagtctc ggcgcgatgc cgcgggcgac
     1141 atacgatcgt ttgcatgagt acgccgacgt ttgggcaacg cgcggcgtgc gcgcctgggc
     1201 cgaaggctgg tgggacatgc cggtgactat cggcaatgag gtcgcgcgta tcatcggcgc
     1261 cgaagacggc acggtcgtga tgcatcagaa cgtttccatt tgtcagtcgc tgattctttc
     1321 ctgttttctg ccgctgccgg aaaactcgaa acgcagaaaa atagtttact cagaactgaa
     1381 ttttccttca gtgatgtatg tgtacgaagc gcatgcgcgc gaacacggtc tgcgcatcga
     1441 aacggtgaag tccgacgacg gcatcacggt gccgctggag cgaatgctgg ccgcgatcga
     1501 cgaagaaact ttgctcgtgc ccatttcaca tgtgctttac aagagcgcct tcctgcaaga
     1561 cgcgaaagcg atcaccgaac gcgcgcacga agttggcgcg atggtcgtgc tcgacactta
     1621 tcaatcagcc ggcacggtgc cttttagcgt ggaagaagtg aatgtcgatt tcgcaactgg
     1681 cggctcagtg aagtggcttt gtggcgggcc gggcgcggga tatctttacg tgcggccgga
     1741 tttgattgat cggctcgaac cgaaaactac aggctggatg gcccatgaag agccgttcgc
     1801 gtttgagagc gagttgcgtt acgcttcgaa catcacgcgg tttctccacg gctcgccggc
     1861 gattccggcg ctgtatgcgg cggagagcgg ctacaagatc atcaacgaaa ttggcgtcgc
     1921 cgcgattcgc gagaagagca tgcgacaaac acaacgcttg atcgaactcg ccaaagaagc
     1981 cggctttcgc gtgaccagtc cgcagaaccc cgcgcagcgc ggcgggacgg tcactgtctg
     2041 ggacgacaat gctgctgcga ttaccaagga gttaattcgc cacgaattca tcgtcgatta
     2101 ccgtccgggc gcaggcgtgc gcatctcgcc gcacttctac acgaaggacg aagagctgga
     2161 cctggtcatc agcgagatga aaaaaatccg cgagacgcga gcctacgcag cgcaggaaaa
     2221 agtcggcgcg gcgttttgag attctctgcg tgtctctgcg aacacctctg taccctctgt
     2281 ggttgagttg ggctcggtac attccaccac agaggtcaca gaggtggcac ggagttccac
     2341 ggagaggaac aacatgtcaa aaaacgacta cggcaagaac gctctgctct cttacaacaa
     2401 atacctgcgc gtgcctgagc tgatcgactt gcaaacctgc ctgtcgtcgc cggcgcatca
     2461 cgacgaattg cttttcatca ccgtgcatca ggcttacgag ctttggttca agcaaatcct
     2521 gcacgagatc gacgcggcca ttgttttgat gaaggaagat cgcccggccg aatcagcgca
     2581 ggcgctgcgc cgcgtggtcg agattgagaa gcttctcatc gcgcagattc atcttctgga
     2641 aaccatgaag ccgatcagct ttctcgcttt ccgcgatgaa ctgaatccag cgagtggctt
     2701 tcagtcgatg caatttcggg agatcgaatt ctcttcggga ttgaaggacg ctgacgtttt
     2761 gcgcgggttt gcgcgagacg attttgcccg taagcgcttg gagacgcgca tgagagcgcc
     2821 ttcactcagc gaggcatttt ttgctttgct gcggcggcgc ggcttcgaca cgcctgccag
     2881 cgacgtcccg cgcgacgaga aagaacgccg caccaatcat ggcaaacgcc agcgcgccgt
     2941 ttgcgaagtt ctcacgcgtc cggaaaagct caatgaagag tatcaactgg ccgaagcgct
     3001 actcgaacac gacgaatact tttcgctgtg gcggtcgcat catatcaaga tggtcgagcg
     3061 catggtcggc accaaacgcg ggacgggcgg ttcggaaggc gtcggctatt tgcagaaaac
     3121 tctggacaag aagttctttc ctgagatctg ggaagcgcga acgtttctca ccacgaagca
     3181 cgacgataag ggttgtccgt ttgctaagac ttaatcggtc tactgcctct gcaactggga
     3241 ccggcagccg tgatagaatc tcttcaagtt tggagcaact gtcatgtcaa ggaatgttca
     3301 atacgttacg gattccaatg gcgagagaac agcagtaatc ctgccactcg aagagtacga
     3361 ggagttactt gaagacttgc atgtaattcg agtcgcagaa gaaacgaaag acgagccgcg
     3421 tgtaccatgg gaacaggtga aagctgagct ggtatcagaa ggtaagctcg atgccgacgc
     3481 ctgatgctta cagtgtctca ctaagttcgc gagcgcgcag agaaacgcgc aagctcgacc
     3541 gtcagatttt ggcccgcatt gccaaagcga ttgacagcct agttgaaaat cctcgtcctc
     3601 ccgggtgtct taaagtaaaa gacaaagaga gtttgtggcg cattcgtgtc ggcgactggc
     3661 gaatcggcta tgagatcgac gacgaaaaac gtctggtcac gatcataacc gtaggtcatc
     3721 ggcgagaatt ctatgattga gtctaagatg cccatcgatt tccccgaacg cttcaacatg
     3781 gccgactact tcctctatca caaccttgag gaagggcgcg agaataaagt ctgtctctac
     3841 ttcgaggatc taactttcac ttacggcgac gcaacgcgga tgtcgaatcg cgccggcaat
     3901 gcgctgcgcg aagtcggcgt cgagatcgaa gatcgcgtgc tcatcgtgct gcctgattgt
     3961 ccagagtttg tttggacgtg gtttggcgcg gcgcgcatcg gagctgtaat cacgatggtc
     4021 aacccgctgt tgccgacgga tgactatcgc tactaccttg aatacacccg cgcgcgcgcg
     4081 gcgattgttc acgagtcttt gatgaagccg tttgcagagg ccgctcaaga ttctgattat
     4141 ctgcgggcga cgcttgtagt tcgtaataag agcgcagttg acgaagaccc gacggattcg
     4201 gagccaagcc gcgtcaagtt tctttcgttc gacgaaaccg ttgcttccca acccggtgcc
     4261 tgccgggccg ccgacacgca tcgcgacgac atagcgatct ggctgttcac ttccggctca
     4321 accggccatc caaaaggcac ggtgcatctg caacacgact tgccttacaa caccgaagtc
     4381 tttgcgaagc gtacgatggg tgtgaacgaa aacgatctga cggtttcggt tcccaaactc
     4441 ttttttggct atgcgacggg aacgaatttg ctctttccgt ttgcggtagg cggcgcaacc
     4501 gcgcttttcg ccgaacgctc gacgccggaa aagatgttcg aagtaatcgc gcgttatcgt
     4561 ccgacgattc tcacgaccgt gccgacgatg atcaatgcga tgctcaatgt cgaagacacg
     4621 aacaagcgcg acttatcgag cattcgtttc tgctattcgg ccggcgaggc tttgccgata
     4681 gagctttatc atcgctggaa agaaacgctt ggtgttgaga tttgcgacgg catcggctcg
     4741 gctgagatgt ttcatatcta catcacgaat cggccggacg atgtgaagcc gggcagtctg
     4801 ggccgcatcg tcgaaggcta cgaagcgaag atcgttgatg gcatcgacaa cgaactagcg
     4861 accggcgaga tgggcactct taaaatcaaa ggcgactcgg cagcgctctg ctactggaac
     4921 gcgcaacgtg catcgaaaga gactttcgcg ggcgattggt gcacgaccgg cgatcagttt
     4981 catgttgacg ctgacggtta ctactggtgt cacggccgca cggatgacat gctgaaagtc
     5041 ggcggcgtct t
//
LOCUS       DASZZE010000065         3259 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_67743, whole genome shotgun sequence.
ACCESSION   DASZZE010000065 DASZZE010000000
VERSION     DASZZE010000065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3259)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3259)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3259
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67743"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2487
                     /locus_tag="VHD88_01190"
     CDS             <1..2487
                     /locus_tag="VHD88_01190"
                     /inference="COORDINATES: protein motif:HMM:TIGR01733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HVS20425.1"
                     /translation="RGVGPDTRVGICIGRSPEMIVGLLGILKAGGAYVPLDPDYPQAR
                     LKFMLEDARVPVLLTQSALLQNLPPNAAEVICIDELREKIARESRDNPQIVTTADNLA
                     YVMYTSGSTGKPKGVAVKHRNVVRLVKNTNYANFSADEVFLQFAPVSFDASTFEIWGS
                     LLNGARLALMPPARVSLKELGSALKRYRVTTLWLTAGLFSLMVENHLDDLRGLRQLLA
                     GGDVLSVPHVRRVVEELKDCCLINGYGPTENTTFTCCYPVNDLAKVNGSVPIGYPISN
                     TSVYILDAWMDPTPIGVPGELYIGGDGVAGGYLDRPELNAERFVRDLFSKVSGARLYK
                     TGDLVRYRASGEIEFIGRIDNQVKVRGFRVELGEIEAALAEHPSVREAVVVARKDEGD
                     KHLVAYLVPREDQIPAIDEVRDFLKQRLPDHMVPPVFVMLESLPLSPTGKVDRYALPS
                     TNGLKPTTVTTFAAPSDELELKLTRVWEKVLGIGSIGVNDNFFELGGHSLLAVRLFAL
                     IEKSFGRNLPLATLFQAPTVKQLARVLREEGWPAPWSSLVMIQGGDERLPFFCVHAAG
                     GNVLEYRDLARLLGPDQPFYGLQAKGLDGKQEPHTTIKEMAAHYIEEMREVQPEGPYL
                     IGGRSSGGTIAFEMACQLAAEGQKVALLALLDTYPAGYFKLLPGSGTLAQRVTRYAKK
                     LESHIDNLHQLGAREKFGYLLNKLEYAPEKIKHKLYRRAYKIYKRVGRPLPPVLKNIE
                     EINFAAVKDYVPQTYSGSVTLFFASDLTADYDLRDGWRELIDGGIDTHEIPGNHINII
                     KERHVGALAEKLRSCLDKVQEDHSVVWRAA"
     gene            2496..>3259
                     /locus_tag="VHD88_01195"
     CDS             2496..>3259
                     /locus_tag="VHD88_01195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20426.1"
                     /translation="MKRLSYKLSFCIVLLIFLPPRTFAQCGVERWSVKTGTDADVGLV
                     NLSSATATTIASLSARAAPNPIPDNNRVRPTETTLFVVNATLKEYVLAYDSDYHMVLV
                     DEAGRTMIAEIPAPSCVGPGSPFASGIAHARAQFDAMFTATTGFQTANVPVQVTGVGF
                     FDHLEGQEGVAPNGIELHPIINIIFNPNFSISSSVLSLTIGQGGSGTSTITTSLSGNF
                     NSSISLSASGLPAGVTASFSPASIAAPGAGSSTLTIS"
BASE COUNT          686 a          895 c          951 g          727 t
ORIGIN      
        1 cgtggagttg gacccgacac gcgagtgggc atctgcatcg ggcgttcacc tgagatgatc
       61 gtcggtctgc ttggcatctt gaaagctggc ggagcatacg tgccgctgga tccggattac
      121 ccgcaagctc gcctgaagtt catgctcgaa gatgcgcgcg tgcctgtgct cctgacgcaa
      181 agcgccttgt tacagaatct gccgccgaac gccgcggaag tgatctgcat agatgagctg
      241 cgggagaaaa ttgcgcgcga gagtcgggac aatccgcaaa tcgtaacgac cgcggacaat
      301 ctggcatacg tgatgtacac gtcgggttcg acgggaaagc ctaaaggcgt agcggtgaaa
      361 catcgcaacg tcgtgcgact cgtcaagaat acaaactatg cgaacttttc ggccgatgaa
      421 gtctttctgc aattcgcgcc cgtctcgttt gacgcttcaa cttttgagat ttgggggagc
      481 ctgctgaacg gcgcgcggct cgcgctgatg ccgccggcaa gagtttcgtt gaaagagtta
      541 ggttcggcgc tcaagcgata tcgcgtgacg acgctgtggc tgaccgcggg gctgtttagt
      601 ctgatggttg agaatcatct cgatgacttg cggggcctgc gccagttgct tgccggtggc
      661 gacgttctgt ccgtgccgca cgtgcgcaga gttgtcgagg agttgaaaga ctgctgtctg
      721 atcaatggtt acggcccaac tgagaacacg actttcacat gctgctatcc cgtgaacgat
      781 ctggcgaagg tcaacggctc agtgccgatt ggttatccga tctcgaacac ttctgtttac
      841 attctcgacg cttggatgga tcccacacca atcggagtgc cgggcgagct ttacatcggc
      901 ggcgacggag ttgcgggcgg ctatctcgat cggcccgaac tcaatgccga gcggttcgtg
      961 cgcgatcttt tttcgaaagt ttccggagcg cgtctgtaca aaaccggcga cctggttcgt
     1021 tatcgcgcaa gtggcgaaat cgagttcatc ggccgcatcg acaatcaagt caaagtgcgc
     1081 ggattccgcg ttgagttagg cgaaatcgaa gcggcgttgg ccgaacatcc atccgttcgc
     1141 gaagccgtcg ttgtcgctcg caaagatgag ggcgacaagc atctggtcgc gtatctcgtg
     1201 ccgcgtgaag accaaatacc ggcaattgat gaagtgcgcg actttctgaa acagagactg
     1261 cctgaccaca tggtcccgcc ggtttttgtg atgctcgaat cgttgccgct ttctccgacc
     1321 ggcaaagtcg atcgctacgc gctgccttcg accaacggtc tcaaacccac cacggtcaca
     1381 acttttgctg cgccctcgga tgaactggaa ctgaagctga ccagggtctg ggaaaaagtt
     1441 ctgggcattg gttcgattgg cgtcaacgat aacttcttcg aactcggcgg tcattcgctt
     1501 ttggcggtgc gtctgttcgc gctgatagaa aaatcgttcg gcagaaatct tccattggcg
     1561 acgctctttc aggcgccgac cgtaaagcaa ctcgcgcgcg tcctgcgcga agaaggctgg
     1621 cccgcgccgt ggtcttcgct ggtgatgatt cagggaggcg acgagcgtct gcctttcttc
     1681 tgcgttcacg cggccggtgg caacgtgctc gagtatcgcg acctcgcgcg gctgcttggt
     1741 cccgatcaac cgttctacgg attgcaggcg aagggactgg acggcaagca agagccgcac
     1801 accacgatca aagagatggc cgcgcactac attgaagaga tgcgcgaagt gcaacccgaa
     1861 gggccatatc tgatcggcgg ccgctcatcc ggcggcacga tcgcgttcga gatggcttgc
     1921 caactcgccg ctgaaggaca aaaggtagcg ctattggctt tgcttgatac ttaccccgcc
     1981 ggttacttca agctcttgcc gggttcaggc actttggctc agcgcgtcac gcgctacgcg
     2041 aagaagttag agtcgcacat cgataacctg caccaactcg gggcgcgcga aaagtttggt
     2101 tatctgctca acaagctgga gtacgctcca gaaaaaatca agcacaagtt gtatcggcgc
     2161 gcctacaaga tttacaaacg cgtcggtcgg ccgctgcccc cggtcttgaa gaatatcgaa
     2221 gagatcaact ttgccgccgt gaaggattac gtgccgcaaa cctattcggg cagcgtaacg
     2281 cttttcttcg ccagcgatct gaccgctgat tatgacctgc gcgacgggtg gcgagaattg
     2341 atcgatggcg gcatcgacac tcatgaaatc cccggcaatc acatcaacat catcaaagaa
     2401 cggcatgtgg gcgcgctggc tgagaaattg agaagctgcc tcgataaggt tcaagaagat
     2461 cattccgtgg tttggcgagc agcttgatat tcgtgatgaa aagattgtct tacaaactgt
     2521 cgttttgcat cgtcctgttg atttttcttc ccccgcgcac gttcgcgcag tgtggtgtcg
     2581 agcgctggtc ggtaaagacg ggcacggacg cggatgtagg tttggtgaat ctcagctcgg
     2641 cgaccgcgac aacgattgca agtctatcgg cgcgcgccgc gccgaatccg attcccgaca
     2701 acaatcgcgt gcggccaacc gaaacgacgc tctttgtggt gaatgccacg ttgaaagaat
     2761 acgtgctggc gtacgactcg gattaccaca tggtcttagt tgacgaagcc gggcgcacga
     2821 tgatcgcgga gattcccgcg ccgagttgcg tcggccccgg cagccctttt gcctccggca
     2881 tagcccatgc gcgcgcgcag tttgacgcca tgttcacggc gacaaccggt tttcagacgg
     2941 caaatgtgcc ggtgcaagtt accggcgtcg gattctttga tcatctcgaa ggccaagagg
     3001 gcgtcgcgcc gaacggcatc gagttgcacc cgatcatcaa catcattttt aatccaaact
     3061 tttcgatctc ttcttcagtg ttgtcgttga cgattggcca aggcggatcg ggaacgtcaa
     3121 cgatcacgac ctcgctttcg ggaaacttca attcgtcgat ttcgctttcg gcgtcgggct
     3181 taccggcggg agtgacggcg agtttcagtc cggcatcaat cgctgcgccc ggcgcaggct
     3241 catctacttt gacaatctc
//
LOCUS       DASZZE010000066        10324 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_229326, whole genome shotgun sequence.
ACCESSION   DASZZE010000066 DASZZE010000000
VERSION     DASZZE010000066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 10324)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10324)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10324
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_229326"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2074
                     /locus_tag="VHD88_01200"
     CDS             <1..2074
                     /locus_tag="VHD88_01200"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CHAT domain-containing protein"
                     /protein_id="HVS20427.1"
                     /translation="ANKHFQNALEAGSGALPVVAKLGQTRRFRAAARTSLGDVALRQA
                     RYKDAAKLFTDAATGAQKDNRLDLVWPAKRGLGRSLWLQAAQEKDSKAGKLREDALAA
                     YRDALKTIETIRAGSLRADESRTTFLATTKDVYDEASSALAEMALLSSSSGGSLIGKA
                     LDYAAESFKVSEAGRARSLLDMLGEVNAQITEGVPPDLLKRKQDNLDRQQAIAEQLTG
                     ISLSGDRKEKPSKLEDQLDQLQTEFDDIENQIRTASPRYAALTAAQPLALADVQQTVL
                     DDNTILLEYSLGTDSSYLFAVTRAGVSLFKLPARPEVDKLATDFRAQLIPPKLQRRIV
                     GIDVAADQARGLGLVQGPSENLNAFVAASNALYKAVVEPASSLIADKRLLVVADGALN
                     YVPFEALVKTADGSDYASLSYLVKTNEIVYAPSASVIAAIRQQGSKPSGKNLLVVADP
                     VFSPTDPRLKGGAATQTSGEARGLGLGLESAVSDVAGPSEPAGGLQLARLPGTRVEAE
                     EIAKIARAAGRQPDLWTDLNASEDNLRSRDVTNYRVVHIATHGLLNAERPQFTGVVLS
                     LVGNKSSDGFLRTDEIFNLRMGAPLVMLSACETGLGKEKRGEGVIGLTRAFMYAGAPT
                     VGVSLWSVADKSTAELMADFYQRLLNTSKPSSASSAMRDAQLAMISGKKYSAPFYWAP
                     FVLVGEWR"
     gene            2835..3470
                     /locus_tag="VHD88_01205"
     CDS             2835..3470
                     /locus_tag="VHD88_01205"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAT domain-containing protein"
                     /protein_id="HVS20428.1"
                     /translation="MEAQSTMLRAQNGSGLQFARLSGTRTEAEGIAKVARTGGSQSDL
                     WLDLNASEDNVRNRDVAGYRVVHIATHGLLDAERPQFSGVVLSLVGNKTGDGFLRTDE
                     VFNLKLGAPLVMLSACETGLGKEKRGEGVIGLTRAFMYAGAPTVGVSLWSVADKSTAE
                     LMTDFYQRLLGSSTANSPSVALREAQLAMINGKKYSAPFYWAPFVLVGEWR"
     gene            3555..3905
                     /gene="ytxJ"
                     /locus_tag="VHD88_01210"
     CDS             3555..3905
                     /gene="ytxJ"
                     /locus_tag="VHD88_01210"
                     /inference="COORDINATES: protein motif:HMM:TIGR04019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bacillithiol system redox-active protein YtxJ"
                     /protein_id="HVS20429.1"
                     /translation="MQNHFNKLTNTLALEDLVARSYCEPVLIFKHSDACGISSRAYSE
                     MATLDRPIALVTVQTERAVSTEIERRFGVAHETPQVLILRDGKVVWSASHGQVKAEAV
                     EAAVLSVPPALAYG"
     gene            3921..4241
                     /locus_tag="VHD88_01215"
     CDS             3921..4241
                     /locus_tag="VHD88_01215"
                     /inference="COORDINATES: protein motif:HMM:NF017922.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF971 domain-containing protein"
                     /protein_id="HVS20430.1"
                     /translation="MDFAQRREAIEPREISQESNDKLRITWADGRVCEYEAATLRRAC
                     PCAQCVNEWTGQRTLKPEAVLSEVEIGDLSIVGRYALNFRWSDGHETGIYSFQYLRDL
                     CEQE"
     gene            4241..4636
                     /locus_tag="VHD88_01220"
     CDS             4241..4636
                     /locus_tag="VHD88_01220"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HVS20431.1"
                     /translation="MTRTRRILIVGNDDGRRAAHRALDRVGFDVVAAANHAEAHRSLL
                     GSRFDLVVTEVGEPASDGVEFIKRIRATPQLADMLILVIAEWGAGKATLALSQGADGY
                     EPKPVDANRLITSIERLLRKEAAAASQGQ"
     gene            4633..4899
                     /locus_tag="VHD88_01225"
     CDS             4633..4899
                     /locus_tag="VHD88_01225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20432.1"
                     /translation="MKESDYFNEKQEVKRATFTCPHCRDRGEYDVRWLRRTKKAGPPR
                     GGNEGDRMRFQKSRDYMVRIDDMLACRSCRKRFDIPSSQSVVFL"
     gene            5057..5278
                     /locus_tag="VHD88_01230"
     CDS             5057..5278
                     /locus_tag="VHD88_01230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20433.1"
                     /translation="MSEKKVIKVVKRAERSNRKAKSAKPARDAARKAATDMVATVTNW
                     VNEFQQKQSDETTKAISNLMRARQQPNEA"
     gene            5432..5614
                     /locus_tag="VHD88_01235"
     CDS             5432..5614
                     /locus_tag="VHD88_01235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20434.1"
                     /translation="MKSSRSKSRKRAKKSIVDSIRRPLAPPGHPMTRAKPDVKARPAG
                     RKAKHKQRPGELEMEE"
     gene            5697..6221
                     /locus_tag="VHD88_01240"
     CDS             5697..6221
                     /locus_tag="VHD88_01240"
                     /inference="COORDINATES: protein motif:HMM:NF019241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1572 family protein"
                     /protein_id="HVS20435.1"
                     /translation="MSELGKAFIAQSRYHLAEDYLPKIERCLALLDDKQIWWRANPES
                     NSIGNLLLHLGGNVRQWIVCGLGDATDGRDRDSEFAQRDMIPRAELLRRLKQTLREAD
                     ATLAKFDPEKLLEQKRIQGFDGSALDAILHVVEHFSMHTGQIILLAKMFAEVDIEFYD
                     FSGANPVLAWKREL"
     gene            6325..6603
                     /locus_tag="VHD88_01245"
     CDS             6325..6603
                     /locus_tag="VHD88_01245"
                     /inference="COORDINATES: protein motif:HMM:NF024644.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HVS20436.1"
                     /translation="MTYIVAEPCVNCRYTDCALVCPVDAFHLDDDMLVIHPETCIDCD
                     VCVPECPVEAIFAEDKLPAEWASFTQINADRALSGLPTINVRLDPLCQ"
     gene            6774..7079
                     /locus_tag="VHD88_01250"
     CDS             6774..7079
                     /locus_tag="VHD88_01250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20437.1"
                     /translation="MRKSTKRLVAGVALTAGAVGAIGAVLMKKNSGSGRDRRREKSRS
                     NDAWARPGMKVIFRAELMPGREGSERTFHVAKLLPSGRVLLDRVAGEHMEKEFEPIR"
     gene            complement(7088..7864)
                     /locus_tag="VHD88_01255"
     CDS             complement(7088..7864)
                     /locus_tag="VHD88_01255"
                     /EC_number="3.1.4.17"
                     /inference="COORDINATES: protein motif:HMM:NF014199.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004114 - 3',5'-cyclic-nucleotide
                     phosphodiesterase activity [Evidence IEA];
                     GO_function: GO:0008081 - phosphoric diester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3',5'-cyclic-nucleotide phosphodiesterase"
                     /protein_id="HVS20438.1"
                     /translation="MNIQLLPSSFDADGRASQAQRLTCFLIDDRVAVDAGSIGIALTE
                     SQRCTVRDVIVTHPHMDHIASLPIFVDDLFADLDQPIRIHATQEVIDLLERDVFNDNV
                     YPRFAELKNERGRVMQYVPFGIDKEFSVAHLRVTAVAVNHIVPTVGLLVRDEKSTVAF
                     SSDTAETEDFWKLVNRAPHLDALFIEASFPNSMRKLAEVSKHLTPAMLSKELGKLSHN
                     GIDILAVHLKPAYRQIVTEELAALGMDNLSVMEAGRVYEW"
     gene            complement(7962..9143)
                     /locus_tag="VHD88_01260"
     CDS             complement(7962..9143)
                     /locus_tag="VHD88_01260"
                     /inference="COORDINATES: protein motif:HMM:NF024760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PrsW family intramembrane metalloprotease"
                     /protein_id="HVS20439.1"
                     /translation="MMNPNYTPSPPARPMMVRSSGHQSVFKILLAVFAAMIAALLGLI
                     VLLLIGAETGPAEMIIGLIFASLPVPVYVMLLLWIDRYESEPLWMLATAFFWGALVAV
                     FIAFVLNTANQIIVASATNNARIGESFGAVISAPIVEESSKAFILLVLFLWKKDEFDG
                     IVDGIVYAGMVGLGFAMTENVAYYGRAVHGGAGSLTFIFILRGMAAPFSHPLFTSMTG
                     IGLGWARQSDNGFVKITMPVLGFMLAILMHMIWNGSATYGGGAGFFVAYFVIMGPAFI
                     VTMMVIFFSLRREGRIVRQFLYPDYQNGLFAQQEYEKLCSIRGRMGMSWSALTTRGFS
                     TWRTRMRCNQIASELAFHRSRVARGFGRDPQLAQERENAYLLTLQELSRQLASGQRVG
                     R"
     gene            complement(9285..10058)
                     /locus_tag="VHD88_01265"
     CDS             complement(9285..10058)
                     /locus_tag="VHD88_01265"
                     /EC_number="1.1.1.47"
                     /inference="COORDINATES: protein motif:HMM:NF005559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose 1-dehydrogenase"
                     /protein_id="HVS20440.1"
                     /translation="MAKDSSDRVVLVTGATSGIGRATARRFSESSASVVAVGRNQAAL
                     REVENEIKEAGGEPLTITADVTKEGGARRVIEDALGKFGRLDVLVNAAGHISTGSIED
                     TSLAAWDAMMNVNVRAVFQLMQLAAPHLIETKGNIVNVSSVTGLRSFPGVLAYCVSKA
                     GVDQLTRCAALDLAPKGVRVNAVNPGVVVTEIHKRGGMSEEDYAQFLERSKTTHPIGR
                     VGDPREIAELVFYLASEKAGWITGATYQIDGGRALTCAR"
BASE COUNT         2328 a         2890 c         2986 g         2120 t
ORIGIN      
        1 tgcaaacaaa cattttcaga atgcgcttga agccggcagc ggcgcgttgc ccgtggttgc
       61 caagctgggc cagacgcgtc gcttccgcgc ggctgcgcgc actagcctcg gtgacgtggc
      121 gttgcgtcaa gcgcgctaca aagatgccgc taaacttttc accgatgccg cgaccggcgc
      181 gcaaaaagac aatcgtctcg atctggtgtg gccggcaaag cgtggtttgg gtcggagtct
      241 ttggctgcaa gccgcgcaag agaaagacag caaggccggg aagttgcgcg aggatgcgct
      301 ggctgcatat cgcgacgcgc tgaaaacgat cgaaacgatt cgcgcaggca gcttgcgtgc
      361 tgacgaatcg cgcacgacgt ttctcgccac gacgaaagac gtttacgacg aagcgtccag
      421 cgcgctggct gagatggctt tgttgagttc atcttccggc ggctcgttga tcggcaaggc
      481 tctggactac gccgctgaat ctttcaaagt ttcggaagca ggtcgcgctc ggtcgctgct
      541 cgacatgctc ggcgaagtga acgcgcaaat caccgaaggt gtgccgccgg atttgctgaa
      601 gcgcaagcag gacaacctcg atcgccagca ggcgattgcg gaacagctaa cgggcatcag
      661 tctttccggc gaccggaaag aaaagccatc gaagctggaa gaccaactcg accagctgca
      721 aacagaattt gacgatattg agaatcagat tcgcaccgcg agtccacgtt acgcggcgct
      781 caccgcggcg cagccgctcg cgctggccga tgtccagcaa acggttctgg acgacaacac
      841 gattttgctg gaatacagtc tcggaacgga cagttcgtat ttatttgcgg tgacgcgcgc
      901 gggtgtttcg cttttcaagc taccggcgcg accagaagtg gacaaactcg cgaccgattt
      961 ccgcgcccag ttgattccgc cgaagctgca gcggcgcatc gtcggcatcg acgtagctgc
     1021 cgatcaggcg cgtggtctcg gcttggtcca gggtccatcg gaaaatctca acgcattcgt
     1081 cgctgcttcg aatgcgctct acaaagcggt ggtcgaaccg gcgagcagct tgatcgccga
     1141 caagcgactg ctcgtcgtcg cggatggcgc gttgaattac gtgccgttcg aagcgctggt
     1201 caagaccgcc gacggctccg attatgcctc gctcagctat ctcgtcaaga caaacgaaat
     1261 tgtttacgcg ccgtcagctt cagtcatcgc cgcgattcgc cagcaaggaa gcaaaccgtc
     1321 gggaaagaat ctgctggtcg ttgccgatcc tgttttcagt cctaccgatc cgcgtttgaa
     1381 aggcggcgcc gcaacgcaaa cttccggcga agcgcgcggc ctcggtctcg gactggaaag
     1441 cgcggtcagc gatgttgctg ggccgtccga acccgcaggc ggattgcagc ttgcgcgtct
     1501 ccctggtacg cgcgtcgaag ccgaagagat cgcaaagata gcccgcgcgg cgggccgcca
     1561 acccgatctc tggactgatc taaatgccag cgaagacaac ctacgcagcc gcgacgtgac
     1621 gaactatcgc gtcgtgcaca tcgcaacgca cggcctgttg aatgccgagc ggccgcagtt
     1681 caccggagtt gtgctttcgc tcgtgggaaa caaatcaagt gatggctttc tgcgcacaga
     1741 cgagattttc aacttgcgga tgggtgcgcc tttggtcatg ctttctgcat gcgagactgg
     1801 actgggcaaa gagaagcgcg gcgaaggagt cattggtttg acgcgcgcgt tcatgtacgc
     1861 cggcgcgccg acggtcggcg taagcttgtg gtcagttgcc gacaaatcga ctgccgaatt
     1921 gatggcggat ttttatcagc gattgcttaa cacctccaaa ccctcgtcgg catcgagcgc
     1981 gatgcgcgat gcgcagctcg cgatgatctc ggggaagaaa tacagcgcgc cgttttactg
     2041 ggcgccgttc gtgctcgtgg gagagtggcg gtaaatagcg tacggtattc gcggcattga
     2101 ctaaacactc cgtgctgaag caaggtcttc aggtgaagta tatgcgttca tacccggcga
     2161 gcgttgtcgc gctcgccctt ttcgttgttg gctcctcatt tttctgttaa cgctttgccg
     2221 acgcttctaa cggcccaagc gcccagccga tctcttctga aaaccagaac tcaaacgcgg
     2281 cgcgggcggc acttgaagag ggtaaagcac agtttgagcc gcttcaactc gtacgcggcg
     2341 ctgggtccgc tggaacaatc gctccggttg tatcagcaag ctaacgatca gaacggcatc
     2401 ggcgcggccg gcgatgcgct cggcgatttg tacgagcggg aaggccagca cgcgacggcg
     2461 cagaattatt atcagcaagc gcgcaacgcc tttcttgcta ataaagaaac cgagaacgcc
     2521 gatctggtgc tcgcaaagat gggcgaaact tatttggcag ccgatgacgc agacaaggcg
     2581 cgtgcgatgt ttgcgtcatt cagtcgagcg ggagattctg agcccgccgc cggcctgatt
     2641 gaactatctg actacgacaa acgaagttgt gtacgcgccg tcggcttcag tgatcgccgc
     2701 aattcggcaa agaagaaagg tgtcagccgg aacgaacttg ctcgtggttg cggatccagt
     2761 gtttgctcca aacgatccgc gtttgaaagg cgctggcggc agtcaaactt cgggcgagac
     2821 acgcggtctc ggacttggaa gcgcagtcaa cgatgttgcg ggcccagaac ggaagtggat
     2881 tgcagttcgc gcgcctcagt ggaacgcgta ccgaagccga aggaatcgcg aaggttgcgc
     2941 gaaccggcgg cagccaatcc gacctttggc tcgatcttaa cgccagcgaa gacaacgtgc
     3001 gcaatcgcga cgtggccggc tatcgcgtcg tgcacatcgc gacacacggt ttgctggacg
     3061 cggagcgccc gcagttcagt ggcgtcgtgc tgtctttggt gggcaacaaa accggcgacg
     3121 gttttctgcg cactgacgaa gtctttaatc tgaagctggg cgcgcctttg gtgatgctct
     3181 ctgcctgtga aactggattg ggaaaagaga aacgcggcga aggcgtgatc ggtttgacgc
     3241 gcgcattcat gtacgccggc gcgccaacgg tcggcgttag cttgtggtcc gtggctgaca
     3301 aatcaaccgc cgaattgatg acggatttct accagcgact gctgggatct tccaccgcca
     3361 actctccttc ggtcgctttg cgcgaagcgc aattggcaat gatcaatggc aagaagtaca
     3421 gcgcaccttt ctattgggca ccgtttgtgc tggtgggcga gtggcgttga tttcttcaat
     3481 cgcgccgagc agcacagttg tgacaactgg ggtcgtgagc taatatcaag tcaatccgct
     3541 ccgcaggccc gttaatgcag aatcatttca acaagcttac caacactctc gctctcgaag
     3601 atttggtcgc gcgctcgtac tgcgaacccg tcctgatttt caaacacagc gacgcctgcg
     3661 ggattagctc gcgggcctat tcggaaatgg cgacacttga tcggcccatt gcccttgtca
     3721 ccgtccagac ggagcgcgcg gtttcaaccg aaatcgaaag gcgcttcggc gtcgcgcacg
     3781 agacgccgca ggtgctgatt cttcgcgatg gcaaagtcgt ctggtctgct tcgcacgggc
     3841 aagtgaaagc tgaagccgtg gaagcggcgg ttttgtcagt accacctgca ttagcgtacg
     3901 ggtaagcaaa cggcagccgc atggactttg cacaaagacg tgaagcgatc gagccgcgcg
     3961 agatttcgca ggaaagcaat gacaagctgc ggatcacctg ggcggacggg cgcgtgtgcg
     4021 agtacgaggc ggcaacgctg cggcgcgctt gtccatgcgc gcaatgcgtc aacgaatgga
     4081 cggggcagcg aacgctgaaa ccggaggccg tgttgagcga agttgagatt ggcgacctct
     4141 cgatcgtcgg tcgctacgcg ctgaactttc gctggagtga cggacacgaa accggcattt
     4201 acagttttca gtatttgcgc gatctttgcg aacaggaata atgactcgaa cgaggcgaat
     4261 cctaatcgtc ggcaacgatg acggacgacg cgcggcgcat cgtgcgctcg atcgcgttgg
     4321 cttcgatgtt gtcgccgctg cgaatcacgc ggaagcccac cgcagtttgc tcggctcgcg
     4381 ctttgatttg gtcgtcacgg aggttggcga accggcgtcg gatggagtcg aattcatcaa
     4441 acgcattcgc gcaacaccgc agttagctga tatgctgatt ctggtaatcg ccgaatgggg
     4501 cgcgggcaaa gcaacgttgg cgctgtcgca aggcgcggac ggctacgagc caaagccggt
     4561 tgacgcaaac cgactgatta cttctattga aagattgctg cgcaaagaag cggcagcggc
     4621 aagtcaagga caatgaagga aagtgattat ttcaacgaga agcaggaagt gaaacgcgcg
     4681 acgtttactt gcccgcattg ccgcgaccgt ggcgagtatg acgtgcgctg gctgcgtcgc
     4741 acgaagaaag ctgggccgcc gcgcggcggt aacgagggtg atcgcatgcg ttttcaaaag
     4801 tcgcgcgact acatggttcg cattgatgat atgctggcct gccggagttg ccgcaaacgt
     4861 ttcgacattc ccagttcaca gtccgttgtg ttcctctaga cgcttcccaa gtacagtgca
     4921 acgcctttct gcaaccaaaa cgaactccgg tgcgtctaac acattacttt cccggaaaac
     4981 aagcggataa agacggaact ttcacttaga gatttcgtta ttctaattca caaatcaacc
     5041 tgctccccga aagattatgt ctgagaaaaa agtaataaaa gtcgttaagc gcgcagagcg
     5101 cagtaaccgc aaggccaaga gcgcgaagcc cgcgcgcgac gccgcgcgca aggccgcgac
     5161 cgatatggtc gcgacggtca cgaattgggt caatgagttt cagcaaaagc agagcgacga
     5221 aaccaccaaa gccatcagca acttgatgcg cgctcgtcag caaccgaacg aggcgtgatc
     5281 aactcgctcc gatccctgcg tcgctcacgt tccaaaacaa tctttcttta atccgcagct
     5341 agcgcttctt gtctgcgcgt tttagaaaac agatttgaca gtcgcgaccg gcggcgctag
     5401 catcgccttg gaatcactcc gacaaactgc aatgaaatct tcacgctcga agagccgaaa
     5461 gcgcgcgaag aaatcgatcg ttgattctat tcgccggccg ttggcgcctc cgggccatcc
     5521 aatgacccgg gccaaacccg acgtgaaagc gcgccccgcg ggacgcaaag ccaaacacaa
     5581 acagcgtccg ggagaactgg agatggagga atagtgtcag aagcccgcgc gtaagcaagg
     5641 gcttgctcgc taatgaatca tgccctccct gacagtcagg cttctgacac gaaatcatga
     5701 gtgaactcgg caaagccttt atcgcccaat cacgttacca cttggctgaa gactacttgc
     5761 caaagatcga gcgctgtctg gcgctgctcg acgacaaaca aatctggtgg cgcgcaaatc
     5821 ccgaatcgaa cagcattgga aatctgctgc tgcatctggg cggcaacgtg cgccagtgga
     5881 tcgtttgcgg cctcggcgac gcgaccgacg gtcgggatcg cgattccgaa tttgcgcagc
     5941 gcgacatgat tccgcgcgct gaattgcttc gtaggttgaa acagacgctt cgcgaagcgg
     6001 atgcgacgct ggcgaagttc gatccggaaa agttgctcga gcaaaagagg atccagggct
     6061 tcgacggatc ggcactggat gcaattctgc atgtcgtcga acatttctcg atgcatactg
     6121 ggcaaataat tctgctcgcg aagatgttcg ccgaagtcga tatcgaattc tatgatttct
     6181 ctggcgcaaa tcctgtgctc gcctggaaac gcgaactgta ataaagtgga atagacttcg
     6241 gtctgttaag tgagttgcgg cacagactaa agtctatgct aaattagacg caataactga
     6301 atcacacttg gaggctgatt tcggatgact tacatcgttg cggaaccctg cgttaattgc
     6361 cgctacactg attgtgcttt ggtttgcccg gtcgacgctt ttcatctcga cgacgacatg
     6421 ctggtgattc atcccgaaac ctgcatcgat tgtgacgtgt gcgttcccga atgtccggtc
     6481 gaggctattt ttgccgaaga caagctgcct gcggaatggg cgagcttcac gcaaatcaac
     6541 gccgatcgcg cgttgagcgg cttgcccacg atcaatgtaa ggctcgatcc tttatgccag
     6601 tgatttgggc gggaccgaat gcgattcaac agggcgcgcc ggccgtggcc aaccaaagcg
     6661 gctgtcgcgc cctcttagtg tttctgcaga acacgccttg cattgggagt ctcggatttc
     6721 agatctcaaa tcgtatttgt aaggatttga aatctgagat ttgaaaacag cgaatgagaa
     6781 agagcacgaa gcgcttagtg gcaggagtag cgttgactgc cggagcggtg ggcgcgattg
     6841 gagccgtatt gatgaaaaag aacagcggct ctggccgtga tcgccgacgc gagaaatcgc
     6901 gatccaatga cgcctgggca cggcccggaa tgaaagtcat ctttcgcgct gagttgatgc
     6961 cgggacgcga aggttcagag cgaacctttc acgttgcgaa gctcttgccc agcggacgcg
     7021 tgctgcttga ccgagttgca ggtgagcata tggagaaaga atttgagccg attaggtaag
     7081 ctgccagtta ccactcatag acccgccccg cttccatcac actcagatta tccattccca
     7141 gcgccgccaa ttcttcagtc acgatttggc gataagccgg cttcaagtgt acggcgagaa
     7201 tgtctatgcc gttgtggctt agcttgccaa gttctttgct cagcattgcg ggcgtgaggt
     7261 gctttgatac ttcggcgagt ttacgcatcg agttcggaaa cgaagcttcg atgaacaacg
     7321 cgtcgaggtg cggcgcgcga ttcaccaact tccagaagtc ttcggtttcg gccgtgtcgg
     7381 aactgaacgc gaccgttgat ttttcatccc tgaccagcaa ccccaccgtc ggcacgatgt
     7441 gattgactgc aacggcagtt acgcgcaagt gagccacgga gaattctttg tcgatgccaa
     7501 acggcacgta ctgcatcacg cgtccgcgtt cgttcttcaa ctcagcaaag cgcggataca
     7561 cgttgtcgtt gaaaacgtcg cgctccagca gatcgatcac ttcctgcgtc gcatgaatgc
     7621 gaatgggctg gtcgaggtcg gcaaaaagat cgtcaacaaa gatcggcagg ctggcgatgt
     7681 gatccatgtg cggatgcgtc acgatgacgt cgcgcacggt gcagcgctgc gactccgtca
     7741 acgcgatgcc gatgctgccg gcatcgacgg cgacgcgatc gtcaatgaga aagcacgtca
     7801 gccgctgcgc ctgactggca cgcccgtcgg catcgaacga gcttggtaag agttggatgt
     7861 tcaagtgtcg ctgctgttgg agccgggccc agctaaagcg ccccaagtat aagccaacct
     7921 cagtcaaagc cgcgagagtt ttccgcgagc cgaaccaaga actagcggcc aactctttgg
     7981 ccggaagcaa gttgccggga caattcctgc agcgtgagca ggtacgcgtt ctcacgctcc
     8041 tgcgccaact gcggatcgcg tccgaacccg cgcgccacgc gactgcgatg aaaagcgagt
     8101 tcgctggcaa tctgattaca tcgcatgcgc gtgcgccagg ttgaaaagcc gcgcgtcgtc
     8161 agcgcgctcc acgacattcc catgcggccg cgaatgctgc aaagcttctc gtattcctgc
     8221 tgagcgaaca aaccgttttg gtaatcggga taaagaaact ggcgcacgat gcggccttcg
     8281 cggcgcagtg aaaaaaagat caccatcatt gtcacgataa aagccggacc catgatgacg
     8341 aagtacgcga caaagaatcc cgccccgccg ccataggtcg ctgatccatt ccaaatcata
     8401 tgcatcagga tcgcgagcat gaaacccagc accggcattg tgattttcac aaagccattg
     8461 tcagactgtc gcgcccagcc gagtccgatg cccgtcatgc tggtgaacaa tggatgtgaa
     8521 aaaggcgccg ccattccgcg caagatgaag atgaaagtta agctgcccgc gccgccatgc
     8581 acggctctgc cgtagtaggc aacgttttcc gtcatcgcga aaccgaggcc gaccatgccc
     8641 gcgtaaacta ttccgtcaac gatgccgtca aactcgtcct tcttccagag gaacagaact
     8701 aagagaatga aagccttgga gctctcttcg acgattggag cagagatcac cgcgccaaaa
     8761 ctctcgccga tgcgcgcatt gtttgtggcc gaggcgacga tgatttggtt cgcggtgttt
     8821 agaacgaacg caatgaacac ggcgaccaac gcgccccaga aaaaagccgt ggccagcatc
     8881 catagcggct cagattcgta acgatcgatc cacaacaaga gcatcacata aaccggcacg
     8941 ggcaacgaag caaaaatcaa tccgatgatc atctcggccg gcccggtttc cgcgccgata
     9001 agcagcaata cgatcagccc gagcagggcg gcgatcatcg ctgcgaatac cgcaagaagt
     9061 attttgaaga cgctctggtg accggaggag cgaaccatca tcggacgcgc cggcgggctc
     9121 ggggtgtagt ttgggttcat catcttgcta tcaacgaaca agctggaacg cgcgaagtat
     9181 atcgagattt gaagcaagcg accagagtgt cagaagcccg accgtaaggg agggctctgg
     9241 aagggatgcg acttgccctc ccttacggtc gggcttctaa caggctagcg cgcgcacgtc
     9301 aacgcgcggc cgccgtcgat ctgataagtg gcgccggtta tccatcccgc tttctcagaa
     9361 gcaagataga aaaccaactc ggcgatctcg cgaggatcgc ccacgcgtcc gatcggatgc
     9421 gtagtttttg atcgttccaa aaactgtgca tagtcttctt cgctcatgcc gccgcgctta
     9481 tgaatctcag tgacgacgac accgggattc acggcgttca cgcgcacgcc tttgggcgcc
     9541 agatcgagcg cggcgcaacg tgtcaactga tcgactccgg ccttggacac gcaataggcc
     9601 agcacgccgg ggaacgaacg gagcccggtg acgcttgaga cattgacgat gttgcccttc
     9661 gtttctatca ggtgcggcgc ggccagttgc atcaactgaa aaaccgcgcg cacgttgacg
     9721 ttcatcatcg cgtcccacgc cgccagcgag gtatcttcga tcgagccggt ggagatgtgt
     9781 ccggcggcgt tcacgagcac atcgaggcgg ccaaacttgc cgagcgcatc ttcaatcacg
     9841 cgtcgtgctc caccttcttt ggtaacgtcg gctgtgattg ttagtggctc gccgcccgct
     9901 tctttgatct cattctcaac ttcgcggagc gcggcttgat ttcgcccaac ggcaaccacg
     9961 cttgccgagc tttcactgaa ccggcgcgcc gtggctcggc ctatgcccga tgttgcaccc
    10021 gtcaccaata cgactctgtc tgaagaatcc ttcgccatcc gaatgtcctt tctttggccg
    10081 cctatattga catacgccgc tcgggattga ctataattcc gcgcgcggga cgcggttgcg
    10141 cgaagcggct agtttgtttt ctcgtgagac tctgaagtga cccgactacg ctagtacata
    10201 gttccctcac ccttttgact ttgggcagat aaacttttca ttcgatggaa tcgcgagatc
    10261 acaacctcta ccgatcgggc cagccgcgag gctcgcgcga ctcttcgtcg cctcatcgcc
    10321 gtcc
//
LOCUS       DASZZE010000067         2533 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_18031, whole genome shotgun sequence.
ACCESSION   DASZZE010000067 DASZZE010000000
VERSION     DASZZE010000067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2533)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2533)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2533
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18031"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..434)
                     /gene="rimM"
                     /locus_tag="VHD88_01270"
     CDS             complement(<1..434)
                     /gene="rimM"
                     /locus_tag="VHD88_01270"
                     /inference="COORDINATES: protein motif:HMM:TIGR02273.1"
                     /note="Essential for efficient processing of 16S rRNA;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HVS20441.1"
                     /translation="MIADELIAVARVVKVRGLRGELVADLLTDFPDRFDNLQSLIAVA
                     PDGSKRSLQIEEHWLYRDRIVFKFAGYDSIDVAKELVGYELAVPASERIELPQDQFYD
                     WELAGCRVETIDAKAIGTVREVMRTGGVELLVVESDVGREFL"
     gene            complement(436..669)
                     /locus_tag="VHD88_01275"
     CDS             complement(436..669)
                     /locus_tag="VHD88_01275"
                     /inference="COORDINATES: protein motif:HMM:NF024483.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HVS20442.1"
                     /translation="MMRDTVELIVKALVDDAEAVDVRAIEREGTTRIEVRVAQSDMGK
                     VIGKQGRTVRALRSLVYAAGLKQHRRFVLDVVE"
     gene            complement(724..996)
                     /gene="rpsP"
                     /locus_tag="VHD88_01280"
     CDS             complement(724..996)
                     /gene="rpsP"
                     /locus_tag="VHD88_01280"
                     /inference="COORDINATES: protein motif:HMM:TIGR00002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HVS20443.1"
                     /translation="MLAIRLMRTGAKKRPSYRIVVKEKQSKRDGACLENLGTYNPTRQ
                     PAEIKLKAERVRYWIEKGAQPTDTVRRLIKQAAKAQAIAESEVVAA"
     gene            complement(1065..2513)
                     /gene="ffh"
                     /locus_tag="VHD88_01285"
     CDS             complement(1065..2513)
                     /gene="ffh"
                     /locus_tag="VHD88_01285"
                     /inference="COORDINATES: protein motif:HMM:TIGR00959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0048501 - signal recognition particle,
                     plasma membrane targeting [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005048 - signal sequence binding
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HVS20444.1"
                     /translation="MFESLSDKLKRTLKNLRGEGVLTKEHVAAALREIRLALLEADVN
                     YKVAKDFIASVKEKAEGQQVWLELKPSEQVIKIVFDELVDLLGGQSSRLVFTKAIPNV
                     VMIVGLQGSGKTTSTGKIARWLAQNQQRKPLLLSTDVYRPAAREQLKVIAKATGQSIF
                     EKPETNDPLELTREALKQARDVGYDTLLIDTAGRLHIDDELMEELVTIKSETHPVEIL
                     FVADAMTGQDAVRSAEEFHRRIGITGVVLTKMDGDARGGAALSIKQVIGQPVKFVGVG
                     EKYDALEPFYPDRVAQRILGMGDVLSLIEEVQSKVDQDEAEAQLKKLQKNQFTLDDFR
                     SQLRQVKKLGSFSKILKLLPDQLLGGVGMPELTDEQSELMEKELKRTEAIIDSMTRAE
                     RVNHMILNANRRRRIARGSGTTVAQVNSLIKQYTEMRRMMQGMFSGGGLRGKMMRRMA
                     GISGMEGDGDPMMAGLPAGPSRKKKKKKKRRR"
BASE COUNT          521 a          799 c          634 g          579 t
ORIGIN      
        1 atcaggaatt cacggccaac atcgctctca acgacgagca gctcgacgcc tccggtgcgc
       61 atcacttcgc gaaccgtgcc tatcgccttt gcgtcaatcg tctcaacacg acagccggcc
      121 aactcccagt cataaaactg atcctgggga agctcgatgc gctcgctcgc cggaacagcg
      181 agttcatagc cgacgagttc cttcgccaca tcgatcgagt cgtagccggc aaatttgaaa
      241 acaatgcgat cgcgataaag ccagtgctct tcaatttgca aagatcgttt acttccgtcc
      301 ggcgccaccg caatcaacga ttgaagattg tcaaagcggt ccggaaaatc cgttaaaaga
      361 tcggcaacca attccccgcg cagccctctg accttgacca cgcgcgcgac tgcgatcaac
      421 tcatcggcga tcacttcact caacgacgtc gagcacgaac cggcgatgtt gcttcaaacc
      481 ggcggcgtaa accagcgagc gcaaagcgcg caccgtccgg ccctgtttgc cgattacttt
      541 tcccatatcc gattgcgcga cgcgcacctc gatgcgcgtg gttccttcgc gctcaatcgc
      601 gcgcacgtca accgcttccg catcatcgac gagagctttg acgatcagtt cgacggtgtc
      661 gcgcatcatc cagtccaggg tcgaaagctt cgagaaagaa agcggacaag tccgctcggc
      721 gaactacgct gccacaactt ccgattcggc gatcgcctgc gctttcgcgg cttgcttgat
      781 caagcggcgc acggtatcgg taggctgcgc gcctttctcg atccaatacc gaacgcgttc
      841 ggccttgagc ttaatctccg ccggttggcg cgtgggattg taagtaccca gattctccag
      901 acacgcgccg tcgcgtttgg attgcttttc tttgaccaca atgcggtacg acgggcgctt
      961 cttcgcgccg gttcgcatca atctgattgc taacaagtaa tttccctcca gctattcgtc
     1021 ggggaggtag cccgactcta aacgattatt tgtcgccacg aacgctatcg tcgtcgcttc
     1081 tttttcttct tcttctttcg cgatggaccg gcaggcaaac cagccatcat cggatcgccg
     1141 tcgccttcca tccccgaaat gccggccatg cggcgcatca tcttgccgcg caagccaccg
     1201 ccgctgaaca tcccttgcat catgcgacgc atttcggtgt actgcttgat tagcgagttc
     1261 acctgcgcca ccgttgtgcc tgagccgcgc gcgattcgcc ggcggcgatt cgcgtttaag
     1321 atcatatgat tcacgcgctc cgcgcgcgtc atcgaatcaa tgatcgcctc agtacgcttc
     1381 agttctttct ccatcaactc cgactgctcg tcagtcaatt cgggcatgcc gacgccgccg
     1441 agcagttgat ccggcagcag cttcagaatc tttgagaaag aaccaagctt cttgacttgc
     1501 ctgagttgcg aacgaaaatc atcgagcgtg aactgattct tttgcagctt cttgagctgc
     1561 gcctcggctt cgtcctgatc gactttcgac tgaacttctt cgatcagcga aagcacatca
     1621 cccatgccga ggatgcgctg ggccacgcga tcgggataga agggctcaag cgcgtcgtac
     1681 ttctcgccga cgccgacgaa ttttacgggc tggccgataa cctgcttaat cgataaggcc
     1741 gcgccgccgc gcgcatcgcc gtccatcttt gtcagcacca cgccggtaat gccaatgcgc
     1801 cgatgaaact cttcagccga tcgcaccgcg tcctgtccgg tcatcgcatc agcgacgaaa
     1861 agaatctcga ccggatgcgt ttcgctcttg atcgtaacca gctcttccat caactcgtcg
     1921 tcaatgtgca aacgcccggc cgtatcgatc aacagagtgt cataaccaac gtcgcgagcc
     1981 tgcttcaacg cttcgcgcgt cagctccagc ggatcgttcg tctcaggctt ttcaaagatc
     2041 gactggccgg ttgctttcgc gatgaccttt aactgttctc gcgccgccgg ccggtaaacg
     2101 tcggtggaaa gcaacagcgg cttacgctgt tgattctgcg ccagccaacg cgcgattttt
     2161 cccgtcgagg tcgtcttgcc tgaaccttgc aggccgacga tcatcacgac attcggtatc
     2221 gcttttgtaa agaccaggcg cgaagattgc ccgccaagca gatcgactaa ttcatcgaag
     2281 acgatcttga tgacttgttc ggacggcttc agttctagcc aaacctgctg gccttcggct
     2341 ttctccttga ccgacgcgat gaagtctttc gcgactttgt aattgacgtc cgcttcgagc
     2401 agcgccaaac gaatctcgcg cagcgccgcg gcgacgtgtt ccttcgtcag gacgccttcg
     2461 ccgcgcagat tcttcagagt ccgcttcagt ttgtcggaaa gagactcgaa catacattag
     2521 acggcgattc cgg
//
LOCUS       DASZZE010000068         3932 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_181615, whole genome shotgun sequence.
ACCESSION   DASZZE010000068 DASZZE010000000
VERSION     DASZZE010000068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3932)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3932)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3932
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_181615"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1454)
                     /locus_tag="VHD88_01290"
     CDS             complement(<1..1454)
                     /locus_tag="VHD88_01290"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HVS20445.1"
                     /translation="MKKIVESYRQKLTSEEGWVLKRGAHLRIALCYPNVYAIGMANLG
                     FQAMYELFNRIPEVSCERAFLPDTNEMREYERARTALLSIESQTRVRDFNVIAFSISF
                     ETDYMHMARMLRLSGVPVWSKDRTARDPLIVMGGAASFLNPEPIAEFTDVIGVGEGEI
                     LGPKLVDVLLENDSKEEVLLALARQGRGFYVPSLYSVSYNEDETVEAYTPLADGVPTR
                     VGRAVSAENPKEGSLRRAIRRQQFDVAKQLRRDEVFAPSTSIFAPQAEMGDRFLIEIS
                     RGCSQGCRFCWAGYNYWPPRVVPARDILAKAGAWRAKTDKIGLVSTAVCDHPEISEIL
                     QGLRAMEYRISVSSLRLDQISDELLDALVESRDRQIAVAPETGSDRLRRVINKNLTND
                     EIVDICGAVFDRGMLTVKLYLMVGLPTETDEDLAEMITLVERIKDRMLEAGRRFGRAG
                     KIIPSLNGFVPKPNTPFQWEPICSEKELKRRLKWV"
     gene            complement(1471..3201)
                     /gene="rpoD"
                     /locus_tag="VHD88_01295"
     CDS             complement(1471..3201)
                     /gene="rpoD"
                     /locus_tag="VHD88_01295"
                     /inference="COORDINATES: protein motif:HMM:NF004208.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HVS20446.1"
                     /translation="MRREEKDRDDVMDRLLQLGGDKKFLSYDDLNRELPENVVSPDDI
                     EDVLQKLDASNIHVADSDERLIEQAATIATDDEESGDEELELDLSAGALEKTNDPVRL
                     YLREMGVVPLLTREGEVAIAKRIERGQIKTQKAIARSPIAVGELQKIGEELAAGRLNI
                     REVVTFSEQAELAGEEDKAEEYRDWTIEGIENIRKLFKNALKEWVKLRAEQKITRGKK
                     TKKLLRLRRKVARLRIEIADEIGRLNMTERSRQRLINSIRNVQKEVRSAEREIDTYTD
                     RLSKKRLKADDQKAYKKHVSNGRKRLQTVEQEHHISPVEVKRSLQSIVTGEHHTGQAK
                     RELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEWRRGYKFSTYATWW
                     IRQAITRAIADQARTIRIPVHMIETINKLIRTSRALVQELGREPTSEEIAKKMDIPVS
                     KVRKVLKIAQEPISLETPIGEEEDSHLGDFIEDKSILNPSDAVVASNLREITDEVLAT
                     LTPREEKVIKMRFGLGTTGSEHTLEEVGQHFAVTRERIRQIEAKALRKLRHPSRSRKL
                     KAFLETVQHN"
     gene            complement(3246..>3932)
                     /locus_tag="VHD88_01300"
     CDS             complement(3246..>3932)
                     /locus_tag="VHD88_01300"
                     /inference="COORDINATES: protein motif:HMM:NF021895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20447.1"
                     /translation="RDRNLHSPADKAAAVEETLPFVRAVRSRIQRREYFDIAMDALRV
                     QTDQQRELWQRIRIGASTDAAVVQELVKRSAQRTVAEERLLELLLASEELRKIVLPRL
                     ETGDYEDLATAPIFRALVKIDEKGSEVNFDSLTQETADESIVAELLPRLMVTEQLETF
                     DESLAAADSCLNALRLMKLNRRIDEMSSEIAEAERAGDSERRDRLSTEHLKLSKRRSE
                     FLPQARATDG"
BASE COUNT          796 a         1188 c         1010 g          938 t
ORIGIN      
        1 acccacttca aacgacgctt caactccttt tcgctgcaaa tcggttccca ctgaaacggc
       61 gtgttgggct tcggcacgaa accgttaagc gacggaatga tttttcctgc tcggccgaaa
      121 cgccgacctg cttccagcat gcgatctttg attcgctcaa ccagtgtgat catctcggca
      181 aggtcttcgt cggtctcagt cggaagccca accatcaaat aaagttttac ggtcagcatg
      241 ccgcgatcga acaccgcgcc gcagatatcc acaatctcgt cgttggtcag gttcttgttg
      301 atgacgcgac gcagacgatc ggatcccgtt tccggcgcaa cggcaatttg ccggtcgcga
      361 gattcgacca gcgcatccag cagttcgtcc gaaatctgat cgagtcgcaa gctggaaacc
      421 gagatgcgat actccatcgc gcgcaagccc tgcaggattt cgctgatctc cggatggtcg
      481 cagactgcag ttgaaacgag accgatcttg tccgtcttcg cgcgccatgc gcccgccttt
      541 gccaagatgt cgcgcgcggg tacaacgcgc ggcggccagt agttgtaacc ggcccagcag
      601 aaacggcaac cctgcgaaca tccgcgcgag atttcgatca gaaagcggtc gcccatctcg
      661 gcctgaggcg cgaaaatgct agtcgaaggc gcgaacactt catcgcgtct cagttgtttc
      721 gcgacgtcga attgctgacg ccgaatcgca cgacgcagac taccttcctt tggattctcg
      781 gctgagaccg cgcggccgac ccgagtcgga acgccatcgg cgagcggagt gtacgcttcc
      841 accgtctcgt cttcgttgta gctgacgctg taaagcgatg gcacgtagaa tccgcggcct
      901 tgtcgcgcca gcgccaacag aacttcttcc ttcgaatcgt tttccaggag cacatcaacc
      961 agcttcggcc cgaggatttc gccttcgccg acgccaatca catccgtgaa ctcggcgatc
     1021 ggttcgggat tcagaaacga tgccgctcca cccatcacga tcaaagggtc gcgcgctgtt
     1081 cgatccttcg accaaacggg aacgccgctc agacgcagca tccgcgccat gtgcatgtaa
     1141 tccgtctcga acgagatcga gaaggcaata acgttaaagt cgcgcacgcg agtttgcgat
     1201 tcaatcgaaa gcaacgcggt acgcgcgcgt tcgtactcgc gcatttcgtt tgtgtcaggc
     1261 aggaatgctc gctcacagga aacttcagga atgcgattga agagttcgta catcgcctga
     1321 aagccgaggt tcgccatgcc aatggcatag acgttcggat agcaaagcgc gatgcggagg
     1381 tgcgcgccac gctttagcac ccagccttct tcgctggtga gtttctggcg atagctttcg
     1441 acgatctttt tcacaatcag gctgtcgtga ctaattatgc tgaacggttt ccaggaaggc
     1501 cttcagcttt cgcgatcgcg agggatgacg cagcttgcgc agcgccttcg cttcaatttg
     1561 acgaatgcgt tcgcgcgtca cggcgaaatg ctgaccaact tcttcaagcg tgtgttccga
     1621 gccggtcgtg cccagaccaa agcgcatctt gatcactttt tcttcgcgcg gcgtcaaagt
     1681 cgcgagcact tcgtcggtta tttcacgcag gttcgaagcg accaccgcgt cggaaggatt
     1741 caagatcgac ttgtcttcga tgaaatcgcc gaggtgcgaa tcttcctctt cgccaatcgg
     1801 agtttcgagc gagattggtt cctgcgcaat cttaaggacc ttgcgcactt tcgaaaccgg
     1861 aatgtccatc ttcttcgcga tctcttcgct ggtcggttcg cggcccagct cctgcaccaa
     1921 cgcgcgcgaa gtgcgaatca gtttattgat cgtttcgatc atgtgcaccg gaatgcgaat
     1981 cgtgcgcgct tgatcggcga tggcgcgcgt gatcgcctga cgaatccacc acgttgcgta
     2041 agtcgaaaac ttgtagccgc gtcgccattc aaacttgtcc acggctttca tcaaaccgat
     2101 gttgccttcc tggatcagat caaggaactg caagccgcga ttagtatatt ttttcgcgat
     2161 cgaaacgacc aggcgcaggt tcgcttcgac cagttcgcgt ttcgcctggc cggtgtgatg
     2221 ttcgccagtg acgattgatt gcagcgaacg ctttacttca accggcgaga tgtgatgttc
     2281 ctgctcgacg gtttgcagac gcttcctgcc gttcgagacg tgcttcttat acgccttctg
     2341 atcgtcggct ttcagacgct tcttgcttaa cctgtcagtg taagtgtcga tctcgcgctc
     2401 ggccgagcgc acttctttct gcacgtttcg aatcgagttg atgagccgct gccgcgatcg
     2461 ctcggtcatg ttcaggcgac caatctcgtc cgcgatctcg atgcgcagcc gcgctacttt
     2521 acgtcgtaag cgcagtagct ttttagtctt cttcccgcga gtaatctttt gctcggcgcg
     2581 tagcttgacc cattccttca aggcgttctt gaacagcttg cgaatatttt caatgccttc
     2641 gatggtccaa tctcgatact cttcggcctt gtcttcctcg ccggccagtt cggcttgctc
     2701 ggaaaaggtg acgacttcgc ggatgttgag tcttccggcg gcaagttcct cgccgatctt
     2761 ctgaagctcg cccacggcaa tcggcgatcg cgcaatggct ttctgagtct tgatctggcc
     2821 gcgctcgatg cgtttggcga ttgcgacttc gccttcgcgg gtcagcagcg gcacgacacc
     2881 catctcgcgc aggtaaagcc gcaccggatc gttggtcttt tccagcgcac ccgccgagag
     2941 atccagctcg agttcctcgt cgcccgactc ttcgtcgtca gtggcgatcg tcgcggcctg
     3001 ttcgatcaaa cgctcgtcag aatccgcgac atgaatgttc gaggcgtcga gcttttgcaa
     3061 aacgtcttcg atgtcgtccg gcgaaactac attttccggc agttcgcgat tcaagtcgtc
     3121 atacgacaaa aatttcttat ctccgcccaa ttgcaacaga cgatccataa cgtcatcccg
     3181 atccttttct tctcttctca caataatgtt ttcctgaaaa tgcttgcgca gttatgattt
     3241 tcgaatcacc catccgtcgc gcgagcctgt ggtagaaatt cactgcgccg cttggacaat
     3301 ttcagatgct cagtagagag acgatcgcgt cgctcactgt cgcccgcgcg ctcggcttcc
     3361 gcgatctcgg aactcatctc atcaatacgg cgattcaatt tcatcaaacg caaagcgttc
     3421 aaacaactat cggcggcagc taacgactcg tcgaaagttt caagctgttc ggttaccatc
     3481 aagcgcggca gcaactcagc cacgatcgac tcgtccgccg tttcctgagt caaggaatca
     3541 aagttgactt cacttccctt ttcatcaatc ttgacgagcg cgcggaagat cggcgccgtc
     3601 gccaggtcct cgtaatcccc agtttccaaa cgcggcaaaa ctatctttcg caactcttcg
     3661 ctcgccaaca gaagctccaa aagcctttct tccgcgaccg tccgctgagc actgcgcttg
     3721 accagttcct gaacgaccgc ggcatccgtg cttgcgccga tcctgatccg ttgccagagt
     3781 tcgcgctgct gatccgtttg cacgcgcagc gcatccatcg cgatgtcaaa atactcgcgc
     3841 cgctgaatcc ggctgcgaac cgcgcgcaca aacgggagcg tctcctcaac tgccgcagcc
     3901 ttgtcagccg ggctgtgaag gttacgatcc cg
//
LOCUS       DASZZE010000069         8245 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_35145, whole genome shotgun sequence.
ACCESSION   DASZZE010000069 DASZZE010000000
VERSION     DASZZE010000069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8245)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8245)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8245
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35145"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..292
                     /gene="mraW"
                     /locus_tag="VHD88_01305"
     CDS             <1..292
                     /gene="mraW"
                     /locus_tag="VHD88_01305"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: protein motif:HMM:NF013919.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="16S rRNA
                     (cytosine(1402)-N(4))-methyltransferase"
                     /protein_id="HVS20448.1"
                     /translation="EELDRFVANAIDVLEPEGRLAVISFHSLEDRIIKRTLLRLSGRC
                     QCPPRVPTCTCGARKLVDILTRRPLTPDEDEIDRNPRARSAKLRACQKSGAE"
     gene            323..799
                     /locus_tag="VHD88_01310"
     CDS             323..799
                     /locus_tag="VHD88_01310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20449.1"
                     /translation="MIRRVPSKQRNATVVREADRSALMRLGMLLFCGLVLAGGFVYAG
                     SQHFAALKLGYETENMRKVRDQLVEDQHRLVLAREEAASPARLERAARQLGMQPMQAA
                     QVDPLRRPLKSLVEKNSAAPAQSASAPARIIRTRPVGQRNPNESSSRHANLITRQR"
     gene            826..2892
                     /locus_tag="VHD88_01315"
     CDS             826..2892
                     /locus_tag="VHD88_01315"
                     /inference="COORDINATES: protein motif:HMM:NF013100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein"
                     /protein_id="HVS20450.1"
                     /translation="MPRRSTVIDAPRPGNSHRRALFVSVGLLAWMLVIGARLVQLQIN
                     QHDDLTARARSQQTATIETNATRGQVLDREGRELARSIDTESFYADPSEIADINETAR
                     RIAMITGQDRAELANRLGDAKESKKKFVWIARQLDVQLANKLDALNLAKVYSRKEPKR
                     YYPNDSLAAHVLGFVGTDEIGLSGVEQYYNDKIRGESGKIYLERDRDRRAFESYEVQP
                     RPGQTVVLTIDQTVQYRTEQALTSAVERAHAKSGAAIVMDPRTGEILALANAPSFDPN
                     QPAKDSAEVRSNGALQSIYEPGSTFKIVAYSAAIEKGLVKPEDKIDCQMGQITVAGRL
                     IHDHHPFGILTVADALALSSNVGAIKLGLLVGNESMYDFMKRLGFGSRTGIDLAGESP
                     GILRRLNRWQPSSIGSIAMGQEVGVTPLQMATAYSALANNGMLVKPHLVRELRSPDGT
                     VVFQAKPEARRALKPETTAALRGMLEGVTLHGTARKAQLDGYSAAGKTGTAQKIDPRT
                     HTYSATKYIGSFVGFAPVNNPAVVIIVVIDEPQGSYHGGDVAAPVFREIAEQILPGLS
                     VTPDVETKMGRELIARNSQPSPQLVKETQLQSEQREATLPKVAARNFSGQVSEVVFAV
                     ATKRGALMPDLRGQSVRDAARTCAQLGLQLEARGEGHAVRQSPEPGAEIESGQLVRVD
                     FTRGNQ"
     gene            2971..4419
                     /gene="murF"
                     /locus_tag="VHD88_01320"
     CDS             2971..4419
                     /gene="murF"
                     /locus_tag="VHD88_01320"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: protein motif:HMM:TIGR01143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0047480 -
                     UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HVS20451.1"
                     /translation="MGATTDALRTEFFDKEIVDFSIDSRTVGAGELFFALSQPDYERA
                     GFNGQFADAHNFISQALARGAIAAVARRDRVAGDNKLVELSDRLLVVDDAIGALQMLA
                     RKVNGQWARPVIGITGSAGKTTTKELTAHVLASSGHRVLKSERNYNNNLGLPLSVSQM
                     VSRGHSPNDYDLAVLEMGMSSPTHEIRRLVQITPPDIGVELMIAPVHLEHLGTIENVA
                     AMKAELIEGLKPGGIAVLNADDELVMNMKSKTDGPVLTFGIRNEADVTATNIDASRFG
                     SIRFRLQTPAGEAAAELPMTGHHNLMNALAASAVATALKVKPELIANALRTAKPPKMR
                     GEVLNFAAGFTVVDDSYNSNPRSLLGMARTLAEASESVKRRIVIAGEMLELGPEAPKM
                     HRDAGREIASLGIDVVWGVRGLAEEIVAGAREGGTTATQFFKSSEEAAAVAVNEVREG
                     DLILVKGSRSVETDKIVAVLKERFALAGEDRR"
     gene            4481..5635
                     /gene="mraY"
                     /locus_tag="VHD88_01325"
     CDS             4481..5635
                     /gene="mraY"
                     /locus_tag="VHD88_01325"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR00445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008963 -
                     phospho-N-acetylmuramoyl-pentapeptide-transferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HVS20452.1"
                     /translation="MIYYIFYELIYGHFKEQDWWLVKGLNVFQYVTFRTAYASVTAML
                     IALLSGRRVISALKKWNIGQQIREEGPQAHIAKRDTPTMGGLLLIASVVLSTLLWAKL
                     SSVYVWVIIVATLAFGAVGFADDYLKLVKRRSLGLTGRQKLIFQLITAVAIWATLYIS
                     TKYFATKYSWNVSIPFFKDTAIPNGISTVGPIVYLVLIVVVLLGATNAVNLTDGLDGL
                     AISVTFIAMTALTAFTYLSSDARWASYLDLTHRPEAAELTVFCGAMAGASLGFLWFNA
                     PPAEIFMGDVGSLAIGGAIGTIGVLTKQEFMLVMVGGVFVMEAVSVMLQVSVFKMTKS
                     STGVGRRMFKMTPLHHHFEMLGWKEPKIVFRFLILAILFALLSLSTLKLR"
     gene            5772..7166
                     /gene="murD"
                     /locus_tag="VHD88_01330"
     CDS             5772..7166
                     /gene="murD"
                     /locus_tag="VHD88_01330"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR01087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008764 -
                     UDP-N-acetylmuramoylalanine-D-glutamate ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HVS20453.1"
                     /translation="MEIAGRKVLVIGAARSGIASARFLAKRGAIVALNDRKALSEWSR
                     EALALKTESVGCVAGEPPSWLLDQIDLVVVSPGVPTKAIPIRYADRRGAEVIGEVELA
                     SRFLRGRIVAITGTNGKTTTTSLIGEMLKDAEINVQVGGNIGTPLISMVDSSRDDGWT
                     VAELSSFQLETIVDFHPTVAAVLNVTPNHMDRYETLMDYAAAKHRIFTNQTVGDVAIL
                     NADDEIVSSWARGLRAHVVQFSVQRELHEGLFLRGRELVSRTADGERVLMTRDEMQLR
                     GTHNVENVLAAMAAGLACGAPPESLRETVRHFRPVEHRLEEVAEVRGIRFFNDSKATS
                     VDATIKALEAFADDRGKIVLILGGRGKQAPYAPLGKLIRERVRVMILIGEDAPTIENE
                     LKDAAPFVHAASMHDAVKLAFANAKPGDVVLLAPACASFDMFKSFEYRGRVFKEEVSS
                     LRFQVSGRKPERET"
     gene            7182..>8245
                     /gene="ftsW"
                     /locus_tag="VHD88_01335"
     CDS             7182..>8245
                     /gene="ftsW"
                     /locus_tag="VHD88_01335"
                     /inference="COORDINATES: protein motif:HMM:TIGR02614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HVS20454.1"
                     /translation="MPQKLQADKWLFSATIGLALFGVVMVYSASAVIALQENHSQFHY
                     VIKQSVWTLIGFAAMFMAIRFDYHRLNRRWIVYGLLLATVLLLIAVFGFSPVNGACRW
                     IKFAGFSAQPSEIAKLALALFLARFLERRAGSETSFWKTFLPCIIVTGALAGLVVKEP
                     DLGTALMLAIICFAICFAAGVRPRHMIYASVPALLFVGKMLIFTPFRWRRMASFVDPW
                     ADQQGAGYQVVQSLIAVGSGGPHGLGFAQGRQKLLFLPFAHSDFIFAVIGEELGLVGT
                     LIVVFVFAIFLWRGMRAALRAPDRFGMLLGIGIVVGIVAQALLNMSVVLALMPTKGIP
                     LPFISYGGSSLVATLAGVGIL"
BASE COUNT         1733 a         2121 c         2583 g         1808 t
ORIGIN      
        1 cgaagagctc gatcgttttg tagccaacgc gattgatgtt ttagaaccag agggtcgcct
       61 tgcggtaatc agttttcatt cgcttgagga tcgcatcatc aagcgaacgc tgttgagact
      121 ttccggtcgt tgccagtgtc cgccgcgtgt gccgacctgc acgtgcggcg cgcgaaagtt
      181 ggttgacatc ctaacgcggc gcccgctcac gccggatgag gatgagattg atcgcaatcc
      241 ccgcgcgcgc agcgcgaagt tgcgagcgtg ccaaaaaagc ggtgcggagt aaccggaccc
      301 aaaagattcg caggagctag tgatgattcg acgagttccc tcaaaacaaa gaaacgcaac
      361 tgtcgtacgt gaggctgacc gcagcgcttt gatgcggctt ggcatgcttc tgttttgcgg
      421 cctggtgttg gcgggcggtt ttgtttacgc cggaagtcag cacttcgccg cgctcaagct
      481 cgggtacgaa actgagaaca tgcggaaggt tcgcgatcag ttggttgagg accagcacag
      541 attggtttta gcgcgagaag aagcagccag cccggcgcgc ctggagcgtg ccgcgcgtca
      601 gcttggcatg cagccaatgc aggctgcgca agtagatccg ctgagaaggc cgctcaagag
      661 tttagtcgag aaaaattcgg cggcgccggc gcaatcggca agtgcgccag cccgcattat
      721 tcggacgaga cctgtcggtc aacgaaaccc aaatgaatcg agttcgcggc acgccaacct
      781 gatcacgaga cagcgctgat ttggccgaaa tctctggagc tctgaatgcc ccgtcgttct
      841 accgtcatcg atgcgccgcg gcctggcaat tcgcaccggc gtgcgttgtt cgtctcggtc
      901 gggctgctgg cctggatgtt agtgattggg gcgcgactcg ttcaactgca aattaaccaa
      961 cacgacgacc tcacagcccg cgccagaagt cagcaaaccg ccacgatcga aaccaatgca
     1021 acccgtggac aggtactcga tcgcgagggc cgcgagttgg cgcgcagcat cgacactgaa
     1081 tcgttctacg cggatccgag cgagatcgcg gacattaacg agacagctcg ccgcatcgcg
     1141 atgatcaccg ggcaggatcg tgccgaactc gccaatcgac tgggtgatgc caaagaatct
     1201 aagaaaaagt ttgtctggat cgcgcggcag cttgatgttc agttagctaa caagctggac
     1261 gcgctgaacc tcgccaaagt ctattcgcgc aaagaaccga agcgctacta tccgaacgat
     1321 tcgctcgccg cgcacgtact cggttttgtg ggaaccgatg aaatcggact gagcggcgtc
     1381 gagcaatact acaacgacaa gattcgcggc gagtcgggaa agatttattt ggagcgcgac
     1441 cgcgacaggc gcgctttcga aagctatgaa gttcaacccc gtccgggaca aacggtcgtt
     1501 ctcacgatcg accagacagt gcagtaccga actgagcaag ccttgaccag cgcggtcgag
     1561 cgtgctcatg caaagtccgg cgccgcgatc gtgatggacc cgcgcactgg cgagattctc
     1621 gcgctggcga acgcgccgtc attcgatcct aatcagccgg ccaaggattc cgccgaagtg
     1681 cgctcgaacg gtgcgctgca aagcatttat gagccaggct cgaccttcaa gatcgttgcg
     1741 tattcagccg cgatcgaaaa gggtttggtc aagccggaag acaagatcga ttgccagatg
     1801 ggccagatca cggtcgccgg tcgtttgatt cacgatcacc atccgttcgg aattctaacc
     1861 gtggccgatg cattggcgct atcaagcaac gtcggcgcaa tcaagctcgg tctgctggtt
     1921 ggcaatgaat cgatgtacga ctttatgaag cgtctcggtt ttggttcgcg aacgggaatc
     1981 gatctggccg gagagtcacc ggggattctg cgtcggctga accgatggca gccttcgtcg
     2041 atcggatcga tagcgatggg tcaggaggtc ggcgttacgc cgctccagat ggcgacggcg
     2101 tattccgcgc ttgccaacaa tggaatgctg gtcaagccac acctcgtccg agagttgcgc
     2161 tcgcctgacg gaacggtcgt gttccaggcg aagccggaag ctcggcgcgc tttgaaacct
     2221 gaaacgactg cggctctgcg cggcatgctc gaaggcgtga cgttgcatgg cacggcgcga
     2281 aaggcccaac ttgacggtta cagcgcggca ggcaagaccg gcacagcgca aaagatcgat
     2341 cccaggacgc atacctattc tgcgacgaag tacattggtt cgttcgtggg cttcgcaccc
     2401 gtgaataatc ctgccgtcgt gatcattgtc gtgattgatg agccgcaggg ttcctaccac
     2461 ggtggtgatg tggcagcgcc ggtctttcgc gaaattgcgg aacagatact tcccgggttg
     2521 agtgtgacgc cggacgtgga aacgaaaatg ggccgtgaac taatcgcccg aaactctcaa
     2581 ccgtcgccgc aactcgtgaa ggagacgcag cttcagagcg aacaacgtga agcaacattg
     2641 ccgaaggttg cggcgcgcaa cttcagtggc caggtgagcg aagtagtctt tgcggtcgcc
     2701 acgaagcgag gagcgttaat gcctgacttg cgtggtcaaa gcgtgcgcga tgcggcgcga
     2761 acttgcgcac aactcggttt gcaactcgaa gcgcggggcg aagggcacgc cgtgcgtcaa
     2821 agtcccgagc ccggcgcgga aattgaatcg ggccaactcg tgcgggtcga cttcacccgc
     2881 ggcaaccagt gaggtccgaa aactgcgcgg cgacatgaaa ggcgttaagc tggatgggcc
     2941 gaagtgaatc ttaagacggc agcaagtttg atgggtgcaa cgacggatgc gctgcgcact
     3001 gagttctttg acaaagaaat agttgatttc tcgatcgatt cgcgcacggt cggagcaggc
     3061 gagcttttct tcgctctatc acagccggat tatgaacgcg cgggtttcaa cggccagttt
     3121 gccgacgctc acaacttcat ttcgcaggcg cttgcgcgtg gagcgattgc cgcggttgcc
     3181 cgacgcgacc gcgtagccgg cgataacaag ctggtcgagc ttagcgatcg attactggtc
     3241 gtcgacgacg cgatcggcgc tttgcaaatg ctggcgagaa aggttaacgg gcaatgggcg
     3301 cgacctgtta tcgggatcac cggcagcgcg ggaaagacga caaccaaaga gctaactgcg
     3361 cacgtgctgg caagctcggg tcaccgggtt ctaaagagtg agcgcaatta taacaacaac
     3421 ctcgggctgc cgctttcagt ttcgcagatg gttagccgcg gccacagtcc taatgattac
     3481 gatttggcag tacttgaaat gggaatgtcc tcgcccacgc acgagattcg acggctcgtg
     3541 caaatcacgc cgcccgacat cggcgtggaa ctaatgatcg cgccagtgca tcttgaacac
     3601 ctcggcacga tcgaaaacgt tgcggcgatg aaagccgagt taatcgaagg tctgaaaccc
     3661 ggcggcatcg ccgtactaaa cgcggatgac gaactcgtga tgaatatgaa gtcaaagacg
     3721 gatgggccgg tgctcacctt cggtatacgg aacgaggcgg acgtgacggc caccaacatc
     3781 gacgcttcgc ggtttggttc gattaggttt cggctgcaaa cgccggcggg cgaagcggcc
     3841 gctgagttgc cgatgacggg acaccacaat ttgatgaatg cgctggcggc gtcggcggtc
     3901 gcgaccgcac tcaaggtcaa accggaactg atcgcgaatg ctttgcggac ggcgaaaccg
     3961 ccgaagatgc gcggtgaagt tttgaacttt gccgcaggct ttacggtcgt cgatgattcg
     4021 tataattcga atccgcgctc gctgctcggc atggcgcgca cgttggcgga agcgagtgaa
     4081 agcgtgaagc ggcggatcgt aattgcaggc gagatgcttg agttaggtcc cgaagcgcca
     4141 aagatgcatc gtgacgcggg ccgcgagatt gcctctcttg gcatcgatgt tgtttgggga
     4201 gtgcgcgggt tggccgaaga gattgttgcc ggcgcgcgcg agggaggaac aaccgcgacg
     4261 cagttcttca agtcttccga agaagctgcc gctgtggctg tcaacgaggt tcgcgaaggc
     4321 gacttgattt tggtcaaagg ctcgcgcagc gttgagactg acaagatcgt cgctgtgttg
     4381 aaggaaaggt tcgctttggc cggtgaggat agaagataag cgggcagtcg tcagggtttg
     4441 ttgccgatcc cgatccctga ctcttggccc ctgcacttga atgatctatt acatctttta
     4501 cgaactgatc tacggccact tcaaagagca ggattggtgg cttgtcaaag gtctgaacgt
     4561 ttttcagtac gtaacgtttc gcaccgctta cgcttcggtc accgccatgc tgattgcgct
     4621 gttgtcaggt cgaagagtca ttagcgcttt gaagaaatgg aacattggtc agcagattcg
     4681 cgaagaaggc ccgcaagcgc acattgccaa gcgcgacacg ccgacgatgg gcggactgct
     4741 gctgatcgcc tcggtcgtgc tttcgacttt gctgtgggcg aaactctcga gcgtctatgt
     4801 ttgggtgatc atagttgcga cacttgcgtt cggagccgtg gggttcgccg acgattatct
     4861 gaagctggtg aaacgccgca gcctgggatt gacgggacgg cagaagctga tttttcagtt
     4921 gataaccgcg gtcgccatct gggcgacgtt gtacatatct acgaaatact ttgcaacgaa
     4981 gtactcctgg aacgtcagca tcccgttctt caaagacacc gcgataccaa acggcataag
     5041 cacggtcgga ccaattgttt atctcgtact gatcgtcgta gttcttctgg gtgcgacgaa
     5101 cgctgtgaac ttaaccgacg gtttggatgg tctggcgatc agcgtcacct tcatcgcgat
     5161 gacggcgttg accgccttca cttacctgag cagcgacgca cgttgggcca gctacctcga
     5221 tttgacgcac cggccggaag ccgcggagtt gacggttttc tgtggcgcga tggcgggtgc
     5281 gagcctgggt tttctctggt tcaatgcacc acctgcggaa attttcatgg gcgacgtcgg
     5341 cagcctggcg atcggcggcg cgatcggaac gattggcgtg ctgacgaagc aggaattcat
     5401 gttggtgatg gtcggcggcg tgttcgttat ggaagcggtg tcggtgatgc tgcaagtaag
     5461 cgtgttcaag atgacgaaga gcagcaccgg cgtgggccgg cgcatgttca agatgacgcc
     5521 gctgcatcac cactttgaaa tgctgggttg gaaagagccg aagattgtct ttcgattttt
     5581 gatcctggcg atactgtttg cgttgctaag tctttcgact ctgaaactgc gctagctgac
     5641 gacggtcgtt tagaggggct actgcccgct ggagcgggtg agatgaagat catcacacag
     5701 gtggctgggt ctttgttgct ggcgctcatc gtgctacgcg cttcgggatc gctgttcggc
     5761 gtcatttacg agtggaaatt gcgggcagga aagtcttagt catcggcgcg gcccgcagcg
     5821 gcatcgccag cgcccgcttt ctcgcgaaac gcggcgcgat tgtggcgcta aatgatcgca
     5881 aagcgctgag cgaatggtcg cgggaagcgc tggctttgaa aactgaaagc gtcggttgcg
     5941 tcgcgggcga gccaccttcg tggctgctgg atcagatcga cctggtcgtt gtcagccctg
     6001 gcgtgccgac gaaagcgatt ccgattcgct acgcggatcg ccgcggcgcg gaagtgattg
     6061 gcgaagtgga actcgcgtcg cgattcttgc gcgggcgtat cgtcgccatc acgggaacga
     6121 atggaaagac gacgacgacg tcattgattg gcgaaatgtt gaaagacgct gaaattaacg
     6181 tgcaggttgg cggcaacatc ggcacgcctt tgatttcgat ggtcgattcg tcgcgcgacg
     6241 atggatggac ggtggccgag ctttcgagtt ttcagttgga aacgatcgtg gattttcatc
     6301 cgacagttgc ggcggtgctg aacgtaacgc caaatcacat ggatcgttac gagacattga
     6361 tggattacgc ggcggccaag catcgcatct ttaccaatca gaccgtgggc gacgttgcga
     6421 ttctgaacgc cgacgatgaa atcgtttcgt cctgggccag aggcttgcgc gcgcatgttg
     6481 tgcagttcag tgtgcagcgc gaactgcatg aaggtttgtt tctgagaggg cgcgagctgg
     6541 tctcacgaac cgcagacggt gagcgtgtgc tgatgacgcg agacgagatg caactacgcg
     6601 gaacgcacaa cgtcgagaac gtgctcgcgg cgatggcggc agggctggct tgcggcgcac
     6661 cacctgagtc tttgcgcgaa accgtgcggc actttcggcc agtcgaacat cgcctggaag
     6721 aagttgcaga agtaagaggc atacgttttt tcaatgattc aaaggctacg agcgttgacg
     6781 ccacgatcaa agcgttggaa gcgtttgctg atgacagagg caagatcgtt ttgattctcg
     6841 gcggtcgagg gaagcaggcg ccgtatgcgc cgctcggcaa actgatccgc gaacgtgtgc
     6901 gcgtgatgat tttgattggc gaagatgcgc caacgatcga gaacgaattg aaggacgccg
     6961 cgccgttcgt gcacgccgcg agtatgcatg acgcggttaa gctcgcgttc gcgaacgcaa
     7021 agccgggcga tgttgtcctg ctggcgccgg cgtgcgcgag ttttgatatg ttcaaaagtt
     7081 tcgagtatcg cggtagagta ttcaaggagg aagtttcaag tttaaggttt caagtttcag
     7141 gtcgaaagcc ggaacgtgaa acctgaaaca cagttttgac aatgccgcaa aaattacaag
     7201 ccgataaatg gttgttctca gcgacgatag gactggcgct gttcggcgtc gtcatggttt
     7261 acagcgcgtc ggcggtaatc gctttgcagg agaatcacag ccagtttcat tacgtgatca
     7321 agcagagcgt gtggacgtta attggattcg cggccatgtt catggcgatt cgattcgact
     7381 atcaccgctt gaatcgccgc tggatagttt acggtttgct gctggcgact gtgctgttgc
     7441 tgatcgcggt ctttggattt tcgccggtca acggtgcgtg tcgatggatt aagttcgccg
     7501 gcttttcagc gcagccttca gagatcgcaa agctggcgct ggctttgttc ctggcgcgct
     7561 tcctggaaag acgcgcaggc agtgaaactt ctttctggaa aacttttttg ccttgcatca
     7621 tcgtgacggg agcgctggca ggtttggtgg tcaaggagcc tgatttgggc acggctctga
     7681 tgctggcgat catttgcttt gctatttgtt ttgctgcggg cgtgcgtccg cgtcacatga
     7741 tctatgcgtc ggtgccggcg ctcctgttcg tcgggaagat gttgattttc actccgtttc
     7801 gctggcggcg catggcttcg tttgtcgatc cgtgggcgga ccagcaaggc gccgggtatc
     7861 aagtcgtgca atcgctcatc gcggttggct cgggcggacc gcatggcctc ggtttcgcgc
     7921 aaggccgcca aaagcttttg tttctaccat tcgcgcattc cgatttcatt ttcgccgtga
     7981 tcggtgaaga gttgggtttg gtcggaacgc tcatcgtcgt tttcgtcttt gcgatctttt
     8041 tgtggcgcgg aatgcgcgcg gcgctgagag cgccagatcg ttttggcatg ctgctcggta
     8101 tcggcattgt cgttggcata gtggcacagg cgctcttgaa catgagcgtt gtgctggcgc
     8161 tgatgccgac gaaagggatc ccgctgccgt ttatttcgta tggcgggtct tcgctggttg
     8221 cgacgctggc gggagtagga atcct
//
LOCUS       DASZZE010000070         2659 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_279392, whole genome shotgun sequence.
ACCESSION   DASZZE010000070 DASZZE010000000
VERSION     DASZZE010000070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2659)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2659)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2659
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_279392"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1580
                     /locus_tag="VHD88_01340"
     CDS             <1..1580
                     /locus_tag="VHD88_01340"
                     /inference="COORDINATES: protein motif:HMM:NF024579.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20455.1"
                     /translation="MLLGSISALGSHYVVSLDAVNAHTGEAIANEQFETEGKEQVLKS
                     LGQAASKLREKLGESLGSIQKFDVPIEQVTTSSLEALQYYSLGREQHSSGKYAEAIPF
                     YRRAIELDRYFAIAYARLAVVYTNEGQSELSRQASQKAYELRDRVSEREKLYVEWSYY
                     GNVTGQWDKTSEALELWKKTYPRDWVPFNALALRYTLVGPFEKATGQANEAIRLNPNS
                     ALPYVNLAVAFMGLNRLDEAKKVLQQALDQKLETTNMRARFYDIAFVEGDAPAMKAQI
                     DWAAGKPDEYAAQNWQAEAAEFSGQLARANQLNDHAIDLVQRKSELKETAAQTILQEA
                     DRNATFGSCGSVGQSTSRALALSRDRLSLIVAASAFAACGQAGPAQSLIDELTKRFPD
                     DTLLNTVSVPLMRAHLELSRGNGAQAIQLLEPARGYEVYGDFWPQYIRGQAYLKQRNG
                     AQAVTEFQSIIDHRGWYPLSSLYPLAQLGLARAAVLNGDASKARKAYQDFFALWKDAD
                     PAIPILIEAHAEYEKLK"
     gene            1805..2548
                     /locus_tag="VHD88_01345"
     CDS             1805..2548
                     /locus_tag="VHD88_01345"
                     /inference="COORDINATES: protein motif:HMM:NF001030.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HVS20456.1"
                     /translation="MSGHSKWHSIKHKKGATDAKRGKLFTKFIKEITVAARTGGGDPD
                     SNARLRKAINDAKAGNMPNDTIDRAIRRGTGAEEGVNYDEITYEGYGPGGVALLIEAV
                     TDNRNRTVAEIRHMFSKNGGNLGEAGSVGWLFEKKGYIVVEKSAKPEEELFDIAIEAG
                     ADDLRDDEDNFEIITSPENFDPVSAAIKSAGIEPQVAEISMVPQNYIKLEGGNAQQML
                     RLMEALEDHDDVQRVHANFDISEADMAAA"
BASE COUNT          644 a          702 c          759 g          554 t
ORIGIN      
        1 cgatgttgtt gggatcgatc tcggcgttgg gcagccacta cgtggtctcg ctagacgcgg
       61 tgaacgcgca cactggcgaa gcgatcgcta acgagcagtt cgaaaccgaa ggcaaagaac
      121 aggtgttgaa gtcgcttggg caggcagcgt cgaagttgcg cgaaaagtta ggagagtcgc
      181 tcggctcgat tcagaagttc gatgttccaa tcgaacaggt gacgacttct tcgctggaag
      241 cgctgcagta ttactcgctg gggcgcgaac aacattcgag cggcaagtac gccgaagcga
      301 ttcctttcta tcgccgcgcg atcgaacttg atcggtattt tgcgatcgct tatgcgcgcc
      361 tggcggtcgt ctataccaac gagggtcagt ctgagctttc gcgccaggct tcgcagaaag
      421 catacgaact tcgcgaccgc gtcagcgagc gcgagaagtt gtatgtggaa tggagctact
      481 atggcaatgt aaccggacag tgggacaaga ccagcgaagc gttagaactt tggaagaaaa
      541 cttatccgcg cgattgggtt ccgttcaacg cgctcgcgct gaggtacacg ctcgttggtc
      601 cgtttgagaa ggcaactggg caagctaacg aagcaattcg acttaacccg aacagcgcgc
      661 tgccttatgt gaatctcgct gtggctttca tgggtctcaa tcgtctcgac gaagcaaaaa
      721 aggttctgca gcaggctctg gatcaaaaac tggagaccac caacatgcgc gcgcgtttct
      781 atgacattgc tttcgtggag ggagacgcac ccgcaatgaa ggcgcagatc gattgggcgg
      841 cgggcaagcc tgacgagtat gccgcgcaaa actggcaagc cgaagcggca gagttttccg
      901 gccagttagc cagggcgaat cagcttaatg accacgctat tgatctggtg caacgaaaga
      961 gcgaattgaa agaaaccgcc gcgcaaacga tcctgcaaga ggccgaccga aacgcgactt
     1021 tcggaagctg cggatcagta ggtcaatcga cgagcagggc gctggcccta tcgcgcgatc
     1081 gtctgagttt gattgtcgcg gcgagtgcct ttgctgcttg cggccaggct ggtccggcgc
     1141 aatctttgat cgatgaacta accaaacgat ttccggatga cacgttgctc aacaccgtct
     1201 cagttccgct gatgcgggcg caccttgagt tgagccgagg aaatggcgcg caggcgattc
     1261 agttgctcga gcccgcgcgc ggttacgaag tttacggtga tttctggccg caatacattc
     1321 gcggacaggc ttatctgaaa cagcgaaacg gtgcgcaagc ggtgactgag tttcaatcga
     1381 tcatcgatca tcgtggctgg tatccgttgt cgtccttata tcctctcgcc caactcggtc
     1441 tggcgcgcgc ggccgtgctc aacggcgacg cttcaaaagc ccgcaaagcc tatcaggatt
     1501 tcttcgcgct ctggaaagac gccgatccag cgattcccat tctgatcgaa gcgcacgcgg
     1561 aatacgaaaa gctgaaatag attttctcta gtccgcacgg tcgtgtcaga agcccgaccg
     1621 tcagggaggg ctatctaccc agaacatgcc ctcccttacg atcgggcttc tgacaccgaa
     1681 gcaatgccgt aagcatcgat caacgcgctc tttgttcgta gctcagcctc ttccggccgg
     1741 atgtgatata ttttgccctc aaactcaatc aggataattc tcttttaagg accgatgagc
     1801 tcaaatgtcc ggacattcga agtggcattc gattaagcac aagaagggtg cgactgacgc
     1861 taagcgcggc aagctcttca ctaaattcat caaggaaatc accgttgcgg cccgcaccgg
     1921 cggcggcgat cctgactcta acgcgcgact gcgcaaggcc atcaacgacg ccaaagccgg
     1981 caacatgccc aacgacacta tcgatcgcgc gatccgtcga ggcactggcg cggaagaagg
     2041 cgtcaattat gacgagatca cttatgaagg ttatggtccc ggtggcgtcg cattattgat
     2101 tgaagccgtg accgacaatc gcaatcgcac agttgccgag attagacaca tgttttccaa
     2161 gaacggcggc aaccttggcg aagctggctc ggtcggctgg ttgtttgaaa agaaaggcta
     2221 catcgtcgtt gagaaatcgg cgaagcccga agaagaattg ttcgatatcg cgatcgaggc
     2281 cggcgctgac gatttgcgcg acgacgaaga caactttgag attattactt caccggaaaa
     2341 cttcgatcct gtgagtgcag cgatcaaatc cgccggcatc gaaccgcagg tcgccgaaat
     2401 ttcgatggtg ccgcagaact acatcaagct cgaaggcggg aacgctcagc agatgctgcg
     2461 tctgatggaa gcactcgaag atcacgacga cgtgcagagg gttcacgcaa attttgatat
     2521 cagcgaagcc gacatggccg cggcttgagg cgcgggcggg gaaaatcggc cacagatcaa
     2581 cacggatggc acagatagaa tcaaacccga tccgtatgat ttgtctctcg aattgatccg
     2641 tgttatccgc gttcatctg
//
LOCUS       DASZZE010000071         2403 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_295501, whole genome shotgun sequence.
ACCESSION   DASZZE010000071 DASZZE010000000
VERSION     DASZZE010000071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2403)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2403)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2403
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295501"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..544)
                     /locus_tag="VHD88_01350"
     CDS             complement(<1..544)
                     /locus_tag="VHD88_01350"
                     /inference="COORDINATES: protein motif:HMM:NF014857.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20457.1"
                     /translation="MRILIIGSGGREHAIVWALQKNCSRALELFCAPGNAGIAQAAEC
                     VPIAATDVTVLAAHAEEMKIELTFVGPEAPLAAGIVDEFERRELRIVGPEREAARLES
                     SKAFAKDFMRRHRIPTAHYRIASSANEAIEILRSGEFGGETTSVVVKADGLAAGKGVV
                     VASSRVEAVQAVNDLTGGAVS"
     gene            complement(868..1077)
                     /locus_tag="VHD88_01355"
     CDS             complement(868..1077)
                     /locus_tag="VHD88_01355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20458.1"
                     /translation="MIPEAWDADMAEAIVLRLLARLAALWLVLQTFVVKEDLFASGPN
                     EVLATINTSDRSILKVSRLTVPGFS"
     gene            complement(1239..>2403)
                     /locus_tag="VHD88_01360"
     CDS             complement(1239..>2403)
                     /locus_tag="VHD88_01360"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HVS20459.1"
                     /translation="KQPEADNAAKTLTWMAGLLATMFIGTSVMAYLYHIHPHEHETVI
                     SQFGRIIFTGYLGWFYYLVQITTAGILVLAANTSFADFPRLSSLLARDRFLPRQFANR
                     GDRLVFSNGIVLLAVFSCVLVWAFRGETSRLIPLYAVGVFLSFTLSQAGMIVHWWREG
                     KSLREMRATASPSEVTRLEKRSHWRKSLVINGIGAVATCIVLMVFIATKFIHGAWVVV
                     LLVPLLVLMFLRIHRHYFDVAHQLSTEGLEPLRPIHHEVIVPISGIHRGVIAALEYAK
                     SIAPHHVTAVYVNLDDEATQKLREKWQQWGSGVNLVVVASPYRSLLRPLLNYVDRVKR
                     SSHGEVVTIVLPEFVPAKWWQNLLHNHNSLFLKGALLFKKGIVVTNVPYHLEQ"
BASE COUNT          557 a          719 c          636 g          491 t
ORIGIN      
        1 cgctaacggc gccgccggtc aagtcgttca ccgcttgcac cgcttcgacc cgcgaagacg
       61 cgacgacgac gccttttccg gctgcgagac cgtccgcctt gactactacg gacgtggttt
      121 cgccgccaaa ttccccgctg cgaagaatct ctattgcttc attggccgac gaagcgatgc
      181 ggtaatgcgc ggtcggaatg cgatgacgac gcatgaaatc cttcgcgaac gctttgcttg
      241 attccagccg cgctgcttcc ctttccggcc caacaattcg cagctcgcgt cgctcgaact
      301 catcgacgat acccgccgcc aacggcgctt ccggcccgac aaaggtcaac tcgattttca
      361 tttcttccgc gtgcgcggcg agcactgtga catccgtcgc ggcgatagga acgcactcag
      421 cggcttgcgc gattcccgcg ttgccgggcg cgcagaaaag ttccaacgct cgcgaacaat
      481 tcttttgcag cgcccaaaca atcgcgtgct cccggccgcc tgatccgatg attaagattc
      541 tcatgttccg cagagaggct ggcgttcgct cgcaagttcg tcgcgcacga tgaatgctac
      601 cgatgaaggg tgacttgtga aagtctcaga cacgctgcat tcttcgctca aaaatccttg
      661 acacgcttca gcatagttat aagttgcacg gcacggccgt cgcttagtgc tcgccataaa
      721 ttgcacaagc gtatcagcat gccgttcggt tttctgcggc ctcctcgcca gccttatcgt
      781 aagtcacgcc cgaccaatgg gcttcctgta tcttgccatt tgacgtgaca gcgcacaccg
      841 gagggagacc acatgtcaga cagcgaatca cgaaaagccg ggaacggtca aacgactgac
      901 tttcaggatc gatcgatcgc ttgtgttgat tgtggcgagc acttcgtttg gaccgctggc
      961 gaacaggtct tctttcacga caaaggtttg aagaacgagc caaagcgctg caagccttgc
     1021 aagcaagcga agaacgatcg cctcagccat atccgcgtcc caggcctcag gaatcaagca
     1081 acgaatcgaa gtgactgtgg cgtgcgccca atgcggtcaa caaaccaccg tgcctttcta
     1141 tccatcgcag ggccggccag tttattgccg ctcctgcttt ttagccgcgc gagcgatgac
     1201 ggcacagcat gaacaagcgt accgcagccg taacccagct actgctccag atgatacggc
     1261 acattggtga cgacgattcc cttcttgaac aacagcgcgc cttttaagaa aagcgaattg
     1321 tgattgtgca agaggttctg ccaccatttg gctgggacga actcggggag cacaatcgtg
     1381 acgacttcgc cgtgtgaact gcgctttacc cggtcaacat aattaagtag cggccgtagc
     1441 agcgaacgat acggcgaggc gacgaccacc aggttaactc ccgatcccca ttgctgccat
     1501 ttctctcgca acttctgagt tgcttcgtcg tcgagattga cgtaaaccgc ggtcacgtga
     1561 tgcggcgcga tcgacttggc gtactccagc gctgcgatca ctccccgatg tatgcctgag
     1621 atcggcacga tgacctcgtg atgaatcggc cgcaacggtt ccaggccttc ggtcgagagc
     1681 tgatgcgcaa catcaaagta gtgccggtga atcctcagaa acatgagcac cagcagcgga
     1741 accaacaaca ccacaaccca cgcgccgtgt atgaactttg tggcgatgaa aaccatcagc
     1801 acgatgcaag ttgcgacggc gccaatgccg ttgattacga gagactttct ccagtgcgat
     1861 ctcttctcga gtcgcgtcac ttcggagggc gacgctgtcg cgcgcatttc gcgcaaagat
     1921 tttccttcgc gccaccagtg cacgatcatt cccgcctgtg aaagcgtaaa cgagagaaac
     1981 acgcccacgg cgtagagcgg aatgagccgg ctggtctcgc cgcgaaacgc ccacaccagg
     2041 acgcatgaga agaccgccag caaaacaatt ccattcgaga agactaaccg atcaccgcga
     2101 ttcgcaaact ggcgcggcag gaatcgatct cgcgccagca gcgacgacag tcgcggaaag
     2161 tcggcgaacg aagtgttggc agccagaacc agaattccgg cagtcgtaat ttgaaccaga
     2221 taatagaacc agcccagata gccagtgaaa attatccgcc caaactgtga tatgacggtt
     2281 tcatgttcat ggggatgaat gtggtagaga taggccatca cgctcgttcc gatgaacatg
     2341 gtggccaaca gcccagccat ccacgtcaaa gttttcgccg cgttgtcggc ctcgggctgt
     2401 ttg
//
LOCUS       DASZZE010000072         2398 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_99261, whole genome shotgun sequence.
ACCESSION   DASZZE010000072 DASZZE010000000
VERSION     DASZZE010000072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2398)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2398)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2398
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99261"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..815
                     /locus_tag="VHD88_01365"
     CDS             <1..815
                     /locus_tag="VHD88_01365"
                     /inference="COORDINATES: protein motif:HMM:NF014665.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0016653 - oxidoreductase activity, acting
                     on NAD(P)H, heme protein as acceptor [Evidence IEA];
                     GO_process: GO:0006784 - heme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="COX15/CtaA family protein"
                     /protein_id="HVS20460.1"
                     /translation="TSDWPLSNGQFFPKMVGNLFWEHGHRLVATTVGLLTIVLAVCLQ
                     IRERRSWVKWLGWIALGGVVAQGLLGGLTVKMNLPLAVSAAHATLAQLFFLTTVSLAV
                     FTSRSWVVPTVSASEDGQNVSLRALCVASLAVILAQLVLGATLRHSATWDQPLPTGLL
                     LAHIGGAVTVTVVLGVTVATALLRHRSEAYLTRPALVAAGFLIIQLLLGLGAYITRAA
                     SPNDPQPLNPMISITVAHVACGALVFAATIVLTLRAFRVLRVERQTYVLAPA"
     gene            870..1787
                     /gene="cyoE"
                     /locus_tag="VHD88_01370"
     CDS             870..1787
                     /gene="cyoE"
                     /locus_tag="VHD88_01370"
                     /EC_number="2.5.1.141"
                     /inference="COORDINATES: protein motif:HMM:NF003349.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008495 - protoheme IX farnesyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006783 - heme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme o synthase"
                     /protein_id="HVS20461.1"
                     /translation="MKTAVIELHSPAAAQVIAPLSAQARIAAYVELTKPRITFLIVLT
                     AAAGFCLGSRGAVDYLVFTHAMIGIALLSSGIGTLNQFMERDLDALMRRTADRPLPSG
                     KLLPFEALWFGLVLTATAELYLGLFVNMLTAVLGLTVIAGYLFLYTPLKTRTTLSTVV
                     GAFPGAMPPLIGWTAARGQIDVGAWVLFAILFLWQFPHFLAIAWMYREDYGRAGIRML
                     PVVEPDGRVTGQQIVAYTLMLIPVSLLPVILGISGRFYFVAALALGLLFLASGVRAAL
                     SKSNQHARQLLLASVLYLPLLFGVMVLNR"
     gene            1915..>2398
                     /locus_tag="VHD88_01375"
     CDS             1915..>2398
                     /locus_tag="VHD88_01375"
                     /inference="COORDINATES: protein motif:HMM:NF014809.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit II transmembrane
                     domain-containing protein"
                     /protein_id="HVS20462.1"
                     /translation="MGRVLGIAIWLITLGSVWMFVSKRWWFPEAISEHGPQVDSQFMI
                     TIIVVGVAFAAAQIGLGWMVWKYRDTANTSRATYTHGNNRLEVVWTIVTAVIFISLAV
                     MGQRVWASLHLHSAPPGSYQVKVVAQQFSWNFHYAGKDNVFGRTDPKLIDDSSLNYVG
                     L"
BASE COUNT          420 a          639 c          725 g          614 t
ORIGIN      
        1 cgacttctga ttggccactt tcgaatggcc agttctttcc caaaatggtc ggcaacctgt
       61 tttgggagca tggccaccgt ttagtagcaa cgacggtcgg gttgctgacg attgttcttg
      121 ctgtttgttt gcagattcgc gaacgacgtt cgtgggttaa gtggcttggc tggatcgcat
      181 tgggcggagt tgttgcgcaa ggcctgctcg gtggtttgac agtcaagatg aatctgccgc
      241 tggctgtatc agcggcgcac gcgaccttgg cgcaattgtt ctttctaact acggtcagcc
      301 tggcggtgtt cacatcgcga agttgggtcg ttccgacagt cagcgccagt gaagatggac
      361 agaacgtttc gctgcgtgcg ctgtgcgtcg cgtcgctggc tgtgattctg gcgcaactcg
      421 tgttgggcgc gacgctaagg cactcagcga cgtgggatca gccattgccg actggcttgc
      481 tgttggctca cattggaggc gccgtgactg tcactgttgt gttgggagtc acagtggcca
      541 ctgcgctctt gagacaccga agcgaagcgt atctgacgag accggcttta gtggcggcag
      601 gctttctgat cattcaattg cttttgggct tgggcgcgta catcacgcgc gcggcttcgc
      661 ccaatgatcc gcagccactt aatccgatga tctcgatcac ggtggcgcat gtagcttgcg
      721 gcgcgctggt tttcgcggcg acgattgttc tgacattaag agcattcaga gttttgcgcg
      781 ttgagcgtca gacatacgtc ctggctcctg catagggcga catggtgatc gctgtttctc
      841 gtttttagaa agcgacaatt caattgttca tgaagactgc tgtcatagaa ctgcattcac
      901 ccgccgctgc tcaagttatc gcgccgctga gcgcgcaggc gagaatcgcg gcgtacgttg
      961 aactgacgaa gccgcgcatc acgttcttga tcgtgctgac tgcggctgcg ggtttctgtc
     1021 tcggttcgcg cggcgcggtt gattatcttg tcttcaccca cgccatgatt ggcatcgcgt
     1081 tgctttcgtc gggcatcggc acgctcaatc aattcatgga gcgcgatctc gatgcgttga
     1141 tgcggcgcac cgcggatcgg ccgctgcctt cgggcaaact tctgccgttc gaagcgctgt
     1201 ggtttggctt ggttttgacg gcgaccgctg aactgtacct tggattattt gtaaatatgc
     1261 tgacggcggt gctcggcttg accgtgatag ccggatacct cttcttgtac acacctttga
     1321 agacgcgcac gacgctctcg acggttgtcg gcgcttttcc cggcgcgatg ccaccgctca
     1381 ttggatggac cgcggcgcgg ggccaaatcg acgtcggcgc ctgggtgctt ttcgcgattt
     1441 tgtttctctg gcagtttcca catttcctgg caatcgcctg gatgtatcgg gaggattatg
     1501 gccgcgcagg catacgcatg ttgccggtcg tcgagccgga cggtcgcgta accgggcagc
     1561 agattgtcgc ttacacattg atgctgatac cggtgagctt gctcccggta attctgggaa
     1621 tctcgggccg gttttacttc gtcgccgcgc ttgcactggg cttactgttc ctggcgagcg
     1681 gcgtgcgcgc cgcgctttcg aaatcgaatc agcacgcgcg tcagctcctg ctggcttccg
     1741 tgctctactt gccgttgttg ttcggagtga tggttcttaa caggtgaagt tcgacaaact
     1801 tcagtttgtc gctgctcgcg ttcatatcca ggccgtttaa gaagagagtg gcctctttat
     1861 gcagacaacg acaaactgaa gtttgtcgga cagataatcc gaaggagaca atcgatggga
     1921 cgcgttcttg gcatagccat ctggctcata acgctcggct cggtttggat gtttgtaagc
     1981 aagcgttggt ggtttcccga agccatctct gagcatgggc cgcaagtcga tagccagttc
     2041 atgatcacga tcatcgtcgt gggcgtggct ttcgccgccg cccagatcgg actgggctgg
     2101 atggtctgga agtaccgcga cacggcgaac accagccgcg cgacgtacac gcacggcaac
     2161 aaccggctgg aagtcgtttg gaccatcgtg accgcggtca tcttcatcag tctggccgtg
     2221 atggggcaga gagtttgggc atcgctgcat ctccactcag cgcccccggg ttcttatcaa
     2281 gtcaaagtgg tcgcgcagca gtttagttgg aatttccact acgcgggcaa ggacaacgtc
     2341 ttcgggcgca ccgatccgaa gctgatcgac gattcgtctt tgaattacgt cgggctcg
//
LOCUS       DASZZE010000073         2235 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_18207, whole genome shotgun sequence.
ACCESSION   DASZZE010000073 DASZZE010000000
VERSION     DASZZE010000073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2235)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2235)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2235
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18207"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(65..826)
                     /gene="fabG"
                     /locus_tag="VHD88_01380"
     CDS             complement(65..826)
                     /gene="fabG"
                     /locus_tag="VHD88_01380"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: protein motif:HMM:NF005559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004316 - 3-oxoacyl-[acyl-carrier-protein]
                     reductase (NADPH) activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-[acyl-carrier-protein] reductase"
                     /protein_id="HVS20463.1"
                     /translation="MSEVGKQFSGKTAIVTGATRGIGRAIALELARRGADVAFNFAKS
                     AEASETLKSELEALGVRALASQCDVANTEAAAEMVKQIKDAFGRIDFLVNNAGIVRDT
                     LILRMKEDDWDAVVDTNLKGAWNFAKASLRVMLRQEEGCSILNITSISGVVGMAGQSN
                     YSASKAGMIGLTKALAREVASRKVTVNALALGMVATDMAAALDESYRAELLEQIPLGR
                     FAETGEVARIACFLLSDDARYITGQVIQVDGGLAM"
     gene            complement(850..1722)
                     /gene="galU"
                     /locus_tag="VHD88_01385"
     CDS             complement(850..1722)
                     /gene="galU"
                     /locus_tag="VHD88_01385"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR01099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003983 - UTP:glucose-1-phosphate
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009225 - nucleotide-sugar metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HVS20464.1"
                     /translation="MPQRVRKAVFPAAGLGTRFLPATKASPKEMLPLVDKPLIQYVVE
                     EAVASGIESVIIVTGRGKSAIEDHFDVSFELESLLRERGKDDELKQARNISDLARVSY
                     VRQREALGLGHAILQARDLVGDEPFAVMLSDDIIDSEIPALKQLLDVYEKYDAPVVAT
                     MHVEGEAISRFGVLDVEEVEDGVYRIKDMAEKPPLAKAPSDLAIIGRYVLTPDIFDEI
                     EKTKPGAIGEIQITDAMRALLKKRDFYAVRFEGTRYDAGDKLGFLIATVELALKHPEL
                     ALGFREYLASLRTR"
     gene            1988..>2235
                     /locus_tag="VHD88_01390"
     CDS             1988..>2235
                     /locus_tag="VHD88_01390"
                     /inference="COORDINATES: protein motif:HMM:NF014458.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20465.1"
                     /translation="MLDLNYVRENLESVRVALEKRGLTSAALDDFAQADAERRRVIAE
                     SDQLNAERNTASREIGALMKAGKNEEADARRKAVNELK"
BASE COUNT          490 a          656 c          578 g          511 t
ORIGIN      
        1 agtttcaggt tccaagtttc aggtttcaag ttgttgccgc ggacctgaaa cttgaaactc
       61 aatttcacat cgccagtcca ccatccactt ggatcacctg acctgtgatg tagcgcgcgt
      121 cgtcggacag caggaaacaa gcgatgcgtg cgacttcgcc agtttcggca aagcggccga
      181 gcggaatctg ttccagaagc tccgcgcgat aactttcatc cagcgctgcc gccatgtcgg
      241 ttgcgaccat cccgagcgcg agcgcgttga cagtaacttt gcgactcgcg acttcgcgcg
      301 ccagtgcttt cgtcaagcca atcatgccgg cttttgaagc ggaataattc gattgtccgg
      361 ccatgcccac gacgccgcta atcgaagtga tgttaagaat cgagcagcct tcttcctgtc
      421 gcagcatcac gcgcaacgat gccttcgcaa aattccacgc gcccttcaag tttgtatcga
      481 caaccgcgtc ccagtcatct tccttcatac gcagaatcaa agtgtcgcgc acaatgccgg
      541 cattgttcac cagaaaatcg atgcggccaa aagcatcttt gatttgcttc accatttccg
      601 cggcggcttc tgtatttgcc acgtcacact gcgatgccag tgcgcgcacg cccagcgctt
      661 cgagctctga tttcaaagtc tcagatgcct cggcgctttt cgcaaagttg aatgcgacgt
      721 ccgcgccgcg tcgcgcgagt tccagcgcga ttgcgcgccc gatgccgcgc gtcgcgccgg
      781 tgacgattgc cgtctttcca gagaactgct tcccgacctc gctcatattc ttcggttcgt
      841 cgtaatggct tagcgtgtcc tcagactcgc gagatattcg cgaaatccta gcgccaactc
      901 cggatgcttc aaagcaagct ctaccgtagc aattaaaaac ccaagtttgt cgccggcatc
      961 gtagcgcgtt ccttcaaatc gtaccgcgta gaaatcgcgc ttcttcaaaa gcgcgcgcat
     1021 tgcatccgtg atttggattt cgccgatcgc gccaggtttc gtcttttcaa tttcgtcgaa
     1081 gatatccggc gtcaaaacat agcggccgat aatcgccaga tccgaaggcg ctttcgctag
     1141 cggaggcttt tcggccatgt ctttaattcg atagactccg tcttcgactt cttcgacatc
     1201 gagtacgccg aaccgcgaaa ttgcttcacc ttcgacgtgc atcgtggcca caacgggcgc
     1261 gtcgtatttt tcgtaaacgt caagcaattg cttgagcgcc gggatttccg agtcgatgat
     1321 gtcgtcgctg agcatcaccg cgaacggctc atcaccaacc agatcgcgcg cctgcaggat
     1381 cgcgtggcct aagccaagtg cttcacgctg gcgaacatag cttactcgcg caagatctga
     1441 tatgttgcgc gcttgtttca actcgtcatc cttaccacgc tcgcgtagca acgattcaag
     1501 ttcaaacgaa acgtcgaaat gatcttcgat ggcgctcttg ccgcggccgg tgacgatgat
     1561 caccgactcg atgcccgaag cgaccgcttc ttcgacgacg tattgaatca gaggcttgtc
     1621 gaccagcggc agcatttctt tcggcgacgc cttcgtggcc ggcagaaatc gcgtgcccag
     1681 tccggcggcg ggaaagactg ctttgcgaac tcgctgtggc atcgtttcag ttccgtttga
     1741 tgactaagct tgcgagaagt gcagcgacat tttaaccgca gagggcgcca aggtttcgca
     1801 aaggaacgca gaggattagc ctttgcgtcc ctctgcgtct tcctctgcga cctttgcggt
     1861 taagatcctt agctcagtcg cacttaagaa ttgccttgac acctcagcaa acgctcggtt
     1921 aggttcctcg cttgcgcgaa attgcaaaag caacttacag ataacacagt ttcaggactg
     1981 cggccaaatg ctcgatctca actacgtgcg ggaaaatctg gaaagcgtgc gcgtcgcgct
     2041 cgagaagcgc ggcctgacat cggcggcgct ggatgatttt gcgcaagccg acgccgagcg
     2101 ccggcgtgtg attgccgaat cggaccaact taatgccgaa cggaacactg ccagtcgcga
     2161 aatcggcgcg ctgatgaaag cgggaaagaa cgaagaagcc gacgcgcgcc gcaaagcagt
     2221 taatgaactg aaaga
//
LOCUS       DASZZE010000074         1514 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_229422, whole genome shotgun sequence.
ACCESSION   DASZZE010000074 DASZZE010000000
VERSION     DASZZE010000074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1514
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_229422"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..339
                     /locus_tag="VHD88_01395"
     CDS             <1..339
                     /locus_tag="VHD88_01395"
                     /inference="COORDINATES: protein motif:HMM:NF012412.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20466.1"
                     /translation="QAAGAGGRITIEHDVEGAFDGVEVVYAKSWGSKDFYGAPERDIA
                     ERALYRGKWIVDEAKMARTNSAIFMHCLPVRRNVIVTDGVMDSSSSAVIDEAENRLHV
                     QKAILARLLK"
     gene            425..1333
                     /gene="argB"
                     /locus_tag="VHD88_01400"
     CDS             425..1333
                     /gene="argB"
                     /locus_tag="VHD88_01400"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: protein motif:HMM:NF012899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003991 - acetylglutamate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HVS20467.1"
                     /translation="MTDTTEVGNQLRLDLLREAMPYIQRFKGKTFVVKFSGKVTEDRD
                     RLISLAEELALLYQVGIRICVVHGGGKQLTELAAQMGVAQTIIEGRRVTDDATLEMAK
                     MIFAGKINTDILAALRHRGVEAVGLSGVDGNIVHAERRPPKEIVNRETGESEHVDFGH
                     VGDILKIDTRLLTVLLDHGYLPVISSLGADSEGKVFNINADTIASEIAIQLKAEKMVV
                     LSDVDGIYLRAGEPQTKLSRLTADEAEALIKNGAATGGMVPKLQSIIELLRRGVKSAH
                     IINGTSRNALLTEVFTDEGTGTMIAA"
BASE COUNT          374 a          374 c          450 g          316 t
ORIGIN      
        1 caggcggcag gggcaggagg caggatcacg attgagcacg acgttgaagg agcttttgac
       61 ggcgtggaag ttgtgtacgc gaagagttgg ggcagcaaag acttttatgg cgcgccggaa
      121 agagatattg ccgaacgagc gctatatcgc ggcaaatgga tcgttgacga agcgaagatg
      181 gcgcgcacaa actccgcgat cttcatgcat tgtctgccgg tgcgacggaa tgtgatcgtc
      241 accgatggcg taatggattc gtcttcttca gcagtgattg atgaggcgga gaatcgattg
      301 cacgtccaaa aggcaatcct ggcaaggttg ctcaaatagt agttcacgca aaggcgtttt
      361 tgtcagtacc acctgcggta gcgggtgggt gacgatcaga aactgtaaac gaaaagaaag
      421 accaatgacc gacaccactg aagttggaaa ccaattgcgg ctagacttgc tgcgcgaggc
      481 gatgccttac attcagcgct tcaaaggcaa gacatttgtc gtgaagttct ctggcaaagt
      541 caccgaagac cgcgaccgct tgatctcgtt ggctgaagaa ctcgctttgc tttatcaagt
      601 gggaatccgc atctgcgtcg ttcatggtgg cggcaaacaa ttaacggaac tcgccgccca
      661 gatgggtgtc gcgcaaacga tcatcgaagg ccggcgcgta accgacgacg ccacgctgga
      721 aatggccaag atgatctttg ccggcaagat caatactgac attctcgcgg ctctgcgtca
      781 tcgcggagtc gaagccgtcg gactttcggg tgtcgatgga aacatcgtcc acgccgagcg
      841 ccggccaccg aaagagattg tgaatcgcga aaccggcgag agcgagcacg tggactttgg
      901 ccacgtcggc gacattctga aaattgacac gcgtctgcta actgtgttgc tggaccatgg
      961 ctatctgcca gtgatttcgt cgctcggcgc ggattcagaa ggcaaggtct ttaacatcaa
     1021 tgccgacacg atcgcttccg agattgcgat ccaactcaag gctgagaaga tggttgtgct
     1081 ttccgatgtt gatggaatct atttgcgcgc gggcgagccg cagacgaaac tttcgcggtt
     1141 gaccgcagac gaggctgagg cgctgattaa gaatggcgct gcaaccggcg ggatggttcc
     1201 gaaactgcaa agcattatcg agctgttaag acggggcgtg aagagcgcgc acatcatcaa
     1261 cggcacttcg cgcaacgccc tgttgacgga agtcttcacc gacgaaggca cgggaacaat
     1321 gatagctgcg tgagtttgga gttcatcaag ctttagcttg cccccacgga agaacagcct
     1381 gaaggctgaa acctcagcca aacggcgact cgctcgctta gatgattcgt attgtgaaga
     1441 tatgcgccca acgaagccat gcgatgcgat tgatgacttc ccagagtttg gcgcgcaact
     1501 gctcgtcatt gagc
//
LOCUS       DASZZE010000075         1514 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_147869, whole genome shotgun sequence.
ACCESSION   DASZZE010000075 DASZZE010000000
VERSION     DASZZE010000075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1514
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147869"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..183)
                     /locus_tag="VHD88_01405"
     CDS             complement(<1..183)
                     /locus_tag="VHD88_01405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20468.1"
                     /translation="MNYSVLFAGQRGFRVGVIIFSLWLVASSVSAAPCGQTNSQRDLW
                     VTQNVNVLIRAARALYE"
     gene            complement(276..>1514)
                     /locus_tag="VHD88_01410"
     CDS             complement(276..>1514)
                     /locus_tag="VHD88_01410"
                     /inference="COORDINATES: protein motif:HMM:NF027232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20469.1"
                     /translation="FRHDWTQPLVFSQADPHALYYANQFLYKTTNGGESWTQISQDLT
                     REDPGVPPNLNEAAAADAPKENRRGVIYTIAPSPLRASMIWIGTDDGLIQGTNDDGKT
                     WKNVTPPAVTSWSKVVMIEASHFDVDEAYAAVERHQLEDYEPYIYRTRDAGRTWTEIT
                     SGLPGGVYVQTVKEDPQRRGLLFAGTERAVFVSFDDGDHWKSLQLNLPPASMRDLAFH
                     DDDLIVATHGRGFWVLDDITPLRQMNSEVMTSDAFLFRPADAINITPGSDNGTPMPRD
                     EPLAENPPSGALIDYYLKREVSGPVTLEILDPSGEVIRRYANDDKNPPTDPDKLNIPA
                     FWVRTPEPLSAAAGMHRWIWDLRPTPPQRPAGGGGGGGGGFGGRGVSAVLPGTYTVKL
                     TAGGKSYTQPLVVKMDPRAK"
BASE COUNT          301 a          465 c          433 g          315 t
ORIGIN      
        1 ttcataaaga gcgcgcgccg cccgaatcag cacattaacg ttctgtgtga cccacagatc
       61 ccgttgagag ttcgtttggc cgcacggcgc agccgacacg ctcgatgcga caagccacaa
      121 ggagaagata atcacgccca cgcggaatcc gcgctggccg gcgaataaga cagaatagtt
      181 catcagcttc aatgcgaagg ctttcacagt actatcgttt gggcagtgtc ttagtttgcg
      241 actgacctca tcccccaaag taagacatcg cttgctcact tcgctcttgg atccatcttc
      301 acgaccaacg gttgcgtgta gcttttgcca cccgcagtca gcttcaccgt gtacgttccg
      361 ggcagcacgg cggaaacacc gcgacctccg aagccaccgc cgccgccgcc gcctcctcct
      421 gcgggtcgct gaggcggagt cggacgcaga tcccaaatcc atcgatgcat gcccgccgcg
      481 gccgaaagcg gttcaggggt gcgcacccag aacgcaggaa tgttgagctt gtccggatcg
      541 gttggcgggt tcttgtcatc attggcgtaa cgacgaatca cttcgcccga tggatcgaga
      601 atctcaagcg tgaccggccc tgaaacctct cgcttcaaat agtaatcaat cagcgctccg
      661 gatggcggat tctcggccag aggttcgtcg cgcggcatgg gcgtgccgtt gtcgctgccg
      721 ggcgtaatgt tgatcgcatc cgccgggcga aatagaaacg cgtcgctggt catgacctcg
      781 ctgttcatct gtcgcagtgg ggtgatgtcg tcaagcaccc aaaaaccgcg gccgtgtgtg
      841 gccacgatca gatcgtcatc atgaaacgcg agatcgcgca tcgatgccgg cggcaggttg
      901 agttgcaaag acttccagtg atcgccgtcg tcaaacgaaa cgaagaccgc gcgctcggtg
      961 ccggcgaata gcaacccgcg ccgttgcgga tcttctttca cggtttgcac gtaaacgccg
     1021 cccggcaatc cgctcgtgat ttcagtccac gtcctacccg cgtcgcgcgt gcgatagatg
     1081 tacggctcgt aatcttcgag ctgatgccgc tcaaccgccg cgtaagcttc gtcgacatca
     1141 aagtgcgacg cttcgatcat cacaaccttg ctccaagaag tcacggccgg tggcgtcacg
     1201 ttcttccagg tcttgccatc gtcattcgtt ccctggatca ggccgtcgtc ggtgccgatc
     1261 caaatcatcg acgcgcgcag aggcgagggc gcaatcgtgt agatcacgcc gcgccggttc
     1321 tctttcggcg cgtcggcggc agcagcttcg ttcaagttcg gcggcactcc cggatcttca
     1381 cgcgtcaggt cctggctgat ctgcgtccaa ctctcgccac cgttagtcgt tttgtagaga
     1441 aactggttcg cgtaatagag cgcgtgcgga tcggcttgcg agaagacgag cggttgcgtc
     1501 cagtcgtgac ggaa
//
LOCUS       DASZZE010000076         1609 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_132932, whole genome shotgun sequence.
ACCESSION   DASZZE010000076 DASZZE010000000
VERSION     DASZZE010000076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1609)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1609)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1609
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_132932"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..240
                     /locus_tag="VHD88_01415"
     CDS             <1..240
                     /locus_tag="VHD88_01415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20470.1"
                     /translation="DSRHEPSKQDLQLHEWLEHHQKPHLIVATKSDKLSNNELRKNMD
                     RMRRALDTDRVLDYSAVNGNGRDEVWGAIEASLRG"
     gene            598..>1609
                     /gene="rho"
                     /locus_tag="VHD88_01420"
     CDS             598..>1609
                     /gene="rho"
                     /locus_tag="VHD88_01420"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF006886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008186 - ATP-dependent activity, acting
                     on RNA [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HVS20471.1"
                     /translation="MANKRRTNNGGSNEDGGGVATAEAPAESPRNQDGREEVFNLSTL
                     KDLSISALTQIAKTMDVPGATGMRKQELIFKVLAAQTEKSGLIFSEGVLETLPDGFGF
                     LRAPEYNYLPGPDDIYVSPSQIRKFDLRTGDTISGQIRPPKEGERYFALIKVEAINFE
                     SPDHAREKVFFDNLTPLYPDEMLKMEVGPENLSARVIDLVTPLGKGQRGLIVSPPRTG
                     KTMLLQAIANSVTQNHPEVTLIVLLIDERPEEVTDMQRSVQGEVISSTFDEPPTRHVQ
                     VADMVIEKAKRLVEHKRDVVILLDSITRLARAHNAVVPPSGKILSGGIDSNALQRPKR
                     FFG"
BASE COUNT          406 a          448 c          438 g          317 t
ORIGIN      
        1 gattcgcgtc acgaaccctc gaaacaggac ttgcagcttc acgagtggct cgagcatcat
       61 caaaagccac acttgattgt cgccacgaaa tccgacaagc tttcgaacaa tgaattgcgc
      121 aagaatatgg atcgcatgag gcgcgcgctt gatactgatc gcgtgctcga ttattcagcg
      181 gtcaacggaa acgggcgaga tgaagtgtgg ggcgcaatcg aagcgtcgct gagaggttaa
      241 agctttgagc gactcttagt ccttgcgatt tttgggcatt agtttagaat taagaattcc
      301 tgaatcgaaa cagcaaagag agaaaaagct aagcacgtca tcagacttgg ttgaatctga
      361 catctaagcc gagaccacgc atatcccgcc agccggcatc caaacaagcg cgaataaacc
      421 tctggcggca aactcggtta caggtcagtc atcgcggcag gaagccccca cacgagcttc
      481 tctgtgaccc gcgaggaaac tttccctttg accggcatca ttgaaaatca attggcagga
      541 tgctgaaact tgacaccacc gcgcggcgca tctttggctg cgcacgaaag aactgatatg
      601 gcaaacaaaa gacgcacgaa caatggcggc agcaacgaag acggtggcgg cgtagccaca
      661 gctgaagccc cggcggaatc gcccagaaac caggacggcc gggaagaagt tttcaatctg
      721 tccacgctga aagacctatc gatctccgcg ctcacgcaga tcgcgaaaac gatggatgta
      781 cccggcgcta ccggaatgcg caagcaagaa ctgatcttta aggtcctcgc ggcgcaaacc
      841 gaaaagagcg gactgatttt ttccgagggt gtgctggaaa cgctgcccga tggcttcggt
      901 tttctccgtg cgcccgaata caactatctg cccggcccgg atgatattta cgtctcgcct
      961 tcgcagattc gcaagttcga tttgcgcacc ggcgacacaa tcagcggaca gattcgaccg
     1021 ccgaaagaag gcgaacgcta cttcgcgctg attaaagtcg aggcgatcaa tttcgagtcg
     1081 cctgatcacg cgcgcgaaaa agttttcttt gacaacctga cacccctcta tcccgatgag
     1141 atgctgaaaa tggaagtcgg tcccgagaat ctttcggcgc gagttatcga tctcgtcacg
     1201 ccgctcggca agggccagcg cggcttgatc gtgtcgccgc cacgcacagg caaaacgatg
     1261 ttgctgcagg ccatcgctaa ttcggtcacg cagaaccatc cggaagtaac tctgatcgtg
     1321 ctgctgatcg acgagcgccc cgaagaagtc acggacatgc agcgttcggt tcagggcgag
     1381 gtaatctcgt caaccttcga cgagccgccg acccgtcacg tgcaggttgc cgacatggtg
     1441 atcgaaaagg ccaagcgcct cgttgagcac aaacgcgacg tcgtgattct gcttgattcg
     1501 atcacgcgtc tggcgcgcgc gcacaacgcg gtcgtgccgc ccagcggcaa gattctttcg
     1561 ggcggtatcg attcaaacgc gctgcagcgt ccaaagcgat tttttggcg
//
LOCUS       DASZZE010000077         2053 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_2088, whole genome shotgun sequence.
ACCESSION   DASZZE010000077 DASZZE010000000
VERSION     DASZZE010000077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2053)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2053)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2053
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2088"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..973)
                     /gene="radA"
                     /locus_tag="VHD88_01425"
     CDS             complement(<1..973)
                     /gene="radA"
                     /locus_tag="VHD88_01425"
                     /inference="COORDINATES: protein motif:HMM:TIGR00416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HVS20472.1"
                     /translation="MPKSNTTFICQSCGFQSRKWLGKCPECGEWNSLVEERVVTTKKG
                     AGRNGFRLREPKAVAYTEIESQDDVRISSGVTEFDRVLGGGIVPGTLVLLGGDPGIGK
                     STLLLQVADKLSATGVIVLYVSGEESERQIKLRGERLRVDAPNLLLLPETNLENIFRE
                     IERLKPGAIIVDSIQTTFSSDIESAPGSISQIREVAAQFLMLAKTRGIPVFLIGHVTK
                     EGSIAGPRALEHIVDTVLYFEGERHHNHRIVRATKNRFGAANEVGIFEMTSTGLRPVA
                     NPSQMFLAERPAEAAGSVVTACMEGTRPMLVEIQALVSSSKYGTGRRM"
     gene            complement(1113..1412)
                     /locus_tag="VHD88_01430"
     CDS             complement(1113..1412)
                     /locus_tag="VHD88_01430"
                     /inference="COORDINATES: protein motif:HMM:NF015893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC/Spx/MgsR family protein"
                     /protein_id="HVS20473.1"
                     /translation="MDKLLRESGVAFEKVNYYLAPLGEKKLRELIKKLGIKPRELLRI
                     SEPIYRELGLGKKDLSDDQIVALMVKHPDLIQRPIVERGARAVLGRPTESVKALL"
     gene            complement(1562..>2053)
                     /locus_tag="VHD88_01435"
     CDS             complement(1562..>2053)
                     /locus_tag="VHD88_01435"
                     /inference="COORDINATES: protein motif:HMM:NF012434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate dehydrogenase"
                     /protein_id="HVS20474.1"
                     /translation="DIQAALKHKEETGALYGLENAKEIAPNDVLEVDCDILCPSALEN
                     SITMANVGRVKAKIIAELANGPTTPGADRVFEDEGVLLIPDILANAGGVTVSYYEWVQ
                     DQYSFFWTEKRINQTLEDTMGDAFNKVHQTAQRYGTDMRTGAYILAIDRVAEATRVRG
                     IFP"
BASE COUNT          423 a          616 c          549 g          465 t
ORIGIN      
        1 tcatgcgccg gccggttccg tatttcgaac tcgaaaccag cgcttgaatt tccaccagca
       61 tgggccgcgt accttccatg caggcggtaa cgacggaacc agcagcttca gccggacgct
      121 cagccagaaa catctgtgaa ggattcgcca cgggccggag acccgtactg gtcatctcaa
      181 agatgccgac ttcattcgcg gcgccaaagc gattcttggt cgcgcgcacg atgcgatgat
      241 tgtgatggcg ctcgccttca aagtagagca cggtgtcaac gatgtgctcc aacgcgcgcg
      301 gcccggcgat cgagccttcc ttggtcacgt ggccgatcag aaagacggga ataccgcgcg
      361 tctttgccaa catcaggaac tgcgcggcga cttcgcgaat ctgcgagatc gatccgggcg
      421 ctgattcaat gtcagaagaa aaagttgttt gaatggagtc gacgatgatc gccccgggtt
      481 tcagtcgttc gatttcgcga aagatatttt ccagattggt ttcgggcaga agcagaaggt
      541 tgggcgcgtc gactcttaac ctttcaccac gcaacttgat ctgtctttcc gattcttcgc
      601 cggaaacgta aaggacgatc acgccggtcg cgctaagctt gtcggccacc tgcaacagca
      661 gcgtgctctt gccgattccc ggatcgccgc cgagtaagac cagggtaccg ggaacgattc
      721 ccccacccag cacccggtcg aattccgtca cgccggaaga gatgcgcaca tcatcctgcg
      781 attcgatttc ggtataggcc acggccttcg gttcacgcag acggaatcca ttgcggcccg
      841 cgcccttctt cgtcgtgacg acccgttctt cgaccaggga attccactcg ccgcattccg
      901 ggcatttgcc gagccacttg cgcgattgaa agccgcaact ctggcaaatg aaagttgtat
      961 ttgattttgg caaagtaccg agttcgggac tgcgcttaaa tttggagtgc ggtagcaagc
     1021 gcagcgcaac accgctttgg attaactaag gaagcgcgcg atgaaaagcc aaagcgccgt
     1081 cgccgcttcg ctctgccggc gcactccaaa tttcaaagca acgccttcac actttccgtt
     1141 ggccgcccca gcactgcacg ggcgccgcgc tcgacaatgg gccgctggat caagtcagga
     1201 tgcttaacca tcagcgcgac gatctgatca tcgctcaagt ctttcttacc caaaccaagt
     1261 tcgcgataga tcggttcgct gatccgcaag agctcgcgcg gcttgatgcc caacttcttg
     1321 attagctcgc gcaatttctt ctcgcccaag ggcgcgagat agtagttcac tttctcaaac
     1381 gcgacgccgc tctcacggag cagcttgtcc atttcgcgac acttggttca agtgggcttt
     1441 tcgtagacgg tgatcttgtc tgacatctag tttggagtgc ggtgacttgt caccgccttg
     1501 ttcctcatcc tgtattagcg aactaagaaa agcggcgaca agtcgccgca ctccaaaatt
     1561 cttacgggaa tatcccgcgc acccgcgtcg cttccgccac gcggtcgatt gccaggatgt
     1621 aagcgccagt gcgcatgtcg gtgccatagc gctgcgccgt ctggtgcacc ttgttgaaag
     1681 catcacccat agtgtcttcc agcgtctggt tgattcgctt ctcagtccag aaaaacgagt
     1741 actgatcctg cacccattcg taatagctga ccgtcacgcc gccggcgttg gccaggatgt
     1801 cgggaatcag caggacgccc tcgtcttcaa acacgcggtc cgcgcccgga gttgtcggac
     1861 cgttggccag ctccgcgatg atcttggctt tcactcgtcc aacatttgcc atcgtgatgc
     1921 tgttttcgag cgccgaaggg caaaggatgt cgcaatcaac ttcgagcacg tcattgggcg
     1981 cgatctcttt cgcgttctcc aggccataca gcgcgccggt ttcttctttg tgtttcagcg
     2041 ccgcctggat atc
//
LOCUS       DASZZE010000078        15227 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_164654, whole genome shotgun sequence.
ACCESSION   DASZZE010000078 DASZZE010000000
VERSION     DASZZE010000078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 15227)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15227)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15227
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_164654"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..732)
                     /locus_tag="VHD88_01440"
     CDS             complement(<1..732)
                     /locus_tag="VHD88_01440"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HVS20475.1"
                     /translation="MSNVLEIIPLGGIGEFGMNCTLMRFGDEMIVVDAGMGFPEESVY
                     GVDISIPDFDILEEFRDHITAIILTHGHEDHLGALPYILKKFNVPVYASRFTLGLAEY
                     KLEEHGILGDVMLHRVEPRDVVTIGSFTIEFIRASHSLIDCFSLAIKTPVGTIIHTGD
                     YKVDETPVIGEAIDLRTLRRYGQEGVLALLSDSTNATVPGRTPSERAVIPAFEEIFAE
                     ARGRIIVAAFASSIHRLQIVLDVAQQ"
     gene            883..1341
                     /locus_tag="VHD88_01445"
     CDS             883..1341
                     /locus_tag="VHD88_01445"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HVS20476.1"
                     /translation="MPDMLVNLLKLPSLDRLNDEGVSIRRAQPFEIAPVREFIEKNFS
                     VSWADEISVGFANKPVTVVIATRDGRVIGFAGYECTRRSFFGPTGVAGNERGRGIGTA
                     LLIASLWGLRELGYVYGIVGGAGSTDFYERTVGAIVIPDSKPGIYSDLLK"
     gene            complement(1484..2290)
                     /gene="rsmA"
                     /locus_tag="VHD88_01450"
     CDS             complement(1484..2290)
                     /gene="rsmA"
                     /locus_tag="VHD88_01450"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: protein motif:HMM:TIGR00755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000179 - rRNA
                     (adenine-N6,N6-)-dimethyltransferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HVS20477.1"
                     /translation="MSAAKRRFGQNFLVDRGVVDRIVKAVHPRSGETIIEIGPGRGAL
                     TSCLVEKAERVVAIEFDHDLASRLREEFAGVANLKLIEADALTTDFCSAIEPAQGARV
                     VANLPYNIATAILQRLIEQRNCLTDMTLMLQREVADRITAEAGSSERGFLSVFVEAYC
                     ETEKLFDVPPQAFRPVPKVWSTVVRLRVRPRIAAAVKDEELLWKLVSTGFAYPRKTIL
                     NNLREAPSSIQELLTKRGGASIVLCDAGIPPLRRAETLELEEWAMLVNSI"
     gene            complement(2312..3454)
                     /gene="ribD"
                     /locus_tag="VHD88_01455"
     CDS             complement(2312..3454)
                     /gene="ribD"
                     /locus_tag="VHD88_01455"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: protein motif:HMM:TIGR00326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA];
                     GO_function: GO:0008835 -
                     diaminohydroxyphosphoribosylaminopyrimidine deaminase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HVS20478.1"
                     /translation="MTPDNRLTTPDFDKQMTRRALELAARGIGLTSPGPLVGCLIVDD
                     NCAVVGEGSYDFENVSHAETIALAQAGARARGATAYISLEPHAHHGRTPPCTNALIDA
                     GIKRVVAPIEDPNPKVSGRGFAHLRKVGVEICDGVMADEAARLNEAYIHFMRTGRPFV
                     HLKLAVSLDGKIATRTGDSRWIAGEQARARAHELRHQYDSILIGSETLLADNPLLTDR
                     SGRPRRRPLVRVILDDRLRLPSDYQLSQTAREVPVLLFTSSDAESSSDLKQLGVEMLR
                     IEGGARDLVAMLNELGKREIQSVLVEGGGTVAGALLDAELVNKVTFFIAPMIIGGLNA
                     PTAVAGIGASRIKDAFQLEDVEVSQRGRDFEITGYPKSVPPAVAGG"
     gene            complement(3533..3946)
                     /locus_tag="VHD88_01460"
     CDS             complement(3533..3946)
                     /locus_tag="VHD88_01460"
                     /inference="COORDINATES: protein motif:HMM:NF024252.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HVS20479.1"
                     /translation="MTKKSGVNTAELGGAVRRRREQHGLSLRDVAEETGVSASTLSRI
                     ENGTGKPDADNIARLATWLDMPIERVMHHGNRSASDPKPVVYYPHESMPEIVEAHLRA
                     DRQLTPETAKALSELFRVAYAQFSRTGEKTSRKRG"
     gene            complement(4107..5837)
                     /locus_tag="VHD88_01465"
     CDS             complement(4107..5837)
                     /locus_tag="VHD88_01465"
                     /inference="COORDINATES: protein motif:HMM:TIGR00225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HVS20480.1"
                     /translation="MKNKFSLALVALIILALSLPVFVLAQRRRDQSNSSAGTSTTKSG
                     PPTSAPNRRPRVRTPGNPTAAVEQDFSEALSVIQDHYIDGNKLDYNGVYKSSIMGMLR
                     TLDPHSNYFDKEEFDEMRTEQRSEYFGIGASIQNYAIGDSVDTYITATFQNSPAARGG
                     LRYGDRIDAVDGVSMHAKPTADVRDKIRGPRGSQVKVTITHAGSGKTDVVDIVRDAVP
                     QPSVPDAYMIRPGVGYIDMTRGFNYDTAEGLQAALEFLHSRGMTSLVLDLRNNGGGFL
                     EQANNVAGAFLPAGELILTQKGRNGKNDNEYRSKNRDPDRTPLVILVNDYTASASEIV
                     AGAMQDHDRAMIVGQTTFGKGLVQTIHTLESGAGLTLTSAKYYTPSGRLIQRDYSNGD
                     YYNYIYRGGTLRNGNEQGKPAGPASRTDTGRPVYGGGGITPDEIVKQPRLTTMELRLR
                     QSIFFFARDLATGRVAGFDKYTVDRPIEFGHDIEAADFPMSEAVFKAFSDHVAKDPNW
                     KTLVPQLDRNRSFIESWLRYQLATAAYGSVTALQVLMKDDPQVAKAIDVTPRARDLAM
                     AAMRARNQQP"
     gene            complement(5987..7294)
                     /locus_tag="VHD88_01470"
     CDS             complement(5987..7294)
                     /locus_tag="VHD88_01470"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HVS20481.1"
                     /translation="MRVTLRVLAGPYSGREFAFDHHDTFLIGRSDSAHLYLPEDKFFS
                     RHHCLLEIAPPRCFLRDLGSTNGTFVNGQRVPEAHLRSGDRIQGGQTVLEVEVQVDQA
                     VTAAVSGAEAPTLTKPSVVMVLCANCGRPDRAEASVPNEAMSFLCEECREELRRQPAP
                     VPGYEMIKVLGRGGMGCVMLARDEKSGREVAIKTLLPEVAVTEQSLKRFMREIEVAAA
                     LDHPNIVRFIKSGTNNGAVYLVTEYVEGSDAARLADAKGGRLPFREAIDIVAQSLDAL
                     AYAHGKGYIHRDIKESNILISGAAPNLNAKLTDFGLAKSFTQAGMSGITMAGDMAGTF
                     AYMPPEQIKDFRNVRPASDIYAIGMTAYSLLAGDTALNVDPEQGMAGTVRAIFESPII
                     PLLTRAPDVPDRVAEVIERALAKDPEQRWKTAAAMRTALMHAA"
     gene            complement(7305..8327)
                     /locus_tag="VHD88_01475"
     CDS             complement(7305..8327)
                     /locus_tag="VHD88_01475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20482.1"
                     /translation="MKRCPQCNRTYTDDALSFCLDDGSPLQSVSAPSSLDPSATVQYP
                     QARDTSPQPTIAYNPSQMPAPPAPPPAWTPMPPPQTQKRSVWPWILGIGAVLVFMGIG
                     VVILIFAVASVTNDNNRAANNSNNANWRSANRNSNTNSNLNTNTNTNTNTDTRSNLSS
                     FTDDFSTQDWAIGNWADGKAWYQDDEYHMHAISARFIEMYAPDKKEYNTENATVRVGL
                     RSIDGNSPSTGYGLVVHGEKKDGKLEDYGFLLFTGEDPKYKIILHKGGAETNLVSWTS
                     SSVIRTGTSPNQIEVRIRDLKMDLYINGQFITSITDSAGYRRGRVGFYTSDVGEVAFD
                     DLEISK"
     gene            complement(8711..10369)
                     /locus_tag="VHD88_01480"
     CDS             complement(8711..10369)
                     /locus_tag="VHD88_01480"
                     /inference="COORDINATES: protein motif:HMM:NF019334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HVS20483.1"
                     /translation="MRECPRCERCFEDDASLCPDDQSKTKMTLPGTTLLNARYRLEKR
                     LGRGAMGQVYLARDENLLTRRVAVKTIRPDVLSDEDLQEGEAIARFEREARTAASIQH
                     PNVIDVTDFGKSDEGVFFLVMEYVEGESLYQLLRREGTLTVQRSLAMLRQISAGVEAA
                     HDEGILHRDLKPANVFIVQRKKKDVTIAGDDIVKVGDFGLAKIISQSLSGLTSGSGPA
                     SRGILGTPEYMAPEQMQTGVALDARADVYALGAIAYHMLGGRPPFTGDIMQIFAQKLT
                     QDAPPLNTLRSDIPTTVEKSVMHALAKEADQRPPTVASWFTEFDDAVNSASKIEDEGE
                     SRLVIMAPTGAEVYVDDERHGSIGRSGRVILKSIPPGQHVLRVAHAGDEDDERVIEIR
                     PDADEQIIQAQFKSAPSSGLSPSQGGSLGSVSGVTLSAPGVVACTKCSARFAAGTKFC
                     GRCGNTTFREVTSDVHQPARQPAVSPSSLNQPPVAGLSNKIKCSRCGMEQPAGTKFCG
                     RCGASLGGSEIAWKAPRPVEALCPTCNTSYPSGTKFCGRCGRTL"
     gene            10439..11485
                     /locus_tag="VHD88_01485"
     CDS             10439..11485
                     /locus_tag="VHD88_01485"
                     /inference="COORDINATES: protein motif:HMM:TIGR02772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0045027 - DNA end binding [Evidence IEA];
                     GO_process: GO:0006303 - double-strand break repair via
                     nonhomologous end joining [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ku protein"
                     /protein_id="HVS20484.1"
                     /translation="MNDGSTGIRRWEGLRNKCLYLMGQLAHNSLPSPWMGRGRAVRRL
                     ENAGAMPAFVSKEDPMRSIWKGHIRFLFVAIPVRVYNAIEASEKIQFNQLHREDFGPI
                     GYDKRCKKCGQVVTNEEITKGYQYESDRYAIVEPEEIAKVKIKTNKAVDIMGFVDASE
                     IPTTFYDAPYYAGPDGPVSEKPYALLRQVLKDTGKVGLAKVVLRDREDLVAVFPHENG
                     IVLQKLHYPAEIRSMKDVPELDGAQKLDKKELGLATNLVEQMVTSFADIDTVDHYHEA
                     MRKLIDSKIKGKKVTEFEKIEEVPHLDIMTALKKSLQASTRKPMVKAATAIKKKAALT
                     LVKAKPAARKRKVG"
     gene            11877..14990
                     /locus_tag="VHD88_01490"
     CDS             11877..14990
                     /locus_tag="VHD88_01490"
                     /inference="COORDINATES: protein motif:HMM:NF027232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20485.1"
                     /translation="MTCFGRKALYSLVVVLIVLLTTANAFAQQYNPDLFSGMKWRLIG
                     PHRSGRVSAVAGIASKPNIYYFGAPGGGVWKTTDGGRVWKPIFDDAHVASIGAIAIAP
                     SNPNVIYVGTGEETAGNGIYKSTDAGATWVNVGLRETRYITSIIVSPRNPDVVLVSVR
                     DYFVPGPERGVFKTSDGGKTWNKVLFKDDKTSVVDMRAAPDDSRMIYAATYNLQIDPN
                     NRRALGSISQIYKSTDEGTTWQQLSGAGLPETGRGSIGLAVSPTTEGKRVYALLNSGL
                     FRSDDGGANWQRSTSDPRILGNNSLARTYVDPGDPNVVYVMQTSMYRSTDGGKTFDAF
                     KGAPSGEDQRVLWIAPDDSQRMLLGSDQGAIVSVDGGHTWTDWFTQPTGQFYHIITDN
                     AFPYRLYAAQQDSGSVAVASRSDFGMITYRDWFSTGAFESGYIAPDPAKLNLIYSVGW
                     YGSVFRLDRTTGQISTVFAPGARYRYTWETPLIFSPRDPKTLYVGMQYVLKSSDGAQT
                     WAEISPDLTEKTPSPNSQGVIQTIAPSAAQASEIWVGTSTGIVQLTRDDGASWNNVTP
                     PELSERSNVTLIEASPVDADTAYVIAAARGDSHPYIYRTRDTGKSWQKIVTGLPDAGI
                     ARVVREDPARKGLIYAGTETGAHVSFDGGDHWQPLQLNLPTTSVRDLTVHGNDLVVAT
                     YGRGLWILDDLSPLRQIQDETRASNYLYKPATALRVRWDNHPDTPLPADTPHGENPPE
                     GAIIYYYLRAAVKEVALEIRDERGNIVRSFSSKPMPPDRTPKNVPDYWFAPPEVLTTQ
                     AGLNRFVWNLEWPHPDTLPYSFYGRHLDYIEYTLPDHAVAGKTPINQPPGPLAVPGRY
                     EVVLTVDGQTYRQPLIVALDPRVHVSAGDLEAQLDLAKQIDSWMNISYRSYNDVAALR
                     AALAAAQKSLAANSQAKETTDAAQALEKELGEIQDGTNTAPGFGSVNRDVARFVTMIQ
                     SGDLRPAKSIIENAAPSCDALKNDLVRWRKINAETLPALNSLLKQNKLAPLAIVTVAK
                     DPVCPNR"
     gene            15016..>15227
                     /locus_tag="VHD88_01495"
     CDS             15016..>15227
                     /locus_tag="VHD88_01495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20486.1"
                     /translation="MKTVGIIGGIGPESTIEYYRGIIAAYRERQTDGSYPSIIINSIN
                     LTILLGLIIASELDKATDHLVNEVQK"
BASE COUNT         3275 a         4363 c         4329 g         3260 t
ORIGIN      
        1 ctgctgggcg acgtcaagaa cgatttgcag gcgatgaatc gaagaagcga acgcggcgac
       61 gatgatacgg ccgcgcgctt cggcaaagat ttcttcaaag gccggaatca cagcgcgttc
      121 cgatggcgtg cggcccggaa cagtcgcgtt cgtggaatcc gaaagcaacg ccagcacgcc
      181 ttcctgtccg tatcggcgga gggttcgtag atcaatcgcc tcgccgatga ccggcgtttc
      241 gtcaaccttg taatcgccgg tgtgaatgat cgtgccgacg ggtgttttga tcgctaacga
      301 gaagcaatca atcaacgaat gtgacgcgcg aatgaattca atcgtgaacg agccgattgt
      361 cacaacgtcg cgcggctcga cgcgatgcaa cattacatcg ccgagaatac cgtgctcttc
      421 taatttgtat tccgccaacc caagcgtgaa acgcgacgcg taaaccggca cgttgaactt
      481 cttcaggatg taaggcagcg cgcccagatg atcttcgtgg ccgtgcgtga gaatgatcgc
      541 cgtgatgtgg tcgcggaact cttcgaggat atcgaaatcg ggaatggaaa tatcgacgcc
      601 atagacgctt tcttccggaa agcccatgcc cgcatcgacg acgatcatct cgtcgccaaa
      661 gcgcatgagc gtgcaattca tcccaaactc gccgatgccg ccgaggggaa tgatttctag
      721 gacgttgctc acgtggttgt cttaatctga attgccagcc ggggcagcca agataatgac
      781 tatattcgca gggacacgcg aagcggcaag tataacacag agcggcgcat ttcttcttcg
      841 tcgtcgcttg cgttatcaat gaggatttaa tagcttgcca taatgcccga catgctcgtc
      901 aacctgctga agctgccctc gctcgatcga ttgaatgacg agggcgtcag cattcgtcgc
      961 gcgcaaccat tcgagatcgc accggtgcgc gaattcatcg agaaaaactt ttccgtctca
     1021 tgggctgacg aaatttcagt cgggtttgcg aataaaccgg taacggtcgt catcgctacc
     1081 cgcgatggtc gcgtgatcgg cttcgccggg tatgaatgca cgcgccgtag cttctttggt
     1141 ccgaccggtg tcgcgggaaa tgaacgcggg cgcggcatcg gtacggcgtt gctgattgcg
     1201 tcactctggg gattgcgcga actcggttac gtttatggaa tcgtcggcgg cgccgggtca
     1261 acggatttct atgaacgcac ggtcggcgcg attgtgattc cggatagcaa gccgggaatt
     1321 tattcggacc ttttgaagtg agcttagcgc aacgggcatt tcaacgcaga gggcgcaaag
     1381 gtgttgacag aggaacgcag agcaacaact tctctgcgtg ctttgcctga ccctctgcga
     1441 ttctctgcgt tgagagatga ctatcggtcc tcagacgaac gagtcagatt gagtttacga
     1501 gcatggccca ctcttccagc tccaaagttt ccgcgcgtcg cagtggtgga attcccgcgt
     1561 cacacagcac gatgctcgcg ccgcctcgtt tcgttagtaa ctcttgaata gatgagggcg
     1621 cttcgcgcaa gttgttgagg atcgttttgc gaggataagc gaagcccgtg ctcacgagtt
     1681 tccatagaag ttcttcgtct ttcacagccg ccgcgatgcg cggacgcacg cgcaaacgca
     1741 cgacggtgct ccagactttc ggcactggtc gaaatgcttg tggcgggaca tcaaagagtt
     1801 tttccgtttc gcaataggct tcgacaaata ctgagagaaa gccacgctcg ctcgaaccgg
     1861 cttccgcggt gattcgatcc gcaacctcgc gttgcagcat cagggtcatg tcagtgaggc
     1921 agtttctttg ctcgatcagt ctttgcaaaa ttgcggtggc gatgttgtaa ggaagattgg
     1981 cgacgacgcg cgcgccttgg gctggttcga tcgcgctgca aaaatcagtc gtcaaggcgt
     2041 cagcttcaat cagttttaga ttcgcgacgc ctgcgaactc ttcgcgcaaa cgcgaagcaa
     2101 gatcgtggtc aaactcgatt gcgacaacgc gttcggcttt ctcaaccagg catgaagtca
     2161 aagcacctcg gccggggcca atctcgatga ttgtttcgcc agagcgcggg tgaacggctt
     2221 tgacgattcg atcgacgacg ccgcgatcga cgagaaagtt ctgaccgaaa cggcgtttgg
     2281 ctgcgctcat ccgttacaag ttaaggaggt ctcacccgcc tgctaccgca ggcggtactg
     2341 actttggata gccggtgatt tcaaagtcac gaccgcgttg acttacttca acgtcttcaa
     2401 gctgaaaggc gtctttgatt cgactggcgc ctatgcccgc aacggcggtc ggtgcgttca
     2461 aaccaccgat gatcattggc gcgatgaaga aagtgacttt gttaacgagt tcggcatcca
     2521 gcaacgcgcc ggccacagtt ccgccgcctt cgaccagcac gctttgaatc tcgcgcttgc
     2581 caagttcatt caacatcgca acgagatctc gtgccccgcc ttcaatgcga agcatctcca
     2641 cgccgagctg cttcagatca gacgacgatt cggcgtcgct ggaagtgaat aacagaacgg
     2701 gcacctcgcg cgccgtttgc gatagctggt agtcactggg caaacgcagc ctatcatcaa
     2761 gtatgactcg cacgagtggc ctgcgccggg gccgaccgga acgatcagtc agcaatggat
     2821 tatcagcaag aagagtttcc gaaccaataa gaattgaatc gtactgatgc cgcaattcgt
     2881 gcgcgcgggc gcgtgcttgt tcgccggcaa tccagcgcga gtcgccggtt cgcgtcgcga
     2941 tctttccatc gagcgacacg gcaagcttaa gatgaacgaa cgggcgtccg gtgcgcatga
     3001 aatgaatgta ggcttcattt agtcgcgcag cttcatcagc catcacacca tcgcaaattt
     3061 cgacgccgac tttgcgcaga tgagcaaagc cgcggccgga cactttcgga ttaggatctt
     3121 cgataggagc cacgacgcgc ttgattccgg cgtcgatcaa cgcgttggtg cacggcggcg
     3181 tgcgaccatg atgcgcgtgc ggctccagag aaatgtaagc ggtcgcgccg cgtgcgcgcg
     3241 cgcctgcttg cgccagtgcg atggtctcag cgtggctcac gttctcaaaa tcgtaagagc
     3301 cttcgcccac caccgcacag ttgtcatcga cgatcaagca accaaccagc ggccctggac
     3361 tcgtcagccc gatgccgcgc gccgcaagtt ccagcgcgcg tcgcgtcatc tgcttatcaa
     3421 agtccggagt cgtgagcctg ttgtctggag tcaaaatgct ggactcggtt tcagtcgtgg
     3481 attgatttgt gcaagcagga gtttgccaca gagcgacgac cgaggtcgag aattaaccgc
     3541 gcttgcgcga tgtcttctct ccggtccggc taaactgcgc ataggcaacg cgaaagagtt
     3601 ctgagagagc cttcgcggtt tccggcgtca gttgccgatc ggcgcgcaag tgggcctcga
     3661 cgatctcggg cattgattcg tgcggataat aaacaacggg tttcggatcc gatgcgctgc
     3721 gattgccgtg atgcatgacg cgctcgatcg gcatgtcgag ccatgtcgcc aggcgcgcga
     3781 tgttgtcggc gtctggtttg ccggtcccgt tttcgatgcg cgaaagcgta gacgccgaaa
     3841 cgcctgtttc ttcagccacg tcacgcagac tcaagccatg ttgttcgcgc cggcgacgca
     3901 ccgcgccgcc cagctccgcc gtgttgactc cacttttctt tgtcatggtg cacagcttac
     3961 cactatgtga gttttagctg caagactgtg ttttatcgtc gcaacacgct gggagcgcgg
     4021 gcatcctgcc cgcactgagc gcgaagcgcg aaaaacatga ggcgggcaat gcccgcctct
     4081 gaatttgccg aatggtgttc gcaagattaa ggctgctgat tgcgcgcccg catcgccgcc
     4141 atagccagat cgcgcgcgcg cggcgtgacg tcgatggcct tggccacttg cggatcatct
     4201 ttcatcaaca cctgcagggc cgttaccgaa ccgtaagcgg ccgtggccaa ctggtatcgc
     4261 aaccagcttt cgataaacga acggttacga tcgagctgtg gcaccaaagt cttccagttc
     4321 ggatccttcg cgacatgatc gctgaacgct ttgaagactg cttcgctcat cgggaaatca
     4381 gcagcctcaa tgtcgtgtcc gaactctatc gggcgatcaa ccgtgtactt gtcaaatccc
     4441 gccacgcgtc cagtcgccag gtcacgggca aagaaaaaga tcgactggcg caagcgcaat
     4501 tccatcgtgg tgagccgcgg ttgcttcaca atttcatccg gcgtgattcc gccgccgccg
     4561 taaacgggtc ttccggtgtc ggtgcgactg gcgggtccgg cgggcttgcc ctgctcgttg
     4621 ccgttcctca gcgtgccgcc gcgatagatg tagttatagt agtcgccgtt ggaatagtcg
     4681 cgctgaatca atcgccctga aggcgtgtag tatttcgccg aggtcagcgt caagcccgcc
     4741 ccggattcca gcgtatggat ggtttgcacc aggcctttac caaaggtagt ctgtccgaca
     4801 atcatcgcgc gatcgtgatc ctgcattgcg ccggcgacaa tttcggaagc cgaagcggtg
     4861 taatcgttta ccaaaataac caatggcgtg cgatcgggat cgcggttctt tgatctgtat
     4921 tcgttatcat ttttcccgtt gcgacccttc tgcgtcagga tcagttcgcc ggctggcagg
     4981 aaagctccgg cgacattgtt cgcctgctca aggaaaccac cgccgttgtt gcgcagatcc
     5041 agcaccagcg aagtcatgcc gcgtgaatgc agaaattcca gcgccgcctg caaaccttcg
     5101 gcggtgtcgt agttgaaccc gcgcgtcatg tcgatatagc cgacgccggg gcgaatcatg
     5161 taagcatcgg gcacggacgg ctgtggcacc gcgtcgcgca ctatgtccac gacatccgtc
     5221 ttgccgctgc cggcatgcgt gatcgtcacc ttcacctgcg aaccgcgcgg cccgcgaatc
     5281 ttgtcgcgca catccgccgt cggctttgcg tgcatcgaca ctccgtcaac cgcatcgatg
     5341 cgatcgccat agcgcaatcc gccgcgcgcg gccggcgaat tttggaacgt cgccgtgatg
     5401 tacgtgtcaa ccgaatcgcc aatcgcatag ttctgaatcg acgcgccaat gccaaaatac
     5461 tcgctccgct gctccgtcct catctcgtcg aactcttcct tgtcgaaata gttcgagtgc
     5521 ggatcgagcg tccgcagcat tcccatgatc gaagacttgt aaacgccgtt gtagtcgagc
     5581 ttgttgccgt cgatgtaatg atcctggatg acgctcagcg cttcgctgaa gtcttgctcg
     5641 accgccgccg tgggattgcc cggagtgcgc acgcgcggac gccgattggg cgctgaagtt
     5701 ggcggaccag acttggtcgt gctggttccg gcggaactgt ttgattgatc gcgccgccgt
     5761 tgagccaaaa caaaaaccgg cagagacagg gcaagaatga ttagcgccac cagcgccagc
     5821 gagaatttgt tcttcactgc gaacctcaca atgttttctt gaaacccgaa aggacaaaga
     5881 ccaaaaccgg ggagacttca cagccgcaac gacgcgaacc tgcccggcaa tcttaaacga
     5941 tgctcgttcg gggagcaagg ttgcgtttgg cattcttcaa ttcgtttcac gccgcgtgca
     6001 tcaacgccgt gcgcatcgcc gcggcggttt tccagcgttg ctccggatcc ttagccagcg
     6061 ctcgttcaat tacttccgcc acgcgatcgg gaacgtcagg cgcgcgcgtc agcaacggaa
     6121 tgatcgggct ttcaaagatc gctctgacgg ttcccgccat tccctgttcg ggatcgacat
     6181 tgagcgccgt atcgccggcc agcaggctgt aggcggtcat gccaatggcg taaatgtccg
     6241 acgcgggacg cacgttgcga aaatctttga tctgttcggg cggcatgtag gcgaacgtac
     6301 cggccatgtc gccggccatt gtgatgccgc tcattcccgc ttgcgtaaag ctcttagcca
     6361 aaccgaaatc agtgagctta gcgttgagat tcggcgccgc gccgctaatc agaatgttcg
     6421 actctttgat gtcgcgatgg atgtagccct tgccgtgcgc ataggcgagc gcgtcgagag
     6481 attgcgcgac gatgtcgatc gcttcgcgaa agggtaagcg accgcctttc gcatcggcca
     6541 gtcgcgccgc gtccgaccct tcgacatatt ccgtgaccag ataaaccgcg ccgttgtttg
     6601 ttccgctctt aatgaagcgc acgatgttcg gatgatccaa agcggcggcg acttcgattt
     6661 cgcgcatgaa gcgtttcagc gactgttcag tcacggcaac ttccggcaag agagttttga
     6721 tcgcgacttc gcgaccggat ttctcatcgc gcgccaacat cacgcagccc atcccgccgc
     6781 gacccagcac cttgatcatt tcgtaacccg gaactggcgc cggctggcgt cgaagttctt
     6841 cgcggcattc ttcgcacagg aaactcatcg cctcgttcgg gacagaggct tcggcgcgat
     6901 cgggccggcc gcaattagcg cacagcacca tcaccaccga aggctttgtc agcgttgggg
     6961 cttccgcgcc gctcacggcc gccgtcacag cctgatcgac ctgcacttca acttcgagca
     7021 cagtctgccc gccctgtatc cgatcgccgc tgcgcaggtg cgcttctggc acgcgctgcc
     7081 cgttcacgaa cgtaccgttg gtcgagccga ggtcgcgcaa gaaacaacgc ggcggcgcaa
     7141 tctcaagcag gcagtgatgc cgcgaaaaaa atttgtcttc gggaagataa agatgggcgc
     7201 tgtcgctgcg gccaatcagg aacgtgtcgt gatgatcgaa agcaaactcg cgcccgctgt
     7261 aagggccggc cagaactcgt aaggtaacac gcatcggctg agcgtcattt gctgatttcg
     7321 agatcgtcga aggctacttc gcccacgtcg ctggtgtaga acccgacgcg cccgcgccgg
     7381 tagccggctg aatcggttat cgaggtgatg aattgtccgt tgatgtaaag gtccattttc
     7441 aagtcgcgaa ttcgaacttc aatctgattc ggactggtgc cggtacgaat cacgctcgac
     7501 gaagtccaac tgacgagatt ggtttcggcg ccgcctttgt gcaggatgat cttgtacttg
     7561 gggtcttctc cggtgaaaag cagaaagccg tagtcctcaa gtttgccgtc cttcttttcg
     7621 ccatgcacta ccagaccgta accagtgctt ggagaattcc catcaatgct gcgcaagccg
     7681 acgcgcacag tggcattctc ggtgttgtac tccttcttgt ccggggcata catttcgata
     7741 aagcgggcac tgatggcgtg catgtgatac tcgtcatcct gataccacgc tttgccgtcg
     7801 gcccagttgc cgatggccca gtcttgagtg gaaaagtcat cggtgaaaga cgacagattc
     7861 gaacgcgtat ccgtgttggt gttcgtattt gtgttcgtgt tcaagtttga attcgtgttg
     7921 gaattgcgat tggccgaccg ccagttggca ttgttcgaat tgtttgccgc gcggttgttg
     7981 tcgttggtaa cgctggcgac ggcaaatatc agaatcacaa cgccaattcc catgaacacc
     8041 agcacggcgc caatgccgag tatccacggc cacacgctgc gcttctgagt ttgcggcggc
     8101 ggcatcggag tccaggccgg cggtggagcc ggcggcgcag gcatctggct cggattgtaa
     8161 gcgatcgtcg gctgcggcga agtgtcgcgc gcctgcggat actgaaccgt cgcgctcgga
     8221 tcaagagaag acggcgcgct cacgctctga agcggcgaac catcatcgag acaaaagctc
     8281 agagcatcat cggtataagt gcggttgcat tggggacagc gcttcatgtt cagcctcgtt
     8341 tcttcttcgg tatagaaccg ctcgcgatgg taagtgcgtg agttgctcgc ctttcgccga
     8401 tcgttacctt tttcaagaat cgcgcgggaa gtctatacga gaagctgaac ggcactcaag
     8461 tccaatcgga tgaagtgatt cgtcggaagt atctcaggcc cgaagggccg ttagctaata
     8521 gccacgcccg taagggcgtg gtccagcgtt agtggaaaag tgcggagcgc cgaaggcgcg
     8581 ggacatgcta tgcgaatctg cgtcgccctt tgggcctctg acacgatctc ttcgatgctg
     8641 attccccgcc ctcacgggcg ggactattta gtaacgcctc ttcgaggctc ggtcgcgcga
     8701 tcgctatgca ctaaagcgtc cgcccgcagc gcccgcagaa ttttgtgccg gagggatagc
     8761 tcgtgttgca cgtcggacag agagcctcga cagggcgcgg cgccttccag gcaatctcgc
     8821 tgccgcccag cgacgcgccg cagcggccac agaactttgt gcccgcgggt tgttccatgc
     8881 cgcaacgcga gcacttgatc ttgttggata atccagccac gggaggttgg ttcaagcttg
     8941 agggcgagac tgccggttgg cgtgccggct ggtgcacatc gctcgtgacc tcgcgaaaag
     9001 tcgtgttgcc gcagcgaccg caaaactttg tgccggcggc aaaacgcgcg ctgcattttg
     9061 tgcaagcgac gacgccgggc gcgctcagcg tcacacctga aacgctgccg agactgccgc
     9121 cttgcgacgg cgacagtccg ctcgaaggcg cggacttgaa ctgcgcttga atgatctgct
     9181 cgtcagcgtc ggggcggatc tcgatcacgc gctcgtcatc ttcatcgccc gcgtgcgcaa
     9241 cccgcaaaac gtgctggccc ggcggaatgg atttcaaaat aactcgcccc gaacgtccga
     9301 tgctgccgtg acgttcgtcg tcaacgtaaa cttcagcgcc cgtcggcgcc atgatcacca
     9361 gccgcgattc gccttcgtct tcgattttcg aagcactgtt gaccgcatca tcaaactcag
     9421 taaaccaact ggccacggtc ggcggccgtt ggtcggcctc ttttgctaac gcgtgcatca
     9481 ccgatttctc gaccgtcgtg ggaatgtcgg aacgcagagt gttcagcggc ggcgcgtcct
     9541 gcgtcagctt ctgcgcaaag atttgcatga tgtcgccggt aaacggaggc cgtccgccga
     9601 gcatgtgata agcgatcgcg ccgagcgcgt aaacgtccgc gcgcgcgtcg agcgcgacgc
     9661 ctgtctgcat ctgctccggc gccatgtatt cgggagtgcc aagaattccg cgcgacgccg
     9721 ggccgcttcc ggaagtcaga ccagacaaac tctggctgat gatcttggcg agaccaaagt
     9781 cgccgacttt cacgatgtcg tcaccggcga tcgtgacgtc ctttttcttt cgctgcacga
     9841 taaaaacatt cgccggtttc agatcgcgat gcagtatgcc ttcgtcgtgc gcggcttcga
     9901 cgcccgcgct gatctgtcgc agcatggcca gcgaccgctg cactgtcagt gtgccctcgc
     9961 ggcgcaggag ttgataaagc gattcgcctt cgacgtattc catcaccaga aagaacacgc
    10021 cttcgtcgct cttgccaaag tcggtcacgt caatgacgtt cggatgttga atcgaagccg
    10081 cggtgcgcgc ctcgcgctcg aacctggcaa tggcttcgcc ttcctgcaag tcttcatcag
    10141 aaagaacgtc aggtcgaatc gttttgacgg cgacgcgccg cgttaacaga ttttcgtcgc
    10201 gcgcgagata gacctggccc atcgcgccgc gcccgagacg tttctccaaa cgatagcgcg
    10261 cgttcaagag cgtcgtgccg ggcagagtca ttttcgtctt tgactgatcg tcaggacata
    10321 gcgaggcgtc gtcttcaaag catcgttcac atcgtggaca ttcgcgcatg gcccgaatcg
    10381 caagaataag gtgtcgcgcc aagcacggtc aatcgaatcg cgccggaaaa ctgggcgcgt
    10441 gaacgacggc tcgaccggca ttcggcgctg ggaaggcctg cgaaataaat gtctttactt
    10501 gatgggccaa ctggcccata attccctccc ctcgccgtgg atgggacgag ggcgagccgt
    10561 tcggaggctc gaaaatgcgg gcgcgatgcc cgcgtttgtg tctaaggagg atccgatgcg
    10621 atcgatttgg aaaggccaca tacgttttct gttcgtcgcg attccggtgc gtgtttataa
    10681 cgctatcgag gcgtccgaaa agattcagtt caatcaacta caccgtgaag atttcggccc
    10741 catcggttac gacaagcgct gcaagaagtg cggccaggtc gtcaccaacg aagagatcac
    10801 gaagggctat cagtatgaat ccgaccgtta cgcgatcgtc gagcccgaag agatcgccaa
    10861 agtcaaaatc aaaaccaaca aggccgtgga catcatgggc tttgtcgatg cgtccgagat
    10921 tccgacaacg ttttacgacg cgccgtacta cgccggcccg gatggtccgg tatccgaaaa
    10981 gccttacgcg ctgctgcgcc aggtgctgaa agacacgggc aaggtcggtc tggcgaaagt
    11041 cgtcttgcgc gatcgcgaag atttggtcgc tgtcttccca catgagaacg gcatcgtgtt
    11101 gcagaagcta cactaccccg ctgaaattcg gagcatgaaa gatgtgcccg aactcgacgg
    11161 cgcgcaaaag ctcgacaaaa aagaattggg tcttgcgacc aacctcgtcg agcaaatggt
    11221 aacttctttt gctgacatcg acacggtgga tcattatcac gaggcaatgc gaaaactgat
    11281 cgattcgaag atcaaaggca agaaggtgac ggagtttgaa aagatcgaag aagtgccgca
    11341 cctcgacata atgaccgcgt tgaaaaagag cctgcaagct tcgacgcgca agccgatggt
    11401 caaggccgca accgcgataa agaaaaaagc cgcgctcacg ctggtcaaag cgaaaccggc
    11461 tgctcgcaaa cgcaaagttg gttaagctcg gctgctgaga gactccggcc agtagtctga
    11521 ctgctgattc atcatctcaa acacaatcgc gtttcctttc cccagcccag gcgttcgcgc
    11581 cttgggtttc tgtttgagcc ctcaactgtg gttgggcact catgcgatca ctctaaattt
    11641 ctgacaaaga actcgatcat ttgcagaaac agttcgagaa gttgcaacag acggaaagac
    11701 gaaagaagta aaccgacttt ggcttcaaga gaaacaggcg cgcctcgggt ctgcggcctt
    11761 tgaccaccgc aaccctccgg gtcgcaaccg caaccgctta ccgtcgactg ccccgaatcc
    11821 gttccttctc cgtcaagtcg aatgataaac tgcgcgccat ctctcggagg tatgacatga
    11881 cttgctttgg ccggaaagcg ctctactctc tcgtcgtcgt attgatcgtt ctgctaacga
    11941 ccgcaaacgc cttcgcacaa caatacaatc ccgatctctt ctcaggcatg aagtggcgtt
    12001 tgattgggcc acatcgcagc gggcgcgtct ctgccgtcgc ggggatcgcg agcaaaccaa
    12061 acatctacta cttcggcgca ccgggtggcg gcgtttggaa gacaaccgat ggcgggcgag
    12121 tttggaaacc gatcttcgat gacgcccacg tcgcctcaat cggagcgata gcgatcgcgc
    12181 cgtcaaatcc aaacgtaatt tatgtgggca ccggcgaaga gaccgccggc aatggtatct
    12241 acaaatcaac cgacgccggc gctacatggg tcaacgtcgg tctccgagag acgcgctaca
    12301 tcacgtcaat aattgtaagt ccccgcaacc ctgacgtcgt tctggtctcg gttcgtgatt
    12361 actttgttcc cggtcccgag cgcggcgtat tcaaaaccag cgatggcggc aagacgtgga
    12421 acaaagtcct tttcaaagac gacaagacaa gcgtggttga tatgcgcgcg gcgccggatg
    12481 acagccgcat gatttacgcg gcgacgtata accttcagat cgatccgaac aataggcgag
    12541 cgctgggtag catctcgcag atctacaaat caactgatga aggcacaacc tggcaacaac
    12601 tcagcggcgc aggtttgcct gagacaggcc gtggttctat tggcttagct gtgtcgccaa
    12661 cgacggaagg caaacgcgtg tacgcgctcc tcaactccgg acttttccga tcggatgatg
    12721 gaggcgcgaa ctggcagcga agtacttccg acccgcgaat tctcggaaat aattctttgg
    12781 cgcgcaccta cgtcgatccg ggcgatccga atgtcgtgta tgtgatgcag acttcgatgt
    12841 atcgctcgac tgatggcggc aaaacgttcg acgcgttcaa gggcgcgccc agcggcgaag
    12901 atcagcgcgt gctctggatc gctcccgatg attcgcagcg aatgcttctc ggatcagatc
    12961 agggcgcgat cgtcagcgtg gacggcggtc acacttggac cgattggttc acgcaaccaa
    13021 ccggtcagtt ctatcacatc atcaccgaca acgcgtttcc ttatcgcctg tacgccgcac
    13081 agcaggacag cggctcagtc gccgttgcgt cgcgcagcga ctttggaatg atcacttatc
    13141 gcgattggtt ttcgaccggc gcatttgaaa gcggatacat tgcgcccgat ccggcgaagt
    13201 tgaatctaat ttattccgtg ggttggtatg gctcggtatt cagattggat cggacaacgg
    13261 gacagatttc gacggtgttc gcgcccggcg caaggtatcg gtacacgtgg gagacgccgt
    13321 tgattttctc gccgcgcgat ccaaaaacgc tctatgtcgg catgcaatat gtcttgaagt
    13381 cgagcgacgg cgcgcagacg tgggctgaga ttagtcccga ccttactgaa aaaactccgt
    13441 cgcctaacag tcaaggagtg atccaaacca tcgcgccgtc ggctgcgcaa gcgagcgaga
    13501 tttgggtagg cacgagtacg ggcatcgtgc agttgacgcg agacgacggt gcaagctgga
    13561 acaatgtgac tccgcccgag ctatccgaac gaagcaacgt cacactgatc gaagcttcgc
    13621 ccgttgacgc agacacagct tatgtcatcg ccgccgctcg cggtgattcg catccttata
    13681 tttatcgcac gcgcgacacc ggcaaatcgt ggcagaagat cgtaacggga ttgcctgacg
    13741 caggcatcgc tcgagtcgtc cgcgaggatc cagcgcgcaa aggattgatc tacgccggca
    13801 cggaaacggg agcgcatgta tcgttcgacg gcggagatca ctggcagcct ttgcaactca
    13861 acctgccaac aacttcggta cgcgatctta cggtgcacgg aaacgatttg gtggttgcaa
    13921 cttacggacg cgggttatgg attcttgacg acttgtcgcc gctgcgacag attcaagacg
    13981 agactcgcgc gtcgaattat ttgtataagc cggcaaccgc gttgcgcgta cgctgggata
    14041 atcaccccga cacgccgctt cctgccgata ctcctcatgg agagaatccg ccggaaggcg
    14101 ccatcatcta ctactacttg cgcgctgcgg taaaggaagt cgcgctcgaa attcgcgacg
    14161 aacgcggcaa catcgttcgc agtttctcca gcaagccaat gccgcccgac aggacgccga
    14221 agaacgttcc cgattattgg ttcgctcctc ctgaagttct tacaactcaa gctggtttga
    14281 accgcttcgt ctggaacttg gaatggccgc atcccgacac gctgccttac agcttttacg
    14341 gccgacatct tgactacatc gaatacacgc ttcccgatca cgcggtggcc ggcaagacgc
    14401 ccatcaatca accgccgggg ccgctcgccg tgcccggcag atatgaagtt gtgctgaccg
    14461 tcgacggcca gacctatcgc caacctttga ttgtcgctct cgatccgcgc gtgcacgtgt
    14521 cggctggcga tctcgaagcg caactcgatc tcgcgaagca gattgattcg tggatgaaca
    14581 ttagttatcg ctcttacaat gacgtcgcag ctttgcgcgc ggctttggct gctgctcaga
    14641 agagtctggc cgcgaactca caagcgaaag aaacaactga cgccgcccaa gcactggaaa
    14701 aagaactcgg cgaaattcag gacggcacga atacggctcc cgggttcggt tcggtaaacc
    14761 gcgacgtggc gcgattcgtg acgatgattc agagcggtga cctgcgcccg gcaaaatcga
    14821 taatcgaaaa cgccgctccc tcgtgcgatg ctttgaagaa cgatctagtg cgatggcgaa
    14881 agattaatgc agagacgctg ccggctttga atagtcttct gaagcaaaac aaactggcgc
    14941 cgttggcgat cgtaaccgtc gcgaaggatc cggtctgtcc caatcggtga attgcgagcc
    15001 gagagcagcg aagagatgaa aactgtcgga atcatcggtg gcatcggacc cgagtcaacc
    15061 atcgaatact accgtgggat tattgccgct tatcgtgagc ggcaaaccga cgggagctat
    15121 ccgtcgataa tcatcaacag catcaatttg accatcctgc tcggtttgat cattgcgagc
    15181 gagctcgaca aagcgactga tcatctcgtt aatgaagtgc agaagtt
//
LOCUS       DASZZE010000079         6609 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_133061, whole genome shotgun sequence.
ACCESSION   DASZZE010000079 DASZZE010000000
VERSION     DASZZE010000079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6609)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6609)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6609
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_133061"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..675)
                     /locus_tag="VHD88_01500"
     CDS             complement(<1..675)
                     /locus_tag="VHD88_01500"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HVS20487.1"
                     /translation="MKYCSTCNEKFDDSISFCPKDGEVLEEDPSSLVGTVLDGQYQVE
                     AVLGKGGMGAVYRARHILLGDRVAIKVLPPEMRSNTEWLRRFQREGQASRRFRHPNAV
                     TVYDLRTSADGTIYLVMEYVEGSTLDAELRKHGRFSPAESLAVLSSVMSVLNAAHAMG
                     VVHRDLKPENIMIGKATTGGEPVVKLLDLGIAKLREVAGAEKTGNTALTIAGQMLGTP
                     YYMSPEQ"
     gene            complement(720..2894)
                     /gene="glgP"
                     /locus_tag="VHD88_01505"
     CDS             complement(720..2894)
                     /gene="glgP"
                     /locus_tag="VHD88_01505"
                     /inference="COORDINATES: protein motif:HMM:TIGR02094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucan family phosphorylase"
                     /protein_id="HVS20488.1"
                     /translation="MIMVAEPENHTADKKQLRLNNLPQTLQPLERLAWNYWWSWAPDG
                     PAVFRDLDTDIWEQCEQNPRALLAQVSERRLAEMATDPIFAFRVQRLVERFDSYIADT
                     SVSPNLHLTSAITREHPVAYFCAEYGIHNSLPLYSGGLGILAGDYLKSASDLNLPLVA
                     VGLLYRFGYFRQRLRNDGWQEESYRETYASEIPIEPMQNESGEALMIEVAMREHVVRA
                     RVWRADIGRVPLYLLDTNLAENEEADRLVTGHLYGGDRETRMVQEMMLGIGGVRLLRK
                     LGIEPSVFHLNEGHSAFLTLELARETIESEHVAFSEVASRVRERCVFTTHTPVAAGHD
                     EFSAALIEKGFGNWYETALGLTRDEFLALGRVNGKADEGFGLTPLALRLCRSTNGVSR
                     KHGEVSRELWHKMFLDRDVANVPITSVTNGVHPATWAAPLMHALYEKHIGDDWRTKAR
                     DANVWSDGVRNISDEELWQAHCLLKQRLVAFVRHHSSQTRLARGENEDYINAARTMFD
                     PETLTIGFARRVAGYKRWDLLLSAPERLTRLIDDSERPVQFVFAGKAHPQDQGAKLVL
                     QKLIEWQRESSVRDRVAFIEDYDQEVARQLVQSVDVWMNVPRRPQEASGTSGQKAAVN
                     GGLNFSVFDGWWLEGYDGQNGFAIGDLSELADDEADRRDAESMYRVLEGEIVPRYYDR
                     DADGIPRRWIAMMKRAIQTLVPAFNSDRMVAEYAERIYQPPR"
     gene            complement(2899..3459)
                     /locus_tag="VHD88_01510"
     CDS             complement(2899..3459)
                     /locus_tag="VHD88_01510"
                     /EC_number="3.1.1.106"
                     /inference="COORDINATES: protein motif:HMM:NF001664.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetyl-ADP-ribose deacetylase"
                     /protein_id="HVS20489.1"
                     /translation="MNSELEQTFLNGRVRVVVGDITTQDVDAIVNAANSSLLGGGGVD
                     GAIHRAGGPEILEACREIRRTRFPEGLPTGEAVITTGGKLSALYVIHTVGPIYGEHRG
                     KEAELLANCYHNSLTLAVEHNLASVAFPAISTGIYGYPPAVAADVSSKTIANFLGTDK
                     QLKEVRMIFFQPRDAEVFLEHQKFSE"
     gene            complement(3460..5121)
                     /locus_tag="VHD88_01515"
     CDS             complement(3460..5121)
                     /locus_tag="VHD88_01515"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HVS20490.1"
                     /translation="MFAEAGSRPLSRTTLSVALSLLLIAGFGFRVTELSSEGLSDDEL
                     NKLDAVADYRAHGLTSANGEHPLLMKALLAVSIIGAEKWNHASLVAAHPELSIPVETS
                     LRFPNALFGSLTVVLLFLVASELFGFEVGLIAAALWAFDPLVIGFNRIGKEDTFLVFF
                     FLLANVFWLRGQRVAESQPQRKPEPFYWATAASFGAMLASKYILQPLVISVAYNYTFQ
                     GMRATRWRIGKKRFLKFFIVMGIVFVICNPTIFLPGTWRAMADFASYRTMGHDSYEFM
                     GRFYSHRVTDWLRGIPWYFYLVLIGVKIPLLTLLGFVLGLGLLFKKKSGDGRFFLLLW
                     LLVWSLTFTFSGGKFTRYSLSVLPAVMMTAAIGVQFVARQFGRFCAQVLDSDGVKSYA
                     RAALASLVVISVLWSAASAAPHYRLYMNALGGGSGRAGSYFPQDEFYDAYVRDAMIEI
                     EKRAQPGTRVASEAPTVAAYYARQANRSDLDCLELSDPEAVQKLAPGDFLIDGRGRTY
                     SSNQAMLSRLRQASRPAFSIAVGTTPAAEVYVLDQKALDALPGRK"
     gene            5531..>6609
                     /locus_tag="VHD88_01520"
     CDS             5531..>6609
                     /locus_tag="VHD88_01520"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HVS20491.1"
                     /translation="MDEKLHQILYKEESRPVLEAKPEAELLPEPPYPIHPDPQPMTKS
                     EYQKLNAIRTWKTWGSPYFKSRWYSNDLRPIIPYLFTEWKCNLDCHYCWSYNNKVKGM
                     TEDVAKRSIDWLHSIGSRVLALMGGEPLLRPKFIHKIVHYSAKKDIFVYLPTNGRLMK
                     PEVIDRLGDAGIATVNLAVDSVKDRKSLPKALDPIRPYFDYLVKRQHHYGYTVMFNIN
                     ICRNNMDDVRELTEIAHDNGIATDYHINETPMMEQDHFKHLDENVTYLTPDDWSKVDD
                     LLDYLDAKRHNEGYKMVNQSKHMQDMKQLMRGAVPPWKCRAGQNSLIIRTDGTLAPCF
                     PMYSATHDWGTIENPKFDNAQLDEM"
BASE COUNT         1565 a         1902 c         1776 g         1366 t
ORIGIN      
        1 ctgttcgggc gacatgtaat aaggagtgcc cagcatctgg ccggcgatgg tgagcgcggt
       61 gttcccggtc ttttcagcgc cggcgacttc gcgcaatttc gcgatgccga gatcgagcaa
      121 cttaacgacg ggctcgccgc cagtcgttgc ttttccgatc atgatgtttt cgggcttgag
      181 atcgcgatgc actacgccca tcgcgtgcgc ggcgttgagt acactcatga cggagctaag
      241 taccgccagc gactctgccg gtgaaaacct tccgtgcttt ctcagctcgg cgtcgagagt
      301 gctgccctcg acgtattcca tgacgagata gattgtgccg tcggccgacg tgcgcagatc
      361 gtaaacggtg actgcgttcg gatgacggaa gcgccgagag gcctgacctt cgcgctgaaa
      421 acggcgcagc cattcggtgt tgctgcgcat ctctggcggc agaactttga tcgcgacgcg
      481 atcgccgagc aggatgtggc gcgcacgata gacagcgccc atgccgcctt tgcccaaaac
      541 ggcttcgacc tgatactggc cgtccagcac cgtgccgacc agcgaagagg gatcctcttc
      601 cagaacctcg ccgtcttttg gacagaagct aatgctgtcg tcaaattttt cgttgcaggt
      661 cgagcagtac ttcacggtgg actagtttac aacgaagggc ggtaacgcgc gaatggaagc
      721 tagcgcggtg gctggtaaat tcgctcggca tactcggcca ccattcgatc gctgttgaaa
      781 gccggcacga gcgtttggat cgctcgtttc atcatcgcga tccatcggcg agggatgccg
      841 tcagcgtcgc ggtcgtaata tcgcggaact atttcacctt caagaacccg atacatcgat
      901 tcagcatcgc gacggtcggc ttcgtcgtcg gcaagttcgc tcaggtcgcc aattgcaaaa
      961 ccgttctggc cgtcataacc ttcaagccac caaccgtcga acacggaaaa gttcaagccg
     1021 ccattgaccg cagctttttg tccgctggtg ccggacgctt cctgcggccg gcgcggcaca
     1081 ttcatccaca cgtcaaccga ttgcaccaac tggcgcgcca cttcctgatc gtagtcttca
     1141 atgaatgcga cgcgatcccg cacggagctc tcgcgttgcc attcaatcag tttttgcaga
     1201 actaatttcg cgccctgatc ctggggatgt gccttgccgg cgaacacaaa ttggacgggc
     1261 cgttcactgt catcgatgag tcgagtcaat cgctctggcg cgctcagcag aagatcccaa
     1321 cgtttgtatc cggcgacacg acgcgcgaaa ccgatcgtta gggtttcagg atcgaacatc
     1381 gttcgcgccg cattgatgta gtcttcgttt tcaccgcgag ccaaacgcgt ttgagatgag
     1441 tgatggcgaa caaacgctac cagtcgctgt ttcagcaaac agtgcgcctg ccacaactcc
     1501 tcgtcggaaa tgtttctgac accatcgctc caaacattcg cgtcccgcgc ttttgtccgc
     1561 caatcgtcgc cgatgtgttt ttcgtaaagc gcgtgcatca acggcgcagc ccaagttgcc
     1621 ggatgaactc cgttcgtgac tgacgtgatc ggaacattag caacgtcccg atcaagaaac
     1681 atcttgtgcc ataactcgcg cgagacttcg ccgtgcttgc ggctcacgcc gttagtcgaa
     1741 cgacacaaac gcagcgccaa aggcgtcagg ccaaatcctt cgtcggcctt gccgttaacg
     1801 cgcccgagcg caagaaactc atcgcgcgtc agtcccagcg ccgtttcgta ccagttgccg
     1861 aaaccctttt cgatcagcgc agcgctgaac tcgtcgtgtc ccgccgcgac cggtgtgtgc
     1921 gtagtgaaca cgcaacgctc gcgcacgcga ctcgctactt cagagaaggc gacgtgctcg
     1981 ctttcgatcg tttcgcgcgc gagttcgagt gtgagaaacg cggagtggcc ttcgttcaga
     2041 tgaaatacgc tcggttcgat ccccagcttt cggagcagac gcacgccgcc gattcccagc
     2101 atcatttcct gaaccatgcg tgtctcgcga tcgccgccgt atagatggcc agtcacaagg
     2161 cgatcggcct cttcgttttc tgcgaggttt gtgtcgagta aatagagagg cacacgaccg
     2221 atatcggccc gccagacgcg cgcgcgaaca acgtgctcgc gcatcgcgac ttctatcatc
     2281 aatgcttcgc cgctttcatt ttgcatgggc tcgattggaa tttcgcttgc gtacgtctcg
     2341 cggtaagact cttcctgcca accatcgttg cgcaagcgct gacgaaaata accgaagcga
     2401 taaagcaaac cgaccgcgac cagcggcaga ttcaaatcgc tggcggattt cagataatcg
     2461 cccgccagga tgcccaagcc gcccgaataa agcggcagcg aattgtgaat cccatattcg
     2521 gcgcagaagt aagcgacggg atgctcacgc gtaatcgccg aggtcagatg aagatttggc
     2581 gacacgcttg tgtcagcgat gtaggaatca aagcgttcca ccaatcgctg aacgcgaaaa
     2641 gcaaaaatcg gatccgtcgc catttccgcg agccggcgct cggaaacctg cgccaataac
     2701 gcgcgcggat tctgttcgca ctgttcccaa atgtctgtgt cgagatcgcg aaagactgcc
     2761 gggccatcag gcgcccagct ccaccagtaa ttccacgcga gccgttcaag cggttgcaga
     2821 gtctggggaa gattgttcaa gcgtaattgt tttttgtcgg cggtgtggtt ctctggttcg
     2881 gcaaccatga tcatgtaatt actcgctgaa cttctgatgc tccagaaaaa cttccgcatc
     2941 gcgaggttga aaaaagatca ttcgcacttc cttcaattgc ttatcagtcc ccagaaagtt
     3001 agcgatcgtt ttcgaggaaa cgtcggccgc tacagctggt ggataaccgt aaatgccggt
     3061 tgaaatcgca ggaaaagcga cggaagccaa attgtgttca accgcgagag tcaacgagtt
     3121 gtgataacag ttagcaagta gttcagcttc ctttccgcga tgctcgccgt agattggccc
     3181 aacggtgtga atcacgtaaa gcgcggacag cttgccgcca gtcgtgatta cggcctcacc
     3241 ggtcggcagt ccttcgggaa aacgcgtgcg acgaatttcg cgacatgctt cgagaatctc
     3301 cgggccacca gcgcgatgaa ttgctccgtc aactccgccg ccgccgagca gcgaagagtt
     3361 tgccgcgttc actatcgcat cgacgtcttg cgttgtgatg tcgccgacga cgacgcgcac
     3421 acggccattc aagaaagttt gttcaagttc agagttcact tattttcttc ctggcagcgc
     3481 atcaagcgct ttctgatcca acacgtaaac ttccgcggct ggtgtggttc ccactgcaat
     3541 actgaacgca ggtcggcttg cctgtcgcag acgcgacagc atcgcctgat tgctagagta
     3601 agtccggcca cgcccgtcga ttaggaagtc gcccggggcg agtttctgca cggcctcggg
     3661 atccgatagc tccaaacaat ccaaatcgga tcgattcgct tgccgcgcgt aatatgccgc
     3721 aacggttggc gcttcgctgg caacacgtgt gcctggctga gcgcgctttt cgatctcgat
     3781 catcgcgtcg cgaacatagg cgtcataaaa ctcgtcctgc ggaaagtacg aaccggcacg
     3841 ccctgagcca ccaccgagcg cgttcatgta gagccggtaa tgcggcgcgg cgctcgctgc
     3901 cgaccaaaga actgaaatca ctaccaaaga cgccagtgct gcgcgcgcat aactcttaac
     3961 accatcgctg tccaaaactt gtgcgcagaa tcttccgaat tggcgggcaa caaattgcac
     4021 tccaatcgcc gccgtcatca tcactgccgg cagaaccgaa agtgagtagc gggtaaactt
     4081 gccaccggag aaagtgaatg tcagtgacca aacgagtagc cacaagagca gaaaaaagcg
     4141 tccgtcgccg ctctttttct tgaatagcaa accgagtccg aggacaaatc caagcagcgt
     4201 cagcagcgga atctttactc ctatcagcac gagatagaaa taccacggta tgccccgtaa
     4261 ccaatccgtg acccgatgcg agtaaaaccg gcccatgaat tcgtagctgt catggcccat
     4321 cgtccgatag ctggcgaagt ccgccatagc gcgccaggtt cctggcaaga atatggtcgg
     4381 gttgcaaatc acaaacacga tccccatcac gataaagaac ttcagaaatc gtttcttacc
     4441 gatgcgccac cgtgtggccc gcattccctg aaacgtgtaa ttgtaagcaa cactaatcac
     4501 gagcggttgg agaatatact tcgaagccag catagcgccg aacgacgccg cggtggccca
     4561 ataaaaaggc tcaggcttgc gctgaggttg gctctccgcg acgcgctggc cccgcagcca
     4621 aaatacattt gcaagaagaa aaaagaacac tagaaaagtg tcctccttgc cgatgcgatt
     4681 gaatccaatc acaagtggat cgaaagccca caaagcggct gcgatgaggc ccacctcgaa
     4741 accaaatagt tccgaggcta caagaaaaag taacacgaca gtcaaagacc cgaacaacgc
     4801 gttcgggaaa cgcagagaag tttccacggg gatgctgagt tcagggtgcg ccgcaaccag
     4861 agatgcgtga ttccattttt cggcgccgat tatgctgacg gcgagcagcg ctttcatgag
     4921 cagcggatgc tcgccgttcg ccgaagtgag tccatgcgcg cgatagtccg cgaccgcatc
     4981 cagcttgttt agttcatcgt cgctcaggcc ttcgctgctc aattcggtaa cgcggaaacc
     5041 gaaccccgca atcaacagca aactgagcgc gacggatagc gtggtgcgac tgagtggtcg
     5101 gctgccggcc tcagcaaaca attcgggtct caatcccgct gtaacaatag gggaagcagg
     5161 agcagacaaa gtctgtatgg cctccaaact ggttgacggc gcgcagcgct accggcagtc
     5221 gtacggcaga caaaaatgcg aatgtcgcag tcgcacaaaa cggcaaagct tagctttaat
     5281 cggcgtaccg ggcaactgaa cccggcccgt caggcgagta aacatgagaa atgagcttgc
     5341 aattgcaacg caaatcggcg actattggcc cttgattttc agaccccgca cctttgtgtg
     5401 cttggacgct taagtaacgc gaaggggccc taatcaactt tttcaatcat ttagtggaga
     5461 gataacaaat atggcaccgc cagcacttca gcaagagaac gctccggctt cctcggcgcc
     5521 agcgtttagg ttggatgaaa aacttcatca gattctttac aaagaagagt ctcgtcccgt
     5581 gttggaggca aagccagagg cggaacttct gccggagcct ccgtacccga ttcaccccga
     5641 cccgcagccg atgaccaagt cggagtacca gaagctgaac gcgatccgca cgtggaaaac
     5701 ctggggctcg ccttacttca aatcgcgttg gtacagcaac gacctgcggc cgatcatccc
     5761 ttatctgttc actgagtgga agtgcaatct cgattgtcac tactgctggt cgtacaacaa
     5821 caaagtcaaa ggcatgacgg aagacgtagc gaagcgctcg atcgattggc tgcattcgat
     5881 cggttcgcgc gtgttggcgc tgatgggcgg cgagccgctg ctgcggccga agttcattca
     5941 caagatcgtt cactacagcg cgaagaaaga catcttcgtt tacctgccaa cgaacggtcg
     6001 cttgatgaag cccgaagtga tcgatcgcct gggcgacgcc ggcatcgcaa ccgtcaatct
     6061 cgcagttgat tcagtcaaag acagaaagtc tttgccgaag gcgctcgatc cgattcggcc
     6121 ttacttcgat tatctggtta agcggcagca tcattacggc tacacggtga tgttcaatat
     6181 caacatctgc cgcaataaca tggacgacgt tagagagctt acggaaatcg cgcacgacaa
     6241 cggcatcgcg accgactatc acattaacga aacgccgatg atggagcagg atcacttcaa
     6301 gcatcttgac gagaacgtca cgtatctgac gccggacgac tggtcaaagg tcgacgacct
     6361 gctggattac ctcgacgcca agcgacacaa cgaaggctac aagatggtca atcagagcaa
     6421 gcacatgcag gacatgaagc agctcatgcg cggtgcagtg ccgccgtgga agtgtcgcgc
     6481 cggccagaac tcgctgatca ttcgcaccga tggaacgctg gcgccctgct tcccgatgta
     6541 ttcggctacg cacgactggg gcacgatcga gaatccgaag tttgacaacg cgcagctgga
     6601 cgagatgaa
//
LOCUS       DASZZE010000080         2216 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_68320, whole genome shotgun sequence.
ACCESSION   DASZZE010000080 DASZZE010000000
VERSION     DASZZE010000080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2216)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2216)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2216
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68320"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..408)
                     /locus_tag="VHD88_01525"
     CDS             complement(<1..408)
                     /locus_tag="VHD88_01525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HVS20492.1"
                     /translation="MRRSYFFTSIAAVAVLLCSAAAISAQVGQLRGHVLFKQADGTTI
                     KAAGAQIDVYRTDLPGSYPSKANKNGEFVYAGLPYVGTYIIVASMPNAAPVYQPNAKA
                     GRDVDYQIILTPGDGRRLTADEAKKLAAGGGVSS"
     gene            complement(529..1299)
                     /gene="queC"
                     /locus_tag="VHD88_01530"
     CDS             complement(529..1299)
                     /gene="queC"
                     /locus_tag="VHD88_01530"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: protein motif:HMM:NF018242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HVS20493.1"
                     /translation="MKAAAIDGLRIMGGSNETTIDDVEAELDSSFILHPSSLAICLVS
                     GGMDSCVTAAIAREENDELAFLHVSYGQRTEARERRAFNELADYFAVAKRLAVSIEYL
                     TKIGGSSLTDASIPVSEANLSSHEIPSSYVPFRNSHLLSIATSWAEVIAARSIYIGAV
                     TEDSSGYPDCRSEFYEAFQRAIDVGTKPETRIEIVTPVIHMRKSEIVNRALELAAPLE
                     LTWSCYQTEDKACGRCDSCALRLRAFREAGARDSIPYA"
     gene            complement(1330..1974)
                     /locus_tag="VHD88_01535"
     CDS             complement(1330..1974)
                     /locus_tag="VHD88_01535"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HVS20494.1"
                     /translation="MLRVTEIFRSIQGESTHAGRPCTFVRLTGCPMRCVWCDSEYTFS
                     GGEQFSIEEVMEKVLDFGCQLVEVTGGEPLAQREAFDLIKQLCDEDYEVLIETGGYVS
                     IADVDKRAKIILDVKCPASGEAERNHWPNLDLLRADLDEVKFVIADRADWDFARSVII
                     EHDLEHCAKSVLISPAWGQIDLKELANWIAESGMNVRMQLQMHKYIWGAEARGV"
     gene            complement(2035..>2216)
                     /locus_tag="VHD88_01540"
     CDS             complement(2035..>2216)
                     /locus_tag="VHD88_01540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20495.1"
                     /translation="CFSSSSKGFLIGCWPYAITIFHINIDNLAAGEHRFDEVVALWLP
                     GRCRTASGSERLQKQ"
BASE COUNT          484 a          633 c          593 g          506 t
ORIGIN      
        1 cgagctaacg cctccgccgg cggcgagctt ctttgcttca tcagcagtta gtcgccgacc
       61 atcgcccggc gtaagaatga tttggtagtc aacgtcccgc ccggccttcg cgttgggttg
      121 atacacggga gcggcgttag gcatgctggc cacgattatg taagtaccga cgtagggcaa
      181 gcccgcgtac acaaactcgc cattcttgtt cgcctttgat ggatagcttc cgggcaggtc
      241 cgttcgatag acatcgattt gcgcgcccgc ggcctttatc gttgttccgt ctgcttgctt
      301 gaacagcaca tggccgcgaa gctggccgac ctgggctgag atggcagcgg cgctgcaaag
      361 aagaactgcg actgccgcga tcgaggtaaa gaaataagaa cgacgcattg agtattcctc
      421 caaaaacttt tgtggtcctc tcctgagcaa ccaaggttaa gatgccttgt tcttgcgaca
      481 agttgtaggt tgaaaccgcc cctaagttaa tcagggagcg catcactgtc aagcataggg
      541 aattgagtca cgcgctccgg cttcgcgaaa cgcgcgcagg cgcaacgcgc aggaatcgca
      601 gcgtccgcaa gccttgtctt ccgtttgata gcatgaccat gtgagttcca acggcgctgc
      661 cagttccaga gcccggttca cgatctctga tttgcgcatg tgaatcaccg gcgtaacgat
      721 ttcaatgcgc gtttctggct ttgtgccaac gtcgattgcg cgttgaaatg cttcgtagaa
      781 ctcagaccgg caatcgggat agcctgatga atcctcggtc accgcgccaa tgtaaattga
      841 ccgcgcggcg attacttcgg cccaacttgt cgcgatcgaa agcaggtgag aattgcgaaa
      901 cggaacgtag ctcgacggaa tctcgtgcga actgagattg gcttcgctga cgggaatgct
      961 cgcatccgta agcgacgagc ctccgatttt cgtcagatac tcaatcgaaa cggccagacg
     1021 tttggcgacg gcgaaataat ctgccagttc gttgaacgcg cggcgttcgc gggcttcggt
     1081 gcgctggcca tacgagacgt gaaggaaagc gagttcgtcg ttctcttcgc gtgcgattgc
     1141 cgccgtgacg cacgagtcca tgccgccaga gacgagacaa atggctaagg atgaaggatg
     1201 aaggatgaag gatgaatcaa gttcagcctc aacatcgtcg attgttgtct cgttgctgcc
     1261 tcccatgatt ctcaatccgt ctatcgcggc ggctttcatc cttcatcctt ccgccgtcat
     1321 ccttgctttt caaacgccgc gcgcttccgc cccccagatg tacttgtgca tctgcaactg
     1381 catgcgaacg ttcattccgc tttctgcgat ccaattcgcc aattccttca aatcgatctg
     1441 gccccaggct ggcgatatca ggacagattt ggcgcagtgt tcgaggtcgt gctcgatgat
     1501 gacgctgcgg gcgaagtccc agtcagcgcg atcggcgatc acaaatttca cttcgtcgag
     1561 atcggcccgc agcaaatcaa gattcggcca gtgatttcgc tcggcctcgc cggaagccgg
     1621 acacttcacg tcgagaatta tcttcgcgcg cttatcaaca tccgcgatcg aaacatagcc
     1681 accggtttcg atcaaaactt cgtagtcttc gtcgcacaat tgcttgatca aatcaaacgc
     1741 ttcccgttgg gccagtggct cgccccccgt gacctcaacc aattgacagc cgaagtcgag
     1801 cactttctcc attacttcct caatcgaaaa ttgctcgccg ccgctgaacg tgtattcgct
     1861 gtcgcaccag acgcagcgca tcgggcaccc ggtcagacgc acaaacgtgc atggccggcc
     1921 ggcgtgcgtt gactcgccct gaatcgagcg gaagatttca gtgacccgca gcatggaaag
     1981 attctagatt cttgatctgc gattgtcgat tctcgctgtg gcgcgagttg ttgcctactg
     2041 tttctgaagc cgctcgctac cgctcgcggt tctgcaccgg cccggcaacc aaagcgccac
     2101 aacctcatca aatcgatgtt cgccggctgc gaggttgtcg atattgatgt gaaagatcgt
     2161 gatagcataa ggccaacagc cgattaggaa tcccttggac gaagacgaaa agcaaa
//
LOCUS       DASZZE010000081         3244 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_198068, whole genome shotgun sequence.
ACCESSION   DASZZE010000081 DASZZE010000000
VERSION     DASZZE010000081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3244)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3244)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3244
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_198068"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..480)
                     /gene="coaE"
                     /locus_tag="VHD88_01545"
     CDS             complement(<1..480)
                     /gene="coaE"
                     /locus_tag="VHD88_01545"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: protein motif:HMM:TIGR00152.1"
                     /note="Dephospho-CoA kinase (CoaE) performs the final step
                     in coenzyme A biosynthesis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004140 - dephospho-CoA kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HVS20496.1"
                     /translation="MLKVGLTGSIAVGKSFVLSLLAELGCRVLDADAVAREVVAPNTP
                     GLKAVVNAFGTNVLKADGSLDRAKLGAIVFADEEKRAQLNSILHPFIIAAQDERMREW
                     ERQEPQAIAVVDAALMIESGGYRRFDKLIVVHCRPEVQLQRLMTRDGLSREEAEQRIA
                     "
     gene            complement(537..1499)
                     /locus_tag="VHD88_01550"
     CDS             complement(537..1499)
                     /locus_tag="VHD88_01550"
                     /inference="COORDINATES: protein motif:HMM:NF014881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 5,10-methylenetetrahydrofolate
                     dehydrogenase/5,10-methenyltetrahydrofolate
                     cyclohydrolase"
                     /protein_id="HVS20497.1"
                     /translation="MLRFPLMVTVEAKRAEILDGRRIAEQINQEVAAEVRRLRVQHQV
                     KACLAAVLVGDDDASAVYVRNKVRACAEVRIESEHHALPASTTTEELLVLIAELNRRD
                     DVDGILVQMPLPKQIDESAIIEAVDPAKDVDAFHPINVGLLAMGRPRFVPCTPAGIIE
                     LLDRSNIEIAGANACVVGRSQIVGRPVASLLLQRHATVTICHSRTRDLPSVTRQADIL
                     VAAIGRPVFIRGDYIKPGATVIDVGVNKITDANEARALFGDDAEQRIEAIARRGYTLV
                     GDVHPAEADLVAARRTPVPGGVGLLTVAMLMRNTLQAARARRGV"
     gene            1647..2513
                     /locus_tag="VHD88_01555"
     CDS             1647..2513
                     /locus_tag="VHD88_01555"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HVS20498.1"
                     /translation="MSFVLFLCVTTASLACRPRRNPNEKRYDLKGKVVAVNKTDHTAT
                     IEHEDIVGYMPGMTMPFKIKNDADLEMLKPGDQITGTLVVDDLSSWVEVTSIVEGASL
                     VPEFSNVPGEPKAGDDIPDFGLTNQDGKRIHLAQYRGKALVLTFIYTRCPQPDQCTLM
                     SNNFAAIDQELQKQPELYAKTHLLSITFDPDYDTPRVMRSYGASHTGRYSDETFQHWE
                     FASGTKDEVKGMAQFFGLRYYHDTESSEEQVIHSLRTAVIGPDGKLVKLYRGNEWKPA
                     EIVSDLTAATMK"
     gene            complement(2627..>3244)
                     /locus_tag="VHD88_01560"
     CDS             complement(2627..>3244)
                     /locus_tag="VHD88_01560"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF013590.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M13 family metallopeptidase"
                     /protein_id="HVS20499.1"
                     /translation="AYYNPSMNEIVFPAGILQWPFFDAQADDAINYGGIGVVIGHEMT
                     HGFDDSGAKFDPQGNLKNWWTDDDLVKFKARAQCIIDQFDGYEVQPGLHEKGKLVTGE
                     SIADLGGLAIAYAAFQKSMQGKPRPPDIDGFTPEQRFFLGYAQIWAQNVRPEYERQLV
                     ITDSHPLGRFRVNGPLSNMPLFAQAFQCKDGEAMVRPPDKRCQIW"
BASE COUNT          695 a          988 c          865 g          696 t
ORIGIN      
        1 ggcgatgcgt tgctccgcct cttctcgcga gaggccgtcg cgcgtcatca aacgctgtag
       61 ctgcacttcg ggtcggcagt ggactacgat cagtttgtca aagcgccgat agccaccgga
      121 ttcgatcatt agcgctgcat cgacaacagc gatggcttgc ggctcctgcc gttcccattc
      181 gcgcattcgc tcgtcctgcg ccgcgatgat gaacgggtgc aggatcgagt taagttgcgc
      241 tcgcttctct tcgtcagcaa acacaatcgc tcccagtttg gcccggtcga gacttccatc
      301 agctttcaga acgtttgtgc cgaaagcgtt aacgaccgct ttcaatcccg gcgtgttcgg
      361 cgcgacaact tcgcgcgcga ccgcgtcggc atcgagaacg cgacaaccaa gttcagccag
      421 caagctgagc acgaacgact tgccaaccgc aatcgatccg gtgagtccaa ccttcagcat
      481 ttctgtaggg gcggggcttg tccccgcccg caccgggcag ggacaagccc ttgcccctac
      541 acaccacgcc gcgcgcgcgc cgcttgcaga gtattcctca tcagcatcgc cacggtcagc
      601 agccctacac caccaggcac cggagtgcgc cgcgccgcta ctagatccgc ttccgcagga
      661 tgaacgtcac caacaagtgt gtaacctcgg cgtgcaatcg cctcaattcg ttgctctgcg
      721 tcatcgccaa aaagcgcgcg agcttcgtta gcatccgtaa tcttgtttac tccgacgtct
      781 ataaccgtcg ccccgggctt gatgtaatca ccacgaatga agactggccg gccaatcgcc
      841 gcaaccaaaa tgtcagcttg ccgagtgacg gacggcaagt cgcgggtgcg tgaatgacag
      901 atcgtcaccg tcgcgtggcg ttgcaggagc aaactcgcga ccgggcggcc gacaatctga
      961 ctgcgaccca ccacacacgc gttcgcgccg gcgatttcga tattgctgcg atcgagcaac
     1021 tcgataattc ccgctggcgt gcacggcaca aaccgcggcc ggcccatcgc cagcaagcct
     1081 acattgattg gatgaaaggc atcgacatcc tttgccggat cgactgcttc gatgattgcc
     1141 gactcgtcga tttgttttgg taacggcatt tgaaccagaa ttccgtcaac gtcgtcgcgc
     1201 cgattaagtt cagcgatcaa taccagcaac tcttcggtag tcgttgacgc tggcagcgca
     1261 tgatgctccg attcaattct aacttcagcg caagcacgca ccttgtttcg cacatacacc
     1321 gcggaggcat cgtcgtcgcc aaccaaaacc gcggcaagac acgccttgac ttgatgttgc
     1381 acccgcagcc ggcggacttc cgcggcgact tcctggttga tttgctccgc gatgcggcgt
     1441 ccgtcgagga tttctgcacg ctttgcttcc acggtcacca tgagcgggaa tcgtagcata
     1501 caaccgcctc agctccgttc tgtttttccg cgtgaacttg agacgctcag tcaaagccgc
     1561 taccctatcc gcatcttaga actttgattg ggagtagtaa tcatttgaaa ccaaccacgc
     1621 gtaacagaag ccgtgccatt ttccgtttga gctttgttct ctttctttgc gtcacgaccg
     1681 cgagtttagc gtgtcgcccg cgacgcaacc cgaacgaaaa gcggtatgac ttaaaaggca
     1741 aagtcgtcgc cgtgaacaag accgaccata ctgcaacgat cgaacatgaa gacatcgtcg
     1801 gttacatgcc cggcatgact atgccgttca agattaagaa cgatgccgat ctggaaatgt
     1861 taaagcccgg cgaccaaata accgggacgc tggttgttga cgatttgtca tcgtgggttg
     1921 aggtcacctc aatcgttgag ggcgcgtcgc tggttccgga gttttcaaat gtgcctggcg
     1981 aaccaaaagc cggcgacgac atccccgact ttgggctaac gaatcaagat ggcaagcgaa
     2041 tccatctcgc gcagtatcgc ggcaaggcgc tggtgctgac gttcatctac acgcgctgcc
     2101 cgcagccgga tcagtgcact ttgatgagca acaactttgc cgctatcgat caggaattgc
     2161 agaaacagcc cgagctttac gcgaagacgc acctcttgag catcacgttc gatcccgatt
     2221 acgacacgcc gagagtcatg cgcagttatg gcgcttcaca caccggtcgt tactcagacg
     2281 agacgtttca gcattgggag tttgcttcag gaaccaagga cgaagtgaaa ggcatggcgc
     2341 agtttttcgg tctgcgttat taccacgaca ccgagtcgtc agaggaacag gtcatacact
     2401 ctctgcgcac ggcggtcatc ggcccggacg gcaaactcgt gaagctctat cgaggaaatg
     2461 agtggaagcc tgctgagatc gtgagcgact taactgctgc aacgatgaag tgaattttgg
     2521 agaacggttc ctgccgcgtg atttcgtgga tcgagtcgtt gtctatctca accgatccgc
     2581 gaaaccacac gacgatccgc gaagcacgca tcgatgcgtg cgcttcttac caaatctgac
     2641 agcgcttatc cggcggccgc accatcgcct cgccatcctt gcactggaaa gcttgcgcga
     2701 acagcggcat gttcgacagc ggcccgttca cgcggaagcg tcccaacgga tgcgagtctg
     2761 tgattaccaa ctggcgctcg tattccggtc gcacgttctg cgcccagatt tgcgcgtagc
     2821 cgagaaagaa ccgctgctcg ggcgtgaagc cgtcgatgtc cggcggtcgc ggctttcctt
     2881 gcatcgattt ctgaaacgcc gcgtacgcga tcgccagccc gcccaggtcg gcaatgctct
     2941 cgccggtcac gagcttaccc ttctcgtgca agcctggttg cacttcgtag ccgtcgaact
     3001 gatcgatgat gcactgcgct cgcgccttga actttacgag gtcatcatcg gtccaccagt
     3061 tcttcaagtt cccctgcgga tcgaacttcg cgccgctgtc gtcaaacccg tgtgtcatct
     3121 cgtgtccaat cacgacgccg atgccgccgt aattgatcgc gtcgtcggcc tgggcgtcaa
     3181 aaaacggcca ttgcaggatg cccgccggaa aaacgatttc attcatcgac ggattgtagt
     3241 aggc
//
LOCUS       DASZZE010000082         2047 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_182138, whole genome shotgun sequence.
ACCESSION   DASZZE010000082 DASZZE010000000
VERSION     DASZZE010000082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2047)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2047)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2047
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_182138"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            341..1156
                     /locus_tag="VHD88_01565"
     CDS             341..1156
                     /locus_tag="VHD88_01565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20500.1"
                     /translation="MRGFIERYTVDRGSLTRSYPVSISPARAARFRQFYSDCLTQMQK
                     LDFDAMSQAGKVDYLLLKNHLEYELRQLDIQAKQLVEIQPLIPFGQTIIDLEEARRRM
                     EPIDSAKTAALLTNLRKQIDDTRHSVEAGLRSDSPDAIKAKKTVAHLAVGALNNLRNV
                     LRNWYTFYNGYDPIFTWWNEEPYKALDQTLATYASFLGERVVGLRPEGQQTTAGATLN
                     RGPSAGPGQAQPSQRAGAATARAGDTSDIVGDPIGREALLSGLQSETLPHRPP"
     gene            complement(1197..>2047)
                     /locus_tag="VHD88_01570"
     CDS             complement(1197..>2047)
                     /locus_tag="VHD88_01570"
                     /inference="COORDINATES: protein motif:HMM:NF012964.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HVS20501.1"
                     /translation="RLYQKIHTEQGSPLLVNTRDLGRALGEELAARNDRYVVEFAMRY
                     GNPSIGFALKRLCEANVSRIIVAPLYPQYAESSYKTAVVETEKRANEIGCGNLLSFLP
                     PFYDRPGFIHACAQRLTENLDRDPIDHIVFSFHSLPVQQVKRLDQTQQHCCVKPDCCD
                     QIGAANRNCYRAQCVFTARAIARELHLTEDAYTISFQSRLGRAKWLEPQTEDVLRDLA
                     GRGVKSVAVFCPSFVADCLETLEEIAIRGRKVFVDAGGERLMLIPALNVHPQWVKALS
                     DWIVAL"
BASE COUNT          508 a          578 c          538 g          423 t
ORIGIN      
        1 cgtcgtatca attacgaaga cgcatcttaa cagagccttt tcgggtcgcg caaggagtgg
       61 atcatatcct cagcaacttc caccggtttg cgttagtata tgcgcccgtc agacagtctc
      121 agatatcaat tcgagggagc atgaaaatga ttccagtacg aagttcgtca accaccgtga
      181 tagtttccgc gttcattctt cttgccggtt tcttaatgcc aagtccggcg caaacatcca
      241 ggaacaccag gcgtgcggat tcgaccgcga gcactaaacc tgcaaaacgg agcagcaacg
      301 aagtccttga cgccagcgaa ctcaacaccc cgagagcgaa atgcgcgggt tcatcgagcg
      361 ctacacggtg gatcgcggta gtctgactcg ttcatatccc gtttcgatct cgccggcgcg
      421 cgcggcgcgt ttcaggcaat tttattcgga ctgtttgact caaatgcaga agctcgattt
      481 tgatgcgatg agccaggcgg gcaaggtcga ttacttgctg ctcaagaacc atctcgaata
      541 cgaactgcga caactggaca ttcaggcgaa acaactcgtg gagatccagc cgctgattcc
      601 gtttggccag accatcatcg atctcgaaga agcgcgacgc cgaatggagc cgatcgattc
      661 cgcgaagacg gcggcgttgc tcacgaatct gagaaagcag atcgacgaca cgcgccacag
      721 tgtcgaagcg ggattgcgaa gcgatagccc tgacgcaatc aaggccaaga agaccgtcgc
      781 acatctcgcg gtcggtgctc tgaataatct gcgcaacgtc ctccgaaact ggtacacgtt
      841 ttataacggc tacgatccaa tcttcacgtg gtggaatgaa gagccttaca aagctttgga
      901 ccagacgctc gcaacctatg cctcatttct cggagaacgt gtagttgggt tgcgaccaga
      961 aggccagcag acaacggctg gcgcaacgct gaatcgcgga ccaagcgctg gtccggggca
     1021 agcgcagcct tcgcaacgcg cgggcgcagc gactgcgcgg gccggcgaca ccagcgacat
     1081 cgtcggcgat ccgatcggac gcgaagcgct gttgagtgga ttgcagtccg agactcttcc
     1141 tcatcgcccg ccataagccg ctgtacgcta tctaaaacac gcggcgagcg caaaagttaa
     1201 agggccacaa tccaatcgga aagagctttc acccattgcg gatgaacatt tagcgcggga
     1261 atcagcatca atcgttcgcc gccggcatca acgaacacct ttcgtccgcg gatggcgatt
     1321 tcttccagag tctcaagaca atcggcgaca aatgacggac aaaaaaccgc gacgctcttc
     1381 actccgcgac cagctaaatc tcgaagaaca tcttcagtct gcggttccag ccatttggcg
     1441 cgacccagac gagattgaaa cgagatcgtg taagcgtctt cggttagatg aagttctcgt
     1501 gcaatcgctc gcgcagtgaa tacgcactgg gcgcgatagc agtttcggtt cgcggcacca
     1561 atttgatcgc agcagtcggg tttgacgcag caatgttgct gagtttgatc cagacgcttg
     1621 acctgttgaa ccggcagact gtgaaagctg aacacaatgt ggtcaatcgg atctctatca
     1681 aggttctcgg tcaaccgctg cgcgcacgcg tggataaaac ctggtcggtc atagaacggc
     1741 ggaagaaacg acagaaggtt tccacagcca atctcgtttg ctctcttttc cgtttcgacg
     1801 accgccgtct tgtaactcga ctccgcgtac tgcggataga gcggtgccac gatgatccgc
     1861 gacacgttcg cctcacacag cctcttcaat gcaaaaccga tcgaaggatt cccataacgc
     1921 atagcgaact caaccacgta acgatcattt cgcgcggcta attcttcacc aagcgctcgt
     1981 ccaagatcac gcgtgttaac caacaagggc gagccctgct ctgtgtgaat cttctgataa
     2041 agacgtg
//
LOCUS       DASZZE010000083         3328 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_198094, whole genome shotgun sequence.
ACCESSION   DASZZE010000083 DASZZE010000000
VERSION     DASZZE010000083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3328)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3328)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3328
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_198094"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            130..1209
                     /gene="murG"
                     /locus_tag="VHD88_01575"
     CDS             130..1209
                     /gene="murG"
                     /locus_tag="VHD88_01575"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: protein motif:HMM:TIGR01133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050511 -
                     undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HVS20502.1"
                     /translation="MRALIAAGGTGGHIYPGIAVANEIMRRDPSSVVRFVGTARGLET
                     RLVPKAGFELSIIESAGLKNVRPVAKLRGLILLPKSFFGARRVIRKFRPDIVVGAGGY
                     VSGPVLLAASMMRLPTMVMDSNALPGWTNRVLARFVDKAAVSFAEALPYFRGKGVLTG
                     NPVRNEFFEIPVKQRDSSRFALLVFGGSQGARAINEAMIAALAHLESHKSALHVTHQT
                     GQADCERIRGGYEAASWSDSADVKPYIDDMVTEFAKADLIVCRAGATTTAELVAAGKA
                     AIMIPFPLAADDHQRKNAEALASARAARMILQSELSGDRLAREIESLIATLGEIDRMG
                     AASRKLARRDAAATTVELMEELLQR"
     gene            1285..2688
                     /gene="murC"
                     /locus_tag="VHD88_01580"
     CDS             1285..2688
                     /gene="murC"
                     /locus_tag="VHD88_01580"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: protein motif:HMM:TIGR01082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008763 - UDP-N-acetylmuramate-L-alanine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HVS20503.1"
                     /translation="MFRRFQHIHFVGIGGIGMSGIAEVLENLDFRVSGSDLKKSDVTA
                     HLEELGVLVTEGHAAENVGDAHVVVRSTAVRDDNPEVIEARRRSIPVIPRAEMLAELM
                     RMKPHTVAVAGSHGKTTTTSMVATVLGIAGLDPTFVIGGIVRTYRANARLGKSDLMVV
                     EADESDRSFLMLTPTIAVVTNIDREHMDYYHDMEDVRKCFADFVNKVPFYGAAVLCLD
                     DPHVQAVIPKVERRRVTYGLSAQADVSGHEITYDQSFGSSFTVWRGIDVMGSVALRVP
                     GKHNVYNSLAAIAVGLELEVPFEKIAQALGEFSGADRRFQFKGDEAGITVVDDYGHHP
                     TEIKATLSAARVGAPNRRIVVLFQPHRYSRTNDLMDEFASAFNNADVLLVTDIYAASE
                     TPIDGVNAEVLTGRIKSYGHKNAEYVGALENAADILRANVREGDLVITLGAGSVHRAG
                     DQLLALLRGHNAQVAQT"
     gene            2708..>3328
                     /locus_tag="VHD88_01585"
     CDS             2708..>3328
                     /locus_tag="VHD88_01585"
                     /inference="COORDINATES: protein motif:HMM:NF013714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HVS20504.1"
                     /translation="MVLVEENQVTDTAARDAAIAGIAERLGVRAERGRRFAELTSLRV
                     GGAIDWVISPQSEEQAAALVHELEQKEIAWRPLGSGSNILADDGEHHYVIVSLKELKA
                     DPIFDGDRVSVSAGYSLPRLCIDAARHELSGIEGLNGIPGTVGGALWMNAGAYGQEIG
                     TVVESVRVAREGRVTEIPGAEVKWNYRHTSFREGELLLGATLLLQRD"
BASE COUNT          684 a          866 c         1078 g          700 t
ORIGIN      
        1 ctcggcaagc ccgcgagtta cggggaggaa gattacgaaa ttgattggca acccgagcgc
       61 cctccgaaaa aaaggcgagc ggtacgtcag cgcgtgcctg cggttgcgcg tgcgcgctac
      121 gggtgagcga tgcgtgcgct aatcgcagcc ggcggcaccg gtgggcacat ttatccgggc
      181 atcgcggtgg caaacgaaat catgcgccgc gatccttcgt cggtcgtcag atttgtcggc
      241 acggcgcgcg gattggaaac tcgtttagtg ccgaaggcgg gatttgaact ttcgatcatt
      301 gaaagcgcgg gactgaaaaa cgtccgtcca gtcgcgaagc ttcgcggcct gatcttactg
      361 ccgaagagtt tcttcggagc gcgtcgcgtg attcgcaagt ttcgtccaga catcgtggtg
      421 ggcgcgggcg gttacgtttc cggcccggtg ctgttggcgg catcgatgat gcgtctgccg
      481 acgatggtga tggattcgaa cgctctgccc ggatggacga atcgagtgtt ggcgcgattc
      541 gttgacaagg ctgccgtttc gttcgcggaa gcgttgcctt actttcgcgg caagggagtg
      601 ttgaccggca atccggtgcg caatgagttc tttgaaattc cggtaaagca acgcgatagt
      661 tcgcgatttg ccttgctggt gtttggcggc tcgcaaggcg cgcgcgcgat caatgaagcg
      721 atgattgcgg ctttggcgca tcttgaatcg cacaagagcg cgttgcacgt gacgcaccaa
      781 actggccagg cggattgcga aaggattcgc ggcggatacg aagcggcgag ttggagcgac
      841 agtgccgacg tcaagccgta cattgacgac atggttacag aatttgctaa agccgatttg
      901 atcgtttgcc gcgccggcgc gactacaact gcggagttgg ttgccgccgg gaaggcagca
      961 atcatgattc cgtttccgct ggctgccgac gatcatcagc gcaagaacgc ggaagcgctc
     1021 gcgtcggcca gagcggccag aatgattctg cagagcgaat tgagcggcga ccgtttagcg
     1081 cgggaaatcg aatctttgat cgcgacgctt ggcgagatcg accggatggg agccgcaagc
     1141 cgcaaactag cgcgacgcga cgcggcggcg acgacggttg agttgatgga agaattactg
     1201 caacgatgaa ttcggaacgc gaaactatga acgacaggac tctagccgtt catcattcat
     1261 agttcatcgt tcacacttga agttatgttt cgtcgtttcc aacatatcca cttcgtcggt
     1321 atcgggggca tcggcatgtc cggcattgct gaggtgctgg agaatcttga cttccgggtg
     1381 tcgggttcgg atttgaagaa gtcggatgtg acggcgcatc tagaagagct gggcgtgctg
     1441 gtgaccgagg gacatgcggc agagaatgtc ggcgacgctc acgtagttgt gcgctcgacc
     1501 gcggtgcgcg acgacaatcc agaagttatc gaagcgcgtc gccgatcgat tccggtcatc
     1561 cctcgtgctg agatgctggc cgagttgatg cgtatgaagc cgcacacggt tgcagtcgcc
     1621 ggctcgcacg gcaagacgac gacgacttca atggtcgcca ccgtgctggg aattgccggt
     1681 ctcgatccga ctttcgtgat tggcgggatc gtgcgcactt atcgggcgaa cgcgcggctg
     1741 ggcaagagcg atttgatggt cgttgaagct gacgaaagcg atcgctcgtt cctgatgctg
     1801 acgcctacaa tcgctgtcgt gaccaacatc gatcgcgagc acatggacta ctaccacgac
     1861 atggaagacg tgcgaaagtg ctttgccgat ttcgtgaata aggttccgtt ttacggcgcg
     1921 gcggtgcttt gcctcgacga tccgcacgtg caggcggtta ttccgaaggt cgagcgtcgt
     1981 cgtgtcacgt atggattgag cgcgcaggcc gacgtctctg gccacgagat cacttacgat
     2041 caatcgttcg gatcgagctt caccgtttgg cgaggcatag acgtgatggg ctccgtagcc
     2101 ttgcgcgtgc ccggcaagca caacgtttac aactcgctgg cagcgatcgc cgtcgggctc
     2161 gagctggaag tgcccttcga aaagatcgcc caagcactcg gcgaattttc gggcgctgac
     2221 cgtcgctttc agttcaaagg cgacgaagca gggattacgg tggtggatga ttatggccat
     2281 cacccgactg agatcaaagc gacgctgagc gcggcgcgag tcggcgcgcc caaccggcgc
     2341 atcgtcgtgc tgtttcagcc gcaccgctat tcgcgcacga acgatttgat ggacgaattc
     2401 gccagcgctt tcaataatgc cgacgtgctg ctggtcacag atatttatgc ggccagtgag
     2461 acaccgattg atggagtgaa cgcggaagtg ttgaccgggc gaatcaagag ctacggacac
     2521 aagaacgcgg aatacgtcgg cgcgctcgag aatgccgccg acattctgcg cgcgaatgtt
     2581 cgcgaaggcg atctcgtgat taccctgggc gcgggttcag tccatcgtgc gggtgatcaa
     2641 ttactggcgc ttctgcgcgg ccataatgct caggtcgcac agacctagct tcagtggttt
     2701 cttgaaaatg gttttagtag aagaaaacca agttaccgat acagccgcgc gcgatgcggc
     2761 gattgcaggc atcgcagagc gtttaggtgt gcgcgccgaa cggggtcggc gctttgccga
     2821 gttgacgagt ctgcgcgtgg gcggcgcgat cgattgggtg atctctccgc agagcgaaga
     2881 gcaagcggca gcgctggtgc atgaactgga acagaaagaa atcgcctggc gaccgcttgg
     2941 ttccggcagc aacatcctcg ccgatgacgg cgaacatcat tacgtaatcg tgagcttgaa
     3001 agaattgaaa gcggatccaa tcttcgacgg cgatcgagtc tccgtgagcg ccggttattc
     3061 tttgccgcgt ctctgcattg acgctgcgcg gcacgaactt tcgggaatcg aaggcttgaa
     3121 cggaattccc ggcactgttg gcggcgcgtt gtggatgaac gccggcgcat acgggcagga
     3181 gatcggcacg gtggtcgaga gcgtgcgtgt cgcccgagaa ggtcgcgtca ccgaaattcc
     3241 cggtgcggaa gtgaagtgga actatcgtca cacgtcgttt cgcgaaggcg aattgcttct
     3301 gggcgcgacg ttgcttttgc agcgtgac
//
LOCUS       DASZZE010000084         3682 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_246578, whole genome shotgun sequence.
ACCESSION   DASZZE010000084 DASZZE010000000
VERSION     DASZZE010000084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3682)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3682)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3682
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_246578"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..644)
                     /locus_tag="VHD88_01590"
     CDS             complement(<1..644)
                     /locus_tag="VHD88_01590"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HVS20505.1"
                     /translation="MISNTAKKYFAPALVLSALALFFFAMVILITPARAQKIKQLPPP
                     PPGPHYKPKPTPTPKPTPEPEYEVVRISSNLVVVPVSVTDAKGQPVLGLKANEFHVEE
                     DGRAQEIAQLGDPEQVPVDIALLLDVSASVDARFAFEQKAAADFLRQVMKTGDRATVF
                     AIDETPRLVQPLTTAALASDKLMTIAPAKGYTAFFDSVLAAEKYLEQSSSQGRR"
     gene            complement(791..1834)
                     /locus_tag="VHD88_01595"
     CDS             complement(791..1834)
                     /locus_tag="VHD88_01595"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HVS20506.1"
                     /translation="MISSSFRMFRSFALAFGLALILSPLALGQDSTTKTTAAGTTRAR
                     SVANGERMKIKGVVVRRDADTFTLRDLNGNDTVVRLTDSTSVKTNGGFLRSGQNYGAT
                     NILRGLNLEAEGRGGSNGELVAERIRFNETDLRTARAVESRATPLEERAAASEGRLSE
                     VEQNAQKLSGQLDELAAVSNAARGGAKAAQQTADAAISGVNATNDRISALDDYVPQDS
                     AAVNFRVGSAVLLPESKTKLDAIATKALNAKAYVVEVTGHADATGNVARNRRLSQQRA
                     DAVIRYLVEQHKIPLRRIITPYGFGASEPIADNKTRAGRAENRRVEVKILVNKGLTQP
                     APTMNPGSSGSGQ"
     gene            complement(2211..>3682)
                     /locus_tag="VHD88_01600"
     CDS             complement(2211..>3682)
                     /locus_tag="VHD88_01600"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012424.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="dihydrolipoamide acetyltransferase family
                     protein"
                     /protein_id="HVS20507.1"
                     /translation="PQMGESIAEGTITKWMKNVGDHVDRDEPLFEISTDKVDAEIPSP
                     AAGTLTEIRFKEGETVEVNTVVAVLDGNGAKPPAEAEAKPEASAPAKEEAAVPLETTE
                     PAKAEAPAAVERPKPVITNDPPVKAAPPPAPPSTHKTEVKPLVKKGEAVRAAQAPVPP
                     RRDDGGAASAEELRRTKSSPLVRKIAEEHGIDIKQLDGTGMSGRVTKNDILSFIESGA
                     PAQASVAPPVKAQPTPSISAPQVGAPGTQHVLAVKPAEGDRVEQMSVMRKKIAEHMVL
                     SRRTSAHVTTVYEIDLTKVAKLRDENRKSFLDRTGTKLTYMPFIFKAVTDAIRKFPAF
                     NSQVSGDQIIYKRDVNLGMAVALDWGLIVPVIKRADDLSISGLARAANDLADRARTKQ
                     LKPDEVGGGTFTITNPGVFGGLFGTPIINQPQVAILGVGKIEKRAKVLTTPDGEDYIA
                     IRHMAYFALSFDHRIIDGADAEKFLAYIKEHLESAQFAL"
BASE COUNT          713 a         1019 c         1050 g          900 t
ORIGIN      
        1 ctgcggcggc cttgtgaaga ggactgttcg agatattttt cggcggccaa gacagagtca
       61 aagaaagctg tgtaaccttt cgctggagcg atggtcatca atttgtcgga agccagcgcg
      121 gcggtggtta atggctgaac gaggcgcggc gtctcgtcaa ttgcaaaaac tgtcgctcga
      181 tcacccgttt tcataacctg ccttaagaaa tccgcggcgg ctttctgctc gaaagcgaat
      241 cgcgcatcga cactcgccga cacgtcgagc aagagagcga tatcgaccgg cacttgttcg
      301 ggatcgccga gctgcgcgat ctcttgcgcg cgcccgtctt cttctacatg aaactcgttc
      361 gctttcaagc cgagcacggg ctggcctttc gcgtcggtga ctgaaaccgg caccacgacg
      421 agattcgacg agatgcgcac gacctcgtac tcaggttcgg gagttggctt cggtgttggt
      481 gtgggttttg gtttgtagtg cggcccgggc ggtggtggcg gcagttgttt gatcttctgc
      541 gcgcgtgctg gggtgataag aataaccatc gcgaagaaaa ataaagccag cgcggaaaga
      601 accagcgccg gcgcaaaata tttcttcgct gtatttgaaa tcattaacca actcctcatg
      661 ccgccagctt tcatcgttgc tggcctaact gatcatttga cgccggcggg cggcatgatc
      721 gttggcgctt cttgcgcaac ttgttaaaag ttgcgtttgt tgatagcggc acgcaagttt
      781 acaacttgcg ctattgtcct gagccgctgc ttcctggatt catcgtcggc gcgggctgcg
      841 tcagaccttt gttaaccagg atcttcactt cgacgcgacg gttctccgct cgacccgcac
      901 gggttttgtt atcggcgatc ggttccgacg cgccaaagcc gtacggcgtg atgatacgac
      961 gcagcggaat cttgtgctgc tcgaccagat aacgaatcac cgcgtcagcg cgttgttggc
     1021 tgagccgtcg attgcgtgcc acgtttccag tcgcatcggc gtggcccgtc acttcgacca
     1081 cataggcttt cgcattcaaa gccttcgtgg caatcgcgtc cagctttgtc ttcgactcgg
     1141 gcaacagcac agcgctacct acgcggaagt tcaccgctgc tgaatcctgc ggcacgtagt
     1201 cgtcgagcgc agagatgcgg tcgttggttg cgttcactcc ggagatcgct gcgtcggcag
     1261 tttgttgcgc ggcctttgcc ccgccgcgag ccgcgttcga tacggccgcg agttcgtcga
     1321 gttgtccaga gagtttttgc gcgttctgct caacctcgct gagacggcct tccgaagcgg
     1381 cggcgcgttc ttcgagtggc gtcgccctcg attcaaccgc gcgcgccgtg cgcagatcgg
     1441 tttcgttaaa tcttattctt tccgcgacca gttcgccgtt cgagccgcct cgaccttcag
     1501 cttccagatt aaggccgcga aggatgttag ttgcgccata gttctggccg ctgcgcagga
     1561 atccgccatt agtcttgaca gaagtgctat cagtcagccg aacgacggtg tcgttgccat
     1621 tcagatcgcg aagggtgaac gtgtcggcgt cacgccgcac gactacgcct ttgatcttca
     1681 ttctctcgcc attggcgacc gagcgcgctc tggttgttcc agccgcggtt gtctttgttg
     1741 tcgagtcttg tccgagggcc aaaggggaaa gaatcagcgc caagccgaag gccagggcaa
     1801 atgaccgaaa cattctgaag ctgctactga tcatagtttt gaactcctta agttaaaagg
     1861 ctaggacggc gcaacaggcg cgtcgggttt acgtgagttc agatatcaaa ctcacgccgt
     1921 gcgttgtctg cttgaatttt cagcagacag gatttcgtaa agaaccaatg acgccgatga
     1981 acgacagtca tcaactctgg tgatattacc gaacaattga atcaagtcaa gagtgatcgc
     2041 gagggaaagc actctttcga ggcagttagc aaagattcat cactcgttcg ctacgcgatt
     2101 gcaacagaga gggtaattta ttgggagatc gtttagaagc gggacttgtc ccgctctcag
     2161 aaaaggaggc gcacaagtgc gccgtctaaa ctagattcga taaggcacga tcaaagcgcg
     2221 aactgcgcgc tctcgagatg ctccttaata tatgcgagaa acttttccgc gtcggcgcca
     2281 tcgatgatgc gatgatcgaa actgagcgcg aagtaagcca tgtgacgaat cgcgatgtaa
     2341 tcctcaccgt cgggtgtcgt caagaccttt gcgcgttttt cgatcttgcc gacgccgaga
     2401 attgcgacct gcggctgatt gatgatcggc gtgccgaata agccgccgaa aacgcccggg
     2461 ttcgtgatgg taaacgtgcc gccgccgact tcatccggtt tcagttgctt tgtgcgtgcc
     2521 cgatctgcga gatcatttgc cgcgcgcgcg agacctgaga tcgataaatc gtcggcgcgc
     2581 ttaatcaccg gcacgatcaa tccccagtca agcgcgaccg ccatcccgag attgacgtcg
     2641 cgtttataga tgatctgatc gccgctaact tgcgagttga aagccggaaa cttgcgtatc
     2701 gcatccgtga ctgccttgaa gatgaacggc atgtaagtga gtttcgtgcc ggttcgatcc
     2761 agaaatgatt tccggttttc gtcgcgcagc ttcgcgacct tggtcagatc gatttcatag
     2821 accgtcgtta cgtgcgcgga ggtgcggcgc gaaagcacca tgtgctcggc gatcttcttt
     2881 cgcatcacgc tcatctgttc gacgcgatcg ccctcggcgg gtttcactgc gagaacatgc
     2941 tgtgttccag gagcgccaac ttgaggagct gatattgaag gcgtcggctg cgctttcacg
     3001 ggcggtgcga ctgaggcttg agcaggggcg ccggattcga taaagctcag gatgtcattc
     3061 ttggtaaccc ggccgctcat ccccgtgccg tcaagttgct tgatatcgat gccatgttct
     3121 tccgcaattt tgcgcaccag cgggctcgac tttgtgcgac gtaattcttc ggcgctcgct
     3181 gctcccccgt cgtcgcgacg cggaggcaca ggcgcttgtg ccgcacgcac cgcttcgccc
     3241 ttctttacca ggggttttac ttcagtctta tgagtcgatg gcggtgctgg cggcggcgca
     3301 gccttaaccg gcgggtcatt cgtgataact ggtttaggtc tttcgactgc ggcaggagct
     3361 tctgcctttg ctggttcagt cgtttctaaa ggcacagcag cttcttcttt cgccggcgcg
     3421 ctcgcttcag gttttgcttc cgcttccgct ggaggtttag cgccattccc gtcgagaacc
     3481 gcgacgaccg tgttcacttc aaccgtttcg ccttctttga atctgatttc ggtcagagtg
     3541 ccggccgcag gcgaaggaat ctcggcatca actttgtcgg tcgagatttc gaacaacggt
     3601 tcgtcgcgat cgacgtgatc gccgacgttc ttcatccact tggtgatcgt tccttccgcg
     3661 atggactcgc ccatctgcgg ca
//
LOCUS       DASZZE010000085         1859 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_182389, whole genome shotgun sequence.
ACCESSION   DASZZE010000085 DASZZE010000000
VERSION     DASZZE010000085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1859)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1859)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1859
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_182389"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..499
                     /locus_tag="VHD88_01605"
     CDS             <1..499
                     /locus_tag="VHD88_01605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20508.1"
                     /translation="IPILAWTFLTLSKRKPLWTREFLVFVIVLCVFDASVQLVGSVGL
                     LNQISAQRAVADSLHAHFQPNSDARIFCDDGTVQALTGIPPEKFLTSFDAPRDREAFL
                     AYLKEKNVEYLVFVSNQDSTPVRLFPDLEYGDYNQSFEPLMSSHTEFFYTSIWLDRAH
                     AEGVK"
     gene            complement(777..995)
                     /locus_tag="VHD88_01610"
     CDS             complement(777..995)
                     /locus_tag="VHD88_01610"
                     /inference="COORDINATES: protein motif:HMM:TIGR02574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="addiction module protein"
                     /protein_id="HVS20509.1"
                     /translation="MGLETREIIDRALELSVEEKARIVDELLSSLNEPDEAIDALWRK
                     EVEDRIETYNAGKLRSVSLEEVLAKYRK"
     gene            complement(1052..>1859)
                     /locus_tag="VHD88_01615"
     CDS             complement(1052..>1859)
                     /locus_tag="VHD88_01615"
                     /inference="COORDINATES: protein motif:HMM:NF014517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="nicotinamide-nucleotide amidohydrolase family
                     protein"
                     /protein_id="HVS20510.1"
                     /translation="ECSIALLPGPPRENQPMYKNHVQARFEKLAGDIHFARRVMRVSG
                     MGESAVDEKIAPVYSQYENPQTTILFNSSEIEIHLRAHGRTESEAEALLDHLSLKIEK
                     ELGNAVFSFRGETMEEVVGRRLAITGFTLAVAESCTGGLIAQRLTNVPGSSKYFVEGL
                     VTYSNESKTRLLGVDKKLIREHGAVSQQVARDMARGVRHIAKTDFGLAVTGIAGPDGG
                     TEEKPVGLVYIALADDAHTEHKRLKLPGDRELIRWRASQAALDMLRRRLI"
BASE COUNT          408 a          536 c          474 g          441 t
ORIGIN      
        1 cattccgatt ctcgcatgga cgtttctgac gctaagcaag cgaaagccgc tatggactcg
       61 cgagtttttg gttttcgtga ttgtgctctg tgtctttgat gcgagcgttc agcttgtagg
      121 atcagttggc ttgctcaacc aaatctccgc tcagcgcgcc gtcgccgatt ctcttcacgc
      181 tcacttccaa cctaactcgg acgcgcgcat cttctgtgac gacggaacgg tgcaggcgtt
      241 gaccggaatt ccaccagaga agttcctgac ttccttcgac gcgccacgcg atcgcgaagc
      301 ctttcttgcc tatctgaaag agaagaacgt cgagtatctg gtgtttgtga gcaatcagga
      361 ttcaactccg gtgagacttt ttccggactt ggaatacgga gattacaacc agtcattcga
      421 accgctgatg agcagtcaca cggaattctt ctacactagc atttggcttg atcgagctca
      481 cgctgaaggc gtgaaataaa tagcccgggg cagagcgcga agcgcggcac gccaagatct
      541 cggcacgcag tttcataagc ccacttcatc gggcgactag cacagatacc ggagaaagcg
      601 cacgacgcta accacacttg ctacagttcg agactagtga cggatgtgta cgtgctgcgc
      661 tatattaggt cagatggacg tactactatt gagatagtaa agtggtgcgg tgcgttgtaa
      721 tactcgaccg cttcgtcaaa ctcttcttgc gcgacgtcaa ggaagcggat gtccatttac
      781 tttcggtact ttgcgaggac ctcttcgagt gaaacggacc gcagcttgcc agcgttgtac
      841 gtctcgatac gatcttccac ttctttccgc cacaaagcat cgatcgcttc atccggctca
      901 ttcaggcttg agaggagctc gtcgacaatg cgagcttttt cttcaacgga aagctcgaga
      961 gcccgatcaa taatctctcg cgtttccaaa cccataactc tccacttcct tcctctgtgg
     1021 gcgtcgccgc tatcatcaaa tcaaaactat ctcaaatcaa ccgccgccgc aacatatcca
     1081 acgccgcctg cgatgctcgc cagcgaatca attcacgatc gccgggaagc ttcaagcgtt
     1141 tgtgttcggt gtgcgcgtcg tcagcgagag cgatgtaaac cagaccgacg ggtttttctt
     1201 ccgtgccgcc atccggcccg gcgatgcccg taaccgccaa tccaaaatca gtcttagcga
     1261 tatgacgaac accgcgcgcc atgtcgcgcg caacctgctg gctgactgcg ccgtgttcgc
     1321 ggataagttt cttatcgacg cccagcaggc gcgtctttga ttcgttcgaa taagtaacca
     1381 gaccttcgac gaaatacttt gaagaaccag gcacgttcgt cagtcgttga gcgatcaagc
     1441 cgccggtgca gctctcggcc acggcgagcg tgaacccggt aatcgccaga cgccgtccga
     1501 caacttcttc catcgtctcg ccgcgaaacg aaaagaccgc gttgccgagt tccttctcga
     1561 ttttcagcga gagatgatcg agcaaagcct cggcttcgct ttccgtgcgg ccgtgcgcgc
     1621 gcagatggat ttcgatttcg ctgctgttga agagaatcgt tgtctgcgga ttttcgtact
     1681 gcgaatatac gggcgcgatc ttttcatcaa ccgccgattc gcccatgccc gagacacgca
     1741 ttacgcggcg cgcaaaatga atgtcgcccg ccaatttttc aaagcgcgcc tgcacgtgat
     1801 tcttgtacat gggctggttt tcgcgcggcg ggcccggcaa gagcgcaatc gagcactct
//
LOCUS       DASZZE010000086         6048 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_18793, whole genome shotgun sequence.
ACCESSION   DASZZE010000086 DASZZE010000000
VERSION     DASZZE010000086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6048)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6048)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6048
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18793"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..824)
                     /locus_tag="VHD88_01620"
     CDS             complement(<1..824)
                     /locus_tag="VHD88_01620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20511.1"
                     /translation="MLSEAVALYHDLLADDELARTSLALLDEGLEHAKLIFGGRRLSP
                     YLRPHFVAEEDFARVCRVCETVWSAIEKVKDAAVANESLLDELGLTEIERELVKIDPG
                     YAAVSPTARLDSFLTDNAYSFVELNGESPAGIAYADAAYDIFAELPVMKRFAESYNLR
                     RFEGRPLMLQLLLNCHEEFLGRKADRAPRIAIVDLKGMPTLKEFELFCEYFEAQGYPS
                     IIASPDELEFRDGRLRAGEFEIDIVYKRLLVNEYLPIMNEHPALLDAYRAHAVCMV"
     gene            complement(1006..2274)
                     /locus_tag="VHD88_01625"
     CDS             complement(1006..2274)
                     /locus_tag="VHD88_01625"
                     /inference="COORDINATES: protein motif:HMM:NF019403.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heparan-alpha-glucosaminide N-acetyltransferase
                     domain-containing protein"
                     /protein_id="HVS20512.1"
                     /translation="MTDSTATNGASPEAQDASSPKPTRSRIDSIDLLRGIVMVVMMLD
                     HTRDFVHYGALRFDPLDLTQTNTALFLTRWVTHFCAPVFVFLAGTGIYLQFARGKKKS
                     ELSRFLITRGLWLIVLEFTAVRLGAFFSFDPRFLALVQVIFVIGASMIILAALIHLPL
                     KVVGAFGVVMIAFHNLLDRFPVQPWQGPNSPVPSVGAKLWMVLHQPGFFPIARFPSPI
                     VFVLYPLIPWIGVMAAGYAFGALFKKDLQLRRRWLLIIGGVATILFVMLRAIDEYGEP
                     IHWARQKNAVFTLLSFLNTTKYPPSLLFLLMTLGPAIAALACFEVLKRGSISRFFITF
                     GRVPLFFYLLQWPTAHLISVLLHWAFGKPVAWLFKSPIGIFENPPKGNGFNLPVVYAA
                     WIAGVLLLYPLCKWFAGVKARRRDWWLSYL"
     gene            complement(2370..3977)
                     /gene="serA"
                     /locus_tag="VHD88_01630"
     CDS             complement(2370..3977)
                     /gene="serA"
                     /locus_tag="VHD88_01630"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: protein motif:HMM:TIGR01327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004617 - phosphoglycerate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HVS20513.1"
                     /translation="MPTQQTKILVADDVSDSGLEPLRAAGFALERKTGLGPESLREAL
                     RDCDALILRSETKVTAAVMDHAPKLRVIGRAGVGVDNIDVPAATARGIVVMNAPDGNT
                     ITTAEHTLALLISLARNVPQASSSLKAGKWARKSFIGVELQGKTLGIIGLGRIGRAVA
                     VRARSFGMKIVAHDPFIAAEQAHDLEIELARLDEVFARADFLTVHTPLTAETRGVVGR
                     EAFAKMKRGVRVINCARGGLVDEEALCEAIKSGIVAGAALDVFAQEPPPADHPLLSLD
                     EVIATPHLGASTTEAQEGVAFTVAEQMRDYLLTGALRGAVNVPALGAKDLGTLRPYIA
                     LAESLGRLQAQLVDSAVREVKLELAGEIVELDATPIARSFLAGLLRDVSARVNIVNAF
                     LIGEERGITVTTSYVRSSGESAPAISTRVVCEGGEQSASGTVFGSPGGAREGRITEIN
                     DFHVEAIPRGHMLVMRNRDVPGVIGRIGTVLGDRGINISHFHLGRRERGREAMAVVEI
                     DAPVDVETLAALGEVEQIISVRQIDLG"
     gene            complement(3990..4565)
                     /locus_tag="VHD88_01635"
     CDS             complement(3990..4565)
                     /locus_tag="VHD88_01635"
                     /inference="COORDINATES: protein motif:HMM:NF016489.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HVS20514.1"
                     /translation="MNPVPSQSNRRSASDYIALAIATCGVGYIPIAPGTWGSLVAVGL
                     YLVLRSSALALQHRLARTNSLALFDPGVLFVAIELLVITLVTLIGFWAASRAERIFQK
                     KDPGKVVIDEVAGQLIALLPVPLWVIGPWRVWIVVAFLLFRAFDIIKPYPIRRLEALE
                     SGLGIVVDDLAAGAYAAVMVSAMMAVFAILS"
     gene            complement(4570..5925)
                     /gene="rimO"
                     /locus_tag="VHD88_01640"
     CDS             complement(4570..5925)
                     /gene="rimO"
                     /locus_tag="VHD88_01640"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR00089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008172 - S-methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0018339 -
                     peptidyl-L-beta-methylthioaspartic acid biosynthetic
                     process from peptidyl-aspartic acid [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HVS20515.1"
                     /translation="MKVGFISLGCPKNLVDSEVMMGQLKQKGYEITANAEEADTVVVN
                     TCGFIDAAKKESIDAILEAARLKTEGKAKRLVVAGCLVERYRDELKAEMPEIDAFIGT
                     SQINDILTVCDPKTNTRSLPVIPLGNQSATYLYDESTPRVLATPSHYAFIKIAEGCDR
                     PCAFCFIPQMRGHFRSRRFGSIVAEAQQLAEEGVKELILVAQDSSRYGEDLGKQDALA
                     HLLRELSHTDGIEWVRVMYTYPTHISDGFLDVLAEEPKAVKYLDMPLQHASQKVLKLM
                     KRGGSRASLERLIARVRQRVPGIAVRTTFITGFPGETDEDFEELLTFVRDIEFDRVGV
                     FTYSDEEGTPAYDLPNKVEPKIAKQRRAQLMKAQARISRRRNKARVGETVRVLFEGES
                     KESELLWQGRMETQAPDIDGCVLINDAPENFTPRAGEFVNVLIEEAHEYDLLGRIVEP
                     N"
BASE COUNT         1407 a         1793 c         1618 g         1230 t
ORIGIN      
        1 ttaaccatgc acaccgcgtg cgctcgatac gcgtcgagca gagccggatg ctcattcatg
       61 attggcagat attcattgac cagcaggcgc ttgtaaacga tgtcgatttc gaattcaccg
      121 gcgcgcaaac gaccgtcgcg aaactcaagc tcgtccggcg aagcgataat cgacggatac
      181 ccttgcgctt cgaagtattc gcaaaacaac tcgaactctt tcagcgtcgg catccctttc
      241 aaatcgacga tcgcgattcg tggcgcgcga tccgcctttc gtccgagaaa ctcttcatga
      301 caattcaaga gcagttgcag catcagcggg cgcccctcaa atcgccgcag attgtagctt
      361 tccgcgaacc gtttcatgac cgggagttca gcaaaaatgt cgtaggccgc atcagcatag
      421 gcgatgcctg ccgggctttc gccgttcaac tcgacaaagc tgtaagcgtt atctgtcaga
      481 aacgaatcga gacgcgctgt cggcgagacc gccgcgtagc caggatcgat cttcaccagc
      541 tcgcgttcga tctcagtcag accgagttca tcaagcaacg actcattcgc aaccgctgca
      601 tccttcactt tttcgatcgc gctccagacg gtctcgcaga cgcggcagac gcgcgcgaaa
      661 tcttcttcag caacaaaatg cggacgcaga tacggcgaca agcgccgccc tccgaaaata
      721 agtttcgcgt gctcgaggcc ttcatcaagc agcgccagcg aggtccgcgc cagctcgtca
      781 tcggccagca gatcgtggta aagagcgaca gcttcgctca gcatagttca gcaggagcgc
      841 acgcatctac cggggtcccc ggcgcggcag ccgcgctggg gtggccgggc gtgcggttcg
      901 cgggcatccc tgccccgcag tcaaagaatg aattgggaaa acgaggacag attaacacat
      961 ctcagacgaa gataacctcg gccactcctg atgtagtgca acatctcaca gataagacaa
     1021 ccaccaatca cgccgccgcg ccttcacgcc ggcgaaccat ttgcatagcg gatacagcag
     1081 tagtacgccg gcgatccacg ccgcataaac cacagggaga ttgaaaccat ttcccttcgg
     1141 cggattctcg aaaattccaa ttggactctt gaacagccac gctaccggct tgccgaaggc
     1201 ccaatgcagc agtacagaga tgaggtgcgc ggtcggccat tgaagcaaat aaaagaacag
     1261 cggcactcga ccgaaagtta tgaagaatcg gctgatcgac ccacgcttca aaacttcaaa
     1321 gcaggccagc gcggcgatcg ctggtcccag tgtcatcaac aaaaacaaaa gcgacggcgg
     1381 gtatttcgtc gtgttcagaa aagagagcaa agtgaacacg gcattcttct gccgcgccca
     1441 atgaatgggc tcgccatact cgtcgatggc ccgaagcatc acaaatagaa ttgtcgcgac
     1501 ccctccaatt atcaacagcc aacgtcttcg cagttgaagg tctttcttaa agagcgcccc
     1561 aaaggcatag cccgcggcca tcacaccaat ccacggaatg agtgggtaca agacgaagac
     1621 gatcggactc ggaaatctgg caataggaaa gaatcccggc tggtgaagca ccatccaaag
     1681 cttcgcgccg acactcggaa cgggactgtt gggtccttgc catggctgga ccgggaatcg
     1741 atcaagcaaa ttgtgaaatg caatcatcac caccccgaac gcgccaacca ctttcaaggg
     1801 cagatgaatc aacgccgcca ggatgatcat cgaagcgccg attacgaaga tcacttggac
     1861 gagggcaagg aatctgggat cgaagctgaa aaaagcgccg agcctgaccg cggtaaattc
     1921 caacacgatt agccacaatc cgcgcgttat cagaaaacga gagagttcgc ttttcttctt
     1981 gccgcgtgcg aattgtagat agatgccagt accggcgaga aacacaaaca caggcgcgca
     2041 gaaatgtgta acccagcgcg tgaggaagag cgccgtgttg gtttgagtca aatcaagagg
     2101 atcgaaacgc agcgcgccgt aatgaacaaa gtcgcgcgtg tggtcgagca tcatgacgac
     2161 catcacgatg ccgcgcagca gatcgattga atcaatgcgg gaacgggtgg gcttaggcga
     2221 cgacgcgtct tgcgcttcgg ggctagctcc gtttgtagcc gttgagtctg tcattcagca
     2281 aggaacagag aagaacggtc tgacgacgcg ggcgagtcta ctatcgtttc cattcgacgc
     2341 caagatcaaa cgagccacga atccgttgct caaccgagat cgatctggcg tacggagatt
     2401 atctgttcaa cttcgcccaa tgccgccagc gtttcgacat ccactggcgc gtcgatttcg
     2461 actaccgcca tggcctcgcg gccccgctcg cgtcgcccaa gatggaagtg actaatgttg
     2521 atgccgcgat ctccgagcac ggtgccaatg cggccaatga ctcccggcac atcgcggttt
     2581 cgcatcacga gcatgtggcc gcgcggaatc gcctcaacat gaaagtcgtt gatttctgtg
     2641 atgcggcctt cgcgcgcgcc gccgggactg ccaaacaccg tgcccgacgc gctctgctcg
     2701 ccaccttcgc aaacgacccg agtgctaatc gcgggcgcgg attcaccact gctccggaca
     2761 taagaagttg tgaccgtgat gccgcgttct tcaccaatca agaacgcgtt gacgatgttg
     2821 acacgcgcgc tgacgtcgcg cagcaagccg gcgagaaacg accgcgcgat aggcgtcgcg
     2881 tcgagttcga cgatctcgcc cgccaactcc agtttcactt cacgcacggc gctgtcaacg
     2941 agctgcgctt gcaagcgacc caaactttcc gccaacgcga tgtagggacg tagcgtgccc
     3001 aggtctttcg cgccaagcgc aggcacattc acggcgccac gcaaggcgcc agtcagcaga
     3061 tagtcgcgca tctgctcggc gacagtgaag gcgactcctt cctgtgcttc ggtcgtcgaa
     3121 gcgccgagat gcggcgtcgc aatcacttca tccaaagaaa gtaacggatg atcggctggc
     3181 ggcggctcct gcgcgaaaac atccagtgcg gctccggcga cgatgccgga tttgatcgct
     3241 tcgcagagcg cttcctcatc gaccaatccg ccgcgcgcgc aattgatgac gcgaacgccg
     3301 cgcttcatct ttgcgaacgc ttcacgacca acaacgccgc gcgtctctgc ggttagcggc
     3361 gtgtgaaccg tgagaaaatc agcgcgtgcg aaaacctcgt cgagccgcgc caattcgatt
     3421 tctaaatcgt gcgcctgctc agcagcaata aaaggatcgt gcgcgactat cttcatcccg
     3481 aacgaacgag cacgcacggc cactgctcgt ccaattcggc caagaccaat tatgcccagt
     3541 gtcttcccct gcagctcgac cccgataaag cttttgcggg cccacttccc tgctttcaaa
     3601 ctgctgctgg cctgcggcac gttgcgcgcg agcgaaatca acaaagccaa tgtgtgttcg
     3661 gccgtcgtga tcgtgttgcc atccggcgca ttcatcacga cgatgccgcg cgccgtcgcc
     3721 gccggcacgt cgatgttgtc gacgccaact ccggcacgac cgatgacgcg cagtttcggt
     3781 gcgtggtcca tcacagcagc ggtgaccttg gtttcactgc gcaagatcaa tgcatcgcaa
     3841 tcgcgcaaag cctctcgcag agactcaggc ccgaggccgg tcttcctctc cagcgcaaag
     3901 ccggcggcgc gtaacggctc taggccgctg tcgctgacgt catcggcaac caggattttt
     3961 gtttgttgag taggcatcgt tcagccgctt cacgagagga ttgcaaagac cgccatcatg
     4021 gctgacacca tcaccgcggc ataggcaccg gcggcaagat cgtcaacgac gatccccaat
     4081 cctgattcga gggcttccaa gcggcgaatg ggataaggct tgatgatgtc gaatgcgcga
     4141 aagagtaaga atgcgacaac gatccatact cgccacggtc caatcaccca aagcggcacg
     4201 ggcaggagag caatcaattg tccggcgact tcgtctatta caactttgcc aggatctttc
     4261 ttttgaaaaa tccgctccgc gcgcgatgct gcccaaaatc cgatcagcgt taccaaggtg
     4321 atcactaata gctcgatcgc gacgaaaaga acgccaggat caaataatgc caagctgttc
     4381 gttcgggcta accgatgctg caaggcaagg gccgatgatc gcaagaccag gtagagacca
     4441 accgcgacca atgatcccca cgtccctggc gcgatcggaa tatagccgac gccgcacgtg
     4501 gcgatcgcga gggcgatata gtcactcgcg cttctacggt ttgactgtga cggaacaggg
     4561 ttcattaggt cagttcggct ctacgatccg ccccagcaga tcgtattcgt gcgcttcttc
     4621 gatcagtacg ttcacaaatt cgcccgctcg cggggtgaaa ttctcgggtg catcatttat
     4681 caaaacgcag ccatcaatgt caggcgcctg agtttccatt cttccctgcc aaagcaactc
     4741 gctctctttt gactcgcctt cgaaaaggac ccgcacagtc tcgccgacgc gagctttatt
     4801 ccgacgccgc gagatgcgtg cttgcgcttt catcagttgt gcgcggcgct gctttgcgat
     4861 tttgggttcg actttgtttg gcaggtcata agccggcgtg ccttcttcgt ctgaataagt
     4921 gaagacgccg acgcgatcga actcgatgtc ccggacgaag gtaagcaact cttcgaagtc
     4981 ttcatctgtt tcgccaggaa accccgtgat gaaggtcgtg cgcacggcaa tcccgggaac
     5041 gcgttggcgc actcgggcga tcaaacgttc aagcgacgcg cgcgagccgc cgcgtttcat
     5101 tagcttcaag actttttgcg atgcatgttg cagcggcata tcgagatact taacggcctt
     5161 tggttcttcg gccagcacgt cgagaaagcc atcgctgatg tgcgtcggat aggtgtacat
     5221 cacccgcacc cactcgattc cgtcggtgtg cgaaagctct cgcagcaaat gcgcgagggc
     5281 gtcctgcttg ccgaggtctt cgccatagcg cgatgaatcc tgagccacca gaatcaattc
     5341 cttgacacct tcctcagcga gttgctgcgc ctcagctacg attgatccga atcggcggct
     5401 gcgaaagtgc ccgcgcatct gaggaatgaa gcagaatgca cagggccgat cgcagccttc
     5461 ggcaatctta atgaatgcat agtggctcgg tgtggcgagc acgcgcggcg ttgattcatc
     5521 gtagagataa gtcgcgctct gattacccag cgggattacc ggcagcgagc gcgtgttcgt
     5581 cttaggatca caaactgtta ggatgtcgtt gatctgactc gtgccaatga aagcatcaat
     5641 ctcaggcatt tctgctttca attcatcgcg atagcgttcc accaaacagc cggccactac
     5701 taatcgtttc gctttgcctt cagttttcaa tcgcgcggct tcgaggatcg cgtcgatcga
     5761 ttctttcttg gcggcgtcga tgaagccgca cgtattcacg accacggtgt ccgcttcttc
     5821 agcgttcgcc gtaatctcgt aacctttttg cttgagctgg cccatcatca cctcgctatc
     5881 gacgaggttc ttagggcaac cgagactgat aaatccaact ttcataagat cagttgcgtt
     5941 ctctccctct ccctttggga gacatgtatg ttgaatgtca ggtcggttgt ctagaatagc
     6001 cttggtttac caagccattc gaggagaaac gacgatgaca attccggc
//
LOCUS       DASZZE010000087         2016 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_116351, whole genome shotgun sequence.
ACCESSION   DASZZE010000087 DASZZE010000000
VERSION     DASZZE010000087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2016)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2016)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2016
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116351"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..367)
                     /locus_tag="VHD88_01645"
     CDS             complement(<1..367)
                     /locus_tag="VHD88_01645"
                     /inference="COORDINATES: protein motif:HMM:NF013426.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S) ferredoxin domain-containing protein"
                     /protein_id="HVS20516.1"
                     /translation="MAEPKFIADVEELRARAPITTAPIRHHVFVCTGKSCSANDSAEV
                     KAAFERELMARGLLMGRKEKGKNPKGSVVLTECASVGFCAIGAAVMIYPDGVWYAQVR
                     ATDVPEIIESHLLNDRIVAR"
     gene            757..>2016
                     /locus_tag="VHD88_01650"
     CDS             757..>2016
                     /locus_tag="VHD88_01650"
                     /inference="COORDINATES: protein motif:HMM:NF024758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HVS20517.1"
                     /translation="MAEQNSNGLVIHVSSLNDRSTEVVMRDVIRIGASEDCDVKIRLS
                     QVTATNGPVIELNRVDGRYRITSFDSSLEVKFNGRSIKPNKGIDDGDEIWIGPSGPSI
                     HFFPIEATAALVPGRRDGAHVAPFIEQAAMEASATARRDDAKIFLREFTRELVREINP
                     STKIIVFAILILAVGGALYIGFAQFNEARRGRRIIADQQAQLVAQREQLQRANDQLGN
                     LVKSNQQMLKTLSLGELLRADYGGGVCLISGSYMFVESGTGRPLRYPETQTNESGGPI
                     QNGTESPVLTPEGHGAIAEYEFVGTGFHVGNGFVLTNRHVMQPWRADDRAQSLNSSVK
                     GQPRLRKLVAFFPGNTQPIVLKFKQAAQREDLAVCTIDAKDLPAKLPVLPLEKDSDSV
                     AVGRIVVTMGYPSGPDRLLALLDENEAR"
BASE COUNT          440 a          587 c          569 g          420 t
ORIGIN      
        1 atcgggcgac gatgcgatcg ttcaagaggt gtgattcgat gatttcaggc acatcagtcg
       61 cgcgcacctg tgcataccaa acgccatccg gatagatcat caccgccgcg ccgatcgcgc
      121 agaaaccgac ggacgcacac tcagtcagga cgacgctgcc tttcgggttc ttgcccttct
      181 ccttccgacc catcaaaagg ccgcgcgcca ttaactcgcg ctcaaacgcg gctttcactt
      241 cggcgctgtc gttcgcagag caggactttc ccgtgcacac gaacacgtga tgacggatcg
      301 gcgcggtggt tatcggcgcg cgcgcgcgta actcttcaac gtctgcaatg aactttggtt
      361 cagccactga tctaatccta gcacgaagag gtatcaggca tcagcaacag gttcctcacg
      421 ctaacggctc cgccatctga tgtgcggaaa gcctgcgact tccggcaagt gttattcaac
      481 tctctgaggc tccgcgtcga atatggaggc atagcctccc cccactagaa aagagcgctc
      541 cgcggaaagg cccagccttt ccgcacatcg ggcggcaaag ccgcgggctc ggtccatttg
      601 tcgtcgcacc gcgcttcgca gagtctttgc tggttgttca tttcattgta agattgcttg
      661 cgaacgggcg accgcttgac cgaccgcatc aacttctcgg cggtctttga tgcgggcgcc
      721 tgatttgata ttcaaagcac ggaagcacgt cggctaatgg cagagcagaa ctcaaacggg
      781 ctggtaattc acgtttcgtc gctcaacgat cgctcgactg aagtcgtcat gcgtgacgtg
      841 attcggatcg gcgctagcga agactgcgac gtcaagattc gtctttcgca agtgaccgcc
      901 actaacggcc cggtaattga acttaatcgc gtcgatggcc gttaccgaat aacgagtttc
      961 gattcgagcc tggaagtaaa attcaacggc cgctcgatca aacctaacaa agggatcgac
     1021 gacggagacg aaatctggat cgggccgtct gggccgtcga tccatttctt tccaattgag
     1081 gcgactgcgg cgctcgtgcc cgggcggcgc gatggagcgc acgttgcgcc attcatcgag
     1141 caggcggcga tggaagcttc ggcgacggcg cgccgcgacg acgcgaagat ttttctgcgc
     1201 gagttcacgc gcgaactggt ccgcgaaatc aatcccagca cgaagattat cgtcttcgcg
     1261 atcttgattc tcgccgtggg aggcgcactt tatatcggct ttgcgcagtt caatgaagcc
     1321 aggcgcggcc gccgcatcat tgctgaccaa caggcgcagc tcgttgcaca gcgagaacaa
     1381 cttcaacgcg ccaacgatca actgggcaac ctcgtaaaat caaatcaaca aatgctcaag
     1441 acgctctcgt tgggcgagct gctgcgcgcc gactatgggg gcggcgtttg tttgatttcc
     1501 gggtcgtaca tgtttgttga atcagggacc ggccgccctt tgcgctatcc cgagacacaa
     1561 acaaacgagt ccggcggccc aattcaaaac ggaactgaat cgcccgtgct gactcccgaa
     1621 gggcacggcg caatcgccga gtatgaattc gtgggcacgg gctttcacgt cggcaatggt
     1681 ttcgtgctga ccaaccgtca tgtgatgcag ccctggcggg cggacgaccg cgcgcagagc
     1741 ttgaacagca gcgtgaaagg tcaaccacgg ctgagaaagt tggtggcttt ctttcccggc
     1801 aacactcagc ccatcgttct gaaattcaag caagcagcgc aacgcgaaga cctggccgtt
     1861 tgcacgatcg acgcgaagga cctgccggca aagcttcctg ttctgccact cgaaaaggat
     1921 tctgattcag tcgcggtcgg gaggatcgta gtgacgatgg gttatccttc aggccctgat
     1981 cgattgctgg ctttgcttga cgaaaacgaa gcgcgc
//
LOCUS       DASZZE010000088         6887 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_36069, whole genome shotgun sequence.
ACCESSION   DASZZE010000088 DASZZE010000000
VERSION     DASZZE010000088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6887)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6887)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6887
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36069"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..910
                     /locus_tag="VHD88_01655"
     CDS             <1..910
                     /locus_tag="VHD88_01655"
                     /inference="COORDINATES: protein motif:HMM:NF013086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HVS20518.1"
                     /translation="FMERYDPERVDLSTRDVVARAIYTEAKEGRGTEHGGAYLDISHK
                     PAEYVKKKLPSMYHQFRELADVDITKEPMEVGPTCHYMMGGIRVDAETAQSNVPGLFA
                     AGEAAAGLHGANRLGGNSLSDLLVFGRRAGLAAAEHSKQVATPNTDDTQVEEATREML
                     EPFERGDGDCPYDVHRDLQETMQNYVGIFRSEEDLKQGLSEIQRLKDRAAKVHVDGSR
                     LFNPGWHLARDLKSLLTVSEAVALSALERKESRGAHSRIDFPQLDEQWGRLNNIISRD
                     GEAMRLSHATITEMPSDLRAISEETK"
     gene            924..1664
                     /locus_tag="VHD88_01660"
     CDS             924..1664
                     /locus_tag="VHD88_01660"
                     /inference="COORDINATES: protein motif:HMM:NF009052.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HVS20519.1"
                     /translation="MPDATFKVFRGDRNNGELVEYRVPIAPGMVVLDALHYIQAHHAP
                     DLAVRWNCKAGKCGSCSAEVNGRPRLTCKTRLDALPMDQPITVQPMKAFPVLKDLVTD
                     VSWNYRVNKKIPPFTPKPNVEWKMDQREVDRVQEFRKCIECFLCQDVCHVLRDHDKQE
                     QFGGPRFFVRVAGLEMHPLDSLNRTELLKDELGIGLCNITKCCTEVCPEDIHITDNAI
                     IPLKERVVDDFYDPVRWFLRKLSGKRRT"
     gene            1686..2072
                     /locus_tag="VHD88_01665"
     CDS             1686..2072
                     /locus_tag="VHD88_01665"
                     /inference="COORDINATES: protein motif:HMM:NF025341.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="retroviral-like aspartic protease family
                     protein"
                     /protein_id="HVS20520.1"
                     /translation="MAVDNLSGMGLTHVTVALKGFGAPNGVYEADFLVDTSATDSLAP
                     ESELRKAGIQPVGRTAYELASGRVEEDSFGLAEISFMGEITAGRVIFGPDDAEPILGV
                     TALESVGITIDPTNRPLRRLPAIPLK"
     gene            2101..2409
                     /locus_tag="VHD88_01670"
     CDS             2101..2409
                     /locus_tag="VHD88_01670"
                     /inference="COORDINATES: protein motif:HMM:NF025178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme iron oxygenase ferredoxin subunit"
                     /protein_id="HVS20521.1"
                     /translation="MPEFVKVAQTDDIPAGTAKMVEVNGKEIALFNVGGSFHAIDNTC
                     THVGGPLCEGELSGVEVTCPWHGGVFDVTTGEVLGPPPGRAVNRYNVRVEGSDIEVEV
                     "
     gene            2557..3069
                     /locus_tag="VHD88_01675"
     CDS             2557..3069
                     /locus_tag="VHD88_01675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20522.1"
                     /translation="MVELELKPISKDGIPEAISKAELYRYLNEPGEAESICRDILAAD
                     SENQTALRLLGLSITDQFSGSPSDRYTEAESVFQNLRDEYECSYYAGLLHERLAKAQL
                     EAGRSPHTVAPLFEEALEYFEKAEAIRPHGNDDAILRWNRCVRILQSRLGSDWQKLIE
                     TIDAGDSPPI"
     gene            3183..3794
                     /locus_tag="VHD88_01680"
     CDS             3183..3794
                     /locus_tag="VHD88_01680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20523.1"
                     /translation="MTVRLAQTPPEQPPALHDRAMDNLRFIRETMERASAFTAVPGWG
                     QVAIGVTALAATYLAAHQATAKGWLGTWLVEAIISLLIAGWSLDRKARATETPLLSGP
                     GRKVAFSLSPPMIVGALLTIVLFRAGLMSAIPGMWLLLYGTGVVTGGMYSVGIVPVMG
                     LCFMVLGGAGLFARTAWGNWLMAAGFGGLHIVFGVIIARKHGG"
     gene            3787..4176
                     /locus_tag="VHD88_01685"
     CDS             3787..4176
                     /locus_tag="VHD88_01685"
                     /inference="COORDINATES: protein motif:HMM:NF013777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HVS20524.1"
                     /translation="MAKQQALRRELKKGQTEKQRLRGVHGGAPQSMHEIDRLIHERLR
                     LGIISALAVNESLTFNELKHTVKTTDGNLSVHARKLEDAGYVKCSKSFEGRTPKTEYR
                     LTTAGRRALERYLDHMEALIGRMRKAS"
     gene            4398..5651
                     /locus_tag="VHD88_01690"
     CDS             4398..5651
                     /locus_tag="VHD88_01690"
                     /inference="COORDINATES: protein motif:HMM:NF017893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane CreD family protein"
                     /protein_id="HVS20525.1"
                     /translation="MIKRIAAITFIFLCAAFAWAVLGATIFQRTYSSDSSSENRVAST
                     WGAPQNQSQPTASFDELVPKKEETTENGKKIVTVTQEKVTTALPLEGSHINVDLNLEH
                     RQKGLLWYSTYKVAFDGAYSFRNSSNKDQNVSFTLNFPTAHAIYDDLVFTVDDAPVAL
                     TDEKNSASGTARVAAGKSATLRVGYKSQGLNDWRYSFGSPDVAQVRDFSLKMNTNFKD
                     IDFPDNTLSPNEKHETGSGWDLNWNFKNLVSGYQIAMTMPERLQPGPLAGRISFFAPV
                     SLFFFFFLMFIITTLRGIELHPMNYFFLAAAFFSFHLLLAYLVDHISIHLAFGICSAV
                     SVFLVVSYLRLVVGMRFASREAALGQFVYLVAFSYAFFLKGFTGLAITIGSIITLFVV
                     MQATGRIRWKDKFATRDAEPSTNPA"
     gene            complement(5708..6463)
                     /gene="larB"
                     /locus_tag="VHD88_01695"
     CDS             complement(5708..6463)
                     /gene="larB"
                     /locus_tag="VHD88_01695"
                     /inference="COORDINATES: protein motif:HMM:NF033503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nickel pincer cofactor biosynthesis protein
                     LarB"
                     /protein_id="HVS20526.1"
                     /translation="MEERDIRRLLERLQAGRVSVEDAIERLRHLPFEDLGFAKIDHHR
                     ALRQGFAEVIFGRGKTPQQVVAIVRGMLRPKDSAHNILITRADRRIYRAVRRVSAKAR
                     FYPLAGAIAIRRNRIISGKGTILTLSAGTSDIAVAEEAALTAEIMGNRVETVYDVGVA
                     GLHRLMEHREKITRARVIICVAGMEGALPSVVAGLVAVPVIAVPTSTGYGASFGGLTA
                     LLAMLNSCASNVSVVNIDNGFGAGRVASAINRL"
     gene            complement(6470..>6887)
                     /locus_tag="VHD88_01700"
     CDS             complement(6470..>6887)
                     /locus_tag="VHD88_01700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20527.1"
                     /translation="GHRAAREHQVLAPLLEAGLSKAEIRELSRQEGLPTWDRPASACL
                     SSRLPYGTPVTIQNLSQVERGEAILRALDFRQFRVRHHGEMARIEIASEELPRALDAK
                     MAQTLAERFKLLGFRYVTLDLEGYRQGSLNAALTKK"
BASE COUNT         1477 a         1922 c         2004 g         1484 t
ORIGIN      
        1 ctttatggag cgctacgatc cggagagggt ggatctgtcc acgcgcgatg tggtggcgcg
       61 ggcgatctac accgaagcga aggaagggcg cgggacggaa catggcggcg cgtatctcga
      121 catttcgcac aagccggctg aatatgtgaa gaagaaactg ccgagcatgt atcatcagtt
      181 tcgcgaactc gccgacgtgg atatcacgaa agagccgatg gaagttggcc cgacgtgtca
      241 ttacatgatg ggcggcattc gcgtggacgc cgagacagca caatcgaacg tgccgggtct
      301 gtttgccgcg ggcgaggcgg ctgccggatt gcacggcgcg aatcggctgg gcggaaattc
      361 gctttctgat cttctcgtct ttggccggcg cgcaggtctg gctgcggcgg aacactcgaa
      421 gcaagtggcg acgccgaaca ctgacgacac tcaggttgag gaagctacgc gggaaatgct
      481 cgagccgttt gagcgcgggg acggcgactg cccgtacgac gtgcatcgcg acttgcagga
      541 aacgatgcag aactatgtgg gcatctttcg cagcgaagag gatctcaagc agggtctttc
      601 tgagatccaa aggctgaaag accgcgcggc caaagtgcac gttgacggct cgcgtctgtt
      661 caatcccggt tggcatctcg cccgcgatct gaaatctctg ctaacagttt cagaagcggt
      721 ggcgttgagc gccctggaac gaaaagagag tcgcggcgcg cacagccgca tcgactttcc
      781 gcaacttgat gagcagtggg gccgactgaa taacatcatc tcgcgggatg gggaagcgat
      841 gcgtttgagt cacgcaacga tcacggaaat gccttccgat cttcgggcga tctcggaaga
      901 gacgaaataa agcgttttcc tttatgcctg acgcaacatt caaagtcttt cgcggcgatc
      961 gcaacaacgg tgagttggtt gaataccgag tgccgatcgc accaggcatg gtcgtgctcg
     1021 atgcgctgca ttacattcag gcgcaccacg cgcccgatct agccgtacgc tggaattgca
     1081 aagcagggaa gtgcggctcg tgctcagcgg aagtaaacgg ccgtccgcgg ctcacatgca
     1141 agacgcgtct ggacgctttg ccaatggatc aaccgatcac tgtccagcca atgaaggctt
     1201 tcccggtgct gaaggatctc gtcaccgacg tttcctggaa ttaccgcgtc aacaaaaaga
     1261 ttccgccgtt cacacccaag ccaaacgtgg aatggaagat ggatcagcgc gaggtcgatc
     1321 gcgtgcaaga gtttcgcaag tgcattgagt gctttctctg ccaggacgtt tgccacgtgc
     1381 tgcgcgatca cgataagcag gaacaattcg ggggcccacg cttctttgtg cgcgtcgcag
     1441 gcttggaaat gcatccgctt gacagcttga atcgaacgga gttgctgaaa gacgaactcg
     1501 gcattggctt gtgcaacatc accaagtgct gcaccgaagt ctgccccgaa gacattcaca
     1561 tcaccgacaa cgctatcatt ccactgaagg agcgcgtcgt tgatgacttc tacgatcccg
     1621 tgcgctggtt cttgcgaaag ctgtcaggga aaaggcgcac ttgatcgcgg cgcttgtcgt
     1681 ggggcttggc tgttgataat ctcagtggca tgggacttac tcacgttacg gttgctttaa
     1741 agggctttgg agctccgaac ggagtttacg aagctgattt tctcgttgat acgagcgcga
     1801 cggacagtct cgctccagaa tcggagttga gaaaagctgg catccagcca gttggaagaa
     1861 ccgcgtacga gctggcaagc gggagggttg aggaagattc gttcggacta gctgaaatat
     1921 ctttcatggg ggagattacg gccgggcggg tcatctttgg tccagatgat gcagaaccga
     1981 ttctgggagt cacggcgctg gaatcagtgg gaatcacaat cgacccgacc aaccgaccat
     2041 tgaggcgctt gccggcgatt ccactcaaat agaacattct tcaagcaaag agagaaacca
     2101 atgccagagt ttgtaaaagt tgcccaaacc gatgacattc ctgccggcac ggccaagatg
     2161 gtggaggtca acggcaaaga gatcgcgctt ttcaacgtgg gcggttcgtt tcatgccatc
     2221 gataacactt gcacgcacgt gggaggtccg ctctgcgaag gagaactgag tggtgtggag
     2281 gtgacctgcc cctggcacgg aggcgttttt gacgtgacca ctggcgaagt gcttggccca
     2341 ccgcccggcc gcgctgtgaa tcgctataac gttcgcgtag agggttcgga tatcgaagtc
     2401 gaagtctaat ggccacggag gccggagaga cacagagaag acttgagaag gcttgcaggt
     2461 tgcgccggct tcgttgggcc gcgaagtgca atggttttat caaagcactt ctaagttctc
     2521 cgtgtctccg tgcctctgtg gcaagttcat gcagttatgg tggaattaga gctcaaaccg
     2581 atctcgaaag acggcattcc tgaagctatc tcgaaagccg agctgtatcg atatctgaac
     2641 gagccgggcg aagctgaatc gatctgccgc gacattctgg ccgcggattc cgagaatcaa
     2701 acggcgttgc gtttgctcgg gctatcaatc accgatcaat tcagcggcag tccttcagat
     2761 cgttacaccg aagcggaaag cgttttccaa aatctgcgag acgagtacga gtgctcttac
     2821 tacgccggtt tgcttcacga acgcctggcg aaggcgcagc ttgaagcggg ccgctcgccg
     2881 cacactgtcg cgccgctgtt cgaagaggct ttggaatatt tcgagaaggc cgaagcgatt
     2941 cgtccgcatg gtaacgacga cgccatcctg cgctggaatc gttgcgtgcg cattctgcag
     3001 agccggcttg gttccgactg gcaaaagctg atcgagacaa tcgacgccgg cgatagcccg
     3061 ccaatctaga ttctcattca cttggcaacg caaagtgttc agcgttttgc gacctcgcac
     3121 gcttatcttc tttgtcatgc aaagtacttg acatggcaga actgatggct ataattggtt
     3181 gcgtgacagt tcgactagcc cagacgccgc ccgaacaacc tcccgcgctt cacgatcgcg
     3241 cgatggacaa cctgcgcttt atccgggaaa cgatggagcg cgcgtcggcg tttacggccg
     3301 tgccgggttg gggtcaggtg gcgattggcg tgacggctct ggcggcaacg tatttggccg
     3361 cgcatcaagc caccgccaaa ggatggctcg ggacctggct agttgaagcg atcatttcgc
     3421 tcttgattgc gggctggtct ctggatcgaa aagcgcgcgc aactgagacg ccgctgcttt
     3481 ccgggccggg tcgcaaggtc gccttcagcc tttcgccccc gatgatcgtc ggtgcgctgc
     3541 tgacgattgt tcttttccga gcgggactga tgagcgcgat tcccggaatg tggctgctgc
     3601 tttacggcac tggcgtcgtg accggaggca tgtactcggt tggcatcgtg cccgtcatgg
     3661 gcctttgctt catggtgttg ggcggagctg ggcttttcgc ccggactgcg tgggggaact
     3721 ggctgatggc ggctggcttt ggcggattgc acatagtctt tggcgtaatc atcgcgagga
     3781 aacacggtgg ctaaacaaca agcgctaagg cgtgaactaa aaaagggaca aaccgagaag
     3841 caacggttgc gcggcgtgca tggcggcgcg ccccagagca tgcacgaaat cgatcgcttg
     3901 attcacgaaa ggcttcggct gggaatcatc agcgcgctgg ccgtcaacga atcgctcacg
     3961 ttcaatgaac tcaagcacac agtcaagacg actgacggca atctgagcgt gcatgcgcgc
     4021 aaactcgaag acgcgggtta cgtcaagtgt tccaagtcgt tcgaaggccg caccccgaaa
     4081 actgaatatc gtttgacgac ggccggcagg cgcgcgctgg aacgttatct cgatcacatg
     4141 gaggctttga tcggccggat gcgcaaggct agttaggcgt gtggccgcaa attaacagtc
     4201 cgctacacgg caagactgtg tttcgtctcg aactgccgca gcagaaggcc cgttctgctc
     4261 acgagaaacc agtgtggcta gccacattgc cgcgaactaa gccgggttcg acaattgccg
     4321 caacgcgaca tgaataaatg ttcgagtcat tcaccgagcg tcaaccagtt agtcattcgt
     4381 ttccgaggag taatgtcatg atcaaacgca tcgccgcaat cactttcatt ttcttgtgcg
     4441 ccgctttcgc ctgggctgtt ctcggcgcga cgatcttcca acgcacgtat tcatcggatt
     4501 cttcttcgga aaaccgggta gcttcgacgt ggggtgcgcc gcagaatcaa tcgcagccga
     4561 ccgcttcctt cgatgagctt gtgccgaaga aggaagaaac gaccgaaaac ggaaaaaaga
     4621 ttgttaccgt tacgcaggag aaagtaacca ccgcactgcc gttggaaggt agtcacatta
     4681 acgtcgatct taatcttgaa catcggcaga agggcttgct ctggtatagc acttacaaag
     4741 ttgctttcga tggcgcctat tcatttcgca actccagcaa caaagatcag aacgtcagct
     4801 tcacgcttaa ctttcccacc gcgcacgcaa tttatgacga tctcgtgttt accgttgacg
     4861 atgcgccagt cgcgttaacg gacgagaaaa acagcgcgag cggcaccgca cgcgtggccg
     4921 cgggaaaaag cgcgacgttg agagtcggct acaaatcgca gggattgaac gactggcggt
     4981 acagctttgg cagtcccgac gtggcgcagg tgcgcgactt ttctttgaag atgaatacga
     5041 acttcaaaga catcgatttt cccgacaaca cgctatcgcc taatgagaag catgaaaccg
     5101 gcagcggctg ggatttgaac tggaatttca aaaacctcgt ttccggctat caaattgcga
     5161 tgaccatgcc tgagagacta cagccgggtc cgctggcggg ccgtatcagt ttctttgctc
     5221 ccgtctcgct cttcttcttt ttctttctga tgttcatcat caccacgctg cgcggcatcg
     5281 agctgcatcc gatgaattac ttcttcctgg ccgcggcgtt cttttctttt catttgctgc
     5341 tcgcttatct ggtcgatcac atttcaatcc atctggcgtt cggcatctgc tcggccgtgt
     5401 ctgtctttct cgtcgtctcg tatctgcgac tggtggtcgg gatgcgcttc gcgagtcgcg
     5461 aagccgcgct cgggcagttc gtgtatctcg tcgcgttttc gtatgcattt ttcctgaaag
     5521 gcttcaccgg cttggcgatc acgatcggct cgatcattac gctgttcgtg gtgatgcagg
     5581 cgacgggaag aattcgctgg aaggataagt tcgccacaag agatgcggaa ccctcaacca
     5641 atccggcata agcgcatgcg gctttgatct ccgccgccct actctgatcc gccggattgg
     5701 cagacaatca caggcggttg atcgcgctgg ccacgcggcc cgcgccaaag ccgttatcga
     5761 tattcaccac gctgacgtta gacgcacaac tgttcagcat cgcgagcagc gccgtcagcc
     5821 ctccgaagct ggcaccgtag ccggtgctgg tcggcacggc aatcaccggg accgcaacca
     5881 accccgccac cacgctgggc agcgcgcctt ccattcccgc tacacaaatg atcacgcgcg
     5941 ctctggttat tttctcgcgg tgttccatca atcggtgcaa tccggcgacg ccaacgtcgt
     6001 acacggtctc tacgcgatta cccattatct ccgcagtcag cgcggcttct tcggcgacgg
     6061 caatgtcgct cgtgccagcg gaaagcgtca ggatcgtgcc cttgccgctg atgatccggt
     6121 tgcgcctgat cgcaatcgcg ccggccagcg gatagaacct ggccttcgcg ctcacgcgac
     6181 ggacagcgcg atagatgcgc cgatccgcac gcgtgatcag gatgttatgc gcagaatcct
     6241 ttggccgcag catcccgcgg acaatcgcga ccacctgctg cggcgttttt ccgcgcccga
     6301 agatcacctc ggcaaagccc tggcgcagtg cgcggtgatg atcaattttg gcgaagccca
     6361 gatcttcgaa tggtaaatga cgcaggcgct cgatcgcgtc ctccaccgaa actcggcccg
     6421 cttgcagccg ctcgagcagc cgccggatgt cccgctcttc cattgtggtt tattttttcg
     6481 tgagtgcagc gttcagcgac ccctgccgat agccttccag atccaaagtg acgtacctga
     6541 atccaagcag cttgaaccgc tccgccagtg tttgcgccat cttcgcgtcg agcgcacgcg
     6601 gcaattcttc cgacgcgatt tcaatgcgcg ccatctcgcc atgatgccgc acgcggaatt
     6661 gccggaagtc cagcgcgcgc agaattgctt cgccgcgttc gacctggctt aggttctgta
     6721 tcgtcaccgg cgtcccgtaa ggcaggcgcg aggagagaca cgccgaggcg ggacgatccc
     6781 atgtcggcaa cccctcctgc cgcgaaagct cgcggatttc cgccttgctg agtccggctt
     6841 cgagcagcgg cgccagcacc tgatgttccc tggcggcgcg atgaccg
//
LOCUS       DASZZE010000089         2456 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_84779, whole genome shotgun sequence.
ACCESSION   DASZZE010000089 DASZZE010000000
VERSION     DASZZE010000089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2456)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2456)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2456
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84779"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..925)
                     /gene="aroF"
                     /locus_tag="VHD88_01705"
     CDS             complement(<1..925)
                     /gene="aroF"
                     /locus_tag="VHD88_01705"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: protein motif:HMM:NF006421.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HVS20528.1"
                     /translation="MLIVMKADATDAQIAHVCDVITELGFKPHAMPGATRTAIGITGN
                     QGAVAPTRFENLPGVADAIRVSKPYKLITLDLRPDKTVVRIGDATIGGDELAIIAGPC
                     AIESHAQAFAVAEAVRRSGARFFRGGAFKPRTSPYAFQGLGEEGLKILAEVREAYGLK
                     IVTEAVDENSVDLVERYGDMIQIGARNMQNFSLLRRAGKSHLPVLLKRGLSATLDEWL
                     LAAEYIMSEGNYQVVLCERGVRTFAQHTRNTLDLASIPAVRRISHLPVIVDPSHGTGK
                     NYMVIPLACAGVAVGADGLIVEVHDQPEKALS"
     gene            complement(947..1213)
                     /locus_tag="VHD88_01710"
     CDS             complement(947..1213)
                     /locus_tag="VHD88_01710"
                     /inference="COORDINATES: protein motif:HMM:NF016876.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008657 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) inhibitor activity
                     [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_process: GO:0030541 - plasmid partitioning [Evidence
                     IEA];
                     GO_process: GO:0051290 - protein heterotetramerization
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HVS20529.1"
                     /translation="MASYKVVPKPSIEKDLRPLSKSTIARVVKQMDALADNPFPRQSV
                     KLEGGEGLYRIRVGDYRIVYGVDLAAKLITIHHVRHRREVYQRL"
     gene            complement(1200..1388)
                     /locus_tag="VHD88_01715"
     CDS             complement(1200..1388)
                     /locus_tag="VHD88_01715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20530.1"
                     /translation="MAAREQYVVDSEGRKTGVLLSLEQYERLLEDLHDLAVVAERRDE
                     EPISLEELKRRLKKDGLI"
     gene            complement(1446..>2456)
                     /locus_tag="VHD88_01720"
     CDS             complement(1446..>2456)
                     /locus_tag="VHD88_01720"
                     /inference="COORDINATES: protein motif:HMM:NF017555.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004814 - arginine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006420 - arginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DALR anticodon-binding domain-containing
                     protein"
                     /protein_id="HVS20531.1"
                     /translation="DIAYQLWKLGQLGLDFNYEPFRAYPDGHATWVTTTEPNADAQPK
                     APRPNFGGGAIVYNVIDSRQSYPQEIVRKGVAAVVPEMGEEASVHLSYEMVALSPAAC
                     EELGIELSDEDRKRPYIEMSGRKGLGVKADDLISRLEADALAEVKTRHPDLSDQEMGE
                     TSHAIAVGALRYFLLKFTRNTVIAFDFKEALSFEGETGPYCQYAAVRANSIFRKLDEQ
                     SRAGATEHIRDALARASNKEGVSTVLEGEAGDEIWSLLMLAARRGESNAQAAASAEPA
                     FLAKYTFNLARAFNLFYHRHRIIAEEDATKQAVLIAVANYTRQQLTAALSTLGISVPE
                     RM"
BASE COUNT          518 a          736 c          642 g          560 t
ORIGIN      
        1 cagacaaagc cttctcgggc tggtcgtgaa cttctacgat cagtccgtcg gcgccgacgg
       61 ctacgcccgc gcatgcgagt gggataacca tgtagttctt gccggtgcca tgcgacggat
      121 cgacgatcac cggcagatgc gagatgcgac gaactgcggg aatcgacgcc aggtcaagcg
      181 tgttgcgcgt gtgctgagcg aacgtacgca cgccgcgctc gcacaagacg acctgatagt
      241 tgccttcgga catgatgtat tccgctgcga gcagccattc gtccagggtc gccgacaacc
      301 cgcgcttgag taacaccggc aagtgcgatt taccggcccg ccgtaacaat gaaaagttct
      361 gcatgttacg cgcgccgatt tgaatcatgt cgccgtaacg ttcgaccaaa tccacgctgt
      421 tttcatccac cgcctctgtg acaatcttca aaccgtacgc ttcgcgaacc tccgccagaa
      481 tcttcagtcc ttcttcgccc agtccttgaa atgcatacgg ggaagtgcgc ggcttgaacg
      541 cgccgccgcg aaagaagcgc gcgccgctgc gccgcacagc ttcggcaaca gcgaaagcct
      601 gagcatgact ttcaattgcg cagggcccgg cgatgatggc caattcgtcg ccgccaattg
      661 tggcgtcgcc gatgcgcacg acggtcttgt ctgggcgcag gtcaagcgtg atcagtttgt
      721 aaggcttgct gacgcgaatg gcgtcggcca cgcccggcag gttttcgaaa cgcgtcgggg
      781 cgactgcgcc ctgattacca gtgataccga ttgcggtgcg ggtcgcgccc ggcatcgcgt
      841 gcggtttgaa tcccagctcg gtaatgacgt cacagacatg cgcaatctgc gcgtcggtgg
      901 cgtcggcttt catgacgatc agcatgatgg tactagaatc tcggagtcag agtctttgat
      961 agacctcacg acgatgtctt acgtgatgaa ttgtgatcaa ctttgcagcc aagtccactc
     1021 cataaactat gcgataatcc ccaacccgaa ttcgataaag cccttcgccg ccttcgagct
     1081 tgacggactg gcgcgggaaa gggttgtcgg ctagcgcatc catctgcttc accacacgcg
     1141 cgatggtcga ttttgaaagc gggcgaagat ccttttcaat agacggcttt gggacgactt
     1201 tatatgaggc catctttttt cagacgccgc ttcaattctt caagactgat tggttcctcg
     1261 tcgcgccgtt cggcaacgac cgctaaatcg tgcagatcct caagtagcct ctcgtattgt
     1321 tctagagaga ggagcacacc tgtctttcga ccttccgaat caaccacgta ttgttcgcgc
     1381 gcagccatag tgactacttt acctaacttt tcgatttgta gaaaccctgg gcctgactta
     1441 tcaactcaca ttctctccgg cacgcttatc cccaaggtcg acaaagccgc ggttaattgc
     1501 tgccgcgtgt aattcgcaac tgcaatcagg accgcctgct tcgtcgcgtc ctcttcggcg
     1561 ataatccgat gacggtgata gaaaagattg aaggcccgcg ccaaattgaa cgtgtacttt
     1621 gccagaaagg ccggctctgc gctggcggct gcctgtgcat ttgattctcc ccgacgagca
     1681 gccaacatca gcaaggacca aatctcgtct ccggcctcgc cttcgagtac agtcgaaacg
     1741 ccttccttat tgctcgctct tgctagagca tcgcgaatat gttctgtcgc tccagcgcgg
     1801 ctctgttcat ccagctttcg aaaaatcgag ttcgctcgca ccgcggcgta ttggcaatat
     1861 gggcccgtct cgccttcgaa cgaaagggct tccttgaaat cgaaagcgat gactgtgttc
     1921 cgcgtaaact tcaaaaggaa gtaacgcaaa gccccaaccg cgatcgcgtg tgaagtctcg
     1981 cccatctctt gatctgaaag atcgggatgc cgcgttttta cttccgcaag cgcgtccgct
     2041 tcgagacgac taatcaagtc gtcggctttc actcccagac ctttgcgccc actcatttcg
     2101 atgtacgggc gttttcgatc ttcatccgaa agctcaatgc cgagttcttc acaagccgcc
     2161 ggcgacagcg ccaccatctc gtaagaaaga tggacgcttg cttcttcacc catttcgggc
     2221 accacggccg ctacgccctt gcgtacaatc tcctgcggat acgactgacg cgaatcgatc
     2281 acgttgtaaa caatcgcgcc gcccccgaaa ttcggccgcg gcgccttcgg ttgggcgtcc
     2341 gcgtttggct cagtcgttgt cacccacgtc gcgtggccgt cgggataagc gcgaaaaggc
     2401 tcgtagttga aatccaaccc aagttgtccc agcttccaaa gttgatacgc gatgtc
//
LOCUS       DASZZE010000090         1539 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_262529, whole genome shotgun sequence.
ACCESSION   DASZZE010000090 DASZZE010000000
VERSION     DASZZE010000090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1539
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_262529"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..372
                     /locus_tag="VHD88_01725"
     CDS             <1..372
                     /locus_tag="VHD88_01725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20532.1"
                     /translation="HDEATAQRLRKEYLDFTIAATEFAERISPQIFDREVTQTLLIHA
                     NDINADCLDEMLKRFATRGYRFVTLDEAMNDPAYKTRDTYVTTFGPTWLWRWMKSKGM
                     QVSFKDDPDPPQWVTDSFRQR"
     gene            complement(395..>1539)
                     /locus_tag="VHD88_01730"
     CDS             complement(395..>1539)
                     /locus_tag="VHD88_01730"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HVS20533.1"
                     /translation="TGKPVPAPRSVSFDEPANQPAAITGDQKLILTPEQAKSAGLKVE
                     TVGERPTSEAAGEMATGVVEANAYKETPVVSLVGGIVRSVKVELGQNLKRGQTVAVIF
                     SNELADAQSRYLAAVAALDEHHRHHLRTIKLVEIGAASREELEAATTKYRQAESEVAN
                     LRQRLMLLGLSPQRIDALNSTSQIGSEVAVPAPSSGKVTSRTVNPGEVIEANKELMRV
                     TDLSTVWVVGQVYEKDLATIRVGSGANITSDAYPGRVFRGRISYVDPKIDPATRTAQV
                     RIELRNPGQALKIGMYVNVAFGALGVAERTTAVIPKGAAQSIGNQQFVFVATEKPNEF
                     LLRAVRLGAESNSVYPVLDGLNVGERIVTEGSFMLRAEWLKQHPAR"
BASE COUNT          324 a          449 c          420 g          346 t
ORIGIN      
        1 catgacgagg cgacggccca gcgcctccgc aaggagtatc tggacttcac aatcgcggct
       61 acggaatttg ccgaacgtat ttcgccacaa atcttcgacc gcgaagtcac gcagacgctt
      121 ctgatccacg ccaacgacat caacgccgat tgcctggatg agatgttgaa gcgctttgcc
      181 acgcggggat atcgctttgt gactttggat gaggcgatga acgatcctgc ctataaaacg
      241 cgggacactt atgtcacaac cttcgggcca acctggcttt ggcggtggat gaaaagcaaa
      301 ggcatgcaag ttagcttcaa agacgatcct gacccgccgc agtgggtcac tgattctttc
      361 agacaaaggt gacgagatta gaggggggga ttccctaccg agccggatgc tgcttcaacc
      421 actcggcgcg tagcatgaag ctcccttcgg tgacgatccg ttcgccaaca tttaagccgt
      481 ccaacacggg atagacgctg ttgctctctg ctcccagacg gaccgcgcgc aaaaggaatt
      541 cgttcggctt ctcggtcgcg acgaaaacga attgctggtt gccgatgctt tgcgccgcgc
      601 ctttgggaat gacggccgtg gttctttcgg cgacgccaag cgcaccgaac gcgacgttca
      661 cgtacatgcc aatcttcagc gcctgcccgg gattccgtag ctcgatgcgt acttgagccg
      721 tgcgcgtcgc cggatcgatt ttaggatcga cataagagat gcgaccacga aagactcgac
      781 ccggataagc atccgaagtt atgtttgcgc cgctgcccac gcgaatcgtc gccagatctt
      841 tttcgtaaac ctgccccaca acccataccg tagaaagatc agtgacacgc atcagctctt
      901 tgttcgcttc gatcacttca ccgggattta ccgtgcgact ggtaaccttg cctgatgatg
      961 gtgcgggcac agccacttca gaaccaatct gtgaagtcga gttgagcgcg tcaatgcgtt
     1021 gtggcgacag gccaagcaac atcagccgct gacgaagatt ggcaacttcc gactctgcct
     1081 ggcggtattt ggtcgtggcc gcttccaact cttcgcgact ggccgcgcca atctcgacca
     1141 gcttgattgt gcggagatga tgacgatgat gttcgtcgag tgctgcgact gcggcgagat
     1201 agcgcgattg cgcgtcagct agttcgttac tgaaaataac ggcaacggtt tgtccgcgtt
     1261 tcaggttctg acctaattca actttgacgc tgcgcacaat cccgccgacc agcgagacta
     1321 ctggagtttc tttgtacgca ttcgcctcga cgactcccgt cgccatttcg cccgcagcct
     1381 ccgacgtggg ccgctcgccg acagtttcaa ctttcaatcc cgcgctcttc gcttgctccg
     1441 gcgtcagaat taacttctgg tcgccagtga ttgcggccgg ttgattcgcc ggttcgtcaa
     1501 acgaaaccga gcgtggcgcg gggacaggct tgccagttt
//
LOCUS       DASZZE010000091         6027 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_214578, whole genome shotgun sequence.
ACCESSION   DASZZE010000091 DASZZE010000000
VERSION     DASZZE010000091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6027)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6027)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6027
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_214578"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(234..1094)
                     /locus_tag="VHD88_01735"
     CDS             complement(234..1094)
                     /locus_tag="VHD88_01735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20534.1"
                     /translation="MQLERARGSFVVKRAASVDLPADLVRPSFDDGNFADPSELVGAL
                     SDLLTSAGLLRQRKWSVALPEATARTAILIIEGTSGSRRELEEVLDWKIERSFGASLS
                     EMRVAREQLAPNAQGQPRYLVTAVRLSVLAEYEAVFAALGWHAGLVLPRHAGEEQWLR
                     NGQRGDGLLLSTHDEGFTAVLMRDNRPLTVRSVFCETSEYDDELHRVLLFYRERAGSN
                     GTVGASSVDRLLVVGDRLDKKRVAEIAQETLGASLRPMDAADVGLTIPGGDLAFDMIA
                     APAGLARLAW"
     gene            complement(1230..1649)
                     /locus_tag="VHD88_01740"
     CDS             complement(1230..1649)
                     /locus_tag="VHD88_01740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HVS20535.1"
                     /translation="MPFPFLLSPFSRPARERGFTLLELMIVISILIILVSVALPQYQK
                     TIKHAQETVLRDDLFKMRSLIDQYAADKGKLPQSLDDLVSERYMREIPPDPITDKKDW
                     SIVTGDDPNSTEGGSGVTDVHSSSGEVSTAGTPYSEW"
     gene            complement(1702..2307)
                     /locus_tag="VHD88_01745"
     CDS             complement(1702..2307)
                     /locus_tag="VHD88_01745"
                     /inference="COORDINATES: protein motif:HMM:TIGR02532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HVS20536.1"
                     /translation="MFRNRRIRGFSLIELVITLAVLAILTLGVIPLVQVSVKRQKEQQ
                     LREALRTMREAIDQFHREANAVPNPNNPVPQSADPRTRVFISDQTIFTVDNPDRYPPD
                     LDTLVKGVDVLPFVTGILPGGRGNPNVNATAVGSAQLVPKTKIYLRAIPIDPMTGKAD
                     WGFRSCYDEPGATSSGGENVFDVYSKSDGVPLDKKGKYSDW"
     gene            complement(2331..5159)
                     /locus_tag="VHD88_01750"
     CDS             complement(2331..5159)
                     /locus_tag="VHD88_01750"
                     /inference="COORDINATES: protein motif:HMM:NF012485.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="secretin N-terminal domain-containing protein"
                     /protein_id="HVS20537.1"
                     /translation="MKLKIRWHSIVSLIIVACLLSVPVMALGKKGKDHFDRGMKLEQA
                     QKWEQAAQEFTLALAADPSNVDYQLHYRRSLFNASQTFMQQGRSLAEQRDYVGAYNAF
                     RQAFGYDPVNQLAVSEMERMLRLQEVKEGMTAGPTAGGDGVTRSEPADGGGTPSAPTT
                     AKPQEPAPSSIQGPARVINYSGDLKAFIRMMADQLNLNVMFDRQTFIQPRSIDVNLRD
                     VTAAKALDWIFLQEGLFFQKLDHRTILVAGQDRRQQYQQLVVRTFFISNADPTKATDL
                     ISRVLPASVGRPQAIVWPDKDTNSITVRDTAENVQLIGELLQSIDKDRAEVVMDVNIY
                     EVSRTDLLQFGNQLGDDSSLTTLGGVRAMGSPLGQLSRVITGTGATAVGLPASFGAAL
                     ILPASSIQALQSRNHTRLLASTQVHAFNGEESTARIGQRVPVQTASAFPFGVQTGTPN
                     NNTGFPTGGFPVINYEPTGLTLNFTPQVFPNLDVQVKMKIKSNDVFGASSVGGLLTPT
                     FTEREITGTARIQNNRTMMLASVTTDTQSNGRKGLPILGLVPVLGRLFTSPTKDNRQV
                     DIVIAVTPRVLRAPALTPRDEEMRKSGTLTAPTTGLIEAMLRETERDEQIAAARRIPK
                     EVAVQLADAPVTYVPAPIANGQASANTNKAENAVAASATTAQVTSVSQNKDTVPVKTQ
                     SAVLTEPVKQSATSNRDLAAAQTDAAMPQPKTVAVSTQTDPPAPRSMDVASALKNVVS
                     PTTNVSTTASPAKSDATVSNAVEQLALKSEKTDANAKPNKRAGGVMELRLAPEKAEMF
                     VGEKRQLTVKVNSDAPLGLALVTLRFDPRVIKINGVSAGKIFANAKIAPTITQSTDQS
                     GMLLVSVAPVAGSTVSGEGALLNIEVEAIGAGDSALVFDLSNVHLVAADGRPTMLDLG
                     SSKLTVKQPDAPAPKPAPDQPRPPATKP"
     gene            complement(5302..>6027)
                     /locus_tag="VHD88_01755"
     CDS             complement(5302..>6027)
                     /locus_tag="VHD88_01755"
                     /inference="COORDINATES: protein motif:HMM:NF012652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase, T2SS/T4P/T4SS family"
                     /protein_id="HVS20538.1"
                     /translation="IRNEEDKIITIEDPVEYQLHGITQIPVNEKKGLTFARGLRSILR
                     HDPDKIMVGEIRDEETAQIAIQSALTGHLVFTTVHANNVIDVIGRFLNMGVEPYNFVS
                     SLNCVLAQRLIRVLCPICRRAFHPSDTELIESGLRPEEHRDRIFYANVGCDACNHTGY
                     RGRTAIHELLDLSDNIREMIVERRPGSEVRRAAQAEGLTSLRESALKKVFAGASTLHE
                     INRVTFVEEVNLQWHASPSATLD"
BASE COUNT         1254 a         1746 c         1701 g         1326 t
ORIGIN      
        1 tctcttccgg ttagagaaac aaaaccgtaa acccggttgc gcccggcgcg gcttactggt
       61 tccatgtgaa gattacaaaa caaaaccgaa tcttctcgct ttcaacttga cattcacata
      121 gcagagggct ggggagaggg attgagacga caacagtttg tgtcgttgat gtcccgttgc
      181 gcttcgccac actcacaccc tctccctgac ccctctccca aagggagagg gagctaccac
      241 gccagacgag ccaggcctgc cggcgcggcg atcatatcga acgcgagatc gccgcccgga
      301 atcgtcaatc caacgtccgc ggcgtccatc ggtctgaggc ttgctccaag agtctcttgg
      361 gcgatctccg cgactcgttt cttgtccaaa cgatcaccga caaccagcag acgatctact
      421 gaagatgcgc cgacagttcc gttcgatcct gcgcgctcac gatagaagag tagcacgcgg
      481 tggagttcat cgtcatactc cgaggtctcg caaaaaaccg accgcactgt cagcgggcga
      541 ttgtcgcgca tcagcaccgc cgtgaagcct tcatcatgcg tactcagcaa taatccatcg
      601 ccgcgctgcc cgttgcgcag ccactgttct tcgccggcgt ggcgtggcag gaccaggccc
      661 gcatgccagc ccaacgccgc aaacaccgct tcgtattccg cgagcaccga caggcgaact
      721 gcggtgacga gatagcgcgg ctgcccttgc gcgttcggcg ccaactgctc gcgggccacg
      781 cgcatttcgg aaagcgatgc accaaagctg cgctcgattt tccaatcgag cacttcttcc
      841 agttcgcggc gcgagccgga tgttccttcg attatcagta tcgccgttcg cgcggttgct
      901 tccggcagcg cgaccgacca cttgcgctgg cgcagcagtc cggcgctcgt cagcagatca
      961 gaaagtgcgc cgactagttc cgaaggatca gcgaaattgc catcgtcaaa actcggccgc
     1021 accaaatcag ccggcaagtc aactgaagcg gcgcgcttga cgacgaaact gccgcgcgca
     1081 cgttcgagct gcacgatcga agcagcctcc ctttcaatgc cgacggcaca agttgggagg
     1141 cgaggtttga gaagtttggc taacacagtg atcggtggcc agtgatcagt tgatactgaa
     1201 aactcaaaac tgaaaactcg aaacagattt taccattcgc tatacggcgt gcctgcggtc
     1261 gagacctctc ccgatgaact gtgcacgtcg gtgactccag agccgccttc ggtcgaattc
     1321 ggatcgtcgc ctgtgacaat gctccaatcc ttcttatcag tgatcgggtc aggcggaatc
     1381 tcacgcatgt atcgctcgct gacgagatca tccaatgact gcggcagttt gcctttgtcg
     1441 gcagcgtatt gatcgatgag cgagcgcatc ttgaaaagat cgtcgcgcaa gaccgtttcc
     1501 tgcgcgtgct tgattgtttt ttgatactgc ggtagcgcga cggaaacaag aatgatgaga
     1561 atcgagatga cgatcatcag ctcgagcaga gtgaagccgc gctctcgcgc gggccgggaa
     1621 aaaggggaaa ggagaaaggg gaaaggcaag aactgaatcc ttccttgccc ctttacccct
     1681 tcccctttgc cctttgcagc gttaccagtc actgtactta cccttcttat caagcggcac
     1741 gccatcagac ttcgaataca cgtcaaaaac attttcgccc cccgaggatg ttgccccagg
     1801 ttcgtcataa cacgagcgaa acccccaatc ggctttgccg gtcatcggat cgatcggaat
     1861 cgcacgcaga tagatttttg ttttgggcac tagctgagcg cttccgacgg ctgttgcgtt
     1921 gacgttgggg ttaccccgac cacccggcaa aatgccagtt acgaacggaa gcacgtctac
     1981 ccctttgacg agcgtgtcga gatcgggcgg atagcgatca ggattatcaa ccgtgaagat
     2041 cgtctgatcg ctgatgaaga cgcgagtgcg cgggtcggca gactgcggaa ctggattgtt
     2101 cggattgggc actgcgtttg cttcgcgatg aaactgatcg atcgcttcgc gcattgtgcg
     2161 cagagcctcg cgcagttgct gctctttttg tcgcttaact gagacctgga ccagcggaat
     2221 aactccgagc gtgagaatcg cgagcacggc gagcgtgatc accaactcga ttaaactgaa
     2281 gcccctgatt ctacgattcc tgaacatttc agttttcgat catgagccga ctaaggcttg
     2341 gttgccggcg gtctcggctg atctggagcg ggcttcggcg caggcgcgtc cggctgcttc
     2401 accgtcaact tgcttgagcc caaatcgagc atcgttggtc gtccatccgc agcgaccaga
     2461 tgaacgttgg acagatcgaa tacgagagcg ctatcacccg cgccgatcgc ttcgacctcg
     2521 atgttgagta gagcgccttc gccgctgacc gtcgagccgg caacgggcgc aaccgaaaca
     2581 agcagcatgc cgctctgatc agtagattgt gtaattgtcg gtgcgatctt cgcgttggcg
     2641 aaaatctttc cggcagagac gccgttaatt ttaatgacgc gcggatcgaa gcgcagcgtt
     2701 accagtgcga gtccgagcgg cgcgtctgag ttgaccttga ccgtgagttg tcgtttctcg
     2761 ccgacgaaca tctcggcttt ctcgggggcg agccgcagct ccataacgcc gcccgctcgt
     2821 ttattgggtt tcgcgttggc gtcagtcttt tcggacttga gcgcgagctg ctcgaccgcg
     2881 tttgacacgg tcgcgtccga cttggctggc gatgcagtcg tcgaaacgtt tgtcgttggc
     2941 gagacgacgt tcttgagcgc gctggccacg tccattgatc gcggcgcggg cggatctgtt
     3001 tgagttgaaa ccgccacagt tttcggctga ggcatcgccg catcagtttg cgcagcggca
     3061 agatcgcgat tagaggtcgc ggattgtttt accggctccg ttaagacggc tgactgcgtt
     3121 ttgaccggca cagtgtcctt gttttgtgaa acggaagtaa cttgtgccgt ggtagcagat
     3181 gccgcgacag cattctcagc tttgttggtg ttcgcgctcg cttgaccgtt cgcgattggc
     3241 gccgggacgt aggtcacggg cgcgtcggcc agttgcacgg cgacttcttt cggaatcctg
     3301 cgcgcggcgg cgatctgttc atcgcgttcc gtttcgcgca gcattgcttc aatcaagccc
     3361 gtcgtcggcg cagtcaacgt gccgctcttt cgcatctctt cgtcgcgcgg cgtcaacgcc
     3421 ggcgcgcgca acacgcgcgg cgtcaccgcg ataacgatgt caacttgccg attgtcttta
     3481 gtcggcgaag tgaataaccg gccgagcacg ggaacgagtc ccaatatcgg cagtcccttg
     3541 cgaccgttcg attgagtatc ggtagtgacg ctcgccaaca tcatcgtgcg gttgttctgt
     3601 atccgcgcgg tccccgtgat ctctcgctca gtgaacgtcg gagtcaacaa tccgcccacc
     3661 gagctggccc cgaatacatc attcgactta atcttcatct tgacctgcac gtccagattg
     3721 ggaaagacct gcggcgtaaa gttcaaagtc agacccgtag gctcgtaatt gattactgga
     3781 aagccacccg tcggaaatcc ggtgttattg ttcggtgttc cggtttggac gccaaatgga
     3841 aaagccgaag ccgtttgcac cggtacgcgc tggccaatgc gagccgtgga ctcttcaccg
     3901 ttgaaagcgt gcacctgggt ggaagcgagc aacctcgtgt gattcctgct ctgcagggcc
     3961 tggatgctgg aagcgggaag aatcagcgcc gcgccgaagg aagcaggcaa tcccacggcg
     4021 gttgcgccag tgccggtgat tactcgtgaa agttggccca gcggacttcc catcgcgcgt
     4081 acgcctccga gagtcgtcaa gctggagtcg tcaccgagtt gatttccaaa ttgcagcaaa
     4141 tcggtgcgcg acacttcgta aatgttcacg tccatcacaa cttcggcgcg atccttgtcg
     4201 atgctttgca gcaactcgcc aatgagttgg acgttttcag cggtgtcccg tactgtaata
     4261 ctgttcgtat ccttatcggg ccagacgatt gcttgtggcc gcccgacgga cgcgggcagc
     4321 acccgcgaaa tcaaatccgt cgccttagtg ggatcggcgt tcgaaatgaa aaacgtgcgc
     4381 accacgagtt gctgatattg ctggcggcgg tcctgaccgg caaccagaat cgtgcgatga
     4441 tcgagttttt gaaagaacaa accttcctgc aaaaagatcc agtccagcgc cttcgcggcc
     4501 gtcacgtcgc gcaagttgac atcgatcgaa cgcggctgga tgaatgtttg ccggtcgaac
     4561 atgacgttga ggttcaactg gtcggccatc attcgaatga acgccttcag gtcgccgctg
     4621 taattgatga cgcgcgccgg cccttgaatc gatgaaggcg caggctcttg cggctttgcg
     4681 gtcgttggcg cggacggagt tccgccgcca tcagccggtt ccgatctcgt tacgccgtca
     4741 cctcccgctg ttggccccgc ggtcattcct tccttcacct cctgcaggcg cagcatccgt
     4801 tccatttccg aaactgccag ttggttcacc ggatcgtatc cgaaggcctg gcggaacgcg
     4861 ttgtatgcgc cgacatagtc gcgctgctcg gccagcgagc gtccctgctg catgaacgtc
     4921 tgcgatgcat taaagagcga gcgacgatag tgcagttgat aatccacgtt cgatggatcc
     4981 gcggccaacg ccagcgtgaa ctcctgcgcc gcctgctccc atttctgtgc ctgctcgagc
     5041 ttcatgccgc gatcaaagtg gtccttgcct ttcttgccga gcgccatgac cggcacagac
     5101 agcaaacagg cgacgatgat cagggaaaca atcgagtgcc aacggatttt cagtttcata
     5161 atttacctct cggaatgcac agcctcgaaa aatcgatcgg tgattcggtg gagcccacgg
     5221 actctgccga cttacacgcc aatggatgac aaccagttcc gcaataccac aaactcaggc
     5281 agtttagcag aaaagcaagg cctaatctaa ggtggcagag ggggacgcgt gccactgtag
     5341 attcacttcc tcgacaaaag tcacgcgatt aatctcatgc agcgtcgaag cgccggcaaa
     5401 aacttttttc agcgcggatt cgcgcaagct ggtcagccct tcggcttgcg cggcacgacg
     5461 aacttccgaa ccggggcggc gctcgacgat catttcgcga atgttgtcgc tgagatcgag
     5521 cagttcgtga atcgccgtgc gtccgcgata gcccgtgtga ttgcacgcgt cgcagccgac
     5581 atttgcgtag aagatgcgat cgcgatgttc ttcgggcctg agacctgatt cgatcagctc
     5641 agtgtccgaa ggatgaaaag cacgacggca aatcgggcag agcacgcgaa tcaaacgttg
     5701 cgcgagcacg caattcagag acgaaacaaa gttgtaaggc tcgacgccca tgttcagaaa
     5761 acggccaatc acgtcgatga cgttgttcgc gtgcacggtc gtgaagacga ggtggccggt
     5821 cagcgctgac tgaatcgcaa tctgcgccgt ctcttcgtcg cgaatttcgc cgaccatgat
     5881 tttgtccgga tcgtggcgca ggatcgatcg cagcccgcgc gcgaacgtca atcctttctt
     5941 ctcgttcacc ggaatttgcg tgatgccgtg caattgatac tcgaccgggt cttcgatcgt
     6001 gatgatcttg tcttcttcat tccggat
//
LOCUS       DASZZE010000092         3626 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_36272, whole genome shotgun sequence.
ACCESSION   DASZZE010000092 DASZZE010000000
VERSION     DASZZE010000092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3626
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36272"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..551
                     /locus_tag="VHD88_01760"
     CDS             <1..551
                     /locus_tag="VHD88_01760"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HVS20539.1"
                     /translation="GDSIGGAIILDGKLWIGASGCAGEVGHITINTEGAECVCGNTGC
                     LETVASAPNIARRARERLGRDSTSSLSTLATEETLTAGDLARAATNGDDFSTMMIERT
                     GRFIGTAVASIINLLSIERIILGGGVMEAGDLILKPIIEEAGKRSFQPCFESTKIVAA
                     ELGADGVAIGAALLARDAHGWK"
     gene            complement(587..1153)
                     /gene="purE"
                     /locus_tag="VHD88_01765"
     CDS             complement(587..1153)
                     /gene="purE"
                     /locus_tag="VHD88_01765"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: protein motif:HMM:TIGR01162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009320 - phosphoribosylaminoimidazole
                     carboxylase complex [Evidence IEA];
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HVS20540.1"
                     /translation="MKSSKQKGARAGGKAKKSNSSSFIVPRSSLPLVAVIMGSKSDWE
                     TMRAASETLEQFGVAHECRVISAHRTPALASEFASTAESRGIEVIIAAAGGAAHLAGV
                     IAAHTTLPVLGVPIKSDALNGLDSLLSTVQMPAGIPVGTLAIGKAGATNAALLAIAIL
                     ANSRMALKQKLRDFRAAQEKKVRETKLD"
     gene            complement(1234..2691)
                     /locus_tag="VHD88_01770"
     CDS             complement(1234..2691)
                     /locus_tag="VHD88_01770"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: protein motif:HMM:NF006673.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HVS20541.1"
                     /translation="MPTVPITVAYGDGIGPEIMEATLHVLKEAGAKLDIQRIDIGEKV
                     YLAGNSSGIEPSSWDSLRTTKVFLKAPITTPQGGGYKSLNVTVRKTLGLYANVRPCVS
                     YHPFVETKHPGMDVVIVRENEEDLYAGIEYRQTDQVMQCLKLISRPGSEKIVRYAFEY
                     ARLHNRKKVTCFTKDNIMKLTDGLFHKVFNEIASEYPDIENEHWIVDIGAAKLADTPN
                     AFDVIVMPNLYGDILSDVAAQIAGSIGLAGSANIGENIAMFEAIHGSAPRRAGQNLAN
                     PSGLLMGAIMMLVHIGKTSVAEKVHNAWMRTIEDGIHTYDIYEEGNSKQKVGTKEFAQ
                     AVVDHLGKKPHTLKTVAYKHNGGAEIFGGETFVKERSDTKKDLIGVDVFLDWLKGSPD
                     NLGDALSKVAGDDLDLVMISNRGVKVWPGGKSETFCSDHWRCRFMSQNKGETISHQQI
                     IELLGRVAGAGFDFIQTENLCNFDGERGYSLDQGE"
     gene            2869..>3626
                     /locus_tag="VHD88_01775"
     CDS             2869..>3626
                     /locus_tag="VHD88_01775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20542.1"
                     /translation="MNDQAFATLEFDALRALVRRGAQTEMGRSRADSLAPIDDLSELH
                     RALRAVAEGIDLQQRGARLSFDGVTDPTDSIARLKIEGTALEPLAILDLARLCHAAMA
                     ARASILAEREACPTLFEIVAALPIELNKLTNVIAKTILPDGELDDRATPELVRIRLDI
                     AKARSRITRSLENLMRRSSEAIQEELVTVRNDRFVIPVRADHRGRISGVAHGSSSSGA
                     TIFVEPIETIESNNELQLLREAEQQEIAEILFALS"
BASE COUNT          730 a         1033 c         1018 g          845 t
ORIGIN      
        1 tcggcgactc gatcggcggt gcgatcattc ttgacggcaa actgtggatc ggtgcatcgg
       61 gctgtgccgg cgaagtcggg cacattacca tcaacaccga aggcgctgaa tgcgtctgcg
      121 gaaacaccgg ttgcctggaa acggttgcgt cggcgccgaa cattgcgcgc cgcgcccgcg
      181 aacggctggg gcgcgattcg acgtcgtcgc tctcaacttt agccacggaa gagactctca
      241 cggccggcga tctggcgcgc gcagcgacca acggcgacga cttttcgacc atgatgatcg
      301 agcgcacggg aagattcatc ggcacggctg tggccagcat catcaacctg ctgagcatcg
      361 agcggattat tttgggtggc ggagtgatgg aagccggcga tctgatcctc aagccaatca
      421 tcgaagaagc tgggaagcgt tcgttccaac cttgctttga atcaacgaag atcgtcgcgg
      481 cggaattagg tgcggacggc gtggcgatcg gcgcggcatt gctggcgcgc gatgcgcatg
      541 gttggaaata gccgggcagt agcccgaccg tgagagaggg ctcggttcaa tctaacttcg
      601 tctctcgaac tttcttttcc tgtgctgcgc gaaagtcgcg cagcttttgt ttcaacgcca
      661 tccggctgtt ggcaaggatc gcgatcgcca atagtgccgc gttggttgcg ccggcctttc
      721 cgatcgccag cgttcccact ggaattcccg ccggcatttg caccgttgac agtagcgaat
      781 caagtccgtt cagcgcgtcg ctcttgattg gcacgccaag caccggcagc gtcgtgtgcg
      841 cggcaatcac gccggccaga tgcgccgcgc cgccggcagc cgcgatgatt acttcgatgc
      901 cgcgcgattc cgcggtgctc gcaaactcag aagcaagcgc cggagtgcga tgcgccgata
      961 tgacgcggca ttcgtgcgcc acgccgaact gttcaagcgt ctcggaagcg gcgcgcatcg
     1021 tttcccagtc cgacttgctg cccatgatca cggcgaccag cggcaacgat gaacgcggaa
     1081 cgatgaacga tgaagaattg ctcttcttcg cttttccgcc cgcccgcgct cctttctgtt
     1141 tgctggactt catcttggtt cgatcttgtc ggctgcgtga aagctaacgg ctgaagagtt
     1201 tatcgttcat cgttccgcgt tcatcgttgc tcttcactcg ccttgatcca gcgaatagcc
     1261 gcgctcgccg tcaaaattgc acaggttttc agtctggatg aaatcgaaac ccgcgccggc
     1321 cacgcggcca agtagttcga tgatttgctg atgcgaaatc gtctcgcctt tattctgaga
     1381 catgaaacga cagcgccagt gatcggagca gaatgtttcg gacttgccgc cgggccagac
     1441 tttcacgccg cgattgctga tcatcaccag atccaaatcg tcgcccgcaa ctttactgag
     1501 cgcgtctccc agattgtcgg gcgagccttt caaccaatca agaaagacgt cgacaccgat
     1561 cagatccttc ttcgtgtccg atcgttcttt gacaaaagtt tcgccgccaa aaatctccgc
     1621 gccgccatta tgtttgtacg ccacggtctt tagcgtatgc ggcttcttgc ccaggtgatc
     1681 gaccactgcc tgcgcgaatt ctttcgtgcc gactttttgc ttgctgttgc cttcctcgta
     1741 aatgtcgtac gtgtgaattc cgtcttcaat agtacgcatc caggcgttat gaactttttc
     1801 cgcgacgctc gttttcccga tgtgaacgag catcatgatc gcgcccatca gcagccccga
     1861 aggatttgcc aaattttgcc ccgcgcgtcg tggcgccgag ccatgaattg cttcgaacat
     1921 ggcgatgttc tcgccgatgt tcgccgagcc ggccagacca atcgatccgg cgatctgcgc
     1981 ggccacgtcc gacaaaatgt cgccgtaaag attcggcatc acgataacgt caaaagcgtt
     2041 cggagtgtcg gccagcttcg cggcgccgat atctacaatc cagtgttcgt tctcgatgtc
     2101 gggatactcg ctggcaattt cgttgaagac tttgtgaaac agaccatcgg tcagtttcat
     2161 gatgttgtct ttcgtgaagc aggtcacctt cttgcggttg tgcagacggg cgtattcgaa
     2221 agcgtagcga acgatttttt ccgagcccgg acgcgatatc aatttcagac actgcatcac
     2281 ctgatccgtc tggcgatatt cgataccagc gtaaagatcc tcttcgttct cgcggacgat
     2341 cacgacatcc atgcctggat gtttcgtctc aacgaacgga tgataagaga cacaaggccg
     2401 cacgttcgcg tagagcccca gcgtcttgcg caccgtgaca ttcagacttt tgtaaccacc
     2461 gccttgtggc gttgtgattg gcgctttgag aaaaactttc gtcgttcgca gagagtccca
     2521 tgaactgggc tcgatccctg aactgtttcc cgccaggtaa actttctcgc cgatgtcaat
     2581 tctttggatg tccagttttg cgcccgcttc cttcaaaacg tgaagcgtcg cttccatgat
     2641 ttccgggccg atgccgtcgc cgtatgcaac tgtgataggt accgtgggca ttgaatgaat
     2701 gagtgccttt ctgtgtctaa tgagaagttg acgaatataa gccaaaagcg cgaagcgagc
     2761 aaagtcgcca ggcgttcaga gttcaacgtt tacgttgtcg attgcaaaag cacaagctga
     2821 agcttgaact ctaaactcag ttgtcggtgt taagattaac tttccaaaat gaacgatcag
     2881 gctttcgcaa cgttggagtt tgacgcgctt cgcgcattgg tgcggcgcgg cgcgcagact
     2941 gagatgggcc gctcgcgggc cgatagcctc gcgccgatcg acgatttgag cgagttgcat
     3001 cgcgctcttc gcgccgttgc tgagggtatt gatttgcagc agcgtggcgc gcggctgtcg
     3061 ttcgacggtg ttaccgaccc gactgattct attgctcgat tgaaaatcga gggtacggcg
     3121 ctcgagccgc tcgcgattct tgatctggcg cggctgtgcc acgcggcgat ggctgcgcgc
     3181 gcgtcgatcc tggcagagcg agaagcgtgt ccgacactgt tcgagattgt cgccgcgctg
     3241 cccattgagt tgaataaact caccaatgtc atcgcaaaaa cgatcttgcc cgacggcgaa
     3301 ctcgacgatc gagccacccc ggagctggtg cgcattcgac ttgacatcgc aaaggcgcgt
     3361 tcgcgaatca cgcgctcgct tgagaatctg atgcgccgtt cgagcgaggc gatccaggaa
     3421 gagttggtca ccgtgcgcaa cgatcggttt gtgattccgg tgcgcgccga tcaccgcggg
     3481 cgcatcagcg gcgtcgctca cggctcgtct tcatccggcg caaccatctt tgtcgagccg
     3541 atcgaaacga tcgaatctaa caacgaactg cagttgctgc gcgaagctga gcagcaggag
     3601 atagctgaaa ttcttttcgc gttatc
//
LOCUS       DASZZE010000093         6371 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_280343, whole genome shotgun sequence.
ACCESSION   DASZZE010000093 DASZZE010000000
VERSION     DASZZE010000093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6371)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6371)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6371
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280343"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..531)
                     /locus_tag="VHD88_01780"
     CDS             complement(<1..531)
                     /locus_tag="VHD88_01780"
                     /inference="COORDINATES: protein motif:HMM:NF012449.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0030955 - potassium ion binding [Evidence
                     IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HVS20543.1"
                     /translation="MKKAKILATLGPSSRDPKVIEALLAAGVDGVRINMSHGTPDEKT
                     NDVRLARAAAAKMNRPLAVLVDLSGPKIRTRTLKNHEPVTLVADQQFTITTREIEGDN
                     SQVATNYAGMPRDVRAGERVLLDDGAIELRVESANETDVVTRVINGGILGERKGINLP
                     GITLPIPSLTEKDREDL"
     gene            complement(542..1138)
                     /locus_tag="VHD88_01785"
     CDS             complement(542..1138)
                     /locus_tag="VHD88_01785"
                     /EC_number="2.1.1.100"
                     /EC_number="2.1.1.334"
                     /inference="COORDINATES: protein motif:HMM:NF016107.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxylmethyltransferase
                     family protein"
                     /protein_id="HVS20544.1"
                     /translation="MTIDLEILPTLVFGVVMLSWMTFAVVFFARKKPPAAPASKRERA
                     SIAGIVLQGFAYGIVWSVHRHFFSPIFVLSKPFEIALSVFTMMLAVASVWFTSAAVRT
                     LGEQWSLGARLIEGHKLITEGPYQVVRNPIYTGMLGMLLVTGLAISHWIGLLIAIVIF
                     AIGTVIRVRSEEKLLREAFGAEFEEYARTVPAVVPFLF"
     gene            complement(1260..1790)
                     /locus_tag="VHD88_01790"
     CDS             complement(1260..1790)
                     /locus_tag="VHD88_01790"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HVS20545.1"
                     /translation="MSSKSKVWIELALLILTLCVFSACKRPSAPAAPLENSPGGWSLA
                     NNQRAKLSDYRGKVVVLDFYATWCEPCRAETPHLVNMQKQYEPQGLQVVGLNVGGEDD
                     RGEVPKYAKEFGIQYPLGFPDDEFADHYLSDNQNIPQAFVFDRSGRLVKRFVGYNEEG
                     GRELERVVQVSLSQAQ"
     gene            complement(1783..1998)
                     /locus_tag="VHD88_01795"
     CDS             complement(1783..1998)
                     /locus_tag="VHD88_01795"
                     /inference="COORDINATES: protein motif:HMM:NF015821.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor YacG"
                     /protein_id="HVS20546.1"
                     /translation="MSKCPTCGKPVEWKDNLWRPFCSERCKLIDFGRWADEEYRVPGQ
                     RINAAEIAEPSADETEDDENAATVNRE"
     gene            2135..3130
                     /locus_tag="VHD88_01800"
     CDS             2135..3130
                     /locus_tag="VHD88_01800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20547.1"
                     /translation="MTDYKEKLDDLHRAARRKARELDEKLGVSGIVEDTARVAGDAAR
                     LGAQTIANGAEQLRAEAGRLADDPNLRDNARRAANEAKRRAKDAGKTIRDAAGDASKI
                     IRDAAGPAGKKAEKVFDEAVDYATTATKFAGKGVRATRAGAAATAGILKAKGWVKENP
                     GKAAAVSFSLILGVRMGAAFPGLDAVLLGSHPHWLTHSALPVWGLKKASEKFDGYLRK
                     QEELIARGELDEAERERVEFQRKITKYIGAPLLGAFSCAAGAAMFAQIVHPVGITGAP
                     ISWLLGGNPFLDGVWLFANGVICFHQGYKFFMIALADQEEVNRVVREIKGLLPAA"
     gene            complement(3322..4044)
                     /locus_tag="VHD88_01805"
     CDS             complement(3322..4044)
                     /locus_tag="VHD88_01805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20548.1"
                     /translation="MTKPKLPKEFIKLCKKVTAKRPRVVIDHILKHGHITTEELKSGY
                     GYDHPPRAARDVREQGIPLVTSRVTSSTGRKIGAYTFGDPSKIRFGRVGGRTSFSKKL
                     KKQLIEKDGARCAIYLEDFPEQDLQIDHRIPFEVMGDEARTDKQPKNCMLLCGSANRA
                     KSWSCEHCANWLELKDASICRSCYWAYPETYSHIAMRVARRMDIMWTGAEVEIYDRLK
                     KKTKKLQQEMPSFVKKIIERNL"
     gene            complement(4041..4955)
                     /locus_tag="VHD88_01810"
     CDS             complement(4041..4955)
                     /locus_tag="VHD88_01810"
                     /inference="COORDINATES: protein motif:HMM:TIGR00571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HVS20549.1"
                     /translation="MNVPHPIPYQGSKRNLASEILRYFPAKIETLYEPFAGSAAISLA
                     VAANKRAKAVHLNDLNKPLVDLWRAIVTTPEKLAKDYEALWRDQLDDPKAYYNKIRDE
                     FNLTGRPDYFLYLLARCVKASVRYNANGEFNQSPDNRRRGATPATMREQILGASFLLK
                     GKTTFSSKNYRDAVLQATEADLVYMDPPYQGVCGNRDTRYLASVQFCEFVEVLEKLND
                     RSIRYIVSYDGRTGSKVHGVRLPGRLNLTHMELNAGRSSQATLLGRDDATVESLYLSP
                     ALGKELSKPKMIYRFTHSEQISLLEARA"
     gene            complement(5027..6073)
                     /locus_tag="VHD88_01815"
     CDS             complement(5027..6073)
                     /locus_tag="VHD88_01815"
                     /inference="COORDINATES: protein motif:HMM:NF014244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HVS20550.1"
                     /translation="MSQANETITPISELSEPTTHHIPRPTVRQWALHAALFVVTAITI
                     TISGIAWLGGQDVDAAGGSPPGTGGFAGSLLLIPWYYISGVWSLVWQALTHPAMLVSG
                     VEFSASLLAILACHEAGHYVFCRYYGVDATLPFFIPQPPLLIPGTFGAFIRMKSPVPS
                     RRALFDIGLAGPLAGFIVIIPIAFVGVLTLHHVQLIAGEVGGGGGGITFNDPLLFRLI
                     ARAFRVDLDNSTANSFYLAAWFGALVTALNLMPVGQLDGGHGTFAVFGKLAHHWIGRV
                     AFVTMAVISVLGWLWHGSPSGFVYVVLLAVMLNVRHPQPEQMEPLGTMRVAVGIVTLI
                     VFALCFLPFPITIG"
BASE COUNT         1431 a         1823 c         1726 g         1391 t
ORIGIN      
        1 cagatcctcg cgatcctttt cggtcagcga agggataggc agcgtgatgc ccggcagatt
       61 gattcccttc cgctcgccga gaatgccgcc gttgattact cgcgtgacga catccgtctc
      121 gttggcgctc tcaacccgaa gttcgatcgc gccgtcgtcc agcagcaccc gctctccggc
      181 gcgtacgtcg cgcggcatgc ccgcgtagtt cgtcgcaacc tgagaattgt cgccttcgat
      241 ctcacgagta gtgattgtga attgctggtc ggccaccagc gtaaccggtt cgtgattttt
      301 gagcgtgcgc gtgcgaattt ttggtcccga gagatccacc agcaccgcca gcgggcgatt
      361 catcttcgcg gcggcggcgc gcgccaggcg aacgtcattc gtcttctcgt ccggcgtgcc
      421 gtgcgacatg tttatgcgga cgccgtcaac gccggcggcc aacaacgctt cgatcacctt
      481 cggatcgcgc gatgatggac caagcgtggc gagtatcttt gcttttttca aagttgatct
      541 ctcagaaaag gaagggcacg acggcgggaa cagtgcgggc gtactcttcg aactccgcgc
      601 caaacgcttc gcgcagaagc ttctcttcgc tgcgcacgcg aatcacagtt ccgatcgcga
      661 agatcacaat cgcgatcaat aatccaatcc aatggctgat cgccaaaccc gtcaccagca
      721 acatgccgag cattcccgtg taaatcggat ttcgcacgac ttgatatggg ccttcggtaa
      781 tcaacttgtg accttcgatc aaacgcgcgc ccagactcca ctgctcgccg agtgttcgca
      841 ccgccgcgga cgtgaaccaa accgacgcga ccgccaacat catcgtgaat acggacagcg
      901 cgatttcgaa aggtttgctc aacacaaata tcggactgaa gaaatgacga tgcactgacc
      961 acacaattcc gtaagcaaag ccttgcagca cgatgccggc aatcgacgct cgttcgcgct
     1021 tgcttgccgg cgcagcgggc ggtttcttgc gcgcgaaaaa gacaacggcg aacgtcatcc
     1081 agctcagcat cacgacgcca aagaccagag tcggcaaaat ttccagatca atcgtcattt
     1141 tagttttccg taatagcctc tttgccgtct catcaaagca cagcctttag tctgtcgcca
     1201 caaagctacc cgctcgccac tgctcgcggt tccgtaccaa aatcctgagc aatcgctatt
     1261 cactgtgcct gcgacagaga aacttgaacc acccgctcca gttctcttcc gccttcttca
     1321 ttgtaaccga cgaagcgctt gaccagacgc ccgctgcgat cgaatacgaa cgcttgcgga
     1381 atattttgat tgtcactcag gtaatgatcg gcgaattcgt cgtcgggaaa tccgagcggg
     1441 tattgaatgc caaactcttt cgcgtatttc ggaacctctc cgcgatcatc ttcgccgccg
     1501 acattcagac ctaccacttg caatccctgt ggttcgtatt gcttttgcat gttgaccagg
     1561 tgcggagttt cggcgcggca cggctcacac catgttgcat aaaagtcgag cacgacaact
     1621 ttgccgcgat aatccgaaag cttcgcgcgc tggttgttcg caagactcca accgccgggg
     1681 ctgttttcta acggcgcggc gggagcgctc ggcctcttgc acgcgctaaa cacgcaaagg
     1741 gtcaagatca gcaacgcaag ctcaatccaa actttcgatt tgctactcac gatttactgt
     1801 tgcggcattc tcatcatctt cagtttcatc cgcggatggt tctgcgattt ccgcagcgtt
     1861 aatgcgctga cctggcaccc gatattcttc gtcagcccag cggccgaaat caatcagctt
     1921 gcatcgttca gagcagaacg gtcgccagag attgtctttc cattcgaccg gcttaccgca
     1981 agttggacac ttcgacacta ggcaaaagta agaaggaagc gcgtaaaagt aaaggccggg
     2041 ggcagaagcc cgaccgtcag ggagggcgcg attctctttt cctgaactcc ctctcgcctc
     2101 gtggcgtaga ataagcttga ggagttcacg agcgatgact gattacaaag agaaactcga
     2161 tgacctgcat cgcgccgcgc gtcgcaaagc gcgagagcta gacgagaaat tgggcgtgag
     2221 cggcatcgtt gaagacaccg cgcgcgtcgc gggcgatgcc gcgcgtttgg gcgcgcagac
     2281 gatcgcgaac ggcgccgagc aactgcgcgc cgaagctgga cgtctcgctg atgatccaaa
     2341 tttgcgcgac aacgcgcggc gtgcggctaa cgaagcaaaa cgtcgcgcga aggacgccgg
     2401 caagactatt cgcgatgcgg ccggtgacgc tagcaagatc attcgcgacg ccgctggacc
     2461 cgcgggcaag aaagcagaga aagttttcga tgaagcggtt gactatgcga ccaccgccac
     2521 gaaatttgcc ggcaaaggcg tgcgcgccac gcgcgcgggc gcggccgcga ccgccggaat
     2581 tctgaaagcg aaaggttggg tcaaagagaa tcccggcaaa gccgccgccg tttcgttctc
     2641 gttgattctg ggcgtgcgca tgggcgcggc gtttcccggg ctcgacgcgg tgctgctggg
     2701 ttcgcacccg cactggctga cgcattcggc gcttcctgtt tggggtttga aaaaagcgag
     2761 tgagaaattc gatggctatt tgcgcaagca ggaagaactg atcgcgcgcg gtgagttaga
     2821 cgaagccgag cgcgagcgag ttgagtttca gcgcaagatt acaaagtaca ttggcgcgcc
     2881 tttgctgggc gcgttcagtt gcgccgcggg cgcggcgatg ttcgcgcaga tcgttcatcc
     2941 ggttggaatc acgggcgcgc cgataagctg gttgctcggc ggtaatccct tcctcgacgg
     3001 cgtctggcta ttcgccaacg gcgtcatctg cttccatcaa ggctacaagt tcttcatgat
     3061 cgcgctggcc gatcaggaag aagtgaatcg ggtggtgcgc gagattaagg gcttgttgcc
     3121 agcggcgtag tgcgaattgc aaatcacgac agattcgcaa ctcaagttag tccgtgtacc
     3181 tacgccgaag gcgttcgata acttagcccg gcgtaacacg ccgggttaga atccacccat
     3241 cacgttccta accctgaaag ggttaaatac aaaatggagg actctcacca tgtcgcaatc
     3301 tctctctcag agatatagtt ctcagagatt tcgttcgatg atcttcttca caaacgaggg
     3361 catttcctgc tgaagctttt tcgttttctt ctttaaccgg tcgtagattt caacttcagc
     3421 gcctgtccac atgatatcca ttcggcgcgc tactctcatc gcgatgtgcg agtaggtctc
     3481 cggataggcc cagtaacaag atcggcaaat gctggcgtcc ttcagctcaa gccagtttgc
     3541 gcaatgctcg caggaccaag acttcgcgcg attggcggac ccacagagca gcatgcagtt
     3601 cttgggctgc ttgtccgtac gcgcctcatc tcccatgact tcaaaaggaa tgcgatgatc
     3661 gatttgcagg tcttgctcgg ggaagtcttc aaggtatatc gcgcatcgcg ctccgtcttt
     3721 ttcgataagt tgctttttca actttttgga aaacgatgtg cgcccaccaa cgcgcccaaa
     3781 cctgatctta gagggatcac caaacgtata agctccgatc tttctgccgg tcgacgacgt
     3841 cacacgtgac gtaaccaagg gaatgccctg ctccctgacg tcacgagccg cacgtggagg
     3901 atgatcatat ccgtaccctg acttgagttc ttcggttgtg atgtgaccgt gtttgaggat
     3961 gtgatcaatc acgacacgcg gtcgctttgc cgtgaccttc ttgcagagct tgatgaattc
     4021 cttgggaagc ttgggtttgg tcatgctctc gcttccaaga ggcttatctg ttcgctgtga
     4081 gtgaagcgat agatcatttt gggcttgctc agttccttcc caagcgcggg tgacagataa
     4141 agagactcaa cggtcgcgtc atcgcgaccg aggagagttg cctgcgatga tcgccctgca
     4201 ttgagttcca tgtgagtgag attcaagcgt cctggaagcc ttacaccatg gactttgctg
     4261 cccgttcgtc cgtcatagct cacaatgtat ctgatactac ggtcattgag cttttcgaga
     4321 acttcgacaa actcgcagaa ttgaacgctt gccagataac gcgtatctct gtttccacag
     4381 acgccctgat atggtggatc catgtaaacc aaatcagctt cagtcgcttg caagacagcg
     4441 tcacgatagt tctttgagga gaacgtagtt tttcctttca gaaggaaaga agctccaaga
     4501 atctgttcgc gcattgtcgc gggtgttgct ccacgtcgcc gattatcggg actttgattg
     4561 aactcgccgt ttgcgttata gcgaacagat gcctttacac atcgggcgag taagtaaagg
     4621 aagtagtcgg gcctgcctgt caggttgaac tcatctcgga tcttgttgta gtaggccttt
     4681 ggatcatcta gttgatccct ccaaagcgcc tcgtaatcct tggccagttt ctccggcgtg
     4741 gttacgatcg cacgccagag gtcaacaaga ggcttgttca ggtcatttaa gtgaacagct
     4801 ttcgcccgct tgttcgcagc cactgcgagt gatatggccg ccgatccggc aaagggttcg
     4861 tacaaagttt caatcttagc gggaaagtac cgcaagattt cacttgccag gttccgtttg
     4921 ctcccttgat acggaattgg atgaggaaca ttcatgtccg aagcatatcc gctgtctgct
     4981 ttgttttcaa ctcatcttca gtcgctcacc gaatgcgagg cctagcttac ccaatcgtaa
     5041 ttggaaacgg cagaaagcaa agcgcaaaga cgatcagcgt gacaatgccg acggcgacgc
     5101 gcatcgtacc aagaggttcc atctgttccg gctgcgggtg gcggacgttg agcatcaccg
     5161 ccagcagcac gacgtaaacg aatccgctcg ggctgccgtg ccacagccaa ccaagaactg
     5221 aaatcaccgc catcgtcaca aacgcgacgc ggccgatcca gtggtgcgcg agctttccaa
     5281 acaccgcgaa cgtcccgtga ccgccgtcga gctgaccaac cggcatcaga ttcaaagcag
     5341 tcactaacgc gccaaaccac gcggcgagat aaaaagaatt cgcagttgag ttgtcgagat
     5401 caactctgaa cgcgcgcgcg atcagtcgga acaagagcgg atcgttgaac gtgattccgc
     5461 cgccacctcc accaacttcg ccggcaatca gctgcacgtg atgcagcgtc aacacgccca
     5521 caaacgcgat cggaatgatc acgatgaatc cagcgagggg tccggccagt ccaatatcga
     5581 acaacgcgcg tcgcgaaggc accggcgatt tcattctgat gaacgcgccg aacgtgccgg
     5641 gaatcagcag cggcggttgc ggaataaaaa acggcagcgt cgcatcgacg ccatagtagc
     5701 gacagaaaac gtaatgcccg gcttcatgac atgcgagaat ggcgagcagc gaagctgaaa
     5761 actcgactcc cgaaaccagc atcgccgggt gagtgagcgc ctgccaaacc agcgaccaga
     5821 ctccactaat gtagtaccag ggaatcagca gcagagagcc agcaaagccg cccgtgcccg
     5881 gcggtgagcc gcccgccgcg tcaacgtcct ggccacccag ccaggcaatt cccgaaatgg
     5941 ttatcgtgat tgcggtgacg acaaacaacg ccgcgtgcag cgcccactgt cgaaccgtcg
     6001 gtcgcgggat gtggtgcgtg gttggctctg acagttcgga aattggtgtg attgtttcgt
     6061 tggcttgcga catgaactct tccgatcaaa accgaaagcc agaattcacg aactagcaaa
     6121 agcgccttcg gtgctttgat gctggttcaa gaatcctggc ttcaactcag ccgatgattg
     6181 tagcgcctca gccgtgctcg ccgtcagtgt gcctgcaatt ccttgcccgg cttaaatcga
     6241 atcgtcttgc ccgaagggat agcgacttct tcgccggtgc gcggattgcg acccacgccg
     6301 cgcttgcgtg gcttcacgac gaacacgcca aagccgcgca actcgatgcg gtcgccgcgc
     6361 gccagcgctt c
//
LOCUS       DASZZE010000094         4872 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_148218, whole genome shotgun sequence.
ACCESSION   DASZZE010000094 DASZZE010000000
VERSION     DASZZE010000094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4872)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4872)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4872
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148218"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1150
                     /locus_tag="VHD88_01820"
     CDS             <1..1150
                     /locus_tag="VHD88_01820"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HVS20551.1"
                     /translation="VNSGDLLWSDRIDADATDIINVQDTITQQICDGLRLELSSDEKD
                     RLEQGKTANAEAYEEYLRGRDCLGRYVYHTVARKDVDEAIEHFERAADLDPSFALAHS
                     ALGAAYASRVMKGFGEPGDHALAQEAFDKALARDPHLIEARMNMIFIYLSRGEKAKAR
                     RAADELRREAPNDASVHFVRGVLARLDGDYDKARRSLDRMARLNPTERVVVSYNRARL
                     LTYQGRYEEALAELDEGAAIEPDHPLIKTFRARALYYHGEPVKAAEILEQVLEQHPQL
                     DGIRPIYATFLSALGWHEDARAQLTDEVRQTADTDHDVAYWLASALALEGEREEALKW
                     LRRAIELGNENKPWFERDKNWDSLRDDPEYQRIIGAISTPLPEGPEGQ"
     gene            1217..2014
                     /locus_tag="VHD88_01825"
     CDS             1217..2014
                     /locus_tag="VHD88_01825"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase family protein"
                     /protein_id="HVS20552.1"
                     /translation="MKTFVVGDIHGRCAQLHSLLEMLPRDESADNLIFLGDLIDRGAD
                     VPGCVEHVLNLCRENPEKVICLRGNHEQMLLDFLDDADTIWMTTATGSDQTFRQYTET
                     PLRLRTEADFEVARNLILQKLPAAQIDFFRALPLYHEDEFALYVHAGLENGKHPRDSS
                     PHALLWTRDMDFYKSYRGKPCVFGHTPTPFLPWRGRLGRHGIYVFNSAIGIDTGYNLH
                     SPLTCLSLPDFTLYQTFADGHTATHHITSFIPETLKAMQRKAATTGQ"
     gene            complement(2242..3807)
                     /locus_tag="VHD88_01830"
     CDS             complement(2242..3807)
                     /locus_tag="VHD88_01830"
                     /inference="COORDINATES: protein motif:HMM:NF015995.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter
                     substrate-binding protein"
                     /protein_id="HVS20553.1"
                     /translation="MLEFLRANWSDILAHIAQHAWLVFISTAIAIVIALPVGILITRR
                     KRLRGPLLGIANVMQTIPSLALFGFLIPLPFIGGIGPRTAIVALVFYALLPIIRNTVT
                     GILGVDRNVREAAVAMGMTDRQVLFQVELPLAMSVILTGVRVAVVITIGVAIIAAEVS
                     AGGLGEYIFRGLRNDDTHLLLAGAVPSALMALLADFGFSVIEKRFDTSTNRATKSNQN
                     LRRIAWATVALGIVLMGYTAWRGMRSRSNSSASHGHVTVGSKDFTESILLAEIVAQML
                     EAKNIQVDRVFDLGGNLAHNAIVAGQIDLYPEYTGTSFAAILHHQPISDPRAVYDQVK
                     REYAQQFNVEVSPPLGFENTYAILVRGEDARRLNLKTISAAAAYASQWRVGFGQDFMS
                     RADGYAGFSRAYGLQFAESPHEMALDLSYTALASHKVDLIAGNSTDGRIAALDLVQLE
                     DDRRYFPPYEAVLLARKDASGRVPALREVLQKLAGAISTEEMCKLNYQVDGEKRDKKN
                     VVRAWLNSKGLIK"
     gene            complement(3825..4598)
                     /locus_tag="VHD88_01835"
     CDS             complement(3825..4598)
                     /locus_tag="VHD88_01835"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HVS20554.1"
                     /translation="MTVSQPQDIHEPLVEFRDVSFAVNGGPPIIDRLNLSVARGETMV
                     LLGESGCGKTTTLRLVNRLLAPTAGDVFVEGKPTTQWDAIRLRRHTGYVIQEAGLFPH
                     FTVEQNVALVPSLERWDEARIRERVRELLSIVGLDAEKFAPRYPRELSGGQRQRVGVA
                     RALAADPPLLLMDEPFGALDPLTRAALQKEFAELRARLAKTVIFVTHDVREALMLGSR
                     IALMDAGRIVLLETPQGFVKSQDEHARAYLETLRNDFVV"
BASE COUNT         1070 a         1449 c         1354 g          999 t
ORIGIN      
        1 cgtgaactcc ggcgatctgc tttggagcga tcgcatcgac gccgatgcca ccgacatcat
       61 caacgtgcag gacacgatca ctcagcagat ttgcgacggc ctgcggctcg agctgtcttc
      121 agatgagaaa gatcgtctgg agcaaggcaa gaccgccaac gcggaagctt acgaagaata
      181 tctgcgcggg cgcgattgtc tcgggcgcta tgtctatcac acggtcgcgc gcaaggacgt
      241 tgatgaagcg attgaacatt tcgaacgtgc ggcggatctc gatccttcgt tcgcgctggc
      301 gcacagcgct ctgggcgccg catatgcaag ccgcgtgatg aaaggctttg gcgagcccgg
      361 cgatcacgcg ctggcgcagg aagcattcga caaagcgttg gcccgcgatc cgcacttgat
      421 cgaagcgcgc atgaacatga tttttatcta tctgtcgcgt ggagagaaag cgaaggctcg
      481 cagggcagcg gatgaattgc gacgtgaagc gccgaatgat gcgagtgtcc attttgtccg
      541 tggcgtgctg gcgcgactcg acggcgatta cgataaggcg cggcgcagtt tggatcgaat
      601 ggcgcgttta aatccgactg agcgcgtcgt cgtcagctac aatcgcgcgc gactgctcac
      661 gtaccagggc cgctacgaag aagcgcttgc cgagctcgac gaaggcgccg cgattgaacc
      721 cgatcatccg ctgatcaaaa ctttccgcgc ccgcgcgctt tattaccatg gcgagcctgt
      781 gaaggccgca gagatcctcg aacaagtttt ggagcagcat ccgcaactgg acggcattcg
      841 ccctatctat gcgaccttcc tgagcgcgct gggctggcac gaagacgcgc gcgcgcaact
      901 gaccgatgaa gtacggcaga ctgccgacac cgatcatgac gtggcttact ggttggcgtc
      961 ggccctggct ctcgaaggcg agcgcgaaga agcgctcaag tggctgcgtc gcgcgatcga
     1021 actgggtaac gaaaacaagc cgtggttcga acgcgacaag aattgggatt cgctccgcga
     1081 cgatccggag tatcaaagaa tcatcggcgc gatcagcaca ccgcttcccg aaggacccga
     1141 ggggcagtag ccctaccgtc agggagggct tgagcgcgct agctcccctc tcccagaggg
     1201 agagggaatt tcgcttatga aaacattcgt cgtcggcgac attcacggac gctgcgcgca
     1261 gcttcacagt ttgctggaga tgctgccgcg cgatgaatcg gctgacaatc taattttcct
     1321 cggcgacttg atcgatcgcg gagctgatgt gccgggatgc gtcgagcacg tcctgaatct
     1381 ctgtcgcgaa aaccctgaaa aggtcatctg tctgcgcggc aatcacgagc agatgttgct
     1441 cgattttctg gacgacgccg acacgatctg gatgaccacg gcgacgggca gtgaccagac
     1501 gtttaggcag tacaccgaaa caccattgcg tctgcgcacc gaagccgact ttgaggtggc
     1561 gcgcaatctg attttgcaaa aacttccagc cgcgcagatt gatttctttc gcgcgttgcc
     1621 gttgtatcat gaagatgaat tcgcgcttta cgttcacgct ggtttggaaa acggcaagca
     1681 tccgcgtgac agttcgccgc acgcgctgct gtggacgcgc gacatggatt tctacaagag
     1741 ctatcgtggg aagccttgcg tgttcggcca cacgccgacg ccgttcttgc cctggcgcgg
     1801 ccgcctgggc cgccatggga tttatgtctt caacagcgct atcggcatcg acaccggcta
     1861 caacctgcac tcgccgctca cctgcctgtc cctgcccgac ttcaccctgt accagacgtt
     1921 cgccgacggc cacaccgcga cccatcacat cacttcattc attccggaaa cgttgaaggc
     1981 gatgcaaagg aaggccgcga ccacggggca gtagcccgac cgtaagggag ggcgttagat
     2041 tttgccacag aggcacagag acaccgagaa aaacaatcag ggaaaaacga aatgttcttc
     2101 ttgtctcaat ctctgtgtct ccgtgcctcc gtggcttacg tcgttttagt caacgcaatg
     2161 atcggatcca gacgcgccgc tttgaacgcc ggatagatgc cgaagatcat tccaatcacg
     2221 gtcgagacaa tcagcgccgt atcacttgat cagtcctttt gagttaagcc atgcgcgcac
     2281 aacatttttt ttatcgcgct tctcgccgtc aacttgataa ttcagcttgc acatctcttc
     2341 agttgagatc gcgccggcga gcttttgcaa gacttcccga agcgctggca ctcgcccgct
     2401 cgcatccttg cgtgccagca aaacagcttc gtatggcgga aagtagcgtc ggtcatcttc
     2461 cagttgaacc agatcgagcg cggcgatgcg gccatcggtc gagttgccgg caattagatc
     2521 gactttgtgc gaggccaacg cagtgtaact tagatcgagc gccatttcgt gcggagattc
     2581 ggcgaactgc aagccgtaag cacgcgagaa tccggcatag ccatctgcac gcgacatgaa
     2641 gtcctgacca aaaccaaccc gccactgaga tgcgtacgcg gctgctgctg aaatcgtttt
     2701 caaattcaaa cgacgcgcgt cttcgccgcg caccagaatc gcatacgtgt tctcgaaacc
     2761 aagcggcggg ctaacttcaa cgttgaactg ctgcgcgtat tcgcgcttga cttgatcgta
     2821 aactgcgcgc ggatcagaga ttggttgatg atgaagaatc gccgcgaacg acgtgcctgt
     2881 atattccgga tagagatcga tctggccggc aacgatcgcg ttgtgagcca ggtttccgcc
     2941 gagatcgaaa acccgatcga cttgaatgtt tttcgcttcc agcatctgcg cgacgatctc
     3001 ggcgagcaag atcgattcgg tgaaatcttt cgaaccgacg gtaacgtggc cgtgactagc
     3061 ggaagaattt gaccggctcc gcatcccgcg ccaggccgtg tatcccatca gaacgattcc
     3121 cagcgccacc gtggcccagg caattcttcg cagattctga ttcgacttag tcgcacgatt
     3181 cgtgctcgtg tcaaatcgct tttcgatgac actaaaacca aaatccgcca acaacgccat
     3241 tagtgccgag ggcactgcgc ccgccagcag cagatgcgtg tcgtcatttc ggagtccacg
     3301 aaagatgtat tcgcccaaac caccggcgct gacttcagcg gcgatgatcg cgacgccgat
     3361 cgtgattacc actgcgactc gcacgccggt gaggatgacg ctcatcgcca gcggcagttc
     3421 aacttgaaac agcacttgcc gatcggtcat gcccatcgcg acggcggctt cgcgcacgtt
     3481 gcgatcgacg ccgaggattc ccgtgacggt gttgcgaatg atcggcagca gcgcatagaa
     3541 aaccagcgcc acgatcgccg tccgtggacc gatgccgcca atgaatggca acggaatcaa
     3601 aaagccgaag agcgccaggc ttggaatcgt ctgcatcacg ttcgcgattc ccagcaacgg
     3661 cccgcgcaaa cgcttgcgcc gcgtgatcag aatcccgacc ggcaaagcga tcacgatcgc
     3721 aattgccgtc gagatgaaga cgagccacgc gtgctgcgcg atgtgcgcga gaatgtccga
     3781 ccagttggct ctgagaaatt caagcatcgg gcgatatcga ttctctaaac aacgaaatcg
     3841 ttccgcagcg tttccaaata cgcccgcgca tgctcgtctt gcgatttcac aaacccttgc
     3901 ggcgtctcca gcaaaacgat cctccccgcg tccattaacg cgatccgcga accgagcatc
     3961 agtgcctcgc gcacgtcgtg cgtcacgaag atcaccgtct ttgccagacg cgctctcaat
     4021 tcggcgaact ctttctgcaa cgcagcgcgc gtcaatggat cgagcgcgcc gaacggctca
     4081 tccatcaaca acagcggcgg atcggccgcc aacgcgcgcg ccacgccgac gcgctgtctt
     4141 tgccctccgg aaagttcgcg cggatagcgc ggcgcaaact tttccgcgtc gagaccgacg
     4201 attgaaagta attcgcgcac acgctcgcga atgcgtgcct cgtcccagcg ctcgagcgat
     4261 gggaccagcg ccacattttg ctcgaccgtg aaatgcggaa acagtccggc ttcctgaatc
     4321 acataaccag tatgccgccg caaacgaatc gcatcccatt gcgttgtcgg tttgccttct
     4381 acgaaaacat cgcctgcggt cggcgcaagc aaacgattca ccaaccggag cgtcgttgtt
     4441 tttccgcaac ccgattcgcc gagcagcacc atcgtctcgc cgcgcgcgac gctgagattc
     4501 aaccgatcga tgatcggcgg accgccgttc accgcaaagc tgacgtcgcg gaattcgacg
     4561 agtggttcgt gaatgtcctg gggttgcgaa actgtcattg ttttaagccc gccgagtcta
     4621 tcaaaagccg gcccttcttt ggagtgcgcc gactgtggtg gcgctttgga ttcttgatgg
     4681 cgtccaaagc tccttcgcgc tacgcttgcc accgcactgc taagtgaatg ttcaagagtc
     4741 aactctacat tcgagagcag tttttgattt ctcggttttt gacactacag cgtcttcgac
     4801 ctgaagagag actgactgct attcgtggca cgactcaagt ggtcgtcaca ctctcgtgga
     4861 tgcggccctc tc
//
LOCUS       DASZZE010000095         6829 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_165484, whole genome shotgun sequence.
ACCESSION   DASZZE010000095 DASZZE010000000
VERSION     DASZZE010000095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6829)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6829)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6829
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_165484"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1704
                     /gene="thrS"
                     /locus_tag="VHD88_01840"
     CDS             <1..1704
                     /gene="thrS"
                     /locus_tag="VHD88_01840"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR00418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004829 - threonine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006435 - threonyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HVS20555.1"
                     /translation="LDLFPGTKLGIGPALLEDPRYGFFYDVIAPRPLTEVDLPVIEKK
                     MRDIAKRNMPYRRDEISKAEALRIFAERDEPLKCELIDEKAGEVVSVYYIDGSPFIDF
                     CLGPHVPNTNRLRAFKLLSLAGAYWKGDAERPQMQRIYGTAFFTPEELDAWLKQREEA
                     EKRDHRRLGRELDLFSIQEQYGQGLVFWHPKGGVIRRQMEDYLRNELMSRGYGLVFTP
                     HIAKRDLWFVSGHEENYADVMFSPTELEETEFRLKPMNCPFHIGIYKSSQHSYRDLPL
                     RYAELGTCYRAELSGTLHGLMRVRGFTQDDAHIFCTPETVRSEIVSCIQFAFALLGAF
                     SFDKFKIELSVKGNNTAKKYLGSDEDWERAESALVQALEEQNLPYERMEDEAAFYGPK
                     IDIKVEDAIGRLWQLTTIQFDFNLPERFELEYIGEDNKPHRPIMIHRALFGSLERFFG
                     VLIEHYAGAFPMWLAPVQVALLPITDRINEYAEQIAQELRAVGLRVDVNVRSDKIGAK
                     IRDAQMQKVPFMLVLGDREMQESTVAVRERSKGDIGAMPLDEFKQMARRLVETRAITN
                     T"
     gene            1854..2417
                     /gene="infC"
                     /locus_tag="VHD88_01845"
     CDS             1854..2417
                     /gene="infC"
                     /locus_tag="VHD88_01845"
                     /inference="COORDINATES: protein motif:HMM:TIGR00168.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HVS20556.1"
                     /translation="MNERIRVPQVRVVGEEGEQLGVMDTRDAIRKAREVRMDLVEVAA
                     GADPPVCRIIDFGKFQYEAKKKANEAKKKQVFVTVKEVKFRPSTDEHDYSYRMKHARE
                     WLQEGDKVKATIWFRGREMAHRELGARILAKLEKDLADISEVEMRPRMEGNQMSIFFG
                     PKRHKGSKTTENDERGTMNTGSANPSS"
     gene            2456..2659
                     /gene="rpmI"
                     /locus_tag="VHD88_01850"
     CDS             2456..2659
                     /gene="rpmI"
                     /locus_tag="VHD88_01850"
                     /inference="COORDINATES: protein motif:HMM:TIGR00001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HVS20557.1"
                     /translation="MPKLKTHRGAAKRFRLTASGKIKRGHSHARHILTKKTNKRKRLL
                     DIDALVADGDQKRVERMLPYGRD"
     gene            2778..3161
                     /gene="rplT"
                     /locus_tag="VHD88_01855"
     CDS             2778..3161
                     /gene="rplT"
                     /locus_tag="VHD88_01855"
                     /inference="COORDINATES: protein motif:HMM:TIGR01032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HVS20558.1"
                     /translation="MPRAKRGNKRLERRKKILKLAKGYRGTKSKLYRSAKESVERGLN
                     FAYTGRKLKKRDFRSLWIVRIGAAARLNGLNYSQFMHGLKLAGIELDRKILADFAANQ
                     PEAFADLAAQAKKALDDKPQARAAA"
     gene            3475..3894
                     /locus_tag="VHD88_01860"
     CDS             3475..3894
                     /locus_tag="VHD88_01860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20559.1"
                     /translation="MELDFKGSAGKLTVRQRDDKLVGEWSLAGESGTIELKKVAATDE
                     VSSEWDGAADANGQAFPFTLTLKLDGEKITGGSSSELGNSTITSGGFKDGNLVFVLDS
                     PNGQIAMMATLTDGKLVGDFDYAGQMQGKWVATKKKP"
     gene            3921..5021
                     /gene="pheS"
                     /locus_tag="VHD88_01865"
     CDS             3921..5021
                     /gene="pheS"
                     /locus_tag="VHD88_01865"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: protein motif:HMM:TIGR00468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009328 - phenylalanine-tRNA ligase
                     complex [Evidence IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HVS20560.1"
                     /translation="MTESETDPAQQVEAARKAFESEFERFARFTGDSAQRAHLGLKEA
                     EDEQRALAELRTRHSGKKSAIAACKKLIGRVAPEERTAFGQLVQQTESGIVQALDEVE
                     QSLKVFIETARIESESIDVTMPGRRPRSGHLHPITLMRQRIEDIFVSLGYAVEDDREI
                     ETDFYNFDALNIPLGHPARDPQDTFYTTDGFALRSQTSTVQIHAMQRRGAPVRMIAPG
                     RVFRRDTPDPTHNPMFYQVEGLCVDRGITMAHLKGTLAEFVHRLFGPETKTRFRPSYF
                     PFTEPSAEVDYSCFNCGGPGCRICKWSGWIELGGSGMVHPNVLRAASVDPEEFTGFAF
                     GLGIDRTCARIYELDDIRLLFENDVRFLEQFR"
     gene            5096..>6829
                     /gene="pheT"
                     /locus_tag="VHD88_01870"
     CDS             5096..>6829
                     /gene="pheT"
                     /locus_tag="VHD88_01870"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: protein motif:HMM:TIGR00472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009328 - phenylalanine-tRNA ligase
                     complex [Evidence IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HVS20561.1"
                     /translation="MLISYNWLRELTGTKLKPQDVRERLTNVGLAVDAVEERGEDFVL
                     DVEVASNRPDCLSHVGVARELAVIEKSQVSSLKSQVSKTEGRSIEYAAVEINDPDLCP
                     RYAVRIVRGVKIAPSPDWLAQRLETLGQRPINNVADITNYVLHEMGQPLHAFDLAKLE
                     ENRIVVRRATKGEVLKTLDGVERKLDGEMLVIADAKRAVAVAGVMGGEDTEISNTTTD
                     VLIESAYFDPASVRRTARLLGLHTEASHRFERGADIDGVLRAQERCASLICEIAGGVA
                     TEDSIDAYPNKIAQRVAGLRPERVEALTGLRVEQDEMLRILAALGFVLGKSESKQLSF
                     TIPSLRHDVAIEEDLIEEIARHTGYEKIGTALPPSTLAGEYHTTEELKRALRRALAAA
                     SFDEAINFSFTQPTDEFELIPAFAGRGPESQATLKNPIIEEASRMRQTLLLGLLNSIR
                     HNLNQGIRDVCLFEMGRVFAVSKPGELPEEREALALVATGGAMKASQVQAERDCDFYD
                     LKGALESAVEATNVPPLNFEGASVKHLRAGQSAALSIGEVGVGSIGRLAETIGTEYKF
                     KQPVFVAEIDLT"
BASE COUNT         1625 a         1715 c         2039 g         1450 t
ORIGIN      
        1 ctggatcttt ttccgggaac gaaactggga atcggaccgg cgctgctcga agatccgcgt
       61 tatggctttt tctacgatgt gattgcgccg cgacctctca ccgaagttga tcttccagta
      121 atcgagaaga agatgcgcga cattgcgaag cgcaacatgc cgtatcgccg cgatgaaatc
      181 tcgaaagctg aagcgctgcg catcttcgca gagcgtgatg agcctttgaa gtgtgaacta
      241 atcgacgaaa aagccggcga ggttgtcagt gtctattaca tcgacggttc gccgttcatc
      301 gatttctgcc tcgggcctca cgtgccgaac acgaatcggc tgcgcgcatt caagctgttg
      361 tcgctggccg gcgcgtattg gaaaggcgac gctgaacggc cgcagatgca gcgaatctac
      421 ggcacggcgt tcttcacgcc cgaagaactc gacgcgtggt taaagcaacg cgaagaggcc
      481 gagaagcgcg atcatcgccg cctcggtcgc gagcttgatc tgttttcaat tcaggagcag
      541 tacggacaag gcctcgtctt ttggcatccg aagggcggag ttatccgccg gcagatggag
      601 gattatctgc gcaacgaact gatgtcacgc ggatatgggc tggtctttac accgcacatc
      661 gcgaagcgcg atctgtggtt cgtcagcggc cacgaagaaa actacgccga tgtaatgttc
      721 tcgcccacgg agctggagga aacggagttc aggctcaagc cgatgaactg cccgttccat
      781 atcgggatct ataagtcatc gcagcattcg tatcgtgatt tgccgttgcg ctatgccgaa
      841 ctgggcacgt gttatcgtgc tgaactatcc ggcacgctgc acggtctgat gcgcgtgcgc
      901 ggcttcacgc aggacgatgc tcacattttc tgtactccag agactgtgcg tagcgagatt
      961 gtgagttgca tccagtttgc cttcgccctt ttgggtgctt tcagttttga caagttcaaa
     1021 atcgaactat cggtcaaagg caataatacg gcgaagaaat atctgggctc tgatgaagat
     1081 tgggagcgcg ccgaaagcgc tctggttcaa gctcttgaag agcaaaatct tccatatgaa
     1141 cgaatggaag atgaggcggc gttttatggc ccgaagatcg atatcaaggt ggaagatgcg
     1201 attggtcgtt tgtggcagtt gacgacgatc cagttcgact tcaatctgcc ggagcgtttc
     1261 gaactcgaat acattggcga ggataataaa cctcatcgcc cgatcatgat ccatcgcgcg
     1321 ctattcggtt cgctcgaacg tttcttcgga gtgttgatcg agcattacgc cggcgcgttt
     1381 cctatgtggc tggcgccggt gcaagttgcg ttgcttccga tcactgatcg catcaacgaa
     1441 tacgcggagc agattgcgca ggaattgcgt gccgtcggct tgcgcgtcga tgtgaacgtc
     1501 cgcagcgaca agattggcgc gaagattcgc gacgcgcaga tgcagaaagt cccgttcatg
     1561 ctcgtgctcg gcgaccgaga gatgcaggag agcacagtcg ccgtgcgcga gagatcgaaa
     1621 ggcgacatcg gcgcgatgcc gctggatgaa ttcaaacaga tggcgcggcg tttggttgaa
     1681 acgcgcgcaa ttacgaacac atagtttcag gtttcaagtt tcaggtttca tgttctgtta
     1741 gcgaacttga aacttgaaac cttgaacttg aaactcttaa ccgaggaggt gcagcaatag
     1801 caggttttcg aggccgcggt cgtccagacc atcgtcgcgc gccggccacg cgcattaacg
     1861 agcgaattcg cgtgccccag gtgcgcgtcg tgggcgagga aggcgaacaa cttggcgtga
     1921 tggatacgcg cgatgcgatt cgcaaggcgc gtgaggtcag aatggacctg gtcgaagtcg
     1981 cggccggcgc agatccgccg gtttgtcgca tcatcgactt tggcaagttt caatacgaag
     2041 ccaaaaagaa ggccaacgaa gccaagaaaa aacaggtttt cgtcacggtc aaggaagtaa
     2101 agtttcgccc gagcacggac gaacacgatt acagctatcg catgaagcac gcgcgcgagt
     2161 ggctgcagga gggcgacaag gtgaaagcga cgatctggtt tcgcggccgc gagatggccc
     2221 accgcgaact gggcgcgcgc attctggcaa agcttgagaa agatctcgcc gacattagtg
     2281 aagtggaaat gaggccaagg atggagggga accagatgtc cattttcttt ggtccgaaga
     2341 gacataaggg aagcaaaaca actgagaacg atgaacgcgg aacgatgaat acgggttctg
     2401 ctaatcccag ttcatagttc atcgttcaga gttcatggtt aagaagggag taatcatgcc
     2461 aaaactaaaa acacataggg gcgcggcgaa gcgctttcgc ttgaccgcca gcggtaagat
     2521 caagcgcgga cattcgcacg cgcgtcacat cttgacgaag aagacaaaca aacggaaacg
     2581 acttttggat atcgacgcgc tggttgccga tggcgaccag aagcgtgttg agagaatgtt
     2641 gccgtacggg agagactagg gcagggatga aggatgaggg atgaaggatg aacgaattga
     2701 gcgagggcaa gttgaggtat tgaagcaatt tatccctcat ccctccgccc tcatcccgta
     2761 taagaaggag agcaattatg ccaagagcta aacgtggaaa taagcgcctg gagcgccgca
     2821 agaagattct gaagttagca aaaggttatc gtggcacgaa gtcaaagttg tatcgttcag
     2881 cgaaagagtc ggtcgagcgt ggattgaact ttgcctatac gggaagaaaa ctaaaaaagc
     2941 gcgattttcg gtcgctgtgg atcgtgcgca tcggcgccgc ggcgcgactc aatggcttga
     3001 actattcgca gttcatgcac ggattgaagc tcgctgggat cgaactcgat cgaaagatac
     3061 ttgccgattt tgcggccaac cagcctgagg ctttcgcgga tttggcggcg caggcaaaaa
     3121 aggctctgga cgacaagccg caagcgcgcg cagccgcgta gcaccagtcg ggcaattgaa
     3181 aggaatgatg atggatttga aactcgtaac gcgatcgttc tctcgtatgc agatcgccgg
     3241 gttagctttg ctgctggcgc cgttcatcgt ctcagcgcag aacaacggca atccgagcgc
     3301 caagacaacg ccgtcactcg tcggacggta tgaaggcacc gcgaagggcc ctaatggcga
     3361 agcaaaggtg accttggaac taaaagacga tggcggaaaa ttctctggca gtctcatgtc
     3421 gccgcacggg ccattcgagg tggtgaaggg tcggctggct gaaggtgttc tgacttggaa
     3481 ttggatttca agggctcggc tggcaagctc actgttcgtc aacgggatga caagctggtt
     3541 ggcgaatggt cgcttgcagg agagtctggg accatcgagc ttaagaaagt tgcagcaacc
     3601 gatgaagttt caagcgagtg ggacggggcg gccgacgcaa atggccaggc gttccctttt
     3661 actctaactc tgaaacttga tggcgagaaa atcacgggtg gcagcagttc ggaactgggc
     3721 aactcaacga tcacgtcggg gggctttaag gatggaaacc tggttttcgt gcttgactcg
     3781 cccaacggcc agatcgcgat gatggccacg ttaacagatg gaaaactggt cggtgatttc
     3841 gattacgccg gccagatgca agggaagtgg gttgcaacaa agaagaaacc ttagttggaa
     3901 gaagacatcg agcttgttga atgactgaga gcgaaacaga tcctgcgcaa caggttgaag
     3961 ccgcacgcaa agcgttcgaa tcagagttcg agcgctttgc ccgctttacc ggcgactctg
     4021 ctcaacgtgc gcatctcggc ttgaaggaag ctgaagacga gcagcgcgcc ttggccgagt
     4081 tgcgcacccg gcattctgga aagaaaagcg cgatcgcggc ttgcaagaaa ttgattggcc
     4141 gtgtcgcgcc cgaggagcgc acagcgtttg gtcagcttgt tcagcaaacg gaaagcggga
     4201 ttgttcaggc gctcgacgaa gttgagcagt cattgaaggt cttcattgaa actgcgcgga
     4261 tcgagagcga aagcatcgac gtaaccatgc ccggtcgccg ccctcgctcg ggacacttgc
     4321 atccaatcac gctgatgcgc cagcgcatcg aagacatttt tgtttcgctc ggctacgccg
     4381 tcgaagacga tcgcgaaatc gaaactgatt tttataactt tgacgcgctg aacattccct
     4441 tgggccatcc ggcccgcgac ccacaggaca cgttctacac tactgatggt tttgcgttgc
     4501 gctcccaaac ttcgacggtg cagattcacg cgatgcaacg ccgcggagcg ccggtgcgca
     4561 tgattgcgcc gggccgcgtc tttcgccgcg acacgcccga cccaacgcac aatccaatgt
     4621 tctatcaggt cgaagggctg tgcgtcgatc gcggcatcac gatggcgcat ttgaaaggga
     4681 cgctggcgga gtttgtgcat cgtttgttcg ggccagagac aaagacgcgc ttcaggcctt
     4741 cttactttcc gttcaccgaa ccgagcgccg aggtcgatta cagttgtttc aattgcggtg
     4801 gtcccggctg tcgcatttgc aagtggtcgg gctggatcga gctgggcggt tcaggcatgg
     4861 ttcatccgaa tgtgctgcgc gcggcaagcg tcgatccaga agagtttacc gggtttgcct
     4921 tcggcctcgg catcgatcgc acctgcgcgc gaatttacga actcgacgac atacgtttgt
     4981 tgttcgagaa cgatgtgcgg ttcttggaac agtttagata gtgacaagtg acgagtgact
     5041 agtgacaaga taattgtctt gaaactcgtc actcgtcact cgtcacttgt cacttatgtt
     5101 gattagttac aactggctgc gcgaattgac cggcacgaag ctgaaacctc aagacgtgag
     5161 ggaacgactg accaatgttg gtctggccgt cgatgcggtc gaagagcgtg gcgaggattt
     5221 cgttctcgac gtcgaagtag cttcgaaccg ccctgattgt ttgtcgcatg ttggcgttgc
     5281 gcgcgagctg gcggtcatag aaaagtctca agtctcaagt ctcaagtctc aagtttcaaa
     5341 aacggaaggc aggtcgattg aatatgcggc ggtcgagatc aacgatcccg acttgtgtcc
     5401 gcgatacgct gtccgaattg ttcgcggagt gaagatcgcg ccatcgccgg attggctggc
     5461 ccagcgtttg gagacgctcg gccagcgacc catcaacaat gttgccgaca tcacgaacta
     5521 cgtgttacac gagatgggcc agccgcttca tgcgtttgat ctggcaaagc tggaagaaaa
     5581 cagaatcgtc gtgcgtcgag ccaccaaggg cgaggtgctt aagaccctcg acggcgtcga
     5641 gcgaaaactt gatggcgaga tgctggtgat tgccgacgcc aagcgagccg tcgcggttgc
     5701 gggcgtgatg ggcggcgaag ataccgaaat ttcaaacacg acgaccgatg tgttaatcga
     5761 gagcgcctac tttgatcctg cgtcagtgcg ccgcaccgcc aggctactcg gtttgcacac
     5821 agaggcttcg catcgtttcg aacgtggcgc agatatcgac ggcgtacttc gcgcgcagga
     5881 acgctgcgcc tctttgattt gcgaaatcgc cggcggcgta gcgactgagg attcaattga
     5941 cgcgtatcca aacaagatcg cacagagagt tgccggcttg cggccagaac gcgttgaagc
     6001 tttgactggt ttgcgcgttg agcaggatga aatgttacgc atcctcgcgg cgttgggttt
     6061 tgtccttgga aagagcgagt caaaacaatt aagtttcacc attccgtcgt tgcgacacga
     6121 cgtggcaatc gaggaagact tgatcgaaga aatcgcgcgg cacaccggtt atgagaagat
     6181 cggcacggcg cttcctccgt caactctggc aggcgaatac cacacgactg aagagctcaa
     6241 gcgtgcgctg cgccgggcgc tggcggcggc cagtttcgac gaggcgatca acttcagctt
     6301 cactcagccg acggacgaat tcgaattgat tcctgctttc gccggacgtg gcccggagag
     6361 ccaagccaca ctgaagaacc cgatcatcga agaagcatca cgaatgcgac agacgcttct
     6421 gctcggtctc ttgaattcaa tcaggcacaa cctcaatcaa ggaatccgcg acgtttgcct
     6481 gttcgaaatg ggtcgagtgt ttgcggtttc caagcccggc gagttgcccg aggaacgaga
     6541 agcgctcgcg ctggttgcaa ccggcggagc catgaaagcg agccaggtcc aagccgaacg
     6601 cgattgtgat ttctacgatc tgaaaggcgc gttggagtcc gctgtcgaag cgacaaatgt
     6661 gccgcctctc aattttgaag gcgcaagcgt caaacatttg cgcgccggcc agtctgcagc
     6721 gcttagcatt ggtgaggttg gcgtcggttc aatcggcaga ctcgcggaaa caatcggtac
     6781 tgaatacaag ttcaaacaac ctgtgtttgt cgcggagatc gatctgacc
//
LOCUS       DASZZE010000096         7962 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_183076, whole genome shotgun sequence.
ACCESSION   DASZZE010000096 DASZZE010000000
VERSION     DASZZE010000096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7962)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7962)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7962
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183076"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..214)
                     /locus_tag="VHD88_01875"
     CDS             complement(<1..214)
                     /locus_tag="VHD88_01875"
                     /inference="COORDINATES: protein motif:HMM:NF015279.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-loop NTPase fold protein"
                     /protein_id="HVS20562.1"
                     /translation="MNKEPLIDRVVAGEPTAVARAISKVENGAADASELMKKIFPCTG
                     RALVIGITGAPGAGKSSLVDKLAGLYR"
     gene            complement(222..1367)
                     /locus_tag="VHD88_01880"
     CDS             complement(222..1367)
                     /locus_tag="VHD88_01880"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HVS20563.1"
                     /translation="MEFELSEEQQQMKMSVREFAESEIAPHVMEWDEAQHFPIELKPK
                     LAELGLTGVIFPEAYGGAGLGYVEYATVIEELSRVDGSVGISVAAHTSLCANHIFQFG
                     SEAQKQKYLAPLATGEHLGAWGLTEPGAGSDASGTRSTAVRNGSGWVVNGSKNFVTHA
                     IHADTCVAFASSDRSKRSKGITAFIFEKGMKGFTPSKKENKLGLRASETASVVFEDCQ
                     VPDENRLGEAGMGFVNAMEILDGGRISIAALAVGIAQGAYESALRYSEERQQFGKPIN
                     EFQAIQFKLADMATQIDAARLLMYRAAWMKDQGKRTTKESSMAKLFASEVSVRVCEEA
                     IQIHGGYGYTKDYPAEKYWRDSKLCTIGEGTSEIQRMIIAREVLRQS"
     gene            complement(1474..2283)
                     /locus_tag="VHD88_01885"
     CDS             complement(1474..2283)
                     /locus_tag="VHD88_01885"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HVS20564.1"
                     /translation="MKQRLQKLIAAAGIASRRHAEELIAGGNVTVNGRVVTELGSKAD
                     PEHDHIKVRGRLINSLLKPREKVYVLLNKPKGCLTSMADPEGRPLVTELIPSSLGRVH
                     PVGRLDFNTEGLLLLTDDGEFTNYVTSARNRIEKVYEAKVKGIPPDTAINRLRRGIRL
                     DDGERAAPVEIKKMNETRTNTWFEVTLHEGRNQQIRRMFDAIGHSVIKLGRVRIGSLH
                     DAKLKPGQWRLLTQPEVKAFYRSARANNRMKSGKDAGVPRVRKPALRSRFR"
     gene            complement(2364..2699)
                     /locus_tag="VHD88_01890"
     CDS             complement(2364..2699)
                     /locus_tag="VHD88_01890"
                     /inference="COORDINATES: protein motif:HMM:NF017020.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEPN domain-containing protein"
                     /protein_id="HVS20565.1"
                     /translation="MKPITSEWVDKAEGDFATAQRELNAKDHPNYDAVCFHSQQCAEK
                     YLKAYLQEADIPFRKTHDLAELLDSALAIEPAWEPLRPDLHALSSFAVEYRYPGKTAE
                     ADEASEAFE"
     gene            complement(2680..2991)
                     /locus_tag="VHD88_01895"
     CDS             complement(2680..2991)
                     /locus_tag="VHD88_01895"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: protein motif:HMM:NF014021.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HVS20566.1"
                     /translation="MKTIRDLTSQIAREFNPERIILFGSYAYGQPGDDSDVDILVVLP
                     FKEKPVRKAIEIRNRVNPRIPLDLIVRTPEQVAQRVANNDWFMREIIEKGRTLYEADH
                     K"
     gene            complement(3019..3645)
                     /gene="scpB"
                     /locus_tag="VHD88_01900"
     CDS             complement(3019..3645)
                     /gene="scpB"
                     /locus_tag="VHD88_01900"
                     /inference="COORDINATES: protein motif:HMM:TIGR00281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HVS20567.1"
                     /translation="MSEQAKAAKLDEDEVDASETRADEEILGHREIGATELKGIAESL
                     IFVADEPLSAKTIADVLKVEREKVEKAIGDLCSEYEQRGGLQLREIAGGWQIATRPEY
                     HEQVRSYLKSRPSAKLSLASLETLAVIAYKQPVTVPEILEIRGVQSPSAIKTLLDKRL
                     IVAKGRKETVGRPMMYGTSKEFLIQFGLKDLTELPSIEDFEDLAGGAG"
     gene            complement(3678..4502)
                     /locus_tag="VHD88_01905"
     CDS             complement(3678..4502)
                     /locus_tag="VHD88_01905"
                     /inference="COORDINATES: protein motif:HMM:NF014654.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="segregation/condensation protein A"
                     /protein_id="HVS20568.1"
                     /translation="MEDTAQSEATAAPTAEAATEAAPTISVAGAQPEIVPDRDGDQLK
                     IALGDFEGPLDLLLYLIRQEQVNIYDIPIARITDEYLRYLKLMQELDLAVAGDFLVMA
                     AQLIELKSRMLLPRDPLAEDEELLDPRTELVDRLLEHEKFKAAAQMLWSRATVEQAVF
                     ARAEIETDQNNPEVAVGLFDLLTVFQKILARHKEEVLMEIEREEVSMAEMIERLRNMV
                     RSAGELNLVTFFERAQSRLELVVAFLSVLELVRMTEISLIQRETFGEITARAVGAA"
     gene            complement(4685..5674)
                     /gene="trpS"
                     /locus_tag="VHD88_01910"
     CDS             complement(4685..5674)
                     /gene="trpS"
                     /locus_tag="VHD88_01910"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004830 - tryptophan-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HVS20569.1"
                     /translation="MKRIFSGAQPTGNVHLGNYLGALRNWVALQREYESFFCIVNLHA
                     ISVAQEPKVLAAETRELARIFLAVGIDPEVSTVFVQSDVAEHAELTWLLNCVTRMSEL
                     ERMTQFKDKARKQQENVGVGLFDYPVLMASDILLYQTDLVPVGEDQKQHLELTRDIAI
                     RFNRDYGETFRVPNAFIPKVGARIMSLADPTKKMSKSDEESEAGCIMLLDDAYAVRRK
                     FKRALTDSGTEIRFDPRRPAITNLLTIYHLLTEKSQAEIEEHFSGMGYAKLKEELADV
                     TVEFLKPFQERVRGVDDGKLDEILEQGAERAEGIARATLAQAKRNMGLVGATS"
     gene            complement(5671..6375)
                     /locus_tag="VHD88_01915"
     CDS             complement(5671..6375)
                     /locus_tag="VHD88_01915"
                     /inference="COORDINATES: protein motif:HMM:NF014244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HVS20570.1"
                     /translation="MGNLDSSVIGQFILYIVALIFSLSVHESAHAWTSNYFGDDLARL
                     QGRISLNPVVHVDPIGTLLFPALSFFTGAPLIGWAKPTPVNPLRWRNKRVANFWVSIA
                     GVICNFIIAIVAGIIIRVLFSANLIDLGLSGYRLVAIPHTDSLIAEGGAQLLTTFFTL
                     NVALGVFNLIPIPPLDGSKVLQSILPPSFESGFEALERFGFILLILAMFTGVFRVIFS
                     VIMPIAIKLLLIGALK"
     gene            complement(6517..7554)
                     /locus_tag="VHD88_01920"
     CDS             complement(6517..7554)
                     /locus_tag="VHD88_01920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20571.1"
                     /translation="MSRSGQITRLDPAAGIPGGEVAIDHGEVSQDILKKLSVRFGDAQ
                     AHIIAANQKRALVLAPEASDGGEVDVSIAIGEEAKPIGTPAPFVLGKKLAGGLHPVAN
                     PAFDPADGALFVTRSGARGEHVPVSLFRIDSNGSLTEFSGDITNPTGIAFDKTGQMFV
                     TSRLDGSVSRVTELKEAVEFASELGIATGLAFNRDGEMFVGDRSGTIFRVNEIGEARA
                     WAEHEPSVSAYHLAFGPDNALYVTGPTVSSFDAITRFDEDGTASVFFRGLGRPQGLAF
                     DRDDNLYVAASLRGRRGIVRISPDAIRAELVVAGMNLVGLAFSAKGEMVVATNDAVYS
                     LPLGIYRTLLD"
     gene            complement(7705..>7962)
                     /locus_tag="VHD88_01925"
     CDS             complement(7705..>7962)
                     /locus_tag="VHD88_01925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20572.1"
                     /translation="FDVALSIDQRADLTPDFMRQLAKLAGKFCGDDLVRRNATLVELF
                     NAPQLVWLKTLRVAVKTFHSVDFRNYNMSLSDNLQFVARWL"
BASE COUNT         1712 a         2338 c         2047 g         1865 t
ORIGIN      
        1 tccgatagag cccggccagc ttgtcaacca gcgaagattt ccctgctccc ggcgctccgg
       61 taattccaat cactagcgcg cgtccggtgc acgggaaaat ctttttcatt aactccgaag
      121 catccgcggc gccgttttca actttcgaaa ttgcgcgcgc cacggccgtt ggctcgccgg
      181 cgacaacgcg gtcaatcagc ggctctttgt tcatctttca ctcatgattg tcgcaagact
      241 tcccgcgcga tgatcattcg ctgaatctca gacgtgcctt cgccgatggt gcacagtttt
      301 gaatcgcgcc aatacttctc agccggatag tcttttgtgt aaccgtagcc accgtgaatc
      361 tggatggctt cttcgcaaac ccgcacactg acttccgacg caaatagttt tgccatagaa
      421 gattctttgg tagttctctt cccctgatct ttcatccacg ccgcgcgata catcagcaag
      481 cgcgccgcat cgatttgcgt ggccatgtcg gcgagtttga attgaatcgc ctgaaactcg
      541 ttgatgggct tgccgaattg ctggcgttct tccgagtatc gcagcgctga ttcgtatgca
      601 ccctgggcga tgcccacggc cagcgccgca atcgagatgc gcccaccgtc cagaatttcc
      661 atcgcgttaa caaagcccat gcctgcttcg cccagacgat tttcgtccgg cacctgacag
      721 tcttcgaaca caacgctcgc tgtttctgaa gcgcgcaggc cgagcttatt ttctttcttc
      781 gaaggcgtaa aacccttcat gcctttttca aagatgaacg cggtgatgcc tttgctgcgc
      841 ttggagcgat cgctcgaagc aaaagccacg caagtgtcgg cgtgaattgc gtgagttaca
      901 aaattcttcg agccgttcac aacccatcca ctgccattac gaacggccgt cgaacgtgtg
      961 cccgacgcat ccgagcccgc gcccggctca gtcagccccc acgcgcccag atgctcgccg
     1021 gttgcgagcg gcgcaaggta tttctgcttt tgagcttcgc tgccaaactg aaagatgtga
     1081 ttcgcacaga gcgaagtgtg cgctgcgact gagatgccaa ccgaaccgtc aacgcgcgaa
     1141 agttcttcga tcacagtcgc gtactcgaca tagccgagcc ccgctccgcc gtacgcttcg
     1201 ggaaagatta ctcccgtcaa tccgagttcc gcgagtttgg gttttagttc gatagggaaa
     1261 tgctgcgcct cgtcccattc catcacgtgc ggcgcaatct cgctctcagc gaactcgcgc
     1321 acgctcatct tcatctgctg ctgctcttcg ctgagttcga attccatctg cctgctaaca
     1381 caaccgggag gggtcaaatc cttcttacgc tgaaacgaca ggcaagagtg cctgtcgcaa
     1441 gatgattaga ccgcagctat tgtaacccaa tgatcatcga aagcgtgatc ggagcgcagg
     1501 tttccttacc cgcggcaccc cggcatcttt gccggacttc atgcgattgt tcgcgcgcgc
     1561 acttctgtag aaagctttga cttcaggttg cgtcagcaag cgccactggc ccggctttaa
     1621 cttcgcatcg tgcaaagagc cgatgcgtac gcgtcccaat ttgatcactg aatgtccgat
     1681 agcgtcgaac atgcgccgaa tctgctggtt tcggccttcg tgcaacgtca cctcgaacca
     1741 ggtattcgta cgcgtttcgt tcatcttttt gatctcgacc ggcgcggctc gttcgccatc
     1801 gtccaacctg atgccgcgac gtaagcgatt aattgcggtg tccgggggaa ttcccttaac
     1861 cttggcttcg taaacttttt caatgcgatt gcgcgccgaa gtgacatagt tcgtgaattc
     1921 gccgtcgtcg gttagcagca ataatccttc ggtgttgaaa tccaaacgcc caaccggatg
     1981 aacgcgaccc agcgacgagg gaatcaattc agttaccaac ggacgacctt cgggatcggc
     2041 catactcgtc agacagccct tcggtttgtt aagtagcacg taaacttttt cgcgcggctt
     2101 tagcagtgaa ttgatgagcc ggccccgcac cttgatgtga tcgtgttcgg gatcggcctt
     2161 acttccaagt tcagttacga cacggccgtt gacggtgacg tttcccccgg caatcaattc
     2221 ttcggcgtga cgacgtgaag caatgccggc cgcggcgatt agtttttgca agcgttgctt
     2281 catcagccgc gtaacgcctc cttagatgta tcgtgtggcg caaagcccaa agcctgacga
     2341 atcactagcc gcaccttgcg gcattattca aaagcttcgg aggcctcgtc agcctcagcc
     2401 gtcttgccag gatagcggta ttccacggcg aaggagctca aagcatgcaa gtccggccgc
     2461 aatggctccc aggcaggttc gatcgctaac gctgagtcaa gcagctcagc aagatcatga
     2521 gtcttgcgga atggaatatc tgcttcctgt aaatatgcct tcagatattt ttcggcacat
     2581 tgttggctgt gaaagcatac ggcgtcatag ttgggatgat ctttcgcgtt caattcgcgc
     2641 tgcgccgtgg caaagtcgcc ttctgccttg tcaacccact cacttgtgat cggcttcata
     2701 cagcgtgcgg cccttctcaa tgatctcgcg cataaaccaa tcattgttgg cgacacgctg
     2761 agctacttgt tccggggttc gaacgatcaa atcgagagga attcgggggt tgactctgtt
     2821 ccggatttcg atcgccttgc gaactggttt ctctttgaac gggagcacaa caagaatgtc
     2881 gacatcggag tcgtcgccag gttgtccata ggcatacgat ccgaacaaga tgatccgttc
     2941 tggattgaac tcgcgtgcta tttgcgacgt gagatctctt attgttttca ttccaaccat
     3001 tgttaacgcc tttgcttact aacctgctcc gcccgccaag tcttcaaagt cctcgatact
     3061 tggaagttcc gttagatcct tcagtccgaa ctgaatcaga aactctttag acgtgccgta
     3121 catcatcggg cgaccgacgg tttccttgcg gcctttcgcg acgatgaggc gtttgtcgag
     3181 cagcgtcttg atcgccgatg gcgattgcac gccgcgaatc tccagaattt ccggcacggt
     3241 gacgggctgt ttgtaagcga taaccgcgag cgtttccagc gaggcgagcg aaagtttcgc
     3301 gctcggcctt gatttcaagt acgaccgcac ctgttcgtga tattcagggc gagtcgcaat
     3361 ctgccagccg ccggcaattt cgcgcagttg caatccgccg cgctgctcat attctgaaca
     3421 caagtctccg attgcttttt cgaccttctc acgttcgacc ttcagcacat cagcgattgt
     3481 tttcgcgctc agcggttcgt cggcgacgaa gatcagagat tcagcgatgc ctttcagctc
     3541 ggtggcgccg atttctcggt ggcctaagat ctcttcgtcc gcccgcgttt ccgacgcgtc
     3601 aacttcgtct tcgtccagct ttgctgcttt ggcctgttcg ctcataggtc cctgccggtg
     3661 aagttcgcat gccttgctca cgctgcgcca acagcgcgcg cagtaatctc accaaatgtc
     3721 tcgcgctgaa tcagagagat ttcagtcatt cttaccaatt caagaacgga caagaacgcg
     3781 actaccaatt cgaggcgcga ctgggcccgt tcgaagaatg tcacaaggtt cagttcgccc
     3841 gccgagcgca ccatgttgcg caagcgctcg atcatctccg ccatcgagac ttcttcgcgc
     3901 tcgatttcca tcagcacttc ttctttgtga cgggcaagaa tcttctgaaa caccgtcaac
     3961 agatcgaaca gtccgacggc cacttcggga ttgttctgat cagtctcgat ttccgcgcgc
     4021 gcgaacacag cttgttcgac cgtagcccgc gaccaaagca tctgcgccgc cgccttgaac
     4081 ttttcgtgct cgagcagacg atcgaccaac tcagtgcgcg ggtccagcag ctcttcgtct
     4141 tcggcgagag ggtctcttgg cagaagcatc cgcgacttca actcgatcaa ctgtgctgcc
     4201 atgaccagga aatcgccggc gacggcgaga tcgagttcct gcatcagctt cagatatcgc
     4261 aggtattcat cggtgatgcg cgcgatcgga atgtcgtaga tgttcacctg ctcctgccgt
     4321 atgaggtaga gcagcagatc gagcggaccc tcgaagtcgc ccagagcgat tttcaactgg
     4381 tcgccgtcgc gatcgggaac gatttcgggc tgtgcgcctg ccacgctgat cgtcggcgca
     4441 gcttcagtcg cggcctctgc ggttggcgct gccgttgctt cgctttgtgc ggtatcttcc
     4501 atcaatcccg gtttggaggc tcgactttca acttgtaagt agaaaactgg atcccttttt
     4561 tcccctctcc ctttttggga gagggttagg gagagggcgc cagtgcagca gtgtctcagt
     4621 cccactcccc agccctctcc caaagggaga gggagttttt cagcagcccc tagccgttga
     4681 actctcaact cgtcgctcca accaggccca tatttcgttt ggcctgcgcg agtgtcgctc
     4741 gagcgattcc ttccgcgcgc tcagcgccct gttccaaaat ctcgtccagt ttaccatcat
     4801 cgacgccgcg cacgcgctct tgaaacggtt tgagaaattc aaccgtcaca tccgccaatt
     4861 cctctttcag cttcgcgtag cccatgccgc tgaaatgttc ttcgatctct gcctggcttt
     4921 tctcagtgag cagatggtag atcgtcagca aattggtaat cgccggccgc ctcggatcga
     4981 agcgaatctc agtgccagag tcggtaagcg cccgcttgaa cttgcgacgc accgcgtagg
     5041 cgtcgtcgag cagcatgata catccggctt cgctctcttc gtccgacttg gacatcttct
     5101 ttgtcggatc cgcgagcgac atgatgcgcg cgccaacctt cgggatgaag gcattaggca
     5161 cgcgaaacgt ctcgccgtaa tcgcggttga aacgaatcgc tatgtcgcgc gtcaattcca
     5221 ggtgctgttt ctgatcttcg ccgacgggaa cgagatccgt ttgataaagc agaatgtccg
     5281 acgccatcaa caccgggtag tcgaacaacc caacacccac gttctcctgc tgcttgcgcg
     5341 ctttgtcttt gaactgcgtc attcgttcga gttcagacat gcgcgtgacg cagttcaaaa
     5401 gccacgtcaa ttcggcatgt tccgcgacat ctgactgaac aaacactgtg gagacttcgg
     5461 gatcgatccc gaccgctaga aagatgcggg cgagttcacg tgtctctgcg gcaagaactt
     5521 tcggctcctg tgcgacgctg atcgcgtgca ggttcacgat gcagaaaaaa ctttcgtact
     5581 cgcgttgcag cgcgacccag ttgcgcagtg ccccgagata atttcccaga tgaacgttgc
     5641 cggtaggctg ggcgccgctg aagattcgtt tcattttagg gcaccaatca ataagagttt
     5701 gattgcaatc ggcataatca cactaaagat cactctgaac acaccagtga acatagccag
     5761 tattagtaat atgaagccga accgttccag ggcctcgaac ccggattcga aactcggtgg
     5821 caaaatgctc tgtaaaactt tgctgccatc gagtggcgga attggaatga ggttaaagac
     5881 tcccagagct acattcaatg tgaagaaagt ggttagcaac tgcgctccac cctccgcgat
     5941 cagcgagtct gtgtgtggga tcgcgactag ccgataaccg ctcaggccca gatcaatgag
     6001 gttcgccgaa aaaagaacac gaatgattat tccggcgaca atagcgatga tgaagttgca
     6061 aattaccccg gcgatcgaaa cccaaaagtt cgcgactcgt ttgtttctcc aacgcaaagg
     6121 attaactggt gtcggcttcg cccagccaat caaaggcgcg ccggtgaaga aagagagggc
     6181 cggaaacaac agggtgccga tcggatccac gtgcactact gggttcaggc taattctacc
     6241 ttgcaacctc gccagatcgt caccaaagta attcgacgtc caggcgtgcg ccgactcgtg
     6301 gacagacaaa gagaagatta gcgccactat gtacagaatg aactgcccga ttacgctgct
     6361 gtccagatta cccattcgta agaattgtgc tccggattct ttcgaacttt acctatcaat
     6421 tcgttcgtga ttgcgaaagt agcatcacgg tctttagcga gtcaaagtga tcttcttgtg
     6481 cttgtggatt gcccgtcgtc gccaccagtc cgcgactcag tccagcaacg tgcggtaaat
     6541 ccccaacggc aagctgtaaa cggcgtcatt cgtcgctacg accatctcgc ctttcgcgct
     6601 gaatgccagc ccaacgagat tcattcccgc taccacaagc tccgccctga tcgcgtccgg
     6661 tgaaatgcga acgatgccac gccggccacg caacgaagcc gcgacgtaaa gattgtcatc
     6721 acgatcgaac gccagtccct gcggccgccc aagaccgcga aagaaaacgc tcgcggtccc
     6781 gtcttcgtcg aatcgtgtaa tcgcgtcaaa gctcgacacc gtcggaccgg tcacgtaaag
     6841 cgcgttgtca ggtccaaacg caaggtgata cgccgagact gaaggctcgt gctccgccca
     6901 ggctcgcgct tcgccaattt cgttaacgcg aaaaatcgtg ccgctgcgat cgccgacgaa
     6961 catctcgcca tcgcgattga atgccaagcc tgtggcgatg cctagctcgc tcgcgaattc
     7021 gacggcttcc ttcaactcag tgacccgaga gaccgagcca tcgagccgac tagtaacaaa
     7081 catctgtcca gtcttgtcaa aagcaattcc agttggattg gtgatgtcgc cggagaactc
     7141 agtcagacta ccattagaat caattcgaaa aagcgacacc ggcacgtgct cgccgcgcgc
     7201 acctgatcgc gtgacaaaga gcgcgccgtc cgcgggatcg aacgccggat tcgcaactgg
     7261 gtgaagacct cccgcgagtt tcttgccaag cacaaacggc gccggcgtgc cgatcggttt
     7321 ggcctcttcg ccgatggcaa tcgaaacatc aacctctcca ccgtccgagg cttccggcgc
     7381 cagcacaaga gcgcgctttt ggttggcggc gatgatgtga gcctgcgcgt caccaaatcg
     7441 gacgctcagt ttctttagga tgtcctggga aacttctccg tggtcgatcg ccacttcgcc
     7501 gccgggaatt ccagccgcgg gatcgagtct cgtgatttgc cctgacctgc tcatctgttt
     7561 gcgaagcgca aggctgacat ggtaacggcg ctccggtacg cttgtctaac tggctcgatg
     7621 tgcgccaggc tttagcttgt taataatagt tacgtaacgt ttagagtcgg gctaacgccc
     7681 gaccaggcgc gcggtagccc gctcctacaa ccagcgagcg acgaactgaa ggttgtcgga
     7741 caggctcatg ttataatttc ggaagtccac tgaatgaaaa gtcttcacgg caacacgcag
     7801 ggtcttaagc caaaccaatt gcggcgcatt gaaaagctct accagcgtcg cattccgccg
     7861 caccagatcg tcaccgcaga atttgcccgc cagcttagcg agttgtcgca tgaaatcagg
     7921 cgtcaaatcg gcgcgctgat cgatcgaaag ggctacgtcg aa
//
LOCUS       DASZZE010000097         9849 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_69113, whole genome shotgun sequence.
ACCESSION   DASZZE010000097 DASZZE010000000
VERSION     DASZZE010000097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9849)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9849)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9849
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69113"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(83..454)
                     /locus_tag="VHD88_01930"
     CDS             complement(83..454)
                     /locus_tag="VHD88_01930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20573.1"
                     /translation="MGFATNGSGAIFISDNDNGVVNFDLTGTLITSDGMRYRFQTGGR
                     CVSITDRNGNQILINRSSDPNTNHYETDYVDQLGRTTKVEINAPDPANSSVTLAVLVT
                     VKGYQGATHYPIDDTLVLAAG"
     gene            777..2585
                     /gene="typA"
                     /locus_tag="VHD88_01935"
     CDS             777..2585
                     /gene="typA"
                     /locus_tag="VHD88_01935"
                     /inference="COORDINATES: protein motif:HMM:TIGR01394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HVS20574.1"
                     /translation="METSKIRNIAIIAHVDHGKTTLVDAMLKQAGTYRDNETIVERVM
                     DSMDLERERGITIMAKNTSVRYGDYKINIVDTPGHADFGGEVERVLKMVDGVMLLVDA
                     AEGCLPQTRFVLRKALEAGLPAIAVVNKIDRHDARPEEVVNEIYELFLDLDATNEQIE
                     FPILYAVSRDGVAKKKLDDSSKTLKPLFDQIIETIPAPQPLRDDSLQLLVANVDYNEY
                     VGRLAIGRIFSGEITRNQEIVIAGHDGAVQKTRVKELYVFEGLKRESAESASVGEIVA
                     LAGVPDINIGETITTPDNPQPLPAIAVDEPTIAMIFSVNNSPFAGTEGQFVTSRQINE
                     RLDREVLGNVAIRVEETASPDQFKVSGRGELQLAILIEMMRREGYELQVSKPEVITRK
                     VNGELQEPIEQVVVDCPEEFIGVVTEAMGRRKGQMTKMVNHGTGRVRLEFETPSRGLI
                     GFRGEFLTETKGTGLLNTLFLRFDKWMGEMKGRGTGSLVADRMGESTTYALFNLQERG
                     SLFIRPNTKVYEGMIIGENARAVDLDVNAIKEKKLTNMRAASADEAMRLVPVKDLSLE
                     EALEFISGDELVEVTPKSIRLRKRVLKANERPKKES"
     gene            2762..5197
                     /locus_tag="VHD88_01940"
     CDS             2762..5197
                     /locus_tag="VHD88_01940"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HVS20575.1"
                     /translation="MIGQTLGNYKITHKLGAGGQGTVYKATDTKLGRTVVLKVLPAEL
                     TAKEANLKRFDREARLASSLDHPNICTIFDLDEAEGLHFIAMQHIEGRNVRQLVNGRP
                     LELESALRIAIQVTDALAAAHARGIIHRDIKSSNVMVTDAGQVKVLDFGLAKLLDETE
                     AATSGIHQTELTEVGVPYGTATYAAPEQARGDRVDARADIFSTGVLLYEMLTGTWPFR
                     GKSTVDVRHAVIHDQSETLAEARPGQTPARLQQILDRAMAKEPRDRYQKISELRDDLR
                     KVLQEVASGAQFEVAAAPPRHLAGGNPVSRAMRWLKTLTGSEPHTSSPQFTSAPVAGT
                     HETPFTTITDREKKSLAVLPFKNLNNDQASSFYEFSLADAVITELARIRSLVVRPSSV
                     MSKYQGQPTDPRDVGRELNVDAVLSAGFIHVGERFRVNAQLLDVKSGEIIWSDRVDAS
                     ANDIIAVQDEITQRIVDGLRLELSPDEQAGLAQPTTVNAEAYEEFLRGRDRFARFIFR
                     TVAASDCDAAIQHFSRAIELDPDFGLAYDGLGACHVNRVFKGLGGPDDFERAEAAFSK
                     ALSIDSNIVEARMLMVFVYLWRGQKQKAREEVARMRREAPNEAVVHFVKATLHRLDGE
                     YDRALHSYDRLVHLDPASFVVVSYNRALIFLYQGKFEDAQRELDRAASVEPNNPLLRM
                     FRALTMYYTRQVETATELLREVLDQNPNLHGVRPFLAICLSAQGKHEAARAELNDDVK
                     RNASVDADIAYAVASVYALEGQRDQAFEWLDRSTALGNENKPCFEHDPNLASLREDDR
                     FKDLIRRITHPAN"
     gene            5777..8428
                     /locus_tag="VHD88_01945"
     CDS             5777..8428
                     /locus_tag="VHD88_01945"
                     /inference="COORDINATES: protein motif:HMM:TIGR00757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rne/Rng family ribonuclease"
                     /protein_id="HVS20576.1"
                     /translation="MSRELIVSVNGREKKIAIVENERVTEFYIERGEQNQGIVGNLYK
                     GRVMRVLPGMQSAFVDIGLERDAFLYVSDFFDEEAEFERIVVDTTKKGDAATAQQAAA
                     EHIEQARVERERHIEASHERAEPLRELEAEPAAALDEPTLEGEPAGRSRGRRGGRRRG
                     RESTRPAESRVLSPESEAIETPFVSAAGSFERVSDDEERVMNGEMLKDARLQERIMDE
                     VHAAEFDLEDVPSAPVGSLLSSMTDSGSFQRVDDGDAFTENTAARTKEREAAHVRDFV
                     DEVVDESSASRSFQRISDEAEPELESKGAIDRVKSLFGLGGKKESAAASGRRRTKAAP
                     SRRSTKPEPIDASLEHEEDRLATEAVTRISDESDLPPAESVEETYPDSEVRITTGRPH
                     EEFATRRGGRRRRRPNKKAAVAGESNGANGEDTQVEAEPIEIQTQEAVEEQPAEVEQA
                     QTTAPREVRRPSERGRRGAPRRERKQPTITDLLREGQEILVQIAKEPIAKKGARITSH
                     IALPGRYLVYMPTVEHLGVSRKIDSDAERTRLRKLIQKIHADEKVTAGGFIVRTAGIG
                     ISEAELRADASYLVRAWQDIRRNAEKAKAPSLIHKDLDLVQRILRDQLSEDFTAIRID
                     SEEEYQRVVEFVNRMQPKMVKRVKLYTRDEPILEAYGVQTEIDKAIKPRVWLRSGGYL
                     VINQTEALVAIDVNTGKFVGRGATRLEDTITRTNMEAAEEIARQIRLRDLGGIIVLDL
                     IDMEERRNRQRVMTALQDALRHDKSPTKVLSFNDFGLVIMTRKRVKQSLERTLCTPCQ
                     YCQGAGLVKSPQTVCYELLEQARRLSKEEGSDGSRQAMLRVNPEIARALRGPERDVLN
                     EIEDYLGAVDISSDPRVHQEQFDFAFA"
     gene            8447..8989
                     /locus_tag="VHD88_01950"
     CDS             8447..8989
                     /locus_tag="VHD88_01950"
                     /inference="COORDINATES: protein motif:HMM:NF012401.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HVS20577.1"
                     /translation="MRFIQRACLIALMVAASCVAIVTSAQINGSLTQSSDVLLTVGGV
                     VERLTLTRADLDKFARQSVTAKGRDGKEHKYEGVAVGEILQKVGVKFGEALHQDAVAK
                     YLLAEAADGYQVVFALPEFDSPSIDRLILLADRQDGGPLPASTGPLQIIVPGDKGHGH
                     WIRQVNSLSILRAPTRKTGL"
     gene            complement(9136..9615)
                     /locus_tag="VHD88_01955"
     CDS             complement(9136..9615)
                     /locus_tag="VHD88_01955"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HVS20578.1"
                     /translation="MREPSDFLAERSDDPRIRIEQLPDCSPSFYRHLYVKVGRNYHWI
                     DRLPWTDEQIAAHLNQPEISLWLMTYDGATAGYFELRRCEDGSVEIAYFGLLPEFLGR
                     GLGKHLLTCATEQAWSDGANRVWLHTCTLDDPAAMPNYLKRGFQPFKTESYSIEMSE"
BASE COUNT         2298 a         2663 c         2862 g         2026 t
ORIGIN      
        1 agttgtcaag atcagtcaac agctaaaagt agcggctggc ctagttggaa aggtccgcga
       61 ggtcttcgat cgtgtctcca aattaccccg ccgccagcac gagcgtatcg tcaattgggt
      121 agtgcgttgc gccttggtag cccttgacgg tcacgagtac cgcaagcgtt accgacgagt
      181 tagccgggtc aggcgcgttg atttcgactt tggtggtgcg gccaagttga tcgacgtaat
      241 ccgtttcata atggtttgtg ttgggatcgc tggaccgatt aatcagaatc tgattgccgt
      301 tgcgatccgt aatcgagaca catcgccccc cagtctgaaa acgatagcgc atgccatcgc
      361 tggtaatcag tgtccctgtc aaatcaaaat tcacgacgcc attatcattg tcgctgataa
      421 aaatcgcgcc ggagccgttt gttgcaaagc ccataagcgg atcagggaag ccttcgcttg
      481 tgtgagggtt gaatagtcgc gagcggatca agttgcgctc gttattcctc taattcctct
      541 agaggcggtg gatgcaagat ttgcgattct catacgtcta aattaccgcc atctattgcc
      601 agcgtgcctc cggttgtcgc acctctagag tcctcgcctc acgaggagac cagctaaaca
      661 gcaacacact aacggagcac taccggcaac catacctgat ttgtgctttt gctcgcgggc
      721 acttattctt tctgtttgtc tttaacggca ttttctcgac aagctgatac cgacacatgg
      781 aaacaagcaa gattcgcaac atcgcaatta tcgcccatgt cgatcacggc aagaccactc
      841 tggttgatgc catgctcaag caagccggca cgtaccgtga caacgaaacc atcgtcgaac
      901 gggtgatgga ctcgatggat ttggaacgcg agcgcggcat caccatcatg gccaagaaca
      961 cttcggtgcg ttacggcgat tacaagatca atatcgtcga tacgcccggt cacgctgatt
     1021 tcggcggcga ggtcgagcgc gttttgaaaa tggtcgatgg cgtgatgttg ctggttgacg
     1081 cggccgaagg ctgcctgccg caaacgcggt ttgtgctgcg caaagctctg gaagccggcc
     1141 tgcccgcaat cgccgtcgtc aataagattg accgccatga tgcgcgtccc gaagaagtgg
     1201 tgaacgagat ttacgagtta ttcctcgacc ttgatgccac caacgagcaa attgagtttc
     1261 cgattcttta cgccgtctct cgcgatggcg tagccaagaa gaagcttgac gattcatcga
     1321 aaactctgaa gcccttgttc gatcaaatca tcgagacgat cccggcgccg caaccactac
     1381 gcgacgattc gttgcagctt ctggtggcga acgttgacta caacgaatac gtcgggcgac
     1441 tagcgattgg gcgaattttc tcgggcgaga ttacccgcaa ccaggagatc gtcatcgccg
     1501 ggcacgatgg cgccgttcaa aaaaccagag tgaaagagct ttacgttttt gagggcttga
     1561 agcgggagtc ggcggaaagc gcaagcgtag gcgaaatcgt tgctctggcg ggtgtgccgg
     1621 acatcaacat cggcgagacg atcacgactc ccgacaatcc gcagcctctg ccggcgatcg
     1681 ccgttgacga accgacgatc gcgatgatct tcagcgtcaa caactcgcca ttcgcaggaa
     1741 cagaaggaca gttcgtaacg tcgcgtcaaa ttaacgaacg acttgatcga gaagttttgg
     1801 gcaacgtcgc aatccgcgtg gaagaaaccg cttcgccgga tcaattcaaa gtatccgggc
     1861 gcggtgagct gcaactcgca atcctgatcg agatgatgcg ccgcgaaggt tacgagcttc
     1921 aggtctcaaa acccgaagtc atcacgcgca aagtgaatgg cgaattgcag gaaccgatcg
     1981 aacaagttgt tgtcgattgt cccgaagaat ttatcggcgt cgtcaccgaa gcgatgggga
     2041 ggcgcaaagg gcagatgacg aagatggtca atcacggcac gggccgcgtg cggctcgaat
     2101 tcgaaacgcc ctcgcgcggg ctgattggtt ttcgcggcga gtttctgacg gagacaaagg
     2161 gcaccggttt gctcaacact ttgttcctgc gtttcgacaa atggatgggc gagatgaaag
     2221 gccgcggcac cggctcgctg gttgcggatc gcatgggcga atccacgact tatgccctct
     2281 tcaatctgca ggaacgcggc tcgttgttca tccgtccgaa cacgaaagtc tatgaaggga
     2341 tgatcattgg cgagaacgcg cgcgccgttg accttgacgt gaacgccatc aaagagaaga
     2401 agctcacaaa catgcgcgcc gcaagtgctg atgaagcgat gcgcctggtg ccagtgaaag
     2461 atctctcgct cgaagaagca ctcgaattca tttccggcga cgaactcgtc gaagttacgc
     2521 cgaaatcaat tcgtctgcgc aagcgagttt tgaaagcgaa cgagcggccc aagaaggaaa
     2581 gctaggacat ccacggatca agcagactac ccagatcagc ttacttaatc tggaaacaca
     2641 aggtcgccat cttgttctta tctgcgtcat ttgcgtagtc tgcggaggcc caaccttaat
     2701 gaagatttga cgcctcttct cgttgcggtt cggcgtggtt cggagttaaa tactaccact
     2761 gatgatcggc cagaccctcg gcaattacaa aatcactcac aagctcggcg ccggcggaca
     2821 gggaacggtt tataaagcga ctgatacgaa gctgggccgc acggtcgtcc tcaaagttct
     2881 tccggccgaa ctcaccgcca aagaagccaa cttgaaacgc ttcgatcgtg aagcgcggct
     2941 cgcttcatcg ctggatcatc cgaacatttg caccatcttt gatctcgacg aagccgaagg
     3001 tttgcacttc atcgcgatgc agcacatcga aggacgcaac gtgcgccagc tcgtcaacgg
     3061 acgcccgctg gaattggaaa gcgctttgcg aattgcgatt caagttaccg acgcgctggc
     3121 ggcggcgcac gcgcgcggca tcattcaccg cgacatcaag tcaagcaacg tgatggtaac
     3181 cgacgccggc caggtcaagg ttctggattt tggtttggcg aagctacttg acgagacgga
     3241 agcagcgacc agcggtattc atcagacaga gttgactgag gtgggcgtgc cgtacggcac
     3301 ggcgacttac gccgcgccgg aacaggcgcg cggcgatcgc gtggatgcgc gcgcggatat
     3361 tttttcgacc ggcgttttgc tctacgaaat gctgacgggc acgtggccgt ttcgtggcaa
     3421 atcaactgtc gatgtgcgcc acgcggtgat tcacgatcag tcggagacgc tggccgaagc
     3481 gcgcccgggc caaacgccag cacgtttgca gcaaattctc gatcgcgcaa tggcgaaaga
     3541 gccgcgggat cgttatcaaa aaatttccga actgcgtgac gatctgcgca aggtcctgca
     3601 agaggtcgca tccggagcgc agtttgaagt cgccgccgcg ccgccgcgtc atctcgccgg
     3661 cggcaatccg gtttcacggg cgatgcgttg gctcaagacg ctgaccggat cagagccgca
     3721 caccagctcg ccgcaattta cttcggctcc ggtcgcgggg actcacgaga cgccattcac
     3781 caccatcacg gatcgcgaga agaaaagcct ggcagtgttg cccttcaaga accttaacaa
     3841 cgatcaggca tcgagcttct acgaattctc gctggccgac gcggtgatta ccgagctggc
     3901 gcgaattcga tcgctggtcg tgcggccgtc gtcggtgatg tcaaagtatc agggccaacc
     3961 gacggatccg cgcgacgttg gacgcgaact gaacgtcgat gccgtgctgt ccgcgggttt
     4021 catccacgtc ggcgaacgct ttcgcgttaa cgcgcaactg ctcgacgtga agagcggcga
     4081 gatcatctgg agcgatcgcg ttgatgcttc ggccaacgac atcatcgccg tgcaggacga
     4141 aatcacgcag cgcattgttg atggactgcg tctcgaactc agccccgacg agcaggccgg
     4201 tctggcgcaa ccgacgacgg tgaacgccga agcttatgaa gaattcctgc gcggtcgcga
     4261 tcgatttgcg cgcttcattt ttcgcacggt cgcagcgtca gactgcgacg cggccattca
     4321 gcattttagt cgcgcgatcg aactcgatcc tgactttggc ctcgcttatg acggtctagg
     4381 cgcgtgtcac gtcaatcgcg ttttcaaagg tctcggcgga cccgatgatt ttgagcgcgc
     4441 ggaagctgcg ttcagcaagg cgctctcgat cgattcgaat atcgtcgagg cccgcatgct
     4501 gatggtgttc gtatatctgt ggcgcggaca gaaacaaaag gcgcgcgaag aagtggcgcg
     4561 gatgcgccgc gaagcgccca acgaagctgt ggtgcatttc gtaaaggcta cgttgcaccg
     4621 gctcgacggt gaatacgacc gagccctgca cagctacgat cgtttagtgc atctcgatcc
     4681 agcttcgttc gtggtcgtca gctacaaccg cgcgctcatc tttctttacc agggcaagtt
     4741 tgaagacgct cagcgcgaac tcgatcgggc tgcttcggtc gagccgaaca acccgctgct
     4801 cagaatgttc cgtgcgctca cgatgtatta cacgcggcaa gttgagacgg ccacggaact
     4861 gctccgtgaa gtgctcgacc agaacccgaa ccttcacggc gtgcgaccgt ttctggcgat
     4921 ttgtctgagc gcgcagggaa aacacgaagc cgcgcgcgct gaactcaacg acgacgtgaa
     4981 acgaaatgct tcagtcgatg ccgacatcgc gtatgcggtc gcgtccgttt acgcgctcga
     5041 aggccagcgc gatcaggcgt tcgagtggct ggatcgctcg accgcgctcg gaaacgaaaa
     5101 caagccgtgc tttgagcacg atccgaatct ggcgtcattg cgcgaggatg atcgattcaa
     5161 agatttgatt cgccggatta cgcacccggc aaactgacgg gcgtcgtgac ttgtttggcc
     5221 tacccgctcc tgcaaggtgg tgctgtcagc catactctgc tatactgctt ttgctcaccg
     5281 cgccaggcat ccggcttggt cgaatgcacc gcaactgaag tttcaaatgc agtgataggt
     5341 ttgagcaaga ttttttttga aggctgtcga aaggacggcc attgaaatga accgcgagcc
     5401 aggttacaga gcgcgtcctt aattggctga cgctaggctc cctggcggtt gatgcaagat
     5461 ctgcacgact cgtgcggttc aacggagttc ctttttgaac agttcaggat cgtctcgcga
     5521 tgcgagagat gtcgatctaa ttgatcggca tcacgcgtgc gaaccttacg cagtcaatag
     5581 tcacccgcta tcgcaggtgg tactgacaaa ttcactggcg gcaaattctg ccggcaattt
     5641 caaacaacaa ctgagcacgg cggagcgcag gccatcatgc cggcgattac tcgtttctgc
     5701 tcattcaccg tgtgcgcgac gcgcgcccgc catcagggct tgagtgcgcg cggctcgggc
     5761 cgcagaaagt aagtcaatgt caagagagtt aattgttagt gttaatggtc gcgaaaaaaa
     5821 gattgcgatc gtggaaaacg aacgtgtcac cgagttctac atcgaacgcg gcgaacaaaa
     5881 ccagggcatc gtaggaaacc tttacaaggg tcgtgtaatg cgcgtgctgc ccggcatgca
     5941 gtcagccttt gtggacatcg gactggaacg cgacgcgttc ctttacgtct cggatttctt
     6001 cgacgaggaa gcggagttcg aacgcattgt cgtcgataca accaagaaag gcgacgctgc
     6061 aaccgcgcag caagctgcag ccgagcatat cgagcaggcc cgcgtcgaac gcgagcgcca
     6121 catcgaagcg agccatgagc gcgccgaacc gctgcgcgag ttggaagctg agcctgcggc
     6181 agcattagac gaaccaactt tggaaggaga gcccgcaggg cgcagtcgcg gacgtcgcgg
     6241 cggacgccgg cgcggtcgcg aatcgacgcg gcccgctgaa agccgcgtac tatctcctga
     6301 aagtgaggcg attgaaacac ctttcgtttc ggcggccggc tctttcgagc gcgtcagcga
     6361 cgacgaagag cgcgtcatga atggcgagat gctcaaggac gcgcggctgc aagagcgaat
     6421 catggacgaa gtgcacgcgg cggagtttga tctcgaagac gtgcccagcg cgccggttgg
     6481 ctcattgtta tcgagcatga ccgatagtgg ttcgtttcaa cgtgtcgatg atggtgacgc
     6541 cttcacggag aacactgcgg cgcggacgaa ggaacgggaa gccgctcacg ttcgcgattt
     6601 cgttgacgaa gtcgtggatg agagttcggc atcgcgttcg tttcagcgca tcagcgacga
     6661 agctgaaccc gagttggaaa gcaagggagc tatagatcgc gtcaagagtt tgttcggact
     6721 tggcggcaag aaagaatccg ccgccgcatc tggtcgccga cgaacaaagg cagcgcccag
     6781 ccgacgctcg acaaagcctg aaccaatcga cgcaagcttg gaacacgaag aagatcgttt
     6841 agctaccgag gcagtaacca ggatcagtga tgaatccgat ctgcctcctg ctgaaagcgt
     6901 cgaagaaact tatcctgact cagaagttcg gatcactacc ggccggcctc atgaagagtt
     6961 tgctacccgt cgaggcggca gacgacggcg gcgtccaaac aagaaagcgg cagtcgctgg
     7021 agaaagcaat ggcgctaatg gcgaagacac ccaagtcgaa gccgagccga tagagattca
     7081 aactcaggaa gccgttgaag aacagccggc tgaagtggag caagctcaga caaccgctcc
     7141 gcgcgaagtc cgccgcccct ccgaacgtgg acgccgcggc gcgccacgac gcgagcgcaa
     7201 gcagccgacg attacggatc tcttgcgcga aggccaggag attctggtgc aaatcgccaa
     7261 agaacccatt gccaagaaag gcgcacgcat cacttcgcat attgcgctgc ccggccgtta
     7321 cttagtttac atgccgacgg tcgaacatct gggagtctcg cgcaagatag attcggatgc
     7381 tgagcgaact cggctccgca agttgattca aaagattcat gccgacgaga aagtgaccgc
     7441 gggcggtttc attgtgcgca cggctggtat cggaatcagc gaagcagaat tgcgtgctga
     7501 tgcgagttac ctggtgcgag cgtggcagga tattcgacga aatgcagaaa aggcgaaagc
     7561 accgtcgctg attcacaagg atctggacct ggtgcaacga atcctaaggg atcagctttc
     7621 agaagacttc acggcgatca gaatcgactc ggaagaggag tatcagcgcg tcgtggaatt
     7681 cgtgaatcgg atgcagccca agatggtcaa gcgcgtaaag ctttacacgc gcgacgaacc
     7741 cattctggaa gcgtacggcg tgcagacgga gatcgataaa gcgatcaagc cgcgcgtgtg
     7801 gctaagatcg ggcggttatc tggttatcaa tcaaacggaa gcgttggtgg cgatcgacgt
     7861 caacacgggc aagttcgtag gccgcggcgc aacgcgtctg gaagacacga ttacgcggac
     7921 gaacatggaa gccgctgaag aaatcgcgcg gcagattcgc ttgcgcgatc tgggcgggat
     7981 catcgtgctc gatttgatcg acatggaaga gcgccgcaac cgccagcgcg tgatgacggc
     8041 gttgcaggac gcgttgcgac atgacaagtc gcctacgaag gttctctcat tcaacgactt
     8101 tggtctggtg atcatgacgc gcaagcgcgt caagcaatcg ctcgagcgca cgctttgcac
     8161 gccctgccag tattgccagg gagcgggcct ggtgaaatcg ccgcaaaccg tttgctacga
     8221 actcctcgaa caggcgcggc gtttgtcgaa ggaagaaggc agcgacggat cgaggcaagc
     8281 gatgctgcgc gtgaatcccg aaatcgcgcg cgcgctgcgc gggccggaac gcgatgtgct
     8341 gaacgaaatc gaggactatc tcggcgccgt tgacatcagc agcgatcctc gtgtacatca
     8401 agagcaattt gattttgcat tcgcgtaaaa ccgagacgag acccagatga gattcattca
     8461 acgcgcttgc ttaatagcat tgatggtcgc agcttcatgt gttgcaatcg tcacgtccgc
     8521 gcaaatcaat ggctcattaa ctcagtcatc tgatgtactg ttaaccgtcg gcggagtagt
     8581 cgaacgtctc acgttgacgc gagccgacct cgataagttt gcccggcaat cggtgacggc
     8641 caaaggtcgt gacggcaaag agcacaagta tgaaggcgtg gccgtcgggg aaattcttca
     8701 aaaggtcggc gtaaagttcg gcgaagcttt gcaccaggat gcggtggcta agtatttgct
     8761 ggccgaagct gccgatggtt atcaagtcgt ctttgcgctg cccgagttcg attctccgtc
     8821 gattgatcgg ctgatcctgc tcgccgatcg acaagacggc ggtcctttgc ccgcttccac
     8881 cggccccttg cagatcatcg ttcctggcga taagggccac ggccattgga ttcgtcaggt
     8941 caattctctt agcattttgc gcgccccaac gcgcaaaact gggctctgac agatcgcggc
     9001 tgtcaattct ctttttagtg atacaatacc ggcaatcggg tgtcggctga atgccctcac
     9061 cccggcaagg ccgttggaga aatcctggcc atgcgagaga gcggcaacgg ggtgaggacg
     9121 ttgccgctct tattttcatt cagacatctc aattgaataa ctctctgttt tgaaaggttg
     9181 gaatccgcgc ttgagatagt ttggcatcgc cgccggatcg tcgagcgtgc acgtgtgcag
     9241 ccacacgcga ttcgctccgt cagaccaggc ttgttccgtt gcacaggtca gcagatgctt
     9301 acccaggccg cggccaagaa attccggcaa caatccgaag taggcaattt caacagagcc
     9361 atcttcgcat cgtcgcaact cgaaatagcc cgccgtcgct ccatcgtaag tcattagcca
     9421 cagcgagatt tcaggttggt taaggtgtgc cgcaatttgt tcatcggtcc atggcaggcg
     9481 atcgatccaa tgatagttgc ggcctacttt gacgtagaga tggcgataaa acgaaggcga
     9541 acaatcgggc aattgctcga tgcgaatgcg cggatcatcg ctgcgctcag ccaggaaatc
     9601 ggaaggctcg cgcatttcga gataagtgcg cgtgacttgg acggttgaga cggccggcat
     9661 accaaaacaa aacggtctga gaaagccgcg tagcggcgaa atatttatag caatagttcc
     9721 ttcaattcaa aaaagctccg aaggagcgaa atgcgcccag ttctggcgcc cgtgaacggg
     9781 ctttttggaa tttgttggtt ggccttggct ataaatattt cgtccctctg ggacttagaa
     9841 ttctgggct
//
LOCUS       DASZZE010000098         1919 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_51159, whole genome shotgun sequence.
ACCESSION   DASZZE010000098 DASZZE010000000
VERSION     DASZZE010000098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1919)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1919)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1919
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_51159"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1287
                     /gene="amrA"
                     /locus_tag="VHD88_01960"
     CDS             <1..1287
                     /gene="amrA"
                     /locus_tag="VHD88_01960"
                     /inference="COORDINATES: protein motif:HMM:NF014899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AmmeMemoRadiSam system protein A"
                     /protein_id="HVS20579.1"
                     /translation="MVPEVGREAIAEVRSSIDAMAALTERVIESGAETVILISPHAPL
                     EPDAFVAYEGPQLYADFASFRAPTATVHAELDEELLKEITRAAAEQKFEVVRIRGDLD
                     HGTAVPLYFLQRNGWHGHVVALGYSFLSNEDHLRFGNCIRAAVDKVGRPVAFIASGDL
                     SHRLKPDAPAGYNTQAHLFDEEVVDAIRSNSTRRIVNIDQELRRTAGECGYRSMLVAI
                     GVAQELESRCEVISYEAPFGVGYLVAQLLARAQSDVSTTSDELPALARQTIETFVKEG
                     KLIPAPESPSDLLQQRAPCFVSIKTRDGDLRGCIGTIEPEKDTLAEELIANAISAAAR
                     DPRFPPIREDELPGLKYSVDVLSQPELVRLDDLDPHVYGVIVEDQSGVRRGLLLPNLE
                     GIDTAARQVEIASRKAGIPPGADVKLFRFRAARYSE"
     gene            1429..1659
                     /locus_tag="VHD88_01965"
     CDS             1429..1659
                     /locus_tag="VHD88_01965"
                     /inference="COORDINATES: protein motif:HMM:NF015947.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HVS20580.1"
                     /translation="METTATSKGQIVIPSSVRRKFGIKEGTRIQINVDDDAKEIILTP
                     ITREYVHSLRGKFKGKGLLKALMAEKKKERVL"
     gene            1659..>1919
                     /locus_tag="VHD88_01970"
     CDS             1659..>1919
                     /locus_tag="VHD88_01970"
                     /inference="COORDINATES: protein motif:HMM:NF013970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIN domain-containing protein"
                     /protein_id="HVS20581.1"
                     /translation="MPRKPKALVLDSWAALAYFEGEPSAEKIADLIADAHEHDIPLFM
                     SVVNAGEVWYILAREASISDADRAIAEIRRLRIELIDADWTLA"
BASE COUNT          436 a          543 c          553 g          387 t
ORIGIN      
        1 atggttcccg aagtcgggcg tgaggcgatc gccgaagtgc gcagctcgat cgatgcgatg
       61 gcggcgttga ctgagcgcgt gattgaaagc ggggcggaaa ctgtaattct gatctcaccg
      121 cacgcgccgc tcgagcccga cgcctttgtc gcttacgagg gcccgcagct ttatgccgac
      181 ttcgccagct ttcgcgcgcc cacagcgaca gttcacgccg agttggatga agagctcctg
      241 aaagaaatta cgcgcgccgc cgccgaacag aagttcgagg tggtgcgcat tcgcggcgat
      301 ctggatcacg gcacggccgt gccgctctat tttctacaac gcaacggttg gcacgggcac
      361 gtcgtggcgc tgggctacag ttttctttcc aacgaagatc acctccgctt tggcaattgc
      421 atccgtgcgg cagtcgataa agtagggcgg cccgttgcgt tcatcgccag cggcgatctc
      481 agccatcgct tgaaacccga cgcgcccgcc ggctacaaca cacaagcgca tctgttcgac
      541 gaagaagtcg tggacgcgat tcgcagcaac tcgacgcgtc ggatcgttaa catcgatcag
      601 gagctgcgcc gaacggcggg agagtgcggt tatcggtcca tgctggttgc gattggcgtc
      661 gcgcaagaac ttgaatcgcg ttgcgaagtg atcagttacg aagcgccttt cggtgttggt
      721 tacctggtcg cgcagttgct ggcacgcgct caatccgacg tgtcaacgac gagcgacgag
      781 ctgcccgccc tcgcgcgtca gacgatcgaa acgttcgtga aagaaggcaa actgatcccc
      841 gcgcccgaga gcccttctga tcttcttcag caacgcgcac cgtgttttgt ttccatcaag
      901 actcgcgacg gagatttgcg cggctgcatc ggcacgatcg agccagagaa agacacgctc
      961 gccgaagaat tgatcgccaa cgctatcagc gccgccgcgc gcgacccgcg gtttccgcca
     1021 atccgcgaag atgaacttcc gggattgaag tattcggtag atgtgctctc gcaacccgaa
     1081 ctggtgcgcc tcgacgatct cgatccgcac gtttacggag taatcgtcga agaccaaagc
     1141 ggagtgcgcc gaggtttact acttcctaat cttgaaggga tcgatacggc agccaggcaa
     1201 gtagagatcg cttcacgaaa agccgggatc ccgcccggcg ccgacgtcaa gctcttccgc
     1261 tttcgcgcgg cgcgatattc ggagtgatga ataccccgcc taaacgagcc gattccgccc
     1321 gaggtccgcg agactctcca tttcacacaa aaggtcgtct gtaatacatc gccctagttg
     1381 acttacattg cgccttacgt tacacttcgg gttcatcgga ggatgcaaat ggaaactaca
     1441 gcaacatcta aggggcagat cgtcatacct tcatcggtgc ggcgaaaatt cggcataaaa
     1501 gagggcaccc gcattcaaat caacgtggac gatgatgcga aggagattat tctgacgccg
     1561 atcacgcgcg aatatgttca cagtctgcga ggcaagttca aaggcaaagg attactgaaa
     1621 gcgctcatgg ctgagaaaaa gaaggagagg gttctctgat gccgcgcaag ccaaaggctt
     1681 tggtgctgga ttcatgggca gccttagcgt atttcgaagg agagccatcg gccgagaaaa
     1741 tcgcggacct tatcgcagac gctcacgagc acgatatccc tctgttcatg agcgtcgtta
     1801 atgccggaga ggtctggtac atccttgctc gcgaagcatc aataagcgat gcggatcggg
     1861 ccattgccga aataaggcga ctgcgaatcg aactcattga tgccgattgg acactcgct
//
LOCUS       DASZZE010000099         2604 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_295917, whole genome shotgun sequence.
ACCESSION   DASZZE010000099 DASZZE010000000
VERSION     DASZZE010000099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2604
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295917"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1506
                     /gene="ligA"
                     /locus_tag="VHD88_01975"
     CDS             <1..1506
                     /gene="ligA"
                     /locus_tag="VHD88_01975"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF005932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003911 - DNA ligase (NAD+) activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HVS20582.1"
                     /translation="EIEVRGEAYLARKIFERINAEREEAGEPRFANPRNAASGAIRQL
                     DPAMVAKRRLDMFAYDVLSGERKAFATHWEALDWLERAGFRVNKNRALCKSIDEVIDF
                     CNRMEAARDNLGYEIDGVVVKVNSTALQDEFGATGKAPRWAIAYKYPARQATTKVNDI
                     IVQVGRTGALTPVAVLDPVQLGGVTVSRSTLHNEDEIGRLGLRIGDWVLIERGGDVIP
                     KVLKVVESKRTGREKKFRMPTVCPVCGGRISRVEGEVLSRCVAADCSAQLIGRLLHFA
                     SRRAMRIEGLGFALADQLIAKKMVHDVADLYSLKLTDLSALERMAEKSASNVLKEIDA
                     SKSRDLWCLIYGLGIRHVGERTAGILARHFGSLDRLRHATVEELDEIHEIGLTMAQSI
                     RDWFDDAGNARLCQRLRDAGMRTEAEKSAVAIGDQKFSGKQFVLTGTLPNMTRDEARS
                     LIEARGGRVTSSVSKKTDFVVAGEEPGSKLDKANQLGVKVIDEAAFKEMLE"
     gene            1518..1946
                     /locus_tag="VHD88_01980"
     CDS             1518..1946
                     /locus_tag="VHD88_01980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20583.1"
                     /translation="MDSTQEPKLELAYTLFCDDVRLEVGNKLSYMGVFQSIVVPQLPV
                     WLPKLAVVNHWRGDGAHLSEVRILMPDRQQALVVSQPARFEITHGSADNISFFVNVTL
                     PVAGQYWVQTLVDSNLFDERALVVSDQQLIAPEEESEAVN"
     gene            complement(1975..2340)
                     /locus_tag="VHD88_01985"
     CDS             complement(1975..2340)
                     /locus_tag="VHD88_01985"
                     /inference="COORDINATES: protein motif:HMM:NF014950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HVS20584.1"
                     /translation="MSTAKAAIVESISKRRLRGLPSRMRKATPTERLENIKEMAGALL
                     EEAESLDHENALAKASATAENLNLKSSVNFFEEVRRFEMLLIGRALEVTGGNQARAAR
                     MLGLGTTTLNYKIKSYEMR"
BASE COUNT          558 a          689 c          788 g          569 t
ORIGIN      
        1 gaaatcgaag tgcgcggcga agcgtatctg gcccgcaaaa tctttgaaag aatcaatgcc
       61 gagcgggaag aagcaggcga gccgcgcttt gcgaacccgc gcaacgctgc gtccggagcg
      121 attcgccaac tcgacccggc catggtggcg aaacgccgcc tcgacatgtt tgcgtatgac
      181 gtgttgtccg gcgagcgcaa agcgttcgcg acgcactggg aggcgcttga ttggctggaa
      241 cgagctggct ttcgcgtgaa taagaatcgc gctctgtgca aatcgatcga cgaagtgatc
      301 gatttctgca accggatgga agcagcgcgt gacaatctcg gttacgagat cgatggcgta
      361 gtcgtgaaag tcaattcgac cgcgttgcag gacgaatttg gcgcgaccgg caaagcgccg
      421 cgttgggcca tcgcctacaa atatcccgcg cgacaagcca cgacaaaggt gaacgacatc
      481 atcgtgcaag ttggtcgcac cggcgcgttg acccctgtgg ccgtgctcga tcccgtgcag
      541 cttggcggcg tcaccgtctc gcgttcgacg ttgcacaacg aagatgagat tgggcgtctg
      601 ggcttgcgca tcggcgactg ggttttgatt gaaagaggcg gcgacgttat tccgaaagtt
      661 ctcaaggtcg tcgaatcaaa gcgcaccggc agagagaaga agtttcgcat gccgactgtt
      721 tgtccggtgt gcggcggacg aatctcgcgg gtggaaggtg aagtcttgtc gcgctgtgtc
      781 gccgccgatt gttcggcgca actgatcgga aggctgcttc actttgcctc acgtcgcgca
      841 atgcggatag aaggtttggg attcgcgctc gccgatcaac tgattgcgaa aaagatggtt
      901 cacgacgttg ccgacctgta tagcttgaaa ctgaccgatc tttctgcgct cgagcgcatg
      961 gccgagaaat ccgcgtcgaa cgtgctgaaa gagatcgatg cgagcaagtc gcgcgatctt
     1021 tggtgcctga tctacggcct tggcatacgc cacgtcggcg agcggacggc gggaattctc
     1081 gcgcggcatt tcggttcgct cgatcgtctg aggcatgcga ccgtcgaaga actcgacgaa
     1141 attcatgaga ttggtttgac gatggcgcaa agcatccgcg attggttcga tgacgcagga
     1201 aacgcgcgtc tctgccagcg cttgcgcgac gccggcatgc gcaccgaagc ggagaaatct
     1261 gcggtcgcaa tcggcgatca gaagttttcg ggcaagcaat tcgttttaac tggaacactg
     1321 ccgaacatga ctcgcgacga agcgcgctcg ctgattgaag cgcgcggcgg ccgcgtcacc
     1381 tcttcagtga gcaagaaaac ggacttcgtg gttgccggag aggagcccgg ctcgaaactc
     1441 gacaaagcga accagcttgg cgtgaaagta atcgacgaag ctgctttcaa agagatgttg
     1501 gagtagtatg tagcgaaatg gattcaacgc aggaaccgaa actcgaactc gcttacacgc
     1561 tcttttgcga cgacgtgcgt ctggaagtcg gcaacaagct ttcatacatg ggcgtctttc
     1621 aaagtatcgt ggtgccgcag ttgcctgtgt ggttgccgaa gcttgccgtg gtgaatcact
     1681 ggcgcggtga cggcgcacac ctctccgaag tgcgaatcct gatgccggat cgtcagcaag
     1741 cgctggtcgt ttcgcaaccc gcgcgcttcg agatcacgca cggttcggcg gacaacatta
     1801 gtttcttcgt gaacgtgact ctgccggtgg cgggtcagta ttgggtgcag accctggtgg
     1861 attccaacct tttcgatgaa cgcgcgctgg tcgtttccga tcagcagttg atcgccccgg
     1921 aagaagagtc ggaagcggta aactgattgc gaggcgcggc tcgcgttcaa tccctcaccg
     1981 catctcgtat gacttaatct tgtagttgag tgtggttgtg cccaggccca gcattcgcgc
     2041 ggcgcgtgct tgattgccgc cggtgacttc gagggcgcgc ccgatcaaga gcatctcaaa
     2101 tcgccgaact tcttcgaaga aattcacgct ggatttcaag ttaagattct cggcagtcgc
     2161 cgaggctttc gccaaagcgt tttcgtggtc gagcgattcg gcctcttcga gcagcgcgcc
     2221 ggccatctcc ttaatattct ccagccgctc agtcggcgtc gcctttcgca tgcgcgacgg
     2281 cagaccgcgc agtcggcgct tcgaaattga ttcaacgatt gcagcttttg cagtgctcat
     2341 catttatgcc cccgagagta ctcgttatgt taagacgatg ttaacgccag acaattaaca
     2401 gattggccgg cattgaacgt aaagacgccg caacaccggg tcaggttcca agtttttcga
     2461 gccgcgcgtc ggcatgaaag aactgcgttt gatgcattac tcgcggtttg cgctggcgaa
     2521 gactatcggc gggagtattt ccttgaagtt aacgaaaacg aagagactca tcgcttgttc
     2581 aatgatttag tcttggcggc tagg
//
LOCUS       DASZZE010000100         1671 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_312726, whole genome shotgun sequence.
ACCESSION   DASZZE010000100 DASZZE010000000
VERSION     DASZZE010000100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1671
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_312726"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1671)
                     /locus_tag="VHD88_01990"
     CDS             complement(<1..>1671)
                     /locus_tag="VHD88_01990"
                     /inference="COORDINATES: protein motif:HMM:NF012880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016624 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, disulfide as
                     acceptor [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HVS20585.1"
                     /translation="ILQRAYCGKVGTEYRHIQSKEEKLWLREQIRREFVQPEPIEVEI
                     KKRILWKLISAEQFERFLNTKFLGQKRFSIEGCETIIPLLDQLIERAGDLGVADIKMG
                     MAHRGRLNVLANVIGHFCERIFTAFEGSVHPSFPADEGDVKYHQGAEGQRETANGNKV
                     HLTLSPNPSHLEAVDPVVEGMTRATQDAMMEHADLSRDEVMNHAMPVLLHGDAAFAGQ
                     GIVMETLQLAQLRGYRTGGTIHIIINNQIGFTTSPEAGRSSIYSTDVARITQSPIFHI
                     NGDDPEAAYRTLRIALDYRQKYKKDVVLDVVGFRRLGHNETDEPSYTQPLMYSRVKAH
                     TGVRTLYAKRLVREGVIDEAGVNQLIEERIRRYEDALARAKEIAATQKSPEAVPPQTT
                     ELDGSEIVDTGVDVDLVKSIARQISVVPEGFNLNPKMVSQLARRAKMGEGALPVDWAF
                     AEAIAFGSLALEGTRVRLSGQDSGRGTFSQRHAVLYDTQTGQAWMPLSELRSEGSPRG
                     RFEVFDSSLSEAGVLGFEYGYSVVAADALVMWEAQFGDFNNVAQSIID"
BASE COUNT          329 a          496 c          468 g          378 t
ORIGIN      
        1 tgatcgatga tcgactgggc gacattattg aaatcgccga attgcgcttc ccacatcacc
       61 agcgcgtccg cggcgaccac cgagtaaccg tattcgaagc cgagcacgcc cgcttcggaa
      121 agcgagctgt cgaaaacttc aaagcgtcct cgcggagaac cttccgaacg caattcagaa
      181 agcggcatcc atgcctgacc ggtctgcgtg tcgtacaaaa ccgcgtgacg ttggctgaag
      241 gtaccgcggc cggaatcctg tccacttaaa cgcacgcgcg tgccttcgag tgccagcgag
      301 ccgaacgcga ttgcctctgc gaacgcccag tccacaggta aggcgccttc gcccatcttc
      361 gcgcgccgcg ccagttgact taccattttc ggattcagat tgaacccttc gggaaccact
      421 gaaatctggc gcgcgatact cttaaccagg tccacatcga cgccggtatc gactatctct
      481 gaaccgtcaa gttccgttgt ttgtggcggc accgcttccg gggatttttg cgttgccgcg
      541 atctccttgg cgcgggccaa cgcatcttcg tagcgacgga tgcgctcttc gatcagttga
      601 ttcactccgg cttcgtcgat cacgccttcc cgcacgagtc gctttgcata caacgttcgc
      661 acgccggtat gggccttcac ccggctgtac atcagcggct gtgtgtaact tggctcgtca
      721 gtttcgttgt gtcccagacg gcgaaagccg accacgtcca gcacgacgtc cttcttgtac
      781 ttctgccggt agtcgagcgc gatgcgcaga gttcgatatg cggcttccgg atcatcgccg
      841 ttgatgtgaa agatcggcga ctgggttatg cgcgcgacgt cggtggaata gattgacgag
      901 cggccggctt ccggcgaggt agtaaagccg atctggttat tgatgatgat gtgaatggtg
      961 ccgcccgtgc gatagccgcg caactgcgcg agctggagcg tctccatcac aatgccctgg
     1021 ccggcaaatg cggcgtcgcc gtgcaacagc actggcatcg catgattcat cacttcatcg
     1081 cgtgaaagat cggcatgctc catcatcgcg tcctgcgtgg cgcgggtcat accctcgacg
     1141 accggatcga cggcttcaag atgactcgga ttcggcgaga gagtgagatg gactttgttg
     1201 ccgttggcag tttcgcgttg gccttccgcg ccctggtgat atttcacgtc gccctcgtcc
     1261 gctggaaacg acggatgtac cgagccttcg aaagccgtga agatgcgttc gcagaaatgt
     1321 ccgatgacgt tcgccaggac attcaaacgg ccccggtggg ccatgcccat cttaatgtct
     1381 gcgacaccga gatcaccggc gcgctcgatc aactgatcga gcagcggaat aattgtctcg
     1441 cagccttcaa tcgaaaaacg tttttggccc aggaatttcg tgttcaagaa gcgttcgaat
     1501 tgctcggcgg aaattaattt ccagaggatt cgtttcttga tctccacctc gatcggctca
     1561 ggctgaacga actcgcgccg aatctgctcg cgcagccaga gcttttcttc cttgctctga
     1621 atgtgccggt actcggtgcc gactttgccg cagtaggcac gttgcaggat g
//
LOCUS       DASZZE010000101         6034 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_183374, whole genome shotgun sequence.
ACCESSION   DASZZE010000101 DASZZE010000000
VERSION     DASZZE010000101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6034)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6034)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6034
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183374"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1222
                     /locus_tag="VHD88_01995"
     CDS             <1..1222
                     /locus_tag="VHD88_01995"
                     /inference="COORDINATES: protein motif:HMM:NF013126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HVS20586.1"
                     /translation="AQHAGVIATAKHFPGHGDTATDSHRGLPEIDVTRERLNSVELVP
                     FRAAVDAGVGAVMDGHIGLPLIDPTAITPLPREVKLKPTDTDEAGEIVVEKGTMPTTL
                     SPVMNGILRRDLKFDGLIVTDAMSMSGLTLYFTQEEASVRAIEAGADLLLKPADPDAA
                     FRGVRDAVKKGRLTEQRIDESVRKILSAKYDLGLTQQRITSLDEIDRVVASKKAVELA
                     AEIAEHAITLVRNDAKLLPINLPPNARVFNLAITNGDDRLFIAQPFTSAMARGGRKLD
                     TIVLDDRSSDSEVNKALDLAKNADVVIASMYGRVRTGQARSVALPEPGAKALEKLIDR
                     QAPLIGISFGNPYLLGSFPKLQMYVVAYGDMPSLQEATARAILGQIDLTGRLPISLPG
                     LYPRGTGIQLKARH"
     gene            1229..3700
                     /locus_tag="VHD88_02000"
     CDS             1229..3700
                     /locus_tag="VHD88_02000"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033922 - peptidoglycan
                     beta-N-acetylmuramidase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exo-beta-N-acetylmuramidase NamZ
                     domain-containing protein"
                     /protein_id="HVS20587.1"
                     /translation="MAAKNARLIIALALLLARPIAAQLPNASPITVGISTERLARMDG
                     VIQQSIDRHELPGAVVLVARHGRVVWRKAYGARAVEPQREAMTTNTIFDLASLTKIVA
                     TATSIMILVERGEMRLGEPVVKFIPEMKGDGRDAITIEQLLTHTAGFAPDFDLRERWG
                     GYDEAMKRLYREPLRTQPGARFVYSDINYIALGEVVHRVSGQTLDEFARRNIFAPLGL
                     RDTGFRPDARLRARIAPTEKRRGQMNYLGDTGANAGSEGEQWLRGQVHDPTSFRMGGV
                     AGHAGLFSTADDLAVYCQMILNGGAYNDVRILSPLSVATMTRPRAVSEDGSARGLGWD
                     IATSFSSNKGDLFPLGSFGHTGFTGTSIWIDPASDSFVIFLSNRVHPDGKGDVGPLRG
                     RVASIVASSITDTTVAKAREEAANAATELLASVARLNSNGARAANATGNSNTVADAQV
                     LTGIDVLERDGFKQLAGMRIGLVTNQTGRDRSGRQTIDVLSKAPNVKLVALFSPEHGI
                     RGVADERVSDMKDEQTGLPIYSLYGESRRPKAEQVKDIDALVYDIQDVGARFYTFITT
                     LGYVMEEAAKAKLPVFVLDRPNPINGVDVEGPIADADKLSFIAYHTIPVRHGLTVGEL
                     ARLYNEERHIGCDVRVIKMESWRRAMWFDSTGLTWVNPSPNMRSLTEAALYPGVGLLE
                     ATNISVGRGTDTPFEVIGAPWLDGQKLASYLNARRIAGVRFVPVRFTPKSSVFKNGDC
                     GGVNIVITDRSKFQSVFTGVEIAVALHRLFPADWKIDGYSHLLVNSDALERLKRGDSA
                     EELARSWATTLENFRRARAKYLLYE"
     gene            3770..4027
                     /locus_tag="VHD88_02005"
     CDS             3770..4027
                     /locus_tag="VHD88_02005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20588.1"
                     /translation="MITMPKELQEAVRASNGEPERVADLETNQEYIILPAKAYDHAWR
                     LFYDDNPLTSDERRNLLIKAGLRAGWGDPEMDVYNELDPRR"
     gene            complement(4335..4742)
                     /locus_tag="VHD88_02010"
     CDS             complement(4335..4742)
                     /locus_tag="VHD88_02010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF433 domain-containing protein"
                     /protein_id="HVS20589.1"
                     /translation="MSAHPITQGCRGFVVAARLSKEHEHRSKGYHKLGLDVDEILEGL
                     PQLTPAQIYEALSYYHDNPAEIERDIEEGQVERLVERYGLKVLDNGRTRWRIVNPESS
                     LFIRFYCIHWALGGDTLWNSQHGLEAGINLLYR"
     gene            complement(5470..>6034)
                     /locus_tag="VHD88_02015"
     CDS             complement(5470..>6034)
                     /locus_tag="VHD88_02015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20590.1"
                     /translation="GKGKRFLNSSHGVMDQLLGGWSINGIFTYMSGEPFSVRSGALTA
                     NNSHQSRAVLLDPTLRAQLQNVPNVIGPVLFKDASKFAIPPPGSNGDGRNIFTAPHYW
                     NLDLGFIKVFQLTERFKLQARMEMFNALNHPNFDNPRDASVGSPSILSSVFAQTCCVT
                     VAPVGAQSVLPLGESPRVIQFAMKLQF"
BASE COUNT         1370 a         1680 c         1693 g         1291 t
ORIGIN      
        1 cgcgcagcac gcgggcgtga tcgccacggc caaacatttt cccggccacg gagacacggc
       61 caccgattct caccggggcc tgccggaaat tgatgtcacg cgcgagcgtc tgaattcggt
      121 tgaactggtc cccttccgcg ccgcggttga tgccggcgtg ggcgccgtga tggacggcca
      181 catcggcttg cctttgatcg atccgacggc aatcacgccg ctgccgcgcg aggttaaact
      241 caagccgact gacactgacg aggccggcga aatcgtggtc gagaaaggaa cgatgccgac
      301 cactctatcg ccggtgatga acggaatctt gcggcgcgat ctcaaatttg acgggttgat
      361 cgtaaccgac gcgatgagca tgagtggctt gacgctttac tttactcagg aggaggcttc
      421 ggtgcgcgcg attgaggcgg gcgccgatct gctgctgaaa ccagccgatc ctgatgcggc
      481 gtttcgcggc gtgcgcgacg ccgtgaagaa aggaaggttg acggaacagc gcatagacga
      541 gtccgtgcgc aagattctgt cggctaagta cgatcttggt ctgacacagc aacgcatcac
      601 ttcgcttgac gaaatcgatc gcgtcgtcgc gagtaagaaa gccgtggaac ttgccgctga
      661 aatcgctgag cacgccatca ccctggtgcg caacgacgcg aagcttctgc cgataaatct
      721 tccgccaaac gctcgagtct tcaatctggc gatcacaaac ggcgacgatc gtttgttcat
      781 agctcagcct ttcacctcag cgatggcgcg cggtggtcgt aagctggaca cgatcgtgct
      841 tgacgatcgt tcctctgact cggaagttaa taaggcgctc gaccttgcga aaaatgcaga
      901 tgtcgtaatc gcatccatgt acggccgcgt ccgcacggga caagcgcgca gtgtggcttt
      961 gcctgaacct ggcgcgaagg ctttggaaaa actgatcgat cgccaagcgc cactgatcgg
     1021 aatcagcttt ggcaatccct acttgttggg aagttttccg aagctgcaaa tgtacgtcgt
     1081 tgcgtatggc gacatgccga gcttgcagga agccaccgcg agggcaatct tggggcaaat
     1141 cgatctcact ggtcgcttgc cgatttcgct gccgggtctg tatcctcgcg gcacgggaat
     1201 ccagttgaaa gcccgccact aaatataaat ggccgccaag aatgccaggc tcatcatcgc
     1261 gctcgctctt ctgctagcgc gtccgatcgc tgcccaactt ccaaacgctt ctcccatcac
     1321 cgtcggcatc tctaccgaac gtctggcccg gatggacggc gtcattcaac aatcaatcga
     1381 caggcatgag ctgccgggcg ccgtcgtact cgtcgctcgt cacggccgcg tcgtctggcg
     1441 caaggcgtac ggcgcgcgcg cggtcgagcc ccaacgcgaa gcaatgacca ccaacacgat
     1501 ctttgacctt gccagtctga cgaagatcgt agcaaccgca accagcatca tgattctggt
     1561 tgagcggggc gaaatgcgcc tcggcgagcc agttgtgaaa ttcattcctg agatgaaagg
     1621 cgacggccga gacgcgatca cgattgagca attgctgacg cacaccgcgg gctttgctcc
     1681 cgatttcgat ctgagagagc gatggggcgg atacgacgaa gcgatgaagc gtttgtatcg
     1741 cgagccgctc cgcactcaac ccggcgcgcg ctttgtttac agcgacatca attacatcgc
     1801 gctcggagag gtcgttcatc gcgtgagcgg acaaacgctc gatgaatttg cgcgccggaa
     1861 tatttttgcg ccgctcggat tgcgcgacac gggctttcgt cccgacgcaa gactaagagc
     1921 gcgtatcgcg ccgactgaaa agcggcgcgg gcagatgaat tatctcggcg atacaggagc
     1981 aaatgccggg tcggaaggcg agcaatggct gcgcggtcag gttcacgatc caacttcgtt
     2041 tcgcatgggc ggagtcgcgg gccacgccgg tctgttttca actgccgacg atctcgcggt
     2101 ttattgccag atgattttga atggtggcgc ttacaacgac gtgcgcattc tcagcccgtt
     2161 gagcgtagcc acgatgactc ggccgcgagc ggtcagcgaa gacggctcgg cgcgcggtct
     2221 cggttgggac atcgcgacga gtttttcgtc gaacaaaggc gatctgtttc cgctcggctc
     2281 gttcggccac acaggtttta ctggcacatc gatctggatc gatcccgcca gcgattcgtt
     2341 cgtcatcttc ctcagcaatc gcgttcaccc cgacggcaaa ggagacgtcg gaccattgcg
     2401 cggacgcgtc gcgtcgatag tcgcgagttc gatcactgac acaaccgtcg ctaaagcgcg
     2461 cgaggaagcc gcgaacgctg cgactgaact gctcgctagc gtagcgcgct tgaactcaaa
     2521 cggcgcgcgt gccgcaaacg caactggcaa cagcaacacc gtcgctgatg cacaggttct
     2581 gaccggcatc gatgtgctgg agcgcgacgg cttcaaacaa ctcgctggga tgcgaatcgg
     2641 tttagtgacg aatcagaccg gacgcgatcg cagcggccgc caaacgattg acgttttgag
     2701 caaagcgccg aacgtcaaac tcgtcgcgct cttttcgcca gagcacggca ttcgcggcgt
     2761 agcggacgaa agagtttcag atatgaagga cgagcaaact ggtttaccga tttattctct
     2821 ttacggcgaa tcgcgccggc caaaagctga gcaggtgaaa gatatcgacg cgctcgttta
     2881 cgacattcag gacgtaggcg cgcgcttcta cacctttatc acgactctgg gttatgtgat
     2941 ggaagaagca gcgaaagcca agctgccggt gtttgttctt gatcgaccaa acccaattaa
     3001 cggcgtcgat gttgaagggc cgattgccga tgcagacaaa ctttcattca tcgcttatca
     3061 cacgattcca gtgcgtcatg gactgacagt tggcgagctg gcccgactgt acaacgaaga
     3121 gcgtcacatc ggttgcgacg tgcgcgtaat caaaatggaa agctggcggc gcgcgatgtg
     3181 gttcgattcg actggtctta cgtgggtgaa tccttcgccg aacatgcgca gcctgaccga
     3241 agccgcgctc tatcccggcg ttggcctgct ggaagcaaca aacatttcgg taggccgcgg
     3301 cacagacacg ccgttcgagg taatcggcgc gccgtggctc gatggccaga agctcgcaag
     3361 ctatctgaat gcgcgaagga tcgccggcgt ccgtttcgtg cccgttcgtt tcacgccaaa
     3421 gtcatcagtc tttaagaatg gagactgtgg tggcgtcaac atcgtgatta ccgatcgctc
     3481 gaagtttcaa tcggtcttca ccggcgtcga aatcgcggtt gcattgcatc gattgtttcc
     3541 cgccgattgg aagatcgacg gctactcgca tctgctggta aatagtgacg cgctcgaacg
     3601 attgaagcgc ggcgattcag cagaagaact cgctcgctcg tgggcaacga cactcgagaa
     3661 ctttcgccgc gcgcgcgcga agtatttact gtatgagtaa tagttatgag cgctttccct
     3721 tcttgctact tcccagttgc gctgcgataa tctgggcaga ggaacaatca tgatcacgat
     3781 gcccaaagaa cttcaagagg ctgttcgcgc atctaatggc gaacccgaac gtgtcgctga
     3841 cctcgaaacc aatcaggaat acatcatttt gccagcgaaa gcgtacgatc acgcctggag
     3901 attattctat gacgacaatc cgttgacgag cgatgagagg cgaaatttgt tgattaaggc
     3961 gggcctgcgc gccggttggg gcgatccgga gatggacgtt tacaatgagc ttgatccccg
     4021 cagataatca tgaatgtccg ccgtggcgac attgtgcttg tggatttccc gtacagtgac
     4081 caaacaggga gcaaggtgcg tcctgccctt gtggtgcaat cggacgtatg gaaccagaca
     4141 ctagacgaca ccattctcgc gcttataaca agcagtcatc ggcgtagggt tggcgcgaca
     4201 acgcagttct ctattgatat ttcgacttcc gagggacagc ggtcgggact gaggctcaac
     4261 tcagttttcc aatgcgaaaa cctgatcacc atgaccaagc attgatcctt cgggtgttgg
     4321 gccgcctatc ggtttcagcg atacagcaga ttgatgcctg cctcaaggcc gtgctgggaa
     4381 ttccatagcg tatcgccgcc gagcgcccag tggatgcagt aaaagcgaat aaaaaggctt
     4441 gattcagggt tcactatcct ccaccgggtg cgcccattgt ccaaaacttt tagcccgtag
     4501 cgttcgacca agcgctcaac ctgtccctct tcaatgtctc gctcaatctc tgccggattg
     4561 tcatggtagt agctgagagc ttcgtagatt tgggcaggcg tcaactgggg caaaccttca
     4621 agtatctcgt ccacatcgag ccccaacttg tgatagcctt ttgaccggtg ttcgtgttcc
     4681 tttgataatc gggcggccac cacaaatccc cggcaacctt gtgtgatcgg atgagcgctc
     4741 atcaagacct cctgacatat ccaacgcaga actttaacaa gtgaccttcc tgagagcaac
     4801 ttctgcgaga cgattgaagc gcggggaatc gccggaagag atcgcgcgct cgtggttgac
     4861 tgcgctcgaa aacgtccgtc gcgcccgcgc ccgcgtctta atctaccgat gaggaagcct
     4921 ggaacccgcg tgattgccgc gaatcaaagc gttctatttg ctgctgatgc tgaatgaggt
     4981 gggatcaatc tttatagacc agatagacca gcgcttttcg aggccgtgtc aaaactcgtg
     5041 atgtgtggtt aaccaagtgc ttttgaaccg cagcggacgc cgagggaggc gccgagggac
     5101 gcaaagtacg ccttctctgc gaccttcgcg aaaaactccg cgacctctgc ggttagcttt
     5161 atctatttgt ctccactcaa cgaggtttga cacagcactt ttagcttcca atcgactgct
     5221 ttagcatcat ggctaaagcc ttcatgaaca agcccgttca aacgggccac ggaatttttt
     5281 gcgcgcccca acccggccgt caaaacggcc ggtctagtaa ccctcacgag cgagccgcgt
     5341 gaacgcggct agaattactc gactgtttct gggcagatcc aaaactcaag aatccaagca
     5401 gcagaaacaa aaacagcgag acatctttgg gatgcctcgc tgttcctttc attcaatcat
     5461 tcaaaccggc tagaactgaa gcttcatagc gaattgaatg acgcgtggag attcacccag
     5521 tggcagaact gactgtgcgc ccacaggtgc taccgtcacg cagcaagtct gcgcaaatac
     5581 ggaggacaga atgctgggcg atccgacaga agcatcccgt ggattatcga aattcggatg
     5641 gtttagcgca ttgaacatct ccatccgcgc ctgcaacttg aaccgctcgg taagctgaaa
     5701 taccttgatg aatccaagat ccagattcca gtagtgaggg gcggtaaaga tgttgcggcc
     5761 atccccattt gagcccggcg gaggaatcgc gaatttgctc gcatccttga acaaaaccgg
     5821 cccgataacg ttgggaacgt tttgcagttg ggcccggagc gtcggatcga gcagtacagc
     5881 gcgagactga tgagaattat tcgctgtcaa agcgccgcta cgaacgctaa acggttcacc
     5941 tgacatataa gtgaaaatcc cattgatgga ccacccgcca agcaattggt ccataactcc
     6001 gtgggatgag ttcaggaatc gtttcccttt tccg
//
LOCUS       DASZZE010000102         3279 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_19568, whole genome shotgun sequence.
ACCESSION   DASZZE010000102 DASZZE010000000
VERSION     DASZZE010000102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3279)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3279)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3279
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19568"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..457
                     /locus_tag="VHD88_02020"
     CDS             <1..457
                     /locus_tag="VHD88_02020"
                     /inference="COORDINATES: protein motif:HMM:NF012662.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20591.1"
                     /translation="AERTGVPLIQQKQGTDPAAVLFDSMKAAKARGSDVLIVDTAGRL
                     HNKSNLMAELEKMKRVAGREVVGAPHETLLVVDAVTGQNGLEQARQFLKIAGVTGIVL
                     TKLDGTAKGGIAVAIAKELGLPIRYVGIGEKVDDLVVFDPEQYVNSLFN"
     gene            480..1223
                     /locus_tag="VHD88_02025"
     CDS             480..1223
                     /locus_tag="VHD88_02025"
                     /inference="COORDINATES: protein motif:HMM:NF017885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ImmA/IrrE family metallo-endopeptidase"
                     /protein_id="HVS20592.1"
                     /translation="MKQLLLPPTEKRKQFELRALGLRDFAGVAGDQALDPFALAQFAK
                     LMVVDFDQIEGLSLQSRAHLLGDAADEWSGGACSQPLPNGWRIVILNPAHGLHRNRAT
                     LMEEVAHVFLGHKANRLAAITDDTSPSPLGRGSRGRVTGDASSPLPQPLSQRRGAKEE
                     SSDATKQSHGRMLTRDYNAVDEEAAYAIGAAALVPYAALRRLVLEGRTADEIARRFRV
                     SRQLTEYRIKVTHLWAEYKRASASRTQHV"
     gene            1228..1692
                     /locus_tag="VHD88_02030"
     CDS             1228..1692
                     /locus_tag="VHD88_02030"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HVS20593.1"
                     /translation="MLGAAAEGRVNEDEEEGAQLVAITPYLYYEDVGGALKFLAKAFG
                     FRKFGAQVLGPDRKINHAAMKLGDDLIMMGRPPSGYRNPKRLGQATQSLYINVSDVDK
                     HFERAKKAGATILEEPGDTEYGHRRYGAEDPEGHQWYFAQEIHRAKSKRKTR"
     gene            2006..>3279
                     /locus_tag="VHD88_02035"
     CDS             2006..>3279
                     /locus_tag="VHD88_02035"
                     /inference="COORDINATES: protein motif:HMM:NF018884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing SpoIIE family protein
                     phosphatase"
                     /protein_id="HVS20594.1"
                     /translation="MQKAEAGLSTIDKLRMLLDITKKISRSLDLNEVLNLVMETLDSL
                     IPYDAAGIYLVKCSRPVTELDGVRDETCVFHTEAVRGYDIADLQELRIKMGEGLIGHV
                     AVSGKPFISLDVRKEPRYINARARTRSEMVAPIISNNEVIGVFDLESDELNAYSKDDL
                     DVLMMLASQVAIIIEKVMLHEQLIEKQRLQTQLEIARQVQLQLLPPRDPQLEGFDISA
                     YNFPTEEVSGDYYDWTRVFEDQIGIVIADVSGKGVPAALLMAFLRASLRAASHIGYAP
                     HVSMSKVNYLLWESIERNQFVTAFYGVLDATNRTLAYSNAGHNPPLLMDTDGTAHFEE
                     RGGVPLGMFRDSRYYEYYATIDPGQVLVLYTDGVTEAENPALEEYGRERLAEAVRRCR
                     NLGAREMIDFIHRDVIDWTEGLGATDDVTFFIV"
BASE COUNT          745 a          873 c          987 g          674 t
ORIGIN      
        1 ggctgagcgc acgggcgtgc ccttgattca acagaagcag ggaactgatc cggcggcggt
       61 gctgttcgat tcgatgaagg cggcgaaggc ccgcggctcg gacgtgctca tcgttgacac
      121 ggcgggccgc ttgcacaaca agtcgaatct gatggcggag ctggaaaaga tgaaacgtgt
      181 tgccgggcgc gaagttgttg gtgcgccgca cgagacttta ctcgtggtcg atgcggtgac
      241 tgggcagaac ggactcgaac aggcgcggca gtttttgaaa attgcgggcg tgaccgggat
      301 tgttttgacg aagcttgacg gcacggcgaa aggcggcatc gcggtggcca tcgcgaaaga
      361 gttggggcta ccgattcgct acgtcggcat cggcgaaaag gttgacgacc tcgtcgtttt
      421 cgatcctgaa cagtacgtga atagcctgtt caactaggtc tgaaagagca tggaagatcg
      481 tgaagcaact acttctgcct cccacggaaa agcgaaaaca atttgagctg cgcgcgctgg
      541 gtctgcgtga ttttgccggc gtcgccggcg accaagcgct cgatccgttt gcgctggcgc
      601 agtttgcgaa attgatggtt gttgatttcg atcagatcga aggtctgtca ctgcaatcgc
      661 gcgcacactt actcggcgat gcggcagatg aatggtcggg cggcgcatgt tcgcaaccgc
      721 tgccgaacgg ttggcgcatc gtgattctga atcccgcgca cggactgcat cgcaatcgcg
      781 ccacgctgat ggaggaagtt gcgcacgtct ttcttggcca caaagcaaat cgcctggctg
      841 caatcacgga tgacacttcc ccctccccgc tggggagggg atcaaggggt agggttactg
      901 gagacgcgtc aagccctctc ccccaacccc tctcccagag gagaggggcg aaggaggaat
      961 catcggacgc aacaaagcaa tcccacgggc gaatgctgac ccgcgactac aacgcggtag
     1021 atgaagaggc ggcttatgcg attggcgcgg cggcgctcgt accatacgcg gcgttgcgtc
     1081 gcttggtgct cgaagggcga accgcggacg aaatcgcacg ccgttttcga gtcagccggc
     1141 aactcaccga ataccgcatc aaagtcactc atctttgggc cgaatacaaa cgcgcttctg
     1201 catcgaggac tcagcacgta taattgaatg ttgggcgctg ctgctgaagg acgagtcaac
     1261 gaggacgaag aagaaggagc acagttggtg gcaatcacac catatctcta ctacgaagac
     1321 gttggcggcg ctttgaagtt cttagccaag gcctttggat tccgcaagtt cggcgcccag
     1381 gtgctaggcc ccgaccgcaa gatcaatcac gccgcgatga agcttggcga tgacttgatc
     1441 atgatggggc gcccaccgtc cggatatcgc aatccaaagc ggctcggtca ggcaacgcag
     1501 agtctttaca tcaatgtgtc ggatgtagac aaacatttcg agcgcgccaa gaaagcaggc
     1561 gctaccatcc tcgaggagcc aggtgatacg gaatatggtc accgccgtta tggcgccgaa
     1621 gatcccgaag gccatcagtg gtacttcgcg caggagattc accgtgcgaa atcgaaacgg
     1681 aaaaccaggt gaagccggag agtcagagcg cccaacacgt cgtcaggccg tgtgaaaact
     1741 caagaacttt gaaaatcggg ggatcaaaaa tcattcgacg cgatcagaaa accctttaca
     1801 ggccagatat ggaccagtat tttttcagca gaattttccg ccagggtttt cacacagtct
     1861 gtcgttggac cggagcgcgg gttgcgcgtt ctttaacttt atcgtcgact tcgaggttgt
     1921 tgatatcgcc gcgcccggtc aactcaaccg ttagaaaccg aacgcgagtg ttcggtcgtg
     1981 gtcattagtt cttatgccgg aaacaatgca aaaagcggaa gcaggtttgt ccaccatcga
     2041 caagctgcgc atgctgctcg acatcacgaa aaagatcagt cgctcgttgg atctcaacga
     2101 ggtgctcaac ctcgttatgg aaacgctcga ctcgctgatt ccgtacgacg ctgccggaat
     2161 ctatctggtg aagtgttcac ggcccgtcac ggagttggat ggcgtgcggg acgagacatg
     2221 cgtcttccac accgaagccg tgcgcggata cgacatcgcc gacttgcagg agctgcgcat
     2281 caagatgggc gagggcctga tcggccacgt tgcggtgagc ggcaagccat tcatctcgct
     2341 cgacgtgcgc aaagagccgc gttacatcaa cgcgcgcgcg cgcacacgtt cggaaatggt
     2401 cgcgccgatt atctccaaca atgaagttat cggcgtgttc gatctggaaa gcgacgaact
     2461 caatgcttac tcgaaagatg atctcgatgt tttgatgatg ctcgcgtcgc aagtcgcgat
     2521 catcatcgag aaagtaatgc tgcatgagca gttgatcgag aagcagcggc tccagactca
     2581 actcgaaatt gcgcggcagg ttcagcttca attgctgccg ccgagagatc cgcagctcga
     2641 aggctttgac atcagcgctt acaactttcc gacggaggaa gtttcgggcg actactacga
     2701 ttggacgcgt gtcttcgaag atcaaatcgg aatcgtgatc gccgacgtgt ccggcaaagg
     2761 cgtgcccgcg gcgttgttga tggcctttct gcgcgcgagc ctgcgcgcgg cctcgcacat
     2821 cggttatgcg ccgcacgtct cgatgtccaa agttaactac ttgttgtggg aatccatcga
     2881 gcggaaccag ttcgtcacgg cgttctacgg agttctcgac gcaacgaatc gcacgctcgc
     2941 ttactcaaac gccggtcaca atccgccgtt gttgatggac acggacggaa cggcgcactt
     3001 tgaagagcgc ggcggggtgc cgctggggat gtttcgcgac tcgcggtatt acgaatatta
     3061 cgcgacgatt gatccgggtc aggtcctcgt gctctacacc gacggtgtca cggaagctga
     3121 gaatccggcg ctcgaagaat atggtcgcga gcgactcgct gaagcagtgc gtcgatgtcg
     3181 taacttgggc gcgcgcgaga tgatcgattt catccatcga gacgtgatcg attggacaga
     3241 agggctcggc gcgactgatg acgtgacttt ctttatcgt
//
LOCUS       DASZZE010000103         2927 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_101037, whole genome shotgun sequence.
ACCESSION   DASZZE010000103 DASZZE010000000
VERSION     DASZZE010000103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2927)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2927)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2927
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101037"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..184
                     /locus_tag="VHD88_02040"
     CDS             <1..184
                     /locus_tag="VHD88_02040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20595.1"
                     /translation="YRAIKVNVTDASGQKRIALTRSGRTAGQGANAAKPATRTSVSPT
                     NNNARQPTTNATRKSP"
     gene            complement(278..1174)
                     /locus_tag="VHD88_02045"
     CDS             complement(278..1174)
                     /locus_tag="VHD88_02045"
                     /inference="COORDINATES: protein motif:HMM:NF017970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1003 domain-containing protein"
                     /protein_id="HVS20596.1"
                     /translation="MPADLTGLSDEAQSLALVSLFKRLEPHELEHLAEEVDQVQFKAG
                     EVIFNERDHGDALYVVDQGEVRIWVLDEDVQDVTLAELKPGEFFGELAVLDRGERSTS
                     ATAMVDTTLHRLSSDDFQQFLLDHPDCAIDVICEIGARMRQTNQLVSQRVTRNINREM
                     EEKATIGQRIADKVASFGGSWTFIIIYLSSLIAWMAFNTFVLVHYGRGEEGAQFDPYP
                     YILLNLMLSMTAALQAPIIMMSQNRAAEKDRLAAEQDFKVNLKSELMLEELMRKQKTR
                     DLQMDQLNNALAALQATLKKNQ"
     gene            complement(1249..1611)
                     /locus_tag="VHD88_02050"
     CDS             complement(1249..1611)
                     /locus_tag="VHD88_02050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20597.1"
                     /translation="MGRDSATTERLRHLISKIESLTDGGGLSWERQIGSAHRYARWNN
                     NLLILGPAAPMSDQPVPRYLFVTPFDSPDCIEINSDDDELGPAVMKLVESVETASKNE
                     PPTDPFSVTGDLLNRLVS"
     gene            1842..2501
                     /locus_tag="VHD88_02055"
     CDS             1842..2501
                     /locus_tag="VHD88_02055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20598.1"
                     /translation="MNPTICIVNRSKTVSDADVKRVLPTLQKQITRDFEPVWGWGAHL
                     RFNAKKFDMKVIIKDTAGKGGYLRYHIKNGKPITYIFAKDIADSGEYTTTLSHELLEM
                     IADPGVNLYAIGKFRDGGRRRSGLFGMEVCDPVESNYYKIYGVRVSDWVRPEWFEPEH
                     KKSQMKMDYMGVIDAPFMLADGGYADVLAGSRWHTLRGRKANVKRVRHRAQARKQALS
                     G"
BASE COUNT          667 a          802 c          787 g          671 t
ORIGIN      
        1 gtaccgcgcg atcaaagtaa acgtcacgga cgccagcgga cagaagcgca ttgcgctcac
       61 ccgttccgga cgaacggccg gacaaggcgc aaacgccgca aagcccgcaa ccagaacgag
      121 tgtatcgccg acaaacaata acgcgcgcca acccacgaca aacgccacgc gcaagtcgcc
      181 ttaacgacga ggttccaatc ttcttaatga gaaagggcac agatgactgt gcccttttgt
      241 tttaatgaat cgaggcgatg gccacggccc gcaagattta ttggttcttt ttcagagtcg
      301 cctgcaaagc cgcgagcgcg ttattcaatt gatccatttg taggtcacgc gttttttgtt
      361 tccgcattaa ttcttccagc atcagctcgc tcttcaaatt gactttgaag tcctgctcgg
      421 cggcgagccg atctttttcg gccgcgcgat tctgcgacat catgatgatc ggcgcttgca
      481 gcgcagccgt catcgacagc atcaggttga gcagaatata aggatatgga tcgaactgcg
      541 ctccctcttc accgcgcccg taatggacga gtacgaatgt attgaacgcc atccaggcaa
      601 tcagagagct caaatagata atgatgaacg tccacgaacc gccaaacgac gcaaccttgt
      661 cggcaatgcg ctgaccgatg gtcgccttct cttccatctc gcggttgatg tttcgtgtga
      721 cgcgctgtga aaccagttgg tttgtctggc gcatgcgcgc gccgatttcg cagatgacgt
      781 cgatggcgca atcgggatga tcgagtaaga actgttgaaa gtcgtcgctg ctcagacggt
      841 gcagcgtcgt gtctaccatc gccgtggcac tcgtcgaacg ctcgccgcga tcgagcacgg
      901 ccagctcgcc aaagaactcg cccggcttca gctccgccag ggttacgtcc tggacgtcct
      961 cgtccaggac ccagatacgc acctcgccct ggtccactac gtaaagtgcg tcgccgtgat
     1021 cgcgttcgtt gaagatcact tcgccggctt tgaattgaac ctgatcgact tcctcggcga
     1081 ggtgctccag ctcgtgtggc tcgagccgct tgaaaagtga aacgagagcc aggctctgcg
     1141 cttcatcgct caatccggtt aggtctgctg gcatagcaac tagtccttcg ctttcaagtg
     1201 agatgtgcgc catcggcgcg cagatttttg cggcttacga gaaaattctt agctcaccag
     1261 gcgattgagt aagtcgccgg tgacggaaaa cggatcagtt ggaggctcat tcttacttgc
     1321 cgtctcgaca gattccacca gcttcatcac cgccgggccg agttcgtcat catcagaatt
     1381 aatctcgatg caatccggag agtcgaatgg agtcacgaac aagtaacgcg gcacgggctg
     1441 gtcgctcatc ggcgctgccg gcccgagaat cagcaaattg ttgttccagc gcgcgtaccg
     1501 gtgcgctgaa ccgatttgtc tttcccaaga aagcccgccg ccatcggtca gcgactcgat
     1561 cttcgagatc aagtgtcgca agcgttctgt tgtagccgaa tcgcgaccca tgcgctcctc
     1621 cgaagaaact ccgtgtgatc agcgcggcga gattagcatc tttaagagta aatgggaaca
     1681 ctctgcatcc gcgcgtttta tcctgccatg cgaaccgctg gcggataatg tttgactcag
     1741 aagtgtcagt tggcatatcg tcgcgccgcc tcgctgcttg cgcgcgccaa agccgcccga
     1801 acagtgatcg atcacaaact gaaaacagga gaaggtgagc aatgaatccc acaatttgca
     1861 ttgtcaatcg ctcaaagacc gtctctgatg ccgacgtgaa gcgcgttctt cccaccttgc
     1921 aaaaacagat cacgcgcgac tttgaacccg tctggggatg gggcgcgcat cttaggttca
     1981 atgcaaaaaa attcgacatg aaggtgatca tcaaagacac cgccggcaaa ggcggctatc
     2041 tccgttatca catcaagaat ggcaagccca tcacatacat cttcgcgaag gacatcgccg
     2101 actcaggcga gtacacgacc acgctctcgc atgaactgtt ggaaatgatc gccgatcccg
     2161 gcgtgaacct ttacgcgatt gggaaattcc gtgacggcgg caggcgaaga agcggactct
     2221 ttggcatgga ggtctgcgat cccgtcgaat caaactatta caagatctac ggtgtgagag
     2281 tttcagactg ggtgcggccg gaatggttcg agccggagca taagaagagt cagatgaaga
     2341 tggattacat gggcgtgatc gacgcgcctt tcatgctcgc cgacggcggt tacgccgacg
     2401 tgctggccgg cagcagatgg cacactctgc gcggacgcaa agccaacgtg aagcgtgttc
     2461 gtcatagagc gcaagcaaga aagcaggcgc tgagtggata gtgcatgagg gagttctttc
     2521 ggacccacca cttgacgaat tgttctgcga gatcgcgacc tgcagtagcg ttttgagtag
     2581 agcggagcga aaataggtga atatgcttct agcatattat ctattccttg tcgtgggcac
     2641 cgtgttactg gcagcgctcc gcgagagtcc gctcgtgtca cagaagccta tatctcagtt
     2701 acctgttgct tcctccattc attctcgttc tgctggcgct gaacttgggt tttccaggag
     2761 ccttttgcac tgacattgct gctcggccta gcaggctgct gaaaaattga gcgttgatag
     2821 agcattcgtc ttcatttatc agttctggtt atcagtgatg agtgattttc tttctgccgt
     2881 tgatcccttg agtggctcat ttgccacttt ggatcgcttg tctaagc
//
LOCUS       DASZZE010000104         2350 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_36998, whole genome shotgun sequence.
ACCESSION   DASZZE010000104 DASZZE010000000
VERSION     DASZZE010000104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2350)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2350)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2350
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36998"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1335
                     /locus_tag="VHD88_02060"
     CDS             <1..1335
                     /locus_tag="VHD88_02060"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HVS20599.1"
                     /translation="PLNDRILKEQEDFNRRYNLTIDWRTLGEYFLRFDKQGAGVNLGT
                     FVGATQVREYVIGYDDRPPTPSELEQMKKLVADAMKDGALGVSTALQYVPARFAKTDE
                     IVELAKVAHQYGGIYISHQRSEANAIDDSMKEVFEIARRANIPVEIWHFKTAYQKNWG
                     RMPEMLRRIEAARRQGLKITADVYPYVAGSTSLSACLPPWALEGGTDRMIARLKDPQT
                     RARLKKEITTDAKEWENIYLGSGGPSGILIASVVNRDLESSQGKRLSEIASGQNKDPL
                     DALFDFVIADHGQTGAIFFMMKESDMQAALKSPFVSICTDNGARATDGPLAGSKSHPR
                     GWGTYPRILGRYVRDQHLMPLEFAIHKMTGLPAANLGLKNRGLIREGYFADITIFDPK
                     TVIDRATFEDPNQYPVGINFVIVNGQIEVDNGQRTPALAGRVLRGPGYLSHR"
     gene            complement(1423..1713)
                     /locus_tag="VHD88_02065"
     CDS             complement(1423..1713)
                     /locus_tag="VHD88_02065"
                     /inference="COORDINATES: protein motif:HMM:NF020317.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GYD domain-containing protein"
                     /protein_id="HVS20600.1"
                     /translation="MPTYIALLNWTQQGASKISASPKRLDAGRKAFKKAGAEIKDVYL
                     TMGRYDLVCVIEAPDDETYAKAILGLATQGNVSTETLKAFSEDQYRKITGSL"
     gene            complement(1817..>2350)
                     /locus_tag="VHD88_02070"
     CDS             complement(1817..>2350)
                     /locus_tag="VHD88_02070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20601.1"
                     /translation="ILSTMGALATTLFGVLTGHLVRCKNRTPIEKVAHMFIAGVCCVM
                     IGWAWNAWFPINKSLWTSSYVFFTGGLALQFLALCYWLIDIKGCKLWTKPFVIFGVNA
                     IVLFVGTGVMARLTGLIKIPRSDGSRPSLQGYIYNNAYASWLSPNKASLAFAISFILL
                     WLFLLWLLYRKNIIVKI"
BASE COUNT          565 a          640 c          638 g          507 t
ORIGIN      
        1 ccgcttaacg atcgcattct caaagagcag gaagatttca atcggcgcta caacctgacg
       61 attgattggc gcacactcgg cgaatacttc cttcgttttg acaagcaggg cgccggagta
      121 aatctcggca cgttcgtggg cgcgacgcag gtgcgcgagt acgtgatcgg ttatgacgat
      181 cgcccgccga ctccttcaga gttggaacaa atgaagaagc tggtggccga cgcgatgaaa
      241 gatggggcgc tcggagtctc aactgctttg cagtacgttc cggcacggtt tgcgaagact
      301 gatgagatcg tcgaactcgc aaaagtcgcg catcaatacg gcggtattta catcagtcac
      361 cagcgcagcg aagccaacgc gattgacgat tcgatgaaag aagtttttga aatcgcacgc
      421 cgcgccaata ttcctgtgga aatctggcac ttcaaaacgg cttaccagaa gaactggggc
      481 cgcatgcctg aaatgctgcg ccgcatcgag gccgcacggc gacagggttt gaagatcacc
      541 gccgatgttt atccttatgt cgccggcagc acttcgctga gcgcgtgcct gccgccgtgg
      601 gcgctggagg gcggaacaga tcgaatgatt gctcgcctga aggatcccca gacgcgcgcg
      661 cggctaaaaa aggaaataac aactgatgcc aaagaatggg agaacattta tctcggcagt
      721 ggcggtccga gcggaatctt gattgcttca gtagtgaatc gcgatctgga aagttcgcag
      781 gggaagcggt tgtccgaaat cgcatctggc cagaataagg atccactcga tgcgctcttt
      841 gatttcgtca ttgccgatca cggacagacc ggcgcgatct tcttcatgat gaaagaaagc
      901 gatatgcagg ccgcgctgaa atctccattc gtcagcatct gcaccgacaa cggcgcgcgc
      961 gcgaccgacg ggccgctggc cggatcgaaa tcgcatccgc gcggttgggg cacttatccg
     1021 cgcattctcg gtcgctacgt gcgcgaccag catctaatgc cgttggagtt tgcgattcac
     1081 aagatgaccg gattgccggc tgcgaatctg ggtttgaaga atcgcggttt gattcgcgaa
     1141 ggctatttcg cagacatcac catcttcgat ccgaaaacgg tgatcgatcg cgcgactttt
     1201 gaagatccga atcagtatcc ggtgggaatc aactttgtga tcgtcaacgg acagatagaa
     1261 gtcgacaacg ggcagcgtac gccggcgctg gccgggcgag tattgcgtgg accggggtat
     1321 ttgagccaca gatgaacaca gatttgcacg gataagaaac taaactcaac tctttgtcat
     1381 gatcagcgtt tatccgcgtc catccgtggc tgatttagtt cttcacaacg acccggtaat
     1441 cttgcggtat tgatcctcgc tgaaagcttt cagcgtctca gtgctaacgt tcccctgagt
     1501 ggccagtccg agtatcgcct tcgcataagt ctcgtcatca ggagcttcga ttacgcagac
     1561 cagatcatag cggcccatgg tcaggtaaac atccttgatt tcagctcccg ctttcttgaa
     1621 cgccttgcgc ccagcgtcga gccgctttgg gctggcgctg attttcgacg ctccctgctg
     1681 cgtccagtta agcagcgcaa tgtaagttgg catgtgtgtt ctccttcacg caaatcgatc
     1741 gtgtaggggc gcacctgcgt gtgcgccctc attgaacccg aacgagcggg cggacacgca
     1801 ggtccgcccc tacaaatcag atcttgacga tgatgttctt tcgatacagc agccacaaca
     1861 gaaacagcca caaaagaatg aatgaaatcg cgaacgccag cgaagcttta ttcggtgaaa
     1921 gccaggacgc gtatgcattg ttgtagatgt agccctgcag cgacggacga ctaccgtccg
     1981 agcgcggaat tttgatcagg cccgtcagcc gcgccatcac tcctgttccc acgaacaaaa
     2041 caattgcatt cacgccaaag atgacgaacg gctttgtcca aagcttgcat cccttgatgt
     2101 caatcagcca gtaacacaag gcgagaaatt gcagcgccag tcctccggtg aagaaaacat
     2161 acgagctggt ccacagagat ttgttaatcg gaaaccaggc attccatgcc cagccaatca
     2221 tcacgcaaca cacgcccgcg atgaacatgt gtgcgacctt ttcgatgggc gttctgtttt
     2281 tgcagcgcac cagatgtccg gttagaacgc caaacagcgt cgtcgccaac gcgcccatcg
     2341 tgctcagaat
//
LOCUS       DASZZE010000105         2505 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_165907, whole genome shotgun sequence.
ACCESSION   DASZZE010000105 DASZZE010000000
VERSION     DASZZE010000105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2505)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2505
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_165907"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..303)
                     /locus_tag="VHD88_02075"
     CDS             complement(<1..303)
                     /locus_tag="VHD88_02075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20602.1"
                     /translation="MAPQPLNVICFATFFKGGEFMRECKARGCNVILITKAKMLHEDW
                     PRDVLDDLFAVPNDAPVELFLDLVSHIAQTRKPDRIVALEEFDVVIAALAREHLCLP"
     gene            462..2024
                     /locus_tag="VHD88_02080"
     CDS             462..2024
                     /locus_tag="VHD88_02080"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-coumarate--CoA ligase family protein"
                     /protein_id="HVS20603.1"
                     /translation="MIFRGPYPDVAIPEVSLTDFVFPSASGIQDKPALIEGLTGRTWT
                     YAQLADSVRRAALSLAKKGFKKGDVFGIYSTNCPEYAIAFHAVAMLGGINTTLNPLYT
                     AEEAAHQLTDAGAKLLATAPQFIDKARAAAQQSKIDELFVFGEGEGATPFDSLLESDG
                     DVPRVEINPREDLVALPYSSGTTGLPKGVMLTHYNLIANMCQMDGLDYFHRDDTLLCV
                     LPLFHIYGLVVVLNMGLHLGATIVTMPRFDLEQFLGLIEKYRVTLSHIVPPIVLQLAR
                     NPIVEQHDLSSLTMIFSGAAPLGEELSRECMQHIGCSIRQGYGMTETSPVTHSSPADS
                     AKMKLGSVGPPAPNTECKLIDPATGGELGPNQEGELWVRGPQIMKGYLNNLEATARTI
                     DADNWLHTGDIGYADEDGHFYIVDRVKELIKYKGFQVAPAELEAILLTHPAVADAAVI
                     PCPDDEAGEVPKAFVVTKGETSAEAIMEFVEERVAPHKKIRFVEFIEQIPKSASGKIL
                     RRVLKEREKASS"
BASE COUNT          586 a          662 c          721 g          536 t
ORIGIN      
        1 cggcaggcac agatgctcgc gcgcgagcgc cgcaatgacg acatcgaatt cttccagcgc
       61 cacgatgcga tccggtttcc gcgtctgcgc gatatggctg acgagatcga gaaacaattc
      121 gaccggcgca tcgttaggca ccgcgaacag atcgtcgagc acgtcgcgcg gccagtcttc
      181 gtgcagcatc ttcgctttcg taatcagaat cacgttgcag ccacgcgctt tgcattcgcg
      241 catgaactcg ccgcctttga aaaaggtggc gaagcaaatc acgttgagtg gttgtggtgc
      301 catgacgcgc cggaagttta gagttcagcc tttaggctgc tgtgttgaca agacaagcta
      361 aagcttgaac tctgaaccgc gtcactatac aactttggtg tcgtttggtc agcagaatcg
      421 tgtacactgg gccgcgtttt tggagtccat agaaatcaaa gatgatcttt cgtggaccat
      481 accctgatgt tgctattccg gaagtctcgc tgactgattt cgtttttcca tcagcgagcg
      541 gaatccagga caagccggcg ctgatcgaag gtctaaccgg ccgcacatgg acgtacgcgc
      601 aacttgcgga ctcggtgcgt cgcgcggcgt tgagcctggc taagaaggga ttcaagaaag
      661 gcgacgtctt cggcatctac agcacgaact gtcctgagta tgcgatcgcc tttcatgctg
      721 tggcgatgct cgggggcatc aacaccacgc tgaatccgtt gtacaccgcc gaggaggcag
      781 cgcatcagtt gaccgatgcc ggagcgaagc tgctggcaac cgctccgcag ttcatcgaca
      841 aagcgcgcgc agccgcgcag caatcaaaga tcgacgaact cttcgtcttt ggcgaagggg
      901 aaggagcaac tccattcgat tcgctgctgg aaagtgacgg agacgttccg cgcgttgaga
      961 tcaatccgcg cgaagatctg gtggccctgc cttactcgag cggtacgacc gggctgccga
     1021 agggcgtaat gctcacacac tacaacctca tcgcgaacat gtgccagatg gacggtctgg
     1081 attactttca tcgcgacgac actctgcttt gcgtcttgcc gctctttcat atttacggcc
     1141 tggtcgttgt gctgaacatg gggctgcacc tgggcgcaac catcgtcacg atgccgcgct
     1201 ttgatctcga acagtttctt ggtttgattg agaagtatcg cgtcacgctg tcgcacatcg
     1261 tgccgccgat cgttttgcaa ctggcgagaa atccgattgt tgagcaacac gatctatcca
     1321 gcttgacgat gattttttcc ggcgcggcgc cgctgggcga ggaactttcg cgcgagtgca
     1381 tgcaacacat cgggtgcagt attcgtcagg gttacggcat gactgaaacc agtcccgtta
     1441 cgcacagcag ccctgccgat tccgcaaaga tgaaactcgg atccgtcggc ccgccggcgc
     1501 caaacaccga gtgcaagttg atcgatccgg cgacaggcgg tgagcttggt ccaaatcagg
     1561 aaggcgaact ttgggtgcgc gggccgcaaa tcatgaaagg ctatctcaat aatctcgaag
     1621 cgaccgcgcg caccatcgac gcggacaact ggctacatac cggcgacatt ggttatgcgg
     1681 acgaagacgg acacttttac atcgtcgatc gcgtgaagga gctgattaag tacaaaggat
     1741 tccaggttgc gccggcagaa ctcgaagcga ttctgctgac gcatcccgcg gtcgcggacg
     1801 ccgcggtaat tccttgcccg gacgatgaag ccggcgaggt gccgaaggct tttgtggtaa
     1861 caaaaggcga gacatcggcc gaggcgataa tggagtttgt ggaagagcgc gtcgcgccgc
     1921 ataaaaaaat ccgcttcgtc gaattcatcg agcagattcc gaaatcggca tctggtaaga
     1981 tcctgcgccg cgtgctgaag gaacgagaaa aggcgagtag ctagcagtct gtcggaaaaa
     2041 ccttctccgt gtgctccgtg tcttcttaga aacttgctca aaaacccctt atttttcggg
     2101 gttcgcaagt ttcatctcgt tatctgctcg tcgcagtacg agcaaggagg ctccgtggtg
     2161 gattgttttt cttagcaatt tcaaaacgga gacacggaga tcacggcgtt accggctcta
     2221 tgggcaaaca gaagatggcc attacttatt tgtagtgctg gagcgaatca gcggagccag
     2281 ctacaaacca attaccgcac gggatatgac cgatggtgag aagcgggggt acaggagatt
     2341 acgaagatga gcaaactaga gataccagag ttcaagacct acgaagaaga ggctgcattt
     2401 tgggacaacc tcgatacagc cgatttcatg gacgacgacg gggagtggtt tcacttcgaa
     2461 gcggaaaacc aaagagccgc acgcgtggcg atcctgcccg aagtg
//
LOCUS       DASZZE010000106         8713 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_183482, whole genome shotgun sequence.
ACCESSION   DASZZE010000106 DASZZE010000000
VERSION     DASZZE010000106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8713)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8713)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8713
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183482"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1194)
                     /locus_tag="VHD88_02085"
     CDS             complement(<1..1194)
                     /locus_tag="VHD88_02085"
                     /inference="COORDINATES: protein motif:HMM:NF013100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HVS20604.1"
                     /translation="MNLIRSPRVARIAFSLFILFTLIGSATVETSGRGRHARGRARAG
                     AARRVARGGRLSRRERRMLARTGRGGRVRLSKKELRAERKRSAREEAGYLAKLEKRAG
                     HKLSKRERAAEMRRFESKHRREIEEARRRAEAARLAAIARQHALDEGLRNEVQANIAK
                     DSTVGEDMEVRNAAIAALGNHAGTVVVMDPKTGRVYTVINQEWALRRGFKPCSTIKLV
                     TGVAGLCEKVIQPIETVSDGSSYRIDLTDALAYSNNSYFQHVGGQVGFDKMVSYAREL
                     GLGERTGINYVNESQGKVPLFKSGYAVNHMSSHGDDFEVTAIQLATLVSAMSNGGKLL
                     VPHLPRTVAENTQFKTEVRRKVNVENETWKRMVPGMIGAVNYGSGKKAYRPEQTVAGK
                     TGTCIG"
     gene            1553..3055
                     /locus_tag="VHD88_02090"
     CDS             1553..3055
                     /locus_tag="VHD88_02090"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HVS20605.1"
                     /translation="MLNSFRVRLLLLLAALLMLTLSVQYYVNLRAVRSNTQFIVDRQQ
                     AIMAGVALGVDSLRSKKYLDQMRDEAKQPLLGEQAELVKNILLVDDHGNILDSLDKNQ
                     TPRWNPDKSISYVKIKDISLPPLNSAVELPPDNTPLPEGMTIGPQHRAGNAGAFYFPV
                     ETTNGRRYVIVVLDSANTLTALLERQSRQSLLYTLAVLLVTTCLTAIVVWRFTRPIKS
                     LSIAARRVAGGDLSFRVPLSGRHDEMGELTEQFNDMTIKLGRTRELETQLHEAEKAAV
                     VGRLASAIAHEIRNPLNYINLTLDHLRASFAPNDAEKYEKFSHLTKQLKSEVARINTR
                     ITEFLNYSRPAKLELQPIDLGTTARDALRLFEVQAGESNVETNVDQQGDVPPVMADTE
                     SLRSALTNLIINGLQAMDGSGGKLSINLSSDEGGTRVRIEVSDSGRGIAPEDISKVFE
                     PYYSTRETGTGLGLAIVKKAVDDHHGTISVKSKVGEGTTFTITLPTTPAT"
     gene            3092..4438
                     /locus_tag="VHD88_02095"
     CDS             3092..4438
                     /locus_tag="VHD88_02095"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HVS20606.1"
                     /translation="MPRKTILVVDDEKPQRDILQEILTTAGYDVTSAASGEAALKFAK
                     ERSFDLALTDLKMTGMDGIELLQQLVALDSSMIVILLTAHGTIDSAKDALRRGAFDYL
                     QKPFDRDVLLGTIKRALGNLDQIDVEIISASPKMEAVKKMILKVARSNSTVLIRGESG
                     TGKELVARAIHNQSPRSSDMFQAVNCAAINENLLESELFGHEKGSFTGAHAEKKGLFE
                     VADRGTLFLDEIAELDVGMQAKLLRALQERRIRRVGGTHEMPVDVRVVAATNRDLRAM
                     VSDGRFRDDLYYRINVLSIDVPPLRERREDIPVLIDYFLKKHTRNTSRLVKGLKPETK
                     RMMNDYGWPGNVRQLESAIERAILLCEGDMITPDDMPSELQQESRGTAAGAFKLPPEG
                     ISFEEVEKNLILQAMDQTDYNITKSAKLLGLTFRTLQYRLEKFGIKKPDGKGADEE"
     gene            4639..5010
                     /locus_tag="VHD88_02100"
     CDS             4639..5010
                     /locus_tag="VHD88_02100"
                     /inference="COORDINATES: protein motif:HMM:NF022853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD
                     domain-containing protein"
                     /protein_id="HVS20607.1"
                     /translation="MGSTDATIKLLISPGFHVNANPATFPYLIPTELTAGKVEELIVG
                     KPIYPSAEKKKFQFADKPLAVYEGEVQIRLPLRTEDILSDTEVSVPISVRVQACDNEK
                     CYAPDVLKTWISVHWKYCCDD"
     gene            5003..5218
                     /locus_tag="VHD88_02105"
     CDS             5003..5218
                     /locus_tag="VHD88_02105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20608.1"
                     /translation="MTERIWIIVAGVFVVVAAVFLWRNNLSATFVTATLGAVAWFLSY
                     RVQLRAKISANDHDPTEKEITSDTDEN"
     gene            5208..5789
                     /locus_tag="VHD88_02110"
     CDS             5208..5789
                     /locus_tag="VHD88_02110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20609.1"
                     /translation="MKTRLRTVCLVLLLISSFIAAMTSSLFAGEKPPATRATPSDQTE
                     VRSAVQHIFEQLKAGKYEALYDSLPSSTRARMTRDRFVAALQNTRNLYQLDRIEIGAV
                     RVSGDLAVVDTVMYARIAQPFNADGKLVVQQYLVREDGSWRVATGDRATIDRFLKSNP
                     SFARRFPIKRPRPFIKQNGQWVEFQPPARKPST"
     gene            complement(5824..6066)
                     /locus_tag="VHD88_02115"
     CDS             complement(5824..6066)
                     /locus_tag="VHD88_02115"
                     /inference="COORDINATES: protein motif:HMM:TIGR01764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HVS20610.1"
                     /translation="MSDREEFLTAKQLAEVLQVSESTVRRLAHKRRIPSVRLTPRIIR
                     FHLDAVREALDVPRISSPHGVQTDDAQLSFEDLLSS"
     gene            complement(6213..6833)
                     /locus_tag="VHD88_02120"
     CDS             complement(6213..6833)
                     /locus_tag="VHD88_02120"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HVS20611.1"
                     /translation="MKPNILIAVLALMCLFGLTCFAQDKNTGAIKGKVHVEKGSPAGV
                     AVILRQGEREVTRTMTDKHGDFQIAHIAPGVYGLTFRKPGLSVGSVEDLGVTAGKTRA
                     LHDLVLSVDEGSIAFIRGSVFTESGRSVPGVRVELARIVDENSTQKLDSRVTGETGEF
                     VFRLPPETAKYRVTLKADGVQPASKDVEVEGAAVYRVALSLKAIPK"
     gene            6962..7999
                     /locus_tag="VHD88_02125"
     CDS             6962..7999
                     /locus_tag="VHD88_02125"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HVS20612.1"
                     /translation="MFVHLTILRTIALIACAIIMIAAVQVHGFAQDDAAKKERPRRVL
                     PTTQEPQDVIRIDTDLVPVDVTVTDAKGRLVRNLKKEDFKLYEDGIERPIASFNIEKI
                     EGAPRPAAIVFALDLSGSMTPEEIERVASAMREFSRRLSEHPAVFAVMTFGMHVKTIQ
                     SFTSDREKLERAYERLSHEPNGMSTHTYDAVDDAVRMLVRHAPLVREHQLMKRAVVVI
                     TDGFPVGDVVSPDTVIERANAADTSVYVVTMPSYTHLLASVQVTPLPTPLDVSGLVEK
                     TGGRSVYASENDLGPLFRAIAEEVASAYVLGFYPPEENRNNGKFHTIRIEGPGGVTLR
                     QSRPGYQSQAK"
     gene            complement(8074..8259)
                     /locus_tag="VHD88_02130"
     CDS             complement(8074..8259)
                     /locus_tag="VHD88_02130"
                     /inference="COORDINATES: protein motif:HMM:NF044773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20613.1"
                     /translation="MPTGTCPECDADVHVDTDVDKGETVDCEECGVQLEVVGLDPVEL
                     DIVEEESLDDDEDEDEY"
     gene            complement(8392..>8713)
                     /locus_tag="VHD88_02135"
     CDS             complement(8392..>8713)
                     /locus_tag="VHD88_02135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20614.1"
                     /translation="VSKALDRDRAVDESGNQIAVFGRRGARPFTFEEAQRMLRVNEGR
                     GDSFTVTDEPATAPRSPKAANATVSSSTIGDSSGTLGALVASACYLSPVSDSPSRAAK
                     TNGW"
BASE COUNT         1937 a         2477 c         2376 g         1923 t
ORIGIN      
        1 accgatacac gttcccgtct ttccagcgac agtttgttcc gggcgataag ctttcttgcc
       61 cgagccataa ttgacggccc caatcattcc ggggaccatg cgcttccagg tttcattctc
      121 aacgttaacc ttgcgacgaa cctcggtctt gaattgcgtg ttctctgcga ccgtccgcgg
      181 cagatgcggc acgagcagct tgccaccgtt cgacatcgct gaaaccagcg ttgccaactg
      241 gatcgcagtg acttcaaaat cgtctccgtg ggaactcata tggttcaccg catatcccga
      301 tttgaatagc ggcaccttgc cctgcgactc gttcacgtaa ttgattccgg tcctttcgcc
      361 caggcccaac tcacgcgcat acgaaaccat cttgtcaaag ccgacctggc cgcccacgtg
      421 ttgaaagtag gaattgtttg agtaggccag agcgtccgtc agatcgatcc gataactgct
      481 gccgtcgctg acagtttcga tgggttgaat gactttctcg cacaagccgg cgacgccggt
      541 aaccagctta attgtcgaac aaggtttgaa tccccggcgc agcgcccatt cctggttgat
      601 gactgtataa acgcgaccag ttttcggatc catcacgacg accgtgccgg cgtgattgcc
      661 gagcgcagcg atcgcggcgt tgcgaacttc catgtcctca ccaacagtgc tgtctttggc
      721 gatgttggct tgaacttcgt tgcgcaaacc ttcgtcgagt gcatgctgtc gcgcaatcgc
      781 agccagtctc gcagcctcgg cgcgtcgacg cgcttcttcg atttcacgac gatgcttcga
      841 ctcgaaccgc cgcatctcgg cggcgcgctc gcgcttgctc agcttgtgac cagcgcgctt
      901 ctcgagtttt gcaaggtacc ccgcttcttc gcgcgctgac cgtttacgtt cggcgcgcag
      961 ttcctttttc gagagacgca cgcgtccgcc gcgtccggtt cgcgccagca tccgtcgctc
     1021 gcgacgcgat agacggccgc cacgtgcaac gcggcgcgca gcaccggcac gagcccggcc
     1081 tctcgcgtgt ctgccacgcc cgctggtttc gactgtggcc gaaccaatta gtgtgaagag
     1141 aatgaataag ctgaacgcaa tgcgggcgac cctgggggaa cgtattaggt tcatcagcaa
     1201 ctcctcgtaa aagacttcgc aaatccagta gcgctcgagg cggaaccaga taaaacgctc
     1261 gctgctttga tttgcacgct gaggggcgac gcgcgctgct cgtccttgta agtttagaaa
     1321 cttttaaggg cgcttaaatt cctgatacct ggactcttga atttccttcc gctaccagtc
     1381 taaaaacgtg aggcgggatc acctcccgca ggtagcccca ggggaatttg ctttgaggcc
     1441 gggccaacta taacatcagc ctgagcaaaa cggcaaccca aatatcctcg ttctgatccg
     1501 cttcgcattg gttttggcgc gctttttgct gtgataaacg gctttgtcag tattgctgaa
     1561 cagttttcgg gtgaggttgc tgctgctact cgcggccctg ctgatgctca cgttgagtgt
     1621 gcagtactac gtcaacctgc gcgccgtgcg cagcaacacg caattcattg tggatcgaca
     1681 acaggccatc atggccggcg tggccctcgg agtcgacagt ctacggagta agaagtatct
     1741 cgatcagatg agagacgaag ccaaacagcc tctgctcggt gagcaggcgg aacttgttaa
     1801 gaacattctg ctggttgatg atcatggaaa tattctcgac agcctggata agaatcaaac
     1861 tccgcgatgg aatcctgaca aatcgatcag ttatgtaaag atcaaagaca tttctttgcc
     1921 gccattgaac agcgcagtcg aactccctcc cgataacacg ccgctgcctg agggcatgac
     1981 gattgggccg cagcaccggg ccggaaacgc cggtgcgttc tactttcctg ttgaaaccac
     2041 aaatggccgt cgttacgtga tcgttgtgct cgactcagcc aatacgctga cagcattatt
     2101 ggaacgtcag tcgcggcagt ctctgcttta cacactggcg gtcttactgg tcaccacctg
     2161 tttgactgcg atcgtagttt ggcgtttcac gcgcccgatc aaatcgttgt cgattgcagc
     2221 gcggcgcgtt gccggcgggg atctttcctt tcgcgttccc ctgagtggga ggcacgacga
     2281 gatgggagag ctgactgaac aattcaacga catgacgatt aagctcggcc gcacgcgcga
     2341 acttgaaacg caactgcacg aagcggagaa agccgctgta gttggacgcc tggcgtcagc
     2401 gattgcgcat gagattcgaa atccgctgaa ctacatcaac ctgacgctcg atcacttgcg
     2461 cgcgagcttc gcgccgaacg acgcagagaa atacgaaaaa ttcagtcatc ttacgaaaca
     2521 attgaagtct gaggtcgcgc gcatcaatac tcgcatcact gagtttctga attactctcg
     2581 cccggcgaaa ctggagctac agccgattga tctcggtacg actgctcgcg atgcactgcg
     2641 gctttttgaa gttcaggccg gcgaaagcaa cgtcgaaacc aacgttgacc agcaaggtga
     2701 tgttccgccc gtcatggccg acacggagtc gttgcgctcg gcgctgacaa acctcatcat
     2761 caatggactg caggccatgg acggatcggg cggcaagctg tcgattaact tgtcgagcga
     2821 cgaaggaggg actcgagtcc gcatcgaagt aagcgacagc ggcagaggca tcgcgcccga
     2881 agacatctcg aaagtttttg aaccatacta ttctactagg gagaccggta ctgggctggg
     2941 attggcaatt gtcaagaaag ccgttgacga tcatcacggg acgatctcgg taaaatcgaa
     3001 agtaggcgaa ggcacgacgt tcacaattac gctgccgaca acgccagcga cttgatgttt
     3061 agcggcgggc tactgcccgc cagaatgaat catgccacga aaaactatac ttgtagttga
     3121 cgacgagaaa ccgcaacgcg acatcctgca ggaaatcctg acgactgccg gctacgatgt
     3181 cacttccgca gcttccggcg aagccgcgct caagtttgcc aaagagcgca gcttcgatct
     3241 cgctctgact gatctgaaga tgaccggcat ggacggcatc gaattgctcc agcaactagt
     3301 ggcgctagat tcttcgatga tcgtcatttt gttgactgcg cacggcacga tcgattcggc
     3361 aaaggacgct ttgcggcgtg gggcgttcga ctatctgcaa aagcctttcg accgcgacgt
     3421 cctgctggga acgatcaaac gtgcgctggg caacctcgat cagatcgacg tcgagatcat
     3481 ttccgcttcg ccgaagatgg aagcggtaaa gaaaatgatc ttgaaagtcg cgcgctcaaa
     3541 ctccaccgtt ttaattcgcg gcgaatcggg caccgggaag gagttggtcg cgcgcgcgat
     3601 tcacaaccaa tcaccgcgtt cgtcggacat gtttcaggcg gtcaactgcg ccgcgattaa
     3661 cgagaatctg ctggaatcag aattgttcgg tcacgagaaa ggctcgttta ccggcgcgca
     3721 cgcggaaaag aaaggactgt tcgaagtcgc agatcgcggc acgctctttc ttgatgaaat
     3781 cgccgagctt gacgtgggca tgcaagcaaa acttctgcgc gctttgcagg aacgcaggat
     3841 tcgccgggtc ggcggcacgc acgaaatgcc tgttgatgtg cgcgtcgtgg cggcgacgaa
     3901 tcgcgatctg cgcgcaatgg tttctgacgg acgctttcgc gacgacctct actatcgcat
     3961 caacgttttg tccatcgacg tgccaccgct gcgcgagcgc cgcgaagaca ttcccgtgtt
     4021 gattgattac tttttgaaga agcacacgcg caacacttcg cgtctggtaa aagggctgaa
     4081 gcctgaaaca aaacggatga tgaacgacta tggctggcct ggaaacgtcc gccagcttga
     4141 atcggcaatc gagcgcgcga ttcttttgtg cgaaggcgac atgatcacgc ctgacgacat
     4201 gccctctgag ctgcagcagg aatcgcgcgg caccgcggcc ggcgctttca agctgccgcc
     4261 cgaaggtatt tcgttcgaag aagtcgagaa gaacctgatc ctgcaagcca tggatcagac
     4321 cgattacaac atcacgaagt cggcgaagct tctcggtctg actttccgca cgttgcagta
     4381 tcgtttggag aagtttggga tcaagaagcc cgacgggaag ggagctgatg aagaatgacc
     4441 cgagcgctta ccgttgtctg ctgcgtgggg gctacgttcg cgttcgcagg gtgcagccgc
     4501 ggcactcgct ctgaacccgc aagttcgccg ccgtcctcgt tttcgttttc gcctccgtct
     4561 tcgtcaccga cgcttgccga gatttcatcc tctgctcaag ttgtcaaggt taatcctctt
     4621 ccagttgaaa ttactcatgt gggttccacc gacgcgacca tcaagcttct gatctcgccg
     4681 ggatttcacg tcaacgccaa cccggcgaca tttccttatc tgattcctac ggaactgacc
     4741 gcaggcaagg tcgaagaact catcgtgggt aaacccattt atcccagcgc cgaaaagaaa
     4801 aaatttcaat tcgcagacaa accgctggcc gtttacgaag gcgaagtgca aatcaggctg
     4861 cccttgcgta cggaagatat actttccgat actgaggttt ctgttcccat cagcgtgcga
     4921 gtgcaggcct gcgacaacga aaagtgctat gcgccggacg tcctcaagac gtggatttct
     4981 gtgcactgga agtattgttg cgatgactga gcgcatctgg atcatcgtgg ctggtgtgtt
     5041 cgtcgtggta gccgctgtat ttctgtggcg gaacaatctg tcggcgactt tcgttactgc
     5101 tacgctgggc gcggtcgcgt ggtttttgag ttatcgcgtt caattgcgcg caaagatttc
     5161 agcgaacgat catgacccga cggaaaaaga gattacttct gacactgatg aaaactagac
     5221 tgagaactgt ttgcttagtg ctgctcttga tttcttcctt catcgccgcg atgacgtcga
     5281 gtctattcgc tggcgagaag ccgccagcca cgcgcgcgac gccttccgat caaactgaag
     5341 tgcgctccgc ggtccaacac atcttcgagc aactgaaagc gggcaaatac gaagcgctct
     5401 acgattcgct gccgtcgtcc acccgcgcgc gcatgacgcg cgatcggttc gtcgctgctt
     5461 tgcagaacac tcgcaatctt taccaactcg atcggattga aattggcgcg gtgcgcgtgt
     5521 caggtgatct ggccgtcgtt gacacggtga tgtacgcgcg gatcgcccag ccctttaatg
     5581 ccgacggcaa actggtcgtg cagcagtatc tagtgcgcga agatggaagc tggcgcgtgg
     5641 cgacgggcga tcgcgcaacg atcgatcgct tcctgaaaag caatcccagt ttcgcgcgga
     5701 ggtttccgat caaacgaccg cgccctttca tcaaacagaa cggacagtgg gtcgagttcc
     5761 aaccgccagc gcgaaaacca agcacctagt cagtaccgcc tccgtaagcg ggcgggtctc
     5821 tcctcaactc gatagcaaat cttcaaacga caactgagcg tcgtcggtct gcacgccgtg
     5881 cgggctcgag atgcgcggca catccaaagc ttcgcgcaca gcgtcgagat ggaaacggat
     5941 gatgcgcggc gtcaaacgca cggaaggaat gcgccgttta tgcgccaggc gacgcacggt
     6001 ggactcgctc acctgaagaa cttcggcgag ctgcttcgca gtcagaaact cttctcggtc
     6061 ggacacggta agtctcaact ctcaagtctt aggtctcaag tcttaggacc atagaccttc
     6121 acacattgat tggttcaagc gaaagctatc gtagcgcaaa cctcacctga ctccaactct
     6181 gttcttgttt tattaagact ttaaacttga gactatttcg gtatggcctt gagcgacaat
     6241 gcgacgcgat agactgcggc accttcaact tctacgtctt tcgaagccgg ctgaacgccg
     6301 tcggctttca aagtcacgcg atactttgcc gtttcaggcg gaagccggaa aacgaactcg
     6361 cccgtctcgc ctgtgacacg cgaatcgagt ttttgcgttg agttctcgtc cacgattctg
     6421 gccagctcga cgcggacgcc gggaacgctg cggcctgatt cagtgaagac gctgccgcga
     6481 atgaacgcga tcgagccttc gtcaactgag agaacgagat cgtgcagcgc gcgagtcttg
     6541 ccggctgtca ccccaaggtc ttccaccgag ccgacgctca gtccgggctt gcgaaaggtg
     6601 agaccgtaaa caccgggtgc gatgtgagcg atttgaaagt caccatgttt gtccgtcatc
     6661 gtgcgcgtca cttcgcgctc gccctggcgc aaaatcaccg ctacacccgc aggcgagcct
     6721 ttctcaacat gcaccttgcc tttaatcgcg ccggtgtttt tgtcctgcgc gaaacatgtg
     6781 agcccgaaaa gacacatcaa agcgagcacc gcaatcaata tgttgggttt catttccgtt
     6841 tccatacaga gccaagttat cacgaaaatc agcgtgaccc aacgacgaat gaactagggc
     6901 cggagctttg aagactctcg tagcacgcgg cgttgtcccg cgcgtataat ctcactcgtt
     6961 tatgtttgtt catctcacca tcctcagaac gatcgcgctg atcgcatgcg cgattatcat
     7021 gatcgccgcg gtgcaggttc atggcttcgc ccaggacgac gctgccaaaa aagaacgccc
     7081 gcggcgcgtc ttgccgacga cgcaagagcc gcaggacgtg attaggatcg acaccgatct
     7141 cgtcccggtt gacgtgaccg tgacagatgc aaagggtcgg ctggtgcgaa acctcaagaa
     7201 ggaagatttc aaactctacg aagacggcat cgagcgcccg attgcttcat tcaacattga
     7261 aaagatcgaa ggcgcgccgc gcccggccgc gattgtattc gcgctggatc tttccggcag
     7321 catgacgccc gaagaaattg aacgcgtggc tagtgccatg cgcgaatttt cgcgacggct
     7381 gtcggagcat ccggcggtgt ttgcggtgat gacatttggc atgcacgtga aaacaattca
     7441 atcgttcacc agcgaccgcg agaaacttga gcgcgcttac gaacgcctgt cgcacgagcc
     7501 gaatggaatg tccacgcaca cttacgacgc cgttgacgac gcggtgcgca tgttggtgcg
     7561 ccacgcgccg ctggtgcgcg aacatcagct gatgaaacgc gcagtcgtcg tgatcacgga
     7621 cggctttccc gtgggcgatg ttgtttcgcc cgacaccgtg atcgaacgcg ccaacgccgc
     7681 agacacgagc gtttacgtcg tgactatgcc ttcgtacacg cacctgctgg cgtcagtcca
     7741 agtgacaccg ctgccgacac cgctggacgt cagtggactg gttgagaaaa cgggcggtcg
     7801 gagcgtttac gcaagcgaaa atgatttggg gccgttgttc cgagcaatcg ctgaggaggt
     7861 tgcatcggcc tacgtgctgg ggttttatcc gccggaagag aatcgcaaca acggcaagtt
     7921 tcacacgatt agaattgaag gtccgggtgg agtgacgttg cggcagagcc ggccgggata
     7981 tcaaagccag gcgaagtgaa tagtgatagg tgatgagtga caagacttcg cgttctgaac
     8041 tatcacttat cacctattac ctatcaccgt tcttcagtat tcgtcctcgt cttcatcgtc
     8101 gtcgagactt tcttcctcga cgatgtccag ctcgacggga tcgagtccga cgacttccag
     8161 ttgaactcca cactcttcgc aatcgacagt ctcgcctttg tccacgtcgg tatccacgtg
     8221 aacatcggca tcgcattctg gacacgttcc ggtcggcact tcttctacct ccagtgaaga
     8281 ttctgattag caagcgcggc ctaagtgccg catgatttca gcattaaagc tttcagtaag
     8341 accgccgtca atctaaccgc agcgcggcgg attttgcaat agcttttcta atcaccagcc
     8401 attagttttg gccgcgcgtg acggcgagtc actaacaggc gataaataac acgccgatgc
     8461 aacgagcgct ccgagcgttc cgctcgaatc accaattgtc gaagacgaaa ccgtagcgtt
     8521 cgccgctttc ggactccgcg gcgcggttgc cggctcgtca gtcacggtga aagaatcgcc
     8581 acgcccttca ttgacgcgca gcattctctg cgcttcttca aacgtgaaag gccgcgcgcc
     8641 gcgacgacca aacaccgcga tctgattgcc gctttcgtcc acggcgcggt cgcgatccag
     8701 agcttttgaa act
//
LOCUS       DASZZE010000107         1960 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_101133, whole genome shotgun sequence.
ACCESSION   DASZZE010000107 DASZZE010000000
VERSION     DASZZE010000107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1960)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1960)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1960
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101133"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..367
                     /locus_tag="VHD88_02140"
     CDS             <1..367
                     /locus_tag="VHD88_02140"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="S1C family serine protease"
                     /protein_id="HVS20615.1"
                     /translation="LRKPDKENAATYVVARFRLVCVCRVEGFVLKRNIPRLAVAFFVF
                     TTIQVARAQESLPDLVRRVKPSVVSVQTYDAKGEPLISGSGFFIRPGEVVTNMHVIRG
                     AHRVEIHTLEGKGRTFPVA"
     gene            379..996
                     /locus_tag="VHD88_02145"
     CDS             379..996
                     /locus_tag="VHD88_02145"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HVS20616.1"
                     /translation="MLGFGTMMVLLEGVRGEVEAVNRKLTSAHDKLELMPAWTPLTEA
                     LNRHAFHSLLSRDEAGSESEIDGCVAVIDIDNLKPINDTLGHGVGDKAIRAVARAVRS
                     LIRADDMLFRWGDDEFLVLMFKLHKDEASRRMQTLNGILERNGEQWTSAPVKITVSSG
                     VSGFESMKELGPAIEQADKAMYSSRQQIRTGKVLSDSHRMPAMSN"
     gene            complement(1123..>1960)
                     /locus_tag="VHD88_02150"
     CDS             complement(1123..>1960)
                     /locus_tag="VHD88_02150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20617.1"
                     /translation="APFARVGPDGVTYTFLRFASTTVRPISRTTGVSYSRINIFESAS
                     HSLYNGLAIQATQRLAHGFQFIASYTYSRAKDDRPDQTAVVVGADDAKIVENQTNPAG
                     DYGRSDTDLRHRFVFSPVYQWGKIKWTENPVAGALFSDYTFSTIIQFQSGLAYSALVS
                     GDPNNDGNRSNDRLPGTVRNQFTSPAVYQFDMRLTRAIRFGEKMRVQLIAEAFNIFNR
                     SNVVLVNNTFFNYSGGSSGVLTAPSAVTAFGTPRSFSSPASGATTFATPRQVQLAIKF
                     DF"
BASE COUNT          438 a          524 c          580 g          418 t
ORIGIN      
        1 tcttagaaaa cccgacaagg aaaacgcggc tacgtacgtg gtagctcgct tcaggctcgt
       61 ttgtgtttgc agagttgaag gttttgtttt gaaaagaaat atcccccgtc tcgctgtagc
      121 tttctttgta ttcaccacaa tccaggttgc tcgcgcacag gaatcacttc ccgatctggt
      181 gcgtcgcgtc aagccctcag tcgtttcggt gcagacgtat gacgcgaagg gcgagccgct
      241 gataagcggc agcggcttct tcatccgtcc cggagaagtg gttaccaata tgcatgtcat
      301 tcgcggcgcg catcgcgtcg agattcatac gctcgaaggc aagggccgaa cttttccagt
      361 cgcctgattc tggagatctt gctcggcttt ggcacgatga tggttttgct tgagggcgtg
      421 cgtggcgaag tcgaagccgt gaatcgaaag ctaacttcgg cgcatgacaa actcgagctg
      481 atgcccgcat ggaccccttt gactgaagcg ctgaatcgtc atgcctttca ttcattgctg
      541 agccgcgacg aagccggaag cgaatcggag atcgacggct gcgtggcggt gatcgacatt
      601 gataacctca agccaatcaa cgacacgctc ggacacggcg tgggcgacaa agcgatccgc
      661 gccgtggcgc gcgcggtgcg ctcgctgatt cgcgccgacg acatgctgtt tcgctggggc
      721 gacgacgagt ttctggtctt gatgttcaag cttcacaaag acgaagccag ccggcgcatg
      781 caaacattga acgggattct cgaaagaaac ggcgagcaat ggacttccgc gccagtgaag
      841 attaccgttt cttccggtgt ttccggtttc gagtcaatga aagaactcgg ccccgcaatc
      901 gagcaagccg acaaagcgat gtacagcagc cgccagcaga ttcgcaccgg caaagtatta
      961 agcgattctc accgcatgcc tgcgatgtca aattgatcct aggagtaaaa caaaaacaat
     1021 tagccacgaa aaggcgcaag gagcacaaaa cgaattcaat cgtttgcttc ttgcgccttt
     1081 tgaggctttc tcgtggctcc gtcttatccg cgccgaccgg cgtcaaaagt caaacttaat
     1141 tgccagttgt acctggcgcg gcgtagcaaa cgtggttgcg cccgacgccg gcgaagaaaa
     1201 gctgcgcggt gtgccgaagg cggtcaccgc cgaaggcgca gtcaacactc cggaggaacc
     1261 accggaatag ttgaagaaag tgttgttgac cagcacgacg ttcgagcgat tgaaaatgtt
     1321 gaaggcttca gcaatcaact ggactcgcat cttctcgccg aaacggatcg cccgcgtcag
     1381 ccgcatgtcg aactggtata ccgcgggtga cgtgaactgg ttgcgcaccg tgccaggcag
     1441 gcgatcgttc gagcggttgc catcgttgtt cggatcgcca ctcacgagtg ctgagtaagc
     1501 caggcccgac tggaactgga tgatggtcga gaaagtgtag tcgctgaaca acgcgcctgc
     1561 gaccgggttc tcagtccatt tgatcttgcc ccattgataa acgggactga agacgaaacg
     1621 atgccggagg tcggtgtccg atcttccata gtcacccgcg ggattggttt gattctcgac
     1681 gatctttgcg tcgtcggcgc cgactacgac ggctgtttga tccggccgat cgtcctttgc
     1741 tcttgaatag gtataagagg cgatgaactg aaagccgtgg gccaggcgct gggtggcctg
     1801 gatcgcaagg ccgttgtaga gcgaatgcga cgcgctctcg aagatgttga tgcggctgta
     1861 ggacacgcct gtggtgcgcg agattgggcg caccgtggtg ctcgcgaacc gcaggaaggt
     1921 gtaggtcacg ccatcaggtc cgacccgagc aaacggcgcc
//
LOCUS       DASZZE010000108         2572 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_166011, whole genome shotgun sequence.
ACCESSION   DASZZE010000108 DASZZE010000000
VERSION     DASZZE010000108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2572
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_166011"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1992
                     /locus_tag="VHD88_02155"
     CDS             <1..1992
                     /locus_tag="VHD88_02155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20618.1"
                     /translation="PVPDATPEEKPSPDAVQIKPGEPAQPQTVGQPKLKAEVVPPSTQ
                     QQPPAEHLPFVITHAGNLVFISDKPFKFAKLHPAGSKPLAEDQNFRIARDRFPSESLF
                     IYFNVALEERAKPRPSPKQTISEAEAERIRKEEEATVETEMAQPSPGEPRSPEMLPAR
                     PDEQVTATLVVAQPSPAPKPTQAQQAQMAAYSQLVQMMDLLTRGEPQWPEAVGAALTL
                     DNDSYVIRSILIGPPDAKPLPLPFVPQLLSGPAYASDAPSVLPDDTEVFVTMSVDFTR
                     TYDGMQKQAEIALKSVPQQIAAGEKRELLNPFAAFEKKAGFKIKEDLLPALGNEIAIA
                     GSLSTLAGAGVFGIPGSPRSSPKTSSNGTQDEKQKVSNAFPVLLIAVRDRDAARKLMP
                     RVLDGLGIGEANLIAQTERHDDFELVNYGGVFAYAFVGNFVIISEAATVRRVIDANLN
                     HQTLASNNSFRTSRRWQPRQSLGEIYVSPALMEGYQEEIRKPSASLDPKMRDFLLQLS
                     PTADAITYTLSNEGLGALHELHLPKNLIIAMVAGTTAAMSAMKAGSPEMNEAIAESIL
                     RMISSAEATYQATQGNGSYGSLDKLVEAKLVQKEMLDKYGYNIQLSASGNQFEATATP
                     ISYGKTGRRSFFVDQTGVIRGDDHGGAPANSADKSAQGP"
     gene            complement(2039..>2572)
                     /locus_tag="VHD88_02160"
     CDS             complement(2039..>2572)
                     /locus_tag="VHD88_02160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20619.1"
                     /translation="QLTVAEYAPRRVFVHAGVVGWKDRAILIPGLSHSGKTTLVDQLI
                     RAGATYYSDEYAVLDERGRVHPYPRPLGMRSPNSSESTKVRAEELGAKIGSKPLRVGL
                     VVSTSYKAGARWRPRQLTRGKGVLELMANTVSARSQPEMALTVLPKAIESAEILKGQR
                     GEASELVDLILANVGDL"
BASE COUNT          578 a          783 c          707 g          504 t
ORIGIN      
        1 ccggtgccgg acgcgacccc ggaagaaaag ccatcgcctg atgctgtcca gattaagccg
       61 ggtgaacctg cccaaccgca aaccgtcggt caaccaaagt tgaaagccga ggttgtgccc
      121 ccctcgacac aacaacaacc acccgctgag catttgcctt tcgtgatcac tcacgcgggt
      181 aatttggttt tcatcagcga caagcctttc aagttcgcga agctgcatcc cgcgggaagc
      241 aaaccgcttg ccgaagatca gaactttcgc atcgcgcgcg atcgcttccc gtctgagtcg
      301 ctctttatct acttcaacgt ggcgctggag gaacgggcta aaccgcggcc ttctccgaag
      361 caaacaatct ctgaagccga agccgagcgt attcgaaagg aagaagaagc gacggtcgaa
      421 acagaaatgg cgcagcccag tcccggtgag ccccgatcac cagagatgct accggcccga
      481 cccgacgagc aggttactgc tacgcttgtc gttgctcaac catcacccgc gcccaaaccc
      541 actcaagcgc agcaagcgca gatggccgct tactctcagc tcgtgcaaat gatggatttg
      601 cttacgcgcg gcgagccgca atggccggaa gcagtcggcg ccgctcttac gctcgacaat
      661 gattcgtacg tcatccgctc aattctgatc gggccgccgg acgcaaagcc cctgccgttg
      721 cctttcgttc cgcaactgct ttcgggacct gcatacgcgt ctgacgctcc atccgtgctg
      781 ccggacgaca cggaagtttt tgtcacgatg tcagtcgatt tcacacggac ctatgacgga
      841 atgcaaaagc aagccgagat tgccttgaag agcgtgccgc agcagatcgc ggccggtgaa
      901 aagcgtgaac tactcaatcc gttcgccgcg ttcgagaaga aggccggttt caagatcaag
      961 gaagacctgc tcccagcgct gggtaacgaa attgcgatcg ccggctcgct gtcaacattg
     1021 gcaggcgccg gcgtcttcgg cattccgggt tcgcctcggt cttcgcccaa gacttcatcc
     1081 aacggaacac aagacgaaaa gcagaaagta agcaacgcgt ttcccgtgct tctgatcgcc
     1141 gtcagagatc gcgatgccgc gcgaaagttg atgccgcggg tgctcgatgg tctgggtatc
     1201 ggcgaggcga acctgatcgc gcaaacggaa agacacgacg actttgagtt ggtgaattac
     1261 ggcggtgtct ttgcttatgc ttttgtgggg aacttcgtga tcatttccga agccgcgacc
     1321 gtgcgtcgcg tgatcgacgc taacctcaat caccaaacgc tcgcttccaa caattcgttt
     1381 cgaacttccc ggcgttggca accgcgccag agtctcggag agatttacgt ttcaccggcg
     1441 ttgatggaag gctatcagga ggaaattcgc aagccatcgg cgtcgctgga tccgaagatg
     1501 cgcgatttcc ttttgcagtt aagtcctact gccgatgcga tcacttacac gctctcgaac
     1561 gaagggctcg gcgcgttgca cgagctgcac ctgccgaaga atctgatcat cgcgatggtg
     1621 gccgggacga cggcggcgat gtccgcgatg aaagcaggct cacccgaaat gaacgaagcg
     1681 attgcggaga gcatcttgcg catgatctcc agcgcggaag cgacttacca ggcgacccaa
     1741 gggaacggca gctacggctc gctggataag ctggtcgaag cgaagttggt gcagaaggaa
     1801 atgctggaca agtacggcta caacattcag ctcagcgcct caggcaatca gttcgaagca
     1861 accgcgactc cgatttcgta cggcaagacc ggtcgtcgtt cattctttgt cgatcaaacc
     1921 ggcgtcattc gcggcgacga tcacggcggt gccccggcga actcggccga caagtcggct
     1981 caggggccct gacctctcac gcgctcatga cgcagatcaa atctgcgaga cctgtaatct
     2041 atagatcccc tacgttcgcc aaaatcaaat ccaccagttc gctcgcctca ccgcgctgcc
     2101 ccttgagaat ttccgccgac tcgatcgctt tcggcaagac agtcaacgcc atctcaggct
     2161 gcgaacgcgc agacacggtg ttcgccatca gctcaagcac tcccttgccg cgagtcagtt
     2221 gacgcggacg ccatcgcgcg ccggctttgt agcttgtcga tacgaccagc ccgacgcgca
     2281 aaggcttcga gccaatctta gcgccgagtt cttcggctcg aactttcgtt gattcagacg
     2341 aattcggaga ccgcatgccg agcggccgcg gataaggatg gacgcgcccg cgttcatcca
     2401 acaccgcgta ttcgtccgaa taataagttg cgcctgcgcg gatgagttgg tccaccaaag
     2461 tagtcttacc gctgtggctc aagccaggga tcaggattgc gcggtctttc caacccacga
     2521 ctcccgcatg aacgaacacg cggcgcggcg catactcggc tacagtcaat tg
//
LOCUS       DASZZE010000109         2758 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_166047, whole genome shotgun sequence.
ACCESSION   DASZZE010000109 DASZZE010000000
VERSION     DASZZE010000109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2758
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_166047"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..476
                     /locus_tag="VHD88_02165"
     CDS             <1..476
                     /locus_tag="VHD88_02165"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HVS20620.1"
                     /translation="WVFIGNKSRGLEIENLRNVHFLPAVAYDSLPNYAAGFDVCVLPW
                     DTKLAFTSYGSAIKVREYLATGKPVVISPLPEYETMSDVLRIARSGDEFLQLIDEALH
                     EQGSELARARQNAVRDGTWDARAEWVSDLIEKTLSKKGEAYLPLPLGEGRGEGRS"
     gene            570..2522
                     /gene="asnB"
                     /locus_tag="VHD88_02170"
     CDS             570..2522
                     /gene="asnB"
                     /locus_tag="VHD88_02170"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HVS20621.1"
                     /translation="MCGIAGLIGLNPEARIGAMLQTIEHRGRDDEGVWTSPAIDDEGR
                     AVCFGHRRLSIIDTSSAGHQPMLSADGRFVLILNGEIYNYRELREQLATKGHDFRTQT
                     DTEVLLAAWAEWGEDCLSRLNGMFAFALWDNQERALFLARDRVGIKPLYYAQCQKPDR
                     QGGLSSLVFASEIKSILASGLVKADLDPEALHQFLTFLWAPDPNTLFRGIKTVPPGHI
                     VTLRGDELTVRQWWDISFDAIEEGKSEAWWQEQVLETLDRVVKLEMVADVPLGSFLSG
                     GIDSSSIVAMMKHHSNGRRVGTYTIGIEAEDLRYDIIPDDVEWARRVNQQLDTDYHEI
                     MLKPQVAELLPKLVYHMDEPAIDMAIPSYLVSRAARETLRVMLSGMGGDEVFAGYPRQ
                     MAMKVAGAIDPLPDLLRRPLMKTIAHLLPGGLPGKLTAPLRNAKKFARSAALGFEARY
                     LGFQTYFNDEAKTRLYSDELRDATKGMDAYSAHRRYFSRVKNAAPLNQMLYVDLKTFL
                     PCLNLMTTDKTSMAANLEVRVPFLNQEMLELAARMPPDLKLRGLKRKYILKRAMEKVL
                     PREIVWRKKAGFGAPIRSWLRGPLQPMVNELLSAETIKRRGLFRPAEVRRVIDANLSG
                     REDYNLQVFQLLNLELWQRAFIDENC"
BASE COUNT          580 a          736 c          838 g          604 t
ORIGIN      
        1 attgggtgtt catcggaaac aagtcgcgcg gtttggagat cgagaatctg cggaacgtac
       61 atttcctgcc cgccgttgcg tacgatagtc tgccgaatta tgcagcaggg ttcgatgtgt
      121 gcgtcttgcc gtgggacacc aagctcgcgt tcacgagcta cggctcggcg atcaaagtgc
      181 gcgagtatct ggcgaccggc aagccggtag tcatctctcc gctgcctgaa tacgaaacga
      241 tgagtgacgt gctgcgaatc gcgcgcagcg gcgatgagtt tctacaattg attgatgaag
      301 cgttgcatga gcagggatcg gagctggctc gcgcacgcca gaacgcagtt cgcgacggca
      361 cctgggacgc gcgcgcggaa tgggtgagcg atttgatcga gaagacgctc tcgaagaagg
      421 gcgaggctta tctccctctc cctctgggag agggccgggg tgagggacga agttagagac
      481 gcttagacaa ttttcttttt tgttgagtgg gcgctagagc cctcacccta accctctccc
      541 agaaggagag ggaatggttg gattagatta tgtgtgggat cgccggacta atagggttga
      601 atcctgaagc gcgcatcggc gcgatgctgc aaacgattga gcatcgcggg cgcgacgatg
      661 aaggcgtgtg gacttcgccg gcgatcgacg acgaagggcg agctgtgtgt ttcggtcacc
      721 ggcgcttatc gatcatcgat accagcagcg ccgggcatca acccatgctt tccgccgacg
      781 gacgcttcgt cctgatcctg aatggcgaga tctacaacta tcgcgaactg cgggaacaac
      841 tcgcgaccaa aggtcatgac tttcgcaccc aaacagacac cgaagttctg ctcgccgcgt
      901 gggccgagtg gggcgaggat tgtctgtcgc gtttgaacgg gatgttcgcg ttcgcgcttt
      961 gggataacca agagcgcgcg ctttttttgg cgcgcgatcg cgtcggcatc aagccactat
     1021 attatgctca gtgtcagaag cccgaccgtc agggagggct ctcttcgctg gttttcgctt
     1081 ccgaaatcaa atcaatcctc gccagcggcc tcgtgaaagc cgacctcgat ccggaggcgt
     1141 tgcaccagtt cctcacgttc ctgtgggcgc cggatccaaa cacgctgttt cgcggaatca
     1201 aaaccgttcc ccccggccac atcgtgacgc tgcgcggcga tgaactgacc gtccgccaat
     1261 ggtgggacat ttcattcgac gcgattgaag aaggaaagag cgaggcgtgg tggcaagagc
     1321 aggttctgga aacgctcgat cgcgtcgtca agctcgagat ggttgcggat gtgccgctgg
     1381 gatcgtttct gtccggcgga atcgattcgt cttcaatcgt cgcgatgatg aagcatcaca
     1441 gcaacggccg acgcgttggc acgtacacga ttggaatcga agctgaggat ctgcgctacg
     1501 acataatccc tgacgatgtc gaatgggcgc gtcgcgtcaa tcaacaactc gacactgact
     1561 atcacgagat catgctcaag ccgcaggtcg cagagctttt gccgaagctg gtctatcaca
     1621 tggacgagcc ggcaatcgac atggcgattc cgagttatct ggtgtcgcgc gcggcgcgcg
     1681 agacgctgcg agtgatgctc tcagggatgg gcggcgacga agtctttgcc ggctatccgc
     1741 ggcagatggc gatgaaagtc gcgggcgcga tcgatccttt gcctgatctt ttgcgacggc
     1801 cgctgatgaa aacgatcgcg catctgctgc cgggcggctt gccgggaaaa ctgaccgcgc
     1861 ctttgcgcaa cgccaagaaa ttcgcgcgca gtgcggcgct gggttttgag gcgcgttacc
     1921 ttggctttca aacctatttc aatgatgaag cgaagacgcg tctgtactcg gacgaactgc
     1981 gcgatgcgac gaagggcatg gatgcctaca gtgcgcatcg tcgctatttt tcgcgcgtga
     2041 aaaatgccgc gccgctcaac cagatgctgt acgtcgatct gaaaacattt ctgccttgtc
     2101 tgaacttgat gacgacggac aaaacttcta tggccgcgaa tctggaagtg cgcgtgccgt
     2161 ttctcaatca ggaaatgctg gagctggcgg cgcgtatgcc gcctgatttg aaactgcgcg
     2221 gattgaaacg caaatacatt ttgaagcgcg cgatggaaaa agtgctgccg cgcgaaatcg
     2281 tctggcgcaa gaaagccggc tttggcgcgc cgattcgttc ctggctgcgc ggacctctgc
     2341 aaccgatggt gaatgagtta ttgtcagcag aaacgatcaa gcggcgcggt ctgttccggc
     2401 cagcagaggt acggcgagtc atcgacgcca atctttcggg aagggaagac tacaatctgc
     2461 aagtgtttca acttttgaat ttggaactgt ggcagcgggc ttttattgat gaaaattgtt
     2521 agcttcatgt cgttgggtgt gcagcggctt tcgcctttgc ggctttgccg ctccgatgcg
     2581 cggcaagtct ctgacttgcc gtaaagctca ctcaagtatt ttgcaggtct atgacctgcg
     2641 ccaaacgatc ctttccaagt ccacgcgcaa cggctcatcg tcgttgggac acttgctcca
     2701 atatcgcgcg ctggaccagc gatagtcagt cgcccgctca gccaattctg cgcggacc
//
LOCUS       DASZZE010000110         5628 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_281138, whole genome shotgun sequence.
ACCESSION   DASZZE010000110 DASZZE010000000
VERSION     DASZZE010000110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5628)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5628)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5628
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281138"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1872
                     /locus_tag="VHD88_02175"
     CDS             <1..1872
                     /locus_tag="VHD88_02175"
                     /inference="COORDINATES: protein motif:HMM:TIGR00353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase CcmF/NrfE family subunit"
                     /protein_id="HVS20622.1"
                     /translation="VAIAFCCLAYSFITNDFSVLNVANNSNSQLPLHYRLAATWGSHE
                     GSLLLWTFMLTIWMVAVTLFSKHLPDEMVARVLSVMAVISTGFLLFMLLTSNPFDRIL
                     PVPPDGRDLNPLLQDPAMVAHPPMLYMGYVGFSVAFAFAISALISGRLDATWARWSRP
                     WTTVAWMFLTCGIALGSFWAYYELGWGGWWFWDPVENASFMPWLVGTALIHSLAVTEK
                     RGGFKSWTVLLAIAAFSLSLLGTFLVRSGVLTSVHAFANDPKRGTFILGFLTLVIGGS
                     LALYAWRAKQVGLGSKFDLLSRESLLLSNNVLLVVAAGSVLLGTLYPLIIDALNLGKL
                     SVGPPYFNTVFVPLMAPAAFLIGVGPIARWKQAKLPELAVRLRWAFALSFLTALVLPF
                     VIGGWKWRVSLGLLLAFWIVATVVQNLWSRLRTGSGQTSFVARLKAPSRSYYGMQVAH
                     IGVAVFVAGVTVVTGYQTEKDVKMEIGDTVNAGGYEFRLNNISQLAGPNYQAVRADIQ
                     VTKNGSLVAMMSPEKRAFTASQSVTSETAIDRSVFRDLYLALGDQVGTGAWTVRVYHK
                     PLVDWIWGGALLMAIGGAFAVTDRRYALSARKQVETPAVDSPKQAAPVTAAASSAAE"
     gene            1876..2403
                     /locus_tag="VHD88_02180"
     CDS             1876..2403
                     /locus_tag="VHD88_02180"
                     /inference="COORDINATES: protein motif:HMM:TIGR00385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbE family thiol:disulfide interchange protein"
                     /protein_id="HVS20623.1"
                     /translation="MNRLFLLPLALFIALVAFLLIGLHRDPHEVPSPLINKPAPAFQL
                     PQLKAPTKTFSPQEMRGKVWLLNFWGTWCIACREEHPLLIEYAKSGAIPIYGVDYKDD
                     RATALQLLGELGDPYTLNSFDADGRVSIDYGVYGAPESYLIDRNGVIRFKQIGPITED
                     VWRDKIVPLAKQLSQ"
     gene            2468..2929
                     /locus_tag="VHD88_02185"
     CDS             2468..2929
                     /locus_tag="VHD88_02185"
                     /inference="COORDINATES: protein motif:HMM:NF015853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type biogenesis protein"
                     /protein_id="HVS20624.1"
                     /translation="MKRTVTLFTIAISFAGILIAKEARPAEDPKFEQRMQALTQQLRC
                     LVCQNETLADSQADLAEDLRQQIREQMKAGKSDQEIIGFLTQRYGDFVLYKPPVKSTT
                     YLLWFGPFVLLLAGIALLFRYIKHRRDLIRDKPLTVEEHGRAEELLRGQVG"
     gene            2942..3817
                     /gene="ccmI"
                     /locus_tag="VHD88_02190"
     CDS             2942..3817
                     /gene="ccmI"
                     /locus_tag="VHD88_02190"
                     /inference="COORDINATES: protein motif:HMM:TIGR03142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome biogenesis protein CcmI"
                     /protein_id="HVS20625.1"
                     /translation="MLWVIFALLVVLALWFVLPPLWQKGEERKRDELRAANVLVYQDQ
                     YRELEADLRNGLISEESYRQDKDELERRLLDDVAASRDLISNPASSVTMRKLAYAIGA
                     AIPVTAIALYLYVGNPKALTPQPASQSAPPFAGQQGAMTQQQIQANVAKLAQRLEQNP
                     NDAQGWIMLGRSYTAMERFSDAANAYEHATSLTTNDANVWADYAEAQAMANGQRMAGK
                     PLEAANRALQLDPKNEKALALAGSAAYEAADYQKAIDYWQKLLPLLPANSEAAKTVSD
                     QLAKARELAAGRGSR"
     gene            3910..4095
                     /locus_tag="VHD88_02195"
     CDS             3910..4095
                     /locus_tag="VHD88_02195"
                     /inference="COORDINATES: protein motif:HMM:NF018096.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1059 domain-containing protein"
                     /protein_id="HVS20626.1"
                     /translation="MSERKSIDCREHPSESGCTLRLEGTEDEVLDAAVQHAVISHGHT
                     ENPELREQIRGLLKNAE"
     gene            4307..4915
                     /locus_tag="VHD88_02200"
     CDS             4307..4915
                     /locus_tag="VHD88_02200"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HVS20627.1"
                     /translation="MSKDNLLFAVIGLLLGFIIGFMMAGFINQREASSRLTGSTQQAQ
                     ALPPNHPQVGSDPNGDPQQVFQQVQAAMKEAREQPNNFDAQVTAAKLEYQVQRFDQAI
                     EYLLKANQLRSDNFDVLAMLGVANMDATHYDAAEKWYKAALVKKPDDIPVLDGLCAVL
                     LSKGDAKAAEQAINNLAKIDPTNQDLPQFRDKLAELKSPKAK"
BASE COUNT         1237 a         1484 c         1618 g         1289 t
ORIGIN      
        1 gtagccattg cgttttgctg tctcgcatat tcattcatca caaatgattt ttcagtcttg
       61 aatgtagcca ataattccaa ttcgcagttg ccgcttcatt atcgtctcgc agcgacgtgg
      121 ggatcgcacg aaggatcgct cttgctctgg acgttcatgc tgacgatttg gatggtcgca
      181 gttacattgt tcagcaaaca ccttcctgac gaaatggtcg cgcgcgtctt aagcgtgatg
      241 gcagtgatca gcaccgggtt tttgcttttc atgctgctga catcgaatcc gttcgatcga
      301 attttgccgg tgccgcccga cggtcgcgat ttgaatccgc tgctgcagga cccggcgatg
      361 gtcgcgcatc cgccgatgct ttacatgggt tacgtgggat tctcggtcgc atttgcgttt
      421 gcgatttcgg cgctgattag cggtcggctg gatgcgacct gggcgcgctg gtcgcggccg
      481 tggactacag ttgcgtggat gtttctcacg tgtgggatcg ctttgggaag tttctgggcc
      541 tactacgaac ttggctgggg cggctggtgg ttctgggacc cggttgagaa cgcttcgttc
      601 atgccgtggc tggtcggcac cgcgctgatt cattcgctgg cggtaactga gaagcgcggc
      661 ggctttaaga gctggacagt ccttctcgcg atcgctgcat tctctttgag tttgctggga
      721 acgtttttgg ttcgttcagg agttctcaca tcagttcatg cgttcgcgaa tgatccgaag
      781 cgcggaactt tcattctcgg atttctaact ttggtgattg gcggttcact cgcgctctac
      841 gcctggcgcg caaagcaggt tggtcttgga tcgaagtttg acttgctctc gcgcgaatcg
      901 cttctgctgt ccaacaacgt gctgttggtc gtcgctgccg gctcggtctt gcttggcact
      961 ctgtatccgc taatcatcga cgcactcaac ctgggcaagc tctccgtcgg cccaccgtat
     1021 ttcaacaccg tgttcgtccc gctgatggcg ccggccgcgt ttttgattgg cgtcgggccc
     1081 atcgcacgct ggaagcaagc gaagctcccg gaactcgcgg tgcgtctgcg ctgggcgttc
     1141 gcgctgagtt tcttaactgc cttagtcctg ccctttgtta tcggcggttg gaagtggcgg
     1201 gttagtctcg gtctgttgct ggctttctgg atcgtcgcca cggtggtgca gaacctctgg
     1261 agcagactca gaaccggatc gggccagaca agttttgtcg caagattgaa agcgccatcg
     1321 cggagttact atggaatgca ggtggcgcat atcggcgtgg ccgtcttcgt tgcaggcgtg
     1381 accgtcgtca cgggttatca aactgagaaa gacgtgaaga tggaaatcgg cgacacggtg
     1441 aatgccgggg gttacgagtt tcgcctgaat aacatctcac agctagccgg acccaactat
     1501 caagcagtgc gcgccgacat tcaggtgacg aagaacggct cgctggtggc gatgatgagc
     1561 ccagagaagc gcgcgttcac ggcgtcgcaa agcgtcacgt ccgaaaccgc catcgaccgc
     1621 agcgtgtttc gtgatctcta tttggcgctt ggcgatcaag tcggcaccgg tgcgtggaca
     1681 gtgcgcgtct atcacaagcc tttggtggat tggatctggg gcggcgcgtt gctgatggcc
     1741 atcggtggcg cgtttgccgt gactgatcgt cgctatgcgt tgtccgcgcg caagcaagtt
     1801 gagacgcctg ccgtcgatag ccccaagcag gcggccccgg tgacagcggc agcatcctcg
     1861 gcagcagagt aaacaatgaa tcgtcttttc cttttaccgc tggctctctt catcgcgctg
     1921 gtcgcctttc tgctgattgg cctgcatcgc gatccgcacg aagtgccttc gccgctgatc
     1981 aacaaaccgg cgcccgcttt tcagttgccg caactgaaag caccgactaa gacattttct
     2041 ccgcaggaaa tgcgcggcaa agtatggctg ttgaattttt gggggacgtg gtgcatcgcg
     2101 tgtcgcgaag aacatccttt gctgattgag tacgcgaagt cgggcgctat tcccatttac
     2161 ggagtggatt ataaggatga tcgtgcgaca gcgctgcaat tgctcggtga actcggcgat
     2221 ccgtacacgc tgaactcatt tgatgccgat ggccgcgtgt cgatcgacta tggtgtttac
     2281 ggcgcgcccg agagttactt gatcgatcgc aacggcgtca ttcgattcaa acagatcggc
     2341 ccgatcaccg aagacgtgtg gcgagataag attgttccgc tcgcaaaaca acttagccaa
     2401 tgaagcgctg ggaacgtaga tgtagcgcgg acatccttgt ccgcatgcgc gcgtagcgcg
     2461 aactgggatg aaacgcaccg tcacactttt cactatagcg atttcgttcg cggggattct
     2521 gatcgcgaag gaagcgcggc ctgccgaaga tccaaaattc gagcaacgca tgcaggcatt
     2581 gacgcagcag ttgcgttgcc tcgtttgcca gaacgaaacg ctcgctgatt cgcaagccga
     2641 tctcgccgaa gacctgcgtc agcaaattcg cgaacagatg aaagccggaa agagcgatca
     2701 agagatcatc ggatttctga cgcagcgcta tggtgatttt gtcttataca aaccgccggt
     2761 aaaatcgact acatacctgc tttggttcgg cccattcgtg ctcttgctgg cgggcattgc
     2821 tctgctcttt cgatatatca aacatcggcg agacctgatt cgcgacaaac ccttgaccgt
     2881 cgaagaacac gggcgggctg aagaacttct ccgaggccag gttggatagc ttgcgatgct
     2941 aatgttgtgg gtaatattcg cgttgctcgt cgtgttggcg ttgtggttcg tcctgccgcc
     3001 gctctggcaa aagggtgagg agcgaaagcg tgacgaactt cgcgcggcga acgtgctggt
     3061 ctatcaggat cagtatcggg aactcgaagc ggatctgcgc aatgggctga ttagcgaaga
     3121 aagttatcga caggataagg acgaactcga gcgtcgcttg ctcgatgatg tcgcggcaag
     3181 tcgcgacctg atttccaacc cagcttcctc agtcacgatg cggaaacttg cttacgcgat
     3241 cggcgctgcg attcccgtca ccgcgattgc tctctatctg tacgttggaa atcctaaagc
     3301 gctcacgccg cagccggcat cgcaaagtgc gccgccattt gccggtcagc aaggcgcgat
     3361 gacgcagcag cagatccaag cgaacgtcgc aaagctggcc cagcggctcg agcagaatcc
     3421 gaatgacgcg caaggctgga tcatgctcgg acgaagctac acagcgatgg agcgtttctc
     3481 tgacgccgcg aacgcttacg agcacgccac ctcgctcacc accaacgacg caaacgtttg
     3541 ggccgattac gcggaagctc aggcgatggc caacggccaa cgaatggccg gcaagccgct
     3601 tgaggcggcg aatcgagctt tgcagttgga tccgaaaaac gaaaaggcgc tggcgcttgc
     3661 cggtagcgct gcctacgaag cggccgatta tcaaaaggcg atcgattatt ggcaaaagct
     3721 tctgccgttg ttgcccgcga attccgaagc cgcgaagact gtttcggatc aacttgcgaa
     3781 ggcgcgggag ttggccgctg gtcgcggttc gcgataaact ttccagagtt tagagttcaa
     3841 tcttcagatt gttgtcttcg gatcgaacaa gctaaagctt gaactctgaa cgcgaaaaag
     3901 gagaacgaaa tgtcagagag aaaatcgatt gattgccgcg agcatccgag cgagagtggc
     3961 tgcacgctga gactcgaagg caccgaagac gaagtgctcg atgccgccgt gcagcacgct
     4021 gtcatcagcc acggtcacac ggaaaatcca gagctgcgcg aacagattcg cggactgctc
     4081 aagaatgcgg agtaataatc tttggagtgc gccgactgcg gcgccttgga ttggttccct
     4141 ctccattggg agaggggtta ggggagaggg actagcgcgc ataagccctc accccaaccc
     4201 tcccccaggt gggggaggga gtcagcaaat ccaaagcggc gtagcgctcg gcttaccgtc
     4261 gcacgccaaa tctgcgcctt gaaatgactt acctgccata aagataatga gcaaagacaa
     4321 tctcctcttc gccgtcatag gattattgct gggctttatc attggattca tgatggccgg
     4381 ttttattaat cagcgcgaag cgagttcgcg cttgacgggt tcaacgcagc aagctcaagc
     4441 gctgccgcca aatcatccac aagttggcag tgatccaaac ggggatccgc agcaggtctt
     4501 ccagcaagtg caagccgcaa tgaaggaggc tcgcgagcaa ccgaataact ttgacgcgca
     4561 agtcaccgcc gccaaacttg aatatcaagt gcagcgattc gatcaggcga tcgagtattt
     4621 gctaaaggct aaccagcttc gttctgataa tttcgatgtg ctcgcgatgt tgggtgtggc
     4681 gaacatggat gcgacgcact atgatgccgc tgaaaaatgg tacaaggccg ctttggtaaa
     4741 gaagcctgac gatattccag tgctggatgg gctttgcgcg gtgctgctaa gcaagggcga
     4801 cgcaaaagcc gcggagcaag caatcaacaa tctcgcgaaa atcgatccta caaatcagga
     4861 cctgccgcag tttcgagata agctggccga gttgaaatcg ccgaaagcga aatagactct
     4921 agcaggatgc taaagaaggc aaaacaagcc acagaggcac ggagtcacgg aggcacggag
     4981 agggtgcaat taagagtggg acttactgtc attcacacac ggctttagcc gggtgactgg
     5041 aagcaaacca cgactgtctc ctaaccgttt caacggtttt cgcttgcatc aagctcaagc
     5101 tcactgtagt tcgccaaatt gctgcgtcgg agtggaccac agttcatgcg ctgattgatc
     5161 ttcctactaa tctaacgatc gaacaggtaa tacacctctg caaaggcggc tcttcacagg
     5221 aggccaacct ttgccgaaga atacgaactg ttcgtagaga agtacggcct cgagtggcgt
     5281 gacgaggaaa accgttgaaa cggttaactg aaattctgct tgcctaccac gtccacccgg
     5341 ttgaaaccgg gtgtgaatga gaacaggtta tagttagtcc cacttttaat tacactctca
     5401 cggagaaaac gccagtcaga aatgcgaaga aacagtttct tttttgctat tatcgttctc
     5461 tgtgcctcag tgtctctgcg gctaagcctg gtttttcagc aacctgctac ggctcgatcg
     5521 ccatcctggc tacgtcagac atgaggacgc gttcgatgcg tccagtcttg agcacgatca
     5581 cgataacgcc gccctctatt actatgcggc gcacggtcgt catggggc
//
LOCUS       DASZZE010000111         1537 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_51727, whole genome shotgun sequence.
ACCESSION   DASZZE010000111 DASZZE010000000
VERSION     DASZZE010000111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1537)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1537
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_51727"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..593
                     /locus_tag="VHD88_02205"
     CDS             <1..593
                     /locus_tag="VHD88_02205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20628.1"
                     /translation="LAIHEDDLIVATHGRGFWVLDDISALRQIDDEVAKARAYLFRPA
                     DATNITPGSDNGTPMPRDEPLAENPPYGAIIDYYLNSASSETVTLEILDPAGDVIRRY
                     SSEDKPTPVNPDTLNIPAFWVRTPEPLSAAAGMHRWIWDLRPTPPRRTGGGGGGGGFG
                     GRGVSAVLPGTYIVRLAVGGKSYTQPLFVKMDPRAK"
     gene            1071..>1537
                     /locus_tag="VHD88_02210"
     CDS             1071..>1537
                     /locus_tag="VHD88_02210"
                     /inference="COORDINATES: protein motif:HMM:NF024923.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-binding protein"
                     /protein_id="HVS20629.1"
                     /translation="MGYDNEWSSRLRVLCLAGLSAALFTGCSNKAAQQGFERPPAPVS
                     VTEAITQDVPTYLDAIGKTVAREVVSIQPQVSGRITKIHFTDGANVKKGDLLFTIDTR
                     LFEANLRQAQANVSRDLALKKQAEANLARDIAQAKWGEVQVRRYGELVASGVVP"
BASE COUNT          339 a          429 c          441 g          328 t
ORIGIN      
        1 atctggcgat tcacgaagac gatctgatcg tcgccaccca cgggcgcggc ttttgggtgc
       61 tcgacgacat cagcgcgctg cgtcaaatcg atgacgaagt cgcgaaggcc cgcgcttatc
      121 ttttcagacc agcggacgcc acaaacatca cgcccggcag cgacaacggt acgccgatgc
      181 ctcgcgatga accgttggct gagaatcctc cttacggcgc aattattgat tactatttga
      241 attccgcttc atctgaaacg gtgacgctcg aaattctcga tcccgcaggc gacgtgattc
      301 gtcgttattc aagcgaagac aagccgactc cggtgaatcc cgacacgctc aacattcccg
      361 cgttctgggt gcgcacgcct gaaccgctgt ctgccgcagc gggcatgcat cgatggattt
      421 gggatctgcg tcccacgcca ccgcgaagga ccggcggagg tggcggcgga ggcggcttcg
      481 gcggtcgcgg agtttccgcg gtgctgcccg ggacttacat cgtgaggttg gccgtcggcg
      541 ggaaaagtta cactcaaccg cttttcgtta agatggatcc gcgggccaag taggctccag
      601 cttcggttct cgtaaccgtc ggcacgtgcc gccgtctcta agtagtagat cgatcggaag
      661 aacgcgagag gagactgaac aatgctaacc acaaagacct tcctggtcgc tttctttctc
      721 ggcgccatgc tatttcaagg aaactcgatc tcaagggtca gcaatcgtcc aacgttcgcg
      781 aattggtcaa gcgaatccga gccgcgcttg ggctaatcga tcccaccggt tcacactgac
      841 atagcgagat cacaatcaca ctgattggaa gtgatggccc aacaactctt atcttccctg
      901 gctctgcggt gaactcctcc aagttggggt cattctattt gatcaagccc ctctttgacg
      961 gcccaggttt tgaaacccag ctcatggcat tgctgcgttt gctagatccg tgtcaggaga
     1021 ctgataatcg ctgagtctcc gaaaaaaact aaggctagag aaaatacgat atgggatacg
     1081 acaacgagtg gagttcgcgc ttacgggtgc tttgcttggc cggattgtcg gctgcgttgt
     1141 ttactggctg ttcgaacaag gcggcgcagc aaggttttga acgtccgccg gcgccggttt
     1201 cggtgaccga ggcgatcacg caagacgtgc caacgtatct ggacgcgatc ggcaagacgg
     1261 tcgcacgcga agtggtttcc atccagccgc aagtctccgg gcgcatcact aagattcatt
     1321 tcactgacgg cgccaacgtg aagaagggcg acttgctgtt cacgatcgac acgcgactct
     1381 tcgaagcgaa tctgcgccag gcgcaggcca acgtgtcgag agacttggct ctgaagaagc
     1441 aggctgaagc gaatctcgcc agggacatcg ctcaagctaa atggggtgaa gttcaagtca
     1501 ggcgttacgg cgagctggtc gcaagcggag tagttcc
//
LOCUS       DASZZE010000112         2591 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_230163, whole genome shotgun sequence.
ACCESSION   DASZZE010000112 DASZZE010000000
VERSION     DASZZE010000112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2591)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2591)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2591
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230163"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..287
                     /locus_tag="VHD88_02215"
     CDS             <1..287
                     /locus_tag="VHD88_02215"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HVS20630.1"
                     /translation="RLVELCAGNPARILSLENHGTLRAGARADLTMLDPELTWTFDAS
                     QSKSKSRNTPFDGYKFHGGAVATIIAGRIVHLHQDYTRIIEPKQTAARVR"
     gene            complement(290..>2591)
                     /locus_tag="VHD88_02220"
     CDS             complement(290..>2591)
                     /locus_tag="VHD88_02220"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HVS20631.1"
                     /translation="APGTYTLHIIKEGFELFNRTNVSVSDNSESELVVVLAIPAVTET
                     VSVAAPAEASTSVAAGSTLAAGSVKRETLRSLPLATARIDEALPLIPGVIRSAKGELA
                     IKGATEQQSALLVSGVNASDPATGNFRLNLPIDSVEAVQVFQHPYTGEYGKFIGGLTR
                     IETRRGGDRWHFELNDFLPDLRFKGGKLVGIAEDQPRLNFNGPLIKDRLYLSQSATYT
                     IAKRPVRGLTYPDNETKTESQSYFSQIDVILNGHHTQSFTLGYFPERVQYVGLDFFTP
                     QPTTPNYHQRDYSFSARDHYALSTGLLESVFSFKRFDADIWGQGNAPQAFTPTGQQGN
                     YFATLDRRSARIEFLEVYTSPKIEMFGGSHEVKAGFDFNHVSDQLQYAARPVRVVRAD
                     GSLAELIEFGPRPSRRIPAKNNEYSAFVQDRWLVKPNFSVDLGLRFEDQRIADENNLA
                     PRAGVAWSPSGSDRTVIRGGVGMFYDKVPLNIRGFSRYPRRTVTSYALDGLTITNQVE
                     FRNVLVDSKPVASLDFRHSDRNAGFVPLNLTWNIQLDQSITPRILFRANYINSSTKHI
                     YIINPESDFNGISANVLRSAGHATYRALELTSRFNFKKDDQIYVSYVRSRSRGDLNDF
                     NSYFGDLGAPIIRPNQYSNLAFDVPNRLIAWGKVSLPQKASISPIFEWRSGFPFSVRD
                     DQQNFVGVRNSDLTRFSRFLSLDVELAKEFQLTKKYGLRLSVLGFNLTNHFNPRDVHS
                     NIADRQFGEFFASYRRYFTGGFDVIF"
BASE COUNT          586 a          690 c          761 g          554 t
ORIGIN      
        1 aacggctggt ggaactctgc gcaggcaatc ccgcgcgaat tctcagtctc gaaaatcacg
       61 gcacattgcg cgcgggcgcg cgcgccgacc tgacgatgct agatcccgaa cttacgtgga
      121 cgtttgacgc ttcgcaatcg aaatcaaaga gtcgcaacac gccattcgac ggttacaagt
      181 ttcatggcgg cgcggtcgcg acgatcatag ccggccgcat cgtccatctt catcaggact
      241 acacgcgcat cattgagcca aagcaaaccg ctgcccgcgt gcgataactt cagaaaatga
      301 cgtcgaatcc gccggtaaaa taacggcgat aagaggcgaa gaactcgccg aattgtcggt
      361 cggcgatgtt ggagtgaacg tcgcgtggat tgaagtggtt ggtgagattg aagccgagca
      421 ccgagaggcg caaaccgtac ttcttcgtga gctggaactc tttcgcgagt tccacgtcga
      481 gcgaaagaaa gcgcgagaac cgtgtcagat cagagtttct gactccgaca aagttctgct
      541 gatcgtcgcg caccgaaaat ggaaagccgc tgcgccattc aaagatcggc gagatgctgg
      601 ccttctgcgg cagtgacacc ttgccccagg caatcaaacg gttcggaacg tcaaaggcca
      661 gattcgaata ttgattcggt ctgatgatcg gcgcgcccag gtcgccgaag tagctattga
      721 agtcgttcag gtcgccacga gaccgcgatc tcacgtacga gacataaatc tggtcgtcct
      781 ttttgaaatt aaaacgcgag gtcagttcca gcgcgcgata agtagcatga cccgccgagc
      841 gcaggacatt tgcgcttatg ccgttaaaat ctgattcggg gttgattatg taaatgtgct
      901 ttgtgctgct gttaatgtag ttggcccgga aaagaatgcg cggcgtgatc gactggtcca
      961 actggatgtt ccaggtgagg ttcaacggga cgaaaccagc gtttctgtca gagtgccgaa
     1021 aatcgagcga cgcaaccggc ttggaatcta ccagaacgtt cctgaattca acttgatttg
     1081 tgatcgtcaa gccgtccagc gcatagctgg tgacggtgcg cctcgggtat cgcgagaagc
     1141 cgcgtatgtt aagcggcacc ttgtcgtaaa acatgccgac gccgccgcgg atcactgtgc
     1201 ggtccgagcc cgacggcgac caggcaacac cggcgcgcgg cgcgagattg ttttcgtcgg
     1261 caatacgctg atcctcgaat cttaatccca gatcgacgct aaagtttggc tttaccaacc
     1321 aacgatcctg cacaaaggcg ctgtactcgt tgttctttgc cggaatccgg cgcgacggtc
     1381 gcgggccaaa ttcaatcaac tcagccaacg aaccatccgc gcgtacgacc cgaacggggc
     1441 gagccgcgta ttgaagctga tcgcttacgt gattgaaatc aaagccagcc ttgacctcat
     1501 gcgatcctcc gaacatctca attttcggcg aagtgtaaac ctcgaggaac tcaatccgcg
     1561 ccgagcgccg atcgagagtt gcaaagtagt tgccctgttg tcctgtcggc gtgaacgctt
     1621 gtggcgcgtt gccctggccc cagatgtcgg cgtcaaagcg cttgaacgaa aacactgact
     1681 caagcaaacc ggtgctgagc gcgtagtgat cgcgtgcact gaatgaataa tcgcgctggt
     1741 gataattcgg agttgtcggc tgcggggtga aaaagtcgag gccgacatac tgaacgcgct
     1801 cgggaaaata gccgagcgtg aaggattgcg tgtgatggcc attcaggatg acatcaatct
     1861 gggaaaagta gctttgggat tccgtctttg tttcgttgtc gggatacgtc agacccctga
     1921 ccggacgctt ggcaatcgtg taggtcgccg actgtgaaag atacaagcga tccttgatga
     1981 gggggccgtt gaaattcagt cgcggttgat cttcagcgat gccgactagc ttgccgccct
     2041 tgaaacgcag gtcgggcaaa aagtcgttaa gttcgaagtg ccagcggtcg cctccgcgtc
     2101 tggtctcaat gcgggtcagg ccgccgatga actttccata ctcgccggtg tacggatgtt
     2161 gaaagacctg cacagcctcg accgagtcga ttggtagatt caagcggaag tttccggtgg
     2221 ccggatcact ggcgttgact ccgctgacga gcagcgcgct ttgctgttca gtagctccct
     2281 tgatggcgag ttcgcctttg gcggagcgaa tgactccggg aatcagcggc agcgcctcgt
     2341 caatccgcgc agtcgccaat ggcagcgagc gcagagtctc gcgcttgacg ctgcccgcag
     2401 ccaacgtgga cccggcggcg acgctggttg aggcttcggc gggcgccgca actgacactg
     2461 tttccgtaac ggcaggaatc gcgagcacaa caacgagttc gctttcggag ttgtcgctaa
     2521 cggagacgtt ggttctgttg aagagttcga atccttcctt gataatgtgt agcgtgtagg
     2581 ttcccggtgc g
//
LOCUS       DASZZE010000113         2728 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_199649, whole genome shotgun sequence.
ACCESSION   DASZZE010000113 DASZZE010000000
VERSION     DASZZE010000113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2728)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2728)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2728
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_199649"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..224)
                     /locus_tag="VHD88_02225"
     CDS             complement(<1..224)
                     /locus_tag="VHD88_02225"
                     /inference="COORDINATES: protein motif:HMM:NF037181.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20632.1"
                     /translation="MPKQSNTTFICQSCGFQSRKWLGKCPECGEWNSLVEERVVTTKK
                     GAGRNGFRLHEPKAVAYSEIESQDDVRISSG"
     gene            complement(249..569)
                     /locus_tag="VHD88_02230"
     CDS             complement(249..569)
                     /locus_tag="VHD88_02230"
                     /inference="COORDINATES: protein motif:HMM:NF015893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC/Spx/MgsR family protein"
                     /protein_id="HVS20633.1"
                     /translation="MDKLLRESGVAFEKVNYYLAPLGEKKLRELIKKLGIKPRELLRT
                     SEGIYRELGLGKKDFSDDQIVALMVKHPDLIQRPIVERGARAVLGRPTENVKALLSEA
                     SRLQ"
     gene            complement(872..2140)
                     /locus_tag="VHD88_02235"
     CDS             complement(872..2140)
                     /locus_tag="VHD88_02235"
                     /EC_number="1.4.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase"
                     /protein_id="HVS20634.1"
                     /translation="MATAPAVKEELNPFEIAKQQFDRAADYLELEESMRAVLRTTKRQ
                     LIVSIPVKMDGGETKVFEGYRVQHNIARGPAKGGIRYHPNVTLDEVKALASWMTWKCA
                     TVNIPYGGGKGGVVCDPKSLSKSELERLTRRYAFEIAPIIGPDRDIPAPDVYTDSQTM
                     AWIMDTISMVRGHTELGVVTGKPLSLGGSQGRHEATARGALYALRQACKVRGMDLKGA
                     RVAVQGFGNAGSIIARLVAEDGARVVAACDSKSGVYSATGLDIQAALKRKEETGALYG
                     LENAKEIAPNDVLEVDCDILCPSALENSITMANVGRVKAKIIAELANGPTTPGADRVF
                     EDEGVLLIPDILCNAGGVTVSYYEWVQDQYSFFWSESRINQTLEDTMGDAFQKVHQTA
                     QRYDTDMRTGAYILAIDRVAEATRVRGIFP"
     gene            2391..>2728
                     /locus_tag="VHD88_02240"
     CDS             2391..>2728
                     /locus_tag="VHD88_02240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20635.1"
                     /translation="MFNNLIESDSHRKDFKRRSSFFLVTTAAYALILFAAGVASIYAY
                     DARLESQNSDLTVLSWVPPVKTITPADPPRPTRPIRRSAPSNAPVDPHITVPERTNPV
                     ASVADPTKTP"
BASE COUNT          560 a          833 c          718 g          617 t
ORIGIN      
        1 cccgacgaga tgcgcacgtc atcctgcgat tcgatctcgc tgtaggccac cgccttcggt
       61 tcatgcagac ggaatccatt gcggcccgcg ccttttttcg tggtgacgac gcgttcctcg
      121 accagcgaat tccactcgcc gcattcaggg cacttgccga gccacttgcg cgattgaaag
      181 ccgcagctct ggcagatgaa agttgtgttt gattgttttg gcaacggcct attgctcgtg
      241 cagtaccttt attgtaggcg cgacgcctct gacaaaagag ctttcacatt ctcggtcggt
      301 cgtcccagca ccgcacgggc gccgcgctcg acgatcggtc gttgaatcaa atcgggatgc
      361 ttaaccatta acgcgacgat ctgatcatcg ctgaagtctt tcttacccaa accaagctcc
      421 cgatagattc cttcacttgt tcgcaaaagc tcacgcggct tgatgcccag cttcttgatt
      481 agctcgcgca gtttcttctc gcctaatggc gcgagataat agttcacttt ctcaaacgcg
      541 acgccactct cacggagcaa cttgtccatt tcgcgacact tcgttcaagt cggcttttcg
      601 tagacggtga tgttgtcttt cataacttct cagctcctag caggctgctg aaaaaccgta
      661 tttggagtgc ggcggcaagc gcagtgcgac gccgctttgg attcgcaggt gccgaaatgc
      721 gaagaaatcc aaagcgccgc cgttgtcggc gcactccaaa tttcgcgctc tcgccatcgg
      781 taaagacttt ttcagcagcc tgctagagct tagagcttag taattagcgc tcagtctaag
      841 atcgaagctc taaaatctaa gctcgctttt tctacgggaa tatccctcgc acacgcgtcg
      901 cttccgctac gcgatcgatc gccaggatgt aagcgccggt gcgcatgtcg gtgtcgtagc
      961 gctgcgccgt ctgatgcacc ttctggaatg cgtcgcccat cgtgtcttcc agcgtctggt
     1021 taattcgcga ctcgctccag aaaaacgagt actgatcctg cacccattcg taatagctga
     1081 ccgtcacgcc gccggcgtta caaaggatgt caggaatcag caggacgccc tcgtcttcga
     1141 acacgcgatc cgcgccagga gttgtcgggc cgttggccaa ctccgcgatg atcttcgctt
     1201 tcactcgccc aacatttgcc atcgtgatgc tgttttcgag cgccgaagga cacaggatgt
     1261 cgcaatcaac ttcgagcaca tcgttgggcg caatctcttt cgcattctcc agaccgtaca
     1321 gcgcacccgt ttcttctttg cgtttcagcg ccgcctgtat gtcgagacca gtcgcggaat
     1381 aaactccgct cttcgagtca caggccgcga ccacgcgcgc gccatcttcc gcgacgagac
     1441 gcgcgatgat cgaacctgca ttgccaaagc cttgcactgc tacccgcgcg cctttcaaat
     1501 ccatcccgcg cactttgcat gcttgacgca aagcgtaaag cgcgccgcgt gcagtcgctt
     1561 cgtgccggcc ctgcgagcct cccagcgaga gcggtttgcc ggtgacgacg cccaactcag
     1621 tgtggccgcg caccattgaa atggtgtcca tgatccaggc catcgtttgt gagtcggtgt
     1681 aaacatcagg agcgggaatg tctcggtcag gaccaatgat cggcgcaatc tcgaaagcat
     1741 aacggcgcgt cagacgctcc agctcgctct ttgaaaggct cttcggatcg caaacgaccc
     1801 cgcctttgcc gccgccgtag gggatgttga cagtagcgca cttccaggtc atccacgaag
     1861 cgagcgcctt aacttcatcg agcgtcacgt tcgggtgata gcgtatgccg cctttggctg
     1921 gaccgcgcgc gatgttgtgc tgcacgcgat agccttcaaa aactttcgtc tctccgccgt
     1981 ccatcttgac gggaatcgaa acgatgagtt gccgcttggt ggtcctgagc acggcgcgca
     2041 tcgactcttc gagttccaga tagtcggccg cgcgatcgaa ttgctgtttg gcgatttcaa
     2101 atggatttag ttcttccttc accgctgggg cagtagccat tgatcgttct ccctgaaaag
     2161 caagtagtaa ggcggcgcta tcgtaaagga attgggcaga actgtacaaa tgcggcgaac
     2221 caaaggcggg acagaagcgc gaccccgtgg tccccggccg ggcagccccg ctcgcgtgag
     2281 gcggtgaggg agagcgcttg gtttcgaatt gcgggaacaa gaccggacct tgcgttgtct
     2341 aacacggcag cttcctcgac ccgacggcac cggcagcaga ggagcagaag atgtttaata
     2401 atctgattga gtccgactcg caccgcaaag atttcaaacg ccgcagttca ttctttcttg
     2461 tcaccaccgc agcttacgcg ctgattcttt ttgccgccgg cgtcgccagc atctacgcct
     2521 acgacgcgcg gctggaaagc cagaactcag acttgacggt gttgtcatgg gtgccgccgg
     2581 ttaagacaat caccccagcg gatccgcccc gcccaactcg gccgattcgc aggtcggctc
     2641 catcgaatgc ccccgtcgac ccgcacataa cagttccaga acgaacaaat cctgtcgcct
     2701 cagttgctga tccaaccaag acgcccga
//
LOCUS       DASZZE010000114         6767 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_101280, whole genome shotgun sequence.
ACCESSION   DASZZE010000114 DASZZE010000000
VERSION     DASZZE010000114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6767)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6767)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6767
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101280"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2250
                     /locus_tag="VHD88_02245"
     CDS             <1..2250
                     /locus_tag="VHD88_02245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20636.1"
                     /translation="TYFLTAGYAVSLDGGETTRGGGGGGGFAGSPGGDNHDIWIDPTD
                     PNRMAVANDSGVSLSVNRGRTWQRIQFPNGQIYHVTTDNQIPYYVYGNRQDGPSYRGP
                     SRTGGGGFGGGGGGGGGVIPRSAWIGVAGGESGWATPDPVDNNIIWSSASGSGSVGGI
                     VEVFNLKTGQARNVEVWPDQASGSIAADLKYRFVWTMPLTISPHDHNKVYVGSQFVHV
                     TTDGGNSWQVISPDLTLNDKSKQGFSGGLTGDNIGVEYAGVVFAIAESPKEAGVIWAG
                     TNDGLVQITRDGGKNWTNVTKNIPNMLPWGTVSNIEASRYNAGTAYITVDGHQVNNRD
                     PFIYKTTDYGRTWKAITNGIPHTMLSYAHCVREDPVRQGLLYVGTEGGLFVSYDDGAN
                     WQPLQNNLPHAPVYWITIQEHFNDLVISTYGRGFWILDDITPIQQMTPEVLNSSAHLF
                     TVHPAYRFRGITVPYASSDDPVAGQNPPYGASINYYLKATPKADPSIKIVDAEGKTVR
                     TIRGTRSAGINRVWWDLRTDQSKEVRLHTSPAYAPEVRVNAEGWRPLPEGGRMNVLVP
                     PGTYTVKLSVDSQEFSQPLVVRKDPNAGGSDDDVQKQTAMLFELRKDLESAADMVNQI
                     ESICAQLENLKGVLRGNADVRTAADDLDKKLIDIEDNLIQRKFTGQGQDTTRFPPKLI
                     SKIAYLGSGVNGGDYPPNTQQKEVQGMFEAQLSNLRKRLDDVVGTDLGNFNRMLRDKN
                     IGNVIAAGQ"
     gene            2477..3895
                     /locus_tag="VHD88_02250"
     CDS             2477..3895
                     /locus_tag="VHD88_02250"
                     /inference="COORDINATES: protein motif:HMM:NF027232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20637.1"
                     /translation="MPISTFARVRTGSGSDRVGSAFSLSVFAQDQNGGQETIARQQPS
                     PEVQKPVEAKKPDEEKPEDESKPRDPLATPTFNGLRLRSIGPAFTSGRISGIAVDPNS
                     PSHYFVSAASGGVWKTLNAGITWTPVFDREGSYSIGCVVLDPKNPLTVWVGTGENNSQ
                     RSVSYGNGVYRSDDGGKTWKNVGLKTSEHIGRIAIDPKDSNIVYVAAQGPLWGPGGDR
                     GLYKTTDGGKAWKQILKISENTGVTDVAIDPRDPDTVYAASYQRRRHMWTLIDGGPES
                     ALYKSTDAGATWNKLRAGLPTTEMGRIGLAISPVDPNVVYATIEAADRKGGIFRSNDR
                     GGSWEKRNEFDAGAMYYARIVADPKDVDRIYVMNVFLMVSDDGGRTLRRLGEKSKHVD
                     NHEIWIDPNNTDHYLVGCDGGVYESYDRGANWDFKRNLPVTQFYDVTTDNAAPFYNCL
                     WRRAGQFRLWRPVAYAQCVRHR"
     gene            4026..5639
                     /locus_tag="VHD88_02255"
     CDS             4026..5639
                     /locus_tag="VHD88_02255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20638.1"
                     /translation="MGIQPQVGRGEDPLRWNWDSPFIISPHSHTRLYFAADKLFRSDD
                     RGDSWQPISGQLSRGLDRDKLQVMGKVWSIDAVAKNASTAFFGNASALAESPRKEGLI
                     YVGTDDGLIQITEDGGKNWRKVEKLPDVPELADVSRIVASNTDANTAYVAFENRQNAD
                     FKPYLLKTTDAGRTWVSIKGNLPSNHPVWGIAEDHVNPNLLFVGTEFGLFFTIDGGQK
                     WVQLKGGLPTIQVRDLAIQKRENDLVVGTFGRGFYILDNYTALRSLKPETLKQDAVLF
                     PVKDALMYIQAQPIGGRGKSFQGESYYTAENPPFGATFTYYLKDALKTKKEKRQEAEK
                     DVAKKGAALSIPNRSDLTAEEEEEAPAIIFTVTDATGHVVSRLTGPITAGIQRVSWDL
                     RYPPASLPPPPNPETEDPFNEGPAGPLVMPGTYKVSVAKRTDGVITSLSQPQEFQVKV
                     EGQENMSASDRAALVEFQQKTARLQRAVSGALEAANALKPRLAAIRRALLETPSAGSR
                     CWLMLRHWTNARTKCCELCVVTTPCARAT"
     gene            5693..5881
                     /locus_tag="VHD88_02260"
     CDS             5693..5881
                     /locus_tag="VHD88_02260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20639.1"
                     /translation="MSTARPTQTQMNQYAAAAQDFETTLTQLRQLIEGDLMRLEKQME
                     AAGAPWTPGRIPEWKPEK"
     gene            6175..6492
                     /locus_tag="VHD88_02265"
     CDS             6175..6492
                     /locus_tag="VHD88_02265"
                     /inference="COORDINATES: protein motif:HMM:NF013921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HVS20640.1"
                     /translation="MQAKGVIVHAIGGTETHVHMAVSIPPTLVIADTIGKLKGSSSHY
                     VNHELVNRKLLDWQTGYGVVSFGTKDLEWVVNYIRNQKQHHCKGRIVDRLERINNDDD
                     DDG"
BASE COUNT         1593 a         1868 c         1986 g         1320 t
ORIGIN      
        1 acttacttcc tgacggcggg ttacgctgtc tcactcgacg gtggagaaac cacgcgcggc
       61 ggcggcggcg gcggtggttt tgccggtagt cccggcggcg acaatcacga catttggatc
      121 gatccgaccg atccaaatcg catggccgtg gcaaatgaca gcggcgtcag tctatcagta
      181 aatcgcggtc gcacctggca aagaatacaa ttcccgaacg ggcagattta tcacgtcact
      241 actgacaatc agattcctta ctacgtttac ggcaaccggc aggacggccc atcgtatcgc
      301 ggcccgagcc gcaccggcgg cggtggtttc ggtggcggtg gtggtggcgg tggcggagtg
      361 attccgcgta gcgcatggat tggagttgcc ggcggcgaga gtggttgggc cacacccgat
      421 ccggtcgata acaacatcat ctggtctagc gcttcgggtt ctggcagcgt cggcggcatc
      481 gtcgaagttt tcaatttgaa aaccggacag gcgcgcaatg tcgaagtatg gcccgatcaa
      541 gccagcggat cgattgccgc cgatctcaaa tatcgtttcg tgtggacgat gccgctgacg
      601 atctcgccgc acgatcacaa caaggtttac gttggcagcc agttcgtgca cgtgacaacc
      661 gatggcggca atagctggca agtgatcagt cccgatctaa ctttgaacga caagagcaag
      721 cagggattct cgggcggtct gaccggcgac aacatcggcg tcgaatacgc cggagtggtc
      781 tttgcaatcg ctgaatcgcc gaaggaagcg ggagtgatct gggccggcac gaacgatggc
      841 ctggtgcaaa tcacgcgcga cggcggcaag aactggacga acgtcacgaa gaacattcct
      901 aacatgctcc cgtggggcac ggtcagcaac atcgaagcat cgcgttacaa cgcaggcacg
      961 gcttacatca cggttgatgg gcatcaggtg aacaaccgcg atccgtttat ctacaaaaca
     1021 actgactacg ggaggacatg gaaagcgatc acgaacggca ttccgcacac gatgctcagc
     1081 tacgcgcatt gcgtgcgcga ggatccggtg cgtcagggtt tgctttacgt gggcaccgaa
     1141 ggcgggctct tcgtttccta tgacgatggc gcgaactggc agccactgca aaataatctg
     1201 ccgcacgctc cggtttattg gatcacgatt caggagcact tcaacgatct cgttatctcg
     1261 acgtacgggc gagggttctg gattctcgat gacatcacgc ccattcagca aatgacgcct
     1321 gaggttctca actcgtcggc gcatctgttc accgtccacc cggcttatcg ctttcgcggg
     1381 atcaccgtgc cgtacgcgtc gtcggacgat ccggttgcgg gacaaaatcc gccttatggt
     1441 gcttcgatca attactactt gaaagcaaca ccgaaggctg atccgtcaat caagatcgtc
     1501 gatgccgagg gcaaaactgt gcggacaatt cgcggcacgc gcagcgccgg catcaatcgc
     1561 gtctggtggg acttgcgcac cgaccaatca aaagaagttc gtctgcacac gagtccggca
     1621 tacgcgccag aggtgcgcgt taatgccgaa ggttggcgac cgcttccgga aggcggacga
     1681 atgaatgtgc tcgtaccgcc gggaacttac acagtgaaac tctctgtcga tagtcaggag
     1741 ttcagtcaac cgcttgtcgt ccgcaaggat ccgaacgctg gcggcagtga cgatgacgtt
     1801 caaaaacaga ctgcgatgct gttcgaactg cgcaaggatt tggagtcagc agcggacatg
     1861 gtcaatcaga tcgaatcgat ctgcgcccag cttgaaaatc tgaaaggcgt cttgcgtggc
     1921 aatgcagatg tcagaaccgc ggcggacgat ctcgacaaga agctgatcga tatcgaagac
     1981 aatctgattc agcgaaaatt cacgggtcag ggacaggaca caacgcgctt cccgccgaaa
     2041 ctcatcagca agatcgctta tcttggcagt ggcgtcaacg gtggcgacta tccgcccaac
     2101 acgcagcaga aagaagtgca gggaatgttc gaggcgcagt tatccaactt gcgcaagcgg
     2161 cttgacgacg tggtgggcac tgatctcggc aacttcaatc gaatgctgcg cgataagaac
     2221 atcgggaacg tcattgccgc cgggcaatag cgcgtgtcag gaacccgcgc ttcttagtgc
     2281 agtagcttcg cgctcaagtg cgaatgttaa tctcccaccg ttgctcaatc aaaggatcgc
     2341 cgacgcccta tcgcacgagg gcgtagcggc gttaacaaac ctacaggagc ctatcgttat
     2401 gtgtgagtgt gccgaaatta atctcaaatc aaaccaactc cttatctcgc tgtttttagt
     2461 cggcctcctg gtagcgatgc cgatctcaac gttcgcgcgt gtcagaaccg ggagcggtag
     2521 cgaccgggtt ggttctgcgt tttcactatc ggttttcgcg caggaccaaa acggcggtca
     2581 ggaaacgatc gcgagacagc aaccgtcgcc ggaagtacag aaacctgtag aagcgaagaa
     2641 gcctgacgaa gaaaaaccgg aagacgaaag caagccacgc gatccgctgg cgacgccgac
     2701 cttcaacgga ttacggctgc gctcgattgg cccggcgttt acgtcgggcc gcatcagcgg
     2761 catcgccgtc gatcctaaca gcccttctca ttattttgtt tcggccgctt caggcggagt
     2821 atggaaaact ctcaacgcgg gcattacgtg gacgccggtg ttcgatcgcg aaggctcgta
     2881 ttccatcggc tgtgtcgtgc tcgatccgaa gaaccctttg acggtgtggg ttggcacggg
     2941 cgagaacaac agtcagcgca gcgtctcgta cggcaacggc gtttaccgtt cagacgacgg
     3001 cggcaagaca tggaagaacg tcggcctgaa aacgtcggag cacatcggac ggatcgcgat
     3061 cgatccaaaa gattcgaaca tcgtttatgt cgcggcgcag gggccgttgt ggggaccggg
     3121 cggcgatcgc ggcctttaca aaaccaccga cggcggcaag gcgtggaaac agattctgaa
     3181 gattagcgag aacaccggcg tcaccgatgt cgccatcgat ccgcgcgacc cggacacggt
     3241 ttacgcggcg tcatatcagc ggcgtcgtca catgtggacg ctgatcgacg gcgggccaga
     3301 gagtgcgctc tacaaatcga ccgacgccgg cgcgacgtgg aacaaactgc gcgccggatt
     3361 gccgacgact gagatgggcc gcatcggatt ggcaatctct ccggtcgatc cgaacgtagt
     3421 ttatgcaacg attgaagccg ctgatcgcaa aggcggcatt tttcgctcga acgatcgcgg
     3481 cggcagttgg gaaaaacgaa acgagtttga cgccggtgca atgtactacg cgcgcatcgt
     3541 cgccgatccg aaggacgtcg atcggatcta tgtgatgaat gtttttctga tggtttcgga
     3601 cgacggcgga agaacgctgc ggcggctcgg tgaaaaatcc aagcacgtcg ataaccacga
     3661 gatctggatc gatccgaaca acaccgatca ctatctcgtt ggctgtgacg gcggggttta
     3721 tgaaagttat gaccgcggcg ctaactggga tttcaaacgc aatctgccgg tgacgcagtt
     3781 ctatgatgtg accaccgaca acgccgcgcc gttctacaac tgtctatggc ggcgcgcagg
     3841 acaatttcgc ctttggcggc ccgtcgcgta cgcgcaatgc gtccggcatc gttaacagcg
     3901 attggtttgt tacccagggc ggcgatggtt ttcgcagtca ggttgatccg gaagatccga
     3961 acacgattta tgcggagcta cagaacggca atcttgttcg ccacgacaag cgcacgggcg
     4021 agcgcatggg cattcagccg caggttggcc gcggcgagga tcctttgcgc tggaattggg
     4081 attcgccttt catcatcagt ccgcattcgc acacgcggct ttactttgcc gccgacaaac
     4141 ttttccgcag cgacgatcgc ggcgatagct ggcaaccgat cagcgggcaa ctctcgcgtg
     4201 gtttggatcg cgacaagctg caagtgatgg gaaaggtgtg gagcatcgat gcggtagcga
     4261 agaatgcatc gacggctttc ttcggcaacg cttccgcgct cgccgaatcg ccgaggaaag
     4321 aagggctgat ctacgtcggc acggatgacg gcctgattca gattaccgaa gacggcggca
     4381 aaaactggcg caaagttgaa aagcttcccg acgtccctga gttggcggac gtgagccgca
     4441 tcgtcgcgtc gaacacggac gcgaacacag cctatgtggc gttcgagaac cgtcagaacg
     4501 cggacttcaa accatatcta ttgaaaacca ctgatgctgg tcgcacgtgg gtttcgatca
     4561 agggtaatct gccgtcgaat catcccgtct ggggaatcgc cgaagatcac gtcaatccga
     4621 atctgctttt cgtcggcacg gagttcggtc tcttcttcac catcgatggc gggcaaaagt
     4681 gggtgcaact aaaaggtggt ttgccgacta ttcaggtgcg ggacctcgcg atccagaaac
     4741 gcgagaatga tctcgtcgtc ggaacctttg gtcggggatt ttacatcctg gataactaca
     4801 ccgcgctgcg ctcgctgaaa ccggaaacgc tcaaacagga cgcggtgttg tttcccgtca
     4861 aagatgcttt gatgtacatc caggcgcagc ccatcggcgg ccgcggcaaa agcttccagg
     4921 gcgagtcgta ctacacggcc gagaatccgc cgttcggcgc cacgttcact tactatttga
     4981 aggacgcgct gaagacaaag aaagaaaagc gacaggaagc cgagaaggat gtggcgaaga
     5041 aaggcgccgc gctttcaatt ccgaaccgtt ccgatctaac ggctgaagaa gaagaggagg
     5101 cgccggcgat cattttcacc gtgaccgacg caaccggcca cgtcgtaagt cgtctgaccg
     5161 ggccaattac cgccggcatc cagcgcgtct cgtgggacct gcgttatcca cccgcgtcgc
     5221 tgccgccgcc gccgaatccg gaaactgaag atcctttcaa cgaaggacct gcggggcctt
     5281 tggtcatgcc cggaacgtac aaagtctcgg tcgctaagcg gacggacggc gtgatcacgt
     5341 cgctgtctca accgcaggag ttccaagtca aggttgaagg ccaggaaaac atgtccgctt
     5401 cagatcgcgc ggcgctggtc gagtttcagc agaagaccgc gcgcctgcaa cgagcggtta
     5461 gcggcgcgct cgaagctgct aacgcactca agccgcgcct cgctgcgatc agacgcgcac
     5521 ttttggaaac gccttcagcc gggagtcgct gctggctgat gctacggcat tggacaaacg
     5581 cacgaacgaa gtgctgcgag ctttgcgtgg tgacaacgcc ctgcgcgcgc gcaacatgaa
     5641 tttgccgcct tcgataaacg agcgtgttgg tgacattgtc ggctcgcagc gaatgtccac
     5701 tgctcgtccg acgcagacgc aaatgaatca atacgcggcc gccgcgcagg actttgaaac
     5761 gacgctgacg caattgcgcc aactgatcga aggcgatctc atgaggttgg aaaagcagat
     5821 ggaagccgcc ggcgcaccct ggacgccggg acgcattccg gaatggaagc cggagaagtg
     5881 atttggatta gagaagaggg ttagttaaaa agaactgcga ggtcgggctt ggaccagccg
     5941 cgttcacgcg gctttcccgc aggggtacta gaccagccgt tttacggctg ggtcacgatg
     6001 cgaaataaga acctcagccc gcttcagcgg gcttctctcg aaaggcttcc accatgtcga
     6061 atcgcgccta ctccgaaatt aacctccaca tcacttggca cgtgaaggag agtttgccga
     6121 tcatcactga ggtgatagaa ccgcgactgc accaaatacc tccaacacta agcgctgcaa
     6181 gcgaagggcg tcatcgtcca cgcaataggt ggcaccgaaa ctcacgttca catggccgtg
     6241 agcatcccac cgacgttggt catcgccgac acgataggaa aacttaaagg ctcaagctct
     6301 cattacgtca accacgaact agtcaatcgc aaactgctcg actggcaaac tggttacggt
     6361 gtggtgagtt tcggaacgaa ggatctcgaa tgggtcgtga actacattcg caatcagaag
     6421 caacatcact gcaaaggaag aatcgtggat cgccttgagc gaatcaataa tgatgacgac
     6481 gatgacggct aaagcctgtt caggtaagca cgttgtagcg cgctagttga gatcgtgccg
     6541 cgcgtaccca gcgccaaaag cgctggtcta acagccccta cggggaaagc ccgatgaatc
     6601 gggctcatgc gactgtgttc gactcgacag gttaaagtcc cggggcatga atcgcctccc
     6661 gtaaaatcgc agcgcgcagt ctcggcttaa taccgtcggc gagtacgagg tcaacacggc
     6721 gatcgaaaag ctcttccaga aacaacttca agtccatgta gcagtca
//
LOCUS       DASZZE010000115         4726 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_166107, whole genome shotgun sequence.
ACCESSION   DASZZE010000115 DASZZE010000000
VERSION     DASZZE010000115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4726)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4726)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4726
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_166107"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(175..1161)
                     /locus_tag="VHD88_02270"
     CDS             complement(175..1161)
                     /locus_tag="VHD88_02270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20641.1"
                     /translation="MRHRATLAVLFGLALLSSASLRAQTPPVTDDEVKVTVYRRFVEN
                     REPNPGVAYDAAKEYMRLYGKENDDYTRYLKQWIAAYEEDERARRLAAEREDREQQLL
                     GAFTQKKFADAYARARQVLSDDPNNVKVLIALGYGAVIASTEAKNENFNAEAADYAQK
                     AIQLIESGKTLESWTPFKSKEDVLASLHYALGFYSLKAKPEEAIVHLVKAAQSNTDRK
                     TAPSTYYYLALAYQNGPYRRLSDDYSKRFSTLPESPDSKAALENINKVVDKIIDAYAR
                     AVALAGNDPQHQKAKSGWMVPLTDFYKYRHDKSDAGLNPLIAGVLSKPLPQP"
     gene            complement(1263..2147)
                     /gene="lpxC"
                     /locus_tag="VHD88_02275"
     CDS             complement(1263..2147)
                     /gene="lpxC"
                     /locus_tag="VHD88_02275"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: protein motif:HMM:TIGR00325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008759 - UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HVS20642.1"
                     /translation="MKQTTLAGPVETKGLGLHTAVPVQIRLMPAPPDTGYVFRRTDLG
                     GFEIPANVESVAHCSYATTLMRTGVMLSTVEHLLSALRGCGVDNAYIEVDNLEVPIMD
                     GSAEAFAEMIESAGIAEQSPARRALMVRETVGIEAGNRRISIEPADAYEIDCLIDFPH
                     PLIGVQHRSVTLDNGSFARDIASARTFGFIEEIEALRRANLIRGGSLDNAIVLTKHGM
                     LNETGLRFPDEFVRHKILDIVGDLALLGMAVLGRVKAERSGHLLHAALMSSLLRNRAA
                     WEIVDLPVAKGARTSLSA"
     gene            2398..>4726
                     /gene="polA"
                     /locus_tag="VHD88_02280"
     CDS             2398..>4726
                     /gene="polA"
                     /locus_tag="VHD88_02280"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF004397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006261 - DNA-templated DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HVS20643.1"
                     /translation="MPPTKSSAAEKPAERVFLIDSMSHIFRAFYAPMANRAAPLQTSK
                     GQVTQAVLIFTNMLRKLLQDEQPKYIAAIFESGEKTFRHETFKDYKANRQEMPDDLAS
                     QLPYIMRVCQAYNLPMISVPGFEADDVIGALAVQAADKGLQAVIVSNDKDMCQLVRDP
                     LVVCMRQNSQVIKRKEPVPPIEWCDEAWVEKKFGVTASQVVDLLGLMGDSVDNIPGAP
                     GIGAKGAVQIIQQFGSIENALKHWEEVKHKTYRESLRDNVELIRKSRELAQIRIDVDV
                     QLDLELLRARPPDRRAAYDLFRELEFQALTNEFADAAGATTRAASERKYSVIQSRKDL
                     DAFVQQLWQAEHVGLAISNSSPPGAGQQQSTRDEHGARGIAFSKAAGESAFVDLENFS
                     EGKDAALASLRELLSNGLLEKSVHDLKRATALLAPLGIELAGVADDTLLGAYILDPTR
                     SKYELTDLAREATGAEGGGPAYDGWNDDAWQATEAADLTARVARELRKRIDEKDLGGI
                     YQEIELPLAPLLYRIERAGIRVDTAVLAELSRHLGEELAKLTDRICKLAGREFNINSP
                     KQVAECFEELSIVSGRKTSTGRVSTSRAVLEDLAQTYELPRLIIEYRELDKLKSVYTD
                     ALPHQIGADGRIHSQLNQTVAATGRLSSSDPNLQNIPIRTELGRRIRRAFVAEQGCKL
                     VSADYSQLELRLLAHITRDEVMLDAFQKGEDIHNRTARLVFNAKTDEELKEARRFAKI
                     VNFAIAYAIEPWGLSQRVGITRQEARKVIDDYYATY"
BASE COUNT         1074 a         1294 c         1360 g          998 t
ORIGIN      
        1 tcgccttggc aaggcgatgc tctaccactg agctactccc gctttttcaa cgagattcga
       61 ttctaatgat tcaaggtggg ttgtcaaggc agctaaattg caagcaagcg cgtcacacaa
      121 agccaagatg gttgtgccgc ccgcacgcag gatgcgtgcg ctcccaaaac tcggtcacgg
      181 ttgcggcaag ggcttcgaaa gaactccggc gatgagcggg ttcagacctg cgtcagattt
      241 atcatgccga tacttgtaga agtcggtcag gggcaccatc catccactct tcgccttttg
      301 gtgttgcgga tcgttgccgg caagagcgac cgcgcgggcg taggcatcga ttatcttatc
      361 gaccacttta ttaatgtttt caagcgcggc tttgctatcg ggactttcgg gtagagtcga
      421 aaagcgcttg gagtagtcat ctgaaagcct acgatagggc ccattctgat aagcgagtgc
      481 cagatagtaa taagttgaag gcgcagtctt tcgatcggtg ttcgactgcg cagctttcac
      541 taagtgaaca atcgcctcct ccggtttggc cttcagcgaa tagaagccca acgcgtaatg
      601 cagcgatgcc agcacatcct ctttgctttt gaacggagtc caactctcca aagtcttgcc
      661 ggactcgatc aactgaattg ctttctgcgc atagtcggct gcttcggcgt taaagttctc
      721 gttcttggct tcggtgctcg cgatgaccgc tccatagcca agagcgatca gcactttcac
      781 attgttggga tcgtcactga ggacttgtct ggctcgcgcg taagcatcgg caaacttctt
      841 ctgcgtgaaa gcgcccaata gttgctgctc tcgatcctcg cgttccgcgg ccagacgccg
      901 cgcgcgttcg tcttcttcgt aggcagcgat ccactgtttc aaatagcgcg tgtaatcatc
      961 gttctctttg ccatagaggc gcatgtattc cttcgcggcg tcgtacgcga ctcccggatt
     1021 cggctcgcgg ttctcgacaa atctcctgta aacggtgacc tttacttcat cgtccgtgac
     1081 gggtggcgtc tgggcgcgca gtgatgcgga agacaggaga gcaagtccaa acagaacagc
     1141 aagcgtggcg cggtgtctca tcaactggaa atccctccgg taatttaatc ggcgagttag
     1201 atgctgaaag ttggaggagc gtctaaccgg cagtaaagaa ccgctcgcgc cggcgagcgg
     1261 gtttatgcgg acaaggatgt ccgcgctccc ttcgcaactg gcaggtcaac tatctcccag
     1321 gccgcgcgat tgcggagcag cgaggacatc aacgcggcgt gcagcaagtg gccgctgcgc
     1381 tcagccttga ctcggcccag cacggccatt cccagcagcg cgagatcgcc aacgatgtcc
     1441 agaatcttgt ggcgaacaaa ctcgtcgggg aaacgcaggc cggtttcgtt cagcatcccg
     1501 tgctttgtca gcacgattgc gttgtcgaga gaaccgccgc gaatgaggtt cgcgcgacgc
     1561 agagcttcga tttcctcgat gaagccaaac gtgcgagctg aagcaatgtc acgcgcgaat
     1621 gaaccgttat ccaaagtgac agagcgatgc tggacgccga tcagcggatg agggaagtca
     1681 attaggcaat cgatctcata ggcgtccgcg ggctcgatgc tgatgcggcg gttgccggct
     1741 tcgatcccga ctgtctcgcg gaccattaac gcgcggcgcg ctggtgattg ttcggctatg
     1801 ccggcgctct cgatcatttc ggcaaacgct tcagccgagc catccatgat cggaacttcc
     1861 aggttatcga cttcgatgta agcattatcg acgccgcaac cacgcagagc agacagcaga
     1921 tgctcgacag tggagagcat cacgccggta cgcatcagcg tggtcgcgta actgcaatgc
     1981 gcgaccgatt cgacgttggc tggaatttca aagccaccga gatcagtccg gcgaaaaacg
     2041 tatcccgtgt cgggcggcgc gggcatcagc cgaatctgaa ccggaacggc agtatgcagc
     2101 cccaggcctt tcgtttcgac tggaccggcg agagttgtct gtttcacgat gacgagctgt
     2161 gcctctcctt atgagatcaa aaccgagaga atttgacagt gcaagacaca tgcctttcgt
     2221 aacgcagcga atatgcgcgt aactgaaaat agtttgtggc gttcgcgcca cgattttgtc
     2281 tttccaccgc ggcggatgtg caacgatgat tgagtagaaa gggacgactc ggaaagcgtg
     2341 agcaagcaac aaaagcaaat tgacactcgc aaagcgcgtc tctatgatcg attgccaatg
     2401 ccgccaacaa aatcttccgc cgcggagaag ccggctgagc gagtctttct catcgactca
     2461 atgtcgcaca tctttcgcgc gttttacgct cccatggcca atcgcgcggc gccgctacag
     2521 acttcaaaag gtcaggtcac gcaggcggtt ttgatcttca ctaacatgct gcgcaagctc
     2581 ttgcaggatg agcaacctaa gtatatcgcg gcgattttcg aatccggcga gaagactttt
     2641 cgtcacgaaa cattcaagga ttacaaggca aatcggcagg agatgccaga cgatctcgct
     2701 tcacaactgc cgtatatcat gcgggtgtgc caagcctaca acctaccgat gatcagcgtg
     2761 cccggattcg aagcggacga cgtgatcggc gcgctcgcgg tgcaggcggc cgacaaaggt
     2821 ctgcaagcgg tcatcgtttc caacgacaag gacatgtgcc agctcgtgcg tgatcctttg
     2881 gtcgtttgca tgcggcagaa ctcgcaagtc atcaagcgca aagaacccgt cccgccgatc
     2941 gaatggtgcg acgaagcctg ggtagaaaaa aagtttggcg tgaccgcaag tcaggtagtc
     3001 gatctgctcg gattgatggg tgattccgtt gacaacattc ccggcgcgcc gggcattggc
     3061 gcgaaaggcg cggtgcaaat cattcagcag ttcggttcga ttgagaacgc gctcaagcat
     3121 tgggaagagg ttaagcacaa gacttatcgc gagtctttgc gcgacaacgt cgaattgatt
     3181 cgcaagtcgc gcgagttggc gcaaatcaga atcgacgtgg atgtgcaact cgatctcgaa
     3241 ctattgcggg cgcgcccgcc cgatcgccgg gcggcttacg atctgtttcg cgaattggag
     3301 tttcaggcgc tgacgaacga gtttgccgac gctgccggcg caactacgcg agcggcgagc
     3361 gaacgcaagt actcggtcat tcaaagcaga aaagatttag acgcattcgt tcagcagttg
     3421 tggcaagccg aacatgttgg gttggcaatc tcaaactctt cgccacccgg cgcggggcaa
     3481 cagcaaagca cacgagatga acacggggca cgcggcattg cattctcaaa agcagcaggc
     3541 gagtccgcgt tcgtcgatct cgaaaacttt tcagaaggca aagacgcggc gctcgcttct
     3601 ttgcgcgaac tactcagcaa tggcttgctc gaaaaatccg tgcatgattt gaaacgcgcc
     3661 acggcgctcc tggcgccgct cggaattgag ttagctggtg tcgcggatga cacgctgctc
     3721 ggcgcttaca tccttgatcc gacgcgcagc aagtacgagt tgactgatct ggcgcgcgaa
     3781 gcgacgggcg cggaaggcgg cggtccggct tacgacggtt ggaatgatga cgcgtggcag
     3841 gcaacggaag ccgcagatct caccgcgcga gtagcgcgag agctacgcaa gcgaatcgat
     3901 gagaaagatc tcggcggaat ctaccaagag attgaattgc cgctggcgcc gctgctttac
     3961 cgaatagagc gcgccggcat ccgcgtggac acggcagtgc tcgctgaatt gtcgcgacat
     4021 cttggcgaag aactggcgaa gctcaccgat aggatttgca agctggcggg aagagaattc
     4081 aatatcaact cgcccaagca ggtcgcggaa tgctttgagg agctaagcat cgtttcgggc
     4141 cgcaagactt cgactggccg agtttcgaca agccgtgcgg tgctcgaaga tctggcgcag
     4201 acttacgagc tgccgcgttt gatcatcgag tatcgcgaac tcgacaaact caagagcgtt
     4261 tataccgacg cgttgccgca tcagatcggc gccgacggcc gcattcattc tcagcttaac
     4321 caaaccgtgg cggccacggg tcggctttca tccagtgatc cgaacttgca gaacattccg
     4381 attcgcaccg agctgggtcg ccgcattcgc cgcgcgttcg ttgccgagca aggctgcaaa
     4441 cttgtctctg ctgattattc gcaactcgaa ttgcggctgc tcgcgcacat cacgcgggac
     4501 gaagtgatgc tcgacgcttt tcagaaaggc gaggacattc acaatcgcac ggcgcgcctg
     4561 gtcttcaacg cgaagactga cgaggaactg aaagaagcgc gtcgcttcgc gaagattgtg
     4621 aatttcgcaa tcgcttacgc gattgagccg tggggtctgt cacagcgtgt cggcatcacg
     4681 cgccaggaag cgcgcaaagt gatcgacgat tattacgcga cataca
//
LOCUS       DASZZE010000116         6043 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_148492, whole genome shotgun sequence.
ACCESSION   DASZZE010000116 DASZZE010000000
VERSION     DASZZE010000116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6043
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148492"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..790
                     /locus_tag="VHD88_02285"
     CDS             <1..790
                     /locus_tag="VHD88_02285"
                     /inference="COORDINATES: protein motif:HMM:NF012432.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lyase family protein"
                     /protein_id="HVS20644.1"
                     /translation="TKAREAVAVGKISGAVGAFAHLDPEVEEKVCARLGLKAAPVSTQ
                     IVQRDGYAEYLCALAIVASSLDKFALQVRHWQRTEVREAQEKFKKGQKGSSAMPHKRN
                     PILSERICGMARIVRANSIVGLENIALWHERDISHSSAERVVLPDSSIAVDYMLAKMA
                     SLVDGLVVYPERMLENLQATRGLIFSGQLLLALTQAGVAREEAYEWVQRNAMKSWDEG
                     VDFHSLVSGDKEIRAHLSEEQIARVFSLETYLRNIDAIFARVFR"
     gene            complement(811..1215)
                     /locus_tag="VHD88_02290"
     CDS             complement(811..1215)
                     /locus_tag="VHD88_02290"
                     /inference="COORDINATES: protein motif:HMM:NF021221.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4870 domain-containing protein"
                     /protein_id="HVS20645.1"
                     /translation="MDTGKSALGLDGNLAAALGYPIGIIAIISLIMEKENRFVKFHAL
                     QSILLHVGFIVVAIAVWIIGIVLLIAGAAASAATNSGAAGGIIGMLFGLVWLVVIVCY
                     IGGLIFAAVKSYGGVQFKLPVIGNMAEKFASK"
     gene            complement(1253..1681)
                     /locus_tag="VHD88_02295"
     CDS             complement(1253..1681)
                     /locus_tag="VHD88_02295"
                     /inference="COORDINATES: protein motif:HMM:NF021221.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4870 domain-containing protein"
                     /protein_id="HVS20646.1"
                     /translation="MSSEYPAGGPPSGAPGGKTSLGLDSNLGAMLCYIANILCCLGVI
                     LSIVFLITEKENRFVKFHALQSLFLGGVCVVLLIVVEILGVILGMVHLGILATGLWFI
                     LVLIFLVLWLLAGIKAYSGQWYKLPGIGDFAWKIVNKESN"
     gene            1843..2088
                     /gene="purS"
                     /locus_tag="VHD88_02300"
     CDS             1843..2088
                     /gene="purS"
                     /locus_tag="VHD88_02300"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR00302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HVS20647.1"
                     /translation="MKAKVYVTLKPSVLDPQGKAIKHSVELLGYNGVSDIRQGKYFEI
                     VIDGSLSDDQAREAAERMAREVLSNPIIEDFRVEIEA"
     gene            2085..2783
                     /gene="purQ"
                     /locus_tag="VHD88_02305"
     CDS             2085..2783
                     /gene="purQ"
                     /locus_tag="VHD88_02305"
                     /inference="COORDINATES: protein motif:HMM:NF002957.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurQ"
                     /protein_id="HVS20648.1"
                     /translation="MKFGVIVFPGSNCDHDAYHVISKHVGQPVDFIWHRDTNLSTYDA
                     VIIPGGFSYGDYLRAGALASFSPVMNSVKEFAAQGKLVLGICNGFQILCEAGLLPGAL
                     IRNRELHFVCDHVNVRVESANSPFTHELKPGSILRMPIAHADGNFVCDDATLAELQRE
                     DRIVFRYCARDGQVTDAANPNGSRDNIAGICSRGRNVMGLMPHPERACEDLLGSSDGR
                     EVFRSLAGTLAAAA"
     gene            2859..3347
                     /locus_tag="VHD88_02310"
     CDS             2859..3347
                     /locus_tag="VHD88_02310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20649.1"
                     /translation="MKRHPGWLAAGLLLIAVLACSTGKNTNNSNNSNSNGNKSSKSSS
                     DTRPSNADVYIEKISMAKDNNGEPGDTTTSFEPGDHTIHCIADLNRAKSGTAVKFVWK
                     AVDVADSKNEEIKTIDYTTKSFENKVHGHLTLPRDWPKGTYKVEVYINGTLDKTITYT
                     VE"
     gene            3396..3824
                     /locus_tag="VHD88_02315"
     CDS             3396..3824
                     /locus_tag="VHD88_02315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20650.1"
                     /translation="MKLHSSWLAVGMLVFAVFACNIGKNSNSSDSNGPISEGHMAKDK
                     NGEPGDQTNTFNPSDRTVHCVVTLKEPKEGTRMKFAWWIVDAQGTKNEKMKEIEYTTG
                     PGENLVHGHLTLPRDWPTGKYKCEVDVNDKLEKTIDYWVK"
     gene            3825..4496
                     /locus_tag="VHD88_02320"
     CDS             3825..4496
                     /locus_tag="VHD88_02320"
                     /inference="COORDINATES: protein motif:HMM:NF024853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HVS20651.1"
                     /translation="MKRSLPLLIIAAVLVAAVAATWMLLRSAQRLSTNYSTPTAGSDA
                     PGAEPPHIRGNANAPVTLEEFGDFQCSSCGIYYGELKKIEGEFGDRLRVTFREFPLVP
                     THQNALVAAQAAEAASLQGRFWEMHDKLYENQKAWSDAKDVLPMFVELAKQIGLDTDR
                     SGRDLSGEVVAARIFQDGKRGHALGVTSTPTFFVNGKEATGESWKPDGLREMIKQALR
                     ETPGK"
     gene            4493..4960
                     /locus_tag="VHD88_02325"
     CDS             4493..4960
                     /locus_tag="VHD88_02325"
                     /inference="COORDINATES: protein motif:HMM:NF019499.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin K epoxide reductase family protein"
                     /protein_id="HVS20652.1"
                     /translation="MIASVPTEDHRQQIAWPYLIAPLLSLVGLADAIYLTVEHLTGQS
                     LRCTIIAGCSEVLSSPYAHIGSVPLAAIGAAAYFTVFSLATLAAFRYRFAATLLRIVV
                     ALMFLTTLWLLYLQAFVIRHFCQYCLLSAAVTTILTLIVFLIRGSRRSLKNAG"
     gene            5053..5664
                     /locus_tag="VHD88_02330"
     CDS             5053..5664
                     /locus_tag="VHD88_02330"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HVS20653.1"
                     /translation="MKKQYGISLFLATVLIVAFAAVAGSGRGDDSALVAPAIGSTIED
                     FKLPAIDGTERSLNSLKGRSGTVLIFISVQCPVSNGYNERMEKLAEDYKARGVNVIGI
                     NANATETTEAVKAHAAERHLNFTILKDPGNKIADRLGATRTPEAYVIDASGKLVYHGR
                     IDNSLKLEGVTSNDLRDALDALLAGKPIQKTTAVAFGCSIKRA"
     gene            5706..>6043
                     /locus_tag="VHD88_02335"
     CDS             5706..>6043
                     /locus_tag="VHD88_02335"
                     /inference="COORDINATES: protein motif:HMM:NF012787.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HVS20654.1"
                     /translation="MRSRLATFVVGLVAVCTFAAGSVPPAKSNSARAAEPSDIRQIDL
                     DGLKKLLRRDPKDTRPLLVNFWATWCDPCREEFPDLVKIDSDYRTKGLNFVAISLDDV
                     TDIKTAVPQFL"
BASE COUNT         1438 a         1627 c         1689 g         1289 t
ORIGIN      
        1 gacaaaagcg cgcgaagccg tcgccgtcgg aaagatcagc ggcgccgttg gcgccttcgc
       61 gcacctcgat ccggaggtcg aagaaaaagt ttgcgcgcgg ctcggtttga aagctgctcc
      121 cgtctcaacc cagatcgtgc agcgcgacgg ctacgccgaa tatctctgcg cgctggcaat
      181 cgttgcgtcg tcgctcgaca agtttgcttt gcaagttcgc cattggcagc gcaccgaagt
      241 acgcgaagcg caggagaagt tcaagaaagg ccagaaaggc tcgagcgcga tgccccacaa
      301 gcgcaatcca attctttccg agcgcatctg tggcatggcg cgcatcgtgc gcgcgaacag
      361 cattgtggga ttagaaaaca tcgcgctctg gcacgagcgc gacatttcgc attcgtccgc
      421 cgagcgtgtc gtgctgccag attcgagtat cgcggttgat tacatgctag ccaagatggc
      481 gtcgctcgtt gacggactgg tcgtctatcc cgaacgcatg ctggaaaatc tgcaagcgac
      541 gcgtgggcta atctttagcg gacagttatt gctggcgctg acgcaagctg gcgtcgcgcg
      601 cgaagaagct tacgaatggg tgcagcgcaa tgcgatgaag agctgggacg aaggcgttga
      661 ttttcattcg ctggtttcgg gcgacaaaga aatacgcgcg catctctccg aagaacagat
      721 tgcgcgcgtc ttctcgttgg aaacttactt acgcaacatc gacgcgatct ttgcgcgggt
      781 gtttcgttaa ggaaagagac tatctggccg ctacttgcta gcgaacttct ctgccatgtt
      841 gccgatcacc ggaagcttga actgaacgcc gccataagat ttcacggccg cgaatataag
      901 tcctccgatg taacagacaa tcactaccag ccaaacgagg ccgaacaaca tcccgatgat
      961 tccgccggcc gcgccactgt tcgtagcggc gctggcggcg gcgccggcga ttagcaggac
     1021 gatgcctatt atccacaccg caatcgccac cacgataaag ccaacgtgca gcaggatcga
     1081 ctgcagcgcg tgaaacttca caaagcgatt ctctttttcc atgatgaggg agatgatcgc
     1141 gatgatgcca atgggataac caagcgcggc ggccaggttt ccgtcaagac cgagagctga
     1201 tttgcctgtg tccattgcag ttcctccgtc gagttgagtt gaagttcgaa gattagttgg
     1261 attccttgtt aacgatcttc caggcgaaat cgcctatgcc gggtagcttg taccattgtc
     1321 cgctgtaggc tttgataccg gccaatagcc agagcaccag aaaaataagt actagaataa
     1381 accagagtcc cgtagccaga atgcctagat gcaccattcc taaaattacc ccaagtatct
     1441 ccaccacaat caggagcacg acacacactc cgccgaggaa gagcgactgc aatgcatgga
     1501 acttaacgaa gcggttttct ttttccgtga tcagaaaaac tatgctgagg atcacaccga
     1561 gacagcagag aatattcgcg atgtaacaca gcatggctcc cagatttgag tcgagaccca
     1621 aacttgtctt accgcctggc gcgcctgatg gcggtccgcc tgctggatac tcagatgaca
     1681 tttacgcttc tcctcgcaga ttcatgaaca agtaacgcaa cggcgcaaat agtatgatat
     1741 tgactacacg ttgcgcaacg ttttggcgta atatcttgcg ttcatccgag tcacggtcag
     1801 gaatggacag cggaagacca gggacttggc cgtcctcaag acatgaaagc gaaagtttac
     1861 gtcacgttga aaccgagcgt cctcgatccg cagggcaagg cgatcaagca ttctgttgag
     1921 ttgctcggct acaacggcgt cagcgacatt cgtcagggca agtatttcga gatcgtcatc
     1981 gacggctcgc tcagcgacga ccaggcgcgc gaagcggccg agcgcatggc gcgcgaagtg
     2041 ctgtcgaatc ccatcatcga agactttcgc gtggagatcg aagcttgaag ttcggcgtca
     2101 tagtctttcc cggctcgaac tgcgatcacg acgcttatca cgtgatctcg aaacacgtgg
     2161 gccagccggt agatttcatc tggcatcgcg acacgaatct ttcgacgtat gacgcggtga
     2221 ttattccggg tggcttttct tacggcgact atttgcgcgc cggcgcgctg gccagttttt
     2281 cgccggtgat gaattcagtg aaagagtttg ccgcgcaagg caaactggtt ctgggcatct
     2341 gcaacggttt tcaaatcctt tgcgaagccg gcttgctgcc gggcgcgctg attcgcaatc
     2401 gagagttgca ttttgtctgc gatcatgtaa acgtgcgcgt ggaaagcgcg aattcgccgt
     2461 ttacgcacga gctaaaaccc ggaagcattc tgagaatgcc gattgcgcac gccgacggaa
     2521 acttcgtctg tgatgatgcg acgctcgccg agctgcaacg ggaagacaga atcgtctttc
     2581 gctattgcgc ccgagatgga caagtaactg acgctgcgaa tcccaatggc tcacgcgata
     2641 acattgccgg tatttgcagc cgcggccgga acgtaatggg attgatgcca catcccgaac
     2701 gggcttgtga agacttgctc ggttccagcg acggacgcga agtttttcgc tcgctggccg
     2761 gaacgctggc ggctgcggcg tgaaattaat ttcggtatgt tcttattccg aaatcaggaa
     2821 ttcagttttc actcgaccaa aagaaaggac aactcaaaat gaaacgtcat ccaggttggc
     2881 tggccgccgg gctgctcctt atcgcggtgc tcgcgtgcag caccggcaag aacaccaaca
     2941 attcgaacaa ctcaaattct aacggcaaca aatcgtcgaa gtcttcaagt gacacgaggc
     3001 cctccaacgc cgacgtgtat atcgaaaaaa ttagcatggc taaggacaac aacggcgagc
     3061 cgggagacac gactacatcc tttgaaccgg gtgaccacac catccactgc atcgccgacc
     3121 tgaacagagc caagtcgggc accgccgtga agtttgtatg gaaagccgtc gatgtggctg
     3181 acagcaagaa cgaagagatc aagacaatcg attacacgac caagtctttc gagaacaaag
     3241 tgcatggtca cttgaccttg ccgcgcgatt ggcccaaagg cacgtacaag gtcgaggttt
     3301 acattaacgg cacgctcgac aagactataa cctataccgt cgagtagagc ttcaactctg
     3361 actatttcga caaacccaga aaggacaact caaaaatgaa acttcattca agctggctag
     3421 ccgtcggaat gcttgtcttc gcggtgttcg catgcaacat cggcaagaac agcaacagct
     3481 cagactcgaa cggcccgatt tccgagggtc acatggccaa agacaaaaat ggagagccag
     3541 gcgaccaaac gaacaccttc aatccgagtg accgcacggt tcactgcgtg gtcactctta
     3601 aggagccaaa agaaggcacg aggatgaaat tcgcgtggtg gatcgttgac gctcagggca
     3661 ctaagaacga aaagatgaaa gagatcgagt acaccaccgg accaggggag aatctcgttc
     3721 acgggcacct gactctgccg cgcgactggc ccacaggtaa gtacaagtgc gaggttgacg
     3781 tgaacgacaa attagaaaag acgattgatt actgggtcaa gtaagtgaag cgctctctgc
     3841 cattgctaat catcgcggct gtcttagtcg cggcggtggc ggcaacgtgg atgctgcttc
     3901 gctcggcaca gcgtctgtca acaaactact cgacgccaac tgccggctca gacgcgccgg
     3961 gcgcggagcc gccgcacatt cgaggcaatg cgaacgcgcc ggtgacgttg gaagagtttg
     4021 gcgacttcca atgttcttcg tgcggcattt attacggaga actcaagaag attgaaggcg
     4081 agttcggcga tcgccttcgt gtgacgttcc gcgagtttcc tctggtgccg actcatcaga
     4141 acgctttggt cgcggcgcaa gcagcagaag ccgcaagtct tcagggccgt ttctgggaga
     4201 tgcacgacaa gctctacgaa aatcagaaag cgtggagcga cgcgaaagat gtgctgccga
     4261 tgttcgttga gctggccaaa cagattggac tggataccga tcgctctggg cgcgacctca
     4321 gcggcgaagt cgtggccgcg cgaatttttc aggacggcaa acgcggccat gcgctgggcg
     4381 tgaccagcac gcctacattc ttcgtcaacg gtaaagaggc gacgggtgag tcgtggaagc
     4441 cggacggact tcgcgaaatg atcaagcagg ccctgcgcga aactcccggg aaatgatcgc
     4501 aagtgttcca accgaagacc atcgtcagca gatcgcctgg ccgtatctca tcgccccact
     4561 gctgtcgctg gtcggcctgg ccgatgcgat ctatctcaca gttgagcacc tcaccggcca
     4621 gagtcttcgc tgcaccataa tcgccggctg ctccgaagta ctcagcagtc cctacgcgca
     4681 catcggttca gtgccgcttg ccgcgatcgg cgcggcggcg tatttcacag tttttagttt
     4741 agccacgctg gcagctttca gatatcgatt tgcggcgacg ctgctgagaa ttgtggtggc
     4801 gctgatgttt cttacgacgc tgtggctgct gtatctgcaa gcgttcgtta ttcgacattt
     4861 ctgtcaatat tgtttgcttt ccgccgcggt cacgacaatc ctgacgctta tcgtttttct
     4921 gataaggggc tcgcggagaa gcctaaaaaa tgcgggctag atttgcgaac cgattcgtga
     4981 cttgccacgt ctaacttttc gctgctaatc ttggcattca acgccgtcca tttttgaaag
     5041 gagcttgcaa gcatgaaaaa gcaatatggg atctctcttt tcctcgcgac ggttctgatc
     5101 gtcgcctttg cggccgtggc aggtagcggg cgaggtgacg acagcgcgct ggtcgcgccg
     5161 gcgattggtt cgacgatcga agacttcaaa cttccagcca tcgacggcac cgagcgctcg
     5221 ctgaattcct tgaaaggcag aagcggcacg gttttgattt tcatctcggt gcagtgtcca
     5281 gtttcgaacg gctacaacga gcgcatggag aaattggccg aggattacaa agctcgcggc
     5341 gtaaatgtca ttggcatcaa tgccaacgcg accgaaacga cggaagccgt caaggcgcac
     5401 gcggccgaga ggcatctgaa cttcacgatt ctgaaagatc caggcaacaa gattgctgat
     5461 cgtttgggag ctacgcggac gccggaagcg tacgtgatcg acgcgagcgg caagcttgtc
     5521 tatcacgggc gcatagacaa ctcgctaaag ttggaaggcg tgacgtcgaa tgatctgcgc
     5581 gatgcgctcg atgctctgct ggcgggcaag ccgattcaaa aaacaacggc ggtcgcgttt
     5641 ggctgctcga ttaagcgcgc ttgattattg gttcagcgcg agctttcaac ttgcgccaca
     5701 atagaatgcg ttcacgatta gccactttcg ttgtcggcct tgttgcggtt tgcacgtttg
     5761 ccgccggctc tgtcccgccc gccaaatcca acagcgcgag ggccgcagag ccttctgaca
     5821 ttcgccagat cgatctcgat ggtctgaaga aactgctgcg gcgcgatccg aaagataccc
     5881 ggccgctgtt ggttaacttc tgggcaacgt ggtgcgatcc ctgccgcgaa gagtttccgg
     5941 atctggtgaa gatcgattcg gactatcgca cgaagggttt gaacttcgtg gcgatctcgc
     6001 tggacgacgt gacggatatc aaaaccgcgg tgccgcagtt tct
//
LOCUS       DASZZE010000117         2371 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_199673, whole genome shotgun sequence.
ACCESSION   DASZZE010000117 DASZZE010000000
VERSION     DASZZE010000117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2371)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2371)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2371
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_199673"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1605)
                     /locus_tag="VHD88_02340"
     CDS             complement(<1..1605)
                     /locus_tag="VHD88_02340"
                     /inference="COORDINATES: protein motif:HMM:TIGR04519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TAT-variant-translocated molybdopterin
                     oxidoreductase"
                     /protein_id="HVS20655.1"
                     /translation="MNQDRHINFKLLRDRVLRSVPPASAGGSSDYPPANAGGTDFISS
                     GKTYWRSLEELADSPVFEEFVQREFPQQAEEWNDPVERRTFLKLMGASLALAGLSGCV
                     IQPPEKVVPYVKQPEEETPGKGLYFATAFSLGGIATPLLARSNEGRPTKLEGNPDHPN
                     NRNGDPNDRGSSATDIFSQASILTLYDPDRSQTPLYRGEEAPWSTFVAEIRSAIDKEN
                     DGLKAKKGAGLRFLTETITSPTLAAQMTSILTDFPEAKWHQYEPVNRDNARAGAMMAF
                     GQPVNTIYDFSKADRILSLGSDFLACLPGSLRYARDFAQRRRGYAEYASQFDGFTDKI
                     MREGFFTRLYVVESTPTTTGASADHRFPVKPSEMTSIAQSVAALSPHMLPGKPMLGQP
                     VDQRQAYFFVPEIRSDWIIAMVRDLEQNGPSIVIVGDEQPPIVHALAHQANAWLGNVG
                     KTVFYTDAIEANSVDQTQSLRELVNDIDAGKVDTLVIIGGNPVYSAPADFKLNLKLDL
                     NPLNKVKTRVHLSLYNDETSELCHWHI"
     gene            complement(1715..>2371)
                     /locus_tag="VHD88_02345"
     CDS             complement(1715..>2371)
                     /locus_tag="VHD88_02345"
                     /inference="COORDINATES: protein motif:HMM:NF025890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c3 family protein"
                     /protein_id="HVS20656.1"
                     /translation="FRHSTNYLARATIYGAIFILFAALWVTAEITRSGWNTGQWIERQ
                     QPIQFSHKHHVGDDGIDCRYCHTSVETAASAGMPSTAVCMNCHKQIWADSPYLEPVRT
                     SFKTGKPLEWIRVHDLPDFAYFNHSIHVNKGVGCSTCHGRIDQMPVVSQASSLQMEWC
                     LECHRRPENFVRPKEKVFEMEWRPRNSTKEEIAQGFDLKKQYHIQEANVLTSCSTCHR
                     "
BASE COUNT          510 a          650 c          663 g          548 t
ORIGIN      
        1 aatgtgccag tgacaaagct ccgacgtttc atcgttgtaa aggctgagat gaacgcgcgt
       61 cttaaccttg ttcagcgggt tcagatcgag tttgagattg agtttgaaat cggcgggcgc
      121 gctgtaaacc ggattgccgc caatgatgac cagcgtatca acttttccgg cgtcgatgtc
      181 attgaccagt tcgcgcaacg actgcgtctg gtcgacagaa tttgcctcaa tcgcatcggt
      241 gtagaaaact gtcttgccga cgttgcctaa ccacgcgttg gcctgatggg cgagtgcgtg
      301 aacgatcggt ggctgttcgt ctccgacaat cacaatggag ggcccgttct gctcgaggtc
      361 tcgaaccatc gcgataatcc agtcagagcg aatctctgga acaaaaaagt atgcctgtcg
      421 ctgatccaca ggctgaccta gcatcggctt gcccggcaac atgtgtgggg aaagcgcggc
      481 gacagactgg gcaatacttg tcatttcgct cggcttaact gggaaccgat gatccgcact
      541 cgcgcccgtg gtcgtggggg tgctctcaac gacgtacagc cgcgtaaaga agccttccct
      601 cattatcttg tctgtgaaac cgtcgaactg actcgcatat tctgcatagc cgcgtcgtcg
      661 ctgagcaaag tcgcgcgcgt aacgcagcga tcccggcaag cacgccagaa agtctgaacc
      721 gagcgaaaga atgcgatcgg ctttgctgaa gtcgtagatc gtattgaccg gttggccgaa
      781 cgccatcatc gcgccagcgc gcgcgttgtc gcgattgacg ggttcgtact gatgccactt
      841 cgcctcagga aagtccgtga ggattgatgt catctgggca gcgagcgtcg gtgaagtgat
      901 cgtttcggtt aagaagcgca gccccgcgcc tttcttcgct ttcagcccgt cattctcttt
      961 gtctatcgct gaacgaatct cggcgacgaa cgttgaccac ggcgcttcct cgccgcgata
     1021 gagcggcgtc tgcgagcgat cgggatcgta aagcgtcaga atcgacgcct gcgaaaagat
     1081 gtccgtcgcg ctcgagccgc gatcgttagg atcgccgttg cgattgttcg gatgatcggg
     1141 attgccttcg agcttggtcg ggcggccttc gttgctgcgc gcgagcagcg gtgtcgctat
     1201 gccaccgagc gaaaatgcgg ttgcaaagta aagtcctttg ccgggagttt cttcttctgg
     1261 ttgcttgacg tagggaacga ctttctctgg cggctgaatt acgcagccgc tcaaaccagc
     1321 gagcgccagc gacgcgccca ttagcttcaa aaacgttcgg cgctcgactg gatcgttcca
     1381 ctcttccgct tgctgcggga attcgcgctg cacgaattct tcgaagacgg gcgagtcggc
     1441 gagttcttcg agactacgcc agtatgtctt gccggaagaa atgaagtcag taccacccgc
     1501 gttagcgggt gggtaatcag aggacccgcc tgctgacgca ggcggtactg acctcagcac
     1561 gcgatcgcgc agcagcttga aattgatgtg acgatcttgg ttcattttcc tgttccctcc
     1621 acccttgggg gagggttagg gtggggggct tgtggcgcgt aaaccctcac ccccaactcc
     1681 tctcccaaac ggagaggggc gtataacttt caatctaccg atgacaggtc gaacagcttg
     1741 tcaaaacatt cgcttcctga atgtgatact gcttcttcaa atcgaatccc tgcgcaatct
     1801 cttctttcgt agaatttcgc ggtcgccatt ccatttcgaa aactttctct ttcggtcgca
     1861 cgaaattttc ggggcgacga tggcactcaa gacaccattc catttgcaaa gacgaagcct
     1921 gcgaaacgac cggcatctga tcgatgcgac cgtgacaggt cgaacatccg acgcctttgt
     1981 tcacgtgaat cgagtgattg aaataagcga agtccggcaa gtcgtgcacg cgaatccact
     2041 ccaaaggctt tccggttttg aaacttgtgc gcaccggttc tagataggga ctatcagccc
     2101 aaatttgttt gtgacagttc atgcacacgg cagtcgaagg catgcctgcg gacgccgccg
     2161 tctcgaccga agtgtgacag taacgacaat cgatgccgtc atcgccgacg tgatgcttgt
     2221 gactgaattg aatcggttgt tgacgctcga tccactgccc ggtgttccaa ccagagcgag
     2281 ttatctctgc cgtaacccac aacgcggcaa acagaatgaa gatcgcgcca taaatcgtgg
     2341 cccgcgccag atagttcgtg ctgtgacgga a
//
LOCUS       DASZZE010000118         5825 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_19968, whole genome shotgun sequence.
ACCESSION   DASZZE010000118 DASZZE010000000
VERSION     DASZZE010000118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5825)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5825)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5825
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19968"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..3562
                     /locus_tag="VHD88_02350"
     CDS             <1..3562
                     /locus_tag="VHD88_02350"
                     /inference="COORDINATES: protein motif:HMM:NF024117.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HVS20657.1"
                     /translation="VYLFRGFVRRVLSTAVDEETQSALAPRVAIDREELPLRRSLVSQ
                     IIKQLAAAGELRAIQPLANSDGCVNTIASLIGEIQRAGKTPQDFQTVVESRAAESASQ
                     VSSLKSQADRKSQVASPKSQVDFDREVALIYSTYVEALDRFGLTDEDADQLRALQVLR
                     GEIGGRALSLPWLDQVDLLVLDGFFDFTPVQGEMLRRLIPAIPNVIVNLNHDQRNEEI
                     FQPFQSTIEQIKSIAAFDDKLNEEIAAVEDALAPLRERLFNVAQVANLRPSIEPSQVN
                     NLRYIELFECSDRETEIRSIAKEIKQLVFNGDYKLSDIALVVRERAAYAETILRVCAD
                     ESIPCSLGRRVEAKEIPAARACAKLFQLLKEPVREHATNPKACELAQLVKTGYFRVAP
                     EELLTLNEAFDNKYATLLHSETPSQTDGEQSDRERIERLCAKLGIGRWAPDILENAIA
                     YVGSELRVKAWLDRAQHLIDVLPSPEAAKSFLASENDNQGDDAAAIAQVEPPPDDAPA
                     KETRKRPAPVHPAVLAWSMLVMEHLRQLIANAPNEGAPEELRTALMSLLERLEFSNQV
                     RQPLNTRNSTDVPQVTLDIRGLESLRRAMFAAVRSFDYAGRVASIARSTARAPAPSLT
                     VGLLPFIDEVERCLHSQVLAIASGNRDGLRVFEATDVRGLRFRALFIAGMIEGGFPLR
                     TARDWLYPHEERERLKDHDLYLEDISAETLLKEEHYFYQAACRATDRLYLTRPLALSD
                     GSEPVASYYIAELERAIAPAEIATRQIRGDVDTHDVVHASTAAELAVDLVRQQERQSH
                     RARNANLLWPTEVAQLISKARTHGYLQDSVLRRVAIELQRNGESFGSFDGQITNDDLQ
                     AMLGSHFGSAHIYSASALSDYGNCPFRFFASRVLKLEPRSEAALDLQAIDAGKLLHDV
                     LRRFFEKHRNQYLPSLNREELRKEMNEVADKVFKEHEDLVPPLNQRIWRIDCEIRKLI
                     LEQVLLHELRLQEQTDKRGIRPAYFELAFGRASAASDPDSSPEYLKLKRNDKGATETA
                     LIQGQIDRVDVNERDRVAIAYDYKLSQGAKLGDIEAGRQVQIPIYLAAIEQLFLPSFE
                     LAGGGYYTLRGRGPRLNQGLYRRMFEDCTAVTSRTTRLDDEEWQRIRSEVSRRVWQFI
                     DGMRVGDFKVKPSLGRETCKFCDYSAVCRYDTYRISRKRS"
     gene            3762..4232
                     /locus_tag="VHD88_02355"
     CDS             3762..4232
                     /locus_tag="VHD88_02355"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HVS20658.1"
                     /translation="MNNNDQSLRDHLLSLLRGGNAHISFDDFVADFPVNACGQKIEGL
                     PYTPWQVLEHLRIAQWDILEFCRDAKHVSPKWPEGYWPKPDDLGDADLWKQTVEKFRG
                     DLKQMEDLVADPATDLFAKIPHGNGQTILREALLVADHNAYHLGALVVMGRIIR"
     gene            4896..5228
                     /locus_tag="VHD88_02360"
     CDS             4896..5228
                     /locus_tag="VHD88_02360"
                     /inference="COORDINATES: protein motif:HMM:TIGR03433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HVS20659.1"
                     /translation="MSKSKAGLLQGTLDMLILKALSLGSLHGYGVGQRIGQISGDALR
                     VEEGSLYPGLYRLERRGWIESEWDVSENNQRAKFYKLTRAGRKQLTVEEQNWERLAGA
                     TKKALRTV"
     gene            5246..5659
                     /locus_tag="VHD88_02365"
     CDS             5246..5659
                     /locus_tag="VHD88_02365"
                     /inference="COORDINATES: protein motif:HMM:NF038403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease prefix domain 1-containing protein"
                     /protein_id="HVS20660.1"
                     /translation="MSWVKATVRLIHAWRHPDEIAREVEAELRFHIEMRARANIEDGM
                     RPDAARLAALQSFGDFDRVKVRCCEISRGLPFDPSSLRMGLHIAIAGLAGGAALWAVN
                     IPHHNFIGVLWQLAAIAVLTCSFLVGRRNKRPHRH"
BASE COUNT         1309 a         1590 c         1679 g         1247 t
ORIGIN      
        1 tgtctatctg tttcgcggat ttgtcaggcg ggtactctcc accgcagttg atgaagagac
       61 gcaaagcgcg cttgcgccgc gcgtggccat cgatcgcgaa gagctgccgc ttcgccgcag
      121 cctagtctca caaatcatca aacaactggc cgccgctgga gagttgaggg cgatccagcc
      181 actcgccaat agcgatggct gcgtgaacac gatcgcgtcg ctgattggcg agattcagcg
      241 cgcgggaaag acgccgcagg actttcaaac cgtcgttgaa tcacgggcgg ctgaatccgc
      301 atctcaagtc tcaagtctca agtctcaagc tgatcgcaag tctcaagtcg caagtcccaa
      361 gtcgcaagtt gatttcgatc gagaggtggc gctcatttat tcaacgtacg ttgaagcact
      421 cgatcgtttt ggccttacgg atgaagacgc cgatcaactg cgcgcgctgc aagtcctgcg
      481 cggcgaaatt ggtggacgcg ctctttccct gccctggctc gatcaagttg atctattggt
      541 gctcgatggc ttttttgatt tcacgccggt gcagggtgaa atgctgcgtc gtttgatccc
      601 tgcgatcccc aatgtcattg tgaatctgaa tcacgaccag cgaaacgaag aaatatttca
      661 gccgtttcag tcaacgatcg agcaaatcaa atcgatcgcc gccttcgacg acaagttaaa
      721 cgaagaaatc gcggcagtgg aagatgcgtt agcgccgctg cgtgaacgat tgttcaatgt
      781 agcgcaagtt gccaacttgc gtcccagcat agaaccatcg caagttaaca acttgcgcta
      841 catcgagctc ttcgaatgca gcgatcgcga aaccgaaatc cgaagcattg cgaaagagat
      901 caagcaactt gtcttcaacg gagactacaa gttgtccgac atcgcgctgg tcgtgcgcga
      961 gcgcgccgcg tacgcggaga cgatcctgcg cgtctgcgcc gacgaatcga tcccgtgcag
     1021 tctcggacgc cgcgttgaag caaaagagat tcccgccgcg cgcgcctgcg cgaagttgtt
     1081 ccaacttctc aaggaaccgg tgcgcgagca cgcgacgaat ccgaaggcgt gcgaactggc
     1141 gcagcttgtg aagactggtt attttcgcgt ggcgccggaa gagttgctga cgctgaacga
     1201 ggcctttgat aataagtacg cgactcttct gcatagcgag acgccaagcc agacagacgg
     1261 ggaacagagt gatcgggaac gcatcgaacg cttgtgcgcc aagctcggca tcggacgatg
     1321 ggcgccggat attctcgaga atgcgattgc ttatgtcggc agcgagttgc gagttaaagc
     1381 atggctggat cgggctcagc atttgatcga tgtgctgcct tcgcctgaag ccgccaaatc
     1441 atttctcgcg agcgagaatg acaaccaggg agatgacgcc gcggcgatcg cgcaagtcga
     1501 gccgcctccg gacgatgcgc ccgcgaaaga aacgcgcaag cgacccgcgc ccgttcatcc
     1561 agcggttctc gcctggtcca tgctggtgat ggaacacttg cgacagctta tcgcgaacgc
     1621 gccgaatgaa ggcgcgcccg aagaactacg aacagcgctg atgtcgctgc tcgaacgcct
     1681 ggaattctcg aatcaagttc gtcagcctct caacacccgg aattccaccg acgttcctca
     1741 agtcacgctc gacattcgcg gactggagag tttgcgacga gctatgtttg cggctgtccg
     1801 cagctttgat tacgccggac gggttgcgtc gatagcccgc tcgacagcaa gggcacctgc
     1861 gccctccctc acggtcgggc ttctgccctt tattgatgaa gtcgagcgct gtcttcattc
     1921 gcaagtgctc gcgattgctt cgggaaatcg cgacgggttg cgcgtgtttg aagcaaccga
     1981 cgtgcggggt ctgcgatttc gcgccctgtt catcgcggga atgatcgaag ggggattccc
     2041 gctgcgaact gcgcgcgact ggctctatcc gcacgaagag cgcgagcgcc tcaaggatca
     2101 tgacctgtat cttgaggaca tttcggctga aactttgctg aaagaagagc attactttta
     2161 tcaagcagcg tgtcgcgcaa ccgaccgttt gtacttgacg cgcccgttgg cgctcagcga
     2221 tggcagcgaa ccagttgcgt cctactacat cgctgagttg gagcgcgcaa tcgctcctgc
     2281 cgagatcgca accagacaaa ttcgcggcga cgtggacacg catgacgtcg tgcatgcttc
     2341 aactgctgcg gaattagcag tcgatctcgt gcgccagcaa gaacgacaaa gtcatcgcgc
     2401 acgcaacgcg aatctgctat ggccaaccga agttgcccaa ctgatttcaa aggcgcgcac
     2461 gcatggatac ttgcaggatt cagtgttgcg tcgcgtggct atcgaattac agagaaacgg
     2521 cgagtcgttc ggatcgttcg atggtcaaat cacgaatgac gatctgcaag caatgctcgg
     2581 cagtcacttt ggctcggcgc atatttacag cgccagcgcg ttgagcgact acggcaactg
     2641 tcccttccga ttctttgctt cgcgagttct taaacttgag ccgcgcagcg aagcggcgct
     2701 tgatctccag gcgatcgatg cgggcaagct gctgcacgac gtgctgcgac gattctttga
     2761 aaagcaccgc aaccaatacc tgccttcgct gaatcgcgaa gagctgcgta aagaaatgaa
     2821 cgaggttgct gataaggttt tcaaggagca cgaggattta gtgccgccgc taaaccaaag
     2881 gatttggaga attgattgcg agattcgcaa gctgatcctg gagcaagttc tgcttcacga
     2941 attgcgtttg caagagcaaa ccgacaagcg cgggattcgt ccggcttatt ttgaacttgc
     3001 atttgggcgc gcctccgcag cgagtgatcc agattcgtcg ccggaatatt tgaaactgaa
     3061 gcgcaacgac aaaggcgcaa ccgagactgc tttgatccaa ggtcagatcg atcgggtcga
     3121 tgtgaacgag cgcgaccgcg tggccatcgc gtacgactac aaactgtcgc agggcgcgaa
     3181 gctcggcgat attgaggccg ggcgacaagt gcagattccg atctatcttg ccgcgatcga
     3241 gcaacttttc ttaccaagtt tcgaactcgc cggcgggggc tactacacat tgcgcgggcg
     3301 cgggccccgt ctgaaccaag gtctgtatcg gcgcatgttc gaagattgca ctgccgtaac
     3361 aagtcggacg acgaggcttg acgatgaaga gtggcagcgc attcgcagcg aagtgagccg
     3421 gcgcgtctgg caatttatcg acggcatgcg cgtgggcgac ttcaaggtaa agccatcgct
     3481 tggcagagag acttgcaagt tttgcgatta ctcagccgtc tgtcgatacg acacttatcg
     3541 aattagtcga aagcgatcgt gatgctggga gcgcggacgt ctggatcagt cgattctccc
     3601 ttctcccttt gggagaaggg ctggggaaga ggggcgtagc tggtgcgggc tcgatgctca
     3661 ggccctctcc ccgaccctct cccagtggga gagggagatc tcatccgcgc tcccagcaag
     3721 ggagttggat ttattttcct acgatgacgg tgaaccaaga aatgaataac aacgaccagt
     3781 cactgcgcga tcatttgctt tcgctcttgc gtggcggcaa cgcgcacata tcttttgatg
     3841 acttcgtcgc agactttccg gttaacgcct gcggccagaa gattgaaggc ttgccttaca
     3901 ctccgtggca ggtgctcgag cacctgcgca ttgcacagtg ggacattctg gagttctgcc
     3961 gcgatgcgaa gcacgtctcg ccgaaatggc cggaaggcta ttggccaaag cctgacgatc
     4021 tcggcgatgc cgacctttgg aaacaaactg ttgaaaaatt ccgcggcgat ctgaaacaga
     4081 tggaagatct ggtcgcggat cccgcaaccg atctctttgc caaaattcct cacggtaacg
     4141 gccaaacgat cctgcgcgaa gcactgctgg tcgcagatca caatgcttat catctgggag
     4201 cattggtggt aatgggtcgg atcattcgat agcgcggcta gtttttgtcg cggcgtgacg
     4261 ctggcgcagg gaggccccac catgatgcgc tcatgttcca aagtgggcac gaggaacgag
     4321 cgcgagatct tccgcaacct aaaggaggtt gtcaatggcg ctaccgtctg ggtcttctcc
     4381 agcctcagat tatcgccggc tgccaagttg tttcagcaac tcgttcaccg ccgcttcgag
     4441 ctgactgtcc cgcccaagat aactttcacc gacaggcctg tcgaccggca agtcgacggg
     4501 tcgcggatgc atctccatca cggtaccatc gttcgcggtg atccgatcgt aggagcagac
     4561 gcaagttaga gccgtcaatt aactgcacgc ctgacgtgta aatgatccag ccggccgttg
     4621 gctcgccgac gactttgccg agatgcgacg agcgataacc ttccgtgaag tctccggcgt
     4681 cagagagcgt gtggcgatta gtcagatcgg tccaggttgg agtgtcacct ctgtgggtgc
     4741 ttggtgtacg cgactataaa ctttggagtt taagaggcta cctcgttgcg agttcgctgg
     4801 cgcgacctac ccatccttaa tatattttca ctgcccctag acaatctagg tagtccatgc
     4861 tatgcttgcc ctagatcatc taggaggtgc gcggggtgag taaatcaaag gcgggcttac
     4921 ttcaggggac gctggacatg ttgattctga aagccctttc gcttggctct ctgcatggct
     4981 acggagtcgg tcaacgcatt ggacaaatct ccggcgatgc gctcagagtc gaggaaggct
     5041 cgctatatcc aggactttac aggcttgagc ggcgcgggtg gatcgaatcg gagtgggacg
     5101 tctccgaaaa taatcagcgc gcgaagttct acaagctgac ccgcgcgggt cgtaaacaac
     5161 taaccgtcga ggagcagaat tgggagcggc tcgcgggcgc gacaaagaag gcgctacgca
     5221 cggtctgagg aggatgcaaa aaatcatgtc ctgggtcaaa gccacagtca ggctcattca
     5281 cgcctggcga catccggatg agatcgcgcg cgaagttgag gcggaattgc gcttccatat
     5341 tgaaatgcgg gcgcgcgcca acatcgagga cggtatgagg ccagacgcag cgcgacttgc
     5401 agccctgcaa agcttcgggg acttcgaccg agtcaaagtc aggtgttgtg aaattagccg
     5461 gggcctcccc ttcgatccca gttctttaag aatgggattg cacattgcca tcgcaggtct
     5521 cgcgggcgga gcagcactgt gggcggtcaa catcccacac cacaacttca tcggcgtttt
     5581 gtggcagtta gccgcgatcg ccgtcttgac gtgctcgttc ctcgtcggtc gacgaaataa
     5641 aagaccgcac cgtcactaac taattactga aggaggatcg accatgcgcg ttcgcaatgc
     5701 acctaagatc ataaacggtc tgtttacgct gcttatattg attgcgagtt tggcaacaaa
     5761 cgtagcggtg tcggcctcct ccacacctcc cagtaagaag caacagtctg ataacgcgct
     5821 tgcca
//
LOCUS       DASZZE010000119         2992 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_37306, whole genome shotgun sequence.
ACCESSION   DASZZE010000119 DASZZE010000000
VERSION     DASZZE010000119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2992)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2992)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2992
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37306"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..246
                     /locus_tag="VHD88_02370"
     CDS             <1..246
                     /locus_tag="VHD88_02370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20661.1"
                     /translation="FWTVPELRTAWWHLTGPDPTTWSDWQVLLYTAGRAMLWVVVISA
                     VFSMYGYFRAFFSGVVRSEQPKAEAAAASAAVQYHER"
     gene            complement(462..1679)
                     /locus_tag="VHD88_02375"
     CDS             complement(462..1679)
                     /locus_tag="VHD88_02375"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metalloprotease"
                     /protein_id="HVS20662.1"
                     /translation="MKSRLSRAVAAIGLGTSLWMTSVAAFAVPQQPQDSTKGQNQPAT
                     APAGQKDQTATTTPQSSAPQPASQPTNNKSLPVNDDPTMIGKRNINKGLWGKIAAGTE
                     KEVRAGRMLAAEVDKEAKFVDDPIITEYINRVGQNIVLHSDAKVPFTIKVIDSDEVNA
                     FALPGGFFYVNKGLILAADNEAELAGVMAHEIAHVAARHAMENERKMEIMNYGVLAGI
                     LLGGPIIGNVLYNGGGFFEGMAFLKFSRAAEEEADRLGVQYMWAAGYDPGAMATMFEK
                     LEAKNKKKPGFLAKTFADHPAPAGRRASALALAARFPERDEYVISSSEFQRVKNRLLR
                     LSNARASSTGAIASDDNGSSGRPTLKRRQPTPDDSTTTTTDGNQQKPDANQPGPPKLK
                     REGQPQPSPTPQP"
     gene            1983..>2992
                     /locus_tag="VHD88_02380"
     CDS             1983..>2992
                     /locus_tag="VHD88_02380"
                     /inference="COORDINATES: protein motif:HMM:NF022187.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rossmann-like and DUF2520 domain-containing
                     protein"
                     /protein_id="HVS20663.1"
                     /translation="MVKSKSKRDLVLSMPKWKNKLGARGSRPRPARRKKARIAIVGAG
                     RIGTALGCALNEIGYRIEVVVTQHAASAGRAAQLISADILWLTSRQLDRLKPAEYDRI
                     ARCDLILIATPDDVIASVAQQLVRILNLRASRGQAALSKRRFAIHVSGALASEVLQPL
                     RKAGFATASLHPLVSVSNSLSSNDLFRGAFFCIEGERSALGVARSIAHDLGGKSFTID
                     PNSKALYHAAAVTASGHVVVLFDIALEMLGRCGLSPRRAQKVLLPLLESTVTNLSTND
                     PAHALTGTFARGDLTTVTKHLAAIESQKLRDALAAYVLLGQRSLSLAKGRAGFDQIAG
                     LLA"
BASE COUNT          576 a          876 c          861 g          679 t
ORIGIN      
        1 ttttggaccg tgcctgaatt gcgcacggcg tggtggcatc tgaccgggcc tgatccaacc
       61 acgtggagtg actggcaggt gctgctttac accgcaggcc gcgccatgct ctgggtcgtc
      121 gtcatctcgg cggtattttc gatgtatgga tactttcggg ctttcttctc aggcgtagtt
      181 cgtagcgaac agccaaaagc ggaggctgca gcggcatccg cagccgtgca gtatcacgaa
      241 cggtaggcga tcgtgtcaga agcccgcgcg ttagcaaggg caccgaaaga aaaaagagga
      301 gcctcatggt cgggctactg gccgttgaga cgtacgggca cccttaaaaa aggctctcaa
      361 gcagcattgc ttgagagcct ctctaatctt gggactaccc acccgctaac gcaggtggta
      421 ctgacaacgc cctctctcac gatcgggctt ctgacacacg ctcacggttg cggcgtcggt
      481 gacggttgtg gttgtccttc gcgcttcaac tttggcggac cgggctgatt ggcatcaggc
      541 ttttgctgat tgccgtccgt cgtggtcgtc gtcgaatcgt ccggcgtcgg ttgccgccgc
      601 ttcagagtcg ggcgacctga ggatccattg tcgtcgctgg cgattgctcc ggttgaagat
      661 gcgcgcgcgt tagaaagcct cagcaacctg ttcttgactc gctgaaactc cgacgagctg
      721 atcacatatt cgtcgcgttc cggaaatcgc gccgccagag ccaacgccga cgcgcggcga
      781 cccgcagggg ccggatgatc cgcaaaagtc ttcgcgagaa agcccggctt ctttttgttc
      841 ttagcttcca gcttctcaaa catcgtggcc atcgcacccg gatcgtaacc ggcagcccac
      901 atgtattgca cgccaagccg atcagcctct tcctcagcgg cgcggctgaa cttcaaaaag
      961 gccattcctt caaagaatcc gccaccgtta tagagcacgt tgccgataat cgggccaccg
     1021 agaagaattc cggccagcac gccgtaattc atgatctcca tttttcgttc gttctccatc
     1081 gcgtggcggg ccgcgacgtg agcaatctca tgcgccatca cgccggcgag ttcggcctcg
     1141 ttgtcggcag ccagaatcag ccccttgttt acgtagaaga aaccgccggg cagcgcgaac
     1201 gcattcactt cgtccgaatc gattactttg atcgtgaacg gaacctttgc gtctgagtga
     1261 aggacgatgt tctggccgac gcgattgatg tattcggtga ttatcggatc gtcgacgaac
     1321 ttggcctctt tatcgacctc agcggcgagc atccggcccg cgcgaacttc tttttcggta
     1381 cccgcagcta tctttcccca cagacccttg ttgatattcc gtttcccgat catcgttggg
     1441 tcatcgttca ccgggagcga cttgttgttc gtcggctggc ttgcgggctg cggcgcgctg
     1501 ctttgcggtg tcgtggtcgc tgtctgatcc ttttgccccg cgggcgcagt ggccggttga
     1561 ttctgaccct tcgtcgaatc ctgcggctgt tgcggcacag cgaacgcggc cacgctcgtc
     1621 atccacagac ttgttcccag gccgattgcc gctacggcgc gagagagacg acttttcatt
     1681 tgaacctcca accttttcgt ggccgggaga gaaagaccgg gcttaatctc tcggtgggcc
     1741 gcaaccagcg agcatgacgg ccgctttcgt ttcttcttaa gaaacagcac cctgaggcat
     1801 cggcactgct ttcaattaac gcacgcttgg atgccgtgtt tgaatccgag gttgcgcaag
     1861 cgctgaactt gttagttcaa attaaatctg acgagaactc gcaactttga cggcgtccat
     1921 gtccaagcat tataggcccg tgaaacgaaa aagactatgt aaattgcggc gctctcgggc
     1981 gcatggtaaa gtccaaatcc aagcgcgacc tggtgctgtc gatgccaaag tggaagaaca
     2041 aattgggcgc aagaggctcg cggccgaggc cggcgcgccg gaaaaaggcg cgaatcgcga
     2101 tcgtcggcgc aggccgaatc ggaacggcac tcggttgcgc gctgaatgag atcggctacc
     2161 gaattgaagt tgtcgtcacg cagcacgctg ccagcgcggg gcgcgcggcg caacttataa
     2221 gcgctgacat tctctggctg acctcgcgac aactcgatcg gctgaagcct gccgagtatg
     2281 accgcatcgc tcgctgcgat ctaattctca ttgcgactcc agacgacgtg atcgcgtctg
     2341 tggcccaaca gctcgtgcgt attttgaatt tgcgagcgag ccgcggtcag gcggcgcttt
     2401 cgaagcgtcg atttgccatt catgttagcg gcgcgcttgc ttccgaagtt ctgcaaccgt
     2461 tacgcaaggc tggttttgct accgcttcgt tacatccgct ggtttccgtc agcaattcgc
     2521 tttccagtaa cgatctgttt cgtggcgcgt tcttttgcat cgaaggcgag cgttcggctc
     2581 taggcgtcgc acgatctatt gcgcacgacc tgggcggaaa gagtttcacg atcgatccaa
     2641 attcgaaagc gctctaccac gccgccgcag tcacagcttc gggacacgta gtggtgctgt
     2701 tcgacatcgc attggagatg ctcggacgct gcggcttgtc gccgcgccgc gcgcagaagg
     2761 ttctgctgcc attgttggag agcacggtga caaatctctc gacgaatgat ccggcacatg
     2821 cattgacggg cacgttcgcg cgaggcgacc taaccaccgt gacgaagcat ctagcggcga
     2881 tcgaatcgca gaaactgcgt gacgcgctgg ccgcctatgt cttgctgggc caacgctctc
     2941 tttcgctggc gaaaggccgt gccggctttg atcagatcgc cggactccta gc
//
LOCUS       DASZZE010000120         2395 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_183797, whole genome shotgun sequence.
ACCESSION   DASZZE010000120 DASZZE010000000
VERSION     DASZZE010000120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2395)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2395)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2395
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183797"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..544)
                     /locus_tag="VHD88_02385"
     CDS             complement(<1..544)
                     /locus_tag="VHD88_02385"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HVS20664.1"
                     /translation="MPFRLQSTYQPCGDQPQAIDALVRGLGDGTQDQVLLGITGSGKT
                     FTVASVIQRTQRPALVIAHNKTLAAQLYQEFKSLFPENSVEYFVSYYDYYQPEAYVPA
                     SDTYIEKDAIVNEEIDRLRMSATRALFERRDVIVVASVSCIYGLGDPDAYYGMLVFLE
                     PGMKIARDTLLQRLVELQYER"
     gene            759..974
                     /locus_tag="VHD88_02390"
     CDS             759..974
                     /locus_tag="VHD88_02390"
                     /inference="COORDINATES: protein motif:HMM:NF016167.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF433 domain-containing protein"
                     /protein_id="HVS20665.1"
                     /translation="MSASELITTDPDILGGTPVFKGTRVPVKTLFDYLENDYSLEEFL
                     ECFPSVTREMARDLLECSGQALLSPAA"
     gene            1029..1229
                     /locus_tag="VHD88_02395"
     CDS             1029..1229
                     /locus_tag="VHD88_02395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20666.1"
                     /translation="MRATNPEPEIVMRKGKPVSVIIAIKDYEELLERAEDAEDVAWLK
                     RARRRKLQYRPLEEYLAKRNGK"
     gene            1232..1486
                     /locus_tag="VHD88_02400"
     CDS             1232..1486
                     /locus_tag="VHD88_02400"
                     /inference="COORDINATES: protein motif:HMM:NF016876.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008657 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) inhibitor activity
                     [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_process: GO:0030541 - plasmid partitioning [Evidence
                     IEA];
                     GO_process: GO:0051290 - protein heterotetramerization
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HVS20667.1"
                     /translation="MYRVFLARSAEKDLGRLSPDVHDRVIAAIHRLARNPRPPGCRKL
                     VGADNDWRIRVGDYRVVYEIADTLRVVRVNRVRHRREVYR"
     gene            complement(1564..>2395)
                     /locus_tag="VHD88_02405"
     CDS             complement(1564..>2395)
                     /locus_tag="VHD88_02405"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HVS20668.1"
                     /translation="EKVDYPFEIERPEVDEPTASSVGNKTTEIVEWFDVGFEHERAAG
                     APGAPQLLPEDHFAPIHEDAGGEFRAVSVPETETVERTAVPTGTIGQLSSQKSGERAA
                     AVADLARFGGEDSFRHITAAFDDQSAEVRSAAARALFEIQDDRAAAFTRALREATPER
                     RRKIGASIASSGLASEAIRNLTGESRDKTYDAFSLLFLMSKAGEVQPLMRAIEEHSNI
                     EVRLAVVKLLALSGQPDILPAFRRMAVRGSLPPEVRSAVMEAIYQITSQSPADAPSMV
                     "
BASE COUNT          519 a          677 c          691 g          508 t
ORIGIN      
        1 tacgctcgta ctgcaactcg accagacgct gcagtaaggt gtcgcgcgcg atcttcattc
       61 ccggctcgag aaaaaccagc atgccgtagt acgcgtcggg atcgccgaga ccgtagatgc
      121 acgacacgct ggcaaccacg atcacatcgc gccgttcgaa caacgcgcgc gtcgccgaca
      181 tgcgcaggcg atcgatctct tcgttaacga tggcgtcttt ttctatgtag gtgtccgacg
      241 cgggaacgta agcttccggc tggtaatagt cgtagtacga aacgaaatac tcgacggagt
      301 tttcgggaaa gagtgacttg aattcctgat aaagttgcgc ggcgagtgtt ttgttgtgcg
      361 cgatcacgag cgccggccgt tgcgtgcgct ggatgacgct ggcaaccgtg aaagttttgc
      421 cactgcccgt gatcccgagc agaacctgat cctgcgtccc gtcaccaagg ccgcgtacca
      481 acgcatcgat cgcctgtggc tggtcgccgc agggctgata ggtcgattga agccgaaagg
      541 gcataaccga taatagtaaa tggtaaatgg tgaatcgtaa atcggcggca agctggagta
      601 gtgggtcagt ttagttcaga gttcaacctt taggttgctg tttgccaggc gcaagctaaa
      661 gcttgatgaa ctctaaactc acccactacc caagctgggt atcttggacg aggagagcga
      721 catttacgcc gaagcctgac ctgaactaaa ctgccatcat gagcgctagt gaattgatca
      781 cgaccgaccc cgatatcctc ggcggcacac cggtgttcaa gggcacacgc gtgccggtga
      841 agactctgtt cgactatctg gagaatgact actcgttgga agaattcctt gagtgctttc
      901 catcagtgac ccgggaaatg gcccgtgact tgttggaatg ctctgggcag gcgttgcttt
      961 ctccagcagc atgagaatcc tccccgacga ggtttacgcg accgcgtagc agtgttaagt
     1021 taacgactat gagagcgacc aatcccgaac cggagatcgt gatgcgaaag ggcaagcccg
     1081 tctcagtcat cattgcgatc aaggactacg aggagcttct ggagcgagcc gaagacgcag
     1141 aggatgtggc ttggctcaag cgagcccggc gaaggaagct tcagtaccgc ccgttagaag
     1201 agtacctggc gaaacggaac ggcaaatagt catgtatcgc gtcttcctcg cgcgctctgc
     1261 tgagaaggac ctcgggcgcc tttcgccgga cgttcatgat cgcgtgatag cagcgattca
     1321 ccgcctggca agaaatccgc gtccgcctgg ttgtcggaag ctcgtaggag cagataacga
     1381 ctggagaatc cgcgtgggcg attaccgcgt cgtttacgaa atcgctgata ccctgcgagt
     1441 cgtgcgcgtc aaccgcgtcc ggcaccgccg cgaagtctac cgctagtcac actgctgcat
     1501 tagtaaaatg tttgattgat ctacgccttc ttcgcgtccg atacaccctt gacgtgtgcc
     1561 gctttacacc attgacggcg cgtcggcagg cgattggctg gtgatttgat agattgcttc
     1621 catcacagcc gaacgtactt caggtggcag cgatccgcgc acggccatgc ggcgaaacgc
     1681 cggcaggata tccggttggc cgctgagcgc gagcagcttc actaccgcga gtcgtacttc
     1741 gatgttcgaa tgctcttcga tcgcgcgcat caacggttgc acctcgccgg ctttagacat
     1801 cagaaacaat agagagaagg cgtcataagt tttgtcacgg ctctcgccgg taagatttct
     1861 tatggcttcg ctggccaggc cagacgaagc gattgatgcg ccaatcttgc gccgccgttc
     1921 gggcgttgct tcgcgcagcg cgcgagtgaa agccgcggca cgatcatcct gaatctcaaa
     1981 cagcgcgcgc gcggcggcac tgcggacttc ggccgactga tcgtcaaacg ccgcggtaat
     2041 gtgacggaac gaatcttcgc caccgaatcg cgccagatcg gcgaccgcag cagctcgctc
     2101 gccagatttc tgactgctga gttgaccgat cgtgccggtc ggcaccgcag ttctttcaac
     2161 ggtttcggtc tccggcacgc tgacagcgcg gaattcaccg ccggcatcct catgaattgg
     2221 cgcaaagtga tcttcaggca agagttgcgg cgcgccaggt gctcccgccg cgcgctcgtg
     2281 ctcgaagccg acgtcgaacc actcaacaat ctcggtggtc ttgttgccaa ccgaactcgc
     2341 agtcggttcg tcaacttcag gccgttcgat ttcgaagggg tagtcaacct tctca
//
LOCUS       DASZZE010000121         3200 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_117505, whole genome shotgun sequence.
ACCESSION   DASZZE010000121 DASZZE010000000
VERSION     DASZZE010000121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3200)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3200)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3200
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_117505"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            424..1476
                     /locus_tag="VHD88_02410"
     CDS             424..1476
                     /locus_tag="VHD88_02410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20669.1"
                     /translation="MPNRTVRRLAGHMRPGITLALAIVLLTGAGCHLVHKPVEIEKLL
                     TPLSEANTAQLIAEVNRFAGVRSIHGKIDIQFEDTSFATSGIAEKYRTADGSITLQRP
                     GKVYLDVLGPLAIDVAQMTSDGEHFRIAILKGDEKYHRFVRGTNSAVYSQLDGNAAGD
                     PGKKGKPNNEAQAVKALSNLRPQHLTDALLIPPIDQRAAGLLYAQSEFFQSEKDTSQP
                     MSKKRVLRGYYLLDELQPRENGSARLLRRFWFDRVAGIRLARLQTFNDNGVLVTDVSY
                     ADLKKFGLEGNVLLPAQIGLTRPQDHYKITITYQAPESVTLDHDYPSDAFVLSNKWNL
                     QEVDLDTQKNPAPPKN"
     gene            1508..2020
                     /locus_tag="VHD88_02415"
     CDS             1508..2020
                     /locus_tag="VHD88_02415"
                     /inference="COORDINATES: protein motif:HMM:NF013989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HVS20670.1"
                     /translation="MRRIRYAVAASLDGYIAGPKGEADWIIMDPAIDFNSFFQQFDTV
                     LLGRRTFETMARGGNAGMPGMKTFIFSRTLRQGDYPEVTIVAENSEETLAALRQQSGK
                     DIWLFGGGSLFRSLLDAGLVDTVELAIIPVLLGEGIPLLASPAKGTKLKLTCHKVYKT
                     GIVSLEYTVQ"
     gene            2276..>3200
                     /locus_tag="VHD88_02420"
     CDS             2276..>3200
                     /locus_tag="VHD88_02420"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HVS20671.1"
                     /translation="MDSLVTSNVRQRPLRSAISVLGVALGVTLVMLFTGLARGMSNDL
                     QRRSSNVRAEIIFTRPGSIQLTSSSANLSTKYVDQLKQIDGVEAVVPVIRHLYQGNSG
                     FGLDQIEGVDWDGFAKMNDIRLIEGQPPRALDEVVIDETKAGRNHPVGSLVNLFGDKP
                     FRVVGIYSPESGARVKISLEAMQNAIEAPGKCTYILVKCKSPSEQVAVAKRIDEKLPG
                     NKVQFTRDVFANVESSIPSLTIFLRVLVGLAAVVSALVIMLAMHTTITERTREIGILK
                     AMGASRSYIISEIEREALLISAMGLVVGFAFA"
BASE COUNT          696 a          873 c          917 g          714 t
ORIGIN      
        1 gcaaagaagc cgagaaatca cacgtgatgg aaattggctg cggatgtgag catacgcctt
       61 gtcgctgacg ggcccgggaa tctcctttag cctcggttta cgttggacgc ctcggtcggc
      121 tcgcattgga atggcggcaa cctgcgtttg gaaagcgcac gactttcaat ctgtcgatta
      181 gcagcacagc gaacgcgggc aatccgtaaa cctgttcgcg ccattccgga aagcgcgctt
      241 aggccatcaa tcgcggcggt gcggagcgat tcgcgtcgcc gcgtttttgc tcctgagtag
      301 cttgagcctt tgggttggtc gcgcgttgac atcgcgaacc tgctttgcta gcgtcaaccc
      361 gcactgaaag aaccacactc aaaacatcgc gccggcgctt gcctcagcgc cggcattaaa
      421 ttgatgccta accgcactgt tcgtcgtttg gccggccaca tgcgaccggg aattacgcta
      481 gcactcgcaa tcgtcctgct aaccggcgcg gggtgtcatc tcgtgcacaa acctgtcgag
      541 attgaaaaac tgcttacgcc gttgtctgag gcaaacactg cgcagctcat cgccgaagta
      601 aaccgattcg ccggagtgcg ttccattcac ggcaagattg atatccagtt tgaagacact
      661 tcgttcgcca cttcgggtat agctgagaaa tatcgcactg ccgatggatc gatcacgctg
      721 caacgcccgg gaaaggtcta tctcgatgtg ctagggccgc ttgctattga cgtggcccag
      781 atgacttctg atggcgaaca tttcaggatc gcaatcctta aaggcgatga aaagtaccat
      841 cggtttgtgc gcggtacgaa cagcgctgtc tattcgcagt tggatggcaa cgccgccggc
      901 gatccgggca agaagggaaa accgaacaat gaagcgcagg ccgtgaaggc gctttcgaat
      961 ctgcggcccc agcaccttac cgacgcgctg ctaattcctc cgatcgacca acgcgcggct
     1021 gggttgctgt atgcccagag cgaattcttt cagtcggaga aggacacgag ccagccgatg
     1081 agcaagaaac gcgtactgcg cggctactat ctgctcgacg aattgcagcc gcgggaaaat
     1141 ggttcggctc gtttgttgcg gcgcttctgg tttgatcgag tcgctggcat ccgactcgcg
     1201 cgtctgcaga ccttcaacga caatggcgtg ctggttaccg acgttagtta tgccgatcta
     1261 aagaagtttg gcttggaagg caacgttctg ctgcccgcac aaatcggttt gacgcgacct
     1321 caggaccact acaagatcac gatcacttac caggcgccag agtccgtaac cctggatcat
     1381 gactatccct ctgacgcttt tgtgctctcg aacaaatgga accttcagga agtggatctc
     1441 gacacgcaga agaatcccgc cccgccgaag aactagtttg acagcgcgaa ttttgcatgg
     1501 aggggttatg cgacgtattc gctatgcggt tgcagcaagt ctggatgggt acatcgccgg
     1561 gccaaagggc gaagcggact ggatcatcat ggatccggca atcgatttca actctttctt
     1621 ccaacagttc gacacagtgc tcctgggacg tcgaacgttc gagactatgg cgcgcggcgg
     1681 caacgccggg atgcccggca tgaaaacttt tatcttttct cggactctgc ggcaaggcga
     1741 ttatccggaa gtgaccatcg ttgctgagaa ttcagaagag acgctggctg ctctgcgcca
     1801 gcaatcgggc aaggacatct ggttgttcgg gggcggttca ctctttcgca gcctccttga
     1861 cgcggggctt gtcgatacgg tcgagctcgc tatcatcccc gtacttctcg gcgaagggat
     1921 tccgctgctt gcatcgcccg ccaagggaac gaaactaaag ctgacctgcc acaaagttta
     1981 caagacaggg atcgtttcat tggagtacac agtccagtga accgctgtcg aacaaatcgg
     2041 gtgagccgcg gtagcgcgtc tctcaactcg aaatatagaa tccacgttgt gtgccgccgc
     2101 gcggccacct gaactcagac gttctaacgc agcaggcccg gccgcctgtg cccagctact
     2161 tcgtttgcgc gtctttgtag tgcgattcgg cgcccaatgg ctgctagctt agctagctag
     2221 gtgttcgtct ccgcatgtat taatattccc gttctgagtt atcgagcgcg ttttcatgga
     2281 cagtctggtt acctcaaacg tccgacagcg gccactacgt tcggcaatca gtgtgctcgg
     2341 cgtcgcgctc ggcgtgacgc tggtaatgct gtttactgga ctcgcgcgcg gcatgtccaa
     2401 cgacttgcag cgacggtcgt caaacgtgcg cgcggagatc atttttacgc gaccgggctc
     2461 gatccagttg acttcgtcct cggcaaattt gagcacgaag tacgtcgatc aattgaaaca
     2521 gatcgacggc gttgaggcgg tcgtgcctgt gattcgccat ttgtatcagg ggaattcggg
     2581 gttcggctta gatcagatcg agggagtcga ctgggacggt ttcgcgaaga tgaatgacat
     2641 ccgtctaatc gaaggccagc caccgcgcgc actcgacgaa gttgtgatcg acgagacaaa
     2701 agccggacgg aatcatccgg tgggaagctt ggtaaatctt ttcggcgaca aaccgttccg
     2761 agtcgtggga atctattcgc cagaatccgg cgcccgcgtc aagatttcgc tggaagccat
     2821 gcagaacgcc atcgaagctc cgggcaagtg cacttacatt ctggtcaaat gcaagtcccc
     2881 gagcgagcag gtcgcagtcg cgaagcggat tgacgaaaag cttccaggaa acaaagtgca
     2941 gttcacccgt gatgttttcg ccaatgtcga aagttcgatt cccagtctga caatcttttt
     3001 gcgggtgctg gtcgggctgg cggccgttgt gagtgcgctc gtcataatgc tggcgatgca
     3061 cacgaccatc actgagcgca cgcgcgagat tggaatcctg aaagcgatgg gcgcctcgcg
     3121 cagctacatc atcagcgaga ttgaacgtga agcgctctta atcagcgcga tgggtttggt
     3181 ggttggcttt gcatttgcgg
//
LOCUS       DASZZE010000122         2374 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_148524, whole genome shotgun sequence.
ACCESSION   DASZZE010000122 DASZZE010000000
VERSION     DASZZE010000122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2374)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2374)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2374
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148524"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2374)
                     /locus_tag="VHD88_02425"
     CDS             complement(<1..>2374)
                     /locus_tag="VHD88_02425"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HVS20672.1"
                     /translation="DAERLAAYKIPITAVRDALQRQNADVPGGNVETGRRELVLRTLG
                     RYTNPRDMEELVVTNINGAPIKIRDIGRVEDGTKEQRSIARLNGQPTVTLEVRRQSGA
                     NTVEVIHNVKDQLARVSAQLPADIKLETIRDQERYIDAALHEITRHLILGSILASLVV
                     LLFMRSWRSTLIAAIAIPCSVVSTFGMMRAMNFTLNGVTMLALVLMVGVVIDDAIVVL
                     ENIFRFVEEKRITPMRAAKEATADIGLAVMATTFSLVVIFLPVSFMSSISGRFLFQFG
                     ITAAVAVLVSLLVSFTLTPMMSARLLRAEDAAAGHAGHHDTISSAASRRGFYVLIDRS
                     YTSLLRLAMRHRAVVAVIAIAVALSSIPLYRVVKQEYIPSDVDEAEFDVNVNAPEGTN
                     IEAMNDAVLAVEKDLLSTPGVRLILSSSGGSFLGAVNSASVYVRITPHEERVFSLTKL
                     WNSIKSGHPLAAFRGNYTQRDVMQEVRQRVQKYAPLRFSVRNAPSFNIGGGNFDIDFV
                     FRGPELTELAKYADTLRQKTKEIGGIVDADTTLKLDKPELRVHINRERAADLGVDTSN
                     ISTALRLMVGGDDQVSRFRDPSVNEDYDVQLRLSERDRKDAATISRLYVPSTRAGLVR
                     IDNLVDIKEELSPSRIDRLDRQRQASMRAGVAPGFALADRLDALRKTAAAMNLPAAYS
                     TIVAGRGRELERTFVEFLWAFLLSIIFMYMILASHFESTIHPFTILLSLPLSVPFALL
                     SLWLLSDTLNLYSALGILVLFGVVKKNAILQIDHMNNLRTLGMERDAAIIQ"
BASE COUNT          536 a          698 c          676 g          464 t
ORIGIN      
        1 cctggatgat cgccgcatcg cgctccatgc cgagcgtgcg cagattgttc atgtgatcga
       61 tctggagaat cgcgttcttc ttcactacgc caaacagcac cagaattccc agcgccgaat
      121 acaaattcag cgtgtcgctg agcagccata acgaaagcag cgcgaaggga acggagagcg
      181 gcaggctgag caggattgtg aacgggtgaa tcgtgctctc gaagtgtgac gccagaatca
      241 tgtacatgaa aatgattgag agcaaaaacg cccagagaaa ctcgacgaag gttctttcca
      301 attcacgacc gcggcccgca actatggtcg aataagccgc cggcaagttc atcgcggctg
      361 cggttttccg caaggcgtcg agtcgatcgg cgagcgcaaa tcccggcgct accccggccc
      421 gcattgacgc ctgccgctgc cgatcgagtc gatcaatgcg cgaaggactc agctcttctt
      481 taatatctac gaggttatca atccgcacga gtccggcccg agtcgagggc acgtacagac
      541 gcgaaatagt tgcggcgtct ttgcgatcgc gctcacttaa ccgaagctgg acgtcgtagt
      601 cttcattcac ggaagggtcg cgaaaacgcg agacttgatc gtcgccaccg accatcaagc
      661 ggagggcggt tgagatgttc gaagtgtcga cgccgagatc agcggcacgt tcgcgattga
      721 tgtgcacgcg cagctccggc ttgtccagct tcagggtcgt atcagcgtcg acgatgccgc
      781 cgatctcttt cgtcttctga cgcagcgtgt cggcgtactt tgccagctca gtcaattccg
      841 gccctcgaaa cacaaaatca atgtcaaagt tgccgccgcc aatattgaaa gacggcgcgt
      901 tgcggacact gaaacgcagc ggcgcatatt tctgcacccg ctgccgtacc tcctgcatca
      961 cgtcgcgttg cgtgtagtta ccccggaacg ccgccagcgg atgtccgctc ttgatcgagt
     1021 tccaaagctt cgtcaacgag aacactcgct cttcatgcgg tgtgatgcgc acatagacac
     1081 tggccgaatt caccgcgccc aaaaacgatc cgcccgacga cgaaagaatc aggcgcacgc
     1141 cgggcgtgga aagcaaatct ttctcgacgg cgagcacggc atcattcatc gcttcgatgt
     1201 tggttccttc gggcgcattg acgttgacgt cgaattccgc ttcgtcaacg tcgctgggga
     1261 tatattcctg cttgacgacg cgatagagcg gaatgctgga cagcgcgacc gcaatcgcaa
     1321 tcaccgcaac aaccgcgcga tggcgcatgg ccagtcgcag aagcgaggtg tacgagcgat
     1381 cgatcagcac atagaaaccg cgacgcgaag cggcggatga aatcgtatcg tgatgtccgg
     1441 cgtgaccagc cgcggcgtct tcggcgcgca gcaaacgcgc gctcatcatc ggcgtcagcg
     1501 tgaacgaaac cagcagcgaa accaggacag caacagccgc ggtgatgccg aattgaaaaa
     1561 gaaagcgtcc cgaaatcgac gacatgaaag agacgggcag gaagatcacg accagcgaaa
     1621 acgtcgtcgc catcacggcg agaccgatgt cggcggttgc ctcttttgcg gcgcgcatgg
     1681 gcgtaatgcg tttctcttcg acaaaacgaa agatgttttc taaaacgaca atcgcatcgt
     1741 caatcacgac gccgaccatc aacacgagcg ccagcatcgt gacgccgttg agcgtaaagt
     1801 tcatcgcccg catcatgccg aacgtcgaaa ctaccgaaca cggaatcgca atcgctgcga
     1861 tcaaagtcga tcgccacgag cgcatgaaga gcagcacgac caaactggcg aggatgctgc
     1921 cgaggatcag atgccgggtg atctcgtgca gcgccgcgtc gatgtatcgt tcctgatcgc
     1981 gtatggtttc cagtttgata tccgcaggca gttgcgctga gacgcgcgcc agttgatcct
     2041 tcacgttatg gatgacttcg actgtattcg cgcccgattg gcgacggact tcaagcgtta
     2101 cggtcggctg gccattcagc cgcgcgattg aacgctgctc tttggtgccg tcttcgacgc
     2161 ggccaatgtc gcgaatcttt atcggcgcgc cgttgatgtt cgtcacgacc agttcttcca
     2221 tgtcgcgcgg gttggtgtag cggcccagcg tgcgcaggac cagttcgcgc ctgccggttt
     2281 cgacattacc tccgggcaca tccgcgttct ggcgctgcaa agcatcgcgt accgccgtaa
     2341 tcggaatctt gtaagccgcc agccgctcgg cgtc
//
LOCUS       DASZZE010000123         8668 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_281320, whole genome shotgun sequence.
ACCESSION   DASZZE010000123 DASZZE010000000
VERSION     DASZZE010000123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8668)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8668
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281320"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..851
                     /locus_tag="VHD88_02430"
     CDS             <1..851
                     /locus_tag="VHD88_02430"
                     /inference="COORDINATES: protein motif:HMM:NF024491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphatidylserine/phosphatidylglycerophosphate/
                     cardiolipin synthase family protein"
                     /protein_id="HVS20673.1"
                     /translation="NLFDQELRCEARETTNMMRLLNDAGVAIKFTNPCGLSPRKILSR
                     NHKKLIVVDDCVSYIGGINFSEHNAAWHDMMLRIEGQEAEFLREDFLATWIGRDRVTR
                     REFDGLQLYTLDGRENRAGFQRVLDLIDDARQTIFVESPYITFPFYERLREAARHGVD
                     VKIVTPEQNNWSYFAKYARVESARSQIDLRLYQGGMSHLKAMLIDDEFLIAGSSNFDY
                     LSYRLYQEVLAVITASEVIAEFRERVMLRDLARSVAVNCHASAVGKHWLSFQTRLLDA
                     ALTILT"
     gene            complement(809..1774)
                     /gene="lipA"
                     /locus_tag="VHD88_02435"
     CDS             complement(809..1774)
                     /gene="lipA"
                     /locus_tag="VHD88_02435"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF009544.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016992 - lipoate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009107 - lipoate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HVS20674.1"
                     /translation="MLSPNGVIQLARELQVLNQKPRQPKPEWLRIRLGDPTNQNHLLK
                     LIQGLNLHTVCQEAKCPNIFECWSDRTATFMLGGDICTRHCGFCAVGKGEPGQLDSEE
                     PRHVGEAVKHLNLAHTVITSVNRDDLPDGGAAHWAETIRQVRALNPECKVEVLIPDFN
                     GDEDALNTVLDAAPDVLNHNTETIARLYRRVRPDADYQQSLTLLKRAAERRDREQRGM
                     ITKSGIMVGLGETFDEVVELMKDLRAVSCDVMTIGQYLQPHPRRLPVERYVTPEEFDR
                     WRDIGMEMGFKHVQSSPLTRSSYHAREQADDSHVRIVSAASSNLV"
     gene            1887..2474
                     /locus_tag="VHD88_02440"
     CDS             1887..2474
                     /locus_tag="VHD88_02440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20675.1"
                     /translation="MKRTLILGAVICALLASGIYAFGDIARPRVTPTPKEGKVVLYTS
                     MIVKPDAKAYEARLQISQHTLQSIAREAANTSSDQSMTQRLMHSSTRTMMAGLFMFLA
                     VSFAGVWFARSSQRRNQKAIAAVIMIAAVFGLATVIVRANAGPPGYIRWQGLPQALKD
                     GKPTSGGVNIEIVPGDDSEIKLIVPLRNSNRPGEE"
     gene            2629..3600
                     /locus_tag="VHD88_02445"
     CDS             2629..3600
                     /locus_tag="VHD88_02445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20676.1"
                     /translation="MSARLFVVMLIASACISAAMASWLPLQFSIVTVFLFAGPHNWFE
                     LRYFLMRLPARFGRSRNFFVVAFAGIGVLTLAYVSMPALYYTNVWSGANWPTAIASWN
                     TLLLLWLGTLVLLRGKQKVNRDCFWVLPISFGLCALNWLAPELFSLAIVYLHPLVALW
                     FFDRHLRRTRPDWLRTYHRCLALLPLLMLGMFWQLARTPSLADDNGLAWRITQHAGGQ
                     LLPNVSTHLLVSVHVFLEMLHYGVWIVALPLIGATGAVWSVKTIPLARRRGGFPKLIA
                     AVLVFGLFVVALLWFGFSVNYAAMRDVYFAVAIAHVLAEAPFLLRMI"
     gene            3796..4191
                     /locus_tag="VHD88_02450"
     CDS             3796..4191
                     /locus_tag="VHD88_02450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20677.1"
                     /translation="MSPHDLWHFFPLGYLFSILIETPVLVIGLSKRHSLKRKLFAGVW
                     LTACTYPIVVLVLPMLFVNRSRILYLIVAEVFAPVAECVLFWLAFGSEEEVGKGSMWR
                     DFIAIVAANLGSFAGGEGLNAYGWFGLFG"
     gene            complement(4381..5346)
                     /locus_tag="VHD88_02455"
     CDS             complement(4381..5346)
                     /locus_tag="VHD88_02455"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine dehydratase"
                     /protein_id="HVS20678.1"
                     /translation="MLTLELIKEAAARIAGRIHRTPVVTSHSFNEVAGCEVVFKCENL
                     QRAGAFKARGATNRILSLTDDEKRRGVIAVSSGNHAQAVALAAREAGVRAVVAIPADA
                     PKMKVAATREYGADIRFFDRQHDDREKFGRDIAESEGLTMVPPYDDYLVMAGQGTCGL
                     EFLEEVPNLDCILTPCSGGGLFVGVSTAAKSINPSIKCFAVEPETASDTQQSFRKGER
                     VSIPPPPTIADGLRVQTPGALTFPILQTVAEDVFTVSDDEIVAAMKFMLFRMKLLVEP
                     SGAAAAAAVLARKVPADFKRVGVVLSGGNIDPDVLSRLLGQGEGQ"
     gene            complement(5393..6079)
                     /gene="lipB"
                     /locus_tag="VHD88_02460"
     CDS             complement(5393..6079)
                     /gene="lipB"
                     /locus_tag="VHD88_02460"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: protein motif:HMM:NF010925.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033819 - lipoyl(octanoyl) transferase
                     activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HVS20679.1"
                     /translation="MRPRTLKVERLGRVEYGAGLDIQKQTERAVLTGEQPDTLLLLEH
                     SHTLTLGRRAADGGVIAPDEILKARGVTVCETNRGGKVTYHGLGQIVGYPIINLSPDR
                     EDVHRFVRDLEEVLIRTMGDFDIEAFRIKGFTGVHTPRGKVAAIGVHIARWVTTHGFA
                     LNVNTDLSYFDLIVACEGESVTSMKELLGREVEMTAVEDRIIERFAKVFGMEFSHGDT
                     ETQRTETVTA"
     gene            6144..6665
                     /locus_tag="VHD88_02465"
     CDS             6144..6665
                     /locus_tag="VHD88_02465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20680.1"
                     /translation="MNRILILAIACLLILPATGLAQTRARTTRSKATQKKPVAQPAND
                     VRNEAASRVAEQIKNLTRFVYLLGGVARGIEQVDDAARRNEASPAAIDQNNKNKATVK
                     SSLQNVREGLDQLEVYFRGTPELEQYYLKLAGSASGAASAEDQAAAGHFDQAGRTMLG
                     VVNRLTDVLLVMR"
     gene            6798..7865
                     /locus_tag="VHD88_02470"
     CDS             6798..7865
                     /locus_tag="VHD88_02470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20681.1"
                     /translation="MSTNVLVSNRAMTSVLAGPQVIPHSIINDADNAFVLEVDVPRFR
                     FHNSSPIVDFIPAGTSGDAIARIEIDSGVKAVLTLTGHPMNGGDFQVEQVGLKMETTV
                     SRARADFIACSFTAMLGLAGQVRLEIPDAAFKLIANFESDLLEVSKMLERRQVAFRIM
                     MIECATGFQFDLPKELTGDEVESIALIYHAIVHRSFVWPIPSIKIFVPATAEMLAHFR
                     RLSQLNSISLGPDPQDVTLFDQRVSLGEGMVTIDDSLIDDWTRIEQELGQNDGHTVTV
                     VIRSTSHKGKYHLLNAPRLPISPWDSTVQRFVEIDDELDAYLAKGYNNLAIATLEGLD
                     ENQKVEMTTRPSLDGNAFQLS"
     gene            7883..8365
                     /locus_tag="VHD88_02475"
     CDS             7883..8365
                     /locus_tag="VHD88_02475"
                     /inference="COORDINATES: protein motif:HMM:NF013970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HVS20682.1"
                     /translation="MAITSAFSETSLVIDNDVLTHWRNGRPAILAEIGGYIRRLKRPP
                     ALASITIFEALFGIENSLAKKRISEEVALEYRNRIDALTRASIILPFDKEAATIAAHV
                     FARLSQSNRNAHWRDLFVAAIALAHKHGVATQNRRHFELISTHLPEKYSTLPLTVWNP
                     "
     gene            complement(8374..>8668)
                     /locus_tag="VHD88_02480"
     CDS             complement(8374..>8668)
                     /locus_tag="VHD88_02480"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: protein motif:HMM:NF012690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HVS20683.1"
                     /translation="GAMREGSRDRYAQEQTESESKLVPEGIEGRVPYRGTLAEMVTQL
                     VGGLRSGMGYTGCRDVKEFQEKTRFLRVTAAGLRESHVHDVVITKEAPNYRLE"
BASE COUNT         1893 a         2330 c         2433 g         2012 t
ORIGIN      
        1 cgaatctatt cgaccaggag ttgcgttgcg aagctcgtga aacgactaac atgatgcggc
       61 tactgaacga cgccggcgtc gcaatcaagt tcacgaatcc atgcgggctt tctccgcgca
      121 aaatcctcag ccgcaatcac aaaaaactga tcgtcgtgga cgattgtgtt tcgtatatcg
      181 gcggcattaa tttcagcgag cacaacgccg cgtggcacga catgatgctg cgcatcgaag
      241 gtcaggaagc tgagtttttg cgcgaggatt tcctggccac atggatcggc cgggatcgag
      301 taacacgacg agagttcgat ggcttgcagc tctacacgct tgacggccgc gagaaccgcg
      361 ctggttttca gcgagtgctg gatttgatcg atgacgcgcg tcaaacgatc tttgtcgaga
      421 gcccttacat aacttttccg ttttatgaac ggctgcgcga agcggcgcgg cacggcgtcg
      481 acgtgaagat cgtcaccccg gagcaaaaca actggagtta ctttgcgaag tacgcgcgag
      541 tggaatctgc tcggtcgcaa atcgacttgc gcctttacca gggcgggatg agccacttga
      601 aagccatgct gatcgacgac gagtttctaa tcgcgggttc gtcgaacttt gattatctga
      661 gttaccggct ctatcaggaa gtcctggcgg taataacggc gtcggaggtg atcgcggagt
      721 ttcgcgagcg tgtcatgttg cgcgacctgg ccagaagcgt cgccgtcaac tgtcacgcca
      781 gcgcggttgg gaaacactgg ctcagctttc aaacgagatt gctggatgcg gcgctgacga
      841 tcctcacgtg actgtcatca gcttgttcgc gtgcgtggta tgacgagcgt gtcagcgggc
      901 ttgattggac gtgtttgaat cccatttcca ttccgatgtc gcgccagcga tcgaattctt
      961 ccggtgtgac atagcgctcg accggaagac gtcgcgggtg cggttgcagg tactggccaa
     1021 tggtcatgac gtcacacgag acggcccgca ggtctttcat taactcaaca acttcatcga
     1081 acgtctcgcc caggccgacc atgatgccgc tctttgtaat catgccgcgc tgttcgcgat
     1141 cgcgacgctc ggcggcgcgc ttcagcaacg tcagcgactg ttgataatcg gcatcgggac
     1201 ggacgcgccg ataaagccgc gcaatcgttt cggtgttgtg attgagcacg tctggcgcgg
     1261 catccagcac ggtgttgagc gcatcttcgt cgccgttgaa gtcaggaatc agaacttcga
     1321 ctttgcattc gggattgagc gcgcgcacct ggcgaatcgt ctcggcccaa tgcgccgcgc
     1381 cgccgtcagg caaatcatcg cgattcacag aagtgattac agtgtgcgcg aggttcaagt
     1441 gcttcacagc ttcgccgacg tgacgcggct cttccgaatc aagttgaccg ggctcgcctt
     1501 tgccgacagc gcaaaatccg caatgacgcg tgcaaatgtc accgccgagc atgaacgtcg
     1561 ccgtgcgatc cgaccagcac tcaaagatgt ttggacactt cgcttcctga caaaccgtgt
     1621 gcagattcaa gccctggatc agcttgagca agtgattctg attcgtcgga tcgcccagac
     1681 gaatccgtag ccactcaggc tttggttgcc gaggtttttg attgagaact tgaagttcgc
     1741 gggccaattg gattacccca ttcggtgaaa gcattctagc atccgcctgt agaattcggc
     1801 atctaaccag cgtctcttct gcgctatact gcgcatcatt gaaacctatt cacgcaagtc
     1861 gacggcttgc gccatggagg aaactcatga aacgaaccct gattctcggt gctgttattt
     1921 gcgcgttgtt ggcaagcggc atctacgcct tcggcgatat tgctcgacca agagttacac
     1981 cgacgcctaa ggaaggcaag gtagttcttt acacgagcat gatagtgaag cccgacgcga
     2041 aggcttacga ggcgcgtttg caaatttcgc aacatacgct ccagagcatc gctcgcgaag
     2101 cggcgaacac atcgtcggac caatcgatga cgcagcgcct catgcacagc tcgacgcgaa
     2161 caatgatggc gggactgttc atgtttctgg cggtgtcctt cgcgggcgtt tggtttgctc
     2221 gatcaagcca gcgtcgcaat cagaaagcca tcgcggcggt gattatgatc gcggcggtgt
     2281 ttggtctggc gactgtgatc gtgcgcgcga acgcgggacc gccgggatac attcgctggc
     2341 aaggtctgcc gcaggctttg aaagacggca agccgaccag cggcggagtg aatatcgaaa
     2401 tcgttcctgg tgacgacagc gaaatcaagt tgatcgtgcc actgaggaat tcaaatcggc
     2461 cgggcgagga gtagtttaag aaccgcttgc gctagcgagc gggtaacttc tgcctgatgc
     2521 cggtgttccg caggcaaaga tgcctgcgct tccaggagta acgtggaacg agctgcaaac
     2581 attccactag ctgcgtggcc agccacgcgt ccgcgcgatc gagcgcgcat gtccgcgaga
     2641 ctcttcgttg tcatgctgat cgcgagcgct tgtatctcgg cggcgatggc gagctggctg
     2701 ccgcttcagt tttcgatcgt gacggtgttt cttttcgccg ggccgcacaa ctggttcgag
     2761 ctacgttact tcctgatgcg tctgccggcg cgctttggcc gctcgcgaaa cttttttgtg
     2821 gtcgcgttcg cgggcatcgg cgttctcacg ctcgcttacg tttcgatgcc agcgctttac
     2881 tacacgaatg tttggtcagg agcgaactgg ccgacggcga tcgcgagctg gaacacactc
     2941 ttgctgttgt ggctcggcac gctggtgctg ctgcgcggaa aacaaaaggt aaaccgcgat
     3001 tgcttttggg ttctgccaat ctcgtttggg ttgtgcgcat tgaactggct ggcgccggag
     3061 ttgtttagcc tggcgattgt gtatctgcat ccgctggtcg cgctctggtt tttcgatcgt
     3121 cacctgcgac gcacgcgacc tgattggctg cgaacttatc atcgttgcct ggcgttgctg
     3181 ccgttgctga tgttgggaat gttctggcag ctcgcgcgca cgccgtcgct cgcggatgac
     3241 aacggtctgg catggcgaat tactcaacac gccggcggac aactcctgcc gaacgtttcg
     3301 acgcacttgt tggtttcagt tcatgtcttt ctggagatgc tgcattacgg tgtgtggatc
     3361 gtcgcgctgc cgctcatcgg cgcaacgggc gccgtctgga gtgtgaagac gattccgctg
     3421 gctcgccgtc gcggcggctt tccaaaattg atcgctgcgg ttcttgtctt tggcttattc
     3481 gtggtcgcgt tgctgtggtt tggattttca gttaactatg cggccatgcg cgatgtttat
     3541 ttcgcggtgg cgatagcgca cgtactggcc gaggcgccgt tcttattgag gatgatctga
     3601 atgttacggt ttgcggcttc gccgtctgat gtgcggaaag gctgtgcctt tccgtaatct
     3661 ggattcgaag aacgtgagag gctacgcctc gaacgggagg cagagtctcc aggatctaat
     3721 tagaaacttg gccggtaagg cgaagcctta ccgcacatca ggcggcagag ccgcgaaaaa
     3781 ctgcaagctc tcaacatgtc cccgcacgat ctctggcact tctttccact tggctatctg
     3841 ttttcgatct tgatcgagac accggttttg gtaatcggtt tgtcgaagcg gcattcgctc
     3901 aaacgcaaac tgttcgcggg cgtgtggctg acagcgtgca cttatccgat tgtcgtgctg
     3961 gttctgccga tgctcttcgt caaccgttcg aggattcttt acttgatcgt ggcggaagtt
     4021 tttgcgccgg ttgccgaatg cgttttgttc tggctggcat tcggtagcga agaggaagta
     4081 ggcaaaggtt caatgtggcg tgatttcatc gccatcgtcg ccgcgaacct cgggtcattc
     4141 gcgggtggtg aaggcttgaa cgcttacggc tggtttgggt tatttggttg agtcagtccc
     4201 atcttgtgct gaagacaagc cctgaatggg gatgctccga ctagctcgct tgcggtacca
     4261 caaaaacact accagagcga tgaccagtaa ggcaatgaaa gcaagaatga atatgattac
     4321 tgcgatgaat gctccaatgc tgaccggatc gggagcaaca tcaaacaaca gcaaggcaag
     4381 tcattgcccc tctccttggc ccaacagccg cgacaaaaca tccggatcga tgttaccgcc
     4441 ggagagcact accccaacac gtttgaaatc ggcaggaact tttcgcgcca gcaccgcggc
     4501 ggcggcggcg gcgccggaag gctcgaccag cagcttcata cgaaaaagca tgaacttcat
     4561 ggccgcgaca atttcatcgt cagaaacagt gaacacgtct tccgcaacag tttgcaggat
     4621 gggaaacgtc agggcgcccg gagtctgcac gcgcaagcca tcggcaatcg tcggcggagg
     4681 cggaatcgag acgcgctcgc ctttgcgaaa cgattgctgc gtgtcgctcg cggtttccgg
     4741 ctcaacggcg aagcacttga tcgatggatt gatcgatttt gcggccgtgc tgacccccac
     4801 aaacaatcca ccgccgctgc atggcgtcaa gatgcaatcg agattcggga cttcttcaag
     4861 aaattccaaa ccgcaagtgc cctgtccggc catcacgaga taatcgtcgt aaggcggcac
     4921 catcgtgagc ccttcgcttt cggctatatc gcgcccaaac ttttcgcggt catcgtgctg
     4981 acgatcgaag aagcgaatgt ccgcgccgta ttcgcgcgtc gccgcgactt tcattttcgg
     5041 cgcgtcggca ggaatcgcga cgacggcgcg aacaccggcc tcgcgcgcag ccaacgccac
     5101 agcctgcgca tgattgccgg acgaaaccgc gatcactccg cgccgttttt cgtcgtcagt
     5161 caacgaaaga attctgttgg tcgcgccgcg cgccttgaac gcgcccgcgc gttgcaggtt
     5221 ttcgcacttg aagacgactt cgcagccggc gacttcgttg aatgagtgcg aagtgacgac
     5281 cggcgtgcga tgaatgcgtc ccgcgatccg cgcggcggct tctttgatga gttcgagtgt
     5341 cagcataggt tttgccacag aggcacggag gcacagagca aaccttttaa gatcaagccg
     5401 taaccgtttc cgttctctgt gtctctgtgt ctccgtggct gaattccatt ccgaagactt
     5461 tcgcgaagcg ctcgatgatg cgatcttcga ctgccgtcat ttcaacctcg cggccgagca
     5521 actccttcat cgaagtcacc gattcacctt cacaagcgac aatcaaatca aagtaactca
     5581 gatcggtatt cacgttcaaa gcaaaaccgt gcgtcgtgac ccagcgcgcg atgtgcacac
     5641 caatggccgc gactttgccg cgcggcgtgt gcacgccggt gaagcctttg atgcgaaacg
     5701 cttcaatgtc aaagtcgccc atcgtccgaa tcagaacttc ttccagatcg cgcacgaagc
     5761 gatgcacgtc ttcgcgatcg ggactcagat tgatgattgg ataacccaca atctggccca
     5821 gaccgtgata cgtcaccttg ccgccacgat tcgtttcaca aacggtaacg ccacgtgctt
     5881 tcaaaatttc atccggagca atgaccccgc catcggccgc gcgccgcccg agcgtgagcg
     5941 tgtgcgaatg ctcgagcaga agcaacgtat ccggttgttc gcccgtcaaa acggcgcgct
     6001 cagtttgctt ttgaatgtcg agccccgcgc cgtattcgac gcggcccagc cgttcgactt
     6061 ttagagttcg cggtcgcatg gttgccagag tagaatcagg attgtaccag catgacatta
     6121 aagacgacga ccggaggatt ccaatgaatc gcattttgat cttagctatc gcttgtttat
     6181 taattctgcc ggcaacaggg ctggcgcaga cgcgcgcgcg caccacccgt tcgaaagcga
     6241 cgcaaaagaa accagtggcg caaccggcca acgatgtgcg caacgaagcc gcctcgcgcg
     6301 tcgccgaaca aatcaaaaac ctgaccaggt tcgtttatct gctgggcgga gtcgcaagag
     6361 ggatcgagca agtcgatgat gccgcgcgac gcaacgaagc ttcgccggcg gcaatcgatc
     6421 aaaacaacaa gaacaaagca accgtgaaat caagcttgca gaacgtgcgc gaaggcctgg
     6481 atcaactcga agtgtatttt aggggaacgc cggaactcga acagtattat ttgaagctgg
     6541 caggttcagc ttcgggcgcg gcaagtgccg aagatcaagc cgcggcgggc catttcgatc
     6601 aagcgggcag aacgatgctg ggagtggtga atcgtttgac tgatgtgctg ctggtgatgc
     6661 gatgatgggc aaacgatcct gacaagcctt tcgacagcgg tcgcagtgag tacttttcgt
     6721 aaatcgaaag aaggaatcaa tcaagagacg gggtgaatgt tgataaccat gttggttcaa
     6781 gagcataatc tgtgctaatg agcacgaacg tcctcgtcag caaccgcgcg atgacctctg
     6841 ttttggcagg gccgcaggtc attccccatt cgataatcaa cgatgccgat aatgcattcg
     6901 tgctggaagt tgatgtccct cgatttcggt tccacaattc gtctccaatt gtcgacttca
     6961 tccctgcggg cacatccggc gacgcaatcg cccgaataga aatcgactca ggtgtcaaag
     7021 ccgtattgac attgacgggc catccaatga atgggggaga ctttcaggtt gaacaggtgg
     7081 gtttgaaaat ggaaacaacc gtcagccgag cccgtgccga ctttattgct tgtagcttca
     7141 ccgcgatgct gggtctagca gggcaggtaa gactagaaat acctgacgct gcatttaaat
     7201 tgatcgccaa ttttgagtcg gaccttctag aggttagcaa gatgctagaa cggaggcagg
     7261 tggcttttcg aatcatgatg atcgagtgtg ctacgggctt tcaattcgat ctaccgaagg
     7321 agctgacggg cgatgaagtg gagagcatcg cgctcatcta tcacgcgatt gttcatcgtt
     7381 catttgtttg gccgatacct tcgattaaga tttttgtgcc agcaacagca gaaatgcttg
     7441 cccatttcag gaggcttagc cagcttaatt caatatctct tgggcccgat cctcaggatg
     7501 tgaccttatt cgatcagcgg gtatccttag gggaagggat ggttacgatt gacgactcct
     7561 tgattgatga ctggactagg attgaacaag aattgggtca gaacgatgga cacacggtaa
     7621 ccgtagtgat tcgctcgaca agccataaag gcaagtatca cctgctaaac gcaccgagac
     7681 taccgatttc accttgggat tccacagttc agagatttgt cgaaatagat gacgagttag
     7741 atgcctatct agctaagggt tataacaatc tcgcgattgc aacgctcgaa ggtttggatg
     7801 agaatcagaa ggtcgaaatg acaacccgac caagcttgga tgggaatgct ttccagttaa
     7861 gctagccgac gaagcccccg cgatggcgat tacctcagcg ttttctgaaa cgtcactcgt
     7921 tattgacaac gatgttctga cccattggag gaatggtcga ccagccatct tagctgagat
     7981 cggtggttat attaggcggc tcaagcgacc gcccgctctg gcttcaataa ccatttttga
     8041 agcgttgttt gggatcgaga acagcttggc caagaaaagg atttccgaag aagtcgcttt
     8101 ggagtatcga aatcgtattg atgctttaac ccgagctagc ataatacttc ctttcgacaa
     8161 ggaagcagcg acaatagctg ctcacgtttt cgcgcgcctt tcccagagta atcgcaatgc
     8221 gcattggcgt gatttgtttg tcgcagcaat agccttggca cataagcatg gtgtcgccac
     8281 tcaaaacagg aggcatttcg aattgatctc gacgcacttg cctgagaaat attcgacttt
     8341 gcctctcacg gtttggaacc catgaccctc catctattcc agccggtagt tcggcgcttc
     8401 cttcgtgatt acaacgtcgt gcacgtgtga ctcgcgcaag cctgccgcgg taactcgtaa
     8461 aaagcgcgtc ttctcctgaa actctttgac gtcgcgacaa ccggtgtagc ccattcccga
     8521 tcgcagcccg ccgacaagtt gcgtcaccat ctcagccagc gtgccgcgat aaggcacgcg
     8581 gccttcgatc ccttcgggca ctagtttcga ttcgctttca gtttgttcct gcgcgtaacg
     8641 atcgcgcgag ccttcgcgca tcgcgccg
//
LOCUS       DASZZE010000124         1559 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_263747, whole genome shotgun sequence.
ACCESSION   DASZZE010000124 DASZZE010000000
VERSION     DASZZE010000124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1559
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_263747"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(311..>1559)
                     /locus_tag="VHD88_02485"
     CDS             complement(311..>1559)
                     /locus_tag="VHD88_02485"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HVS20684.1"
                     /translation="QAAMEASATARRDDAKIFLREFTRELVREINPSTKIITFAILIL
                     ALLGALYIGYAQFNEARRARRIADQQAQLIAAQREQLQHANEQLGNLVTSNQQMLKTL
                     SLGELLRADYGGGVCLISGSYMFVEAGTGRPLRYPETQANESGGTVQNGTESPVLTPE
                     GHGAIAEYEFVGTGFHVGNGFVVTNRHVVQPWQADARAQTLNSSVKGQPRLKKLMAFF
                     PGSTQPIALKFKQAGQREDVAVCTIDVKDLPPKVPVLPLEKDSDSVAIGKLVVTMGYP
                     SGVDRLLALLDETEARQIQARYGSVESQLSILAQNKHITPLTTQGNITDLDASKIVYD
                     ARTGEGGSGGPLFGPSGRVIGITNAIFTENTASNFAVPIRHAIDLLGRAGWTAPASLE
                     PEQKDGANISQTNTRATQTSEPR"
BASE COUNT          318 a          458 c          433 g          350 t
ORIGIN      
        1 gtatcggtcg cttcaatcag cgcgtgatcg tcgaaatgtt tctcggtgat caaaatctaa
       61 attacctgcg tctaagttta gcgcatcatc tacaaagcaa acccgaaaga caaatctatt
      121 gcaccggagc gttcccacat ctccatgtgt tgagaaacgc tccaggaggt gcgagtttgc
      181 ggcggcgtcg ccaaccaccg cgcggtgagg agagacgcca agagccgctt cctgagcggc
      241 tttcagtagg gactcgttcg catcatcaag caagaccgct actgagcaac gaacgtgcca
      301 agcctctcat tcagcgcggt tcgctggttt gcgtcgcccg cgtattggtc tgactgatat
      361 tcgcgccgtc tttctgctca ggctccaggc tcgcaggagc ggtccatcct gctcgtccaa
      421 gcaagtcgat cgcatgccga ataggcacgg caaaatttga agcagtattc tccgtaaaga
      481 tggcgttagt gattccaatt acgcggcccg acgggccgaa tagcggcccg cccgatccgc
      541 cttcgcccgt gcgggcgtcg tagacaatct tgctcgcatc cagatcggta atgttaccct
      601 gcgtcgtgag cggagtaatg tgtttgtttt gagcgagaat gctaagctgc gattccaccg
      661 agccatagcg agcctgaatc tggcgcgcct cggtttcgtc aagcaaagcc agcaatcgat
      721 ccactcccga cggataaccc atcgtcacta cgagttttcc aatcgcgact gaatcagaat
      781 ctttttccag cggcaagact ggaaccttcg gcggcaggtc cttcacatca atcgtgcaaa
      841 ccgccacgtc ttcgcgctgc cccgcttgtt tgaatttcaa agcgatcggc tgtgtgctcc
      901 cgggaaagaa agccatcaac tttttcagac gtggttgacc cttcacgctg ctgttcaagg
      961 tttgcgcgcg cgcgtccgcc tgccacggtt ggaccacgtg gcggttcgtg actacgaagc
     1021 cattgccgac atgaaaaccc gtgcctacga attcatattc ggcgattgcg ccgtgacctt
     1081 cgggagtcag caccggagac tcagtgccgt tttgcaccgt tcccccggac tcgtttgcct
     1141 gcgtctcggg atagcgcaga gggcgtccgg tccctgcttc gacaaacatg tacgaaccgg
     1201 aaattaaaca aacgccgccc ccatagtcgg cgcgcagtaa ctcgcccagc gacagagtct
     1261 tgagcatttg ttgattcgag gtgacgaggt tgcccagttg ctcgttggcg tgttgcagtt
     1321 gctcgcgctg agcggcgatt agttgcgctt gctgatcggc gatgcgccga gctcgccgcg
     1381 cctcattgaa ctgcgcgtag ccgatgtaga gcgcgcccag cagggccaga atcagaatcg
     1441 cgaaggtgat gatctttgtg ctgggattga tctcgcggac cagttcgcgc gtgaactcgc
     1501 gcagaaatat tttggcatcg tcgcggcgcg ccgtcgccga agcttccatc gcggcctgc
//
LOCUS       DASZZE010000125         2777 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_296099, whole genome shotgun sequence.
ACCESSION   DASZZE010000125 DASZZE010000000
VERSION     DASZZE010000125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2777)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2777)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2777
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_296099"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..280
                     /locus_tag="VHD88_02490"
     CDS             <1..280
                     /locus_tag="VHD88_02490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20685.1"
                     /translation="KPLYVFGWAGLLTFAVSALCGLFAFLMKYADWPHHADFIQTPLP
                     VLAMVMIVLGVQFFLMGLLAEMLVRTYHESQAKPIYAVRERIGFEEQR"
     gene            362..2296
                     /gene="asnB"
                     /locus_tag="VHD88_02495"
     CDS             362..2296
                     /gene="asnB"
                     /locus_tag="VHD88_02495"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HVS20686.1"
                     /translation="MCGITGWANLNPRTPPPDGADELLRSMCDRMVHRGPDSEGYLVS
                     DGVALGMRRLAIIDLITGEQPVFNEDESIAVILNGEIYNYRELRADLEARGHSFRSAS
                     DTETLPHLYEEYGREMVQHLNGMFAFALWDEKRRRLFIARDRFGEKPLYWGVFDHTLL
                     FASEPKVLLAHPSVRPDLNLNALRQYLSFDYVPAPLSIYEGISKLPAAHTLTLEDGEI
                     KVERYWKLSYKTHEPVPSVDNAANQLRDLLADSVRMRMVSDVPLGVLLSGGIDSSVVT
                     ALAVRASSETVKTFSISFAESSFDESQYARRVAKFLNTDHHEERFSASLAANLVADIG
                     AWMDEPMSDPSLVPTYLLSRFTRKHVTVALGGDGGDEIFAGYPMYFGHRMARAYDRVP
                     RFLKRGVVEPMVNLLPVKTKNLSLDYRARRFLTASHYDEVARHHVWFGSFTPHDQESL
                     LTNHAKQSSEGDVYRDARRMFAECDSNDLTECMQHLDTQLYLAEDILTKVDRASMAVS
                     LEVRAPYLDPRVAEFAASLPSRYKLHGYTSKYILKRAAKGLVPPFVWRRGKKGFGVPF
                     AKWLKSELRPLARDLLSPERLRRGGLFNPDYVARLQDEHERGVANHRKLLWSLLTFEL
                     WRESFVETPRRIETSVTARQ"
     gene            2463..>2777
                     /locus_tag="VHD88_02500"
     CDS             2463..>2777
                     /locus_tag="VHD88_02500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20687.1"
                     /translation="MIQDEIQSAHKSLWQWCRAHDFAGYDPYDGLNSRLFQATPLKHS
                     RFARLAWTQIFKKSPVNLRRLALVPPQRNPKGTALFALAALADYRRLQTVETETDARA
                     LVD"
BASE COUNT          554 a          782 c          790 g          651 t
ORIGIN      
        1 caagccgctt tatgtattcg gttgggccgg cttgttgacg tttgcggttt ccgcgctctg
       61 tgggttgttc gcattcctga tgaagtacgc ggactggccg catcacgcgg actttattca
      121 aacgccattg ccggtgctgg cgatggtgat gatcgttctg ggcgtccagt ttttcttaat
      181 gggtcttttg gcagagatgc tggtgcgtac ttaccacgaa tcacaggcga agccgatcta
      241 tgcggtgcgg gagagaattg gatttgaaga gcaacgatga atcatgaacg ctgaacgatg
      301 aactgaagac gcattttgct tttattcatc cttcatagtt catccttcac ccttttcatt
      361 tatgtgcggc ataaccggtt gggccaatct taatcctcgc acgccgccac ccgacggcgc
      421 ggatgaactc ctgcgctcga tgtgtgaccg catggttcat cgtggtcctg attcggaagg
      481 ctatctcgta agcgatggcg tcgcgctggg tatgcggcgg ctggcaatca tcgatctgat
      541 cacgggcgag cagcctgttt tcaacgaaga cgaaagcatc gccgtaattc tcaacggcga
      601 gatttacaac tatcgcgaac tgcgcgctga tttagaggcg cgcggtcatt ctttccgcag
      661 cgcttccgac accgaaaccc tgccgcatct ctacgaagaa tatggacgcg agatggtcca
      721 acatctcaac ggcatgttcg cgttcgcctt atgggatgaa aaacgtcggc gattgttcat
      781 cgcgcgtgat cgctttggcg agaagccgtt gtactggggc gtcttcgatc acactttgtt
      841 gtttgcgtca gagccgaagg ttttgctggc gcatccatcg gtgcggcccg atctgaatct
      901 caacgcgctg cggcaatatc tttcgttcga ttacgtgccc gcgccgcttt cgatctatga
      961 aggcatcagc aaacttcccg ccgcgcacac gctcacgctc gaggatggcg aaataaaagt
     1021 cgagcgttac tggaaactta gctacaaaac ccacgagccc gtgccgtcgg tcgataacgc
     1081 cgctaatcaa ctgcgagatc ttctggccga ctcggtgcgc atgcgtatgg tgtcggacgt
     1141 gccactggga gttttgcttt ccggcggcat cgactcttcg gtggtcaccg ccctggccgt
     1201 gcgcgcatcg tcagaaacgg tgaagacctt ttcgatctcg tttgctgaaa gttcgtttga
     1261 cgaatcgcag tatgcgcggc gcgtggcgaa gttcctgaac accgatcacc acgaagagcg
     1321 cttcagcgcc agcctcgccg cgaacctggt tgccgacatc ggcgcatgga tggacgagcc
     1381 tatgagcgat ccgtccctgg ttccgactta cctgctatcg cggttcacgc gcaagcacgt
     1441 caccgtcgcg cttggcggcg acggcggtga tgaaatcttt gccggctatc cgatgtattt
     1501 tggccaccgg atggcgcggg cttacgatcg tgtgcctcga tttctcaagc gcggcgtggt
     1561 cgagccgatg gtcaatctct tgccggtaaa gacaaagaat ctttcgttgg attaccgggc
     1621 gcggcggttc ctgaccgctt cgcattacga tgaagtcgct cggcatcatg tctggttcgg
     1681 ctcgtttacg ccgcacgatc aggaatcgct gttgactaac cacgcaaagc agtcgagcga
     1741 aggcgacgtt tatcgcgacg cacgtcgcat gtttgccgaa tgcgactcga atgatctcac
     1801 cgagtgcatg cagcatctcg acacccaact ctatctcgcg gaagacatcc tgacgaaggt
     1861 cgatcgcgcg agcatggccg tcagtttgga agtgcgcgcg ccttatctcg atccgcgcgt
     1921 ggccgaattt gccgcatcgc tgccatcgcg ctacaagctt catggctata cttcaaaata
     1981 catcctgaag cgcgccgcga aaggcctggt acctccattc gtctggcgtc ggggcaagaa
     2041 aggtttcgga gtgccttttg ccaaatggtt gaagagcgaa ctgcgcccgc tggcgcgcga
     2101 tctcttgtcg ccagaacgtc tgcgccgcgg cggcttgttc aatcctgatt acgtggcgcg
     2161 cttacaagac gagcacgagc gcggcgtcgc gaatcatcga aagctgctgt ggagtttgct
     2221 gacgttcgag ctgtggcgcg agagctttgt tgagacgccg cggcggattg aaacgtcggt
     2281 aaccgcgcgg cagtgatttg gagtatatag ctcaacttca aacaactctc aggttgggaa
     2341 gggggctcgc ccccgctgat cctgattgag gaaatggcga atgcgggggc aagcccccct
     2401 tcctgatctg caattgttcc gagatctgca ttgctattct gcaccgctcg accgcggatc
     2461 caatgatcca ggatgaaatt caaagcgcgc acaaaagcct ctggcaatgg tgccgcgcgc
     2521 atgacttcgc cggttacgat ccttacgacg gcctgaacag ccggctcttt caagccacgc
     2581 ctctgaagca ttcgcgattc gctcgcctcg cctggacgca aattttcaag aaatcgcctg
     2641 tcaacttgcg ccgtttagcg ttggttcctc cgcagcgaaa tcccaaaggc acggcgctgt
     2701 tcgcgctcgc cgcgctggca gattatcggc gcttgcaaac tgtcgaaaca gagacagacg
     2761 cgcgtgcttt agtcgac
//
LOCUS       DASZZE010000126         1712 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_37472, whole genome shotgun sequence.
ACCESSION   DASZZE010000126 DASZZE010000000
VERSION     DASZZE010000126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1712)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1712)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1712
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37472"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..814)
                     /locus_tag="VHD88_02505"
     CDS             complement(<1..814)
                     /locus_tag="VHD88_02505"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HVS20688.1"
                     /translation="MRAIVTTRNGDVSVLRVEDRPDPKPDTDQVVIRVRAAGLNFADI
                     LARQGLYPDGPKKPCVMGYEISGVVEALGEGANRDLMGKSVVAMTRFGGQSELVAVKA
                     KQLFEKPAQLTFEQTAAIPVNYLTAYVLLFVMGSLHEEESVLIHNAGGGVGLAAIDIA
                     KRIGATTYGTASPSKHDFLRQRGLDHPIDYRNQDWFPVLMELTNGRGVELVIDPLGGA
                     HWKKSYRALRHTGRLGMFGVSTASANGLAGKVKLLKAALQTPRFHPFAMFNKN"
     gene            complement(913..1575)
                     /locus_tag="VHD88_02510"
     CDS             complement(913..1575)
                     /locus_tag="VHD88_02510"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HVS20689.1"
                     /translation="MALRLGDIAPDFTAETTEGPISFHEWIGDKWACLFSHPKDFTPV
                     CTTELGEASRLKPEFEKRNVKVIGLSVDQADSHKRWAEDIRETQGTALNFPVIADPDH
                     KVAELYDMIHPEVSDVFTVRSVFIVGPDKKVKLMITYPASTGRNFDEILRVIDSIQLT
                     AGYSVATPVNWKDGDDVIIVPSLSDDDARKKFPGGWKTLKPYLRVVPQPNKPQTKAAD
                     QS"
BASE COUNT          371 a          504 c          447 g          390 t
ORIGIN      
        1 ggttcttatt gaacatcgcg aatggatgaa agcgcggcgt ctgcaaagca gccttgagca
       61 acttcacttt tcctgccagt ccgtttgccg acgcagtcga gacgccaaac attcccagac
      121 gcccggtgtg ccgcagcgct cgatagcttt tcttccaatg agcaccgccg agcggatcga
      181 tcacaagctc gactccgcgg ccgttcgtca gttccatcaa aacgggaaac caatcctgat
      241 tgcgatagtc gatcggatga tctaacccgc gttgtctcag gaagtcatgc ttcgaaggac
      301 tcgcggttcc ataggtcgtg gcgccaatcc tcttcgctat gtcgatcgct gccaggccta
      361 cgccgccacc cgcgttgtga atcaagaccg actcttcttc atgcaaagaa cccatcacaa
      421 acagcagcac gtacgccgtg agatagttaa ccggaatcgc ggcggtttgt tcgaacgtaa
      481 gttgcgctgg cttctcgaac aactgcttgg ccttgacagc gacgagttcc gactgcccgc
      541 caaagcgcgt catcgccacg acggattttc ccattagatc gcgattcgcg ccttcaccga
      601 gcgcttcaac gacacctgaa atctcatagc ccatcacgca cggcttcttt ggcccgtcag
      661 gataaaggcc ctgccgcgcc aggatatcgg cgaagttcag cccggcagcg cgaacccgaa
      721 tcacaacctg atccgtgtcg ggctttggat cgggacgatc ttcgacgcgc aaaacgctca
      781 cgtcaccgtt gcgggtggtt acgattgctc gcataagaaa agaacattca gcatgtgcag
      841 ataatgcgaa gggcacggca tgaccgtgcc ctcggcgaac tgcatacggt cgagctaagg
      901 cctcgaacgc gctcagcttt ggtccgccgc cttcgtttgt ggcttgttcg gttgcggcac
      961 gacgcgcagg taaggcttca gagtcttcca accgccggga aacttcttcc tggcgtcatc
     1021 atcgctgagc gaaggcacga tgatcacgtc gtcgccgtct ttccaattga ccggcgtcgc
     1081 gacgctgtaa ccggcagtca gttgtatcga atcgatcacg cgcagaatct cgtcaaagtt
     1141 tcttcccgtg ctcgccggat aagtgatcat cagtttcact ttcttgtccg ggccgacgat
     1201 gaacactgag cgcaccgtga agacgtcgct aacctcggga tggatcatgt cgtaaagctc
     1261 tgcgactttg tgatccggat cggcgatcac cggaaagttg agcgccgttc cctgcgtctc
     1321 gcgaatgtct tcggcccagc gtttgtgcga gtcagcctga tcgacgctca ggccgatcac
     1381 tttgacgttg cgcttttcga attcgggttt gagccgcgaa gcttcgccca gctcggtcgt
     1441 gcacaccggc gtaaaatcct tcgggtgcga aaacagacac gcccacttgt cgccaatcca
     1501 ttcatgaaaa ctaatcggac cttcggtagt ttcggccgtg aaatccggcg caatgtcacc
     1561 taaacgtaat gccatgttgg gtaccccttt tccttccaaa gtcacttcga ccccgtggtg
     1621 gcgaggtcaa gtcgacataa actgatttgt ttttgctaac tgagcgactt ttataactaa
     1681 acctgaggca agtcaaggta agaagggtta tg
//
LOCUS       DASZZE010000127         4701 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_296146, whole genome shotgun sequence.
ACCESSION   DASZZE010000127 DASZZE010000000
VERSION     DASZZE010000127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4701)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4701)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4701
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_296146"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1562
                     /locus_tag="VHD88_02515"
     CDS             <1..1562
                     /locus_tag="VHD88_02515"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HVS20690.1"
                     /translation="PLRARIGENARCFALAEHNVASRAADYLTFLREVIDNRPRRKLM
                     AEVSHELVGLGVGPTDDHFLRGVATDFATILPGKNFRLNASSSQSAKASNSRAISPNG
                     NGSLNASSSPPTNGRMPKVEGFDFKRAAIEYPRKLDAERRHYLLTKPFYNLANKPPKH
                     SADGMDAETFRHFCDFANIAVALGLPAGSRILDVGCGSGWLSEYFARLGYVVKGIDIS
                     AELIEMSRQRIAKVAFDVDHETPLRCTFEVHDIEQSALNEKFDAIVCYDSLHHFENEH
                     AVMRHLAEMLPIGGLLFILEGDRPATGSPTEVELTGVMREFGTLESPFDYDYLRELLN
                     QHGFAVVGDYVSVNGLFEREMLEDDRLPLATLPTNYYYLTCKKVAEGAPASIVPDSRR
                     PGLLRARIALREPVRECLEPGQKLLLDLEIQNIGDTLWLASRHPRAGVVMPAVRVFDE
                     AGTLVDEFHGQPALPRAVAPGETVRLKIEYAAPQRGGQYTLKLDLVDQHVCWFEEKGS
                     EPLTVRFEVIL"
     gene            1562..2182
                     /locus_tag="VHD88_02520"
     CDS             1562..2182
                     /locus_tag="VHD88_02520"
                     /inference="COORDINATES: protein motif:HMM:NF019615.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1698 domain-containing protein"
                     /protein_id="HVS20691.1"
                     /translation="MTRENILSELQRLEPWFQCIDLGGGVSTKTKSAIGEPVEYPRPT
                     WEKVKTCLPENLSGKSVLDVGCNAGFYCIEAKRRGAARVLGVDSQRDLIRQAVFVREV
                     LKLDIEYQRMSVYDLDPFVIGQFDITLALGLIYHCKHLVLALEKLFTVTRELLILETA
                     IYPPEKSPGSFAYDVGGIEATLHPLAYIENRPDAKEAIYNWFLPGV"
     gene            2231..2686
                     /locus_tag="VHD88_02525"
     CDS             2231..2686
                     /locus_tag="VHD88_02525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20692.1"
                     /translation="MPGVQSDRAVLACHKREPYPDSRMVAYLAAKLSLLSGASRCRAN
                     EVLRFSIRAENTGHARWLRGDDRGTEKGSVHLVAHLLGKDGEPIALYHAGAFLTHDVA
                     PGEAVEIEITLKAPDSPGDCLLEFDMVSEHLAWFEDLGSEVLKHNLIVE"
     gene            2993..>4701
                     /locus_tag="VHD88_02530"
     CDS             2993..>4701
                     /locus_tag="VHD88_02530"
                     /inference="COORDINATES: protein motif:HMM:NF025314.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4214 domain-containing protein"
                     /protein_id="HVS20693.1"
                     /translation="MKRVRRFPQRLVRWTSLGVGFALVFSCLVTVPLQSASGKDNRVR
                     TPTRRGSDRLAQGQSALPNGKGQKVNALPPQPGPPEATVPNLDEARRKRQPLPEAPLH
                     IPSSVRSRRNPLVPRNGLKVGDPLPLGLQGATNQPANSNAASQPPHLNAKDAKYSAKG
                     AKSFPLRSSANSFAASALKSLSSLSQPQKGTSARSKRSELNHGRANARAAAPAPTGDD
                     QFVQSFVFGAFVRYPTSGEQQYWDDVLRKAYTYGHGSMMIAARELGKTLFESAEYAAR
                     NRSNHDYVSDLYYTYLARPPDAGGWAFWEGQCNAYGREQVRRAFDECGEFAYDVAAVT
                     PNGSASSAASSLLSARVDPNNQGGDQLLARDAEWGVGLLSLPGRSGLDLGLGLSYSSA
                     AVWTHSGPYIYFDEDNGTPSPGFRLGFPTVQELSFDAQVGVNVYLLITPSGQRVELRK
                     VGTSNVYEAADSSYLQLTDNSGSNPSTLLVRATDGTQMSYTKLQDEWRCTQIKDRNGN
                     YLTVNYVWAGQIANITDTLGRVITFNYDGNSNLISITQPWNGATHTWATFGWTSISVS
                     PGFS"
BASE COUNT         1003 a         1321 c         1347 g         1030 t
ORIGIN      
        1 agccgctccg cgcacgcatc ggcgaaaacg ctcgatgctt tgctttggcc gaacacaacg
       61 tcgcaagccg cgctgccgat tacctgactt ttcttcgtga agtgattgac aatcggccac
      121 gtcgaaaact gatggccgaa gtttcgcacg aacttgtcgg tctgggagtc ggcccaacag
      181 acgatcactt cctgcgcgga gtggcgacgg atttcgcaac aattctgccc ggcaagaact
      241 tcaggcttaa cgcctcatca tcgcaaagcg cgaaggcaag taactcaaga gcgatttcgc
      301 ccaacggaaa cggatcgctg aacgcttcgt catcaccgcc aacgaacggt cgcatgccga
      361 aagttgaagg ctttgatttc aagcgcgcgg cgatcgaata cccgcgcaag ctggacgccg
      421 agcgccggca ctatctgttg acaaagcctt tctacaatct tgccaataaa ccaccgaagc
      481 acagcgctga cggcatggac gccgaaacgt tccgccactt ttgcgatttc gcaaacatcg
      541 cggtcgcgct gggtctgccc gccggaagtc gaatcctgga cgtcggctgt ggctcaggct
      601 ggctgagcga atactttgcg cggctcggat acgttgtcaa agggattgac atcagcgccg
      661 aactcatcga gatgtcgcgc caacgcatcg cgaaagttgc gttcgacgtg gatcacgaaa
      721 cgcctttgcg ttgcactttc gaggtccatg atatcgagca gtcagcgctc aacgaaaagt
      781 tcgacgcgat cgtctgctac gattcgctgc atcacttcga aaacgaacac gcggtgatgc
      841 gccacctcgc cgaaatgctt ccaattggcg gcttgctttt cattctggaa ggtgaccggc
      901 cggcgacggg ttcgcccact gaagtagagc ttactggcgt catgcgcgag tttgggacac
      961 ttgaatcgcc attcgactac gattatctac gcgagcttct taaccaacat ggcttcgcgg
     1021 tcgtcggaga ttatgtaagc gtcaacggac tgttcgagcg agagatgctt gaagacgatc
     1081 gcttgccgct cgcgacgctg ccgacgaatt actattacct cacctgcaag aaagttgctg
     1141 aaggcgcgcc ggcctcgatt gtgcctgaca gccggcgacc gggtctgctg cgcgctcgga
     1201 tcgctttgag agaaccagtg cgagaatgtc tagaacccgg gcagaagctc ttgctcgatc
     1261 tggagatcca aaatattggc gacacgcttt ggcttgcgag tcgccacccg cgcgcaggag
     1321 tagtgatgcc ggcggtgcga gtctttgatg aagccggcac gctcgtcgat gagttccatg
     1381 gccagccggc gttgccgcgc gcggttgccc ccggcgaaac ggtgcgactg aagattgaat
     1441 acgctgcgcc tcagcgcggc ggtcaataca cgctcaagct cgatctggtt gaccaacacg
     1501 tttgctggtt tgaagagaaa ggttctgagc cgctcacggt ccgcttcgaa gtgatcctct
     1561 gatgacgcgc gaaaatattc tgtctgaatt gcagagactc gagccctggt ttcagtgtat
     1621 cgacctcggc ggaggagtct ccaccaagac caagagcgcg atcggcgagc ctgtggaata
     1681 cccgcgtccc acttgggaaa aggtgaagac ctgcctgccc gagaatcttt ccggcaagag
     1741 tgtgctcgac gttggctgca atgccggttt ctattgcata gaagctaaac gacgtggcgc
     1801 cgcgcgcgta ctcggcgttg actcgcagcg cgatctgatt cgtcaagccg tctttgtgcg
     1861 agaggttttg aaactcgaca tcgaatatca acggatgtct gtttacgatc tcgatccgtt
     1921 cgtgatcggg caattcgata tcacgcttgc gctcggtttg atttaccact gcaagcattt
     1981 ggtgctggcg ctggaaaaac ttttcacagt cacgcgcgaa cttctcatat tagaaactgc
     2041 gatctatccg ccggaaaaat ctccgggctc ttttgcttac gacgttggcg gaatcgaagc
     2101 cacgcttcat ccgctcgcgt acatcgaaaa tcggcccgat gcgaaagaag cgatctacaa
     2161 ctggtttctt ccgggagtct aggcgctctg cgcgctgctc aagaacgtcg gattcgatga
     2221 tgttgaagtg ttgcccggtg tgcagagcga ccgcgcggtg ctcgcatgtc acaagcgcga
     2281 accgtatccc gacagccgca tggtcgctta tctcgcggcg aagctctcgc tcttatccgg
     2341 cgcatcgcgt tgtcgcgcaa atgaagtttt gcgattctcc attcgcgctg agaatactgg
     2401 gcacgcacgc tggctacgcg gtgacgaccg cgggactgag aaaggttcag tgcatctcgt
     2461 ggcgcacttg ctgggtaaag atggtgagcc gatcgcgttg tatcacgcag gagcttttct
     2521 cactcatgac gttgcacccg gtgaggctgt cgagatcgag atcactttga aagcgcctga
     2581 ctcccccggc gattgcctac ttgagttcga tatggtctca gagcatctgg cgtggtttga
     2641 agatctggga tccgaagttc tcaaacacaa cctgattgtt gagtagcgtg aggtgaacgg
     2701 gcgcaactgc cgtgtccagg gacgcaactt caaaatcacg aggtacaccg gtgaaagtga
     2761 cggcttaacc ttgtcaggcc cgtagggtct ggaacctaca actccaacgc aacccttcta
     2821 gctcgcgggt tgtcactcct taagacgaaa ccttagttgc ggggcggctc agcaattttt
     2881 cgttcaagag agatgcagct aaatagaatc attgactctc acgggcaacg ggtctatctt
     2941 gcggctgaca atcccccaat tgttaccaac tgaatttcaa ggagatctcc cgatgaaacg
     3001 tgttcgccgt ttcccgcaac ggttggttcg ctggacgagt ctgggtgttg gctttgcgct
     3061 cgtcttctct tgtttagtga cagttccttt acagtcggcc agcggcaaag acaaccgagt
     3121 cagaaccccg acgcgtcggg gtagcgaccg gctggcgcaa ggacaaagcg ctttgccgaa
     3181 cggcaaaggc cagaaggtga acgcactgcc gccgcagccg gggccaccgg aagcgacggt
     3241 gccgaatctg gatgaggcca ggcgcaagcg ccagcctcta cccgaagcgc cgctgcacat
     3301 tccgtcgagc gtgcgttcgc gacgcaatcc gttggtgccg cgcaatggct tgaaagttgg
     3361 cgacccgttg ccacttggat tgcaaggggc tacgaaccaa ccagcgaact caaacgccgc
     3421 gagtcaaccg ccacacttaa acgccaagga cgcaaagtat tccgcaaagg gcgcgaagag
     3481 ttttcctttg cgttcctctg cgaattcctt tgcggcctct gcgttaaaat ctttgtcttc
     3541 gttatctcag ccacagaagg gcacaagtgc ccgctctaaa cgttctgaac tcaatcatgg
     3601 tcgtgctaat gctcgcgccg ctgcgcctgc acccaccggc gacgatcaat ttgtgcagag
     3661 ctttgtcttt ggcgcgttcg tgcgttaccc gacctcaggc gagcaacaat actgggatga
     3721 cgtactgcgc aaggcttata cgtacggaca cggctcgatg atgattgcgg cgcgtgagtt
     3781 gggcaagacg ctctttgaat cggcagagta tgcggcgcgc aatcgttcga accatgatta
     3841 tgtttccgat ctgtactaca catatctggc gcgcccgccc gatgccggcg gctgggcgtt
     3901 ttgggaaggc cagtgcaacg catacggtcg tgagcaggtg cgtcgcgctt tcgatgaatg
     3961 cggcgagttt gcctatgacg tggcggcggt gacgccgaat ggttcggcat cgagcgctgc
     4021 gtcgtcgctg ttgagtgcac gcgtcgatcc gaacaatcag ggcggagatc aattgctggc
     4081 gcgcgatgcg gagtggggag ttggtttgct ttcgctgccg ggtcgctcag gtttggatct
     4141 cggcctgggg ctttcctatt catcggccgc ggtgtggacg cactcaggcc catacatcta
     4201 tttcgatgag gacaacggga cgccgagtcc cggtttccgt ctgggctttc ccacggtgca
     4261 agagctttca ttcgacgcgc aagtgggcgt gaacgtctat ctgctgatca cgccttccgg
     4321 ccagagagtg gaactaagga aagtcggcac gtcgaacgtt tacgaagccg ccgactcttc
     4381 ttatctgcaa ctgacagaca acagcggcag caatcccagc accctcttgg tgcgggccac
     4441 cgacggcaca cagatgagtt acaccaagct tcaggatgaa tggcgctgca cgcagatcaa
     4501 agatcgcaac ggcaactatc ttacggtcaa ctacgtttgg gcgggccaga tcgcgaacat
     4561 caccgacacg ctgggtcgcg tcatcacttt caattacgac ggtaactcga acctgatctc
     4621 gatcacccag ccgtggaatg gagcgacaca cacgtgggcc acgtttggct ggacttcgat
     4681 ctccgtgagt ccgggctttt c
//
LOCUS       DASZZE010000128         4082 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_3971, whole genome shotgun sequence.
ACCESSION   DASZZE010000128 DASZZE010000000
VERSION     DASZZE010000128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4082
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3971"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(147..347)
                     /locus_tag="VHD88_02535"
     CDS             complement(147..347)
                     /locus_tag="VHD88_02535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20694.1"
                     /translation="MEEESAKPEKVSGLGDDAYWLASPVGGALYVLKKNTFFRISVGG
                     AGDAKSKLSKSKTLARKVLGRI"
     gene            complement(453..842)
                     /locus_tag="VHD88_02540"
     CDS             complement(453..842)
                     /locus_tag="VHD88_02540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20695.1"
                     /translation="MPTKVYAIIFGLVVIAAGCKSNDTITPANSASAPAAASPATNGS
                     PSASPSSTATVSVAKSKIDSCKLLTSDDLKAVQGEPLKGALRSDRENGRLTISQCYYS
                     LPTASNSVVLNITTPGEGSDERSAKTF"
     gene            complement(881..1861)
                     /locus_tag="VHD88_02545"
     CDS             complement(881..1861)
                     /locus_tag="VHD88_02545"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HVS20696.1"
                     /translation="MSNKSEGASGRTDLSTTQGGSKNSAERQPALIFLRGELLAVPIP
                     LERNEVILGRALEADVRLSDSRASRLHARISTERDAATGEVRYRLTDLDSTNGTLLNG
                     KAIDKAFLHDGDKFEVGDQLIRFEMLDEIDREFQQQIHRLLVHDELTGLLTSKSFFSE
                     LRREADRAEAESMPFCVLMMDLDFFKDVNDTYGHLVGSETLEEVGAVVKGSLRAGDVG
                     ARFGGEEFAAFLLDADYAQGLVAAERVRSAIEKHEFPAVRRGGSDEQRTHRITISVGV
                     ASFPVDGRDPIQLVELADSALYRAKRSGRNRVCAYRPSTSVDEGQLRPRS"
     gene            2148..2804
                     /gene="ribA"
                     /locus_tag="VHD88_02550"
     CDS             2148..2804
                     /gene="ribA"
                     /locus_tag="VHD88_02550"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: protein motif:HMM:NF001591.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003935 - GTP cyclohydrolase II activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HVS20697.1"
                     /translation="MEANTLKEEPTEACPCPEAARPLSVERMAEAKLPTEFGDFKIGG
                     YRSLVSNEEFVVLSKGEMRPEVPTLVRIHSQCLTGDVFSSTKCDCGPQLHRTMQMIQE
                     EGCGAIVYQQQEGRGIGIINKIRAYALQDEGADTVEANERLGLAVDSREYRQCAEVLF
                     DLGLCKVRMISNNPGKLRALEEAGLEIVERVAIEIPSNETAVRYLQTKKEKLGHLLKV
                     "
     gene            complement(3144..3368)
                     /locus_tag="VHD88_02555"
     CDS             complement(3144..3368)
                     /locus_tag="VHD88_02555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HVS20698.1"
                     /translation="MRFKFDKKKSDTLRLNPKRGIGFEEARQLWSQPYYLDQRSDFPQ
                     QYRAIGWVSDHLYSVIFEIRRDKQGEYFTW"
     gene            3471..3629
                     /locus_tag="VHD88_02560"
     CDS             3471..3629
                     /locus_tag="VHD88_02560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20699.1"
                     /translation="MISNNPGKLRALEEAGLEIVERVAIEVPSSEPAAKYLQTKKDKM
                     GHLLKFEN"
     gene            complement(3697..>4082)
                     /locus_tag="VHD88_02565"
     CDS             complement(3697..>4082)
                     /locus_tag="VHD88_02565"
                     /inference="COORDINATES: protein motif:HMM:NF024299.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HVS20700.1"
                     /translation="LKLKADDSAAQLNLGIALFNLKKYDEAEMHLRESLKLNSSGPSA
                     HYYLGLTLVSLKRYDEARQELELAVNNGGETLALAHKYLGGLYMSAKRNKEAADELEK
                     YLKLDPKAADAERIRGTIKELRSKQ"
BASE COUNT          867 a         1135 c         1114 g          966 t
ORIGIN      
        1 ctccctctcc ctttgggaga gggctgggga gagggactta gacgggcagt aactcgtgta
       61 gctgatgtgc cgctccggcc tcgtttccac actcacgccc tctccctgac cctctcccaa
      121 tagggagagg gaagaagcgt ctgtcctcag attcgtccca gtactttacg cgccagggtc
      181 ttggacttgc tcagcttcga cttcgcgtcc ccggctccgc ccacgctgat gcgaaagaac
      241 gtattcttct tcaacacata gagcgcgccg ccgaccggac ttgcgagcca ataggcgtca
      301 tcgccaagcc cggaaacttt ttccggcttt gctgactcct cttccatctc accttccgag
      361 gcctgctctg cggctttgct ttctttcttg tcgcgatctc gatctcgctc tctctcgctg
      421 cctttttcct ctttggatac aaaagtgtcc cgctaaaaag tctttgcact gcgctcgtcg
      481 gagccttctc ccggcgtggt gatattcagc acgactgagt ttgacgcggt cggcagcgaa
      541 taatagcact gcgagatggt gaggcgtccg ttttcccgat cagaccgcag cgctcctttc
      601 aacggttcgc cttgaactgc cttgagatcg tcgctggtta gcagcttgca cgagtcgatc
      661 ttcgacttcg cgaccgagac agtcgccgtg gacgatggtg acgccgacgg agaaccgttg
      721 gtcgccgggc tagcagccgc cggcgctgat gcggaattcg caggcgtgat ggtgtcgttc
      781 gatttacagc ccgccgcgat cacgacgagg ccgaaaatga ttgcataaac tttggttggc
      841 atttaagcct tatccctcct aatgttctac ttacttgtct tcaagatcgc ggccttaact
      901 ggccttcgtc aaccgaagtt gacggccggt aggcacagac gcgattgcgt ccactgcgct
      961 tagcgcgata gagcgccgag tccgccaact ccaccagttg aatcggatcg cgaccatcaa
     1021 cagggaatga agcaacgcct acgctaatcg tgatgcggtg cgtgcgctgc tcatcactgc
     1081 cgccgcgacg cacagccgga aactcgtgtt tctcgatcgc cgatcgcacg cgttcggccg
     1141 cgaccagtcc ctgcgcataa tccgcgtcaa gcaggaacgc tgcgaactct tcgccaccaa
     1201 aacgcgcgcc tacgtcaccg gcgcgcagcg atcctttaac gaccgcgcca acttcttcca
     1261 gggtttcgct gccaaccaaa tggccgtagg tgtcgttcac atccttaaaa aaatcgaggt
     1321 ccatcatcag cacgcagaac ggcatcgact cggcctcggc gcggtctgct tcccggcgca
     1381 gctcagaaaa gaacgactta ctagtaagca atccggtgag ttcgtcgtgg accaacagcc
     1441 ggtgaatctg ttgctgaaac tcgcgatcga tctcgtcgag catctcgaag cgaatcagtt
     1501 gatcgcccac ttcgaactta tcgccatcgt gcaggaatgc tttgtctatc gccttaccgt
     1561 tcagcaaggt gccgttggtt gagtcgagat cggttaagcg ataccgaacc tcgcccgtag
     1621 ccgcgtcgcg ctcagttgag atgcgagcgt gcaagcgcga agcgcgcgag tcgctcagac
     1681 gcacgtcggc ttccagcgcg cggcccagaa ttacttcgtt tcgttccagc ggaattggca
     1741 ccgcgagtaa ttcgccgcgc aagaaaatca gcgcgggctg gcgctcagcc gaattcttgc
     1801 tgccgccctg ggttgtgctg aggtctgtgc gaccagaagc gccttcggat ttgttcgaca
     1861 tcctacaggt cgatcactgt cggggttggt tgagaagcct cgctcaggcg ttccttctac
     1921 tccaagtcgc gtatcttatc gcgtgatcag gacgacggca acaattctga gccacgaaag
     1981 ccgatcatcg gcagccggga gacaggtccg cttgttcgaa gcccaagctt gctcttataa
     2041 tttgtgcaag cgaaattcac cgaagtcagc ttacgatttc gaagagattg agtcggtgtc
     2101 tcttcggctt gatcgcgaaa ccaggagtgg gcagcattga gagattgatg gaagcaaaca
     2161 cactcaaaga agagccaact gaagcttgtc cttgcccgga agctgcgcgg ccgctttctg
     2221 tcgagcgcat ggcagaggcg aagctgccga ccgagtttgg cgacttcaag atcggaggtt
     2281 atcgatcgct cgtgagcaac gaggagtttg tcgttctttc caaaggtgag atgcgaccgg
     2341 aagtcccaac gctggtgcgg attcattcac aatgtctgac cggcgacgtg ttttcgtcca
     2401 cgaaatgcga ttgcggcccg caactccatc gcacgatgca gatgattcag gaagaaggat
     2461 gcggcgcgat cgtctatcag cagcaggaag ggcgcggcat cggcatcatc aacaaaatcc
     2521 gcgcctatgc gttgcaagac gaaggcgcag acacggtcga agccaacgaa cgtctgggcc
     2581 tggcggtcga ttcgcgcgaa taccggcagt gcgcggaagt gctttttgat ttgggcttgt
     2641 gcaaggtgcg tatgatttca aacaatccgg ggaagctgcg cgcgctggag gaagccggat
     2701 tagaaatcgt cgaacgtgtt gcgatcgaaa ttccgtcgaa cgaaaccgca gtcagatacc
     2761 tgcaaacgaa gaaagagaaa ctgggacacc tgctgaaagt ttgagccggg ctgacagaac
     2821 tactgccatt atcaactcac ctttcgcgct tttctggcca aataatgctg atcaagggct
     2881 tgccgaacga gtgtcttaat cactgtctgc cggctgacgt tcagctctct tgctgcttcg
     2941 tcaagttcgt ctagaaccgg tttcgtgaag tccacatcta tcggttgaat cgccggcatc
     3001 atctgacctc tattggtaaa ataactggag acgtcttctc ctcgttctgc tcgtcgggcg
     3061 attgattcgg ctggaaccgg acgtttggat ttaggcgttc tcttcataaa gttcttgttc
     3121 cttccgggtc gctttccaaa gggttaccaa gtgaagtact cgccctgctt gtctcgcctg
     3181 atctcgaaga tcacagaata aaggtgatca ctgacccagc cgatggcccg atactgttgg
     3241 ggaaaatcgg atcgctgatc gaggtaatag ggctgactcc acaactgccg ggcttcttca
     3301 aagccgatac cgcgcttcgg attcagtctg agcgtgtcgc tcttcttctt atcgaatttg
     3361 aagcgcacac tgtcatgtta taagagttat attagtagag caacggcaaa ttgaaaatta
     3421 gaactatttg agtatggcac cgtcggcggt gacgctctga gtgacgcgcc gtgatctcaa
     3481 acaacccggg gaagctgcgc gcgctggagg aagccggatt agaaatcgtc gaacgcgttg
     3541 ccatcgaagt tccatcctca gaacccgctg cgaagtattt gcagaccaag aaagacaaga
     3601 tgggacacct gctcaagttc gaaaactgat aaggctatct tctcggcgac tctttagttc
     3661 ttattggttt gcccggcgcg ccgggttcga cggtggttac tgcttacttc gaagttcctt
     3721 gatggtgccg cggattcgct cggcgtcggc ggccttgggg tcgagtttca aatacttttc
     3781 caactcatcg gctgcctctt tgtttctctt cgcgctcatg tagagaccgc ccagatattt
     3841 gtgagcgagg gcaagggtct ctccgccgtt gttaaccgcg agctcaagtt cttgccgcgc
     3901 ttcgtcatag cgcttcaggc tgacgagcgt gaggccaagg taataatgcg ccgatgggcc
     3961 agagctattc agtttcaggg attctcgcag gtgcatttcg gcttcgtcat atttctttag
     4021 attaaaaagc gcaatgccca gattaagttg tgcggctgaa tcgtcagcct tcagttttag
     4081 aa
//
LOCUS       DASZZE010000129         5057 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_215022, whole genome shotgun sequence.
ACCESSION   DASZZE010000129 DASZZE010000000
VERSION     DASZZE010000129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5057)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5057)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5057
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_215022"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..553
                     /locus_tag="VHD88_02570"
     CDS             <1..553
                     /locus_tag="VHD88_02570"
                     /inference="COORDINATES: protein motif:HMM:NF014647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="BMP family ABC transporter substrate-binding
                     protein"
                     /protein_id="HVS20701.1"
                     /translation="GGMDIGLIHRFETGYEEGAKAVNPNIKIVQNYVGVTDAAWNNPG
                     KGKEIALAQINKGADVIFTAAGNSGLGAFDAVEQAGNENGRATHFVIGVDSNQNMVKP
                     GFVLTSMVKHVDNAVYDIIKDVVDRKFKGGFHVFGLESDGVGYTLDQYNRDLIPAATL
                     DEVEAAKKRIIAGQIKVTDAMLK"
     gene            553..2064
                     /locus_tag="VHD88_02575"
     CDS             553..2064
                     /locus_tag="VHD88_02575"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HVS20702.1"
                     /translation="MIELRNITKRFGGVLANDQVNIKVEPGTIHAIVGENGAGKSTAM
                     RIAYGFYTSDSGEILISGQAREIRTPHDAIALGIGMVHQHFMLVEPMTVAENIVLGAE
                     PGSATSLDLKKADDEIRKVSDEFKLSVDPNATIENLSVGQQQRVELLKALYRHAQLLI
                     LDEPTAVLTPQEVQEFFAILRRMREQGKTIVIITHKLSEVLAISDSVTVMRDGRVVGD
                     LRTSATNAAELARLMVGREVLLRVEKPEAKAGATVLSTRGLSIVGRDGGKRVDSVSFE
                     VRAGEIVGIAGVEGNGQTELIEALAGLIPGSHLSGSIAFEGRDITRLDARKRKELGVA
                     HVPEDRHRRGLLLDFSLAENTILGVHYRKPAVSGNGILLDQKGIQRRTEQVIRDFDVR
                     PPNPALPARALSGGNQQKLIIGREFELPPKLLLVSQPTRGVDIGAIEFIHRKIVALRD
                     GGCAVLLVSAELEEVTGLSDRLLVLHNGQIAGEVDPKVATNEEIGLMMTGGHK"
     gene            2215..3333
                     /locus_tag="VHD88_02580"
     CDS             2215..3333
                     /locus_tag="VHD88_02580"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HVS20703.1"
                     /translation="MKLLREILFPLIAVLAAFIVGGIVVWIIGDSPFETYRLLIGSAF
                     SWPDGIGYTLFNATPLIFTGLAVAVAFRCGLLNIGAEGQLYMAAFATAWVGIKFGGVL
                     IKSPAGDVVSSPIANLPALVLLPLCCIVAIAAGAIWGGIPGLLKARFGSHEVINTIML
                     NFIAVALLSYFTQYHFKIPGDAIMQTAPISPSANLPTLGRFIPGLPARIPLNIAFIFA
                     VIACVLVYVFLWKTKWGYELRATGANPSAAEYGGISIRKQIILAMSISGGLAGMVGIN
                     EVLGYRHRYYDGFSANYGFVGIAVALLGRNHPVGVFLAAILFAILLRGGIFVDAFTPH
                     VSKDIVDMLQGIVIVFVAAEAMFRGPLKKFGLMKRAKV"
     gene            3722..4672
                     /locus_tag="VHD88_02585"
     CDS             3722..4672
                     /locus_tag="VHD88_02585"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HVS20704.1"
                     /translation="MRQIFTLSLLFSTIRLSTPLVLAALGGLYSERSGVINIALEGLL
                     LAGAFTAASVTFYAHSPWVGLGAAILAGALVAYIIALACIRFKADQVVTGTGINILFI
                     GLPAVLSGALFLSSGSTPQIPKENLLPVLYRFLPFMPQWRILTDVSVISLLALVVVFA
                     TRYVLYRTPFGLRLRAVGENPEAADAAGVGVNRMRYIGVILSGALAGIGGAYLSIGQS
                     SLFTRNMAAGRGFIALAALIFGKWRPVQTMLACLLFGLADALTIQMQGVVKLPWNPAE
                     DIPVQFIQMIPYVVTIVVLAGFIGQSRAPRALGTAYQKEG"
BASE COUNT         1042 a         1345 c         1501 g         1169 t
ORIGIN      
        1 cggcggcatg gacatcggtt tgatccatcg atttgaaacg ggctatgaag aaggcgcgaa
       61 ggccgtcaat cccaacatca agatcgtgca gaactacgtc ggtgttaccg atgcggcgtg
      121 gaacaatccc ggcaaaggca aagagatcgc tctggcgcaa atcaacaaag gcgcggatgt
      181 gatcttcacg gctgcgggta attcaggtct gggtgctttc gatgccgtcg agcaggcggg
      241 aaacgaaaat ggccgtgcga ctcacttcgt gatcggcgtc gattcaaatc aaaacatggt
      301 caagcccggc ttcgttttga cgagcatggt caagcacgtc gataacgccg tgtatgacat
      361 catcaaagac gtcgtcgacc gaaaatttaa aggcggcttt cacgtgtttg ggttggagag
      421 cgatggcgtt ggctacactc tcgatcagta caacagggat ttgattcccg cggcgacgct
      481 cgatgaagtt gaggccgcga agaaaagaat catcgccggc caaatcaaag ttacagatgc
      541 gatgctgaaa tagtgatcga gctaaggaac atcacgaaac gctttggtgg ggtgctggct
      601 aacgaccagg tcaacatcaa ggtcgagccg ggaacgatcc acgccattgt aggtgaaaat
      661 ggcgccggca aatccacggc gatgcgcatc gcctacggtt tttatacgtc ggacagcggc
      721 gagattctga tcagcggcca ggcgcgcgag attcgcacgc cgcacgacgc gatcgcgctc
      781 ggcatcggca tggttcatca acatttcatg ctggttgagc cgatgactgt cgccgagaac
      841 attgtgctcg gcgctgagcc ggggagcgca acgtcgcttg atctcaaaaa agccgatgac
      901 gaaattcgga aagtctcgga tgaattcaag ctctccgtcg atccgaacgc cacgattgaa
      961 aacctttcgg ttggacaaca gcagagagtg gaattgctga aggctcttta ccgtcacgcg
     1021 cagttgttga ttctcgacga gccgaccgcg gtcttgacgc cgcaggaagt tcaagagttc
     1081 ttcgcgatcc tgcgccgcat gcgcgagcaa ggcaagacga tcgtcatcat cacgcataag
     1141 ctatccgaag tgctagcgat ttcggacagc gtcaccgtga tgcgcgacgg tcgtgtggtt
     1201 ggcgatttga gaaccagcgc caccaatgcg gctgaactgg cgcgtctcat ggttgggcgc
     1261 gaggttttgc tgcgcgtcga gaagcctgaa gcgaaagcag gcgccacggt gttgagtaca
     1321 cgcggtcttt caatcgtagg acgcgatggt ggcaagcgcg ttgatagcgt ttcattcgaa
     1381 gtgcgcgccg gcgagattgt tggcatcgcg ggcgttgaag gtaacggcca gaccgaatta
     1441 atcgaagcgc tcgccggttt gatccccggt tcacacctct ctgggtcgat cgcgttcgaa
     1501 ggtcgagaca ttacgcggct cgatgcgcgc aagcgaaaag agttaggcgt tgcccacgtc
     1561 ccggaggatc gtcatcggcg cggtctgcta ctggatttca gtctggctga gaacacgatt
     1621 ctcggtgttc actatcgcaa gccggccgtg tccggcaacg gcattctgct ggatcagaaa
     1681 ggaattcagc gacgcactga acaggtgatt cgcgatttcg atgtgcgtcc gccgaatcct
     1741 gcactgccgg cgcgcgcact ctcaggcggc aatcagcaga agctgatcat tggtcgcgag
     1801 ttcgaactgc cgccgaagct cctgctggtt tcacaaccca cccgcggcgt ggacatcggc
     1861 gcgatcgagt tcattcaccg caagattgtc gcgcttcgcg acggcggttg tgccgtgctg
     1921 ctggtttccg cggagctgga agaagtgact gggctatctg atcgtctctt ggtgcttcac
     1981 aacggacaga tcgcgggcga ggtcgatccg aaggtcgcga cgaatgaaga gatcggattg
     2041 atgatgactg gtgggcacaa ataagtgccg taggcacgac atatttatag agcgcagcac
     2101 acctaaaaga tcactccgca gccgcgaaag caaaatgctt tcacggctgc ggaaagaaaa
     2161 aagggaaacg cccggtacta taaatatgac gcgcctgacg gcgctttgaa gccaatgaaa
     2221 ctcttacgcg aaatcctgtt tccgctcatc gcggtgctgg ctgcgtttat tgtcggcggc
     2281 atcgtcgtgt ggatcattgg cgacagccct tttgagacgt accgcttgct gattggcagc
     2341 gcgttttcgt ggccggatgg cattggctac acgcttttca acgcgacgcc tttgattttc
     2401 accggactgg cggttgcggt agcgtttcgc tgtggacttt tgaacattgg tgccgaaggg
     2461 cagctctaca tggcggcgtt tgccactgcc tgggtcggga tcaagtttgg cggcgtcttg
     2521 atcaaatcgc ccgccggcga cgtcgttagt tcgccgattg ctaacctgcc ggcgctcgta
     2581 ctccttccct tgtgctgcat cgtcgcgatc gctgccggcg caatctgggg cggcattccg
     2641 ggattgttga aggcgcgttt cggatcgcat gaagttatca acacgatcat gttgaacttt
     2701 atcgcggtcg cgctgctcag ttacttcacg cagtaccact tcaagattcc cggcgacgcg
     2761 atcatgcaga cagcgccgat tagccccagc gccaacctgc cgacgctggg cagattcatt
     2821 cccggcctgc cggcgcggat tccgctgaac atcgccttca tcttcgcggt gattgcgtgt
     2881 gtgctcgtct atgtattcct ttggaagacg aagtggggtt acgaactgcg ggcgacgggc
     2941 gcgaatccgt cggcggcgga atacggcggc atctcgatcc gcaagcaaat tattttagcg
     3001 atgtcgatct ccggcggatt ggccggcatg gttggcatta acgaagtgct cggctatcgc
     3061 caccgctact acgatggctt ttcggcgaac tacggattcg tcggcattgc cgtggcgttg
     3121 ctcggccgca atcacccggt cggagttttt ctggccgcga ttctgttcgc gattttgctg
     3181 cgcggcggaa tctttgttga cgctttcacc ccccacgttt cgaaagacat tgtggatatg
     3241 ctacagggaa tcgtgattgt cttcgttgcc gccgaagcga tgtttcgcgg cccgttgaaa
     3301 aagtttggct tgatgaaaag agcgaaagtg tgagcagtga gcagaacagg tcagtaccgc
     3361 ctgcgtaagc gggcgggttg gattaatgat gagagcgaaa gtatctgagt ttgaatcaag
     3421 ctcgcaatga ctgttgtccg agtatgggac gagcgacaat ttagtccgcg cagcggacgt
     3481 ccgaaaatag cccagcgatt tatcgctggg aaagagcgtc atttctaaac ctagtccgcg
     3541 aagcggacgg acgaaatgtc tcgatgattt caattttaat tttctgtcgc ccgtttcacg
     3601 ggcttatgtt caaatgggga accagtggta cccagcagtg aactgccggg ctattttcaa
     3661 tcgtccgctt cgcggacgta acgctcgttg ttgacctgga ccggctgata tagaaatcag
     3721 aatgcgccaa atctttaccc tatctctttt attctcgacg attcgattgt caacgccgct
     3781 ggtgctggcg gcgctcggcg gtctgtactc tgagcgatcg ggtgtcatca atatcgcgct
     3841 tgaaggcttg ctgctcgctg gcgcattcac ggccgcgtcg gtaacgttct atgcgcacag
     3901 tccgtgggtt ggacttggcg ccgcaattct cgccggcgcg ctggtcgctt acatcatcgc
     3961 gctcgcctgc attcgcttca aagccgacca ggtcgtgacc ggcactggca tcaacattct
     4021 cttcataggc ctgccggcgg tgttgagcgg cgcgctgttt ctttcttccg ggtcgacgcc
     4081 gcagattcca aaagagaatt tgctgccagt gctctaccga ttcttgccct tcatgccgca
     4141 atggagaatc ttgacggatg tttcggtaat ctcactgttg gccctcgtcg tcgtttttgc
     4201 cacgcgatac gttctgtatc gcacgccgtt cggcctgcgc ttgcgcgcgg tcggcgaaaa
     4261 tcccgaagca gccgatgccg cgggcgtcgg tgtgaatcgc atgcgttaca tcggcgtaat
     4321 cttgtcggga gcgctggccg gaatcggcgg cgcatatctt tcgatcggcc agtcgtcttt
     4381 gttcacgcgc aacatggccg ctggtcgcgg attcatcgcg ctggctgctt tgattttcgg
     4441 caagtggcgg cccgtacaga cgatgctggc ctgcttgctg tttggacttg ccgatgcgct
     4501 gacgattcaa atgcaaggtg tggtaaaact cccctggaat ccagccgagg acatcccggt
     4561 tcagttcatc caaatgattc cgtatgtcgt gacgatcgtc gtgctcgcgg gtttcatcgg
     4621 tcaatcgcgc gcgccgcgtg ctctgggcac cgcttaccaa aaagaagggt aagagctgtt
     4681 caaagttcaa cctgctagat tcttttccct ctcccttttg ggagagggcc agggagaggg
     4741 cgtgagtgtg gaaatcgagc gcggcgggca gattaaccac acgtcttagt ccctctcccc
     4801 agccctctcc caaagggaga gggagtcttt ccgcaagctg caaggttgtc gttcgatttg
     4861 gcaagctgaa gcttggacac ttaactggat tactgttgta atgtcttcag cgaaactcaa
     4921 gatgtcagcg gaaccaagtt cttcatcact ctacgaacgc gcagagaaag ccgcccgcat
     4981 gattcgcgcg cgcgctaacg ccgaggtgtc ggtcgcgatc gttttgggca gcgggctcgg
     5041 cgctttcgct gaagagc
//
LOCUS       DASZZE010000130         5645 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_4016, whole genome shotgun sequence.
ACCESSION   DASZZE010000130 DASZZE010000000
VERSION     DASZZE010000130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5645)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5645)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5645
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4016"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..286
                     /locus_tag="VHD88_02590"
     CDS             <1..286
                     /locus_tag="VHD88_02590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20705.1"
                     /translation="GTIFTFDKARDGMIDAVKGTSLSERSISLDGSPGRELRFSMKDS
                     SGAEYLMLARFYDIDRRVYVLQFITNKSSETEFESKANRYLDSFQVVKTP"
     gene            373..1251
                     /locus_tag="VHD88_02595"
     CDS             373..1251
                     /locus_tag="VHD88_02595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20706.1"
                     /translation="MNTRIKRSALRLAAVALTLSLAVVAYGQQRPLITEDVDIITPGS
                     MRIEAGIDFVQKARFPLSGLTGDLTRAGVIGINLGFAPNVEFQIEGVAENVLSINSRG
                     TSAIPLNLAANANSTNGVGDFTLWAKIKLRNETRHAPSFGFRFGVQLPNSNQARGIGL
                     NQTNAFGQVLVGKKFGQDGRVNTFGNLGIGILSAPTALFTQNDVLTYGLAGIVRLNRQ
                     FSFAGEVNGRANTRPGTGPLGTESQGEARFGMQIRASGMRFDVAGIKGLTKFSPHTGI
                     TVGVTYDTPSIFKPAK"
     gene            1357..1992
                     /locus_tag="VHD88_02600"
     CDS             1357..1992
                     /locus_tag="VHD88_02600"
                     /inference="COORDINATES: protein motif:HMM:NF020893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VTT domain-containing protein"
                     /protein_id="HVS20707.1"
                     /translation="MFDWLNVLARRLGYFIVHSPIYVAGPAMIAIGALDSSLLSLPEV
                     NDYLVVARCYTHPRAVFFFPLFAAIGSVIGCLLLYTILRRGGQAVLHRRFRIDHVLRV
                     ERAYARFGILALAVPALMPPPTPFKIFVATAGALQFPRRRFVLTILLARSLRYYVEGT
                     LAVFYGERVARFLKDNGLLIISVVTGIFLIALAIYLASGKGRAAVKRAKET"
     gene            2021..2659
                     /locus_tag="VHD88_02605"
     CDS             2021..2659
                     /locus_tag="VHD88_02605"
                     /inference="COORDINATES: protein motif:HMM:NF020893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VTT domain-containing protein"
                     /protein_id="HVS20708.1"
                     /translation="MKSFIHKITGGLTKLSHYLVLFGPFGLLAIAFLDSLMVPMPGGV
                     DAVLLLLSAARPAWMLIYVAAATIGSTAGCVGLYLISKRAGHRALRRFSEIKQKRVKD
                     LIDRYDVLSVLVASLLPPPFPFKLFVVSAGVFRLNLVRFTIAIAAGRTFRYLLEGYLA
                     AHYGEHAKDILARYYPAIGIGLAVLIIIVFVGKSLLRHARNAEPEPVSDVES"
     gene            complement(2681..3484)
                     /locus_tag="VHD88_02610"
     CDS             complement(2681..3484)
                     /locus_tag="VHD88_02610"
                     /inference="COORDINATES: protein motif:HMM:TIGR00573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004527 - exonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease domain-containing protein"
                     /protein_id="HVS20709.1"
                     /translation="MDIPRNLISDSALVQEAFELLRENGGQMTFTAIVDSVFRLSHVD
                     KELAASLVGDLVGNDPRFSIDNEQLLASNDESELRPLKEIDFVVLDVEALASKSVPAR
                     IIELGAYRVHANQIGDKFETLINPGLPLPRFIAALTGISDEMLKNAARFSEILDAWLD
                     FAGDAILVAHNSTFDLPLLNREIARVFPGYRMRNGELCTVNLARRVLPELHSHNLDSL
                     AEHFGIENTQRHRAAGDAFATSRILLRLLDQLAESGVRTLSEARGYQSS"
     gene            3525..4112
                     /gene="pyrE"
                     /locus_tag="VHD88_02615"
     CDS             3525..4112
                     /gene="pyrE"
                     /locus_tag="VHD88_02615"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: protein motif:HMM:TIGR01367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004588 - orotate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HVS20710.1"
                     /translation="MTADDVIDEFKSTGALLEGHFILSSGLHSAMYLQCAIALQSPAV
                     AEKFGAAIAQQFRNDTIETVASPAIGGLIIGYEVARHLGARFIWTEREAGRMILRRGF
                     SARAGERVLVVEDVITTGGSTRDTIEALCSAGANVVAAASIIDRSGGKADVGVPLFAL
                     ATLEVPAVSPDNCDACRRGESATKPGSRQAMPTRR"
     gene            4109..4861
                     /gene="truA"
                     /locus_tag="VHD88_02620"
     CDS             4109..4861
                     /gene="truA"
                     /locus_tag="VHD88_02620"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HVS20711.1"
                     /translation="MNYRLLLQYDGTDFHGWQMQGELRTVQGELTRALSLFDDREVVV
                     HGSGRTDAGVHAEGQVASVQLQRELTPQKLRSAINGNLPRDVRVLFVDAAPDDFHARY
                     SARSKTYVYRIVHGQVMSPFWSRYALHETRRLDLERMRACASQFLGKHDWTAFSAAQS
                     DAESRVRTISSLEIEDGWDGRGHCHLIEVAATANGFLRYMVRSIVGTVLAVGRGEIDE
                     ETIARALREGSRDLAGPTAPAHGLTLKSVQYD"
     gene            4925..>5645
                     /gene="uppS"
                     /locus_tag="VHD88_02625"
     CDS             4925..>5645
                     /gene="uppS"
                     /locus_tag="VHD88_02625"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl diphosphate synthase"
                     /protein_id="HVS20712.1"
                     /translation="MLADFAQVVKHGSRDEMLLASIDWDRLPRHVAIIMDGNGRWAAQ
                     RGQPRLAGHRAGVEAVRATVDTGARLGLGALTLYAFSTENWKRPRYEVDALMRMLRKY
                     LRLELDEIDRQNICFQTIGRIDALAPTVRNEIARASERTAKNTGMVLSVALNYGGRAE
                     IVDASRAAMKRLLAEGKSVGELTEEEIARGLYTHGLPELDLLVRTSGELRISNFLLWQ
                     SAYAEIYVTETLWPDFRRVHLL"
BASE COUNT         1137 a         1503 c         1684 g         1321 t
ORIGIN      
        1 cggcacgatt tttacgttcg acaaagctcg cgacggtatg atcgacgccg tcaagggaac
       61 atcgctgagc gaacgttcaa tcagtttgga cggctctcca gggcgtgaat tgcggttttc
      121 gatgaaagat tcctcgggag cagagtactt aatgctcgcg agattctacg acatcgaccg
      181 gcgagtttac gtgcttcagt ttattacgaa caagtcgtcc gaaaccgaat tcgagagcaa
      241 agctaacagg tatctcgatt ccttccaggt ggtgaagaca ccttagtaaa aagatccttt
      301 ggcgttgacg tcccgctctg cgggcattac aatccgcctg aattcaaagg cgatcgagaa
      361 aatcgaatca acgtgaatac ccgcatcaaa cgatctgctc ttcgcctcgc cgcggttgcg
      421 ttgaccctta gtcttgccgt agtcgcttat ggccagcaac gcccgctgat cactgaagac
      481 gtcgatatca tcacgccggg ctcaatgcgt atcgaagccg gaattgattt tgtgcagaag
      541 gcgcgttttc cactctccgg tttgaccggc gatctgacgc gcgcgggcgt gattggaatc
      601 aaccttggtt tcgctcccaa cgtcgaattt caaatcgagg gagttgctga aaacgttctc
      661 agtatcaact cgcgcggcac gtctgcgatt cctttgaatt tggccgcgaa cgcaaactcg
      721 acgaatggcg tgggcgactt caccctctgg gcgaagatca aactgcggaa cgaaaccaga
      781 catgcaccat cttttggttt tcgttttggc gtgcaactgc ccaactcgaa tcaggcgcgc
      841 gggattggct tgaaccaaac gaatgctttc ggccaggttc tcgtcggcaa gaagtttggc
      901 caggacgggc gcgtgaatac tttcggcaac ctgggcatcg gcatccttag cgcgccgact
      961 gcactcttta cgcagaatga cgtgttgacc tatggcctcg cgggaatcgt gcgcctcaac
     1021 cgacagttta gtttcgccgg cgaagtgaac gggcgcgcca acacgcggcc gggcaccggc
     1081 ccgctgggaa ctgaatcgca gggcgaagct cggttcggca tgcagattcg cgcttccggt
     1141 atgcggttcg acgtcgctgg gatcaaaggg ttgaccaagt ttagcccgca cacaggaatc
     1201 acggtaggcg tcacttacga tactccctca atctttaagc cagcgaagta aagcagtgac
     1261 aactgaccca gtgacaatga caagtgaaga gtgacaagtt agaatccgtt cgggcatttt
     1321 cttgtcacat atcactcgtc acttgtcact cgtcttatgt ttgactggct gaatgttctc
     1381 gccagacggc ttggctattt catcgtacac tcgccgatct acgtggccgg gccggcgatg
     1441 attgcaatcg gagcgctcga ctcgtcgctg ttgtcgcttc cggaagtgaa cgactatctg
     1501 gttgtggcgc gctgctacac gcacccgcgg gcagttttct tttttccgtt gttcgctgca
     1561 attggatcgg taattggctg tctgttgctt tacacaatcc tgaggcgggg cggccaggcg
     1621 gttttgcatc ggcggtttcg catcgatcac gttctgcgcg tcgagcgcgc gtacgctcgg
     1681 tttgggattc tggcgttggc tgtgccggca ctgatgccgc cgccaacgcc gttcaagatt
     1741 ttcgtcgcta cggccggcgc tctacagttt ccgcgccgcc gttttgtgtt gacgatcctg
     1801 ttggcgcgtt cgcttcgcta ttatgttgaa ggtacgttgg cagtatttta tggcgagcgc
     1861 gtcgcgcgct tcttgaagga caacggattg ctgatcatta gcgtcgtcac tggcattttc
     1921 ttgattgctc tggcgattta tctcgcgtcg ggaaagggaa gggccgcagt caagcgagcg
     1981 aaggagactt aatcgacatc tgaaaggact cacttcattc ttgaaatcat ttattcacaa
     2041 aattaccggt gggctgacga agctatcgca ctatctggtt ttgtttgggc cgtttgggtt
     2101 gttggccatc gcatttcttg attcattgat ggtgccgatg cccggtggcg tggacgccgt
     2161 gctgttgctc ctgtccgccg cgcgtccggc gtggatgttg atctatgtcg ccgccgcgac
     2221 gataggatcg acagcgggat gcgtcggcct gtatctgatt tcgaagcgcg cgggccatcg
     2281 agcgctgcgg cgcttttcgg aaataaagca gaaacgcgtg aaggatttga tcgaccgtta
     2341 cgacgtgctg tcggttttgg tcgcatcgct tttgccgccg ccttttccgt ttaagctatt
     2401 tgtcgtttcg gctggcgtgt tccggctgaa cctggtgcgc ttcacgattg ccattgctgc
     2461 gggacgcacg tttcgttatc tgctggaggg ctatctcgcg gcgcattacg gcgagcacgc
     2521 aaaggatatt ctggcgcgat actatccggc aatcggcatc ggtttggcgg tacttatcat
     2581 catcgtgttc gttggaaaga gtttgctgcg tcacgcaaga aatgccgagc cagagcccgt
     2641 gtcagatgtc gagagctaac tgagtgtcgc ccgatccgac ttagctggat tgatagccgc
     2701 gagcttccga caacgtgcgc acgccggatt ctgccagttg atccagcaat cgcaaaagaa
     2761 ttcgcgaggt cgcgaaggca tcgccggcgg cgcgatgacg ttgagtgttt tcaattccaa
     2821 aatgttctgc caaagagtcg aggttatggc tgtgcagttc aggcaaaacg cgccgtgcga
     2881 ggttcacggt gcaaagttcg ccgttgcgca tgcgatagcc gggaaacacg cgcgcgattt
     2941 ctcgattcag cagcggcaga tcgaacgtcg agttatgcgc gaccaagatc gcgtcaccgg
     3001 cgaaatcaag ccaggcgtcg aggatttcgg aaaacctcgc cgcgtttttg agcatttcgt
     3061 ctgaaatacc cgtgagcgca gcgataaacc gaggcagcgg caagccggga ttgatcagcg
     3121 tctcaaactt gtcgccgatc tggttcgcgt gaacgcgata agcgccgagt tcgatgattc
     3181 tcgccgggac cgacttgctt gcgagtgctt cgacatcgag cacgacaaaa tcgatttctt
     3241 taagcggtcg aagttcggat tcatcgttgc tggctaggag ttgttcattg tcgatgctga
     3301 accgcggatc atttccgacc aaatcaccga cgagcgaggc agccaattcc ttatcgacgt
     3361 gcgaaagccg aaatacggaa tcaacaattg ccgtgaaggt catctgtccg ccattttcgc
     3421 gcagcagctc gaaggcctcc tgcaccagcg cggaatcaga gataagattg cggggaatat
     3481 ccattgaaaa ggcattctag ctgctgggag aagtttttca agcgatgacg gcagacgacg
     3541 taatcgacga gttcaaatcg accggcgcct tgcttgaagg ccacttcatt ttatcgagcg
     3601 gccttcacag cgcgatgtat cttcagtgcg cgatcgcttt gcagtcgccg gccgtcgcgg
     3661 aaaagtttgg cgcggcgatc gctcaacaat ttcgaaacga tacgatcgag accgtcgcct
     3721 cgccggcgat tggcggtcta atcatcggct atgaagtcgc acgacacctc ggcgcgcggt
     3781 tcatatggac agagcgcgaa gccggacgca tgattctgcg ccgcggattt tctgcgcgag
     3841 caggcgagcg tgtgctcgtc gttgaagatg tgattacgac tggcggctca acgcgtgaca
     3901 ccatcgaggc attgtgctcc gccggcgcga atgtcgtggc ggccgcgtcg atcatcgatc
     3961 gctccggtgg caaagccgat gtcggcgtgc cgctctttgc gttggcgacg ctcgaagtgc
     4021 cggctgtttc tccggataac tgcgacgctt gccggcgcgg tgaatccgca accaagcctg
     4081 gcagtcgtca ggcaatgccc actcgtcgat gaactaccgc ctgcttctcc aatacgacgg
     4141 cacagacttt catggctggc agatgcaggg cgagttgcgt accgtgcaag gcgagttgac
     4201 gcgcgcgctt tctttgtttg atgaccgcga agtggttgtt catggttcag gtagaaccga
     4261 tgccggagtc catgccgaag gccaggtcgc gagcgtgcaa cttcagcgcg agctcacacc
     4321 acagaaactt cgcagcgcca tcaatggcaa cctgccacgc gatgtgcgcg tgttgttcgt
     4381 cgatgccgcg cccgacgatt ttcatgcgcg ctattctgcg cgcagcaaga cgtatgtcta
     4441 tcgcattgtt cacggtcagg tgatgtcgcc gttctggtcg cgttatgcgc ttcacgaaac
     4501 gcgacggctt gatcttgaaa ggatgcgggc gtgcgcgtcg cagtttttgg gcaagcacga
     4561 ctggaccgcg ttttccgcgg cgcagtcaga tgccgagtcg cgtgtgcgca cgatctcttc
     4621 gcttgagatc gaggacggat gggatgggcg cggacattgt cacctaatcg aagtcgcggc
     4681 gactgcgaat ggttttcttc gctacatggt tcgttcgatc gtggggacgg tgctggccgt
     4741 tggtcgcggc gaaatcgatg aagaaaccat tgctcgcgca ctccgcgaag gcagtcgcga
     4801 tttggccggc ccaaccgcgc cggcgcatgg cctgactctg aagagcgtgc agtacgattg
     4861 acagtgtctg cggtagcggc aagaatgaaa gcgctcggta aacgtcctaa tcgatatcaa
     4921 cattgtgctc gctgatttcg ctcaagtcgt caaacatggc agtcgcgatg agatgctgct
     4981 cgcgtcgatc gattgggatc gtctgccgcg acacgtcgca atcatcatgg acggcaatgg
     5041 ccgctgggcg gcacagcgcg gccaaccgcg actcgccggt catcgcgcgg gcgtcgaggc
     5101 ggtgcgcgcg acggttgata ccggcgcgcg gctgggtctg ggagcgctga cgctctacgc
     5161 gttttcaact gagaactgga aacggccgcg ttacgaagtg gatgcgttga tgcgcatgct
     5221 gcgcaagtat ctgcgtcttg aacttgacga aatcgatcgg caaaacattt gctttcaaac
     5281 catcggacgg attgacgcgc tggcgccgac tgtcaggaac gagatcgcgc gcgcgtctga
     5341 acgaaccgcg aagaataccg gaatggtctt gagtgtggcc ctgaattatg gtggtcgcgc
     5401 agagatcgtg gacgcatctc gcgcggcgat gaaacggctt ctggcggaag ggaagtcggt
     5461 tggtgagtta actgaagaag agatcgcgcg cgggctctac acacacggtt tgcctgaact
     5521 ggatttgctc gtgcgcacca gcggcgagtt gcgcatctcg aattttctct tgtggcagag
     5581 tgcttacgct gagatttacg tgaccgagac gctatggcct gactttcggc gggttcattt
     5641 gctcg
//
LOCUS       DASZZE010000131         2565 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_148614, whole genome shotgun sequence.
ACCESSION   DASZZE010000131 DASZZE010000000
VERSION     DASZZE010000131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2565
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148614"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..331
                     /locus_tag="VHD88_02630"
     CDS             <1..331
                     /locus_tag="VHD88_02630"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HVS20713.1"
                     /translation="LITQVITKLLDNAIKYSPERTAITVSTALEAEAVRVIIEDRGYG
                     VPPESLDRIWEKFYRVARDGQEKDEDSTGLGLAYVKEVVEQHGGSVAIESEVGRGSKF
                     SFALPRL"
     gene            complement(333..743)
                     /locus_tag="VHD88_02635"
     CDS             complement(333..743)
                     /locus_tag="VHD88_02635"
                     /inference="COORDINATES: protein motif:HMM:NF013052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SET domain-containing protein-lysine
                     N-methyltransferase"
                     /protein_id="HVS20714.1"
                     /translation="MKLAPGLAVAPSPINGKGCFATLRFARDRKIAEYTGERIPDLEA
                     QRRAHRSKLRICDIDGRWSLDGSRGGNGTHYINHCCEPNAFMKTLYGHVLFFALREIE
                     PGEEITVDYEQTLHPDSKRCRCGAASCRGTINRT"
     gene            complement(759..1274)
                     /locus_tag="VHD88_02640"
     CDS             complement(759..1274)
                     /locus_tag="VHD88_02640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20715.1"
                     /translation="MRLARTFSVLFLLLAFGAVFMRVDAQELSYGSSKVNYVVTFPSA
                     MWRLISEPDDIHQHAEFVYGDRNDGYLRIRKEALDEGLDIKEFARRDQSSHFLPGYVD
                     GKDEPFTGRLTGVTVSYEFTQAGKPMAGRTYYLQADSHTVYALRFTGMRDRLSRIRNQ
                     TDQIARSFKLK"
     gene            complement(1376..2113)
                     /gene="rph"
                     /locus_tag="VHD88_02645"
     CDS             complement(1376..2113)
                     /gene="rph"
                     /locus_tag="VHD88_02645"
                     /inference="COORDINATES: protein motif:HMM:TIGR01966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004549 - tRNA-specific ribonuclease
                     activity [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HVS20716.1"
                     /translation="MSFLRTDNRAADELRQARITPGFVANAEGSALIEIGSTRVICAA
                     SVEDKLPPHLRGQRTEGWVTAEYAMLPRSTGTRTARETGRGGPSGRTHEIQRLIGRSL
                     RAISNRKVLGERTITLDCDVLQADGGTRTAAITGAYVAFSIACARLLNERKITKSPII
                     SEVVAVSVGIVDGTPLLDLKYDEDSRAEVDMNIVCSGDGRFIEVQGTAEGSPFTREQM
                     DNLLALGSKGIAELVRLQRKAIGQAGR"
     gene            complement(2094..>2565)
                     /locus_tag="VHD88_02650"
     CDS             complement(2094..>2565)
                     /locus_tag="VHD88_02650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20717.1"
                     /translation="TKAIEKAEPNATVIERACPLFVPLAEEGWADAQVARTIAETYLK
                     DFCSNVDVLVLGCTHYPILEDVIQKVVGDQVKLIDSGEATAREVKSLLEEKSLARDKP
                     ETSARERRLCDDLDHFYVTDAAERFARVAKRFLGSKPSRLEAVEVWGNDELSTH"
BASE COUNT          537 a          737 c          702 g          589 t
ORIGIN      
        1 cttgattact caggtgatca caaagctgct ggacaatgcg atcaaataca gcccggaacg
       61 cacggcaata actgtttcga cggcgctcga agccgaagct gtgcgcgtga tcatcgaaga
      121 tcggggctat ggagttccgc cagagtcact cgatcgaatt tgggaaaagt tttaccgcgt
      181 cgctcgcgac ggacaagaga aagacgaaga ctcaaccggt ctgggtttgg cttatgtaaa
      241 agaagttgtc gagcagcacg gcggatcggt agcaatcgag tcggaagtag gtcgcggatc
      301 gaagtttagt tttgcgctgc caaggctttg attcaggttc tgttaatcgt ccctctgcaa
      361 ctcgcggcgc cgcatcggca tcgctttgaa tccggatgca atgtctgttc gtagtcaaca
      421 gtgatctcct caccgggctc aatctctctt aacgcaaaga acagcacgtg gccgtagagc
      481 gtcttcatga aggcgttcgg ttcgcaacag tgattgatgt aatgcgtgcc gttgccgccg
      541 cggctgccgt ccaaactcca gcgaccatcg atgtcgcaga tgcgaagttt acttcgatgc
      601 gcgcggcgct gagcttccag atcgggaatt cgctcgccgg tgtattcagc gatcttgcgg
      661 tctcgcgcga agcgtaaagt cgcgaaacaa cctttgccgt taatcggtga gggggcaaca
      721 gcgagaccgg gcgcgagttt cattgccgtc gcgggaagtt atttcaactt gaagctgcgc
      781 gcaatctgat cggtttgatt gcgtatgcgc gagagtctgt cgcgcatccc ggtgaagcgc
      841 agcgcataaa ctgtgtggct gtctgcttga agataataag tgcggccggc catcggtttt
      901 cctgcttgag tgaattcgta cgaaacagtc acgcccgtca gacggcccgt gaaaggttca
      961 tctttgccat caacgtagcc cggcaagaaa tgacttgact gatcgcggcg cgcgaactct
     1021 ttgatgtcca atccttcgtc gagagcttcc ttgcgaatgc ggaggtagcc gtcattgcgg
     1081 tcgccataga cgaattccgc atgctggtga atgtcgtcgg gctcgctgat caggcgccac
     1141 atcgccgacg gaaacgtaac gacatagtta actttgctgc tgccataact tagttcctgt
     1201 gcgtcaacgc gcatgaacac tgcgccgaag gccagcagaa gaaaaagcac tgaaaaggtt
     1261 cttgctaatc gcactatcaa actccttatg ctcataacgt ggccggtcgc cacaaactat
     1321 tcagatgcgc gccatccgag cgttgttgtc ctcgcgtcac atcgttaact ggcagctatc
     1381 ttcctgcttg cccgatcgct ttgcgctgaa gccgcacgag ttccgcgatt cctttgcttc
     1441 ccagcgccag caagttatcc atttgctcgc gcgtgaacgg cgagccttca gccgtgccct
     1501 gcacttcgat gaagcggcca tcgccgctgc agacgatgtt catgtcaact tcggctcgcg
     1561 aatcttcgtc gtatttgaga tcaagcaacg gcgttccgtc aacaatgccg acgctcaccg
     1621 ccacaacttc gctgatgatt ggggactttg tgatcttacg ctcgttcagc aagcgcgcac
     1681 acgcaatcga aaacgcgacg taggcgccag tgatcgcggc ggtgcgcgtg ccgccgtcgg
     1741 cttgcaacac gtcgcagtca agcgtaatcg tgcgttcgcc cagcactttg cgatttgaaa
     1801 tcgcgcgcag gctgcggcca atcaagcgct gaatctcgtg cgtgcgtccc gatggtccac
     1861 ctcgacctgt ttcgcgcgcc gtccgcgttc ctgtggaacg cggcagcatc gcgtactcag
     1921 ccgtgaccca accttcggtt cgttggccgc gcaagtgcgg tggaagtttg tcttcaactg
     1981 aagctgcgca gattacgcgc gtcgagccaa tttcgatcag cgccgagcct tcagcgttcg
     2041 ctacgaaacc aggcgtaatg cgagcttgcc gaagctcgtc agcagcgcgg ttgtcagtgc
     2101 gtagaaagct catcgtttcc ccaaacttca acggcctcta gccgcgacgg cttacttccc
     2161 agaaatcttt tggcgacgcg cgcgaaacgc tccgccgcgt cggttacgta aaagtgatcc
     2221 aaatcatcgc acaagcggcg ctcacgcgca ctggtttccg gcttgtctcg ggccaggctt
     2281 ttttcttcta atagcgactt cacttcccgc gccgtcgctt cgcccgaatc gatcagttta
     2341 acttgatcgc cgacgacttt ctgaatcacg tcctccagga ttgggtaatg cgtgcagccg
     2401 agcacgagca catcaacatt cgaacaaaaa tctttcaagt aagtttcggc aatcgtgcgc
     2461 gcaacctgtg cgtcggccca accctcttcg gccagcggca cgaacaacgg gcaagcacgc
     2521 tcgatgacgg tcgcgtttgg ctcggccttt tcgatcgctt ttgtg
//
LOCUS       DASZZE010000132         5573 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_313617, whole genome shotgun sequence.
ACCESSION   DASZZE010000132 DASZZE010000000
VERSION     DASZZE010000132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5573
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_313617"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..167
                     /locus_tag="VHD88_02655"
     CDS             <1..167
                     /locus_tag="VHD88_02655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_061524768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HVS20718.1"
                     /translation="IESFWSYAKRRLQKFNGVPARTFYLHLKECEYRFNNRDHNLARE
                     LLKLLERYPL"
     gene            343..1878
                     /locus_tag="VHD88_02660"
     CDS             343..1878
                     /locus_tag="VHD88_02660"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HVS20719.1"
                     /translation="MIAVAPKDAAAVILLRPNTDPNNPEVFWVKRSTKLAFLGGFYAF
                     PGGQREPNDAEAQVENCDDQDKAAMISCAAREVFEEIGVLLARGAETLTIGQRTSLLD
                     DLESRRMTWSELLQHYGLRLNANDFTLVGRWVTPPFAPRRFDTWFFLVNCPAKQQPHV
                     TEDSELERGEWIYAGDAYAKWERSEIIAVPPVLHALRTLAGGITGDLVERFLSVPEAH
                     REPTRRIEFHPNYICFPVRTPTKPPATHTNCYLIYNSSEILVIDPGSPYEDEQGALAA
                     CVDDLIAAGRTVREIILTHVHPDHVAGVNALNDHLEKKQGARVPVAAHRLTSESLKNQ
                     VNVDRFIEDGEVLELNGQPSIKWRALYTPGHARGHLCFYDERTGALISGDNIVGFGSV
                     LIDPPEGNMRDYLNSLERMRALPNLTVLFGGHGPAIANPYEKIDEYISHRLQREELIL
                     EAVLEGSSTSKEIVARVYTDVSPKAHAMAERAVLAHLEKLEADGLITQTSNDTYQPTR
                     TND"
     gene            1976..3445
                     /locus_tag="VHD88_02665"
     CDS             1976..3445
                     /locus_tag="VHD88_02665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20720.1"
                     /translation="MERARTLGELKESGYRSVSVKDELRANLICKLKRREKLFPGIVG
                     YDESVIPQLINAILARHNLILLGLRGQAKSRIIRQLTNLLNDQIPIIAGSEVNDDPFN
                     PISAYGRQMIELHGDSAHIAWVDRDARFVEKLATPDVTIADIIGDVDPIKAAKGGHLL
                     SDELTIHYGLLPRANRGIFAINELPDLAGKIQVGLFNIMQEGDVQIKGYPVRLPLDVM
                     LVFSANPEDYTARGKIISPLKDRIGTEIMTHYPKEIELGVEITRQEAWTARDGFKDRL
                     LIPEFIRETIEQIAFEARDDQRIDKHSGVSQRLPISVMESVVSNAERRALLTGEERIV
                     PRIADVYAAIPSMTGKIELEYEGEQIGANRIAKDLIKRAAGEIFEGYFVGIDFAGAVA
                     WFDQGNTVRLTDTASAEECLMLLESVPDLIDTVLIPFDFKRKDEAHTVAACEFALEGL
                     YAENKISRNEEGGYTAVTKAKKDRRGMIYDDLTETGKYS"
     gene            3453..3932
                     /locus_tag="VHD88_02670"
     CDS             3453..3932
                     /locus_tag="VHD88_02670"
                     /inference="COORDINATES: protein motif:HMM:TIGR04256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GxxExxY protein"
                     /protein_id="HVS20721.1"
                     /translation="MDTDKHGFKHSEITDKIIKVFFEVYNELGHGFLESVYERSLEIA
                     LNSLGLKVCRQIQIPVWFRGHSVGDFTADMLVADCILLELKAARTLDSSHQAQLLNYL
                     RATEIEVGLLLNFGLKPEFKRLIFDNPRKTNRGKPGISVAALLIPDGQDEECNELLP"
     gene            3985..5319
                     /locus_tag="VHD88_02675"
     CDS             3985..5319
                     /locus_tag="VHD88_02675"
                     /inference="COORDINATES: protein motif:HMM:NF024909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HVS20722.1"
                     /translation="MKFTRYSKFNGLDVFGINLGDLMEGLSDSLLSSGYDDDYYWTRQ
                     RTPQDTSLDALRRALLQALMDQDLLSQHQIQQMLDENEGQYEGSQLQEMLNQLIERLV
                     EEGYLTLREQPETQRQRQEMMRGGGEGQIEEPLPRNIKFEVTEKGLDFLGYKTLRNLL
                     GSLGKSSLGRHDTSHLATGIEAEAASKPYEFGDTINLDVNTTLLSAIQREGLSVPINL
                     EYRDLHVHQCDYQSSCATVVMLDCSHSMILYGEDRFTPAKRVALALGHLIRTQYPGDS
                     LKIVLFHDTAEELPLAKLATTQVGPYHTNTAEGLRLARRILQAQRKDMKQIVMVTDGK
                     PTACFLDGASMSTAGRSAGRMPALPAGRRLYKNSMGGDPFVMEATFREVQACRKAGIM
                     INTFMLASDYYLVEFVKQMTAMTNGKAYFANPSNLSQFVLIDFLRRRKSRVK"
     gene            complement(5322..>5573)
                     /locus_tag="VHD88_02680"
     CDS             complement(5322..>5573)
                     /locus_tag="VHD88_02680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20723.1"
                     /translation="HLIVRLQLALKPNQTGIYRAELLTIDDQSIFSAQSLQSADTDGS
                     KVDFDIPAALLKTGDYHVKLSRADGGSKGSVASYYFRVQ"
BASE COUNT         1310 a         1495 c         1540 g         1228 t
ORIGIN      
        1 ggatcgagag cttctggagt tacgccaagc ggcgcttgca gaagttcaac ggcgtgccag
       61 ctcgtacctt ctatttgcat ctgaaagaat gcgaatacag gttcaacaac agagaccata
      121 acctggctcg cgagttactt aaactacttg aacgttaccc gctctagatg ctgtttgcta
      181 ctctagagcc ttgtcttttg aggatgcgga gaagctcgac gaagtgcgaa gagcgctgcg
      241 ccgggaagac ctcaagcgag caagccaatt ggctcgcgtt ttcgaactca caccagttcg
      301 cgcctgactt gcaaccaatc ttcagtggcg gtgaatgtcc cagtgatagc tgtcgccccg
      361 aaagacgccg ccgccgtaat tctccttcgt cccaacaccg atccgaacaa tcccgaggtc
      421 ttctgggtta agcgcagcac gaaactcgct tttctcggcg gcttctacgc atttcccggc
      481 ggtcagcggg aaccgaatga tgctgaagct caagttgaaa actgcgacga tcaagataag
      541 gccgcgatga ttagttgcgc ggcgcgcgaa gtctttgaag aaatcggagt gttgctcgcc
      601 cgcggtgcgg aaactctcac gattgggcag cgcacttcgc tgcttgacga tcttgaatca
      661 aggcgcatga cgtggtcgga gctacttcaa cattacggcc tgcgtctcaa cgcaaacgat
      721 ttcactcttg tcggccgctg ggtaactcct ccttttgctc cgcgcagatt cgacacctgg
      781 ttctttctgg tcaattgccc agcgaagcaa cagccacacg ttacggaaga ttcggaactt
      841 gaacgcggcg aatggatcta cgcgggtgac gcgtatgcga aatgggaacg cagtgagatc
      901 atcgccgtgc cgcccgtgct gcatgcgcta aggactttgg ccggtggcat cactggtgat
      961 ctcgtcgaac gttttctctc tgtgccggag gcgcaccgcg agccgacgcg ccgcatagag
     1021 tttcacccta actacatttg ctttcccgtg cgcacgccga cgaagccgcc ggccacgcac
     1081 accaactgtt atttgattta caactcaagc gagattctgg tgatcgatcc cggttcgcct
     1141 tatgaagatg agcaaggggc actggctgcg tgcgttgacg atttgattgc cgcaggaagg
     1201 accgtgcgcg agatcatcct tacgcatgtt cacccggatc acgtcgccgg tgtgaatgct
     1261 ctgaacgatc atttggaaaa gaagcagggc gcacgcgttc cggttgcggc gcatcgtctg
     1321 acgagtgaat cgctgaagaa tcaagtcaac gtcgatcgct ttatcgaaga tggcgaagtg
     1381 ttggaactga atggccagcc ttcgatcaag tggcgcgcac tctacacgcc gggtcatgcg
     1441 cgggggcatc tttgctttta cgatgaacgt acgggtgctc tcatctccgg ggataacatc
     1501 gtcggctttg gttccgtgct catcgatccg ccggaaggaa acatgcgcga ttatcttaat
     1561 tcgctcgaac gaatgcgcgc gttgccaaat ctcacggtgc tgttcggtgg ccatggtcca
     1621 gcgatcgcga atccgtacga aaagattgac gaatacatct cacatcgtct gcaacgcgaa
     1681 gaattgatcc tggaggcagt gctcgaaggc agttcgacgt ccaaagaaat cgtcgcgcgc
     1741 gtctatacag acgtttcgcc gaaagcgcat gcgatggccg aacgagcggt gctggcgcat
     1801 ctggagaagt tggaggcgga tggtttgatc acgcagactt ccaacgacac atatcaacca
     1861 acgcgaacca acgattaaac gcagaggacg ctgagggact cgcaaaggta cgcagagaag
     1921 acctccgcgg ccctttgcgt ttccctttgc gtcctttgcg gttaaaatcg tgcccatgga
     1981 acgagcaagg actttaggcg agttaaaaga gagtggttac cgaagcgtct cagtcaaaga
     2041 cgagctgcgc gcgaacctga tctgcaagct gaagcgacgc gagaaacttt ttcccggcat
     2101 cgtcggttac gatgaatcgg ttatcccaca gctaatcaac gctattctgg cgcggcacaa
     2161 cttgattctg ctgggcctgc gcgggcaagc aaagagtcgc atcattcgcc agctaacaaa
     2221 tcttctaaac gatcaaattc cgatcattgc cggttcagaa gtcaacgacg atcctttcaa
     2281 tccgatcagc gcctatggcc ggcagatgat cgaactgcac ggcgactcag cgcacattgc
     2341 ctgggtcgat cgcgacgcgc gctttgtgga aaagctcgcg actcctgacg tgaccattgc
     2401 cgacattatc ggcgatgtcg atccgatcaa ggctgcaaag ggtggtcatc tgctcagcga
     2461 cgagttgacg attcactacg gcctcttgcc gcgggcgaat cgcggcatct tcgcgatcaa
     2521 cgaactgccg gatctcgccg gcaagattca ggtgggcctc ttcaacatca tgcaggaagg
     2581 cgacgtgcag attaagggtt atccggtgcg tctgccgctc gacgtgatgc tcgtgttctc
     2641 ggcgaatccg gaagactaca ccgcgcgcgg aaaaatcatt tcgccgctca aagatcgcat
     2701 cggcaccgag atcatgacgc attatccgaa agagattgag cttggcgtgg aaattacgcg
     2761 acaggaagct tggaccgcgc gcgacggctt caaagatcga ctgctaatcc ctgaattcat
     2821 ccgcgagacg attgaacaga tcgccttcga agctcgcgac gatcagcgta tcgacaaaca
     2881 ctccggcgtg tctcagcgct tgccgattag cgtgatggag tccgtcgttt ccaatgccga
     2941 acgccgcgcc ctgctgaccg gcgaagagcg aatcgtgcca cgcatcgctg acgtttacgc
     3001 cgcgattcct tcgatgacgg gcaagatcga actcgagtac gagggcgagc agatcggcgc
     3061 caaccgcatc gccaaagatt tgatcaaacg cgccgccggc gagatcttcg aaggctactt
     3121 cgtcggcata gacttcgccg gcgccgtagc ttggttcgat caaggcaaca ctgtgcgatt
     3181 aactgacacg gcatcagcgg aagaatgcct gatgctgctc gaatcagttc ctgacttgat
     3241 cgacacggta ctgattccgt tcgacttcaa acggaaagac gaagcgcaca ctgtggctgc
     3301 gtgcgaattc gcgcttgaag gcctgtacgc cgaaaacaag atcagccgca acgaagaggg
     3361 cggctacacg gcggtgacca aagcgaagaa agatcgacgc gggatgattt atgatgacct
     3421 caccgaaaca ggaaagtaca gttaggccac agatggacac ggataaacac ggattcaaac
     3481 actcagagat aactgacaag atcattaagg tcttctttga ggtctacaac gaactcggcc
     3541 acggatttct tgagtcggtt tacgagagat ctttggaaat cgcgctgaat tctttaggcc
     3601 tcaaagtttg cagacaaatt caaatcccgg tctggtttcg cgggcacagc gtcggcgatt
     3661 tcactgctga tatgttggtc gccgactgca ttcttttgga actcaaagcg gctcggactc
     3721 ttgactcatc acatcaagct caactactga attatttgcg cgcgaccgag atcgaggttg
     3781 gtttacttct gaactttggg ctgaagccgg aattcaaacg actgatcttc gataatcccc
     3841 gtaagacaaa ccgcggaaag ccgggcatat ctgtcgctgc tcttctcatc cctgacggtc
     3901 aggatgaaga atgtaatgag ctgctgcctt gacttggtta tcttctgatc tgcgtttatc
     3961 cgtgttcatc tgtggctgat tgcaatgaag ttcacgcgct actcaaaatt caatggcctc
     4021 gatgtcttcg ggatcaatct tggcgacctg atggaaggtc tgtctgattc cctgctctct
     4081 tcgggttacg acgacgatta ctactggacc cgccagcgca cgccacaaga cacttcgctt
     4141 gacgcgttgc ggcgcgctct gctccaggcg ctgatggatc aagacctcct cagccagcat
     4201 cagattcaac agatgctgga cgagaacgaa ggccagtacg aaggttcgca gcttcaggag
     4261 atgttgaatc aactgatcga gcgtttggtc gaagagggct atctgacttt gcgcgaacag
     4321 cccgagacac aaaggcagcg acaagaaatg atgcgcggcg ggggcgaagg ccagattgaa
     4381 gaaccgctgc cgcgcaacat caagtttgaa gtcaccgaga agggtttgga ttttctcggt
     4441 tacaagacgc ttcgcaatct gctcggaagt ttaggcaaga gttcgcttgg tcgccacgac
     4501 acttcgcatc tcgcgaccgg catagaagcc gaagccgcca gcaagcctta cgagtttggc
     4561 gacacgatca atctcgatgt gaatacgacg ttactgtcgg cgattcagcg cgaaggccta
     4621 tcggttccga tcaacctcga ataccgcgac ctgcacgttc atcagtgcga ttatcaatcg
     4681 tcgtgcgcga cggtggttat gctggattgt tcgcactcga tgattcttta cggcgaggat
     4741 cgcttcacgc cggcaaagag ggttgcgctg gcgctcggac atcttattcg cacgcagtat
     4801 cccggcgact cgttgaagat tgtgctgttc catgacacgg cggaagagtt gccgctggcg
     4861 aaactcgcga ccacgcaggt tgggccctat cacacgaaca cggccgaagg attgcggctg
     4921 gcgcgacgca ttctgcaagc acaacgcaaa gacatgaagc agatcgtaat ggtgacagac
     4981 ggaaagccga cggcgtgttt tttggatgga gcgagcatgt ccactgccgg aagaagtgcg
     5041 ggcaggatgc ccgcgctccc ggcaggaagg cgactctaca agaattcgat gggcggtgat
     5101 cccttcgtga tggaagcaac gttccgcgaa gttcaggcgt gtcgcaaggc cggcatcatg
     5161 attaatacat tcatgctggc cagcgattac tacctggtcg aattcgtcaa gcagatgacc
     5221 gccatgacga acggcaaagc ttactttgcc aatccgtcga atctctcaca atttgttctg
     5281 atcgattttc tgcgccgcag gaagagcagg gtcaagtaat tctattgcac tcgaaagtaa
     5341 tagctcgcga cgcttccctt cgatccaccg tcggctcggc tcaacttaac gtgataatca
     5401 ccggtcttca gcaaggctgc tggtatatcg aaatccactt tgctgccgtc agtgtcagcc
     5461 gactggagcg attgagcgct aaagatgctt tgatcgtcga tggtcaagag ttccgctcga
     5521 tagattccgg tttgattcgg tttgagcgcg agttgcaagc gcacgatgag gtg
//
LOCUS       DASZZE010000133         4026 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_313628, whole genome shotgun sequence.
ACCESSION   DASZZE010000133 DASZZE010000000
VERSION     DASZZE010000133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4026)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4026)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4026
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_313628"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1021
                     /locus_tag="VHD88_02685"
     CDS             <1..1021
                     /locus_tag="VHD88_02685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20724.1"
                     /translation="KDALLMIPGAGLTLAEEMGLSSKADRISNVGGIGNPKYTREADS
                     PFSRLQLLADLNRPPQIKFNDLASAVNTPVIEDNPLNFDIRVDFFRQSDERVITAFTI
                     QTDNQSLVFKDSGGLQEAQLNIFGKITHVSGRRAGVFEDPVITRATTQELTEAKGRKS
                     AYQKAVALAPGRYRIDIIVRDVASGATGVRHQGFEVPKYDPAKLSTSTLVLAVKLEGL
                     GDQPAVGMFTIGNAKVIPNVSGTFHRGSPVGVYMQIYNAGIDQTTLRPAVDVEYALMK
                     DGKELGKQLEDWRGNSDAGQRLTLAKLIDSRGLTPGDYTAEVRVRDHVSGQSLVQTAK
                     FTILQ"
     gene            complement(1904..2902)
                     /locus_tag="VHD88_02690"
     CDS             complement(1904..2902)
                     /locus_tag="VHD88_02690"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HVS20725.1"
                     /translation="MKKRYLLAGGLGLVAGAVATKLLTRPRDVRWSDSINLIYHPEHS
                     WFTTIDGVRMHYQEAGDEKAPPMILIHGFISSTLIWSDVFLPLAQAGFRVIAPDLPGY
                     GYSEKPRDGDYTIESQAHAVAGLMDRLGIEKAVVVGASYGAAIAAALALDHPERVDRL
                     VLIGAVSNDEPKKKLLLRILRLPLVGDVVTPLFLGSRWILRKRTEEVYRRIGLPLDEH
                     KLAARHHLLATANTHRTMIRTVRRWSANRIARDAHLIRQPTMLVWGEDDGHIPLSDGF
                     RLRDAMPKARLIVFRNCGHLPPQEFPKQFVGLVSEFCKAEEKKAASLKFKRRKTRK"
     gene            complement(3101..>4026)
                     /gene="truB"
                     /locus_tag="VHD88_02695"
     CDS             complement(3101..>4026)
                     /gene="truB"
                     /locus_tag="VHD88_02695"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: protein motif:HMM:TIGR00431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004730 - pseudouridylate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HVS20726.1"
                     /translation="VARVRKIIGERRVGHTGTLDPFATGVLAVLVGRATRLAQFLSGA
                     EKEYEAVIRLGYATDTGDLTGTPIENEESESHAKAQSTQSIGKEDIETALASLRGEIE
                     QTPPMYSAKKIGGKKLYELARRGEGVERKTVRVTVSQFEALALDGSLLKTNYDGTCDL
                     AVRVVCSAGTYVRVLAEDFGQRVGIGAHLVELRRTRAGAFRIQDAITLDQLNELVETG
                     SIEDALISPDAALAHLPSVQLSHGEVKRVCHGIDLQIEDAVSSSWSNRQAVRMRDAAY
                     LLIAVGVHDTERKFIHPTVVIANSEQSSESH"
BASE COUNT          905 a         1152 c         1100 g          869 t
ORIGIN      
        1 gaaagacgct ctgttgatga ttcccggcgc cggcctgacg ctggccgaag agatgggact
       61 ctccagcaag gctgatcgta tcagcaacgt gggcggcatc ggcaatccca aatacacccg
      121 tgaagccgac agtccgtttt cgcgcctgca gcttctcgcc gatttgaacc ggccgccgca
      181 gatcaagttc aacgatctgg cctcggccgt aaacacgccg gtcatcgaag acaatccgct
      241 caactttgat attcgggttg attttttccg ccagtcggac gaacgcgtga ttacggcgtt
      301 tacgattcag accgacaacc agagcctggt gttcaaggac agcggtggtt tgcaggaggc
      361 gcagctcaat atcttcggaa agattaccca cgtttccgga cgtcgtgccg gcgtttttga
      421 ggatccggtg attacgcgcg ccaccacgca agaactgact gaagcgaaag ggcgcaagtc
      481 ggcttatcaa aaggcggtgg cgctggcgcc gggccgatac cggattgaca taatcgttcg
      541 cgacgtcgcg tcgggcgcaa ccggcgtgcg gcatcagggc tttgaagtac ccaagtatga
      601 tccggccaag ctttccactt cgacgctggt gctggcggtg aaactcgaag ggctcggcga
      661 tcaacccgcc gtgggcatgt tcacaatcgg caacgcgaaa gttattccga acgtgtcggg
      721 tacgtttcac cgaggctcgc cggtcggcgt ttacatgcag atctacaacg ccggaatcga
      781 tcagacgacg ctgcgccccg cggtcgatgt cgaatacgct ttgatgaaag acggcaagga
      841 actcggcaag cagttggaag actggcgtgg caacagcgac gccggacagc gtctgacgct
      901 ggcgaaattg atcgactcgc gcggcttgac gcccggtgat tacactgccg aagtccgcgt
      961 gcgcgatcac gtcagcgggc aatcgctggt acaaacagca aagtttacga tcttacagta
     1021 aggtacccat tcaaggaccg gctctcgatt gtaaaacgga tcgcggaagt ataccgccgc
     1081 tccgcgcatg ccttcgcttc gaaacagtcc ataaatgcct ccgaatccga gtcccgcact
     1141 gctatactct taacgtgaaa atacgacagt tcagcatccc agttgtccct gcatttgttg
     1201 cttgtctgcc acggcgatac cccagcggac ggatgctctg gagaagaaag taatacagac
     1261 cgcgcacgat gtggagtatg cagttatccc cttaatgtat tggggagagc atggacgcga
     1321 gccagagaag gcgggcgttg tgggaacggg ctttcttatc aatgaagagg gttactttgt
     1381 aactgccgcc catgtaacgt cggtgtacga gtccaactct gctcagctaa cggcaaccat
     1441 ccgccaaaag gatgggagtg gtagtggacg atggtttgac gtcattgaga aagatgagag
     1501 acgagacttg gctctgtgca agataaaggg ctacactcca catctgccaa aatccttggt
     1561 tgctaataat cccaacgccc agactccatt cgctagtctg cgaatctcat cggaacgggt
     1621 tcaaacagga caattcatcc tcttagctgg atttcccctc ggctcatgga atccaacaag
     1681 tcaacttgga acaattgcgg ctacccaaac cgtgagccca agcgcgggaa gagttcctgc
     1741 ggggcaaaga gagcttcttc agataagcgt ttcaggaaac aagttctcgc agaggtcacc
     1801 gagggaaacc tttgcgttcc cctgcgaaat cctctgcgtc ctttgcggtt gaatcgttgg
     1861 ttcgaaatcg cgaggttgaa atccttgcag gcgtcctgag aatctatttg cgcgtttttc
     1921 gtcgtttgaa tttcagcgac gcagccttct tctcttctgc tttacagaat tcactaacca
     1981 gtccgacgaa ttgctttgga aattcctgcg gcggcaagtg cccgcagttg cgaaagacga
     2041 tcagccgcgc tttcggcatc gcatcgcgca gacgaaagcc gtcgctgagc ggaatgtgcc
     2101 catcgtcttc accccaaacg agcatcgtcg gctgacgaat caggtgcgcg tcgcgcgcga
     2161 tgcgattcgc gctccagcga cgaacggtgc gaatcatcgt gcgatgcgtg ttcgcggtcg
     2221 cgagcaaatg atggcgagct gcgagtttgt gttcgtcgag cggaagaccg attcgccggt
     2281 aaacttcttc cgtgcgcttg cgcaagatcc accgcgagcc gagaaacagc ggcgtcacga
     2341 cgtcgccgac gagcggcaga cgcaaaatgc gcagcaacaa cttcttcttt ggctcgtcat
     2401 tgctcactgc gccaatcaga accagacgat ccactcgctc agggtgatcg agcgccaacg
     2461 cggcggcgat cgctgcgcca taggaagcgc ccacgacaac ggccttctcg atcccaagtc
     2521 gatccatcaa accggcaacg gcgtgcgctt gtgattcgat tgtgtagtcg ccgtcacgcg
     2581 gcttttcgga ataaccgtaa ccgggcaggt cgggcgcaat cacgcgaaag cccgcttgcg
     2641 ccagcggcag aaacacgtcg ctccaaatca gcgtcgaaga aatgaagccg tgaatcagaa
     2701 tcattggcgg cgctttctca tcgcccgctt cctgataatg cattcgcacg ccgtcgatgg
     2761 ttgtgaacca cgaatgctcc gggtgataaa tcaggttgat gctgtcagac caacggacat
     2821 cacgcggacg tgtcagcagt ttggtagcga ccgcgccggc aactagtccc aatcctccgg
     2881 cgagcagata acgcttcttc atggcgaacg gaatcttaac gcttgagacc caaaggtgaa
     2941 agagctcaat taatcaattt gctgatctga ttcacacctc gcttcagcga ggtgaacaac
     3001 agatgctatt tatgaaatga accatttcaa tggttttgaa gccgttgaaa cggctaagcg
     3061 ctctcttgtc tcgcctctgt cacctcgctg gagcgaggtg ttaatgagac tcactcgatt
     3121 gttcgctgtt cgcgatcaca acggtcgggt gaataaattt ccgttccgtg tcgtgaaccc
     3181 cgacagcgat tagcagatac gcggcgtcgc gcattcgtac ggcctgcctg tttgaccaac
     3241 ttgaagaaac tgcgtcttca atctggagat cgattccatg acacacgcgc tttacctcgc
     3301 cgtgactcaa ctgaaccgaa ggcagatgcg cgagcgccgc gtcaggtgaa atcaaggcat
     3361 cttcgattga accggtttcc accaattcgt tcaattgatc gagcgtgatc gcgtcttgaa
     3421 tcctgaatgc gccggcgcgc gtgcgtcgca actcaacgag atgcgcgccg atgcctacgc
     3481 gttgaccgaa gtcttcagcc agcacgcgca cgtatgttcc ggccgagcaa acgacccgca
     3541 cggcgagatc gcatgtgccg tcatagttag ttttcaacag cgaaccgtcg agcgcgagcg
     3601 cttcgaactg gctgaccgtg acacgaacgg tttttcgctc aactccttcg ccgcgccgtg
     3661 cgagttcgta aagcttcttc ccgccaatct tcttcgccga atacattggc ggcgtctgtt
     3721 caatctcacc gcgcaacgaa gccaacgcag tttcgatgtc ttctttgccg atgctttgcg
     3781 tgctttgcgc ctttgcgtga gactccgact cttcattttc gatgggcgta ccggtgagat
     3841 caccggtatc tgtcgcatag cccagccgaa tcactgcttc atattccttt tccgcgccgc
     3901 tcaggaattg cgcgagccgc gtcgcgcgac caaccagcac agccaacaca cccgtcgcaa
     3961 atggatcgag cgtgccggtg tgtccgacgc gccgctcgcc gatgatcttt cgcacgcgcg
     4021 cgacca
//
LOCUS       DASZZE010000134         1622 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_313641, whole genome shotgun sequence.
ACCESSION   DASZZE010000134 DASZZE010000000
VERSION     DASZZE010000134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1622
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_313641"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(142..>1622)
                     /gene="purF"
                     /locus_tag="VHD88_02700"
     CDS             complement(142..>1622)
                     /gene="purF"
                     /locus_tag="VHD88_02700"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: protein motif:HMM:TIGR01134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004044 - amidophosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HVS20727.1"
                     /translation="KNGRQDVCAPRDAHRDAPEEIELDKFREECGVFGIHGHPEAARL
                     TYLGLYALQHRGQESCGIVTSNRRELRLERAMGHVSDAFDQARLDRLEGSSAIGHVRY
                     STAGDVSIREAQPFLVTCQHGQIAFCHNGNLPFANEERRRLEREGAIFSSTSDTEVVL
                     HGVARSQTGSVADAIPEVLSETEGAFSMLFLTPTELIAIRDPRGFRPLALGRLGEAWV
                     VASETCAFDLIDARYVRDVEPGEMIVINEEGLRSSHPLPQRPISMCIFEHVYFARPDS
                     LIYGHSVNESRHKMGQRLAIEQPADADLVVPVPDSGTVAAIGYSAQSKISLRFGLVRN
                     HYVGRTFIEPRQSIRSFGVRIKLNPVRDLIAGKRVVLIDDSIVRGTTSKKIVQMVREA
                     GAKEIHLRISCPPTISPCYYGVDTPNKADLIAAQMSVEEIRKFIGADSLGYLSLEGMM
                     EATGISPDQACVACWNERYPTRITADAETCWSREHEAVTFEG"
BASE COUNT          355 a          477 c          464 g          326 t
ORIGIN      
        1 atcgagtgtg ctccaacaag gctttgggaa tgcggacgcc gcgcgaattt ccgattctta
       61 cgatgcgagc tttcatgact acaatgtaat tacgcggttg ggttacggtc aaggcgcagg
      121 aggatggaaa tcttctgaaa atcacccttc aaaggtcacc gcctcgtgct cgcgcgacca
      181 gcacgtttcc gcgtcggcgg taatgcgcgt cggatagcgc tcgttccagc aggccacgca
      241 agcctggtcg ggactaatac ccgtggcttc catcatgcct tcgagagaga gatagccgag
      301 cgagtccgcg ccgatgaact tgcgaatttc ttcgaccgac atctgcgcgg caatcaagtc
      361 cgctttgttc ggagtatcaa cgccgtagta gcagggactg atagtcggcg ggcaactgat
      421 gcgcagatgg atctctttgg cgccggcttc gcgcaccatc tgcacgatct tttttgaggt
      481 agtgccgcgc acgatcgaat cgtctatcaa caccacgcgt ttgccggcga tcaaatcgcg
      541 caccggattg agcttgatgc gcactccgaa tgaacgaatc gactgtcgcg gctctatgaa
      601 ggtgcggccc acgtaatgat tacgcaccag gccaaaacga agactgattt tactttgcgc
      661 tgaatagcca atggccgcga cggtgcctga gtctggcacg ggcacaacca agtccgcgtc
      721 ggcaggctgt tcgatggcca ggcgctggcc catcttgtga cgcgattcgt tgaccgagtg
      781 gccatagatc agcgaatcgg ggcgcgcgaa atatacatgc tcgaaaatgc acatcgaaat
      841 cgggcgctgg ggcaaaggat gcgacgaacg caacccttct tcgttgatga cgatcatctc
      901 gcccggttcg acgtcgcgaa cgtaccgggc atcgatgaga tcgaacgcgc aagtctctga
      961 agccaccacc cacgcttcgc ccagacgacc cagcgccagc ggacgaaagc cgcgcgggtc
     1021 gcgaatcgca atcaactccg tgggcgtcag aaagagcatc gaaaacgcgc cttcagtttc
     1081 gctgagaact tccgggattg cgtcggccac cgatccggtc tgcgaacgcg cgacgccgtg
     1141 cagcacaact tcagtatccg aagtcgaaga aaatatcgcg ccctcacgct cgagtcgccg
     1201 ccgctcctcg ttcgcgaaag gaagattgcc gttgtggcag aaagctattt gtccgtgctg
     1261 gcaggtgact aagaaaggtt gtgcttcccg aattgaaacg tcgccggccg tggaataacg
     1321 cacgtgcccg atggcgctcg aaccttccag acgatcaagc cgcgcttgat cgaacgcgtc
     1381 ggaaacgtgg cccatcgcgc gttccaggcg cagctctcga cggttcgagg ttacgatgcc
     1441 gcaagactcc tggcctcgat gctgcaatgc ataaaggcca agataggtaa gacgcgcagc
     1501 ctccgggtgg ccatgaattc cgaacacgcc acactcttcg cgaaacttgt ccagctctat
     1561 ttcctcggga gcgtccctgt gagcgtccct gggagcgcag acatcttgtc tgccgttctt
     1621 ct
//
LOCUS       DASZZE010000135         1614 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_200187, whole genome shotgun sequence.
ACCESSION   DASZZE010000135 DASZZE010000000
VERSION     DASZZE010000135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1614)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1614)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1614
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200187"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(183..>1614)
                     /locus_tag="VHD88_02705"
     CDS             complement(183..>1614)
                     /locus_tag="VHD88_02705"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HVS20728.1"
                     /translation="NRLRFLSPSIDRDIAPRWSPDGRRIAFIRLFNVTDTFANDRDRF
                     QPWAIWVVDARGGEGKQVWRSGDQENDSYPGLGGADFWQWTAGDRLLFPSEKDGWAHL
                     YSISAEGGALTALTPGEFEVENVELSPDKSFVVFSTNKNDVDRRHLWRTSVNGGAPRQ
                     ITKGDGIEMHPVFFNDGQQLAFFHSTTRDPFLPFTASLDGSNMKPLAPQALPRDFPSA
                     KLVVPDQVIFKAADGWEIHGQLFKPANTSGKLPALVFMHGGPLRQMLLGWHYLYYYHN
                     SYAMNQYLASRGYMVLSVNYRSGIGYGRSFRMAQHRGARGASEYQDVVAGAKYLRERD
                     DVDKKRVGLWGGSYGGYLTALGLARNSDIFAAGVDFHGVHDWSSPVAGLRVPIDTAER
                     NRIARESSPISSVDKWKSPVLLIHGDDDRNVEFSQTVNLVRQLRTNGVYFEQLIFPDE
                     IHDFLRHQDWVHAYHASADFFDKHLK"
BASE COUNT          378 a          480 c          438 g          318 t
ORIGIN      
        1 tgaagagtgg cgtcactagt tccgttctcc actgccgata tgtgcagcat tcacccgggc
       61 atgcgccttt gtcgacgtaa tactgcggag gccgtttctg cgagtaagca ggactcgaca
      121 aaaaccagca ccaagtaatg agcagaatca ttcgattgat tgacattcag aggagccgtg
      181 attcacttca ggtgcttatc gaaaaagtct gcgctggcgt gatacgcgtg cacccaatcc
      241 tgatgccgca gaaaatcgtg tatctcatcc ggaaagatca gttgttcaaa atagactcca
      301 ttagtacgca gttgacgcac caggttcacc gtctgcgaaa actcaacgtt gcgatcgtcg
      361 tcgccgtgaa tcaacagcac cggcgatttc catttatcca ctgaagaaat tggcgaagac
      421 tcgcgcgcga ttctgtttcg ctccgccgta tcgatcggca cgcgcaaacc cgcgaccggc
      481 gaactccagt cgtgcacgcc gtgaaaatca actcccgcag cgaagatgtc cgagttgcgc
      541 gccaggccga gcgccgtcag ataaccaccg tacgatccgc cccacaaccc aacgcgtttc
      601 ttatccacgt cgtcgcgctc gcgcaggtac ttcgcgccgg ctacgacatc ctgatactcc
      661 gacgcgcccc gcgcgccgcg atgctgcgcc atgcgaaagc tgcgaccata tccaatgccg
      721 ctgcgataat tcaccgacaa aaccatgtag ccacggctgg cgagatactg attcatcgcg
      781 taagagttgt gatagtaata aagataatgc cagccgagca gcatctgacg cagcggtccc
      841 ccgtgcatga acacaagcgc cggaagtttg ccggatgtgt tcgccggctt gaacaactgg
      901 ccgtgaattt cccagccgtc ggcggctttg aaaatcacct gatcgggaac cacgagcttc
      961 gcggaaggaa aatcgcgcgg caaagcctgg ggcgccagcg gtttcatgtt cgaaccatcg
     1021 agcgaagccg taaacggcag aaaaggatca cgcgtagtcg agtgaaagaa cgccaattgc
     1081 tgtccgtcgt tgaaaaatac gggatgcatt tcgatgccgt cgccttttgt gatctgccgt
     1141 ggtgcgccgc cgttgacgct cgtgcgccag agatggcggc gatcgacgtc attcttgttc
     1201 gtcgagaaga ccacgaagga tttgtcaggc gagagctcga cgttttcaac ttcaaattcg
     1261 cccggagtca acgcggtcag cgcgccgcct tccgccgaga tcgaataaag gtgcgcccag
     1321 ccatctttct cggacggaaa cagcaaacga tcgccagccg tccactgcca gaaatctgcg
     1381 cctcccagcc cgggatagga atcgttctcc tgatcgccgg aacgccagac ctgtttgcct
     1441 tcgccgccgc gcgcgtcgac gacccagatg gcccacggtt gaaaacgatc tcggtcgttc
     1501 gcaaacgtgt ccgtcacatt gaacaatcga atgaaggcga tgcgccggcc gtcgggcgac
     1561 cagcgcggtg cgatatcgcg atcgatactg ggagatagaa agcgcagccg attc
//
LOCUS       DASZZE010000136         4194 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_4185, whole genome shotgun sequence.
ACCESSION   DASZZE010000136 DASZZE010000000
VERSION     DASZZE010000136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4194)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4194)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4194
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4185"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..251)
                     /locus_tag="VHD88_02710"
     CDS             complement(<1..251)
                     /locus_tag="VHD88_02710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20729.1"
                     /translation="MKFNHTKSLSIAFLILLALPVLAGAQRTKPRLRRPAPRVVAPVL
                     VPVGTNLKVRLNDTLSSKESRAGDKFTAAVLDPVRFNEAT"
     gene            complement(331..963)
                     /locus_tag="VHD88_02715"
     CDS             complement(331..963)
                     /locus_tag="VHD88_02715"
                     /inference="COORDINATES: protein motif:HMM:NF005012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B family
                     protein"
                     /protein_id="HVS20730.1"
                     /translation="MAEHNEGFVLTTVDSITNFVRRTVAAKAIDMAAPVVNWARKSAI
                     WPMTFGLACCAIEMMATGAGRFDIDRFGAGVFRPSPRQSDLIIIAGTVTLKMGPVIRR
                     IYDQMPEPKWVIAMGACASTGGPFDSYSTMQGVDRTIPVDVYIPGCPPRPEALLYGLM
                     RLQDIIMREAPSAYIFESDGTVHRQRHFDSDEQYQLSQSTEANELVAAAK"
     gene            complement(1085..1501)
                     /gene="ndhC"
                     /locus_tag="VHD88_02720"
     CDS             complement(1085..1501)
                     /gene="ndhC"
                     /locus_tag="VHD88_02720"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF012717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HVS20731.1"
                     /translation="MLLLQATTTTAHNVGGPGTAYLPVMVFFVFAIVFPVLPLVLGRF
                     LRPWKYQKDKMRPYECGIDPETGAHDRFTVRYYIVAMLFLIFDVETIFLLPWAIIFMG
                     YDFSFTKFALVEMFVFIGILVVGYYYAWRKGALEWV"
     gene            complement(1646..2383)
                     /locus_tag="VHD88_02725"
     CDS             complement(1646..2383)
                     /locus_tag="VHD88_02725"
                     /inference="COORDINATES: protein motif:HMM:NF020965.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyloxyacyl hydrolase"
                     /protein_id="HVS20732.1"
                     /translation="MPNRPHDKRRTRWLSVIANRVIQSVIFSCSLILLFASCVLAQAP
                     DDSASRNAGGGAQSKTEGIQKRWNEFGFWGGMSFDATTLIGKTPDAKFGNVGLRYGRV
                     LAASKTIAFEWTIEPVPLSILSNQRSSQCLIQREASLSLKRARASTAGAPRRSVKFNF
                     RRNRRVQPFGQTTGGFLYFNEDVPVSGAKRFNFTFDLAGGVQIVNSNRSAFTIGYKYE
                     HISNGYRSSINPGVDVQMIYAGFFIFR"
     gene            complement(2539..3036)
                     /locus_tag="VHD88_02730"
     CDS             complement(2539..3036)
                     /locus_tag="VHD88_02730"
                     /inference="COORDINATES: protein motif:HMM:NF013183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MogA/MoaB family molybdenum cofactor
                     biosynthesis protein"
                     /protein_id="HVS20733.1"
                     /translation="MPTQIHAVVITASDACSLGEREDKSGEALVELLTKIGAHIVAKE
                     ILADDLEPLSDKLRAYADRSDVNLIATTGGTGFGPRDNTPEATLRVIEREAPGLAEAM
                     RIETLKQTPMAMISRGVCGIRSGTLIVNLPGSPKAVRESFAVIKPVLNHAVSILAGQP
                     HSPAN"
     gene            complement(3116..3526)
                     /locus_tag="VHD88_02735"
     CDS             complement(3116..3526)
                     /locus_tag="VHD88_02735"
                     /inference="COORDINATES: protein motif:HMM:NF024773.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HVS20734.1"
                     /translation="MNINSPEAIARILDECRTIAVVGLSSKPTRPSHGVAAYMQRTGY
                     RVIPVNPNETEVLGEKAHALLADVPEKIDLVDVFRRPEEAGAAVDQAIAIGAKAVWLQ
                     EGLIDHAAAQRALDAGLLVVMDRCWLKEHARRRM"
     gene            complement(3599..>4194)
                     /locus_tag="VHD88_02740"
     CDS             complement(3599..>4194)
                     /locus_tag="VHD88_02740"
                     /inference="COORDINATES: protein motif:HMM:NF014225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20735.1"
                     /translation="LTVDRFFIKSPVFPFAKFPGVDPVLSPEMHSTGEVMGIGESFGE
                     AYAKAMTGAGLKLPERGTAFISVNEADKGQAVLLARRLVRLGFDLMATLGTAARLREV
                     GLNVDNVFKVNEGRPNIVDHIKQNEIALIINTPLGRASHYDEQAIRRAALQYNVPCVT
                     TMTGAQALVEALASRANVKEIGVYALQDLHAVSASAR"
BASE COUNT          966 a         1168 c         1134 g          926 t
ORIGIN      
        1 gtggcttcgt tgaagcgaac cggatcgagc acggcggcgg tgaacttgtc gcccgcgcgc
       61 gattccttgc tcgacagcgt gtcgttcaaa cgaactttca gattcgttcc gacgggaacg
      121 agcacgggcg cgacgacgcg aggcgcgggc cggcgcaagc gcggctttgt cctttgcgcg
      181 ccggcaagca ctggcagcgc gagcaggatc agaaaagcga ttgagagact ctttgtgtga
      241 ttgaatttca ttaggctcct cctgattatt aagaatggca tttcaaagaa gaaaagggga
      301 gaagcgccgt ttccgaattc ttgactcgct tcacttcgcg gctgctacca gttcattagc
      361 ctcagtcgat tgggagagtt ggtactgctc gtcgctatcg aaatgtcgtt gacgatgcac
      421 agtgccgtct gattcaaaga tgtaggccga cggcgcttcg cgcatgatga tgtcctgcaa
      481 acgcatcagg ccgtagagca aagcttcggg tcgcggaggg cagccgggaa tgtagacgtc
      541 gacggggatc gtacgatcga caccctgcat cgttgaatag gaatcgaacg gtccgccggt
      601 cgaagcgcac gcgcccatcg caattaccca tttcggttcg ggcatctgat cgtaaattct
      661 acgaatgacc gggcccatct tcaacgttac cgtgccggca atgatgatga gatcactctg
      721 tcgcggactg ggccgaaaca cgccggcgcc gaagcgatcg atatcgaaac gtcctgcgcc
      781 cgtagccatc atctcaatcg cgcaacaggc cagaccaaac gtcatcggcc agattgccga
      841 cttgcgcgcc cagttcacca ctggcgccgc catatcgatt gccttagcgg cgaccgtgcg
      901 gcgcacgaaa ttcgtgatcg aatcgaccgt ggttaagaca aatccttcgt tgtgttcagc
      961 cataactgat ttcgaatttc ggattgcgaa ttgcgaattg cgaaattgcc attcaacaga
     1021 aatcggaagc tcaaccgtcg acgtccgata aattcgcaat ccgaaatccg caattcgaaa
     1081 ttcctcagac ccactcaagc gcgcctttgc gccacgcgta gtagtaaccg acaaccagaa
     1141 ttccgatgaa gacgaacatt tcgacgagcg caaactttgt gaacgagaaa tcgtagccca
     1201 tgaagatgat cgcccacggc aacagaaaga tagtttccac gtcgaagatc aaaaacagca
     1261 tcgcgacgat gtaatagcgc accgtgaagc gatcgtgcgc gccggtctcg ggatcgatgc
     1321 cgcactcgta cggccgcatc ttgtctttct ggtatttcca cggccgtagg aagcggccaa
     1381 ggaccagggg caacaccgga aagacaatcg caaaaacaaa aaagaccatc accggcaaat
     1441 acgcggtccc cggtcccccg acgttgtgcg cagtcgttgt cgttgcttga agcagcagca
     1501 ttacgtttca ggaagtgctt gctaattatc gcgaacgcga aaatattaag tgccgcgcga
     1561 gatcaatgtc aatgaagatt tgcgaatcgt ggtttggagt gcgccgactt gtcggcactt
     1621 tggaatgtct gagggctccc gtgtttcacc taaagataaa aaagcccgca tagatcatct
     1681 gcacatcaac gccgggattt atcgatgatc gataaccatt ggagatgtgt tcgtacttgt
     1741 agccgatcgt gaaagcgctg cggttgctgt tgacgatttg aacgccgccg gccaagtcaa
     1801 aagtgaagtt gaagcgctta gcgccggata caggtacgtc ttcgttgaag tagagaaagc
     1861 ctcccgtggt ttgaccgaag ggttgaacgc gacgattgcg gcgaaagttg aactttaccg
     1921 atcggcgcgg tgccccagcc gtagacgctc ttgcgcgctt cagtgaaagt gaggcctccc
     1981 gctggattag gcactgtgac gaacgctgat ttgaaagtat cgaaagagga acaggctcta
     2041 tcgtccattc aaaggcgatc gtcttgctgg ccgccagcac ccgcccgtat cgcaaaccaa
     2101 catttccaaa tttcgcgtcc ggcgtcttgc cgatcaaggt cgtcgcgtcg aatgacattc
     2161 caccccagaa cccgaactcg ttccaacgtt tctgaattcc ctcagtcttt gattgagcac
     2221 cgccgcctgc attacgtgaa gcagaatcgt caggagcttg cgccaacacg caggacgcaa
     2281 aaagcaatat tagcgagcac gagaatatga cagattgaat aactctgttc gcgattacac
     2341 tcaaccagcg agttcgccgc ttgtcgtgag gacgatttgg cattgttagc tccttaaatg
     2401 aaagatatgg ttttcgacga ggcacggcga attcaagagc aagagtagtt aagcccgaac
     2461 cgttcagctt agcatcggcc gcattcttta tgaatgctcg ttatctgtca atcaaaacta
     2521 acgttgcttc cggcggtgtt aattcgcagg actgtgcggc tgtccggcaa gtatggagac
     2581 agcgtgattc aagaccggtt tgataaccgc gaaactttca cgcacagctt tcggcgagcc
     2641 gggaagattg acgatcagcg ttcccgatcg aatgccgcac acgccgcgcg agatcatggc
     2701 catcggcgtt tgtttgagag tttcgatgcg catcgcttcg gccaaaccag gcgcttcgcg
     2761 ttcgatgaca cgcaacgtcg cttcgggcgt gttatcgcgc ggaccgaacc cagtcccgcc
     2821 agtggttgcg atcaggttca cgtcggatcg atcagcgtag gcgcgcagct tatcggacag
     2881 cggctcgaga tcgtcggcga gtatttcttt ggcaacgatg tgagcgccaa tcttcgtcag
     2941 cagttctact aacgcttcgc ccgacttgtc ctcgcgctcg ccaagcgagc aggcgtcgct
     3001 ggcggtgatt acgactgcat gaatctgggt cggcattcga ttgattcccg ccgggcgatt
     3061 gtaggggcgg acctaagtgt ccgcccaacg cgagggcgca cacgcaggtg cgccgctaca
     3121 tcctccttcg cgcgtgttcc ttcagccagc aacgatccat tacgactaac aatccggcat
     3181 cgagcgcacg ctgggcggcg gcgtgatcga tcaggccctc ctgcaaccaa accgcctttg
     3241 cgccgatcgc tatcgcttga tcgacggcag cgccggcttc ctctggtctt ctaaacacgt
     3301 ccaccagatc gatcttctca ggtacatcgg caagcaacgc atgggctttt tcaccgagca
     3361 cttcagtttc atttggattc acaggaatga ctcgatagcc agttcgctgc atgtatgcgg
     3421 caacgccatg cgaaggtctc gtcggctttg aagacaaacc gacgaccgca atcgtgcggc
     3481 attcgtctaa gattctcgca atagcttcag ggctgttgat gttcatcttt ctgccttctc
     3541 tgcgtcctct gtggttctaa gctactattc accgcggaga tacggagagc acggagtctt
     3601 aacgcgccga agcactcaca gcatgcaagt cttgtagcgc gtacactcca atctctttca
     3661 cattcgctcg cgaagccaac gcttcgacca gagcctgcgc cccggtcatc gtggttacgc
     3721 acgggacatt gtattgcaga gccgcgcggc gaattgcttg ttcgtcataa tgcgaggctc
     3781 ggcccaacgg cgtgttgatg atcaaagcga tctcgttttg cttaatatga tcgacgatgt
     3841 tcggccgtcc ttcatttacc ttgaagacgt tgtcaacgtt taatccaact tcgcgcagac
     3901 gcgccgcggt gccgagcgtc gccatcaagt caaagccgag tcgcacaagt cgtcgcgcga
     3961 gcaaaaccgc ctgacctttg tcagcttcgt tcacgctgat gaacgcagtg ccgcgttcgg
     4021 gaagcttcag gccggcgccc gtcattgctt tggcgtaagc ttcgccgaaa ctctcgccga
     4081 tgcccatcac ttcgccggtc gaatgcatct ccggactcaa caccggatcg acgccgggaa
     4141 attttgcgaa ggggaagacc ggcgacttga tgaagaaacg atcgacagtt aact
//
LOCUS       DASZZE010000137         3573 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_4199, whole genome shotgun sequence.
ACCESSION   DASZZE010000137 DASZZE010000000
VERSION     DASZZE010000137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3573
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4199"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..862
                     /locus_tag="VHD88_02745"
     CDS             <1..862
                     /locus_tag="VHD88_02745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20736.1"
                     /translation="FFVLWWMLQGEENPWIPAGLAASVVMLVAAAARGVVMRRAWTRY
                     VLEQDPHQRRVHTVGGRSSRLVNMQSTGVQSATLRALQKQSAEANANDSVPEAHREVY
                     QLCNDYLASADEALRSPGLSAENRVSLRAGQERVRALQKHHLLNWARGTALSLTREAQ
                     QRVRLYEKVETANRALDCIDSALKVYPNEEELNQSAGAVREFITSSRVAHWVELAERA
                     AFKGYYRRAIDCYRDALFYLVRDNPDPDREAAARRITREIELLRARVATKKAVSSPER
                     SSSSEDRERS"
     gene            1234..2193
                     /locus_tag="VHD88_02750"
     CDS             1234..2193
                     /locus_tag="VHD88_02750"
                     /inference="COORDINATES: protein motif:HMM:NF014606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_function: GO:0015159 - polysaccharide transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis/export family
                     protein"
                     /protein_id="HVS20737.1"
                     /translation="MAQEQSPGPVAGQTSSSIDTQGVRNYLLGPGDILDVRVFGQPDL
                     NALVEIDGDGNISSLPFLETPIRAQCRTEKEVQKAIATAYSTYLKSPQVSVRIAERKS
                     RQPATIYGAVRNPMQVTMMRRVRMHELIAKSGGVSERASGLIQLMHTEPEMCPEPGSV
                     IQKTAAASQTNAQFEVYKLRDLNMGKEEADPYIRPGDIVIVAEGEPVYVTGAVIAPRE
                     VFMKEKLTLTRAIAMAGGPQRLAKTNEVHIYRQNDEKNGEQDLKYDYDAIRKGKEPDV
                     LLKANDVIAVGNSGTFSRKGFAELLMNGFRATVPLATQRAIIY"
     gene            2273..2569
                     /locus_tag="VHD88_02755"
     CDS             2273..2569
                     /locus_tag="VHD88_02755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20738.1"
                     /translation="MSQRIKAKTAKRRRGFTYLWIFGLAVLVFVLIYFEQTALLYILA
                     TLGVTALLIVVAVADLGRSDRTSEASAQLSDAQARGAGISSRVPAGTPKEKSRT"
     gene            complement(2627..3217)
                     /locus_tag="VHD88_02760"
     CDS             complement(2627..3217)
                     /locus_tag="VHD88_02760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20739.1"
                     /translation="MKEAALGFRAKSGWAMAVLLSGPSSSPKVIDRRRVELADPAVPE
                     STQPFHAGLDLPKAAGAKAVAHLVRCVERSSERAIAELIKLYRAGGYRIVGAGIVVGS
                     TVDPQTIKNDHIRAHAEEGRLFCVVIEHALKQLRLKFSVTREKELMPTAAKALGIPER
                     KLRAELTAMGKAVDGSWRAEEKTATLAAWMALARSE"
     gene            complement(3223..>3573)
                     /locus_tag="VHD88_02765"
     CDS             complement(3223..>3573)
                     /locus_tag="VHD88_02765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20740.1"
                     /translation="YRIDTADRSIVISGDTRPSEALVKVARGVDILIHEVYSASRLAP
                     EDRPAGKDWPRYCREYHTSDVELGRLAARIQPKVLILDHIIRMGASDEELLAGVRAGG
                     YSGKAVIGKDLERY"
BASE COUNT          778 a          959 c         1036 g          800 t
ORIGIN      
        1 gtttttcgtg ctctggtgga tgctccaggg tgaagagaac ccgtggatac cagcgggtct
       61 ggccgcgagt gtggtgatgt tggtcgcggc ggcagctcgc ggagtcgtta tgcgtcgcgc
      121 ctggacgcgg tacgttttgg agcaagaccc tcaccaacgg cgcgttcaca cagttggcgg
      181 gcgatcttcg aggttagtga atatgcagtc gacaggcgtg caaagcgcaa ccttgcgcgc
      241 gctgcaaaag caatcggctg aagctaacgc caacgattct gttcccgaag ctcatcgcga
      301 agtctatcag ttgtgcaacg actatctcgc gagcgctgac gaagctttgc gatcgcccgg
      361 tttgtcggca gagaatcgag tgagtttgcg ggcgggacag gaacgcgtgc gtgctctgca
      421 aaagcatcat ctgcttaatt gggcgcgcgg caccgcgctc tccctgacgc gcgaagcaca
      481 gcaacgcgtt cgactctatg agaaagtcga gacggccaat cgcgcgctcg attgcatcga
      541 ttccgcgctg aaggtctatc cgaacgagga agaactcaat caatcggctg gcgctgtgcg
      601 tgaattcatt acatcaagca gggtggcgca ttgggttgaa ctcgccgagc gcgcagcttt
      661 caaaggctat taccggcgcg ccatcgattg ttatcgcgac gcgttgtttt atctagtgcg
      721 cgacaatccc gacccagacc gcgaagccgc ggcgaggcga attacgcgag agatcgagtt
      781 gttaagagcc cgcgtcgcta ccaagaaagc cgtcagctcg ccggagcgca gctcttcgag
      841 tgaagacaga gagcgatcct gacagccggc gcggtcttga tcgccggaca gtaatactgc
      901 tgatcaaaga taaggagcgg aagtgtttcg gcgaaagtgc ccaaagtgcg gcagcaccaa
      961 gataaacaaa ggctaccggc acgtgccgtg gtttctgcgt ttgtttggca tctacagtct
     1021 tttatgcgat cattgcaact ggttatttac tggattcgga tttccgggca agccgaggag
     1081 gcgaggaagt cgccgtcatt aattggggcc agcggcagca cgtaacacgc cctaactggt
     1141 ttgagacggc tcctaattct taaaggtgtg gcgatgaaca agactcggat tctcttcacg
     1201 ttgttggtta gcgcggtagc ggtcctttcg gtgttggcgc aggagcaatc cccgggtccg
     1261 gtcgcgggcc agacttcttc ttcaatagac actcaagggg tgaggaatta tctgctgggc
     1321 ccgggtgaca ttctggacgt tcgcgttttt ggccaaccgg atttgaacgc tttagtagaa
     1381 attgatgggg acggcaacat ttcatcactt cctttcctgg aaacgccgat tcgcgctcaa
     1441 tgtcgcaccg aaaaggaagt gcagaaagct attgccacgg cctactcgac ttatttgaaa
     1501 agcccgcagg tgagcgtgcg catcgctgag cgcaagagcc ggcaacccgc taccatttat
     1561 ggcgccgtgc gcaatccgat gcaagtcacg atgatgcggc gcgtgcggat gcacgagttg
     1621 atcgcaaaat ctggcggagt tagcgaaagg gccagcggtt tgatccagtt gatgcacacg
     1681 gaaccagaga tgtgtccaga gccggggtca gtgattcaaa agacggcggc cgcttctcaa
     1741 acgaacgctc agtttgaagt ttacaagctc cgggatctga atatgggaaa agaggaagcc
     1801 gacccttata ttcgcccggg cgatattgtt atcgtggccg aaggggaacc tgtttacgtc
     1861 acgggcgcag tgattgcgcc acgtgaagtc tttatgaaag agaagctcac gctgacgcga
     1921 gcaatagcaa tggctggcgg gccgcaaagg ctggcaaaga ctaatgaggt tcatatctat
     1981 cgccagaatg atgagaagaa cggtgagcaa gatttaaagt acgattacga cgctatcagg
     2041 aagggaaagg aaccggacgt attgctgaag gccaatgacg ttatcgcggt cggtaatagc
     2101 ggaacctttt caagaaaggg ctttgctgag ctacttatga acgggtttcg tgcgaccgtt
     2161 cctctagcta cacagagagc tatcatctat tgaaatcatt cctcctcgag aaacgtggcc
     2221 gggaatcatt ttgccgccag ccttttcgtt tgttgtgtta ccggaagcga taatgagtca
     2281 gagaataaaa gcgaagaccg ccaagaggcg tcgcggtttc acttacttgt ggatttttgg
     2341 tctggccgtt ttggtttttg tgctgatcta ttttgagcag acggcattgc tctacatcct
     2401 tgccacgctc ggtgtcacag ccttgctaat cgtcgtggcg gtggccgacc tcgggcgcag
     2461 cgatcgaact tcagaggcgt ctgctcaact ctcggacgct caggcgcgcg gcgcgggaat
     2521 tagttcccgc gttccagccg gcacgccaaa ggaaaaatcc cggacctgag gatgctcctt
     2581 aaatccacgc gtgaccgtgc gcgaagcttt ctgaagtcgg actctcttat tctgatcgcg
     2641 ccaacgccat ccacgccgct agagttgccg tcttctcttc cgcgcgccac gatccgtcaa
     2701 ctgcttttcc cattgccgtc agctcggctc tgagttttcg ttcgggaatg ccaagcgctt
     2761 tcgccgctgt cggcatcaac tctttttcac gcgtgactga gaatttcaaa cgcaactgct
     2821 tgagcgcgtg ctctatcacc acgcaaaata gccggccttc ttcggcgtgt gcgcgtatgt
     2881 gatcgttctt gatcgtttgc ggatcgacag tgctgccgac gacgattcct gcgcccacga
     2941 tgcgataccc gccggcgcga taaagcttga tcagttccgc gatggcgcgc tctgaggatc
     3001 gctcgacgca tctgaccagg tgcgctactg ctttcgcacc ggcagccttc ggaagatcaa
     3061 gtccggcgtg aaacggttga gttgattctg gaactgctgg gtcggcaagc tcaactcggc
     3121 gacggtcaat gactttgggt gaggacgacg ggccagagag gagcacggcc atcgcccagc
     3181 cagacttcgc gcgaaaaccc agcgccgctt ccttcatttt tctcaatacc tttccaggtc
     3241 ttttccgatc acagctttcc ccgaatagcc tcctgcgcgc acgcccgcga gcagttcttc
     3301 atcgctcgcg cccatgcgaa tgatgtggtc gaggataagc acctttggct gaatgcgcgc
     3361 agccaacctt ccaagttcca catccgaagt atgatactcg cgacaatagc gcggccagtc
     3421 tttgccagcc gggcggtctt cgggcgccag tcgagacgca gagtaaacct cgtgaatcag
     3481 aatgtccacg ccgcgcgcaa ctttgaccag cgcttcgctt ggccgcgtgt ctccggaaat
     3541 cactatcgag cgatcggcgg tatcgatgcg ata
//
LOCUS       DASZZE010000138         7502 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_20817, whole genome shotgun sequence.
ACCESSION   DASZZE010000138 DASZZE010000000
VERSION     DASZZE010000138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7502
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20817"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..728
                     /locus_tag="VHD88_02770"
     CDS             <1..728
                     /locus_tag="VHD88_02770"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HVS20741.1"
                     /translation="NDKSALQTDGLLIADNSRPTTIKTRIIAQHQMVVRADREHRAPV
                     DAQTEDRIIATVKAAITNAQALVVSDYDKGVVTPRILSEVLPAAYGRMPVLIDPKIRN
                     FDSYRPATLVTPNHHEALRLANLEEDSDGALQTAAQMIRTRLGCDAVLITRGDRGMML
                     FEGDRDPVHVETAAREVYDVTGAGDTVIATLAAALAAGASMTEAAVLANHAAGIVVGK
                     LGTATASAEEVIASFESSSIQKS"
     gene            1012..2667
                     /gene="dacB"
                     /locus_tag="VHD88_02775"
     CDS             1012..2667
                     /gene="dacB"
                     /locus_tag="VHD88_02775"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: protein motif:HMM:NF014200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004175 - endopeptidase activity [Evidence
                     IEA];
                     GO_function: GO:0009002 - serine-type D-Ala-D-Ala
                     carboxypeptidase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine
                     carboxypeptidase/D-alanyl-D-alanine-endopeptidase"
                     /protein_id="HVS20742.1"
                     /translation="MNPEARRLSFALSVVFVLALSIVQPPSFAQQQRDRRVATDPTPT
                     PTPAPAGSRSIAPAPNPPRTLSELQSRIEEIVRQPALEPGFFAVKIVSLDTGDVIYEQ
                     NANKFVRPASNMKLYTVAAALDRLTPDYHFMTSVYAKEKADKGTIKGDLIVYGRGDPS
                     IAARFNNGDYFKGINDLADRITTAGVKRIKGDLVGDESYFNGAPLGSGWEWEDLQWSY
                     GAQVSALTVNDNAIDLTVKPGEKVGMPCVVTTGPPATSFMTITNHATTSARGSKSDLQ
                     LYRGLGANTLEITGSVPIGDNGFTGSVAIPDPALAFVTMLRDALTKRGVKIDGRLRTI
                     DARSGASIVSNPLIVSAPATNVSPRPLPFEIASMQSPAFSLIAANTLKPSQNLYTEII
                     LRTLGKMTSTNPGQTNEDDGLIVVRNLLREATASESDLALNDGSGLSRNDMITANATV
                     QLLTYMSKHRYFAQFRDALPIAGVDGTLRTRMRGTPAEGNLRAKTGTLSSVASLSGYV
                     TTAAGEHLVFSMMLNNYPDARTLRRDSIDAIGILLASFAGKSQ"
     gene            2701..3564
                     /gene="dapF"
                     /locus_tag="VHD88_02780"
     CDS             2701..3564
                     /gene="dapF"
                     /locus_tag="VHD88_02780"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR00652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008837 - diaminopimelate epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HVS20743.1"
                     /translation="MPPRFTKFHGYGNDYLVFEAEQLAGIGDLGQFAKRVCNRHYGVG
                     ADGIAVAERSENNASDFSVRIFNPDGSEASMSGNGTRCTAAYLFWHKLWSNDQLRLQT
                     RNGVKRYLLRERLDAGAFLFQSELGQPRFDTASIPMLTDEPRDRVLDYPLQVGDETLR
                     VTALQMGNPNCCIFVDDFRSVDWRRLGPLIEHHPQFPERTNVIFIRVRDRGNIEERLW
                     ERGVGETESSGTCSCAAVVASVINEKTDRRVKVHAPGGVLPIEWRDDGEAVLTGRADL
                     VYSGEWLQESH"
     gene            3752..4996
                     /locus_tag="VHD88_02785"
     CDS             3752..4996
                     /locus_tag="VHD88_02785"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HVS20744.1"
                     /translation="MLTACGAKVVKEAPAEVPVEKPKPPSAVPMWLGNPARNFYGTGP
                     LPKSLKVIWDFKTGSTRGRLHPDPWGGSGWPGQPAVVGDRVYYQSNDSYVYCLNRNDA
                     SVIWKFKTTDCVKSSPAVVGDRLVVGNLDHYVYCLNTNDGSLVWKYQTGFETDSSSSI
                     VGDRVYIGGEDHFYYCFDLKDGRVIFKQQLGGSVEGGTTVVDDRIYVDTEAGDLFCLN
                     REDGSIIWKARIGADSNSTPAVVNGFVYTAAEDGIVRCSKQDTGEPVWTYKAEGGLNQ
                     RTKEKNGFWASATVSNGRVFIGCNNGYMYCLSADKGELIWKHLMRAAVWGTAPAVDGR
                     LVFGDKSGYVYILSADNGDLVSELKIGDNVDATPAVLDGRIYVGAFNGKFYCLGEDEA
                     ASKEAVGTQPSAVSQSPSNPSR"
     gene            5020..5649
                     /locus_tag="VHD88_02790"
     CDS             5020..5649
                     /locus_tag="VHD88_02790"
                     /inference="COORDINATES: protein motif:HMM:NF012345.4"
                     /note="Members of this family of hydrolases with an active
                     site Cys residue belong to MEROPS family C26; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HVS20745.1"
                     /translation="MLLLIDNTIDGQGSSPREIRRALERLQPDMRIVVESFHDISPEL
                     VKSLSPSHIVLSGQSHPWDHYSSESLSGVFHVIRNAPQPILGVCGGQQQMALAFGAPV
                     GLIERLAPGEGYEGAFRERGFCAVELESDPDNAIFAGLPKQITVWESHCDEVKALPAD
                     FFCTAKNEVSQIQTMQHTSRPLFGVQFHPELFDEEHQHGRTILENFLSL"
     gene            complement(5827..6168)
                     /locus_tag="VHD88_02795"
                     /pseudo
     CDS             complement(5827..6168)
                     /locus_tag="VHD88_02795"
                     /inference="COORDINATES: protein motif:HMM:NF012550.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase family protein"
     gene            6204..6593
                     /locus_tag="VHD88_02800"
     CDS             6204..6593
                     /locus_tag="VHD88_02800"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HVS20746.1"
                     /translation="MVYHPLAGKKIVSVRELCAEAFIAHNVESPYRERVIKTFERHRT
                     PLNISMEMPTLEAIKRLVEKGLGVALIPRLAAQTEIARRQLAGLTVREMRLERRLHLI
                     YRRGASLSHAAKAFLRVARGISVKAER"
     gene            complement(6710..>7502)
                     /locus_tag="VHD88_02805"
     CDS             complement(6710..>7502)
                     /locus_tag="VHD88_02805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20747.1"
                     /translation="SSSVQEAALQQQAALFSESDLVRFFHLLAETESSLKDAANPRYQ
                     LEVGLVKLMEMRRLALLGELVARIDALENALRTGRPPSERKTSQPAPVSGALGTGATR
                     AATSADSAKSAVANPSEGPQAIEDSIVGASSKTSGSVIDQIKAALEKKRRRLLIAALD
                     GAQRAEIEGDELLIEFAPEAKHYRDTLAKTESVKVLREMCHEVCGREIGIRFAIKESD
                     ENEALSPDEETQRAKRQARQAAAQNPTVQQVLRAFGGEIVDVKMQ"
BASE COUNT         1594 a         2074 c         2186 g         1648 t
ORIGIN      
        1 taaacgacaa gagcgctttg caaacggatg gtctattgat cgcagacaat tcgcggccta
       61 cgacaatcaa gacgcgcatc attgcgcagc atcagatggt cgtgcgcgcc gaccgcgaac
      121 accgcgcgcc ggttgatgcg caaacggaag atcgcatcat cgcgactgtg aaagctgcga
      181 tcacaaacgc gcaggctttg gtcgtctcgg attacgacaa aggcgtcgtc acgccgcgca
      241 tcttatccga agttttgccc gccgcgtacg gacgcatgcc cgtgctgatc gatccgaaga
      301 ttcgtaactt cgattcatat cgtccagcga cgctggtcac gccgaatcat catgaagctt
      361 tgcgtctggc gaatctcgaa gaagattctg acggtgcttt gcaaaccgcg gcgcaaatga
      421 ttcggactcg actggggtgc gatgccgtgc tgatcacgcg cggcgatcgc ggcatgatgc
      481 tgttcgaagg cgatcgcgat ccggtgcacg ttgaaaccgc agcccgcgag gtgtacgacg
      541 tgaccggcgc aggcgatacg gttatcgcga cgctcgccgc agcgctcgcc gccggcgcgt
      601 cgatgaccga agctgccgtg ctggcaaacc atgccgccgg aattgtcgtc gggaaacttg
      661 ggacggcaac ggcgagcgct gaagaggtga tcgcttcgtt tgagtcgtcg tcgattcaga
      721 agagttgact tggcgggaag gcgtcaacga gtcggcgtag ccgacggcag agtgtagccc
      781 cgtacggagc gaagcggagt gcggggtcag caatcaaaac aagaaccaaa gcctgcttta
      841 gcaggcggca gcgggttcgc cttccttctg tcatccgcta aagcaggcta gttgagtctt
      901 tttatcggcg ataccccagg ttccgcttcg ctttacctgg ggctacattc tgccgcttgc
      961 ttacgcaagc tggttgtgag gtctcatctc agcttgatcg gaataccaat catgaaccct
     1021 gaggctcgac ggttatcgtt tgctctctct gttgtctttg tactcgcgtt gtcgattgtt
     1081 cagccgccta gcttcgctca acaacaacgc gatcgtcgag tggcgacgga cccaacgccg
     1141 acacccactc ctgcgcccgc aggctcacgc tcgattgcgc cagcgccgaa cccgccgcgc
     1201 acgctctcgg agttgcagtc gcggattgaa gagattgttc gacagccggc gctggaacca
     1261 ggcttcttcg ccgtgaagat cgtgtcgctc gacacaggcg acgtcatcta tgagcagaac
     1321 gcgaacaaat tcgtgcggcc cgcgtcaaac atgaaacttt acacggttgc ggcggcgctc
     1381 gatcggctca cgcctgacta tcacttcatg acttcggttt acgccaagga aaaggcggat
     1441 aagggcacga tcaagggcga tctgatcgtg tacggtcgcg gcgatccttc tattgccgcg
     1501 cgtttcaaca acggcgatta cttcaaaggc atcaacgatc tcgccgatcg gatcacgacc
     1561 gccggagtga aacgcatcaa aggcgatctg gtcggcgacg agagttattt caacggcgcg
     1621 ccgctcggca gcggctggga gtgggaagac ttacagtggt cttacggcgc gcaagtcagc
     1681 gcgctgaccg tcaacgacaa cgcgatcgat ctgaccgtga agccgggcga aaaagttggc
     1741 atgccttgcg ttgtcactac cggcccgcca gcaacctcgt tcatgacgat tacgaatcac
     1801 gctacgactt cggcgcgcgg atcgaaaagc gatctgcaac tctatcgcgg gctcggcgcg
     1861 aatactctgg agatcacggg cagcgtgccg atcggtgaca acggattcac tggcagcgtc
     1921 gcgattccag atcccgcgct ggcatttgtg acgatgttgc gagatgcgct gacaaaacgt
     1981 ggcgtgaaga ttgatgggcg gttgcgcacg attgatgcgc gttctggcgc gagcatcgtt
     2041 tccaatccat tgatcgtttc ggctccggca acgaacgtct cgccgcggcc actgccgttt
     2101 gagatcgcca gcatgcaatc gccggctttc agcttgattg cggcgaacac gctgaaaccg
     2161 agtcaaaacc tttacaccga gatcatcttg cggacactcg gcaagatgac cagcaccaat
     2221 cccggtcaaa cgaacgaaga tgatggcctg atagtcgtaa ggaaccttct ccgagaggcc
     2281 accgccagtg aaagcgatct cgccctgaat gacggctccg gtctttctcg caacgacatg
     2341 atcacggcga atgccacggt gcagttgctc acttacatgt caaagcatcg ctacttcgca
     2401 cagtttcgcg atgcgctgcc gattgccggc gtggacggca cgctgcgcac gcgcatgcgg
     2461 ggcacgcctg ccgaaggcaa cctgcgcgca aagaccggca cactcagctc cgtcgcgtca
     2521 ctgtccggtt atgtcacgac cgcggcgggc gagcatctgg ttttttccat gatgctcaac
     2581 aattatcccg atgcgcgcac gttgcgccgt gattcgatcg acgcgatcgg gatcctgctg
     2641 gcgtcgtttg cgggaaagtc gcagtagctc cgcgcattta caacgcttaa gtcattaagg
     2701 atgcctccac ggtttacgaa atttcacggc tacggcaacg attacctcgt tttcgaagca
     2761 gagcagcttg ccggcatcgg cgacctgggt cagtttgcga agcgcgtttg caatcggcac
     2821 tacggcgtgg gcgcggatgg aattgcagtc gccgagcgtt ccgaaaacaa cgcttcagat
     2881 ttctcggtgc gtatcttcaa tcccgacggc agcgaagcga gtatgtcagg caacggcacg
     2941 cgttgcaccg ccgcgtattt gttctggcac aaactctggt cgaacgatca gttgcgcctg
     3001 caaacgcgca acggcgtgaa acgatatctt ttgcgcgagc gtttggacgc gggcgcgttt
     3061 ctgtttcagt cggaattagg acaaccgaga ttcgacaccg cgtcgattcc gatgctgact
     3121 gacgagccgc gtgatcgcgt gcttgattat ccgcttcagg ttggcgatga aactctacga
     3181 gtcacggcgt tgcagatggg caatccgaat tgctgcatct tcgttgacga cttccgtagc
     3241 gtcgattggc gacgacttgg accattgatc gagcatcatc cgcaatttcc cgaacgcacg
     3301 aacgtgatct tcatacgcgt tcgcgatcgc ggcaacatcg aagagcgtct gtgggaacgc
     3361 ggcgtcggcg aaactgaaag ctcgggcact tgttcatgcg cggcggtagt tgcttctgtc
     3421 atcaacgaaa aaaccgatcg acgcgtcaaa gttcacgcgc cgggcggcgt gcttcccatc
     3481 gaatggcgcg atgacggcga agcggtgctg accggtcgcg ccgacttggt ttatagtggc
     3541 gagtggttgc aagagtccca ctaggagcga gagaggttcc ttgccccgtt tgtcttcgtc
     3601 ctccaatttc tgccgcgcgc ttagcgggct gcggatattt gttttgtctc tgatccacgg
     3661 gcttacgccc ggggctattc cctgctgcgc cttcggcgct aagcgcgcga gtcgatcgtg
     3721 caatttggtc gctgtcgctg gtttggcatt tttgctaaca gcgtgcggcg ctaaagtcgt
     3781 caaagaagct ccggccgaag ttcccgtgga aaagccaaaa ccgcccagcg cggttccgat
     3841 gtggctcggc aatcccgcgc gaaactttta cggcacgggg ccgctgccaa agtcgctgaa
     3901 ggtcatctgg gatttcaaaa cgggatctac gcgcgggcgg ctgcatccag atccctgggg
     3961 cggttcgggc tggcctgggc aaccggcggt tgtcggcgat cgagtctact accaatcgaa
     4021 cgacagctac gtctattgcc tgaaccgaaa tgacgccagt gtgatctgga aattcaagac
     4081 gaccgactgc gtcaaatctt cgccggcggt ggtgggcgac cgtctggtgg ttggcaatct
     4141 cgaccactac gtttattgct tgaacacaaa cgacgggtcg ctcgtgtgga agtatcagac
     4201 gggatttgaa actgattcgt cctcatcgat tgtcggagat cgcgtgtaca tcggcggcga
     4261 ggatcacttt tattactgct ttgatttgaa agatggtcgc gtcattttca agcagcagct
     4321 tggcggctcg gtcgaaggcg gcacgacggt cgttgacgat cgcatttacg ttgatacaga
     4381 ggctggcgat cttttctgct tgaaccggga agacggctcg atcatctgga aggcgcgcat
     4441 cggcgcggat tcaaattcaa caccggcggt tgtcaacggt tttgtttaca cggctgccga
     4501 agacggaatc gtgcgatgct ccaaacaaga cactggcgaa ccggtctgga cttacaaagc
     4561 cgaaggcgga ctcaatcaac gaacgaaaga gaagaatgga ttttgggcca gcgcgacggt
     4621 ctcaaatggt cgtgtgttca tcggatgcaa caatggttac atgtattgcc tttcggcgga
     4681 caaaggtgag ctgatttgga aacatctgat gcgcgctgcg gtctggggaa ctgcgccggc
     4741 cgtcgatggc cgtctcgtgt tcggcgacaa gagtggctat gtttacatac tttccgcgga
     4801 caacggagac ttggtttccg agctcaaaat tggcgacaat gttgacgcga cgcctgcggt
     4861 gctggatgga agaatctatg tgggcgcttt caacgggaag ttctactgtt taggtgagga
     4921 cgaagccgcc agtaaagaag ctgtcggcac tcagccatca gccgtcagcc agtcaccttc
     4981 gaatccaagt cgctgatagc tgactgctga tagcaattca tgcttctact aatcgacaac
     5041 acgattgacg ggcagggctc gagtccgcgc gaaatccgcc gcgcgctgga gagattacaa
     5101 cctgacatga ggattgtcgt tgaatcgttt catgacattt cgccggaact cgtcaagagt
     5161 ctcagccctt cgcatattgt tctcagcggc cagagtcatc cgtgggatca ctattcatcg
     5221 gaatcattgt cgggagtgtt ccatgtaatt cgcaacgcgc cacagccgat tcttggagtg
     5281 tgtggcggac agcagcagat ggcgctggcg tttggcgcgc ccgttggttt gattgaacgc
     5341 ctcgcgcccg gcgaaggcta tgaaggcgcg tttcgcgaac gcggtttttg cgccgttgag
     5401 ttggaatcgg atcctgacaa cgcgatcttt gctggattgc caaaacagat aacggtgtgg
     5461 gagtcacatt gcgatgaagt caaagcgctg ccggctgatt tcttctgcac ggcaaagaat
     5521 gaagtctcac agattcaaac gatgcaacac acctcgcgtc cgctctttgg cgtgcagttt
     5581 catcccgaac tattcgacga agaacatcag cacggccgca ccatcctgga aaattttctt
     5641 agtttgtaaa gcggttcgaa cagtttagaa gcgagctacc gcccgcccgc tcagtcgggc
     5701 gttagcccga ctctaaacaa atgaagccgg cgttgctcat gcgaggcaat ctcagcttca
     5761 tgcttcagcg tcaaatcaat gtcgtcgagt ccttccagca agcatcgtcg ttgaaaatcg
     5821 ccagtctcaa acgcagtaga gaagccgtgc gcgtccgtaa cgattttctt ttccagatcg
     5881 acggttgcct gagaacgcca gcgctccgaa cgcgccatgc gtgctggtgt gactgtcacc
     5941 gcagacgatc gtcaggcccg gctgagtcaa tcccaactcg ggaccaatta cgtgcactat
     6001 gccttgttcg tcagagtcaa tgtcgaaaag agtaattcca aactcagtac agttaaaacg
     6061 cagagcttcg atttgctttg cggcgatcgg atcggtaatc ggcagagatc gatccgtagt
     6121 cggcacgttg tgatcgatcg tggctttggt tagaccgcgc gcgaaaagct tttctcctgc
     6181 gccacggcca aaaagacttc aagttggttt atcatccgct tgccggcaaa aaaatagttt
     6241 cggtgcgcga actgtgcgcc gaagcattca tcgcgcacaa cgtggagtcg ccatatcgcg
     6301 aacgggtgat caagacgttc gagagacatc gcacgccgct gaacatctca atggagatgc
     6361 cgacgttgga agcaatcaag cgcctggtgg aaaagggatt gggagtggct ttgattccgc
     6421 gtctggcggc acaaactgaa atcgcccgcc gacaattggc cgggttaaca gtgcgagaga
     6481 tgcgtctgga aagacgactg catctgattt atcgaagagg tgcctcgctg tctcacgccg
     6541 cgaaggcatt tctgagagtc gcgcggggaa tcagtgtcaa ggcagagagg taggatcaga
     6601 tctgaacgca gaggacgccg aggaattcgt ggagggacgc aaaggagggc tctcctctct
     6661 gcgacctttg cgagaaactc tgcgggcctc tgcggttaag tccggtgaac tactgcatct
     6721 tgacgtccac aatctcgccg ccgaaggcgc gcaggacttg ttgcacggtg ggattctggg
     6781 cggctgcctg acgggcttgc cgtttcgcgc gctgcgtttc ttcgtcaggc gagagagctt
     6841 cgttttcgtc gctctctttg atcgcgaagc gaattccgat ttcccggccg cacacttcgt
     6901 ggcacatctc gcgcaggact ttcacgctct cagtcttagc cagagtgtcg cgataatgct
     6961 tcgcttcggg cgcaaactcg atcagcaact cgtcgccttc aatttctgcg cgctgggcgc
     7021 cgtcgagggc ggcgatcagt aagcgacgtc gcttcttttc gagcgctgct ttgatttggt
     7081 cgattaccga tcctgaagtc ttggacgacg ccccaacgat tgagtcctct atggcctgcg
     7141 gtccttcgct tggattcgcg acggcacttt tcgcagagtc ggcagaagtt gccgcgcggg
     7201 tcgcgcctgt tcccaacgcg ccgctcaccg gcgcaggctg tgatgtcttt ctttccgacg
     7261 gcggcctgcc tgttcgcaaa gcattttcaa gcgcgtcgat gcgcgcaacc agttcgccca
     7321 aaagcgcgag ccgacgcatc tccattagtt tcactaagcc cacttcgagc tgataacgcg
     7381 ggttcgccgc gtccttcaaa ctactttcag tttcggccaa cagatgaaaa aagcgaacga
     7441 ggtctgattc ggaaaagagc gcagcttgtt gctgaagcgc ggcctcctga accgaagaag
     7501 ag
//
LOCUS       DASZZE010000139         2831 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_4423, whole genome shotgun sequence.
ACCESSION   DASZZE010000139 DASZZE010000000
VERSION     DASZZE010000139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2831)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2831)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2831
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4423"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..184)
                     /locus_tag="VHD88_02810"
     CDS             complement(<1..184)
                     /locus_tag="VHD88_02810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20748.1"
                     /translation="MHVLVGIAGIVLIIVVLWDAFETIVLPRRVTRRVRLTRQFYRVT
                     WKPWSAIARSVSNNKRR"
     gene            complement(261..1559)
                     /locus_tag="VHD88_02815"
     CDS             complement(261..1559)
                     /locus_tag="VHD88_02815"
                     /inference="COORDINATES: protein motif:HMM:TIGR00225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HVS20749.1"
                     /translation="MSFKKKFTLIALSASLAVYTIAGAWLATRAQQPANDPGAQQRIF
                     ESVLQHIQNDYVDEPNMEKVRAGALRGLAYGLDPYSTYLTPEQVKEYQADGKSNQVGI
                     GAELSQVASFLYVVAPVKGSPADQAGVRAGDVIEYINGKATRDISLYDARQLLNGAPG
                     SEVKLRILRGRALTLTVRRSSFRAPAAEGHMEAGKIGVLRINSLENGEATDARAHLQD
                     LLKQGAQKIVVDLRSVAGGEIQEGVTVANFFIRDGSIAETIGREQKVLKTFDADPKLT
                     LFNGPAVVLIDTGTAGAAEIVASAFLEHKRGDVVGEKSFGAGADQALFTLRDGDGLLL
                     TTVKWASASGKPFLGEDRSHSGITPSVEVKRPENLDSADVEDLTGNEEEPAPNKPNQP
                     QVKPGTPEIVAPKPQPEDTQMKKALELLRDKQAAPAQRGA"
     gene            1704..2186
                     /gene="ruvX"
                     /locus_tag="VHD88_02820"
     CDS             1704..2186
                     /gene="ruvX"
                     /locus_tag="VHD88_02820"
                     /inference="COORDINATES: protein motif:HMM:NF015607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HVS20750.1"
                     /translation="MIALAEAKGIISTRESTPNAAGRLLAIDLGTKRVGVAVCDELQI
                     AVRPLPAIDRRSWKDLLSRVADFIASSKAQGLVIGLPLSLAGAEGSAAKSARAIAAKF
                     SQSLAVPVYLQDERLTTFAARSHLKSVARSEREIEIEVDSEAAAIILRDFIVSNRLAG
                     "
     gene            2281..>2831
                     /locus_tag="VHD88_02825"
     CDS             2281..>2831
                     /locus_tag="VHD88_02825"
                     /inference="COORDINATES: protein motif:HMM:NF014656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HVS20751.1"
                     /translation="MPATFSLWLYRELHLPVAHGKANDYIEIPRRSTPEGIANKLVSE
                     GVLRRKWPFLFYLKITGSAKLIKAGDYRFPSPITPLGVLKKLEEGEQRLSRFTVIEGW
                     TRWDIANSLSHVDELHLKDSNAALALTDDTSAIRDLDPVATNLEGYLFPATYSFPQDT
                     KPNAVVAAMVKRFHQEWTPERAE"
BASE COUNT          591 a          823 c          783 g          634 t
ORIGIN      
        1 cgcggcgctt gttgttgctg acgctgcgag cgatcgccga ccagggcttc cacgtaacgc
       61 gataaaactg tcgagtcaga cgaactcgcc tggttacgcg acgcggcaag acaatcgttt
      121 caaaggcgtc ccacagcacg acgatgatca gaacgattcc ggcaattcca actaagacgt
      181 gcatcggtgt aactctgaaa gcaaaaagcc gggcggacga acttgcgtcc ctcccggctt
      241 ctggtcgatt agcagctcag ctatgcgccg cgctgcgcag gagctgcctg cttgtcacgc
      301 aaaagctcca gagccttctt catctgcgtg tcttcaggct gcggttttgg cgcgacgatc
      361 tctggcgtac cgggtttcac ctgaggctga ttcggtttgt ttggcgcggg ctcctcttcg
      421 ttgcccgtca agtcttctac gtcggcgctg tccaggtttt ccggccgctt aacttcgacc
      481 gaaggtgtta tgcctgaatg cgatcggtct tcaccgagaa atggcttgcc gcttgccgaa
      541 gcccatttca ctgttgttag caaaagtccg tcaccatcgc gcaacgtgaa caacgcttgg
      601 tcggctccgg caccgaaact cttctcgccg acaacgtcgc cgcgcttgtg ttcaaggaac
      661 gctgaggcga cgatctccgc ggcgcccgcc gtgcccgtgt cgatcaaaac aacagccggc
      721 ccattgaata gcgtcagctt cggatcggcg tcaaaagtct tcaagacttt ttgttcgcgg
      781 ccgatcgttt ccgcgatcga gccgtctcga atgaaaaagt tggcaaccgt cactccttcc
      841 tgaatctcgc cgcccgcaac gctgcgaaga tccactacga tcttctgcgc gccttgcttc
      901 agcaagtctt gcaagtgggc gcgagcgtca gtcgcttcgc cgttttccaa actattgatt
      961 cgcagaacac ctatcttgcc tgcttccatg tgcccttccg ccgcgggtgc ccggaatgaa
     1021 ctgcggcgca cggtcaaggt cagtgcgcgc ccccgcagaa tgcgtagctt gacttcgctg
     1081 cccggcgcgc cgttgagcaa ttggcgcgcg tcatacaaag agatgtcgcg tgtggccttg
     1141 ccgttgatgt attcgataac gtcgcctgcg cgcacgccgg cttgatcggc cggcgagcct
     1201 ttcaccggcg ctacgacgta cagaaacgaa gccacctgtg acaactcagc gccgatgcct
     1261 acttgattgc tcttgccatc ggcctggtat tccttgacct gttcaggtgt caaataagtc
     1321 gagtatggat cgagaccgta agccaagcca cgcagcgccc ccgcccgaac cttttccatg
     1381 ttcggctcgt caacgtaatc gttctgaatg tgctggagca cgctctcgaa gattctttgt
     1441 tgagcgccgg gatcgttcgc gggttgctgt gcgcgagtgg ccagccacgc tcccgcgatc
     1501 gtgtacacgg caagtgatgc cgaaagcgca atcagtgtga atttcttttt gaatgacatc
     1561 agttggaccc tcaaaaaact atcaagcctg gctgtccggg agacttaagt gttttgccaa
     1621 acgcctgtat cataccgtgg cagattgagg tgcgcaagca acgcgagcgc tatgctactc
     1681 cgtaactgcg catctatttt tgggtgattg ctttggcaga agcaaaggga ataatttcga
     1741 cccgggaaag caccccgaac gctgcgggcc gtttgttggc aattgacctc ggaacaaagc
     1801 gagtcggcgt cgcagtgtgc gatgagttac aaattgccgt acggccgctc ccggcaatcg
     1861 accgccgaag ctggaaagac ttgttgagcc gggttgccga tttcatcgca tcatccaaag
     1921 cgcagggcct cgtaatcggt ttgcccttga gccttgccgg cgccgaaggt tcagccgcaa
     1981 agtccgctcg cgcgatagcc gcaaaattta gtcagtcgct cgcagtgcct gtttacttgc
     2041 aggacgagcg tctgacaacc ttcgccgcga ggtcgcatct aaaatcggtt gcgcgaagcg
     2101 agcgcgagat cgagatcgaa gttgacagcg aggcggcagc aataatcctg cgcgatttta
     2161 tcgtaagcaa tagactcgcc ggctgaatca tcacacttaa caggatccta tcgggtgctc
     2221 atcaaaacca ggaaagcgcg gaatcgtctg tggatcggaa gcgctctttt tttattggcg
     2281 atgcctgcca cgttctcgct ttggctgtat cgtgagttgc atctccccgt cgctcatgga
     2341 aaggcgaatg attacatcga gataccgcgg cggtccacgc ccgaagggat tgccaacaag
     2401 ctcgtgagcg aaggcgtgct gcgccgcaag tggccttttc ttttttactt gaaaattacc
     2461 ggcagcgcga agctaatcaa agcgggcgat tatcgcttcc cttctccgat cacgccgctg
     2521 ggagttttga aaaaactcga agaaggcgag cagcgtctca gtcgtttcac ggtgatcgaa
     2581 ggctggacca gatgggacat cgccaactct ctctctcacg tcgatgagct gcatttgaaa
     2641 gatagcaacg cagcgctggc gttaaccgac gacaccagcg cgattcgcga cctggaccct
     2701 gtggcgacca acctcgaagg ctatcttttc ccggcgacgt acagttttcc gcaagacacg
     2761 aaacccaatg ccgtcgtggc ggcgatggtg aaacgctttc accaggaatg gacgccggag
     2821 cgcgccgaat g
//
LOCUS       DASZZE010000140         1732 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_314003, whole genome shotgun sequence.
ACCESSION   DASZZE010000140 DASZZE010000000
VERSION     DASZZE010000140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1732)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1732)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1732
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_314003"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..195)
                     /locus_tag="VHD88_02830"
     CDS             complement(<1..195)
                     /locus_tag="VHD88_02830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20752.1"
                     /translation="MKLNILRLIVAALCCTSALMVIVNVRAQKSPPVRSDFAVSLTSL
                     GIATPAQTPAAAAAPQEKTVD"
     gene            complement(316..>1732)
                     /locus_tag="VHD88_02835"
     CDS             complement(316..>1732)
                     /locus_tag="VHD88_02835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20753.1"
                     /translation="PEKKSLTTKRSVRESEFKLRSPAKFFPQKLVIMKKPSIFILIAL
                     VLFAAAAVQAQTPESDPIRRPRVVTGSKARASAKFQSQSTQTQTPARPAETGTKPEKP
                     SSAPVSSKPEATESSTAVQREESSAAARHLSPNRIRLRRTEAERLMKVRPLPTAMTSP
                     SLDYVTLAALLPETSQIHLIKLAKQTFLTKGTELSLTTSQGLPIQLRIVRANGVNTAV
                     TIFDNRNRSLIPLVVEFPIERRGVFREMAYYTSAHPALLSPDVVKTGQTYVSAMVDLA
                     AKRLRERGSPVAQNIVNVAKRLCVIEHVDHDRFRNENRIALFEEIYSLYALNELDTYR
                     YSVSSAGAGGMVQMIPWTYALMRQRHPGVGLNPDFVFGMRNHGNALEAMLLYMQDTWN
                     DLVANDDVQFALSSKQATTNELMAAAYNSNAAKLPGYIRRGGASWRSLIPRETQTYLQ
                     ILQSYDSLMKAKENHSRPKRS"
BASE COUNT          378 a          456 c          509 g          389 t
ORIGIN      
        1 atcgacggtt ttctcctggg gcgcggctgc ggcggccggt gtttgcgccg gcgtcgcgat
       61 accgagactc gttagcgaaa ctgcaaaatc gcttcggact ggcggcgatt tttgcgcgcg
      121 cacgttcacg ataaccatca aggcgctcgt gcagcagagt gcagcgacga tgagtctgag
      181 aatatttagt ttcatttcgc tctccgaata gtcatgagtt ggcaagtgtt tctgacacga
      241 ccatgaaaac agacttgcat ataacattgc gccactaagt ggcgcaagtt cggagaataa
      301 attgtggagg gaaagctaag atcgctttgg gcgagagtga ttctctttag ccttcatcag
      361 gctgtcgtac gattgcagga tttggaggta agtctgcgtc tcgcgtggaa tcaaactgcg
      421 ccacgatgct cccccacggc gaatatagcc aggcaatttc gcggcgtttg agttgtaagc
      481 ggcggccatc aattcattcg tcgtggcttg ctttgagctc agcgcaaact gaacatcgtc
      541 gttggccacc aaatcgttcc acgtgtcctg catgtaaagc agcatcgctt ccaaagcgtt
      601 tccgtgattg cgcatcccga acacgaaatc gggattcaag ccgacgcccg gatgacgctg
      661 acgcatcagc gcgtacgtcc agggaatcat ctgcaccatg ccgcctgcgc cggcagagct
      721 gactgaatag cggtaagtat cgagttcatt cagcgcgtaa agcgaataga tctcttcaaa
      781 cagggcgatg cgattttcat tgcgaaagcg atcgtggtcg acgtgctcga tgacgcacag
      841 ccgcttggcc acattgacga tgttctgcgc cacgggcgag ccgcgttcgc gtaaacgttt
      901 cgccgccaga tcaaccatcg ccgaaacgta ggtctggccc gttttgacga catcgggtga
      961 cagcagcgcg gggtgcgccg aagtgtaata ggccatctcg cgaaacacgc cgcgacgctc
     1021 gatcggaaac tcgacgacca gcgggattaa cgatcgattt cgattgtcga agatcgtgac
     1081 ggccgtgttt acgccgttgg ctcgcacaat gcgaagttgg atcggcagtc cctgcgaggt
     1141 cgtcaacgaa agctcagtgc ccttcgtcaa aaaggtttgc ttcgctaatt tgatcagatg
     1201 aatctgcgaa gtctctggca gcaacgccgc cagcgtcaca taatcgagcg aaggcgaagt
     1261 catcgccgtc ggcaaggggc ggaccttcat caagcgttcc gcctcggtcc ggcgcaagcg
     1321 aattcgattg ggcgacagat gccgcgccgc cgcgcttgat tcttcgcgtt ggacagccgt
     1381 tgacgactcg gtcgcttccg gcttgctcga aaccggcgca gaagaaggct tttcaggctt
     1441 tgttccagtt tccgcgggac gcgcaggcgt ctgcgtttgc gtggactggc tctggaactt
     1501 cgcggaggct ctcgctttgg atccggtcac tacccgcgga cggcggattg gatcagattc
     1561 gggtgtttga gcttgaacag cagcggcggc gaagagaacg agcgcaatga gaataaagat
     1621 ggagggcttt ttcataatga caagtttctg agggaaaaac ttcgcgggag aacgaagctt
     1681 gaactcagat tcgcgcacgc tccgcttggt tgtcaacgac tttttttctg ga
//
LOCUS       DASZZE010000141         1527 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_101747, whole genome shotgun sequence.
ACCESSION   DASZZE010000141 DASZZE010000000
VERSION     DASZZE010000141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1527)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1527)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1527
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101747"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1366
                     /locus_tag="VHD88_02840"
     CDS             <1..1366
                     /locus_tag="VHD88_02840"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HVS20754.1"
                     /translation="VRRIKPSAVAVETFDLRGEKLSRGSGFFIDLDRIVTNRHVIEGA
                     YRAEVHLNSGHAYQVKSVVAVDAEGDLALLKVEAPPNLVRPLSLDRTSPQEGESVVVI
                     GNPFGLEGSVTNGIVSAVRDIPGFGRIIQITAPISPGSSGSPVVNMQGQVIGVATLQI
                     TGGQSVNFAIPSERIAQLHRSAQSQDAQTMSLSELAAATSRDKHAKAVQSFRDGLSFL
                     SKDDCEKALPYFQQAAESDSSYAEAWAQTGFCNEKLGHHAEAIEASKKAVSIRPSAES
                     YFNLGLANYYLKQYRESEAAYRQSIKIDPYNAADAYYALGLTYRAWGQFDEEIQAYKH
                     AIRLKPDYASAYDRLGQRYLQVKKFPEAVEAFKQLAALKPGDATTQNNLGEAYEAMNR
                     HDESVEAFRQAIRLKPDFGKAYFNLGKTLLARGERDAAIEQYVVLQNLDQDWAERLYN
                     LIYP"
BASE COUNT          350 a          428 c          417 g          332 t
ORIGIN      
        1 cgtgcgacgc atcaagcctt ccgcggtggc ggttgagact ttcgatttgc gcggcgaaaa
       61 actttcgcgc ggcagcggct ttttcatcga tctcgatcga atcgtcacca atcgccacgt
      121 gattgagggc gcatatcgcg ccgaagttca cctcaactcc ggtcatgcgt atcaagtgaa
      181 aagcgtggtt gcggttgacg ccgagggtga tctggcattg ctgaaagttg aagcgccgcc
      241 gaatctcgtc cggccactct cgctcgatcg cacttcgccg caggaaggcg aaagcgttgt
      301 ggtcatcggt aatccgttcg gcctggaagg cagcgtgacg aacggtatcg tttccgcggt
      361 gcgcgacatt cccggctttg gccgcatcat tcagatcacc gcgccgattt cgcccggatc
      421 gagcggcagt ccggtcgtga acatgcaagg tcaggtgatc ggagtagcta ctctgcaaat
      481 caccggcggt caaagcgtta attttgcgat tccttcggag cgcatcgcgc agcttcatcg
      541 ctcggcccaa tcacaagacg cgcaaacgat gtcgttgagc gagttggccg ctgccaccag
      601 tcgcgacaaa cacgcgaagg ccgtgcagtc atttcgcgac gggctcagtt ttctttcaaa
      661 agacgattgc gaaaaagcgc tgccttactt tcaacaggcc gcggaatctg atagcagtta
      721 tgccgaagcg tgggcgcaga caggtttctg taacgaaaag ctgggccatc acgctgaagc
      781 gatcgaagcg tcgaagaaag ccgtcagcat tcgcccgtca gccgaatcgt atttcaatct
      841 tggcctcgcg aactattatc tgaagcagta tcgcgaatcc gaagcagctt atcgccagtc
      901 aattaagatt gatccttaca atgccgcgga tgcttactac gcgctcggct tgacctatcg
      961 tgcctggggt cagtttgacg aagagattca agcttacaaa cacgcgatcc ggctcaagcc
     1021 cgattacgcc agcgcgtacg atcgtcttgg tcagcgctat ttgcaggtga agaaattccc
     1081 ggaagccgtc gaagctttta agcaactcgc ggcgctaaag ccgggcgatg caactacgca
     1141 gaacaatctg ggcgaagcgt acgaggcgat gaatcggcac gatgaatcgg tcgaagcatt
     1201 tcgtcaagcg attcggctta agccggattt cggtaaggcc tatttcaatt tgggcaagac
     1261 cctgctcgcg cgcggcgaac gcgacgcggc catagagcaa tatgtggtac tgcagaatct
     1321 cgatcaggat tgggctgaga gactctacaa cttgatctat ccgtaagttc gtccaaacag
     1381 aaatcgaggc cggatcgcgc tctccccttc acaatccggc ctcaacccac ggtcgcctcg
     1441 cggccaccga acttaaaatg ttgtcaaaac tctcgctgcc gatcgataac gatctctcac
     1501 cctgatttac cgttgatgaa cgcgttc
//
LOCUS       DASZZE010000142         5693 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_200568, whole genome shotgun sequence.
ACCESSION   DASZZE010000142 DASZZE010000000
VERSION     DASZZE010000142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5693)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5693)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5693
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200568"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..649
                     /locus_tag="VHD88_02845"
     CDS             <1..649
                     /locus_tag="VHD88_02845"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="YicC/YloC family endoribonuclease"
                     /protein_id="HVS20755.1"
                     /translation="NRPLIAGYVQALRDIQQQFNLAGEIDVNSVARVPGALTPARDDF
                     SDANMEGVERAIDEALDNLENMREIEGAMLADEMRVRLAKIEAEVPIIEAAAAGLADA
                     YQQRLQKRIAELIARGGQAIELDAGRLAQEVAYLADRSDISEELARLRSHVEQFRAAL
                     NVAGEVGKRLDFLLQELNREANTVLSKSTEISIKDAALAIKAEVEKLREQVQNVE"
     gene            639..1328
                     /gene="gmk"
                     /locus_tag="VHD88_02850"
     CDS             639..1328
                     /gene="gmk"
                     /locus_tag="VHD88_02850"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: protein motif:HMM:TIGR03263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004385 - guanylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HVS20756.1"
                     /translation="MLNELIKAEDKAAADVGRGMLIVVSSPSGGGKGTLIDRVLKTVP
                     GVSYSVSYTTRAPRRAEQDGREYFFVSTAAFEDLIQRGEFLEWANVYGHLYGTSHTQV
                     ERERAAGRDIILEIDVQGAASIRRRIDDAVSVFILPPSFELLRERLVARGTDSPADLA
                     RRLRGAPAEVEQYKDFQYVILNDAINRASSQLASVIYAERARLKRQEARLKDTLANFG
                     ALSEPPAVAGG"
     gene            1451..1687
                     /gene="rpoZ"
                     /locus_tag="VHD88_02855"
     CDS             1451..1687
                     /gene="rpoZ"
                     /locus_tag="VHD88_02855"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:NF013365.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000345 - cytosolic DNA-directed RNA
                     polymerase complex [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HVS20757.1"
                     /translation="MATLHEEESEPQTQEIDSKYRLIILAAKRSKQLQRGARPRIEID
                     SAKHKPTRIALEEVIRGKVQFHTTNDGEDEAEEA"
     gene            1836..1982
                     /locus_tag="VHD88_02860"
     CDS             1836..1982
                     /locus_tag="VHD88_02860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20758.1"
                     /translation="MTGALAARVRVIVTEIQQRRPTTRHSLAVEQSSLRIVAVVLGDL
                     IRGR"
     gene            complement(2004..3047)
                     /locus_tag="VHD88_02865"
     CDS             complement(2004..3047)
                     /locus_tag="VHD88_02865"
                     /inference="COORDINATES: protein motif:HMM:NF012618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HVS20759.1"
                     /translation="MAGLAFSPDGATLATSGGGRRDRTVDVWQTLTRQLRYVLLPGKG
                     SNTDLAFSPDGRILATWGYGPAIKLWGVETGNLKSVVAESHDFVHVSISADSHTLATA
                     NNTDFSVKLWDIETGRLKATLPHPNPKQFEFGVGADVVFNPNGRTLATCSHDTLYFWD
                     AKTLQLLITLVDPSVERSTGPLGLRTLKGFSHGDTIYTLMFSPDGRVLATASRDGTAK
                     LWDGASGKLKATLRHDRKVTRLAFTLDGRTVATGSEDRTARLWDVATGRLITTLDHRG
                     TVWSIDFSPDGKLLATAADNDHSVKIWDVATGKLLDELKDARYPVAFSPDGRTLATAS
                     KDATVLLWDMPPR"
     gene            complement(3309..4685)
                     /locus_tag="VHD88_02870"
     CDS             complement(3309..4685)
                     /locus_tag="VHD88_02870"
                     /inference="COORDINATES: protein motif:HMM:TIGR01643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20760.1"
                     /translation="MGRVSQQSRPYRNGETQQWSTPTYDALGRTKTVTAPDGSVTQSF
                     YNEASRPDVASTLPGETTRVQDAWGRERWGRTDASGKLVEVVEPNPGGNGSVANSGMV
                     TTYSYNTLGNLVTINQNPQTRSFKYDSLGRLTAQKLAEMSATLNDAGTYVGAGTWSDV
                     FTYDDRSNLTSRTDARGVKTVYNYGGDPLNRLQTVSWDTTGFGDTANPILPAATVTYS
                     YRTKSFASQLLAVTQLSSVTASGVSTESYSYDSEGRVSSKTLTLTSRPSYPMTSDYSY
                     DTLDRVTDVRYPAEYGNGSAPRKVVHHDYDIASRLTGLTFDGQSQAASIVYNAASQTT
                     SLSVGAAGTNQVSESYTYNVQTGLLDSQTATRNGSTLLNLSYDYTNASGKRTGQLTKI
                     TNALDTSSNHNRSYAYDALGRLTQAQGGPFATPAWTQNYSYDRYGNRTSVSASGNSCR
                     TTIRWECL"
     gene            complement(4586..5275)
                     /locus_tag="VHD88_02875"
     CDS             complement(4586..5275)
                     /locus_tag="VHD88_02875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20761.1"
                     /translation="MSAARPRPPSSGYGTVFNQVTEVRDFDYGGVALLRSTRTQYQNS
                     ANYTNRHIFNLPLTVEVYAPDGFTRLPHTDYQYDGQTLFDAPGVVMHQDSSNPYAPPV
                     WVDGYWEWNCDAIDQPCFQYWVPGYWQTVYDPSTDFRGNVTQVTSYADAINLTGAMTQ
                     TRRYDITSNLVILAGCDKRRRSEQAASGISSIRFMTTWAACRSSRGLIAMARRSSGAP
                     QPTMHLDERKQ"
BASE COUNT         1189 a         1598 c         1634 g         1272 t
ORIGIN      
        1 caatcggcct ttgattgccg gctacgttca ggcactgcgc gacattcagc agcagttcaa
       61 tctggccggt gagatcgatg ttaattcggt ggcgcgcgtg ccgggcgctc tgactcccgc
      121 gcgcgacgat ttcagtgatg caaatatgga aggcgtcgag cgcgcgatcg atgaagcact
      181 cgacaatctg gaaaacatgc gcgaaatcga aggcgcgatg ctggcggacg agatgcgtgt
      241 gcgcctcgca aaaatcgaag ccgaagtgcc gataatcgaa gccgccgccg cgggactcgc
      301 ggatgcttat cagcagcgtc tgcaaaaacg gatcgccgag ctaatcgcgc gcggcggcca
      361 agcaatcgaa ctcgacgcgg gccggctggc gcaggaagtt gcgtacctcg ccgatcgcag
      421 cgacatcagc gaagagttgg cgcgtctgag aagtcacgtc gaacagtttc gcgcggcgct
      481 caatgtcgcc ggcgaagtag gcaagcgtct cgactttctg ttgcaggaac tcaaccgtga
      541 agcgaacacc gtcttgtcaa aatcgactga gatttcgatc aaggacgcgg cgctcgcgat
      601 caaggctgag gttgagaaac tgcgcgaaca agtgcaaaat gttgaatgag ctgatcaaag
      661 cggaagacaa agctgccgcg gatgtcgggc gcggaatgct catcgtggtc agctcgcctt
      721 cgggtggcgg caaaggtact ctgatcgatc gagttttgaa aacggtgccc ggcgtcagtt
      781 actcggtctc gtacacgacg cgcgcgccac gcagagcaga acaggacggc cgcgaatact
      841 ttttcgtttc gaccgcggcg ttcgaagatt tgattcaacg cggcgagttc cttgaatggg
      901 cgaatgttta tggtcacttg tacgggacca gccatacgca ggtcgagcgc gaacgcgcgg
      961 ccggacgcga catcattttg gagatcgacg tacaaggcgc ggccagcatt cgccgacgga
     1021 tcgatgacgc cgtcagcgtc tttattttgc cgccatcgtt tgagctgctg cgcgaaaggc
     1081 tcgtagcgcg cggcacggat tcaccggctg atctcgcacg gcgtttgcgc ggcgcgccgg
     1141 ccgaggtcga gcagtacaaa gattttcagt acgtgattct gaacgacgcc atcaaccgcg
     1201 cttcgtcgca actggcgtcg gtaatttacg ctgagcgcgc gcgactgaag cggcaggaag
     1261 caagactgaa agacacgctc gcgaattttg gcgcgctgtc agaaccgcct gcggtagcgg
     1321 gcgggtagca ccgacggggc attagcccga ccgttaggga gggctcagac ggcattacag
     1381 atttcgacta agacgcaggc actttaagtt tttcaattgc agcgcattcg gaaggactca
     1441 aacacataac atggcaactt tgcatgaaga agaatccgaa ccacagacac aggaaatcga
     1501 ttccaaatac cgtctgatca ttctggccgc caagcgcagc aaacagcttc agcgcggcgc
     1561 gcggccacgt atcgagatcg attccgcgaa acacaaaccc acgcgcattg ccttggaaga
     1621 agtcattcgg ggcaaggttc agtttcatac tacgaatgac ggtgaagacg aagcggaaga
     1681 ggcttaacaa tcctcgcctg agcaaggcac gcacttcgtt tacccaactc acatcccttt
     1741 gtagtccggc ccgccgctcg ctgcaatcta cccagcgcgt catattcgta accgcgatcc
     1801 ttgttgtgat cctgattgtt cgagattttg gttaattgac cggtgcgctt gccgctcgtg
     1861 ttcgcgtaat cgtaactgag attcagcagc gtcgtcccac cacgcgtcac agtttggctg
     1921 tcgagcaatc cagtctgcgg atcgtagccg tcgttctcgg tgatttgatt cgcggccgtt
     1981 gagccgacat ttatcgcccc aggtcatctc ggcggcatgt cccacaaaag aacggtggca
     2041 tctttactgg ccgttgccag cgttcgtcca tcagggctga acgcaaccgg atagcgcgcg
     2101 tctttcaact catcgagcaa ctttccggtt gcgacatccc aaatcttcac tgaatggtcg
     2161 ttgtcagctg ccgtcgcgag caacttccca tctggactga aatcaattga ccataccgtt
     2221 ccccggtggt cgagcgttgt gatcaaccgg cccgtcgcca catcccacaa acgcgccgtg
     2281 cgatcctcac ttcctgtcgc aactgtccgt ccgtcgagag tgaaggctaa cctagtcacc
     2341 ttgcggtcgt gtctgagcgt tgccttcaac tttccgctcg caccatccca aagttttgcc
     2401 gtcccgtcgc gacttgccgt tgccaggact ctcccgtcag ggctgaacat caaggtgtag
     2461 attgtgtcgc cgtgactaaa ccctttgagt gtcctgagtc ccaacggccc cgtagatctc
     2521 tctacggatg ggtcaacaag cgttatcaat aattgaagcg tctttgcatc ccaaaagtac
     2581 agcgtatcat ggctgcaggt tgcgagtgtc ctcccgtttg gattgaagac tacgtcagcg
     2641 cccactccga actcgaactg cttcggattc ggatgaggaa gagttgcctt cagccgccca
     2701 gtctcaatgt cccagagttt cactgaaaaa tctgtgttgt ttgctgttgc cagtgtatgg
     2761 ctgtcggcgc tgatagacac atggacgaag tcatgcgact cggcaacaac ggacttcaga
     2821 ttacctgtct ccacacccca cagctttatc gccggcccat atccccatgt ggccaggatc
     2881 cttccgtcag gactgaacgc tagatcagtg ttcgaaccct ttccgggtag cagcacgtat
     2941 ctcaactgac gagtcagggt ctgccagaca tctacggtgc gatctcgtct tccaccaccg
     3001 gaggtcgcca aagtggcgcc gtccgggcta aaagccaaac cggccacttg caacttgtac
     3061 gtggtcggca agcgagtggg gaccagcggt ctgacgccaa ttgctgggga gcgtggcaac
     3121 agacgtgctg gttgagtgtg acgcaaatac caataaccga gccggacggt ttgtcattcc
     3181 aacgaagacg tatcctatga ctaatagcgc gagtatgctg ataacgtctc ttttcatcgg
     3241 cttgctcctg ctagggtctg gttgacctgt aaacaataag gccaccaaaa gcgggaaagg
     3301 cgacgaacct ataaacattc ccaccggatg gtcgtccggc aagaattgcc ggaagcagaa
     3361 acgctggtgc gatttccgta gcgatcgtag gaatagtttt gcgtccaggc gggtgtagca
     3421 aatgggccgc cttgtgcttg agtcaatctt cccagcgcgt catacgcata actacggttg
     3481 tgattgctgc tcgtgtcgag agcgtttgtg atttttgtta gttggccggt gcgcttaccg
     3541 ctggcgttcg tgtaatcgta agagagattg agcagcgtgc tgccattgcg cgtcgctgtt
     3601 tgactgtcga gcaatccggt ttgcacgttg taggtataac tctcgctgac ttgattcgtg
     3661 cccgcagcgc caacactcaa cgaagtggtt tgactggccg cgttgtaaac gatgctcgca
     3721 gcctgggatt gaccgtcaaa cgtgagcccg gtcaaacggc tggcgatgtc gtaatcgtga
     3781 tgcaccactt tgcggggcgc gctcccgtta ccgtactctg ccggataacg aacatcggtg
     3841 acgcgatcca gcgtgtcata actgtagtca ctcgtcatcg ggtaagatgg acgactggtc
     3901 aacgttaagg tctttgagct gacccttcct tccgaatcat agctgtaact ttcagtgctg
     3961 acacccgacg ctgtgacact gctgagttgt gtcacagcga gaagctgcga ggcaaaggac
     4021 ttcgtccgat aactgtatgt gacagttgct gccggaagga tcggattcgc ggtgtcgcca
     4081 aatccggtcg tgtcccagga aaccgtctgc aagcgattca aaggatcgcc gccgtagtta
     4141 tagacggtct tgacgccgcg cgcgtccgtc cgcgaggtca ggttcgagcg atcatcataa
     4201 gtgaagacat cactccacgt gcccgcgccg acataagtgc ccgcatcgtt gagcgtggcg
     4261 ctcatctccg ccagcttctg cgcggtcaag cgccccagcg aatcgtactt gaacgatcgg
     4321 gtctgcggat tctggttgat ggtcacaaga ttgccgagcg tgttgtatga ataggttgtg
     4381 accatgccgc tgttggccac tgatccattg ccaccgggat ttggctcaac aacttcaaca
     4441 agttttccgc tggcgtcggt gcggccccaa cgctcgcgtc cccacgcatc ttgcacgcgc
     4501 gtggtttccc cgggaagggt gctcgcgaca tccggccggc tcgcttcgtt atagaagctc
     4561 tgggtaacgc tgccatcggg tgcagtcact gttttcgttc gtccaagtgc atcgtaggtt
     4621 ggggtgctcc actgctgcgt ctcgccattg cgataaggcc gcgactgctg cgacacgcgg
     4681 cccatgttgt cataaatcgt atcgacgaaa tcccagacgc cgcctgctcc gagcgccttc
     4741 tcttgtcgca ccccgccaag atcaccaggt tgctggtaat gtcatagcga cgcgtttgag
     4801 tcatcgcgcc ggtgagattg atggcgtctg catagctcgt tacttgcgtg acgttgccgc
     4861 gaaaatccgt cgaaggatca tagacagttt gccaatagcc gggaacccaa tactgaaagc
     4921 atggctggtc gattgcgtcg cagttccatt cccaatagcc atcaacccaa accggaggcg
     4981 cataagggtt cgatgagtcc tggtgcatca ccacgccggg agcatcgaag agcgtctggc
     5041 cgtcgtattg atagtcggtg tgcggcagcc tggtgaaacc gtcgggcgca tagacttcca
     5101 ccgtcagcgg cagattgaag atgtgccgat tcgtatagtt ggcgctgttc tggtattgcg
     5161 tgcgcgtcga gcgcagcagc gccacgccgc catagtcgaa gtcgcgcacc tcggtcactt
     5221 gattgaaaac ggtgccatag cctgaactcg gcggccgtgg tctggctgcg ctcatcggtc
     5281 ttttccacgc gcagcggccg cggcgagtcg tatgcgccct gctgccacgt agaagaactg
     5341 ctctgaagtg gctggccctc ggtaacgtat gtctcgtcgt ggtaaaccag cccatcgagg
     5401 aaacttcccg gcacattata ggaaagctgc ttgctcgtcg ttccgtttgg cagcgtgatg
     5461 gtcaccgtgc gcgggttcgc gttctgattt ccaccgtaag tcgtggtggc ttgatctgtg
     5521 ttgacgccat cgcgcgtcca cgtctcagtc atcgaggtgt aggtgggcgc gtcggtcaga
     5581 ctgtagttcg gcgttaatgg atagttataa ctttccgtgc gcgtggtttg gcctggcgtt
     5641 accgtgccct gatcgttgag cgaggccgcg gaaaagccca tgccgcgctg ctc
//
LOCUS       DASZZE010000143         4139 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_149078, whole genome shotgun sequence.
ACCESSION   DASZZE010000143 DASZZE010000000
VERSION     DASZZE010000143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4139)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4139)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4139
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_149078"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..505)
                     /locus_tag="VHD88_02880"
     CDS             complement(<1..505)
                     /locus_tag="VHD88_02880"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HVS20762.1"
                     /translation="MRLLIQNGYVIDPSQGTNAGKNLFVEDGRVVGLLSQSDGVPEGS
                     EILDATGLIVAPGFIDMHVHLREPGHEYKETIASGAAAAAAGGFTTVCAMPNTDPIND
                     SPAVTRFIIEQAERAGAANVFPIGAITKNSAGNELAEMGEMKAAGIVAVSDDGRPVPS
                     AGMMRRAM"
     gene            complement(584..1594)
                     /locus_tag="VHD88_02885"
     CDS             complement(584..1594)
                     /locus_tag="VHD88_02885"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HVS20763.1"
                     /translation="MSANFKLKHLLGIRELTADQITHLLDTAETFCDISKREIKKVPA
                     LRGRTVINLFFEPSTRTRTSFEIAAKRLSADAINISVSTSSVSKGETLLDTARNLEAM
                     APDCIVIRHSSAGAPQHLARACNAAIVNAGDGAHEHPTQALLDALTIREHKGRLAGLK
                     VAIIGDILHSRVARSNIYLLSKLGATIGVAGPGTLVPPEFADLIEQGVRVERTVEDAV
                     ADADVVVILRVQRERQTDAFVPSMREYAVHYGLHVSHLDLAAPDAIVMHPGPMNRGIE
                     IASEIADGGRSLILDQVTNGVAVRMAVLYLLAGTSKSENGIKKNGKNGVKDKKERNRK
                     SL"
     gene            complement(1697..2266)
                     /gene="pyrR"
                     /locus_tag="VHD88_02890"
     CDS             complement(1697..2266)
                     /gene="pyrR"
                     /locus_tag="VHD88_02890"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: protein motif:HMM:NF003549.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyr operon transcriptional
                     regulator/uracil phosphoribosyltransferase PyrR"
                     /protein_id="HVS20764.1"
                     /translation="MEFTEKARIMDGARINRALARLASEIIEENHGTDDLLLVGIRRR
                     GVPLANRIADKIADLEGKRPPVGILDITLYRDDLSTVGAKPVVSGTELPGDIEGHCIV
                     LIDDVLYTGRTVRAAIDQLIDFGRPRRVQLAVLIDRGNEHRELPIQADYIGKLVPTKK
                     SEIIKVMLNDFDEDEGVVIVERPAAEAAA"
     gene            2412..3524
                     /locus_tag="VHD88_02895"
     CDS             2412..3524
                     /locus_tag="VHD88_02895"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: protein motif:HMM:NF003645.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004152 - dihydroorotate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006222 - UMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HVS20765.1"
                     /translation="MSLYASIVRPILFRLPAESAHEFALRSLSAALSTTAARRFAERR
                     FQSAPFGELRRFGLTFRNPVGLAAGLDKNGTAAQALAALGFGFIEVGSCTNEAQPGNP
                     RPRLFRLPRDRALINRAGFNNCGASQLAENIKQHRPDCIVGVNIGKSRSVPISEAVSD
                     YIASFDTIYDVADYIAVNVSSPNTPNLRELQRPQMLGDLLERLQRRNDELAQRSSLLQ
                     PKPLLIKIAPDLNRSEIESIVEVALRNNIAGIIATNTTVNREGLLTSQEKVEACGEGG
                     LSGAPLQNRSNEVIALIYRRTRGALPIIGVGGVFTAVDAWEKISSGASLIQLYTGFIY
                     EGPNVARRINEGLAQILKREEFQSLDEAVGCRAKWS"
     gene            3654..>4139
                     /gene="pyrF"
                     /locus_tag="VHD88_02900"
     CDS             3654..>4139
                     /gene="pyrF"
                     /locus_tag="VHD88_02900"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF012441.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004590 - orotidine-5'-phosphate
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HVS20766.1"
                     /translation="MHAAKDKLIIALDVDTADRALDLFDALREVAGMFKIGSQLFTAA
                     GPDIVRQVVAKGGRVFLDLKFHDIPNTVAAAGIEATRLGVSILNVHASGGAEMMKRTA
                     EAIAETAAREALSKPKVIAVTMLTSLDEESLKRIGIETGPRQLVIKLARAAADCGLDG
                     VV"
BASE COUNT          875 a         1177 c         1172 g          915 t
ORIGIN      
        1 ccatcgcgcg tcgcatcatt cccgccgagg gcaccggcct gccatcgtcg gaaacagcaa
       61 caatacctgc ggctttcatc tcgcccattt ccgcgagttc gttgccggcg gagtttttcg
      121 taatcgcgcc gatcgggaaa acattcgcag ctccggcgcg ttcggcttgc tcgatgatga
      181 aacgcgtgac cgccggactg tcgttgattg gatccgtgtt gggcatcgcg caaacggtcg
      241 tgaaccctcc cgctgccgca gccgcagcgc cgctggcaat cgtttctttg tattcatgtc
      301 cgggctcgcg caggtgcacg tgcatgtcaa tgaagccggg cgcgacgatc aatcccgtcg
      361 cgtcaagaat ctcagaccct tcgggcacac cgtcgctttg gctcagcagt ccaaccacgc
      421 ggccatcttc gacaaaaaga ttcttgcccg cgttagttcc ctgcgatggg tcgatgacgt
      481 aaccgttttg aatcagcagg cgcataactg cttttttctc tgtcctctgt gttcctcggt
      541 gccctctgtg gtaaagactc tttcaccaca gaaacacaga ggttcataga gattttcgat
      601 ttcgttcctt cttgtctttc acgccgttct tgccattctt ctttatcccg ttctcgctct
      661 tgcttgtgcc ggcgagcaag tacagcacgg ccattcgcac cgcgacgcca ttcgttactt
      721 gatccagaat cagcgagcgt ccgccgtcgg caatctcaga agcaatttcg atcccgcgat
      781 tcatcgggcc cgggtgcatc acgatggcat cgggcgcggc caggtctaga tgacttacgt
      841 gtaaaccata gtgcacggcg tactcgcgca ttgacggaac gaatgcatcg gtctgccgtt
      901 cgcgttgaac gcgaaggatc actactacgt ccgcatcggc aactgcatct tcaacggttc
      961 gctcgacgcg cacgccttgc tcgatcagat cagcgaactc tggcggcacc agcgtgccgg
     1021 gaccggcgac gccgatcgtc gcgccgagtt ttgaaagcag ataaatgttc gaacgcgcga
     1081 cgcgcgagtg caggatgtcg ccgatgattg cgaccttgag accagcaagg cgacctttgt
     1141 gctcgcgaat cgtgagcgcg tcgagcagag cctgtgtcgg atgttcgtgc gcgccgtcgc
     1201 cggcgttcac aatcgccgcg ttgcaggcgc gcgccagatg ctgcggcgcg ccggccgacg
     1261 agtggcgaat gacgatgcag tcaggcgcca tcgcttcgag atttcgcgcc gtgtcgagca
     1321 aggtctcgcc cttcgacacg ctcgacgttg acacactgat attgatcgcg tctgcggata
     1381 gacgcttggc cgcgatctcg aatgaagtgc gggtacgtgt cgatggctcg aagaaaagat
     1441 tgatgactgt tcggccgcgc agcgccggca ctttttttat ctcgcgcttc gaaatgtcgc
     1501 aaaaagtctc agccgtgtcg agcagatgcg tgatctgatc ggcagtcaac tcgcggatgc
     1561 cgagcagatg tttcaacttg aagttagcgc tcattagcaa cgtggcacag acttcagcct
     1621 gtgattcttc cctgctgtcg gtaacacaga ctgaagtctg tgccacacaa taaaaaaagc
     1681 ggcctttcgg gccgcttcac gctgcagctt ctgctgccgg tcgctcaaca ataaccaccc
     1741 cttcgtcttc gtcaaagtcg ttgagcatga ctttgataat ctcgctcttt ttggtcggta
     1801 ccagcttgcc gatgtaatcc gcctgaattg gtaactcgcg atgttcgttg ccgcgatcga
     1861 tcagcaccgc aagctggact cgccgcggcc gaccgaaatc gatcaattga tcgatggccg
     1921 cgcgcaccgt gcgccccgtg taaagcacgt cgtcaatcag cacgatgcaa tgtccttcga
     1981 tgtcgcccgg tagttccgtg ccactgacga cgggcttggc gccgaccgtc gaaagatcat
     2041 cgcgatacaa agtgatgtcg agaattccga cgggcgggcg cttgccttcg agatccgcga
     2101 tcttgtcggc gatgcggttg gccagcggga caccgcgacg acgaattccc accagaagca
     2161 gatcgtcggt gccgtgattt tcttcaatta tttcggaagc tagtcgagcc aacgcgcgat
     2221 tgatgcgcgc gccgtccatg atgcgggcct tttcagtgaa ttccaccgac gcgaaatagt
     2281 aacaagaacg gtgacgggtg acaagtcttg gaaaacagtg ccgagtgaca agtgttgaaa
     2341 gcagtgacca gtgacaagtg gcgagtgacg agataaactc ttgctccggc ttgtcacttg
     2401 tcactcgtca cttgtcactc tacgcctcca tcgtgcgtcc gattctgttt cgcctgccgg
     2461 cagagtcagc gcacgaattt gcgctgcgct cgttatccgc cgcgctgagc acaacggccg
     2521 caagaagatt tgccgaacgt cgatttcaaa gcgcgccatt cggcgagttg agacgtttcg
     2581 gtctgacatt tcgcaacccc gtcggtttgg cagcgggcct tgataagaat ggaacggccg
     2641 cgcaagcgct ggcggcgctt ggctttggat tcatcgaagt tggttcctgc acgaacgagg
     2701 cgcaaccagg aaatccgcgg cctcgtttgt ttcgtttgcc ccgcgatcga gcgctcatca
     2761 atcgagcggg cttcaacaat tgcggcgcgt cgcaattggc ggagaacatc aagcaacacc
     2821 ggcccgactg cattgtcggc gtcaacatcg gcaaatcgcg gagcgttcca atatcagagg
     2881 ctgtttccga ctacattgcc agcttcgaca cgatttacga tgtggccgat tacatcgcgg
     2941 tcaacgtcag ctcgccgaac acaccgaatc tgcgtgagtt gcaaagaccg caaatgctcg
     3001 gcgatttatt agagagattg caacggcgca atgatgaact cgcgcaacgt agttctctct
     3061 tgcagccaaa gcctctcctg atcaagattg cgccagactt gaatagatcc gagatcgaat
     3121 caatagttga ggtcgccttg cgcaacaaca ttgctggtat catcgcgacg aacacgacgg
     3181 tcaaccgcga aggtttgcta acatcgcagg aaaaggttga ggcttgcggc gaaggaggat
     3241 tgagtggagc gcctttgcaa aaccgatcga acgaagtcat tgcattgatt tatcgacgga
     3301 cacgcggcgc tttgccaatc atcggcgtag gcggtgtttt caccgctgtg gacgcgtggg
     3361 agaagattag ctctggagca agtctgattc aactgtacac gggtttcatt tatgagggcc
     3421 cgaacgtggc tcgacggata aatgaaggtc tcgctcagat tctgaagcgc gaagagtttc
     3481 agtcgcttga tgaagctgtg gggtgtagag cgaagtggag ttaaccgcag aggtcgcaga
     3541 gtttttccgc agagtttcgc agagagatag cgccactctg cgttcctctg cgagttcctc
     3601 agcgccctct gcgtttagaa aagcgactga caactacata atcccggctt gttatgcatg
     3661 ctgcaaaaga caaactgatc atcgcgctcg acgttgatac cgccgatcgt gccctcgatc
     3721 tcttcgacgc gttaagagaa gtcgcgggca tgttcaagat cggctcgcaa ctcttcaccg
     3781 cggcgggacc cgacatcgtc cgacaagtcg tcgcgaaggg cgggcgcgtc tttctcgatc
     3841 tgaaattcca tgacataccg aacacggtgg cggcggcggg aatcgaagcg actcggctcg
     3901 gcgtttcgat cttgaacgtc cacgcgagcg gcggcgcgga gatgatgaag cgcacggctg
     3961 aagctatcgc cgaaaccgcc gcacgcgaag ctttgtcgaa acctaaggtg atcgccgtca
     4021 cgatgttaac cagcctcgac gaggaatcac tgaaacggat cggaatcgag accgggccgc
     4081 gtcaactcgt aataaaactg gcgcgcgcgg cagcagattg cgggctcgac ggcgtggtt
//
LOCUS       DASZZE010000144         1761 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_200666, whole genome shotgun sequence.
ACCESSION   DASZZE010000144 DASZZE010000000
VERSION     DASZZE010000144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1761
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200666"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..606)
                     /locus_tag="VHD88_02905"
     CDS             complement(<1..606)
                     /locus_tag="VHD88_02905"
                     /inference="COORDINATES: protein motif:HMM:NF024803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HVS20767.1"
                     /translation="MTEKNRKVLSFPSPVPPKADYQRVKSSYSVREIKQLFGLSERTV
                     RRWTESGIIQGTPVADGADFTYDFQALTLFRRVREMRSQGLTIKQIEAELQGQLSLFR
                     PVGGQISRLLTPFEEALMLHEQGDAKAAEFYGEAISEGDNVAEAYCNLGIIDLDRGNS
                     IGALDNFTQSLKHDPRHVEAHYNLGNLYYDAGDFPLARLHYE"
     gene            complement(639..1517)
                     /locus_tag="VHD88_02910"
     CDS             complement(639..1517)
                     /locus_tag="VHD88_02910"
                     /inference="COORDINATES: protein motif:HMM:TIGR00765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HVS20768.1"
                     /translation="MISKDFLWCVWARADEDEIFGRSAQLSYYFLLALFPLLLFLITL
                     FGYFDGADSHLRHKLLSYLGDVMPSSASQLVIETIDQVTAARGGGKLSFGLLAAIWAA
                     SSGMNALGQSLNAAYDVRESRPWWKVRLISIALTFALSTLITSALVIVLYGGQLGDSL
                     AALIHEGSAFAVAWKILQWPIALAFVFITFALIYHFAPDLAAKRRQRRLSASDYRRRW
                     VSPGVLVAVALWLLVSLGFRLYLHFFNSYSATYGSLGAVISLMLWFYLTGAAILLGGE
                     INCELEAGEKPHKDSA"
     gene            complement(1546..>1761)
                     /gene="lepB"
                     /locus_tag="VHD88_02915"
     CDS             complement(1546..>1761)
                     /gene="lepB"
                     /locus_tag="VHD88_02915"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: protein motif:HMM:TIGR02227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HVS20769.1"
                     /translation="GKPARVPDNSYFVMGDDRDNSLDSRAWGFVPRDLIIGRAMFVYW
                     SFDETKDFGLANFFTQTRWSRTGTMVR"
BASE COUNT          427 a          513 c          502 g          319 t
ORIGIN      
        1 ttcgtaatgc aagcgcgcga gcggaaagtc gcccgcgtcg tagtagaggt tgccgaggtt
       61 gtagtgcgct tcgacgtgcc ggggatcgtg cttcaaagac tgcgtgaagt tgtcgagcgc
      121 gccaatcgaa ttgccccgat ccagatcgat gattcccagg ttgcagtacg cttccgcgac
      181 gttgtcgcct tccgaaatag cctcaccgta aaactcggcc gcctttgcgt cgccttgctc
      241 gtgcagcatg agggcctctt cgaagggtgt cagcaagcgc gagatttgtc cgccgacagg
      301 tcgaaacaaa cttagctgac cctggagttc ggcctcgatc tgcttgatcg tcaaaccctg
      361 cgagcgcatt tcgcgcacgc gccgaaagag cgtgagcgcc tgaaaatcgt aagtgaaatc
      421 tgcgccgtcc gcaaccggcg tgccctgaat gattccggat tcagtccagc gacgaacggt
      481 gcgttcgctc agaccaaaca gttgtttgat ctcgcgaacc gagtagctgg atttgacacg
      541 ttggtaatcc gcctttgggg gaacggggga cgggaacgag agaaccttgc gattcttttc
      601 agtcatgctc agggcatcag cctatcacga aaaagaacct acgcggaatc tttatgcggc
      661 ttttctccag cctcaagttc gcagttgatt tcgccgccca aaagaattgc cgcgcccgta
      721 agataaaacc acagcatcag actgatgacc gcgcccagcg agccatacgt cgcactgtac
      781 gaattgaaaa aatgcagata gagacgaaac ccgagcgaca ccagcagcca cagcgcgacg
      841 gccaccagaa ctcccggtga cacccagcgc cggcgatagt cggaagccga caagcgtcgc
      901 tggcggcgct tcgcggccag gtcgggagca aaatgataaa taagcgcgaa cgtgatgaag
      961 acaaaggcca gcgcgatcgg ccactgcaga attttccagg ctacggcgaa cgcgcttccc
     1021 tcgtggatca gcgcagcgag agaatcaccc agttgccctc cgtagagcac gatcaccaaa
     1081 gcggacgtga tcagagtcga tagcgcgaac gtcaaagcta tcgagatcaa tctaaccttc
     1141 caccagggcc ggctttcgcg cacatcataa gcggcgttca gcgactggcc cagcgcgttc
     1201 atcccgctgg aggccgccca gatcgccgcc agcaatccga atgacaactt gccgccgcca
     1261 cgcgcggcgg tgacttgatc gatcgtctcg atcacaagct gcgacgcgga agacggcatg
     1321 acatcgccca gataggaaag gagtttgtga cgaagatgcg agtccgcgcc gtcgaaataa
     1381 ccgaacaggg tgatcaggaa aagcaggagg ggaaacagcg ccagcaggaa ataataggac
     1441 aactgcgcgg agcgcccgaa gatttcatcc tcgtccgccc gggcccaaac gcaccagaga
     1501 aagtctttcg atatcaaacg gctggccaaa ggcgtttccg cgcagctatc tcaccatcgt
     1561 tccggtgcgg ctccagcgag tttgcgtgaa aaagttagcg aggccaaagt ctttggtttc
     1621 atcgaacgac cagtaaacga acatggcccg accaatgatc agatcgcgcg ggacgaatcc
     1681 ccaggcgcgg ctgtcgagac tgttgtcgcg atcgtcgccc atcacgaaat atgagttgtc
     1741 cgggactctg gccggcttgc c
//
LOCUS       DASZZE010000145         1914 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_4715, whole genome shotgun sequence.
ACCESSION   DASZZE010000145 DASZZE010000000
VERSION     DASZZE010000145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1914)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1914)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1914
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4715"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..799)
                     /gene="dprA"
                     /locus_tag="VHD88_02920"
     CDS             complement(<1..799)
                     /gene="dprA"
                     /locus_tag="VHD88_02920"
                     /inference="COORDINATES: protein motif:HMM:TIGR00732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009294 - DNA-mediated transformation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-processing protein DprA"
                     /protein_id="HVS20770.1"
                     /translation="MKDWIALNMTPGVGSRVTARLLEHFGSAEAIFDAPRRELALLRL
                     PLETVESIVSRELHARAETEIESVRKLGGDILVLDDGVYPALLRETYDPPVVLYVKGA
                     WAECLERPCVSIVGSRRCSTYGQNAALMLSRELAQRGVTIISGLARGIDAAAHRGALE
                     AGGRTVAVMGTGLDQVYPRDHKKLADQILNQSGALVTQFPLGTPPVSENFPYRNRVIS
                     GLSLGVVVVEAAENSGSLITARLAMEQNREVFAVPGNITSRNSFGTNY"
     gene            complement(902..1000)
                     /locus_tag="VHD88_02925"
     tRNA            complement(902..1000)
                     /locus_tag="VHD88_02925"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(964..966),aa:Sec,seq:tca)
     gene            1205..>1914
                     /locus_tag="VHD88_02930"
     CDS             1205..>1914
                     /locus_tag="VHD88_02930"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HVS20771.1"
                     /translation="MINFQTAPEHYKHWKLSIDGAVATLSMDVQEDQTLADGYKLKLN
                     SYDLGVDIELADAIQRLRFEHPEVRAVIITSLKPRIFCAGANIYMLGTSSHAFKVNFC
                     KFTNETRCAIEDDSRHSGRRYIAALNGTASGGGYELAIACDEIYLVDDGNSAVSLPEV
                     PLLGVLPGTGGLTRLVDKRKVRRDRADVFSTLAEGLKGKRAKEWGLIDDTFPTSKFQE
                     SVAARVSEVAQAVSLRGGG"
BASE COUNT          432 a          551 c          526 g          405 t
ORIGIN      
        1 gatagttcgt gccaaatgaa ttgcgcgaag tgatgttgcc cggcactgcg aagacttcgc
       61 ggttctgttc catcgccagg cgagcggtga tcaacgaccc ggaattctcg gctgcttcga
      121 ccacgaccac gcccagactc agtccgctga tcacgcgatt gcgatacgga aagttctcgg
      181 atacaggcgg agttccaagc ggaaactgcg tcaccaacgc gccgctttga ttcagaatct
      241 ggtcagcgag ctttttgtga tcgcgcggat acacttgatc cagcccagtg cccatcaccg
      301 ccaccgttcg tcctcccgct tcaagcgcgc cgcgatgcgc tgccgcatca atgcctcgcg
      361 caagtccgga aatgatcgtg acgccgcgct gcgccaactc acgcgacaac atcagcgccg
      421 cattctgacc ataagtcgag caacggcgcg aaccgacgat cgacacgcaa ggccgttcca
      481 gacattcggc ccatgcgcct ttcacgtaaa gaacaaccgg cgggtcgtaa gtctcgcgca
      541 gcagcgccgg ataaactccg tcgtcgagca ccagaatgtc gccgccgagt ttgcgcacgc
      601 tttcaatttc agtttcagca cgcgcgtgca attcgcgaga gacgatgctc tccaccgttt
      661 ccagaggcag tcttagcaag gcaagttcgc gccgcggcgc atcgaaaatc gcctccgccg
      721 atccgaagtg ttccagcaag cgggcagtta cgcgcgaccc aacgccggga gtcatgttaa
      781 gggcgatcca atctttcata agggcaagga tgaaggcgga aggatgaagg atgaaaccgt
      841 aaagcgcaag ccaaatcagc ggctttcatc cctcatcctt catccttcaa cattgcattt
      901 ctggcggagg cgtgtaggaa tcgaacctac ctgagcctgc tctcgcagtc tcactaacgg
      961 ttttgaagac cgcgccgttc accagaacag atgcgcctcc gtattttgaa tttcaaatct
     1021 cgaatccgga atactcttcg agttcgactc gagccagcgg ataaagaccc tacgcgtcgt
     1081 ctctatgggg agtcaagggc caagagcctc ggacggccgc cgctgcgctt gatatttgcc
     1141 aatcaattcc gctaaactca cgattcgaac gaacgttcga acggaaagct tcgaacggat
     1201 cggtatgatc aactttcaaa ctgctcctga acattacaag cactggaagc tgtcgataga
     1261 cggtgctgtg gcgacgcttt caatggatgt gcaggaggac caaacgctcg cggacggcta
     1321 caaactgaaa ctcaattcgt acgaccttgg cgtggacatc gaactcgccg acgcgattca
     1381 gcgtctgcgc tttgaacacc ctgaagttcg cgctgtaatc atcacgagtt taaagccgcg
     1441 aatcttttgc gccggcgcga acatctacat gcttggcaca tcgtcgcacg cgttcaaagt
     1501 caacttctgt aaatttacga acgaaactcg ctgtgcgatt gaagacgatt cgcgccattc
     1561 ggggcgtcgc tatatcgcgg cgctcaatgg aacggcttcg ggtggtggtt atgaactcgc
     1621 gatcgcttgc gatgagattt atctcgtgga cgacgggaac tctgctgttt cacttcccga
     1681 ggttcctttg ctcggcgtgc tgccaggcac tggcggtttg acgcgattgg ttgataagcg
     1741 aaaggtgcgc cgcgatcgcg cggatgtgtt ttcgacgctc gccgagggtt tgaaaggcaa
     1801 gcgcgcgaaa gagtggggac tcatcgacga cacgtttcca accagcaagt ttcaagagtc
     1861 agttgccgcc cgtgttagcg aggtggcgca agctgttagc ttgcgcggcg gcgg
//
LOCUS       DASZZE010000146         2145 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_149229, whole genome shotgun sequence.
ACCESSION   DASZZE010000146 DASZZE010000000
VERSION     DASZZE010000146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2145)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2145)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2145
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_149229"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(269..1417)
                     /locus_tag="VHD88_02935"
     CDS             complement(269..1417)
                     /locus_tag="VHD88_02935"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HVS20772.1"
                     /translation="MNSLREIIQASPSVRHLALASKAQADEPQPLAPTRWDWSNVNRV
                     LVVRLRSIGDTVLTTPSLFALRRFLPHAQIDILLEDWVAPVLNGSGLVDRVVTTPRES
                     KVARARVARELRAARYDVVYNLHGGTTATLLTRATGAKHRVGFEHYQYARLHNHVAPS
                     SLEIWQRPKLHSVEQQLALIGWTGVPVTDRPATKLAVTESALLAVSEKLRAAGVGDNG
                     ESIAVIHPTAAFETKQWATEKFARVAEELAARGLTPVAIVSPKEKQTAESLISQSSAR
                     VVGLSDLSLPEVTALASLARLFVGNDSGIAHIAAAAGAPCVVIFGSSNVAHWRPWTTQ
                     PNEVVLEEMPCQPCHGYFCAEFEKPECILRVPVERVVAGIDRVLRESK"
     gene            complement(1459..1653)
                     /locus_tag="VHD88_02940"
     CDS             complement(1459..1653)
                     /locus_tag="VHD88_02940"
                     /inference="COORDINATES: protein motif:HMM:NF015899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HVS20773.1"
                     /translation="MAISEQLLEILVCPACRAKVELKPDGSGLKCVECKRVYPIRDDI
                     PVMLIDEAKIEDEQEQNRER"
     gene            1757..>2145
                     /locus_tag="VHD88_02945"
     CDS             1757..>2145
                     /locus_tag="VHD88_02945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20774.1"
                     /translation="MALKIGSTIVEGLHAMMMEDFGPRVLSVWQDLRLTTRTLVQRAW
                     QTPSAGAIVQNSRSSPYDPRADFELSRLLAALDERAGEVAQSVADEPAERARRLADAC
                     ANMLTEQTQSAEVFAQLIQRAHSHKDYA"
BASE COUNT          469 a          628 c          592 g          456 t
ORIGIN      
        1 gacgtcgccc caaaggaatt cgtcgagcat cacgtcgcca agcacgacga tgttgcagtc
       61 gcgcatttgg cgagtgattt gctcagcgcg gtctttcgtt aatgacggcg gcatgactta
      121 gaagctacgg atttcacgca aaggcgcaaa gacgcaaagt catcgctgac aacattgtct
      181 gtcgcgtact tctcgattct tgatctgctc tttgcggctt tgcgcctttg cgtgaaatgc
      241 tttttagaaa cgactcaatt gcgaggagtc acttactctc tcgcagcaca cgatcgatcc
      301 ctgccacaac tcgctcaacc ggcacccgca gaatgcattc aggtttttca aactcggcgc
      361 agaaatagcc gtgacacggc tggcagggca tctcttccag cacgacttcg ttcggctgcg
      421 tcgtccacgg tcgccaatgc gcaacgttcg atgagccgaa gataacgacg cacggcgcgc
      481 cggcggcagc agcgatatgc gcaatgccgc tgtcgttgcc gacgaacaag cgagcgagcg
      541 aagccagcgc tgtcacttcg ggcaacgaaa gatcgcttaa tcctacaacg cgcgccgaag
      601 attgactgat gagcgattca gccgtctgtt tttccttcgg cgagacgatc gcgacgggcg
      661 ttagcccgcg cgccgccagt tcttccgcca cgcgcgcaaa tttctccgtc gcccactgct
      721 tagtttcgaa tgccgcggtg ggatgaatca ccgcgatcga ttcaccgtta tcaccaacgc
      781 cggcagcgcg aagtttttcg gaaactgcaa gcaaagcact ttcggtaact gccaacttcg
      841 tcgctggtcg atcagtcaca ggcacgcccg tccaaccaat caaggcaagt tgttgctcga
      901 ctgaatgcag tttcggtctt tgccaaatct ctaaagatga aggagcgacg tgattgtgca
      961 agcgcgcgta ctgataatgc tcaaacccta cgcgatgttt tgcgccggtc gcgcgcgtca
     1021 agagcgtcgc ggtcgtgccg ccgtgcaggt tataaacgac gtcgtagcgc gcggcccgaa
     1081 gttcacgagc tacacgagcg cgggcgactt tgctctcacg tggagtcgtg acgactcgat
     1141 cgactaagcc cgagccattg agtacaggcg caacccaatc ttccaacaga atgtcgatct
     1201 gcgcgtgagg caagaagcgt cgcagcgcaa acaacgatgg cgtggttaag acagtatcgc
     1261 caatcgagcg caggcgcacg accaaaacgc gattaacgtt cgaccagtcc cagcgcgtcg
     1321 gcgcgagcgg ctgcggctca tcggcctgtg ctttgctcgc aagagcgaga tggcgcacgc
     1381 tgggcgaggc ctggatgatt tcacgaagac tgttcattta ctgacttgat cgctgagggt
     1441 ttggttctga tccgctcgct accgctcgcg gttctgttcc tgttcatctt cgatcttcgc
     1501 ttcgtcgatc aacatcaccg gaatgtcgtc gcgaattgga tagacgcgtt tgcactcgac
     1561 gcacttcaaa ccgctgccgt caggtttcag ctcaaccttg gcgcggcacg ccgggcaaac
     1621 cagaatctca agcaactgtt cgctgatggc catggctcaa caacctctca atcaatctta
     1681 aatcgcattt caacgcgact aacgaagaga gcaagcttag cagcattgca ccatttgttg
     1741 tagggcatgt agtacaatgg ccctgaagat tggttcaacg atcgttgaag ggttgcacgc
     1801 gatgatgatg gaagattttg ggccgcgcgt attgagcgtt tggcaagact tgcgcttgac
     1861 cacccgcaca ctggttcagc gagcctggca gacgccatcc gccggtgcga tcgttcagaa
     1921 ctcgcgctca agcccatacg atccacgcgc ggacttcgag ttgagccgtt tgctggcggc
     1981 gctggacgag cgtgccggcg aagtggcgca atcggtggcc gacgaacccg ccgagcgagc
     2041 gcggcgcctc gctgacgctt gcgccaacat gcttaccgaa cagacgcaat cggcagaagt
     2101 ttttgctcaa ctcattcagc gcgctcactc gcacaaagat tacgc
//
LOCUS       DASZZE010000147         3261 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_215304, whole genome shotgun sequence.
ACCESSION   DASZZE010000147 DASZZE010000000
VERSION     DASZZE010000147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3261)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3261)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3261
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_215304"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            190..1383
                     /gene="sdhA"
                     /locus_tag="VHD88_02950"
                     /pseudo
     CDS             190..1383
                     /gene="sdhA"
                     /locus_tag="VHD88_02950"
                     /inference="COORDINATES: protein motif:HMM:NF013086.4"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase (quinone) flavoprotein
                     subunit"
     gene            1579..1980
                     /locus_tag="VHD88_02955"
     CDS             1579..1980
                     /locus_tag="VHD88_02955"
                     /inference="COORDINATES: protein motif:HMM:NF014907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20775.1"
                     /translation="MGKVMTDNVTVIRYNDRLKETDERLRQLLERYERISINDSNLWA
                     TMALPHARHLKNMMELARVITLGALNRNESRGAHYKPDFPNRDDANFLKTTIAEHSGE
                     GPVLSYDPVDVSLIKPRKRDYSHEKKETAKA"
     gene            2081..2503
                     /locus_tag="VHD88_02960"
     CDS             2081..2503
                     /locus_tag="VHD88_02960"
                     /inference="COORDINATES: protein motif:HMM:NF024485.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HVS20776.1"
                     /translation="MSDTVEIHIKRRANADSSQYWEEFEVPYRPNLNVISCLMEIRKN
                     PVTKSGKQTTPPSWDMNCLEQVCGICTMVINGRVRQSCSALVDNLDQPIKLEPMSKFP
                     NVRDLVVDRSDVRSPQTRSRLGGTRRHLRSWPRSPHGQ"
     gene            2493..2822
                     /locus_tag="VHD88_02965"
     CDS             2493..2822
                     /locus_tag="VHD88_02965"
                     /inference="COORDINATES: protein motif:HMM:NF024581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HVS20777.1"
                     /translation="MDNDDVLERYAYSRCMTCGCCLEACPQYEDDHYIGSQAIAQVRL
                     FNMHPTGQMNRDERIKAIMDKDGITNCGNAQNCVKVCPMNIPLTKAIYEENRETVVHG
                     LLGWLKK"
     gene            complement(2895..>3261)
                     /locus_tag="VHD88_02970"
     CDS             complement(2895..>3261)
                     /locus_tag="VHD88_02970"
                     /inference="COORDINATES: protein motif:HMM:NF014867.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20778.1"
                     /translation="CAGIPITELLSKEQIDAIVKRTAGAGAEIVNLLKTGSAYYAPSA
                     AAVEMTESILKDKKKILPCAAYLEGEYGVNGLYVGVPCKLGARGLEQVIEITLTAEER
                     IALQKSAAAVQELIDVLGI"
BASE COUNT          754 a          887 c          920 g          700 t
ORIGIN      
        1 gaatcaatgc ggcgattgcg ttcattcgtc ccggcggatt gctgagagga attctctagc
       61 gtgtccgaaa aagtcggcca cagaggcacg gagacacaga gattaaaagc gagcagttgg
      121 tttctttttc taatcttcct gatctgtttt atctctgagt ctcggtggct taattactga
      181 gagaagtcta tggctagcgg aatcaagatc gcgattgtgg gcggcggact ggcgggactg
      241 gcggcggcaa tgaaaattgc tgaagcgggc accgcggtcg atctgttttc agtcgtgccg
      301 gtcaagcgct cgcactcggt atgtgcgcag ggtggcatca atggcgccgt caacaccaaa
      361 ggcgaaggcg attcgacctg ggagcatttc gacgacacgg tttacggcgg agacttctta
      421 gcgaaccagc cgcccgcaaa agcaatgtgc gagatggcgc ccgcgatcat ttatctcttc
      481 gatcgcatgg gcgtgccttt ttcgcggacg aaggaaggcc tgctcgaatt tcgtcgcttt
      541 ggcggcacga aacatcatcg caccgcattt gccggagcct cgacgggaca gcaactcttg
      601 tacgcgcttg acgaacaagt gcggcgctac gaagtcgccg gcaaagttca aaagtacgaa
      661 ggctgggaga tgatgtcttt ggtgctcgac gatcatcaag tctgtcgcgg catcgtggca
      721 atgaatctgc gctcgctcga attgaaagcg tttcccgccg atgccgtcat catcgcgagc
      781 ggtggacccg gtttgatctt cggcaagtca acgaactcga tgcgggcagc gccgtttccc
      841 gcctgctatc aacagggcgc gaaatatgcg aacggagaat tcatccaggt tcatcccacg
      901 tcgattcccg gtgatgataa gctgcgtttg atgagcgagt cggcgcgcgg cgaaggcggt
      961 cgcgtttggg ttccgcgcgc gaaaggcgac aagcgatcgc cttcgtcaat tccagaacgt
     1021 gagcgctagt attgtctgga agagaagtat cccgcgtacg gcaaccttgt gccgcgcgac
     1081 atcgccacgc gcgaaatctt tcaggtttgt ctcgacgggt ctggcgtcaa cggcgagaac
     1141 caggtctatc tcgatctcac gcacataccc gccgaaactc ccgatcagaa gctcggcgct
     1201 atcctggaaa tctacgagat gttcgtcggc gacgatccgc gccacgtgcc gatgcgaatt
     1261 tttccgggcg ttcactattc gatgggcggg ctgtgggtcg atttcaatca acacacgaac
     1321 attcccggat tgctggccgc cggcgaatgt gattactcga ttcatggcgc gaaccgtttg
     1381 ggcgcgaatt cgctcgtgag ttgtgtttac ggcggctttg tcgccgcgcc ggcagcgatc
     1441 gacttcgcgc agaacgtcga gcggaacgga tctgaaggct caaaacttca cgaacaggaa
     1501 acgaaacggc agcaggaaat caacgacgca ctcatccagc agagcgggaa cgagaatcaa
     1561 tacaagctgc acgaagagat gggcaaggtg atgactgaca acgtcacagt catccgctac
     1621 aacgatcgct tgaaggaaac tgatgagcgg ctgcggcaat tgctggagcg ttacgaacga
     1681 atttcgatca atgattcgaa tctgtgggcg acgatggctt tgccgcacgc gcgacacttg
     1741 aagaacatga tggaactggc gcgggtgatc accctgggtg ctctcaatcg caacgaatcg
     1801 cgcggcgctc attacaaacc agactttcct aatcgcgacg atgcgaactt tctgaagacg
     1861 acgatcgccg aacattcagg cgagggtccc gtgctgtcgt acgaccctgt tgacgtgtca
     1921 ctgatcaagc cgcgcaagcg cgattattcg cacgagaaga aagaaacagc aaaagcatga
     1981 ttgccacaga gacacagagg cgcagagaaa tatcaaggtt ctttttgttt ctccatcgca
     2041 gtttgtctct gtgtctctgt gcctctgtgg cgaactaact atgagcgaca cagtcgagat
     2101 tcacatcaag cggcgcgcca acgccgactc ttcgcaatac tgggaagagt tcgaggttcc
     2161 gtatcgccca aacctcaacg tgatctcgtg cctgatggag attcgcaaga atccggtcac
     2221 gaagtccggc aagcagacga cgccgccatc ctgggacatg aactgtctcg aacaggtgtg
     2281 cgggatttgc acgatggtca ttaacggacg cgtgcggcaa tcgtgctcgg cgctggtcga
     2341 caatctcgat cagccgatca agctcgaacc gatgtcgaaa tttcccaacg tgcgcgatct
     2401 agtggtcgat cgctcagatg ttcgatcacc tcaaacgcgt tcacgcctgg gtggaactcg
     2461 acggcactta cgatcttggc cccggtcccc gcatggacaa tgacgacgtg ctggagcgtt
     2521 acgcttactc gcgctgcatg acctgcggtt gttgtctcga agcttgcccg cagtacgaag
     2581 acgatcacta catcggatcg caagcgattg cgcaggttcg cctcttcaac atgcatccca
     2641 ccggccagat gaatcgtgac gaaagaatca aagccattat ggacaaggac ggcatcacca
     2701 actgcggcaa cgcgcagaac tgcgtgaagg tctgtccgat gaacatccct ctgacgaaag
     2761 cgatctatga agagaaccgc gagacagttg tgcacggttt gctgggatgg ttgaagaagt
     2821 gagccacaga tgaacgcgga ttcgcacaga tcactttaag ttcctatctg tgagagcggc
     2881 gtctatctgt ggcattagat ccccaagacg tcgattagtt cctggaccgc cgccgcgctc
     2941 ttttgcaaag cgatgcgctc ttcagcggtc aacgtgatct cgatcacttg ttccaatccg
     3001 cgcgcgccga gcttgcacgg cacgccgacg taaagtccat tgacgccata ctcgccttcc
     3061 agataagccg cgcacggcag aatctttttc ttgtctttca aaatcgattc cgtcatctcc
     3121 accgccgcag cagacggcgc gtagtaagct gaacccgttt tcaagagatt cacaatttca
     3181 gcgccggcgc cagcggttcg cttcacgatg gcgtcaatct gttctttcga aagaagttcc
     3241 gtgattggaa tcccagcgca g
//
LOCUS       DASZZE010000148         8410 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_21185, whole genome shotgun sequence.
ACCESSION   DASZZE010000148 DASZZE010000000
VERSION     DASZZE010000148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8410)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8410)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8410
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21185"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..339)
                     /locus_tag="VHD88_02975"
     CDS             complement(<1..339)
                     /locus_tag="VHD88_02975"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024968.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HVS20779.1"
                     /translation="MKPNVLFIIDSFEQGGSERQALQLLRQLHQSEQCRVHLACLQNR
                     GSLRAEVDQLGLGEIHEYPLTSFYDRNFVTQLRRLGHFIKENNIDVVHTHCFYTNIFG
                     MTGAALTRVRA"
     gene            complement(352..1506)
                     /locus_tag="VHD88_02980"
     CDS             complement(352..1506)
                     /locus_tag="VHD88_02980"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HVS20780.1"
                     /translation="MSLRFAAEIVFWLSASALIYTYAGYPLLLALVSTLRPRKVKRVE
                     FEPTVTIIITAYNEERALAAKLENTLALDYPRELLEIIVASDCSTDRTDEIARAFRTR
                     GVRLHRQPQRLGKTAAQNAAVEQARGEIILFSDATSHYQTDAMRAVMPNFADATVGCV
                     AGRLIYVDPSDSRVGRGALSYWSYETFLKRHESRACSLIGASGCLYAVRRSAYVPLYH
                     EACSDFIIATKMVEQDLRAVYEPDAVCSEETNRRADKEMKMRVRVIAQTFTDLWAHRA
                     MLNPFRSGFYAVQLLSHKVMRYFVPFFLIAIFAASLALANTSPFYRVMFAAQLSCYAC
                     AALALMLDRVGVRSRWLAFPQYFVLANVASLIALYKFLRGERYAHWEPIR"
     gene            complement(1503..2900)
                     /locus_tag="VHD88_02985"
     CDS             complement(1503..2900)
                     /locus_tag="VHD88_02985"
                     /inference="COORDINATES: protein motif:HMM:NF016800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HVS20781.1"
                     /translation="MAAKAHNVHANDSKEKPASDAAPNNQKSPATFLKPGHALSYAAF
                     FIFTVILYARPGEFYPSPLTASIALIVALATLCFFIPTQLSLEGTLTARPREVNLVLL
                     FCLTGLLSIPLAISRTEAWHEFSGTFIRCIVMFLVIVNVVRTEARLKGMLFLALVSSV
                     WLSVEAINDYRLGLMTVEGYRASGTGSGIFGNTNDMALHVVTILPISIALLFGSRGIV
                     RKLFFGACAALMVAAIVLSYSRGAFIGMIVVSIFIALKLGRGHRLEIVLAVLGVAAAI
                     ILLAPDKYGGRLLSIFFPSLDPAGSANARRGELFRSINVALHHPLLGIGMGNYQPEMS
                     FKGLVTHNSYTQVAAEMGTAALVCYTMFIVTPLRKLARIARETFEARGNSRFYYMALG
                     LQASLLAYMVSSFFLSVAYSWYVFYLVGYAVCLRRLYESEAGKVVVVEKRKERKRSEI
                     RSASVIENAGGAVTA"
     gene            complement(3100..4290)
                     /locus_tag="VHD88_02990"
     CDS             complement(3100..4290)
                     /locus_tag="VHD88_02990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20782.1"
                     /translation="MKSITQKTTPDSTVNVAREVSRAGRSASERSARAGHWVESLRNS
                     DVNRLWAELHRIVSHHPLVRASRSAGLLIEEGATSAYTDLTQELFVQLLTKSRFQHYL
                     DTAMTDAEIECEIGQIELTNLLTAELRKRHPESYRLARRISTLIQSSANFRRFDNNGN
                     SEEHHRRLADRVYGLSEWPASKLGRSSHEMEQRAHMIAVRQRDTRMVGCTGDAQIIIS
                     NSDLEDLIVSVLDAIDSPADVRTLRSLTMSRLPVMDIYLVPLGGDDGNSDGPYFDPAD
                     LRENPEQTLLRQESEREAAGFVDGFLKNLRANVRGKVKQYNRMLGVLWHCYLSPDHAT
                     QLEVAASLGVSDSLVSDYRRRIEQELRALSFTEVEEARMFELALRERVRSLVPVGEDE
                     GVVI"
     gene            complement(5144..6433)
                     /locus_tag="VHD88_02995"
     CDS             complement(5144..6433)
                     /locus_tag="VHD88_02995"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HVS20783.1"
                     /translation="MSRSGFLFGVISAATAALLIAVAYSSGTSRWFVIAALALLIGLV
                     VGLLLGRHATATREPRVHNQEILLSDAGIIDFSPKLLDATINEMREGLLVIDQEMRVV
                     ASNRAARSLFANIEDSIGARRLTELTRNPAIYDAFLDAVRGKERAGVKVETYGSGRRV
                     FDLRVVPLQSANGKGAHGAVGVFFDITRLERLELIRQEFLSNVSHELRTPLTSIIALA
                     ETLETGAIDDPEHNRRFLTIIQKNAARMHRLIDDILELSAIEAGNVKVKPECVQLYPL
                     VEDVIGSLSAAVAARAVTLHNLAPQDAKVFADPHRLVQMLTNLIDNAIKFNREGGTVS
                     VKYERGARDQIIVEDTGEGIPAHHLDRLFERFYRVDRARSRELGGTGLGLAIVKHLAR
                     AHGGEVTVESHFGEGTQFTIELPRNLAAENVDDSSLN"
     gene            complement(6426..7148)
                     /locus_tag="VHD88_03000"
     CDS             complement(6426..7148)
                     /locus_tag="VHD88_03000"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HVS20784.1"
                     /translation="MPRPALIIEDDPDIAESVRYNLESEGFTAIVASTGEQGLEMALD
                     AQNPPIVIVLDLMLPGISGMELCRRLRRENQTRRTPIIMLTAKTSEADRVAGLDLGAD
                     DYIAKPFSVRELVARVRAVLRRVDDDAVEHYDDGRIAIDFGDIRVLCDGANVKLTNKE
                     FTLLSVLAKRSGRVVTRQQLLDQVWGYSYYGDARTLDVHIRRLRQKLGACGDCIETVV
                     GLGYRFVGCASNYATVKSMADE"
     gene            complement(7214..8272)
                     /locus_tag="VHD88_03005"
     CDS             complement(7214..8272)
                     /locus_tag="VHD88_03005"
                     /inference="COORDINATES: protein motif:HMM:NF013543.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HVS20785.1"
                     /translation="MSATLIIAAAIVLVALVFDFTNGFHDAANSIATVVSTRVLSPRA
                     AVIWAAVFNFVAFAIFGTRVAKTIGGDLVRIDLISQDLRLYVLCAGLLGAIGWNLVTW
                     YLGLPTSSSHALVGGYAGAAIVAYRGFKGLLKPEGWIKTLIFIVASPVIGFVLGFIIM
                     LAVYWIFQRATPARVDKTFRRGQLLSAAAYSLGHGGNDAQKTMGIVTVVLATAGMFNL
                     HLGDKGSLPAIPLYVVLAAHAAIALGTLSGGWRIVHTMGSKITKLRPVGGFCAETAGA
                     ITLFGATMAGIPVSTTHTITGAIAGVGSTTRLSAVKWRVAGRIVWAWVLTIPAAAVFA
                     SISFLLIQLIDVIVRSLR"
BASE COUNT         1964 a         2383 c         2324 g         1739 t
ORIGIN      
        1 cgcgcggacg cgcgtcagcg ccgcgccggt cataccgaaa atgtttgtgt aaaagcagtg
       61 cgtgtgcacg acatcgatgt tgttctcttt gatgaagtga ccaagccggc gaagctgtgt
      121 gacgaagttg cgatcgtaaa agctcgtgag tggatattcg tgaatttctc cgaggccaag
      181 ttgatctacc tcagcgcgca gcgagccgcg gttttgcaga caagcgagat gaacgcggca
      241 ctgctcgctt tgatgtagtt gtcgcaaaag ctgaagcgcc tggcgctcgc ttccgccctg
      301 ctcgaaacta tcgatgatga ataaaacgtt tggcttcatc gaactggcac gctatcgaat
      361 cggctcccaa tgtgcatagc gctcgccgcg tagaaatttg tatagagcaa tgagcgacgc
      421 gacgtttgcg agcacgaaat actgtggaaa cgcgagccaa cggctgcgta cgccgacgcg
      481 atcaagcatc aacgccagcg ccgcgcacgc gtaacaacta agctgcgccg cgaacatgac
      541 tcgatagaaa ggcgaagtgt tcgcgagcgc gagagacgcc gcgaagatcg caatcagaaa
      601 gaacggcacg aagtaacgca tgaccttgtg tgaaagaagc tgcacggcat agaagccgct
      661 gcgaaaagga ttgagcatcg cgcgatgcgc ccaaaggtcc gtgaatgttt gcgcgatgac
      721 gcggacgcgc attttcattt ctttgtcggc gcgccgattc gtttcttctg aacagacagc
      781 atcaggttca taaacggctc gcaagtcctg ttcaaccatc ttcgtcgcga tgatgaagtc
      841 gctgcaggct tcgtgataga gcgggacgta agccgaccgg cgcacggcat agagacatcc
      901 cgacgcgccg atcaacgaac acgcgcgact ctcgtgtcgc ttcaaaaaag tttcgtagct
      961 ccagtacgag agcgcgccgc ggccgacgcg agaatcggac ggatcaacgt aaatcagacg
     1021 accggcgaca caaccaacgg tcgcgtcggc aaagttcggc atcaccgcgc gcatcgcgtc
     1081 agtctgataa tggctcgtag cgtctgagaa aagaatgatc tcaccgcgcg cttgctcaac
     1141 cgcagcgttc tgggccgcgg tcttgcccaa tcgctgaggc tgacgatgaa gccgcacgcc
     1201 tcgcgttcta aatgcgcgcg cgatctcgtc agtgcgatcc gtcgaacaat ccgaagccac
     1261 gattatctca agcaactcgc gcgggtaatc gagagccaaa gtgttttcga gtttcgctgc
     1321 gagtgcgcgc tcttcgttgt aagcagtgat gatgattgtc acggttggtt cgaattcgac
     1381 gcgcttcacc ttgcggggtc gcaacgtgct taccaaagcg agcaacagcg ggtaaccggc
     1441 gtaggtgtag atgagcgccg acgcgctcaa ccaaaaaact atctctgccg caaatctcaa
     1501 actcatgcgg ttacggctcc acccgcgttc tcgatcaccg aagcgctgcg aatctcgctt
     1561 cgctttcgct cctttcgctt ttccacgacg accactttcc cagcttcgga ttcatagagg
     1621 cggcgcagac agacggcgta gcccaccaga taaaagacgt accaactgta ggcgactgaa
     1681 agaaagaagc tagacaccat gtaagcgagc agcgacgctt gcagacctaa cgccatgtag
     1741 tagaaacgcg aattgccgcg tgcttcgaag gtttcgcgcg ctatccgcgc caatttcctg
     1801 agcggcgtca cgatgaacat cgtgtagcac acgagcgccg cagtgcccat ctctgcggcg
     1861 acctgcgtgt atgagttgtg agtcaccagc cccttgaatg acatttccgg ctggtagttt
     1921 cccattccaa tgcccagcaa tgggtggtgg agcgcaacgt tgatggacct gaaaagctct
     1981 ccgcgccggg cgttagccga gccggccgga tcgagactgg gaaaaaagat cgatagcaaa
     2041 cgaccgccgt atttgtcagg agcaagcaag atgatcgccg cggcaacacc cagaaccgcg
     2101 agcacaatct caagccggtg gccgcgccca agtttcagcg cgatgaaaat agagacgacg
     2161 atcatgccga tgaacgctcc gcgcgaatac gaaagcacga tcgccgcaac catcaaagcc
     2221 gcgcacgcgc caaagaaaag ttttcgcacg atgccgcgcg agccaaacaa gagcgcgatc
     2281 gaaatcggca ggatcgtgac cacgtgcagc gccatatcat tcgtattgcc gaaaatgcca
     2341 ctgccggtgc cgctggctcg ataaccttcg actgtcatca acccgaggcg atagtcgttg
     2401 atcgcttcga cgctcaacca gacgctggac accagcgcga gaaacagcat tcccttcaat
     2461 cgtgcttcag tccgcacgac attgacgatg accaagaaca tgacaatgca gcggatgaaa
     2521 gtgccactga actcatgcca ggcttcggtg cggctgatcg ccagcggaat cgaaagcagt
     2581 ccagtcaggc aaaatagcag gacaagattc acttcgcgcg gacgcgcggt cagcgttcct
     2641 tccaacgaaa gctgtgtggg tatgaaaaag cacaacgtgg ccagcgcgac gatgagagcg
     2701 atcgaagcag tcagcggaga cggataaaac tcacccggcc gcgcgtagag aatgaccgtg
     2761 aaaatgaaga aggccgcgta agacagagca tggccgggct tcagaaatgt ggcaggagat
     2821 ttctgattgt tcggtgctgc atcactcgcc ggcttttcct tgctatcatt cgcgtgaaca
     2881 ttgtgggctt tggcagccaa gtcttcgact gcgcaattgg attcgaaagc gtgcttccgg
     2941 cgtgaacgag tcaccggctg gtaatcattc tgtggactac gcctcaacat gtctgcgact
     3001 ctgtgacctt cggcttgcgg ccatcaaaac agcgaaaagc gcaggacacc tgcgcttctc
     3061 aagaattcga tcggcttaca aagtcgtgta accctggaat caaattacca cgccttcgtc
     3121 ttcgccaact ggaaccagac tgcgtacgcg ctcacgcagg gccaactcaa acatgcgcgc
     3181 ttcttccact tcggtaaacg aaagcgcgcg caactcttgc tcaatgcggc gccgatagtc
     3241 ggacaccaaa gaatcagaaa cgcctaatga ggcggctact tccagttgcg tggcgtggtc
     3301 agggctcaaa taacagtgcc acaaaactcc cagcatgcgg ttgtactgct tgacctttcc
     3361 gcggacgttc gcgcgcaggt tctttaagaa cccgtccacg aaacccgcgg cttcgcgttc
     3421 ggattcctgc cgcaacagag tctgttccgg attctcgcgc aggtcggccg gatcgaaata
     3481 agggccgtca gagttgccat cgtcgccgcc cagcgggacg agataaatat ccatcaccgg
     3541 aagtcgcgac atggtcaggc tgcgcaacgt gcgcacgtca gcgggcgaat cgatggcgtc
     3601 gagcactgaa acgatcaggt cttccagatc cgagttgctg attatgatct gggcgtcgcc
     3661 ggtgcatccg accatgcgcg tgtcgcgctg gcgaaccgca atcatgtgcg cgcgctgttc
     3721 catttcatgt gagctgcgac cgagtttgct ggccggccac tcactcagtc cgtaaactcg
     3781 atcagccagg cggcgatggt gctcttcgga attaccattg ttgtcaaagc ggcgaaagtt
     3841 cgcgctcgat tgaatcaaag ttgagatgcg acgcgcgaga cggtaacttt cggggtggcg
     3901 cttgcgaagt tctgccgtga gcagattagt caactcaatc tgaccaatct cgcattcgat
     3961 ctccgcgtca gtcatcgcgg tgtcgaggta atgctgaaag cgtgacttcg tcagcaactg
     4021 aacgaacagt tcctgtgtga gatcggtgta agcgctggtc gctccctctt caatcagcag
     4081 accggcgctg cgcgaagcgc gcaccagcgg atggtggctg acaatgcggt ggagttcagc
     4141 ccacaagcgg ttgacgtcag agttgcgcag gctttcgacc cagtgtcccg ccctggcgct
     4201 tcgctctgag gctgagcggc ccgcacgcga cacttcgcgc gcgacattaa ccgtagaatc
     4261 tggcgttgtc ttttgagtga ttgatttcac gacgtataag gtgctaatcc cgatcagatg
     4321 agcgcggatg cgtgaactag ttggcggcta gttgggtgat cgaaaacgat cactgaaatc
     4381 cttaacattt tccttcgtgt ttttcccgat ggtctgcggt gaagatcttg ggagacttgc
     4441 aggggcaact ttctaacttg attgaaggca atgccatcga aaaccgttca tcgacacggc
     4501 atagctcttc ttcttatttt ttcaatcccg gaaaggtggt tcttgttccc cggcttcttc
     4561 ggccgggaca aatcgcggga aatgcggata gatgaacgcc gtaaacctca ctgcggccac
     4621 cgaagaaggg agtcaaggag taaagcactc ctcgatcaac ctaaaggcat cttaacagct
     4681 attttgtaat tgagcaacat ttttttacac tgaccgtaag tcgttgatta gcctatgaaa
     4741 aggaggcttt aggtgtcggc agaaaaatgg aaaaccagga gcattaaagc tttcccgcaa
     4801 atgcccaacg gcccattgta gattgggtca aagaagaatc tatgccttcg tcactcgcga
     4861 gtgtgttccg taagagagct agttgccctt cgtctcaaag tctgcttgcc tatcatcggc
     4921 gtcatggctt cgaaccgacg gcgcacatcg aagcccatct ggcgttctgc gacttctgca
     4981 atgccgaact ccaactcttg actcgccatc atgacaactt cgatgagtac tcactcgtcg
     5041 agatgcccac tcaacttcgc aggctggctg aaagcttatt gaagagaagc gccgtgcctt
     5101 tgagagcgtt ttcggaactc gagaggaatc accagacgtg agatcaattc agcgaagagt
     5161 catccacgtt ttcggcagca agatttcgag gtagctcgat cgtaaattgc gtgccctcgc
     5221 caaagtgcga ctcgactgtt acctcgccgc cgtgcgctct tgccaggtgc ttgactattg
     5281 ccagccctaa accggttccc ccgagttcgc gcgagcgggc tcggtccacg cgatagaatc
     5341 gttcgaacaa acgatcaagg tgatgcgccg gaattccttc gccggtatct tcgacgatga
     5401 tctgatcgcg cgcacctctt tcgtacttaa ctgaaaccgt gccgccctct cgattgaact
     5461 tgatggcatt gtcgatcaga ttcgtaagca tttgcaccag gcggtgcgga tcggcgaaaa
     5521 ctttcgcgtc ttgcggcgcg aggttgtgca gcgtaaccgc gcgggccgca acggcggcgg
     5581 acaaacttcc gatgacgtct tcaaccagcg gatacagttg cacgcactct ggcttcacct
     5641 tcacgttccc tgcttcgatc gcgcttaact ccagaatgtc atcgatcagc cggtgcatcc
     5701 gtgcggcatt cttctgaatg atcgtaagaa accgacgatt gtgttcaggg tcatcgatcg
     5761 cgcccgtttc aagtgtctcg gccagcgcga tgatcgaggt caacggagta cgcaactcgt
     5821 gcgaaacgtt cgagagaaac tcttgtctga tcagctccag gcgctcgagc cgcgtgatgt
     5881 cgaagaacac accgacggcg ccgtgcgcgc ctttgccatt tgccgactgc aacggcacga
     5941 ctcgaaggtc gaagactcga cggccactgc cgtaggtttc aactttaact ccggcgcgtt
     6001 ccttgccacg aactgcgtcg agaaacgcat cgtaaatcgc cgggttgcgc gtcagctcag
     6061 ttagccggcg ggcaccgatc gaatcttcaa tgtttgcaaa gaggctgcgc gctgctcggt
     6121 tagaagcgac tacgcgcatc tcctgatcga tcaccagcag accctcgcgc atttcgttga
     6181 tggtggcgtc gagcagctta ggcgagaagt caataattcc cgcgtcactc aagagaattt
     6241 cctggttgtg tacgcgaggt tcgcgcgtcg ctgtcgcgtg ccttcccagc agcagaccaa
     6301 cgaccagtcc tatcaacagc gccaacgccg cgatcacaaa ccagcgcgat gttccggaag
     6361 agtaggcaac cgctatgagc agcgctgcgg tcgctgcact gatcacgccg aaaagaaaac
     6421 cagacctact catccgccat gctcttgaca gtcgcgtagt tcgaagcaca tccgacgaag
     6481 cgatagccga ggcccacgac cgtctcgatg caatcgccgc aggcgccaag tttctgtcgc
     6541 aagcggcgga tgtgcacgtc caatgttcgc gcgtcgccgt agtagctgta tccccaaact
     6601 tgatccagca actgctgtcg cgtaactact cggccagagc gcttcgccag cactgaaaga
     6661 agcgtgaact ctttgttggt tagcttaacg tttgcgccgt cgcagaggac gcgtatatcg
     6721 ccaaagtcta tcgcgatgcg accgtcgtcg taatgttcca ccgcgtcgtc gtcaactcgg
     6781 cgaagcacgg cgcggacgcg tgcgaccagt tcgcggactg agaacggctt ggcgatgtag
     6841 tcgtcagcgc cgagatcgag tccggcaact cggtccgctt ccgaagtctt cgcggtcagc
     6901 atgataatcg gcgtgcggcg agtttgattt tcgcgacgca agcggcggca caactccatg
     6961 ccactgatac cggggagcat tagatcaaga acgatgacta tcggcggatt ctgtgcatcc
     7021 agagccatct caagtccctg ctcgcctgtg gacgcaacga tcgcggtgaa accttcggac
     7081 tcgagattgt atctcacgct ctcggcgata tccggatcgt cttcgatgat tagggcgggt
     7141 cttggcatga acgcgtgtat acctttggtc cttgccggag ttgcgggtca gagcttcgga
     7201 tcgcgcatga actctagcgc aggctcctaa caatcacgtc gatcagttga atcaacaaaa
     7261 atgaaatact ggcgaatacg gcggccgctg gaatcgtcag cacccatgcc caaacaattc
     7321 ttccggcgac gcgccacttg acggccgaca gacgcgtggt cgatccaacg ccggcgattg
     7381 cgcccgtgat cgtgtgcgtt gtggataccg ggatgcccgc cattgtcgcg ccgaacaaag
     7441 taatcgcacc cgcagtctcg gcacagaagc cacctactgg gcgtagcttc gtaatcttcg
     7501 aacccatcgt atgcacgatg cgccaaccgc cagagagtgt gcccaaagcg atagcggcgt
     7561 gcgccgcaag caccacgtac aagggaatcg ccggcagcga acctttgtcg cccagatgca
     7621 aattaaacat tccggcagtc gccaggacca cggtcactat gcccatagtt ttttgcgcgt
     7681 cgtttccgcc gtggcccaac gagtaagcgg cagccgacaa aagctggccg cggcggaatg
     7741 ttttgtccac ccgtgccggt gtcgcccgct gaaaaatcca atagaccgca agcatgatta
     7801 tgaacccgag tacaaatccg atcaccggcg aagcgacgat gaagatcagt gttttgatcc
     7861 agccttcggg cttcaacaat cccttaaatc cgcgatacgc gacaatcgcc gcgcccgcgt
     7921 agccgccgac cagagcgtgc gaactcgacg ttggcaggcc caaataccac gtgaccaaat
     7981 tccagccgat cgcgcccaac agtccggcgc acaagacata gagtcgaagg tcttgactaa
     8041 ttagatcgat gcgcaccaga tcgccgccga tcgttttggc gacgcgcgtg ccaaagatag
     8101 cgaaggccac gaaattgaaa acggctgccc aaattaccgc ggcgcgcggc gaaagtacgc
     8161 gggtggaaac tactgtggcg attgaattgg cggcgtcgtg aaagccgttg gtgaaatcga
     8221 aaaccagagc gacgaggact atggcagcgg cgatgattaa ggtcgcggac atttagttga
     8281 agttaggatc gctttggtga aacttgctca agtgtttttg atcgcgattc gctccacgag
     8341 gtcgccaatg ttttggcagc ggtcaacggc agcttccaaa tcctcatata tatctttgag
     8401 aacgagtatg
//
LOCUS       DASZZE010000149         1625 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_314460, whole genome shotgun sequence.
ACCESSION   DASZZE010000149 DASZZE010000000
VERSION     DASZZE010000149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1625)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1625)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1625
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_314460"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            174..>1625
                     /locus_tag="VHD88_03010"
     CDS             174..>1625
                     /locus_tag="VHD88_03010"
                     /EC_number="1.5.1.20"
                     /EC_number="2.1.1.10"
                     /inference="COORDINATES: protein motif:HMM:NF006396.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional homocysteine
                     S-methyltransferase/methylenetetrahydrofolate reductase"
                     /protein_id="HVS20786.1"
                     /translation="MRNFRELLDGDGIHVFDGAMGTMLYERGVYINRCYDELNLTLPD
                     LVRGIHVDYVRAGADVIETNTFGATAPKLSQYGLEGSLRDINIAAARVAREAAGDQAY
                     VAGAIGPLGLRIEPLGPTSFDEARDLFKEQAGALLEGGVDLFVLETFSDLSEIQQAIR
                     GIRELCDLPIIAQIALYTDGNTAYGTTPEVFTEKLDQYGADVIGLNCGVGPAIILAAL
                     EKMRGVTSKKLSAQPNAGLPRDVQGRQFYMCSPEYMSKFAKRFIQAGAKFIGGCCGTT
                     PAHIKFISDAVRAASPRAQRVFISSEAPPQLDEKLTPTDVSVTPPEERSQWSRKITLG
                     EFVTSVEVLPPKGCDSQKTLDSIRLLKDAGVDGVNIPDGARAQSRMSAMATAVLVEQQ
                     IGIESVLHYCCRDRNLLGMMSDLLGAAALGLRNLLLITGDPPKMGPYPDATAVFDIDA
                     IGLTNMVNKLNHGLDLGNNPTGKPTAFSIGVGVN"
BASE COUNT          348 a          463 c          469 g          345 t
ORIGIN      
        1 gaaccgaaaa acttcagatg aattgaagtc ccgcactgtt tagcgcggga cgttttattt
       61 ttgattgcag atttttgatt tttgattgct cttttgtatc gcgttcttgc ggtggcacag
      121 gcgacccata gagtacaatc gcaaatctaa aatctaaaat ccaaaattcg ctaatgcgta
      181 acttcagaga actactagac ggagacggca tccacgtctt tgatggggcg atgggcacga
      241 tgctctacga gcggggcgtc tacatcaatc gctgttacga tgaactgaac ctcacccttc
      301 ccgatctcgt gcgcggcatt catgtcgatt acgtgcgcgc cggcgccgac gtgatcgaga
      361 caaatacgtt cggcgcgacc gcgccaaagt tgtcccagta tggccttgaa ggcagcctgc
      421 gtgatatcaa catcgccgcc gcgcgcgtgg cccgcgaagc tgcgggcgat caggcttacg
      481 tagcaggcgc gatcggcccg ctgggcctgc gcatcgaacc tttaggtccg acctcgtttg
      541 acgaagccag agacttgttc aaggagcagg ccggcgcttt gctcgaaggc ggtgtcgatc
      601 tcttcgtcct cgaaacattc tccgatcttt cagagataca gcaagccatt cgcggcattc
      661 gtgaattgtg cgacctgccg atcatagcgc agattgccct gtatacggac ggcaatactg
      721 cctatggaac tacgccggaa gtcttcactg aaaaactgga tcagtacggc gcggacgtga
      781 tcggcctgaa ctgcggcgtt ggtcccgcga ttatcctggc ggcgctggaa aagatgcgcg
      841 gcgtgacgtc gaagaaactt tccgcgcaac ctaacgccgg actgccgcgc gatgtgcagg
      901 gacgacagtt ctacatgtgc tcgcctgagt acatgtcaaa gtttgccaag cgcttcattc
      961 aagcgggcgc aaaattcatc ggcgggtgtt gcggcaccac gcctgcgcac atcaagttca
     1021 tcagcgacgc agtgcgggcc gcgtcaccgc gagcgcaaag ggtctttatc tcgagcgagg
     1081 cgccgccgca actcgatgag aaactcaccc cgacggatgt cagcgttact cctccggagg
     1141 aacgttctca gtggtcgcgc aagatcacgc tgggcgaatt cgtcacctca gtcgaggtgc
     1201 tgccgccaaa aggctgcgac tctcagaaga ccctggattc gatcaggctt ttgaaggacg
     1261 ccggcgtcga tggcgtcaac attcccgacg gcgcgcgcgc acagtcgcgc atgagtgcga
     1321 tggccacggc ggtgctggtc gagcaacaga tcggcattga atcagtcctg cactactgtt
     1381 gccgggatcg aaatctactc ggcatgatgt cggacttgtt gggagcggcg gcgctcggtt
     1441 tgcgcaacct gctcctgatt accggcgatc cgccgaagat ggggccttac cccgacgcca
     1501 ctgccgtgtt cgacatcgat gcgattggtc tgacgaacat ggtcaataag ctgaaccacg
     1561 gtctggatct cggcaacaac ccaaccggca agccgaccgc gttctcgatc ggggtcggcg
     1621 ttaat
//
LOCUS       DASZZE010000150         4867 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_149308, whole genome shotgun sequence.
ACCESSION   DASZZE010000150 DASZZE010000000
VERSION     DASZZE010000150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4867)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4867)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4867
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_149308"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1218)
                     /gene="glyA"
                     /locus_tag="VHD88_03015"
     CDS             complement(<1..1218)
                     /gene="glyA"
                     /locus_tag="VHD88_03015"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: protein motif:HMM:NF000586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004372 - glycine hydroxymethyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0070905 - serine binding [Evidence IEA];
                     GO_process: GO:0019264 - glycine biosynthetic process from
                     serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HVS20787.1"
                     /translation="MSNPFNARLAEVDPLIANAIDNEVARQANGLELIASENFVSEAV
                     LEAAGSVFTNKYAEGYPGKRYYGGCEWTDVVEQAAIDRAKELFGAEHANVQPHSGSQA
                     NMSVYLAALNYGDTILGMNLSHGGHLTHGHPLNFSGFSYKVADYGVSRETETIDYDEL
                     QRIAEEHKPKLIVCGASAYPRIIDFKRISEISRGIGARMFADIAHIAGPIVAGLHPSP
                     VPVADYVTTTTHKTLRGPRGGLILCKEEHAKEIDRRVFPGVQGGPLVHIIAAKAVAFG
                     EALRDDFKEYQRQILANAKALCSELQEQGLRIVSGGTDNHLMLVDVWMDGKGITGKVA
                     EKALEAANITANKNTIPFDQNKPFVASGLRIGTPAVTTRGMKEPEMREIGRLIAAIVH
                     EPESDEVRRNVQEG"
     gene            complement(1341..1805)
                     /gene="rpiB"
                     /locus_tag="VHD88_03020"
     CDS             complement(1341..1805)
                     /gene="rpiB"
                     /locus_tag="VHD88_03020"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: protein motif:HMM:NF004051.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004751 - ribose-5-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009052 - pentose-phosphate shunt,
                     non-oxidative branch [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HVS20788.1"
                     /translation="MKIAIASDHAGYEEKERLKPLLDELEIQYEDLGTMSEESVDYPD
                     YARKVGDEVASGHVDQGLLVCGSGTGMAIAANKVPGVRAAVAWTEETARLAREHNDAN
                     VLSLGVRVTPTEDLPKIVRAWFAAKFDGGRHARRVEKIREIEQEELAEHAKQ"
     gene            2042..3844
                     /locus_tag="VHD88_03025"
     CDS             2042..3844
                     /locus_tag="VHD88_03025"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: protein motif:HMM:TIGR00409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004827 - proline-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA];
                     GO_process: GO:0006433 - prolyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HVS20789.1"
                     /translation="MRWSQYFIPTLREDPADAEVVSHKLLLRAGVVRQLSAGIYSYLP
                     IGQRIALKVIQILREEMNRIGGQEFHLPALHPAELWQESGRWSAIGDDMFRLKDRKGA
                     DMCLGMTHEEVFASIARNEIRSYKQLPQVWYQIQIKFRDEPRPKSGLMRLRTFIMKDA
                     YTFDVDREGLDRSFADQREAYKRIFTRCGIQFSIVEASSGAMGGSESSEFVAKTPAGE
                     DLIASCANCGYAANLEKATSRLAVIEDEAGPDAPEEFPTPGVRTIEDLINFPGGAAAD
                     RQIKTLVYMMQKPTTGDLLPLLILLRGDHQLHDIKLSDLLGGSEARPAHPEEIREVLG
                     ASAGSLGAVGTRERSRLATYKHPDTSGESQNVIKYPEIRIIADLGLKGRRNMTTGANK
                     DDHHIREVNIERDIEVDQWADLRTVTSGEACPRCEAGTLEVYKAMEIGHIFKLGTKYS
                     ESMGATVLTQDGKEVLIIMGSYGIGVERIISAAVEQNYDNDGIIWPKTLAPFDVIVTI
                     TNVKQDEVREAGETLYRDLQQAGLEVLLDDRDERAGVKFKDADLIGIPYRITIGKKIA
                     DGVVELFDRRTKQSEDVKLSEIVARMQELAPARV"
     gene            3943..4593
                     /locus_tag="VHD88_03030"
     CDS             3943..4593
                     /locus_tag="VHD88_03030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20790.1"
                     /translation="MLGDFLPSASRTKKTNTSRPSDESLGYFRSSATRTEKHPMDNDH
                     IQALIGIVIGLIAVALLLTPVVALWVYIILQNGKRKRIRERILAARADMIGNKRWFPA
                     RYASQDRFDSWFKILPWEGAGIFIVTPGSVLFLGEMFSGAPVTLQFAPGNSRVAWLGK
                     CPWPNGAVSWLRFDTADQKHYFSSETGVLIFGSHGSTKAIYDEADKNFGSPAAQNW"
     gene            4628..>4867
                     /locus_tag="VHD88_03035"
     CDS             4628..>4867
                     /locus_tag="VHD88_03035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20791.1"
                     /translation="MIAHRVRIQNHLIVCAIILFAVAFPSTRAQDSLPDLVRRIKPSA
                     VAIETFDARGEKLSRGSGFFVDLDRVVTNRHVIEGA"
BASE COUNT         1085 a         1354 c         1362 g         1066 t
ORIGIN      
        1 gccttcctga acgttgcgcc ggacctcgtc tgattctggt tcgtgaacga tggcagcgat
       61 caggcgacca atttcgcgca tctcgggttc tttcatgccg cgcgtggtca ccgcaggagt
      121 gccgatgcgt aaacccgaag cgacgaaagg tttgttttgg tcgaaaggaa tcgtgttctt
      181 gttggcggtg atgttggcgg cttcgagagc tttctcggcg actttgccgg tgattccctt
      241 tccgtccatc cacacgtcaa ccaacatcag gtggttgtcg gtgccgccgg aaacgatacg
      301 cagtccctgc tcctgtaact cggaacaaag agctttcgcg ttcgcgagaa tctgtcgctg
      361 atattctttg aagtcatcgc gcaatgcttc cccgaacgca accgccttcg ccgcgatgat
      421 gtgaaccaga ggtccaccct gcacgccggg aaacacacgt cgatcgattt ctttcgcatg
      481 ttcttctttg caaaggatca aaccgccgcg cggcccgcgc agcgtcttgt gcgtcgtcgt
      541 agtgacgtaa tcggcaaccg gcacgggcga cggatgcaag ccggcaacga ttggtcccgc
      601 gatgtgcgcg atgtcggcaa acatgcgcgc gccgataccc ctcgagattt cgctgatgcg
      661 tttgaagtcg atgatgcgcg gatacgctga cgcgccacag acgatcaact ttggcttgtg
      721 ctcttcggcg atgcgctgta actcgtcgta atcgatcgtt tccgtttcac gcgacacgcc
      781 gtagtcagca accttgtaac tgaagcccga gaagttcagc ggatggccat gcgtcaggtg
      841 accgccgtgc gagagattca ttcccagaat cgtgtcgccg taattcagcg ccgcgaggta
      901 gacggacatg ttcgcctgcg agccgctgtg tggttgtacg tttgcgtgct cagcgccaaa
      961 caactccttc gcacgatcga ttgcggcctg ctcaaccacg tcagtccatt cgcacccacc
     1021 gtaatagcgc ttgccgggat agccttcggc atatttgtta gtgaataccg agcccgccgc
     1081 ttcgagcacg gcttcgctga caaagttctc gctggcgatg agctcgaggc cattcgcctg
     1141 gcgggcgacc tcgttgtcga tggcgttggc gatcagtgga tcaacttcgg cgagccgagc
     1201 gttgaaaggg ttgctcattc agatctccaa ttcatttagc catagagaca cagagacgca
     1261 gagaaaaacc aaattagaaa atgaagccga gaatcgagcc cctaactgct taatctctcc
     1321 gtgtctctgt gcctctgtgg ctattgcttc gcgtgttctg ctaactcttc ctgctcaatt
     1381 tcgcgaatct tttccacgcg tcgcgcatga cgaccgccat caaacttcgc cgcaaaccat
     1441 gcgcgcacga tcttgggaag gtcttcagtt ggcgtaactc gcacgcccag cgacaggaca
     1501 ttcgcgtcgt tgtgttcccg cgccagccga gctgtctctt ctgtccacgc gacggcggcg
     1561 cgcacaccgg gaactttgtt tgcggcgatc gccatgccgg tgccggaacc acagacgagc
     1621 agaccctgat cgacgtggcc actcgcgact tcgtctccga ctttgcgcgc gtaatcggga
     1681 taatcaactg actcttcgga catcgtaccg aggtcttcgt actggatttc cagctcatcg
     1741 agcagcggct tcagacgctc tttttcttca taaccggcgt gatcgctggc gattgctatc
     1801 ttcattttct aaggctcgct tttcgaattg atttgcaagg ccgatggtac atcacgcatg
     1861 ttggcgtcgc aaccggcatg cccgcgggat ttgtaggggc ggacctacgt gtccgccctg
     1921 gcgaagaggg cgcacacaca ggcgcgcccc taccgaattg cgttacgcgc tgatgctgcg
     1981 cgagaatgag gcttcgctga aattcaaacg atccgagaag attgaaatcg agccttagaa
     2041 tatgcgctgg tcacaatact tcattccaac acttcgcgaa gacccggcgg acgccgaggt
     2101 cgtttcgcac aaacttctgc tgcgcgccgg agtcgtgcgc caattgtccg caggcattta
     2161 ttcgtatctg ccaatcggtc aacgcatcgc cctgaaggtc atacagattc tgcgcgaaga
     2221 aatgaaccgc atcggcgggc aggagtttca tttgccggct ttgcatccgg ccgaactttg
     2281 gcaggaatca ggacgctgga gcgcaatcgg cgacgacatg tttcgcctga aagatcgcaa
     2341 aggcgcggac atgtgtctgg gcatgacgca tgaagaagtc ttcgcgtcca tcgcgcgcaa
     2401 cgaaatcaga tcgtacaagc aactgccgca ggtctggtat cagattcaaa tcaagtttcg
     2461 cgacgagccg cggccaaaat caggcctgat gcgtctgcgc actttcatca tgaaggacgc
     2521 ctacacgttc gacgtggatc gcgaagggct cgatcgttcg ttcgcagatc aacgcgaagc
     2581 gtacaaacgc atcttcacgc gctgcgggat tcagttttcg atcgtcgaag catcgtcggg
     2641 cgcgatgggc ggctcagaat cgagcgagtt cgtggcgaag actccggcgg gcgaagatct
     2701 aattgcgagt tgcgctaatt gcggttacgc cgcgaatctt gagaaagcaa cctcgcgatt
     2761 ggcggtaatt gaagatgaag cgggaccaga cgcgccggaa gagtttccga cgccgggcgt
     2821 gcgcactatt gaagacttga tcaactttcc cggcggagcc gcggcagatc gtcaaatcaa
     2881 gacactcgtt tacatgatgc agaagccaac aaccggcgat cttctgccgc tgctgattct
     2941 tctgagaggc gaccaccaat tgcacgatat taagctttca gatcttctcg gtggatcaga
     3001 agcgcgcccg gcgcatccgg aggagatccg cgaggtactt ggcgcaagcg ctggtagcct
     3061 cggcgccgtg ggaacaaggg aaaggtcacg actagcaact tacaaacatc ccgacacgag
     3121 cggcgagagc cagaacgtaa taaaatatcc ggagattcgc atcattgctg acttaggctt
     3181 aaaaggccga cgcaacatga cgaccggcgc caacaaagat gaccatcaca ttcgcgaagt
     3241 caatatcgaa cgtgacatcg aagtcgatca atgggctgac ctgcggacgg ttacttccgg
     3301 cgaagcgtgt ccgcgttgcg aagcggggac gctggaagtt tacaaagcca tggagatcgg
     3361 ccacattttc aaactcggaa cgaagtattc cgaatcgatg ggcgcgaccg tgctgacgca
     3421 agacggcaag gaagtgctga ttatcatggg cagctacggc atcggcgtgg aacgaatcat
     3481 ctcggctgcg gtcgaacaaa actacgataa cgacggcatc atttggccaa aaacgctggc
     3541 accgttcgat gtgatcgtga ccatcaccaa tgttaagcaa gatgaagtgc gcgaagcggg
     3601 cgagacgctt tatcgggatt tgcaacaagc cggcctcgaa gtcctgctcg acgatcgaga
     3661 cgaacgcgcc ggcgtaaaat tcaaagacgc ggatctgatt gggattccgt atcgcatcac
     3721 gattggaaag aaaattgccg acggtgtggt cgagcttttc gatcggcgaa cgaagcagag
     3781 tgaagatgtg aagttgagcg agattgttgc gcgcatgcaa gagctggcgc cagcgcgagt
     3841 ataaagagtc cgccaagcgg acggttcgat aatagcccag cacttcagtg ctgggaatgc
     3901 attgagattt gagacaagag cccgtgaaac gggcgacaga agatgctggg ggactttctg
     3961 ccgtccgctt cgcggactaa gaaaacaaac acctcgcgtc ccagcgatga atcgctgggc
     4021 tattttcgtt cgtccgctac gcggactgaa aagcatccaa tggacaacga ccacatccaa
     4081 gcccttatcg gaatcgtgat cggcttgatc gctgtggcac tcctgctaac tccggttgtc
     4141 gctctctggg tttacatcat tctgcaaaac ggcaagcgca agcggattcg cgagcgcatc
     4201 ctcgccgcgc gcgcggatat gatcgggaac aagcgctggt ttccagcaag gtatgcttcg
     4261 caagatcgat ttgattcatg gttcaagatt cttccgtggg aaggggcggg cattttcata
     4321 gtgacaccgg gcagcgttct cttcctcggc gaaatgtttt ccggcgctcc cgtgactttg
     4381 cagttcgctc ccggcaactc tcgcgtcgca tggcttggta aatgtccctg gccgaatggc
     4441 gccgtctcgt ggctccgctt cgacaccgca gaccagaagc attacttcag ctcggaaaca
     4501 ggcgtattga ttttcggctc tcacggctcg accaaagcta tttacgacga agccgacaag
     4561 aacttcggta gcccggcagc gcaaaactgg tgagcgagcg ttatactaag cacggatgaa
     4621 agtcgtcatg atcgctcatc gagtcaggat tcaaaaccat ctaatcgtct gcgcaatcat
     4681 cctcttcgca gtcgcttttc catcgacgcg ggcgcaagac tcgcttcccg atctggttcg
     4741 ccgcatcaaa ccatcagcag ttgctatcga aactttcgat gcgcgtggag aaaagctttc
     4801 gcgtggcagc ggcttctttg tcgatctcga tcgcgtcgtc actaatcgtc acgtcattga
     4861 aggcgct
//
LOCUS       DASZZE010000151         7272 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_230666, whole genome shotgun sequence.
ACCESSION   DASZZE010000151 DASZZE010000000
VERSION     DASZZE010000151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7272)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7272)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7272
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230666"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..609)
                     /locus_tag="VHD88_03040"
     CDS             complement(<1..609)
                     /locus_tag="VHD88_03040"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HVS20792.1"
                     /translation="MSTTANKLTDSLPREMQPHTYAIMRKVEDAHWWYVGRRRIISSF
                     VKRVCDELRSERHGPPRILDIGCGTGGNLEMLLEFGDAEGVDVSVEALEFCRARGLSA
                     VKQGAAESLPYEDESFDLVTGLDVVEHLDDDVAGLREMRRVLRPGGRVLLFVPAFMFL
                     WGVQDDVSNHRTRYNLPELRKKVEQAGLRVERASYANITFFAP"
     gene            complement(834..1811)
                     /locus_tag="VHD88_03045"
     CDS             complement(834..1811)
                     /locus_tag="VHD88_03045"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HVS20793.1"
                     /translation="MKILITGGAGFIGSHLIDRLLAEGGWNITVVDDFNDFYDPSIKR
                     ENLRAHLSNPTFRLVEADIRDLGALGSAFSEAKFDCIVHLAARAGVRPSLKEPRLYVE
                     TNVNGTLNLLELAREHGVRQFVFGSSSSVYGINAKVPFSEDDPIFNPISPYAATKAAG
                     ELLCHSYAHLYDMRIVCLRFFTVYGARQRPDLAIHKFAKLISAGKPIPVFGDGTTRRD
                     YTYIDDIMSGVRAAIDYDASGYEVINLGESRTVELRELISLLETALGQRAEIDRLPSQ
                     PGDVPQTFADITKGRKLLGYNPQTQIEEGIRKFVEWFRESKSAIFERGK"
     gene            complement(1921..2832)
                     /locus_tag="VHD88_03050"
     CDS             complement(1921..2832)
                     /locus_tag="VHD88_03050"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HVS20794.1"
                     /translation="MFDPSQTVDANGELKERVRAFWQAHPCGTKFSDAEMGTREFFER
                     VEAHRYAKEWHIPEAADFAGARGLRVLEIGCGLGTDGAQFAKAGADYTGVDLTDAAVD
                     LARKHFELLGLRGNFRTADAENLDFTDESFDLVYSHGVLHHTPDTARAVREIHRVLRP
                     GGRAIVMLYHRDSYNYCVGIRVLRRSGTRLLKSERGIKLINRLTGEPVDSLREHARLL
                     RASSNGYLSSPEFLSQSTDGAGNPLARVYSRREARDLFKDFREVGMRAYFLNKRFIPV
                     LGKLLPRSIESALALRWGWHLWIYAKK"
     gene            3046..3333
                     /locus_tag="VHD88_03055"
     CDS             3046..3333
                     /locus_tag="VHD88_03055"
                     /inference="COORDINATES: protein motif:HMM:NF014636.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquitin-like small modifier protein 1"
                     /protein_id="HVS20795.1"
                     /translation="MITFQIAGYLTEFTGGRAEIVVDGASATVGDALEMLWGVHAGLR
                     DRVLTEQGHVRPHVNVFVNSEVVRRDQILHNEINGDTEICIMPAVSGGAAS"
     gene            3385..4233
                     /locus_tag="VHD88_03060"
     CDS             3385..4233
                     /locus_tag="VHD88_03060"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HVS20796.1"
                     /translation="MSVVLEEGCRVSAMREGTPLVSGTLRIWNQIGRATGAQAISLRI
                     MEFASGLSPGIRNEDCDEILYAVDWEQGHHARGRWERGHPVRTEGSVSTACVSGWVSV
                     FINGHPYDIYPDTGIYIRPGETFAIDNTGPSSVILISSQCPDPDRNPNFVEPLTVPPS
                     DATQSEQRPLVRLADRPSLPTADRWYRVLIDEEVGSTQVTQFLGSIPPGRAPDHFHNY
                     EEVLFILKGEGRMWTGETNTPIAPGSCIYLPKGRVHCVENTGKDELRLLGVFYPAGSP
                     SVRYDV"
     gene            complement(4251..5408)
                     /locus_tag="VHD88_03065"
     CDS             complement(4251..5408)
                     /locus_tag="VHD88_03065"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HVS20797.1"
                     /translation="MKPEPQINRRREEFPTLASGIHLLSHSLGPVPRAARESMNSYVD
                     AWEHHTSEDAWATSWWEMSARVGDRIAAILGGAPGSVQMQPNASIALSTVASCFDFKT
                     SKRNKVVTSALDFPSMEYIWDAQRRVGARIEVVSSDDGITVPLERILDAIDGETCLVA
                     LSHVSFRSSYRVDALAIVERAHQHGALALLDVYQSAGALELRASDWNVDFLIGGTIKW
                     LCGGPACGYLYVRPDLQKDLQPRLTGWVAHEAPFAFAPAPMRYDKSMRRFAQGTPSIP
                     ALYSVLPGLQIIEEVGVKTIQAESQRRTEWMINFALDRGWKVNSPRNVSDRGGSVMIA
                     VDDGPTMVNRLGERKVFVDCRPGVGLRISPHFFNTDEEVREALGILADLIG"
     gene            complement(5607..6344)
                     /locus_tag="VHD88_03070"
     CDS             complement(5607..6344)
                     /locus_tag="VHD88_03070"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HVS20798.1"
                     /translation="MEISDRRVLITGASRGLGRTLAFAFAEAGAREVFAGARKPEDIE
                     KLRSDAAAISAPITPITLDVTNEDDVNAAAKLGFIDILVNNAGVAGYGDPLQMNFEDA
                     LREMNVNYFGALRMARAFAPAMIGRGEGMIVNVATAFAKVNLPLVGTYCASKAALLSL
                     GQALRAYLSDKGVHVMTVMPTTIDTDMSRGADVPKMTTEFVASEILRHIREETIDPPI
                     GEEAARVLESLRTDPDGIEKMLSQIRA"
     gene            complement(6418..>7272)
                     /locus_tag="VHD88_03075"
     CDS             complement(6418..>7272)
                     /locus_tag="VHD88_03075"
                     /inference="COORDINATES: protein motif:HMM:NF012544.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HVS20799.1"
                     /translation="FAIHRANYSPFITHGPRGFALSLAPIFFSYAGFESLAQTAGETK
                     DSTRRLPMVFLKGISATALIFIFMSAVAFGVLPGARLGASSAPMTEVAAVYLPWGAAA
                     FVTLGAIMAITTSLNPTLIVPSRLALIFVEDRLAPRWLGAVNPRTATPIRALTLTLAA
                     CLLLVISRQLSLALNIAVFALVLLYFLHSLTFLVLPRRNPKLYREITIGIPVGLQRGA
                     AVVSVLSMGVLIAVQVAQDLHTLTTQSLSERIAKHSLTSLELALVWSLIGALLYGFAR
                     AMRKSDKL"
BASE COUNT         1633 a         2127 c         1998 g         1514 t
ORIGIN      
        1 cggcgcaaaa aaagttatgt tagcgtaact cgcgcgctcg acgcgcaggc cggcttgctc
       61 aactttcttt ctcaactcgg gcaggttgta acgcgtgcga tgattgctca cgtcatcctg
      121 cacgccccag agaaacatga acgcgggaac aaacaacaac acgcgtccgc ccggtcgcag
      181 cacgcggcgc atctctcgca aacccgcaac atcatcatcg agatgctcga ccacatcaag
      241 cccggtgaca agatcaaacg attcgtcttc gtatggcaaa ctctcggccg cgccttgctt
      301 gaccgcactg agtccacgcg cgcgacagaa ctctagtgct tcgacggaaa catcgacgcc
      361 ctcagcgtcg ccaaactcca agagcatctc aagattgccg cctgtgccgc atccgatatc
      421 gagaatgcgc ggcggcccat gccgttcact tcgaagctca tcgcatactc gcttgacgaa
      481 agacgagatg atccgacgac gcccgacata ccaccagtgc gcgtcttcaa ccttgcgcat
      541 gatcgcgtag gtgtgcggct gcatttcgcg cggcagagaa tcggtcagtt tgttagcggt
      601 agttgacact aattcttcgc ggctctgccg cttgatgtgc ggtgtgcggt aaggcttcgc
      661 gttaccggca agccttcatt tactctcttc gcgagtctat gcctcgcgtc ggaggcatag
      721 ccttcccagg gttgattgaa tctgacggaa aggcagagcc tttccgcaca tcggccggca
      781 aagccgcttt gcgatagtca ttgtagaaca attgaacaaa gccgtgcagg atactacttc
      841 ccgcgctcaa aaattgcgga cttgctttcg cgaaaccact cgacaaactt ccgaatgccc
      901 tcttcaatct gagtctgcgg attgtagccg agcagcttgc gccctttcgt gatatcggcg
      961 aaggtttgcg gcacatcgcc gggctgagac ggcaggcgat cgatctcggc gcgctggccc
     1021 agcgcggttt caagaagcga aatcaactcg cgcaactcaa ccgtgcgtga ctcccccaga
     1081 ttgatgactt catagccact cgcgtcgtaa tcgatcgccg cgcgcacgcc actcatgatg
     1141 tcgtcgatgt aagtgtaatc gcgacgtgtc gtgccgtcac caaaaaccgg aatcggtttg
     1201 ccggcactga tcagtttcgc gaatttgtga atcgccagat cgggccgctg gcgcgcgccg
     1261 taaaccgtga aaaagcgcag gcacacgatg cgcatatcgt aaagatgcgc gtacgaatga
     1321 caaagcaact cgcccgcagc ttttgtcgcc gcgtagggcg agatcggatt gaagattgga
     1381 tcgtcctcgc tgaacggaac tttggcattg atgccgtaaa ctgaagacga cgagccgaag
     1441 acgaactgcc tcacgccgtg ttcacgggcc agttcgagca gattgagcgt gccgttaacg
     1501 ttcgtctcga cgtaaagccg cggctctttc agcgacggcc ggacgcccgc gcgagctgcc
     1561 aagtgcacaa tgcagtcaaa ctttgcttca ctgaatgcgc ttccgagtgc gccaagatcg
     1621 cgaatgtccg cttcgacaag tctgaaagtc ggattcgaga gatgcgcgcg caagttctca
     1681 cgcttgatgg acggatcgta aaagtcgttg aagtcgtcaa caactgtgat attccagccg
     1741 ccttccgcca gcaagcgatc gatcagatgc gaaccgatga aacccgcgcc gccagtgatt
     1801 aggattttca tctcaaggga tcattaacca cgaagacaca aaggtcacaa agtagttaga
     1861 ctaaaaaaac aacctcgttc ccatctggtg ctttgtgctt cgtctctttg tggtgagaat
     1921 tcatttcttc gcataaatcc acagatgcca cccccagcgt aaggccagcg ccgattcaat
     1981 tgaacgcggc agcaatttgc caagcaccgg gatgaacctc ttgttgagaa agtatgcgcg
     2041 cattccgacc tcacgaaaat ctttgaacag gtcgcgagct tcgcgccgcg aatagacacg
     2101 cgccaaagga ttgccggcgc cgtcggtact ctgactcaga aactccggcg acgaaagata
     2161 gccgttgcta cttgctctca agaggcgcgc atgctcgcgc agcgaatcga ccggctctcc
     2221 ggttagacga ttgatcaact tgatgccccg ctcactcttc agcaagcgcg tccccgaacg
     2281 ccgcaatacg cgaatgccga cgcaatagtt gtagctgtcg cgatgataca gcatcacgat
     2341 tgcacgccca ccgggtcgca gcacgcgatg aatctcgcgc acggcgcgcg cggtgtcggg
     2401 cgtgtgatgc aaaacgccgt gcgagtaaac cagatcgaac gactcgtccg tgaaatccag
     2461 gttctctgca tccgccgtgc gaaagttgcc gcgcaagccc agcagttcga aatgctttct
     2521 ggccagatcg accgccgcat cggtcaaatc aactccggta taatcggcgc ctgctttggc
     2581 gaattgggct ccatcagttc ccaggccgca accgatttcc agaacgcgca acccgcgcgc
     2641 gccggcaaag tcagcggcct cgggaatgtg ccattctttc gcgtagcgat gtgcttcgac
     2701 gcgctcgaag aattcgcgcg tgcccatctc ggcgtcactg aacttcgtgc cgcagggatg
     2761 cgcctgccaa aaggcgcgca cgcgctcttt tagttcgccg ttcgcgtcaa ctgtttgact
     2821 tggatcgaac atctttcttg cgtcggttca ttatacatcg ctgtatcgcg gaaagcgttt
     2881 ttaaccgcag agggagcaga ggatcgcgca gagttcgcag aggaagaatt ccgcgacctc
     2941 tgcgaagtcc tcagcgtcct ctgcggtgag ctctttgaag taggtcaatc attcagtcgt
     3001 agacttctga cttgtcgctc ggctacgata acggagttca ggctcatgat tacttttcag
     3061 attgcgggtt atctgactga attcaccggc ggccgcgccg agatagtggt tgacggcgca
     3121 tcagcgacgg tcggtgacgc gctggaaatg ctctggggcg tgcatgccgg gctgcgcgat
     3181 cgcgtgctga ccgagcaagg gcacgtgcgg ccgcacgtca acgtgttcgt caacagtgaa
     3241 gtcgtgcgcc gcgatcagat tttgcataat gagattaacg gtgacacgga gatttgcatc
     3301 atgccagcag tgagcggagg cgccgcttca taacatcacg catcagcacc cgatgcatca
     3361 tctaaaacgg gacggtgaga atccatgtca gtagttttag aggaaggctg ccgcgtttcc
     3421 gcaatgcgcg aaggcacccc gttggttagc ggaactctgc gcatctggaa tcaaattggc
     3481 cgcgcgaccg gagcgcaagc aatctcgctg cggataatgg aattcgcgtc gggtttgtcg
     3541 ccgggaattc gtaacgaaga ttgcgacgaa atcctttacg ctgtcgattg ggagcaagga
     3601 catcacgctc gcggacgctg ggagcgcgga catcctgtcc gcacggaggg ttctgtcagt
     3661 accgcctgcg tgagcgggtg ggtaagtgtt ttcattaatg gtcatcccta cgacatctat
     3721 cccgacacgg gcatctacat ccgccccggt gaaaccttcg ccatcgacaa taccggaccg
     3781 agttcagtca tcctcattag ttcgcaatgt cccgatcccg atcgcaaccc gaactttgtt
     3841 gagccgttaa ccgttccgcc ttccgacgcc acgcaatccg agcaacggcc gctggtgcgt
     3901 ctcgcagatc gtccttcatt acccaccgcc gatcgctggt atcgcgtgct gatcgacgaa
     3961 gaagttggca gcacgcaagt gacgcagttc ttaggctcga ttccacccgg acgggcgccc
     4021 gatcactttc acaactacga agaagtgctg ttcattctga aaggtgaagg ccgcatgtgg
     4081 accggcgaaa ccaacacgcc gatcgcgccc ggctcctgca tctatctgcc gaagggccgg
     4141 gtgcactgtg tcgagaatac gggcaaagat gagttgcgtt tgctgggagt gttctatccc
     4201 gcgggcagtc cgagtgtgcg gtatgatgtt tgaagagtgc gccgtgactc tcaaccaatc
     4261 aagtccgcca gaatccccaa cgcctcgcgc acctcttcat cggtattaaa gaaatgcggc
     4321 gagatgcgca ggcccacgcc ggggcgacaa tcaacgaaaa cttttctttc accgagacga
     4381 ttgaccatcg tcgggccatc gtcaactgca atcattactg agccgccgcg atcgcttacg
     4441 ttgcgcgggc tgttcacctt ccaacctcga tccaaagcaa agttgatcat ccattcggtg
     4501 cggcgttgtg attccgcctg gatcgtcttc acgccgacct cttcgatgat ttgcagtccc
     4561 ggcaagaccg aataaagcgc gggaatgctc ggggtgcctt gcgcgaagcg acgcattgat
     4621 ttgtcgtagc gcatcggcgc gggcgcaaac gcaaacggag cttcgtgcgc gacccaaccc
     4681 gtcaatcgcg gttgcaaatc tttttggaga tcgggcctca cgtagaggta accgcaagcc
     4741 gggccgccgc acagccactt gatcgtgccg ccgatcagga aatcaacatt ccaatcgctc
     4801 gcgcgcaatt ccaacgcgcc cgccgattga tatacatcga gcagtgccag cgctccgtgc
     4861 tggtgtgcgc gctcgacaat cgccagggca tcgacgcgat aggaactgcg aaacgaaaca
     4921 tgtgagagcg cgaccaggca agtctctcca tcaatcgcgt ccagaatgcg ttcgagcgga
     4981 actgtgatgc cgtcgtcgga ggagacaact tcaatccgcg caccgacgcg ccgttgggca
     5041 tcccagatgt attccatcga tgggaaatca agcgcgctgg taacgacttt gtttcgtttg
     5101 ctcgttttga aatcaaaaca cgaagcgacg gttgagagcg caatcgaagc attcggttgc
     5161 atctgcactg agccgggcgc gccgccgaga atcgcggcga tgcgatcgcc gacgcgcgcg
     5221 gacatctccc accaactcgt ggcccaggcg tcttcgctgg tgtgatgttc ccacgcgtcc
     5281 acgtacgaat tcatcgactc gcgcgcggcg cgcggcaccg ggccgaggct gtggctcagc
     5341 agatgaatgc cggaagcgag cgtcgggaat tcttcgcggc gacggttgat ttgaggttca
     5401 ggtttcaagg ttcaagtttc aggttgagaa aaaagatttc gtttcaaagc tccgttagga
     5461 gcgcgatatt tatagataag agttgtaatt ttgatccaag ctcctttagg agcgccatat
     5521 aaaaccggat aacataccgc tcctacggag ctaacggcct tcgtaatggc tcgagttcta
     5581 taaatatttc gctcctaacg gagctcttaa gctcggatct gtgaaagcat cttctcgatg
     5641 ccatcgggat ccgttctcaa actttccaaa actcgcgcag cttcttcgcc aatcggcgga
     5701 tcgattgtct cttcgcggat gtgacggaga atctcagaag cgacaaactc tgtcgtcatc
     5761 ttcggcacgt cagcgccgcg gctcatgtct gtatcgatcg tggtcggcat tacagtcatc
     5821 acatgcacgc ctttgtcgga taggtatgcg cgcagcgcct gacccaatga caacaacgcc
     5881 gcctttgagg cgcagtacgt tcccacgagc ggcagattta ctttcgcgaa ggccgtggcc
     5941 acgttcacga tcattccttc gccgcgcccg atcatcgccg gcgcgaaggc gcgcgccatg
     6001 cgcagcgcac cgaaatagtt gacgttcatt tcgcgcagcg cgtcttcgaa attcatctgc
     6061 aaaggatcgc cataacccgc aactcccgca ttgttgacaa gaatatctat gaagccaagc
     6121 ttagccgccg cgttcacgtc atcttcgttc gttacgtcga gtgtgatcgg cgtgatcggc
     6181 gcgctgatcg ccgccgcatc gctccgtaac ttttcgatgt cttcaggttt gcgcgcgccg
     6241 gcaaagactt cgcgcgcgcc tgcttcggca aatgcaaagg ccagagtccg gccgaggccg
     6301 cgacttgcgc cagtgattaa gactcgtctg tctgaaattt ccataacaaa tgtccgacaa
     6361 acttcagttt gtcgattagt tccgtcggcg aagattacat cgaagatgaa cgacaaacta
     6421 aagtttgtcg gacttccgca tcgctcgcgc aaaaccataa agtagcgcgc cgatcaggga
     6481 ccacacaagc gcgagttcga ggctcgtcag cgaatgtttt gcgattctct cgctcagact
     6541 ctgcgtggtg agagtgtgca ggtcctgcgc gacctgcacc gcaatcaata cgcccatgga
     6601 cagaactgaa actaccgccg caccgcgctg caacccgacg gggatgccga tggtgatctc
     6661 tcggtagagc tttgggttcc gccgcggcaa caccagaaac gtcaaactgt gcagaaagta
     6721 gagcagcacc aatgcaaaca cggcgatgtt caaagccagc gaaagctgac ggcttatcac
     6781 gagcagtaaa cacgcagcca gcgttagagt cagagcgcga atcggcgtcg cggtgcgcgg
     6841 gttgacggcc ccaagccagc gtggcgccag acgatcctcg acaaaaatga gcgcgagtct
     6901 tgatggaacg atgagcgtcg gattcaagga agtcgtgatc gccatgatgg cgccgagtgt
     6961 cacaaaagcc gccgcgcccc acggcaaata gacggcggcc acttcagtca tcggcgcgct
     7021 gctcgccccg agtcgcgcgc ccggcagcac accgaacgcc accgccgaca taaaaatgaa
     7081 gatcagcgcc gtcgcgctga ttcctttcaa aaaaaccatt ggcagacgcc gcgtgctgtc
     7141 ttttgtttct cccgccgttt gggccaaaga ctcaaagccg gcgtaagaaa agaaaatcgg
     7201 cgccaggctc agggcgaatc ccctcgggcc gtgcgtgatg aacggcgagt agtttgccct
     7261 gtggatcgca aa
//
LOCUS       DASZZE010000152         1685 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_149460, whole genome shotgun sequence.
ACCESSION   DASZZE010000152 DASZZE010000000
VERSION     DASZZE010000152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1685)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1685)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1685
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_149460"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1466
                     /locus_tag="VHD88_03080"
     CDS             <1..1466
                     /locus_tag="VHD88_03080"
                     /inference="COORDINATES: protein motif:HMM:NF013727.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HVS20800.1"
                     /translation="DYQLPSVELLNEAEMRREQADDELLNMATKLAEKCREFNVTGQI
                     KYICPGPVVTTYEFKPDPGVKYSRVTGLVDDLCLALKAESIRIDRMPGKPHVGIEVPN
                     PRRETIYLREVIESRAFKESPSKLTIAMGKTIDGLNYTTDLARMPHLLIAGTTGSGKS
                     VGVNSLLVSILYRARPDEVKLILIDPKRLELGLYEDIPHLATPIITDPKPAARALRWA
                     VGEMERRYKELAGWGVRNIDGYNAERERRNTVKDFDDNGEPWIRMPYIVIIIDELADL
                     MMTSGHEVEDSITRLAQMARAVGIHLVLATQRPSVDVITGLIKANFPSRISYRVSSKV
                     DSRTILDTNGAEHLLGRGDMLFLPPGSSRLLRVHGAYIDESEINKIVTHIKAQWQPDY
                     DETITQTDEEAMGLEDSGGERDELFEDALRICVDMKRASTSVLQRRLRIGYGRAAAVL
                     DQMERDGLIGKADGARPRPVLGRAYEIVAEWDEQESV"
BASE COUNT          378 a          505 c          468 g          334 t
ORIGIN      
        1 ccgattatca actgccttcg gtcgaacttt tgaacgaagc ggagatgcgc cgggagcagg
       61 ctgacgacga actgcttaac atggctacaa agctggccga aaaatgccgc gagttcaacg
      121 tcaccggcca aatcaaatac atctgtcccg gccccgtcgt gacgacttac gaattcaagc
      181 cagaccccgg cgtgaagtat tcgcgcgtca ctgggctggt tgacgatctt tgtctcgctt
      241 tgaaagccga atcgatccgc atcgatcgca tgccgggcaa gccgcacgtc ggcatcgaag
      301 tgcccaaccc gcgccgcgaa acgatctatc tgcgcgaagt gattgaatcg cgcgcgttca
      361 aggaatcgcc gtccaagctc accatcgcga tgggcaagac aatcgacggg ctgaactata
      421 cgaccgatct cgcgcgcatg ccgcacttgc tgatcgccgg cacaaccggc tcgggcaaat
      481 cggttggggt taactcgctt ctggtgtcga ttctctatcg cgcacggccc gacgaagtaa
      541 aactgattct gatcgatccg aagcggctgg agcttggcct ctacgaagac attccgcacc
      601 tcgcgacgcc gatcatcact gatccaaaac ctgctgcgcg cgcgctgcgc tgggctgtcg
      661 gcgagatgga gcgacgttac aaggaactcg ccggctgggg cgtgcgcaac atcgacggct
      721 acaacgctga gcgcgaacgc cgcaacacgg taaaggattt tgacgataac ggcgagccgt
      781 ggatcaggat gccgtacatc gttatcatca tcgatgaact cgccgatctg atgatgacgt
      841 cgggtcacga agtggaagac tcgatcacac gtctggcgca aatggcccgc gccgtcggca
      901 ttcatctcgt actggcgact cagcgtccgt cggtcgatgt aatcaccgga ttgatcaagg
      961 caaacttccc ttcccgcatt tcctatcgcg tttcttcgaa agtcgattcg cgcaccatcc
     1021 tcgacacgaa cggcgcggag catctgctcg gtcgcggcga catgctgttt ctgccaccgg
     1081 gttcgtcgcg tctgctgcgc gtacacggcg cttacatcga cgaatcggaa attaacaaga
     1141 tcgtcactca catcaaggcc caatggcagc cagattacga cgaaaccatc acgcaaaccg
     1201 acgaagaagc gatgggcctg gaagactcgg gcggcgagcg cgacgaactg ttcgaagacg
     1261 ctttgcgcat ctgcgttgac atgaagcgcg cctccacgtc agtcttgcaa cgtcggctcc
     1321 gtatcggtta tggccgcgcc gccgcggtcc tcgatcaaat ggaacgcgac ggtttgatcg
     1381 gcaaagccga cggggcccgc ccacgtcctg tcctcggccg cgcgtatgag attgtggcgg
     1441 agtgggatga gcaggaaagt gtgtaagact cgcgcggtgc aacacttctc aacagaatct
     1501 gacacgccgc agccgttcca cactttctgt ggaaaagttt gtggagatcg ccttcccccg
     1561 tggcacaact aagttacagt gcaacacttc cagcaaattg cactcgcgag cggcgtcgcg
     1621 tttttcagtc agaaacttgc attcgtaaac cgagcgccat tagtcgataa attcctggca
     1681 tctcc
//
LOCUS       DASZZE010000153         4944 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_38357, whole genome shotgun sequence.
ACCESSION   DASZZE010000153 DASZZE010000000
VERSION     DASZZE010000153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4944)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4944)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4944
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38357"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..533)
                     /locus_tag="VHD88_03085"
     CDS             complement(<1..533)
                     /locus_tag="VHD88_03085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20801.1"
                     /translation="MGTLNIDRYHAAMGDASYKDVTRVHGKPLSDAIATFYCTQRKLP
                     FAPVLGHERLIRLLVDSQIDRPRLRFLEQDRGGLQRFAKAIEDIQFAGSIRTVRPGTI
                     MFPQQPIADITGKFGLTQAQEIKFEHAFDLPMTTASVAMQFRMAAGSRWLSDFSLRRN
                     GDIERAVDIATYAFIGG"
     gene            745..978
                     /locus_tag="VHD88_03090"
     CDS             745..978
                     /locus_tag="VHD88_03090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20802.1"
                     /translation="MKRTSLFLRLGTALLFCLSAFVTVSPASGAAGNRCKDRCNDSYH
                     RRKDECRGLRRYEKRRCEDRAKYERDECKRRCR"
     gene            complement(1384..1650)
                     /locus_tag="VHD88_03095"
     CDS             complement(1384..1650)
                     /locus_tag="VHD88_03095"
                     /inference="COORDINATES: protein motif:HMM:NF017451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four helix bundle protein"
                     /protein_id="HVS20803.1"
                     /translation="MESIISKKSFEFALTIINLYRQLQERREYVISRQLLRAGTSIGA
                     NVEEATAGQSRKDFASKMAIASRKPEKRNTGFDCSMNPNSSMLM"
     gene            complement(1698..2276)
                     /gene="pncA"
                     /locus_tag="VHD88_03100"
     CDS             complement(1698..2276)
                     /gene="pncA"
                     /locus_tag="VHD88_03100"
                     /EC_number="3.5.1.-"
                     /EC_number="3.5.1.19"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional nicotinamidase/pyrazinamidase"
                     /protein_id="HVS20804.1"
                     /translation="MSNPTKKALIVVDVQNDFCPGGTLAVANGDEVVAPLNKLITEFL
                     DRSEAVFKTRDWHPEKTKHFATYGGTWPVHCVQGTRGAEFHPDLIDDPRVTIISKGAD
                     ESADGYSGFDGTNLAQLLRDRSVDEVWIGGLATDYCVKQTVLDALREGFKVKALADAM
                     RPVNVNPNDGAQAIEEMKAAGAEIVGSETPSS"
     gene            2468..3760
                     /locus_tag="VHD88_03105"
     CDS             2468..3760
                     /locus_tag="VHD88_03105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HVS20805.1"
                     /translation="MSDPTLMAMTCPHCGIPAAPGEGFCRSCGKQLFAPTITAPPPAV
                     PPLQQASFAPPAKKRRSKLMMGCLVFIGLVVVAAGAGGIYIWRRTSYTPPVRKAPAIP
                     ERAAGTMTEFPVDNDKEAPAKPTSVQTETLSGAAAKAGGSSPTKLPPGIDRPSLAKGA
                     TTMTSATYRPRPKNPGTQSNASVGKDIYICVLTAMPNEPGFVDGLAASVARATSGART
                     GVRVQSPKGGIYTGSRIRSPQANVYVLSKQGADVVILIYGTDPSTQDVVDRLAQNVGN
                     GEGLNDYPEVKDSLWTLPASTPSDLTLLEINTLTGEQIESSIGSGGDLPSQMRPFIPE
                     RLTSARYTDTGRQEWVALNLEYGSTFQAWRTWLLARSALGLGGAQTTTVRDVDALYLN
                     QEGKRILIFQKGPYLIFLSGPGAATVDRLVALGNQIQV"
     gene            3925..>4944
                     /locus_tag="VHD88_03110"
     CDS             3925..>4944
                     /locus_tag="VHD88_03110"
                     /inference="COORDINATES: protein motif:HMM:NF027232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20806.1"
                     /translation="MLRRIRIALLLASAVLWFGGSFALVNAQQPNTDALRYRYIGPVG
                     NRTTSVVGVPGQPYVYYAGSASGGIFKTTDGGIHWEAIFDGQPVSSIGSLAIAPSDAN
                     VIWAGTGEAWIRSHISVGAGIYKSTDAGKTWKLMGLEKTGRIGHIAIDPKNPDIVLAC
                     ALGHAYGPQPERGVFRTTDGGKTWDRVLFVDENCGCSDIAMDPNNPRILFAGMWPLEI
                     HTWGRESGGPGSGLYMSRDEGATWKKLTGHGLPTRTTGKFALAIARTNSNRVYALIET
                     GDGVPYKGQETDRGKLWRSEDGGENWRLVSYDRSLGGRTHYYFRVAVSPDNENETYFL
                     TAGYAV"
BASE COUNT         1063 a         1366 c         1396 g         1119 t
ORIGIN      
        1 aagccgccga tgaaagcgta ggtcgcaata tccaccgcgc gttcgatgtc gccgttgcgg
       61 cgcagcgaaa aatcagaaag ccagcgactg cccgcggcca tgcgaaactg catcgccacg
      121 ctcgcagttg tcattggcaa atcgaaagcg tgctcgaact tgatttcctg cgcttgggtg
      181 aggccgaact tgccggtgat gtcggcaatc ggttgctgtg gaaacatgat cgtgccgggt
      241 cggacggtgc ggatgctgcc ggcaaactgg atgtcttcga tggctttcgc gaagcgttgc
      301 agcccgccgc gatcctgttc cagaaaacgc aggcgcggcc gatcgatttg actgtcaacc
      361 agcagacgta ttagtcgctc gtggcccagc accggcgcga atggcagttt gcgctgcgtg
      421 cagtagaaag tcgcgatggc gtcgctgagc ggtttgccat ggacgcgcgt tacatctttg
      481 taagacgcgt cgcccatcgc ggcatgatag cgatcgatat tcagggtccc catcgcgcgg
      541 aaatgatatc acggcaaagt tctgcgccgc agcactctgc tcgagcattt caacgctttg
      601 attgcgcgca agtcggtagt atcctaagtg catcctctct ggaaacttgt cggccgtgcc
      661 tcgaatgccg gcatcaacct gaccgtccgc acccgcggag ttttcgtgcg gcgcacagca
      721 gttactctaa aaaggagcaa agtaatgaaa cgaacaagtc ttttcctgag gctgggaacg
      781 gcgttgttgt tttgccttag cgcatttgtc accgtgagcc ctgcgtcagg cgcggctggc
      841 aaccgctgca aggatcgatg taacgactct tatcatcggc gcaaggatga gtgcagaggt
      901 ctgcgaagat acgaaaagcg tcgctgcgaa gatcgggcga agtatgaacg cgacgaatgc
      961 aaacgtcgct gccgttaata gctgaacatc gctctcccct gcattatgct gaaaagaggt
     1021 gaatcatgat gaagttgacc actggtcttg tttcacgcgc ggctgtgctg acgctgctct
     1081 gttttggatt gtggctcggc ccaggttccg tttccgccgc cggacgtggc aacaggtgca
     1141 aggaccgatg caatgacgtt tatcgagtcc gaagagacgc ctgcaaggcc atcccgttaa
     1201 agtacgaacg acatcgctgt gaacaaagag ccaagcgagc taagaacgat tgtaaagatc
     1261 gctgcagata gctcaatttt gagttttaag gtttgagttt tgagttagcc aaactctggc
     1321 tggttgtctt gacgatcgac gtcaagatcc taatcaactc ttcaacctgg ccgagttctc
     1381 tggttacatc aacatcgacg agtttggatt catcgagcag tcgaagccag tatttcgttt
     1441 ctctggcttc ctagacgcaa ttgccatttt agaagcaaaa tctttacggc tttgtccggc
     1501 ggttgcttcc tcgacattag ctcctatgct cgttccggct cgcagcaact gtcgcgaaat
     1561 tacatattct cgtcgttcct gaagttgtct gtacagattg ataatcgtca gcgcgaactc
     1621 gaaactcttc ttgctgatta tgctttccac gatatgcagc gtcactcgaa ggcgaactca
     1681 aaactcaaac ttcaaaatta agaactcggt gtttcgctgc cgacgatttc agctcccgcc
     1741 gctttcatct cttcgatagc ttgcgcgcca tcgttcgggt tcacgttaac gggtcgcatg
     1801 gcgtcggcca aagctttcac tttaaagcct tcgcgcagcg cgtcgagcac ggtctgcttc
     1861 acgcaatagt cggtcgccag tccgccaatc caaacttcat caacgctccg gtcgcgcagg
     1921 agttgcgcca ggttcgtgcc atcgaacccc gagtagccat cagcgctttc atctgctcct
     1981 tttgagataa ttgtgacgcg cggatcatcg atcagatcgg gatgaaactc cgcgccgcgc
     2041 gtgccctgca cgcagtgaac cggccaggtt ccgccgtatg tcgcgaagtg tttcgttttt
     2101 tcaggatgcc aatctcgggt tttgaaaacc gcttcgctgc gatcgagaaa ctccgttatt
     2161 agtttgttca gcggcgcaac gacttcatcg ccgttcgcga cggccagagt cccgcccgga
     2221 cagaaatcgt tctgcacgtc aacgacaatc aatgctttct tcgtcggatt cgacatttgt
     2281 cccagactcc ctgctcctct tatgaggtta gattagctcc gcgttgaaag cgctgcaatg
     2341 cgttaggcag aaatactatt gactttcggc gcttttctag atagaagcat ctccgccaac
     2401 acgcatttcg agtctgaagc gcggtcgcag tgccgcgcgg cagagacaat ccgagaactc
     2461 taaactaatg agtgatccga cattgatggc gatgacttgt ccgcactgcg gaattccggc
     2521 agctcccgga gaaggattct gtcgtagctg cggcaagcaa ttgttcgccc ctacgatcac
     2581 tgcgccgccg ccggctgttc ctccgctaca acaggcgtcc ttcgcgccgc cggctaaaaa
     2641 gcgtcgcagt aagttgatga tgggttgcct tgtcttcatt ggtctcgtcg tagtcgcggc
     2701 gggcgcgggc ggaatctaca tttggcgccg cacgtcgtat acgccgccgg ttcgcaaggc
     2761 tccggcaatt cccgagcggg ccgcgggcac gatgactgag tttcccgttg acaacgacaa
     2821 agaggcgccg gcgaaaccaa cttccgttca gacggaaacg ttgagcggcg cggcggcgaa
     2881 ggctggaggg tcatcgccga ccaaactgcc tcccggaatc gatcgtccaa gtcttgcgaa
     2941 gggcgcgaca acgatgacct ccgcgactta tcgtcctcgt cctaagaatc ccggcacgca
     3001 atcaaacgcg tcggttggta aggatattta catctgcgtt ctgaccgcga tgcccaatga
     3061 gcccgggttt gttgacgggc tcgctgcatc ggttgcgcgc gcgaccagcg gcgcgcgcac
     3121 cggcgtgcgc gtgcagagtc ccaagggcgg catctatacc ggctcgcgca ttcggtcgcc
     3181 gcaggcgaac gtgtacgtct tgagcaagca gggcgcagac gtcgtcatcc tcatctacgg
     3241 aacagatccg tcaacgcagg atgttgtcga tcgtctcgcg caaaacgttg gcaacggtga
     3301 aggtctgaac gattatccgg aagtcaaaga ttctctctgg actttgccgg catcgacgcc
     3361 gagtgacctg acgttgctgg aaatcaacac tctcactggc gaacaaatcg aaagttcgat
     3421 cggttccgga ggagatcttc catcacagat gcgtcctttc attccggagc gattgaccag
     3481 tgcgcgctac accgacacag gtcggcagga atgggtcgcg ctgaatttgg aatacggatc
     3541 gacttttcag gcatggcgaa cgtggttgtt ggcgcgcagc gctttgggac ttggcggcgc
     3601 gcagacaacc acggtgcgcg atgtggatgc gctctatctc aaccaggaag ggaagcgcat
     3661 tctgatcttt caaaaaggcc cttacttaat ttttctgagc ggccctggcg cagccactgt
     3721 tgatcgcctg gtggcgctgg gaaatcaaat tcaggtttag gtagatcaag ccacagagac
     3781 acagagacac agagaaaaca caaatcagaa agctcggaat gcctgttatc ctaaccactc
     3841 tttctcttac ttatttctct gcgtctctgt gcctctgtgg cagatcttaa gttccaacga
     3901 cttagtcttc gcaggaggtc cacaatgttg agaagaattc gaatcgcatt actactggcg
     3961 tccgcagttc tttggtttgg cggttctttc gcgctggtca acgcgcagca accgaacacc
     4021 gacgcgctgc gttatcgcta catcggtccg gtcggcaacc gcaccacgtc agtcgtcggc
     4081 gtgccgggac agccttacgt ttactatgcc ggttcagcgt cgggcggcat cttcaaaaca
     4141 accgatggtg ggattcactg ggaagcgatc ttcgacggcc agcccgtgtc atcgatcggg
     4201 tcgctggcga tcgcgccgtc tgatgcgaac gtcatctggg cgggcactgg cgaagcgtgg
     4261 attcgcagtc atatttcagt cggcgcggga atctacaaat caaccgatgc gggcaagacg
     4321 tggaagttga tgggactgga gaagacgggc cgcatcggcc acatcgcaat cgatccgaag
     4381 aatcccgaca tcgttttggc gtgcgcgctc ggtcacgctt acgggccaca gccggagcga
     4441 ggtgtttttc gcacgactga tggcggcaag acttgggacc gcgtgctttt cgttgacgaa
     4501 aactgcggct gttcagacat cgcaatggat ccaaacaatc cgcgaattct ttttgcgggc
     4561 atgtggccgc tcgagattca cacctgggga agggaaagcg gtggtccggg cagcgggctc
     4621 tacatgtcgc gcgatgaagg cgcgacgtgg aagaaactaa cgggtcacgg tttgcccacg
     4681 cgaaccaccg gcaaattcgc tttggcgatc gcgcgcacga attcgaatcg cgtctatgcg
     4741 ctgatcgaaa cgggcgacgg cgtgccttac aagggacagg aaaccgatcg cgggaaactc
     4801 tggcgctcag aagacggcgg cgagaactgg cgtctcgtta gttacgatcg cagtctcggc
     4861 ggacgcacgc attactactt tcgcgtggcc gtttctcccg ataacgaaaa cgagacttac
     4921 tttcttacgg cgggttacgc tgtc
//
LOCUS       DASZZE010000154         2299 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_230695, whole genome shotgun sequence.
ACCESSION   DASZZE010000154 DASZZE010000000
VERSION     DASZZE010000154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2299)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2299)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2299
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230695"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..393)
                     /locus_tag="VHD88_03115"
     CDS             complement(<1..393)
                     /locus_tag="VHD88_03115"
                     /inference="COORDINATES: protein motif:HMM:TIGR02777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase ligase N-terminal
                     domain-containing protein"
                     /protein_id="HVS20807.1"
                     /translation="MGLAEYKKKRRFNKTPEPGPEKKTSEMGNIFVVQKHRATQLHYD
                     FRLEADGVLLSWAVPRGPSMDPTVKRLAMHVEDHPVAYANFEGVIPEGEYGGGTVMVW
                     DFGIYGPENTNSVSKAIAKGELKFALLGQ"
     gene            complement(485..1336)
                     /locus_tag="VHD88_03120"
     CDS             complement(485..1336)
                     /locus_tag="VHD88_03120"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: protein motif:HMM:NF000594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HVS20808.1"
                     /translation="MPALDSLLAKSIPELKERFVVRQRSVPKGLVEALESDARQGAHH
                     LAKQIRERWRRNRAEGQRLHNLLRFEIELWEQGFNFIAGVDEAGMAPLAGPVVAAACI
                     LPQNYKLRGLNDSKQILDEALRYELAKQIKGDAIAWSVGRAEVEEIDTLNIYHAGLLA
                     MRRAVEGLASQPDFVLVDARRIPHCTAPQRGIIKGDTLSASIAAASIIAKTTRDALMC
                     EFDRVYAGYNFATHKGYPTPEHCRLLKELGAVAIHRRSFARVREALGLDPIQSELFEA
                     KAESAHG"
     gene            complement(1360..1695)
                     /locus_tag="VHD88_03125"
     CDS             complement(1360..1695)
                     /locus_tag="VHD88_03125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20809.1"
                     /translation="MTENKGREYCLIVEGAYLTEAEAEHALRDPFIEDWVEQTGHFKV
                     HNMDDIQVTPGVTLGSLGVVMLDDRMFEVASVDADHPLTKHKAKGIAEALRRQDMFDE
                     INVEPREET"
     gene            complement(1997..>2299)
                     /locus_tag="VHD88_03130"
     CDS             complement(1997..>2299)
                     /locus_tag="VHD88_03130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20810.1"
                     /translation="DGLDVSRGFDATTAGHTLDIDRAIREANKRDVAIYSFYAPSVGL
                     TSRSLLAATYGQSSLNRVSHDTGGMAFFQGMTGFVTFDSYFNRLREQLNRQYATAS"
BASE COUNT          473 a          654 c          642 g          530 t
ORIGIN      
        1 ctgccccagc aaagcgaatt tcagttcgcc tttggcgatc gctttcgaaa cgctgtttgt
       61 gttttcaggg ccgtagattc caaagtccca aaccatcact gttccgccgc cgtattcgcc
      121 ttcggggatc acaccttcaa agttggcgta ggccacaggg tgatcttcga cgtgcatcgc
      181 caagcgcttc acggtcggat ccatcgaagg gccacgcggg actgcccaag acaagagcac
      241 gccatcggct tcgagacgaa agtcgtaatg caactgcgtc gcccggtgct tctgcacgac
      301 gaagatgttg cccatctcgg aagttttctt ttccgggccg ggctcgggtg ttttattgaa
      361 gcgacgtttc tttttgtatt cggctagacc catcttcaag ttttaggctt cggtcgttta
      421 cccgcccgct accgcaggca gtactgacaa gacgccccga gcctcaagtc tctagtctca
      481 agtctcagcc gtgcgcggat tcggctttcg cttcgaacaa ctcgctttga attggatcga
      541 ggccgagtgc ttcgcgcacg cgagcaaagc tgcgacgatg aatcgccacc gcgccgagtt
      601 ccttcaacaa gcggcaatgc tccggcgtcg gatagccttt gtgcgtcgca aagttgtagc
      661 ccgcgtaaac ccgatcgaat tcgcacatca gcgcgtcgcg cgtagtctta gcgatgatcg
      721 aagcagcagc gatgctggct gagagcgtgt cgcctttgat gatgccgcgc tgcggcgccg
      781 tgcaatgagg aatgcgccgc gcatcaacca aaacaaaatc aggttgcgag gcgagacctt
      841 cgaccgcgcg tcgcatcgcc agcaaaccgg catgataaat attcagcgtg tcgatctctt
      901 cgacttcagc gcggccgacg gaccaagcga tcgcgtcgcc tttgatctgc tttgctaatt
      961 cgtagcgcag ggcttcatcc agaatctgtt ttgaatcatt caaaccgcgc agcttgtaat
     1021 tttgcggcaa gatacaggcc gcagcaacga ctggcccggc gagcggcgcc attcctgcct
     1081 cgtcaacgcc ggcgatgaag ttgaagccct gctcccataa ttcaatctcg aagcgcaaca
     1141 gattatgcag ccgctggccc tcagcgcgat tcctgcgcca ccgttcgcgg atttgttttg
     1201 cgagatgatg cgcgccctgg cgcgcgtcgg attccagcgc ttcgacgaga cctttcggaa
     1261 ccgagcgctg acgaacgacg aacctttctt taagttcggg aatagacttt gcgagaagtg
     1321 agtcaagcgc tggcatcagt tgttcgcagg aattgaactc taagtttcct cgcgcggctc
     1381 cacattaatt tcgtcaaaca tgtcttgacg ccgcaacgct tcagcgatgc ctttggcttt
     1441 gtgtttcgtc aacggatgat cggcatcgac gctggcgact tcaaacatgc ggtcgtcaag
     1501 catcaccacg cccagcgagc cgagggttac gcccggcgtc acttgaatgt cgtccatgtt
     1561 gtgaaccttg aaatgaccgg tttgctcgac ccaatcctcg ataaacggat cgcgcagcgc
     1621 atgttcggcc tcggcttcgg tcaggtaggc gccttcgacg atgaggcagt actcgcggcc
     1681 tttattctcg gtcatgattt tggaaacgac gcttctgacg agcgagcgag gcgcccgcat
     1741 tttccaatga gtaagcggtt gcagcttggg tggcggtcat gtcggaggtc agccgtttgc
     1801 acggtctcgc tgacctggaa ttgcgaaagc taaatgtacc accgcgcggc gcgaagcgcc
     1861 agattttttc ttagtggcgc ggactttaat ctgtgttcga ttgaaattca cagactgaag
     1921 tctgtgccac gcgaacaaga aggccgctgg aggacgtatc cttcagcggc cttggcgctt
     1981 gctggggcgc ttatctttac gaagctgtgg cgtattggcg gttgagttgc tcacgcagtc
     2041 gattgaaata tgaatcgaac gtgacgaagc cggtcattcc ctgaaagaag gccatgcctc
     2101 cggtgtcatg cgacacgcga ttcagcgaac tctggccgta agtcgccgcc agcaaactgc
     2161 gactggtgag accaactgac ggtgcgtaga acgagtagat cgcaacgtcg cgtttgttcg
     2221 cttctctaat tgcgcgatcg atgtcgagcg tgtggcccgc agtcgtcgca tcaaagccgc
     2281 gcgaaacgtc gagtccatc
//
LOCUS       DASZZE010000155         4509 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_149471, whole genome shotgun sequence.
ACCESSION   DASZZE010000155 DASZZE010000000
VERSION     DASZZE010000155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4509
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_149471"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1239)
                     /gene="dnaB"
                     /locus_tag="VHD88_03135"
     CDS             complement(<1..1239)
                     /gene="dnaB"
                     /locus_tag="VHD88_03135"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HVS20811.1"
                     /translation="MATPEPIRDPILERPLPSSPETERAILGAIILDNSLIAQAVELL
                     KPENFYVPSNRRIFTAMTALFERQSEINPILIAEELRRDNSLDSSGGVLFLTNLTYGL
                     PHVTSIAQYAKVVRGKYLLRQLVKVASKITAEALEEEDEPQNILDHAEHAIFALADER
                     IRQGFQHIKEPAERVLEKAESVEHRDLVVTGVATGFRGLDALTSGLQKQDFVVIAARP
                     SMGKTSLALTLAQHAAIEHKAVVGIFSLETSAESLAMRMLCSEASVDAQKFRSGYLSN
                     EEWSRLGKALGKLADARIFIDDTAAISVLEMRAKARRLAAEQKQLDLIVVDYMQLMSG
                     SARRFESRQQEVSQISRELKALAKELNVPMVALSQLSRAPENRTDHRPQLADLRESGA
                     IEQDADVVAFIYREEQYNRTD"
     gene            complement(1597..2160)
                     /gene="rplI"
                     /locus_tag="VHD88_03140"
     CDS             complement(1597..2160)
                     /gene="rplI"
                     /locus_tag="VHD88_03140"
                     /inference="COORDINATES: protein motif:HMM:TIGR00158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HVS20812.1"
                     /translation="MAHKQVLLREDIDNLGARGEVVRVKAGYARNHLLPRSLAVEATA
                     SNVKQIESERAALLKREAKERATADAQAEQLCDITLKFERKVGEAGVLYGSVTSMDVA
                     QALKDQGYEIDRRRIVLREPIKRFGNYTVPVRLHREVTVELPVNVLGEGGVEVDISEL
                     EAETGGEAATPEATAIEAKTRDSETDE"
     gene            complement(2208..2498)
                     /gene="rpsR"
                     /locus_tag="VHD88_03145"
     CDS             complement(2208..2498)
                     /gene="rpsR"
                     /locus_tag="VHD88_03145"
                     /inference="COORDINATES: protein motif:HMM:TIGR00165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HVS20813.1"
                     /translation="MSTNYEERDGGWEREYERAGMGRGPRRMQRRKICRFCIEKVDLI
                     DYKDLKLLQSYVPERGKILPRRISGVCAAHQRMLAEAIKRARNIALLPYAAD"
     gene            complement(2520..2942)
                     /gene="rpsF"
                     /locus_tag="VHD88_03150"
     CDS             complement(2520..2942)
                     /gene="rpsF"
                     /locus_tag="VHD88_03150"
                     /inference="COORDINATES: protein motif:HMM:TIGR00166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HVS20814.1"
                     /translation="MADKRTYEVVFIIDPAAAEDEVMGLSEAFQKIITGQGGIVVKTE
                     MMGRRQLAYEINHKREGIYVLLEVEGSGAEIAELERRMRVNDRVLRYMTIRVDDARRR
                     ADKLKDRRARKAAKRPSSGKAKAGDADADNEFEEGRAA"
     gene            complement(2955..3518)
                     /gene="pth"
                     /locus_tag="VHD88_03155"
     CDS             complement(2955..3518)
                     /gene="pth"
                     /locus_tag="VHD88_03155"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: protein motif:HMM:NF013368.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HVS20815.1"
                     /translation="MRLIVGLGNPGAEYEWSRHNLGFMLIDKLASDAAAAVRRRECRS
                     LVGSAAIESVRVRLAKPQTLMNLSGEAVACLIAKYDLPDVSSSLIVISDDLALPFGAI
                     RLRARGSAGGHNGLKSIIAAIGTNEFIRLRIGIQPDHTIEDAKSFVLDEFRRGQRREV
                     REVLERSTEALRAVLRDGIAKAMSLYN"
     gene            complement(3553..4245)
                     /locus_tag="VHD88_03160"
     CDS             complement(3553..4245)
                     /locus_tag="VHD88_03160"
                     /inference="COORDINATES: protein motif:HMM:TIGR00731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0008097 - 5S rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25"
                     /protein_id="HVS20816.1"
                     /translation="MAEKKDIIVRAVVREGRGKNDARRARRGGQVPVTMYGGGGEAVA
                     ALAQLRDLAAILRSDTGRNTIFTLEIEGVEATEVMFADRQIHPVRGRLVHADFKRLVK
                     GEKIEATVPLRLVGEPIGVREQAGVLEQIVREIEIRCEPREIPEALEVDVTNLGVHDV
                     LHVSDIPANEKIEILEDANAVIATVGIVKEEVVVAPPVEGEAPAEPEVIGKGKKEEEG
                     EAEAPEEKGKKE"
BASE COUNT          896 a         1384 c         1154 g         1075 t
ORIGIN      
        1 gtcagtgcgg ttgtattgct cttcgcgata aatgaaagcg accacatcgg cgtcttgttc
       61 gatcgcgccc gactcgcgca ggtcggcaag ctgcggccgg tgatcggtgc gattctcggg
      121 cgcgcgcgac aactgcgaca gcgccaccat cggcacgttc aattctttcg ccagcgcttt
      181 cagctcgcgt gagatttgcg aaacttcctg ctggcgcgat tcgaagcgcc tcgccgaacc
      241 agacattagt tgcatgtaat caactacgat caagtcgagc tgcttctgct cggccgctag
      301 ccgacgcgcc tttgcgcgca tttcgagcac tgaaatcgct gccgtgtcgt caatgaaaat
      361 ccgcgcgtcg gcgagcttgc ccagggcttt ccccagacgc gaccactctt cgtttgaaag
      421 ataaccgctg cgaaactttt gggcatcgac gctggcttcg gaacaaagca tgcgcatcgc
      481 gagcgattct gccgacgtct ctagcgagaa gatgccgaca actgctttgt gttcgatcgc
      541 cgcgtgctgg gcgagcgtca acgcgaggct cgtcttgccc atcgatggcc gcgcggcgat
      601 cacgacgaag tcctgtttct gcaagccgga agtcagggca tccaggccgc gaaatcccgt
      661 agccacgcca gttacgacca gatcgcggtg ctcaacggat tcagctttct cgagcactcg
      721 ctcggcaggc tctttgatgt gctgaaagcc ctgccgaatg cgctcgtcgg ccaaagcaaa
      781 gatcgcgtgc tcggcgtgat ccagaatgtt ctgcggctcg tcctcttctt ccagcgcctc
      841 agcggttatc ttgctggcaa ccttgacgag ctgacgcagc agatattttc cgcgcacgac
      901 tttcgcatac tgagcgatgc tcgttacgtg tggtagtcca tacgtcagat tagttagaaa
      961 cagaacaccg cccgatgaat ccaaagagtt atcgcggcgc aactcttcgg cgatcagaat
     1021 cggattgatt tcagattgac gttcgaacag tgcagtcatc gccgtgaaga tgcggcgatt
     1081 cgaaggcaca taaaagttct cgggcttcag cagctcaact gcttgcgcga tcaacgaatt
     1141 gtccagaatg atcgcgccga gaatggcgcg ctcagtttcg ggactgctgg gaagaggtcg
     1201 ctcgagaatc gggtcgcgga tcggttcagg cgtagccatt gaataagaac gacaagcaaa
     1261 taaattcgaa gattagatgc gaggcgcgaa ctatactaca cgagatagac gagttgataa
     1321 tgcggttctg ttttatcttt tcgatcgtga atttctattt gaatcgtcga ttctgaacga
     1381 caattcaacc agcctgcgaa gcaggcgata tataagtagc cacgggtgga gcggagcgga
     1441 acccgtggat cagcgacaag ataaaattga agcccgctga agcgggcttg aattccttca
     1501 cggttttgta cccagggttt cgctcgcttt gctcgcttca ccctgggcta aactctttcg
     1561 cctgcttcgc aggctcgttg agcaactctt ctgacgttat tcatccgtct cggaatctct
     1621 cgtttttgct tcaatcgccg tcgcttccgg tgtcgcagct tccccaccgg tttcagcttc
     1681 gagctcgctt atgtcaactt ccacgccgcc ttcgcccagc acattcaccg gcaattccac
     1741 cgtgacctcg cggtgcagac gcaccggcac ggtgtagttt ccgaatcgct tgattggttc
     1801 gcgcaaaact atgcgccggc gatctatctc atacccctgg tccttcaggg cctgggccac
     1861 gtccatcgac gtgaccgagc cgtaaagcac gccggcttca ccgacttttc gttcgaactt
     1921 caacgtaatg tcgcacagtt gttcggcttg cgcgtcggca gtagcgcgtt cctttgcttc
     1981 gcgcttcagc aaggccgcac gttcggattc gatctgcttg acgttgctgg ccgtcgcttc
     2041 aacggcgagg ctgcgcggca gcagatgatt ccgcgcatag ccggctttga cgcgcacaac
     2101 ttcaccgcgc gcacccagat tatcgatgtc ttcgcgaagc aaaacttgtt tatgtgccat
     2161 tgttcttaaa ctccatttgc attcacagac caaaatctgt gcaatttcta gtcagccgcg
     2221 tacggcaaca gtgcgatgtt gcgcgcgcgc ttgatcgctt cggccagcat gcgctggtgc
     2281 gccgcgcaca ctccagagat gcgccgcggc agaatcttgc cgcgctcggg aacgtaggat
     2341 tgcaggagct tcaaatcttt gtagtcgatc aaatcgacct tttcgatgca gaaacggcag
     2401 atttttcggc gctgcatgcg gcgcgggccg cgacccatgc ctgccctctc atactcgcgc
     2461 tcccatccac catcgcgctc ttcgtagttt gttgacatga attgttccct ttcgatctgc
     2521 taagcagctc gcccttcttc gaattcgttg tcggcgtctg catcgccagc tttagctttc
     2581 ccactcgacg gacgcttggc ggctttgcga gcgcgccggt ctttgagctt gtccgcgcgc
     2641 cggcgagcgt catccacgcg aatcgtcatg taccgaagca ctcgatcatt gacgcgcatg
     2701 cgacgttcca actcggcaat ctctgcgcct gagccttcga cttcgaggag cacatagatt
     2761 ccttcgcgct tgtggttgat ttcataagcg agctgccgcc ggcccatcat ctcggtcttg
     2821 acgacaatgc cgccctggcc cgtgatgatt ttctggaaag cttcgctgag ccccatcact
     2881 tcatcttcgg ccgccgcggg gtcgataatg aaaacaactt cgtaagttct tttgtctgcc
     2941 aaacctaacc tcctctagtt atacaacgac attgctttcg cgatgccgtc tcgtaagacc
     3001 gcgcgcaacg cttccgtgct tcgctccagc acttctctta cttcacgcct ttgtccgcgc
     3061 cgaaattcgt cgagcacaaa actcttcgcg tcttctattg tgtgatcggg ctgaattccg
     3121 attcgtagtc gaatgaactc gttggtccca atcgccgcga tgattgactt caagccgttg
     3181 tgtccgccgg cgctgccgcg cgcgcgcaaa cgtatcgcgc caaacggcaa agccaaatcg
     3241 tcgctaatca caatcagtga actgctgacg tcgggcaaat catatttcgc gatcaagcat
     3301 gcaaccgctt cgccgctcag attcatgaga gtctgcggct tcgccaaccg gacgcgcacg
     3361 ctttcgattg ccgcactgcc caccaacgag cgacattcgc gacgccttac tgcagcggcc
     3421 gcgtcacttg ccaacttgtc aatcaacatg aagccgagat tgtgtctcga ccactcgtat
     3481 tcagcgccgg gattaccgag tccaacaatc aaacgcattg ccaatcgcca actgccgaaa
     3541 tcggcaccct cgctattcct tcttgccctt ttcttccgga gcttcggctt cgccttcttc
     3601 ttccttcttg cccttaccga tcacttccgg ctcggccggt gcttcgcctt cgaccggcgg
     3661 tgcgaccacg acctcttcct tgacgatgcc cacggtagca atgacggcat tcgcgtcttc
     3721 gagaatctcg atcttctcgt tcgctgggat gtcggaaacg tgaagcacgt cgtgcactcc
     3781 aaggttcgtg acgtcaactt ccaaagcttc gggaatttcg cgcggctcac aacgaatctc
     3841 gatctcgcgg acgatctgtt ccaggacgcc agcctgctcg cgcacgccaa tcggctcgcc
     3901 caccaaacgc agcggcaccg tcgcttcgat cttttcgcct tttaccagcc gcttgaaatc
     3961 cgcatgcacc agccgcccac gcaccggatg gatctggcga tcggcaaaca tcacctcggt
     4021 ggcttcgacg ccttcaatct cgagcgtaaa gatcgtgtta cgacctgtat cggatctcag
     4081 aattgccgcg aggtcgcgca actgcgccag cgcagctacg gcctcgccgc cgccgccgta
     4141 catcgtcacc ggcacttgtc cgccgcgacg cgcgcgacgc gcatcgttct tgccacggcc
     4201 ttcgcgcacg accgcgcgca ctataatgtc tttcttctct gccatgattg ctcccgaaaa
     4261 atagtggcac aaactttagt ctgtgaacgt gcgtgcaacc acagactgac gtccgtgcca
     4321 caaatcctac tcaaattgtt ttgctgaaag ctgactgctg atagctggcg gctggttagc
     4381 tgacggctaa gctttcagtg tttgcccttc acacgaagag cgaagagacg ctggtctctt
     4441 catggatcga cttgatcgcc ttcgccaaaa gaggcgcaat actaaggacc tttatgttgg
     4501 tcatttccg
//
LOCUS       DASZZE010000156         4093 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_230708, whole genome shotgun sequence.
ACCESSION   DASZZE010000156 DASZZE010000000
VERSION     DASZZE010000156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4093)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4093)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4093
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230708"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(736..2088)
                     /locus_tag="VHD88_03165"
     CDS             complement(736..2088)
                     /locus_tag="VHD88_03165"
                     /inference="COORDINATES: protein motif:HMM:NF014774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heterodisulfide reductase-related iron-sulfur
                     binding cluster"
                     /protein_id="HVS20817.1"
                     /translation="MVSARSSNLATALSAEEEKLLACVHCGLCLEACPTYVATGDEND
                     SPRGRIYLMRAVEEGRLAAESSAFENHIDRCLGCRACEAACPAGVEYGQLLEAARAEI
                     MQARPRREVTYSFLKFVLRHVWLKPKRLRAAFALARFARDSGLARLLLKTKLAREISP
                     QFEFALALLDSSSGYRTGSGSDRLRTVPGNGSQDASAPSGVFLFKSCVTEGLFRRVNE
                     ATARVLEVNGCAVQAPVEQVCCGALHAHAGDLEGAHILARQNIEAFATNGEARDRPIV
                     TNAGGCGAMLMSYAHLLADDERYAERARDFSARVRDIGQQLEAIGFRNGAAIGSERTT
                     YDASCHLLHGQHGADASLQMLWAIPGLNFALLPDSDVCCGGAGVYNLLEPDLSAEVLA
                     EKLKNIEQSGAKVLTTGNAGCQMQIAAGAQLAGMSLRVCHPGELLDESYRRAGYYDDH
                     "
     gene            complement(2101..2358)
                     /locus_tag="VHD88_03170"
     CDS             complement(2101..2358)
                     /locus_tag="VHD88_03170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HVS20818.1"
                     /translation="MISMIDLKYSLTIEATSDPNFFGFYSPDLEGFTGIGHSIEDCLY
                     KAKWGMEEHVTLLADQRLPIPEPNPNPTLVVKNEAVLAPAA"
     gene            complement(2570..>4093)
                     /gene="ggt"
                     /locus_tag="VHD88_03175"
     CDS             complement(2570..>4093)
                     /gene="ggt"
                     /locus_tag="VHD88_03175"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF013206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HVS20819.1"
                     /translation="VAFALAVTHPAAGNLGGGGFMMIRLKDGRSTAIDYREMAPAAAT
                     RNIYLDKDGKVIEGEGGSIEGYRAVGVPGTVRGMELALKKYGSGKLTWAQLIEPARNL
                     ATGFAVNYSLARALRGSREYLSKYPETKRIYLNDGKFYNEGNVFRQPDLAATFARLQQ
                     RGPNEFYEGQTARLIVDDMKRHNGLINLEDMRGYVAKERETLRGNYRGYEIISMPPPS
                     SGGAVLIEMLNILEGYDFKKMDWASSDRYHLMTEAMRRAFADRAEYMGDTDFVKVPIA
                     GLTDKKYAAQLRNTINPERASSSEQVRAGKPVGYESDETTHFTVVDAEGNAVANTYTL
                     NNSYGSAVVAKGTGLIMNDEMDDFAAKPGTPNMFGLIQGERNAVAPRKRPLSAMTPTF
                     VLRKDGSLWFTVGSPGGPTIINTVLDVITNVIDYGMNIQQAIDAPRIHHQWLPDELVF
                     EPYGLSGDTQNALLARGHKLAKPRYLGDAEGIMIEEKTGVRLGATDPRRSDGLAVGY"
BASE COUNT          882 a         1205 c         1064 g          942 t
ORIGIN      
        1 tgctggacga tgaccgaaat gttcgcctcg cgatcatcgg cgggcggata gcctactctc
       61 aagagtagca cagggcggcc ctggcgcagg gtgcattaaa cctggaagct ttctctcatt
      121 cacacctggc ttcagccagg tgaatagatc tcgccggaga aaagaaaccg tttcaacggt
      181 ttccctcgtc tcaccattct aacccggagc gctcaacgaa gagttgatac tcgtcggcaa
      241 aagttttctt tcggtgatgc tcttcttggc gcgcaatgta gttggctact tgcccaacat
      301 cggagtgtga gacaagctcc atacccacgt ccccaggcga actttccctt gattatgcga
      361 ttctcgttta tccagtgacg agccaccttt gaaaaactgt atcagctgtt cgatcgtaag
      421 attcgtggga agatcaatca gtgcatgagt atgatcggca ttgaaatggt taatcttcat
      481 gtagattcct ttttcgcacg aatactcggt caaatatccc gatgctcgcg cagcagcccg
      541 ctggtttaac attggctcgc ggttgagagt ttcccagatt agatgcaacc agcagcgaga
      601 gtaagaatgt gttgacatgg tggagtacgt cctttccgaa ttgtgatatc tagctcaata
      661 gggaaaccat tgaaacggtt tgcgaagtag gtcgttgcct agtcacccgg ctgaagccgg
      721 gtgtgaataa aatccttagt gatcgtcata gtatcccgcc cgccgatacg attcgtccag
      781 caactctcct gggtggcaaa ctcgcaggga cattcccgcg agctgcgcgc cggcagcaat
      841 ttgcatctgg catccggcgt tgccggtggt caaaactttc gcgccactct gttcgatatt
      901 cttgagcttt tccgccaaca cttccgctga caagtcaggc tccagcagat tgtacacacc
      961 cgcgccgccg caacatacgt cgctgtctgg cagcagcgcg aaattcaaac ccggaatcgc
     1021 ccagagcatt tgcagggagg catcagcgcc atgctggcca tgcagcaggt ggcacgaagc
     1081 gtcgtaagtt gtgcgctccg atccaatcgc cgcgccattg cgaaaaccga tcgcttcgag
     1141 ttgctgccca atatcgcgca cgcgtgcgct gaaatcgcgc gctcgctcgg cgtatctctc
     1201 atcatcggcg agcagatgcg cgtaggacat tagcatcgcg ccgcaaccgc cggcatttgt
     1261 aacgatcggt ctgtctctag cttcgccatt cgtagcaaat gcttcgatgt tctgccgcgc
     1321 aagaatgtgc gcgccttcga ggtcgccggc gtgcgcatgc aacgcgccgc agcaaacctg
     1381 ctcgaccggc gcctgcaccg cgcagccatt cacttccaac actcgcgccg tcgcttcatt
     1441 cactcgccga aacaaacctt cggtgacgca ggatttgaag agaaatacgc cgctgggagc
     1501 gctcgcatcc tgcgagccgt tccccggcac cgtacgtagc cggtcgctac cgctcccggt
     1561 tctgtaaccc gacgagctat caagcagcgc cagcgcgaac tcaaactgcg gcgaaatttc
     1621 gcgtgcgagt ttagtcttca gcagaagccg cgccagacca ctgtctcgcg cgaaacgcgc
     1681 gagtgcgaaa gccgcgcgca atcgtttcgg tttcaaccac acgtgacgca gcacaaattt
     1741 gagaaatgaa taagtaactt cgcggcgagg tcgcgcttgc atgatctcag cacgcgccgc
     1801 ttccagcaat tggccatact caacgcccgc cggacaggcg gcttcgcacg cgcgacagcc
     1861 tagacaacga tcaatgtgat tttcaaatgc cgaagattca gccgccaacc gcccttcttc
     1921 gaccgcgcgc atcagataga tgcgcccgcg cgggctgtcg ttctcatcac cggtagcgac
     1981 gtaagtcggg cacgcttcca gacagagccc gcaatgaacg caggcgagaa gcttttcttc
     2041 ttcggcagaa agcgctgtcg cgaggttact tgaccgggca gataccatta cttcatgggg
     2101 ctaagcagca ggcgctagca ctgcttcgtt tttaaccact aaggtgggat tgggattggg
     2161 ttctggaata ggaagtcttt ggtcagcaag caacgtaaca tgctcttcca ttccccactt
     2221 cgccttatac aaacagtctt caattgaatg tccgattccg gtgaaacctt cgagatccgg
     2281 cgaataaaat ccaaagaagt ttggatctga ggtggcttcg atagttaatg aatacttaag
     2341 atctatcatt gagatcacgt ctctttgatt ccggctcctt taagaatagc atgacacgta
     2401 cctgttggaa cttctttcgt gccatgaaaa tcaacgcgaa tcaatcttcc atggctcttt
     2461 tgacataata acgtatggat cccttttctt tcaccaactg aaagccgttc ttctcaagca
     2521 ggcggataag ttcgctgaac ttcattgagc ctccttaaag aaggatcgac taatacccaa
     2581 ccgccaaacc gtcactcctg cgtggatcgg tcgcacctag acgcacaccg gttttctctt
     2641 cgatcatgat gccttcggcg tcgccgagat agcgtggctt ggcaagtttg tggccgcgag
     2701 cgagcagagc gttctgtgtg tcacccgaca gtccgtaagg ttcgaacacc agctcgtccg
     2761 gcaaccattg atgatgaatg cgcggcgcgt cgatggcctg ctgaatgttc atgccgtaat
     2821 cgatcacgtt ggtgattacg tcgagcaccg tgttgatgat tgtcggcccg ccgggactgc
     2881 cgaccgtgaa ccagaggctg ccgtctttgc gcagcacgaa cgtcggcgtc atcgcggaca
     2941 acgggcgctt gcgcggcgcc acggcgttgc gctcgccctg aatcaaaccg aacatgtttg
     3001 gcgtgccggg cttcgcggcg aagtcatcca tctcgtcgtt catgattagc cccgtgccct
     3061 tcgcgaccac cgccgagccg taagagttgt tcaaagtgta agtgttagca accgcgttgc
     3121 cttcggcatc gacgacggta aagtgggttg tctcgtctga ttcgtaaccg accggcttcc
     3181 ctgctcgcac ctgttcgctc gaagatgcgc gttcgggatt gatcgtgttg cgcaactgcg
     3241 cggcgtactt tttgtcggtc aagcccgcaa tcggaacctt tacgaaatcg gtgtcgccca
     3301 tgtattcggc gcgatcggcg aacgcgcgac gcatcgcctc ggtcatcaag tgataacgat
     3361 cggacgacgc ccaatccatc ttcttgaaat catagccttc cagaatgttt agcatttcga
     3421 tcagcaccgc gccccccgac gaaggcggcg gcatcgagat gatttcatag ccgcgataat
     3481 tgccgcgcaa agtctcgcgt tctttggcga catagccccg catgtcttcc aaattgatca
     3541 ggccgttgtg gcgcttcatg tcatcgacga tcaatctcgc cgtctggcct tcgtagaatt
     3601 cgttgggacc gcgctgctgc aagcgcgcga acgtcgccgc caaatcaggc tgacgaaaca
     3661 cattgccttc gttgtaaaac tttccgtcgt tgagatagat gcgcttcgtt tcaggatact
     3721 tcgaaagata ctcgcggctg ccacgcagcg cgcgcgcgag cgagtaattc acggcgaagc
     3781 ctgtcgccag atttcgtgcg ggttcgatca gttgcgccca cgttagtttg cctgaaccgt
     3841 atttcttcaa cgccaattcc atcccgcgca cggtaccggg cacgcccacg gcgcgataac
     3901 cttcgatcga cccgccttcg ccttcgatca ctttcccgtc tttatccaga taaatatttc
     3961 gcgtcgccgc tgccggcgcc atctcgcgat agtcaatcgc cgtactgcgc ccgtctttca
     4021 aacgaatcat catgaagccg ccgccgccga ggtttcccgc cgctggatga gttacggcca
     4081 gcgcgaacgc gac
//
LOCUS       DASZZE010000157         2256 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_230749, whole genome shotgun sequence.
ACCESSION   DASZZE010000157 DASZZE010000000
VERSION     DASZZE010000157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2256)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2256)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2256
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230749"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(106..1437)
                     /locus_tag="VHD88_03180"
     CDS             complement(106..1437)
                     /locus_tag="VHD88_03180"
                     /inference="COORDINATES: protein motif:HMM:NF005557.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-deoxyadenosine deaminase"
                     /protein_id="HVS20820.1"
                     /translation="MGESILIKGGTIVTMDASDSIVRGDLLIRDGRIADIGDNVDADF
                     EETIDAEGCAVLPGFIHTHLHLCQTLFRGAADDLSLIDWLKKRVWPMEAAHTPESIRA
                     SARLGIAELIKGGTTCALTMETVRHTEEVLRVVEESGFRATVGKCMMDKGNDLPSELR
                     EETHESIKESLALIQQWGGKGDGRIRCCFAPRFAVSCTRELLTEVSKLARESDVMVHT
                     HAAENKNECEIVERETGMRNVAYLDSLGMSGAHVMLAHCVHLDDQEMETLARTKTNVA
                     HCPSSNLKLGSGIARVAEMLERGVSVSLGADGAACNNRLDMFTEMRTAALLQKALRGP
                     EVLPAARALRIATIDGARALGLEKEIGSLETGKRADVIVVDLARPHSSPRRDDVVSTL
                     VYSAQASDVRTTIIDGQVVMRAGELVTLNEASVIEAANREARSLASRAGIS"
     gene            complement(1561..>2256)
                     /gene="recA"
                     /locus_tag="VHD88_03185"
     CDS             complement(1561..>2256)
                     /gene="recA"
                     /locus_tag="VHD88_03185"
                     /inference="COORDINATES: protein motif:HMM:TIGR02012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008094 - ATP-dependent activity, acting
                     on DNA [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HVS20821.1"
                     /translation="QALEIAEALVRSNGVDVIVVDSVAALVPRAELDGEMGDSLPGLQ
                     ARLMSQALRKLTAIVAQSNTCFIFINQIRMKIGVMFGNPETTSGGRALKFYASLRLDI
                     RRIGAIKDGDRVVGNRTKVKVAKNKVAPPFREAEFDIMYGEGISREGDLLDLATQHRV
                     VEKSGAWFSYKGDRLGQGRENSKQTLKDHPEVMQRIENDVKRALGLPVREQTAEAAPA
                     EQKRAAAATAEKK"
BASE COUNT          441 a          720 c          587 g          508 t
ORIGIN      
        1 cacgggcttc tgttccattt ctcatcgttt acccagcgct gaagcgctgg gctattttcg
       61 ttcgtccgct tcgcggactc cacttccttc taactatgag ccaatttacg agattcctgc
      121 tcgtgaggct agactcctcg cttcgcggtt tgccgcttca atcacgctcg cctcattcaa
      181 cgttaccaat tcgccggcgc gcatcacaac ctggccgtcg attatcgttg tccgcacgtc
      241 tgaagcctgc gccgagtaaa ccaaagtcga aacaacatcg tcacgtcgcg ggctggaatg
      301 cggccgcgcg agatcgacaa cgattacgtc tgcgcgtttg cctgtctcca gactgccgat
      361 ttccttttcg agacccagtg cgcgagcacc gtcaatcgtg gctatacgca acgcgcgcgc
      421 ggctggcaag acttccggtc cgcgcagagc tttctgcagc aaagcagcag tgcgcatctc
      481 ggtaaacatg tccaggcggt tattgcacgc cgcgccgtct gctccgaggg aaactgaaac
      541 gccgcgttcc agcatctctg ccacgcgcgc gatgccggat ccgagtttaa gatttgacga
      601 agggcagtgc gctacgttcg tcttggtgcg cgcaagtgtc tccatctctt ggtcgtcaag
      661 atgaacgcag tgcgcgagca tgacgtgcgc acctgacatg ccgagcgaat caagatacgc
      721 gacattgcgc attccagttt cacgctcgac aatctcgcat tcgttcttgt tttcggcagc
      781 gtgagtgtga accatcacat cgctttcgcg ggccagcttt gaaacttcgg tgagtaattc
      841 gcgcgtgcaa ctaaccgcaa agcggggagc gaaacagcag cgaatccgac cgtcgccttt
      901 gccaccccat tgttgaatca atgccaagga ttctttgatc gattcgtgcg tttcttcgcg
      961 cagctcgctg ggaagatcgt tccctttgtc catcatgcat ttgccgaccg ttgcgcggaa
     1021 tccgctttct tcaacgacgc gcaaaacttc ttccgtgtga cgcaccgttt ccattgtcag
     1081 cgcgcaggtc gtgccgccct tgattagttc ggcaattccc agacgcgccg acgcgcgaat
     1141 cgattccggc gtgtgcgcag cctccatcgg ccacacgcgt ttcttcagcc aatcgatcag
     1201 cgatagatcg tcagccgcgc cgcgaaacag agtctggcaa agatggagat gcgtatggat
     1261 aaagcccggc agcaccgcgc agccttccgc gtcgatcgtc tcttcaaaat cggcatcgac
     1321 attgtcgcca atgtctgcga tgcgcccgtc acgaatcagc agatcacctc gaacgatgga
     1381 atcgcttgcg tccatcgtca cgatcgtgcc gcctttgatc agaatcgatt cgcccattgt
     1441 ccacggatca agccgcgcgg attatgcgcc gcagcacccg gcctgtaaag acacaaataa
     1501 gcgcccggcc accatgactt ctagagatgg caaccggacg ctttcaagaa cccgatttga
     1561 ttacttcttc tctgccgtgg ccgcggccgc tctcttctgt tccgcgggcg ccgcttccgc
     1621 ggtctgctcg cgtaccggca gcccgagcgc gcgcttcacg tcgttctcga tgcgctgcat
     1681 tacttcggga tgatccttca gagtctgctt ggaattctcg cggccctgcc ctaaacgatc
     1741 gcctttgtaa gagaaccacg cgccagattt ttccacgacg cgatgttgag ttgccagatc
     1801 gagcaagtcg ccttcgcgcg agatgccttc gccgtacatg atgtcgaact cggcctcgcg
     1861 gaacggcggc gcgactttgt tcttcgctac tttcaccttc gtgcgattgc cgaccacgcg
     1921 gtcgccgtcc ttgatcgcgc cgatacgcct gatatcaagt cgcagcgacg cataaaactt
     1981 caacgcgcgg ccgcccgatg tcgtttccgg attgccaaac atcacgccga tcttcatacg
     2041 gatctgattg atgaagatga agcaagtgtt tgactgcgcg acgatcgccg tcaacttgcg
     2101 caacgcctgc gacatcagac gggcttgcaa tcccggcagc gaatcgccca tttcaccgtc
     2161 gagttccgcg cgcggcacca gcgcggccac cgagtcaacg acgatcacgt caacgccgtt
     2221 ggatcgcacc aaagcttccg cgatctccag cgcctg
//
LOCUS       DASZZE010000158         3504 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_167545, whole genome shotgun sequence.
ACCESSION   DASZZE010000158 DASZZE010000000
VERSION     DASZZE010000158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3504
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_167545"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..984
                     /locus_tag="VHD88_03190"
     CDS             <1..984
                     /locus_tag="VHD88_03190"
                     /inference="COORDINATES: protein motif:HMM:NF036531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20822.1"
                     /translation="KDGRAKEVANTIEGAAQKDEFEAHWQTARVNDYGRDVYLDNEAT
                     ALSLKALSQINPNSSLLPKVARWLVKNRNNGYYWLSTKETAFAIYGLTDYLKVSHELS
                     PDYTFEVYLNGAQVASQHVGAADATNAQALVITKKAGEVGNSNQVRIVKHGRGALYVS
                     TAVEYFTAEDNVAAQSSPTLKITREYLRLRVVENEGGKPSWHVEPLTGELRSGDLIVV
                     RLLLEGARAQYLMIEDPIPAGAEQVAQVSGIYLNYSTGQWTDWYSNREFRDNRTVIFK
                     NYFDGKATFQYAMRVEVPGEFRIAPAQADLMYQPTVQANTSNDRLRILDKK"
     gene            1140..1994
                     /locus_tag="VHD88_03195"
     CDS             1140..1994
                     /locus_tag="VHD88_03195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20823.1"
                     /translation="MIIATLRTWFEAIRALLTNAKSLAIFAGLYALLLATLYGFIATR
                     EATVWQVAITLLGLVLLPAEFFIFQAAIVDRARDSRFRWRAILIDACKLFVVTIPTLI
                     IAYVLWLLLNKWQVHFPAPKAAIAFPPAPLKPQPVHWPTLLFATLRCLLFGIALPLAT
                     IHLWIEVASHDLKTLFVGGAKAILKRIGCVFARAFSSNSVLTYALGLIIFVAIPYALL
                     FIPITIKGNKTEFAVFILRLVLVFAFTLFGWIVTVGALARLPRENTPAVDSPSEAKPL
                     ELSEEPTG"
     gene            2159..>3504
                     /locus_tag="VHD88_03200"
     CDS             2159..>3504
                     /locus_tag="VHD88_03200"
                     /inference="COORDINATES: protein motif:HMM:NF013100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HVS20824.1"
                     /translation="MDPPVAFENEIDKALQQAATAALGQREGAIIVMDPQTGRVRAVG
                     NPHVAFSEAVMPGSTIKPFTALAALRSGLIDTNSRTVCPGRFTGLSFSVACVHDNKLP
                     PFSPSQAIAYSCNYYFGTLGERLGRDKLIDALRTFGFGQPTALSDERGTLLPCEAGNN
                     AKIRSEAKGQADCNAREAIGESDHFTVTPIQLLAAYAALVNGGRLLEPRVANANEFEP
                     AERGRVDIAPQHRAIITEGMLGAVRYGTAKSAHLDSVSLSIIGKTGTSLPAKGFRTNG
                     WFVGFASPAPESSGPTGEPDPGKIDLAVLVFLPRSHGAEAAALAKPIFEAFANETKNV
                     HRRDAEERRGSAEQTLPNSAIRNSQSAIKVHLVTENITQELSLEDYVLGVMRAEGSME
                     TEPEALKALAIAIRTYAVKNHGRHAKDGYDFCTTTHCQRFLPGGVRSPRVSKGSDD"
BASE COUNT          730 a         1008 c         1019 g          747 t
ORIGIN      
        1 aaggacggcc gcgcgaagga agttgccaac accatcgaag gtgcggcgca gaaggatgaa
       61 ttcgaagcgc attggcagac ggcgcgggtc aacgactatg gccgcgacgt ttacctggac
      121 aacgaagcga ccgcgctttc attgaaggcc ctgtcgcaaa tcaacccgaa cagcagcttg
      181 ctgccaaagg ttgcgcgctg gctggttaag aaccgcaaca acggttacta ctggctctcg
      241 accaaggaaa cggcgttcgc gatctatggc ttgacggatt acttgaaagt cagccacgaa
      301 ctctcgccgg attacacctt cgaagtttat ttgaacggcg cgcaggtggc ttcgcaacac
      361 gtcggtgccg ccgatgcgac gaacgcgcag gcgctggtca ttacaaagaa agcgggcgaa
      421 gtcggcaact caaatcaagt tcgtatcgtc aagcacggcc ggggcgcgct gtatgtctcg
      481 accgcggtcg aatacttcac cgccgaggac aacgtggccg cgcaatcgtc gccgactctg
      541 aagatcacgc gcgagtatct gcgcctgcgc gtggtcgaga acgaaggcgg caagccgagc
      601 tggcacgtcg aaccgttaac gggcgagttg cgctcgggcg atctgatcgt cgtgcggctg
      661 cttctggaag gcgctcgcgc tcagtacttg atgatcgaag atccgattcc ggcgggcgcc
      721 gagcaggtcg cgcaggtcag cgggatctat ctgaactatt caaccggaca atggaccgat
      781 tggtatagca accgcgagtt tcgcgacaac cgcaccgtga tcttcaagaa ttactttgac
      841 ggcaaagcga cgttccaata cgcgatgcgc gtcgaggtgc ccggcgaatt tcgcattgcg
      901 cccgcgcagg cggatttgat gtaccagccg accgtgcaag cgaacacgag caatgaccgg
      961 ttgagaattc tggacaagaa gtgacgaccg cgatgccgat cttaaccgca gaggaacgcg
     1021 gaggtttacg caaaggtcgc ggaggaaaag cctttgcggc tctctgcgaa atcctctgcg
     1081 tcctttgcgg ttgaaaaatt tgattgaatg actcgacgac ggcacttaac gaggcaacta
     1141 tgatcatagc aactctaaga acctggtttg aagcaataag agcactactg acaaacgcca
     1201 agtcattggc catcttcgcc ggcctttacg cgctgctgct tgcgacgctc tacggcttta
     1261 tcgcaacgcg cgaggcgact gtctggcagg tggcgatcac actgcttggt ctggtgctgt
     1321 taccggctga gttcttcatt ttccaggccg cgattgtaga ccgcgcccga gattcaaggt
     1381 ttcgctggcg ggcgattctg attgatgcgt gcaagctctt tgtcgtgacg attcccactc
     1441 tcatcatcgc ttatgtgctt tggcttttgc tgaacaagtg gcaggtgcac ttccccgccc
     1501 cgaaggcggc gatcgcgttc ccgcccgcgc cgcttaaacc gcagccggtt cattggccaa
     1561 ctttgctctt tgccacgctg cgttgtctgc tgtttgggat cgcgctcccg ctggctacga
     1621 ttcatttgtg gatcgaagtt gccagtcacg atctaaagac gctgttcgtg ggcggcgcca
     1681 aggcgattct caaacgaatc ggctgcgtgt tcgctcgtgc attttcgtcg aattcagtct
     1741 tgacctatgc gcttggcttg atcatctttg tcgcaattcc ttacgcgctg ctgttcattc
     1801 caatcacgat caagggtaac aagaccgagt tcgcggtttt cattctccgg ctcgtgctcg
     1861 tctttgcgtt cacgctgttc ggttggattg tgactgttgg cgcgctggca aggctgcccc
     1921 gcgaaaacac gccggctgtg gactcaccat cggaagcgaa gcctttggaa ttgtcggagg
     1981 aaccaaccgg ttgatccgat ctgctaagtc tctgcgcgtt ctcggcgacg cttgcgtatc
     2041 tgcggtgaat tgttgcgccg tctcagtccg accgcttctt gattcacgac gagctcaggc
     2101 tttcgtgctc ttgtcggcga gcatcctcac ttcactctcc ggttccactc ctcaccggtt
     2161 ggatccgccc gtcgctttcg aaaatgaaat tgacaaggcc ttacagcagg ctgcgaccgc
     2221 ggcactcggc cagcgcgaag gcgcgatcat cgtgatggat ccgcaaaccg ggcgcgtgcg
     2281 cgcggtggga aatccgcatg tcgctttttc ggaagcggtt atgcccggct cgacgataaa
     2341 gcctttcacc gcgttggcgg ctttgcgctc cgggttgatt gacaccaatt cgcggacggt
     2401 atgccctgga cgattcacgg ggctcagctt ttccgtcgcc tgcgtgcacg acaacaagct
     2461 ccctccgttt agtccatcgc aggcgattgc ttattcgtgc aactactatt tcggcacgct
     2521 cggagagcgt ctgggccgcg acaagttgat cgacgcgttg cggacgttcg gctttggaca
     2581 accgactgcc ttaagcgacg agcgaggaac actcctgcca tgcgaagcgg gaaacaacgc
     2641 caagattcgc tcagaggcga aagggcaggc cgactgcaac gcgcgcgaag cgatcggtga
     2701 aagcgatcac tttaccgtga cgccgattca gttgctcgcc gcttatgccg cgctggttaa
     2761 cggcggacgc ttgctcgagc cgcgcgtggc caacgcgaac gagtttgagc ccgccgagcg
     2821 cggtcgggtc gacatcgcgc cacagcaccg cgcaattatc acggaaggca tgctgggcgc
     2881 ggttcgttac ggcacggcga agagcgctca cctggattca gtttcgcttt ccattattgg
     2941 caaaacgggc acttcacttc ccgcgaaagg ctttcgcaca aatgggtggt tcgtgggctt
     3001 cgcgagtccg gctcctgaat cgtcaggacc aaccggcgag cctgatcctg gcaagattga
     3061 tcttgcggtg ctcgttttcc ttccgcgttc ccacggcgcc gaagcggcgg cgctggcaaa
     3121 gccgatattc gaagcgttcg ccaacgaaac gaaaaacgtt caccgcagag acgcagagga
     3181 gcgcagagga agcgcagagc aaacactccc taattccgca atccgcaatt cccaatccgc
     3241 aatcaaggtc catttggtca ctgagaacat cacgcaggaa ctgtctctgg aagattacgt
     3301 gctcggcgtg atgcgcgccg aaggcagcat ggaaactgag ccggaagcgc tgaaagctct
     3361 cgccattgcc attcgaacct atgccgtgaa aaaccacgga cgtcacgcga aagatggtta
     3421 cgacttctgc acgacgacgc attgccagcg attcttaccg ggcggtgtca gaagcccgcg
     3481 cgtaagcaag ggctccgatg atga
//
LOCUS       DASZZE010000159         5315 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_314819, whole genome shotgun sequence.
ACCESSION   DASZZE010000159 DASZZE010000000
VERSION     DASZZE010000159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5315)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5315)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5315
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_314819"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            234..1796
                     /locus_tag="VHD88_03205"
     CDS             234..1796
                     /locus_tag="VHD88_03205"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HVS20825.1"
                     /translation="MVQAKKALARKSRKSPAQAATRARVNTYHNYIGGRWMPSASGDW
                     IENRNPADTRDVVGRFPLSTKEDVRAAVSAARAAFNHWRLTPAPRRAEILFRVGEILI
                     RDKEKYTADMTREMGKVLKEAGGDVQEAIDCTYYAAGEGRRLHGFTTPAEMPNKFAMC
                     VRQPVGVCGLITPWNFPMAIPSWKLIPALVCGNTVVIKPAEDTPLSTYNLVKACEEAG
                     VPPGVVNLVTGYGETVGAEITANTALRLISFTGSTDTGRLVASACADRNAICSLEMGG
                     KNVIIVMDDADVDNAIEGAVWGAFGTSGQRCTASSRIVVHKKVYRQFAKKLIERAKSL
                     RVGNGADPKTEVGPVINEDAVHKIMSYIDIGQHEDRATLACGGRHLTKGDYARGYFIE
                     PTVFTDVAPNMRVAQEEIFGPVTSVIPTNSLDEAIEIANGVRYGLSAAIYTQDVNRAF
                     HAMNETYTGIFYVNASTIGAEVHLPFGGTKATGNGHREAGTQVLDIFTEWKSVYFDYS
                     GKLQRAQIDNVE"
     gene            1829..2191
                     /locus_tag="VHD88_03210"
     CDS             1829..2191
                     /locus_tag="VHD88_03210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20826.1"
                     /translation="MLLSVIHSAAYSQSGRVKRPAQKPTIVTPVPVDTSSSRPKKVRP
                     AENVDGERICVGKELDSKAIILKKPTPGDTREARRHSFRGTVVLQAILAANGEVTHIT
                     VISRLPYGLTEKAIEAAP"
     gene            2407..4206
                     /gene="lepA"
                     /locus_tag="VHD88_03215"
     CDS             2407..4206
                     /gene="lepA"
                     /locus_tag="VHD88_03215"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor 4"
                     /protein_id="HVS20827.1"
                     /translation="MDPSRIRNFSIIAHIDHGKSTLADRLLELTGAVTGRDMSAQILD
                     DMDLERERGITIKAHAVRLDYKAQDGQSYILNLIDTPGHVDFSYEVSRSLSACEGALL
                     VVDASQGVEAQTLANTYLAIENNLELIPVINKIDLPGADPERAIEEIKHFIGLETHNA
                     ILTSAKTGEGVSEVLEAIVRDVPSPKGDASAPLKALIFDSWYDSYRGVIVLFRVIDGV
                     IRPGMKIRFFNAGRDYQVETLGVNRPRPAPIDELGVGEVGFLTASIKAVADVQIGDTV
                     TESARPTKEPFPGYQEIKPMVFAGLYPIDTNQYEELRDALDKLRLNDASFFYEPESST
                     ALGFGFRCGFLGLLHMEIVQERLEREFNLDLITTAPSVRYLVTTTDGDKAEIDSPAKM
                     PEAVRITKIEEPIIRATILTPDEYLGGILPLLEEKRGTQKGFEYITTTRVMLTYELPL
                     NEIVLDFYDRLKSVSRGYASLDYNLAGYRESDLVKLDILVASEPVDALSLILHRDTAQ
                     AKGRALAEKMKQLIPRQLFEVPIQAAIGNKVIARETVKALGKNVIAKCYGGDITRKRK
                     LLEKQKEGKKRMKKVGRVEIPQEAFLAVLKVNE"
     gene            complement(4216..4881)
                     /locus_tag="VHD88_03220"
     CDS             complement(4216..4881)
                     /locus_tag="VHD88_03220"
                     /inference="COORDINATES: protein motif:HMM:NF020419.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyl transferase AbiEii/AbiGii toxin
                     family protein"
                     /protein_id="HVS20828.1"
                     /translation="MRDGEGVLFQSMLNAGALTFEEFAMREPLPLATIHDAVLEFLRG
                     REDAVVFGAQAVNAYVGEPRMSQDIDLISTRATELAEELREYLSERFHIAVRVRMIGA
                     GKGYRLFQIQKPRNRHLVDFRAAESLPRAERIEDVLVMSPPELIAHKVIAYHARRGQP
                     KAGTDWRDLALLLLTFPELKQEEGAVSEALKSIGATEGVMKTWRELIAQELIEPDDDG
                     EFE"
     gene            4996..>5315
                     /locus_tag="VHD88_03225"
     CDS             4996..>5315
                     /locus_tag="VHD88_03225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20829.1"
                     /translation="MKKVVIIAWLLLVSGTIVAQHSDMQMKTTAEKPATLMSGLGSIH
                     HPVSTSNTEAQRFFDQGLSLVFAFNHDEAIRSFKRAAELDPEMAMAWWGIALALGPNI
                     NLDV"
BASE COUNT         1208 a         1484 c         1507 g         1116 t
ORIGIN      
        1 caaccgcgtg cccgtagcga cgctggctga gtttcagcgc gttatcgatt cgctgaagcc
       61 gggcgatgcg gtcgtgctca acctttcgag ttatgaccgg cctacggatc gcatcgcgtc
      121 gcggattgtt cagttcactt atcaataggg tgaagggtat agggtgaagg gtgtagcagt
      181 tagtttagtg aaacgactac accctaaacc caacccccta agccctcacc gccatggttc
      241 aggcaaagaa agcactcgcc aggaaatcca gaaagtctcc ggcgcaagcg gcgactcgcg
      301 cgcgcgtcaa cacctatcac aattacatcg gcggtcgctg gatgccgagc gcgagcggcg
      361 actggatcga gaaccgaaat cccgccgaca ctcgtgatgt cgtcgggcgc tttccgcttt
      421 ccaccaaaga agatgttcgc gccgccgtca gcgccgcgcg cgcagccttt aatcactggc
      481 gactgacgcc cgcgccgcgc cgcgcagaga ttctgtttcg cgtcggcgag atcctgatcc
      541 gcgacaagga gaagtacacc gcggacatga cccgcgagat gggcaaggtt ttgaaagagg
      601 cgggcggcga cgttcaggaa gcgatcgatt gcacttacta cgccgccggc gaaggacggc
      661 gcttgcacgg cttcacgacg ccggctgaga tgcccaacaa gttcgcgatg tgcgtgcggc
      721 aacctgtcgg cgtgtgcggc ttgattacgc cgtggaattt tccgatggcg attccgtcgt
      781 ggaagctaat ccccgcgctg gtgtgcggca acaccgtcgt catcaagccc gcggaagaca
      841 cgccgctctc aacgtacaat ctggtcaaag cgtgcgaaga agccggcgtg ccgcccggcg
      901 tcgttaatct ggtgacgggt tatggcgaaa cggtcggcgc tgagatcact gcgaatactg
      961 ccttgcgttt gatttcgttc accggctcga ccgacaccgg acgcctggtc gcgtctgcgt
     1021 gcgcggaccg caacgcaatt tgttcgctgg agatgggcgg gaagaacgta atcatcgtga
     1081 tggacgacgc cgacgtcgac aacgcgattg aaggcgcagt ctggggcgcg ttcgggactt
     1141 cgggtcagcg ctgcacggca tcgtcgcgca tcgtcgttca taagaaggtc tatcgccagt
     1201 tcgcgaagaa actgatcgag cgtgcgaagt ctctgcgcgt cggcaacggc gccgatccaa
     1261 aaactgaagt tggtccggtg atcaacgaag acgccgtgca caagatcatg agttacatcg
     1321 acatcggcca acatgaagat cgcgccacgc tcgcttgcgg cgggcgccat ctgacgaaag
     1381 gcgattacgc gcgcggatat ttcatcgagc cgactgtctt cactgacgtc gctccaaaca
     1441 tgcgcgtcgc ccaggaagaa atctttgggc cggtaacttc ggtgattccg acgaactctc
     1501 tggatgaagc gatcgagatc gcgaacggcg tgcgctatgg tttgtcggcg gccatctata
     1561 cacaggatgt gaaccgtgcg tttcatgcga tgaatgaaac ctacaccgga atcttttacg
     1621 taaacgcatc gacgatcggc gcggaagttc atctgccatt cggagggacg aaggcgaccg
     1681 gcaacggaca tcgcgaggcg ggcacgcagg tcctggacat cttcacggaa tggaagtcgg
     1741 tttacttcga ttacagcggc aaactacagc gcgcgcagat tgataatgtt gagtgatgcg
     1801 ccggacaacc attagcgctg gcgttctctt gctgctatca gttatccact ccgcggctta
     1861 cagccagtct ggtcgcgtca aacgcccggc ccaaaagccg acaattgtca caccagttcc
     1921 tgttgatacc tcttcctcca gacccaaaaa agtcagacct gccgaaaatg tggacggcga
     1981 gcgcatctgc gtcgggaaag aactcgacag caaagcgatc atcttgaaga agccgacgcc
     2041 aggcgacaca agagaagcca gaaggcatag ctttcggggt acggttgtgc tccaggcaat
     2101 cctggcggcg aatggagagg tgactcacat cacggttatt tcccgacttc catatggcct
     2161 gactgaaaag gccattgagg cagccccctg atcaagtttc agcctgcaat gaaagacggc
     2221 aagcccgtct cagaatgggt tcgaatcgaa tatttctcct ggtatatttg atccccgtca
     2281 agccctcgtg cggttgagcg cgtttcgttg cttcaacctg taactcgcac gtcgtcagtt
     2341 gcaaaatcct cttcgttccc attaactaac taccgacaac tgactactga ccactgacaa
     2401 tcgcaaatgg atccatcccg cattcgtaac ttttcgatca tcgcgcacat tgatcacggc
     2461 aagtccaccc tcgcggatcg tctgctggag ctaaccggcg cagtgacggg ccgcgatatg
     2521 tctgcgcaga tcctggacga catggatctc gagcgcgagc gcggcatcac gatcaaagcg
     2581 cacgcggtgc ggctggacta caaagcccag gatggtcagt cgtacatctt gaatttgatc
     2641 gacacgcccg gtcacgtcga tttttcttac gaagtctcgc gttcgttgtc agcctgcgaa
     2701 ggcgcgctgt tggtggttga cgcttcccaa ggcgtcgaag cgcagacgct ggcgaacact
     2761 tatctggcca tcgaaaacaa tctggaactg atcccggtta tcaacaagat cgatctgccc
     2821 ggcgctgatc ccgagagagc gatcgaagag atcaagcact tcattggcct ggaaactcac
     2881 aacgccatcc ttaccagcgc gaagaccggc gaaggcgtat ccgaagtgtt ggaagcgatt
     2941 gtgcgcgacg ttccatcgcc gaagggtgac gcaagcgccc cgctgaaggc tctgatcttc
     3001 gactcgtggt acgactcgta tcgcggtgtg atcgttttgt ttcgcgtcat cgatggcgtg
     3061 attcgcccgg gcatgaagat tcgttttttc aacgccggac gcgattacca ggtagaaacg
     3121 ttgggggtca atcgtccccg gccggcgccg atcgatgaat tgggtgtcgg tgaagttggg
     3181 tttttgaccg cttcaataaa ggccgtcgcc gacgtgcaaa tcggcgacac cgtcaccgaa
     3241 agtgcgcggc cgacaaaaga accttttccc ggctaccagg agataaaacc catggtgttc
     3301 gccgggcttt atccgataga cacaaaccag tacgaagagt tgcgcgatgc gcttgataag
     3361 ctgcgactga atgatgcgtc gttcttctac gagcccgagt cgtccacggc gctggggttt
     3421 ggttttcgct gcggctttct cggtttgctg cacatggaga tcgtgcagga gcggctcgaa
     3481 cgtgaattca atctcgatct gatcacgacc gcgcccagcg tgcgttacct ggttaccact
     3541 accgacggag acaaagctga aatcgactcg ccggcgaaga tgcccgaggc agtgcgcatc
     3601 acgaagatcg aagagccgat cattcgcgcc accattctga caccggatga atacctcggc
     3661 gggattctgc cgctgctgga agaaaaacgt ggcacccaga aaggcttcga gtacatcacg
     3721 accacccgcg tgatgctgac ttacgaattg ccgctgaatg agatcgtgct cgacttttac
     3781 gatcgtctga aatcagtttc gcgcggctat gcctcgctgg attacaacct tgctggttac
     3841 cgggaaagcg atctcgtcaa gcttgatatt ctggtcgcga gcgagccggt cgatgcgctc
     3901 tcgctgatcc tccatcgcga caccgcgcag gcaaaaggac gcgcgctggc ggaaaaaatg
     3961 aagcagttga tcccgcgcca gcttttcgaa gttccgattc aggcagcgat cggcaacaaa
     4021 gtaatcgcgc gagaaacggt gaaagcgctg ggcaaaaacg tcatcgccaa gtgttacggc
     4081 ggcgacatca cgcgcaaacg caagctgctc gaaaagcaaa aggaaggcaa gaagcgcatg
     4141 aagaaagtcg gccgcgtaga gattccgcag gaagcatttt tggcagtgct gaaggtgaac
     4201 gagtgacagg tgatttcatt cgaactcgcc gtcgtcgtcc ggctcgatca gctcttgcgc
     4261 tattaattca cgccaagtct tcatcacccc ttctgtggca ccgattgatt tcaaggcctc
     4321 acttaccgcg ccctcttcct gcttcaactc tggaaacgtt aagagcaaga gcgccaggtc
     4381 gcgccagtct gttcccgcct ttggttgtcc gcgccgggcg tgataggcga tcaccttatg
     4441 cgcgatgagt tcgggcggag acatcacaag tacatcttcg attcgttcgg cgcgaggcag
     4501 agattcggcc gcacgaaaat caaccagatg gcggttgcgg ggtttctgaa tttgaaacaa
     4561 gcgatatcct ttgccggcgc caatcattcg aacacgaaca gcgatgtgaa aacgctcact
     4621 gagatattcg cgcaactcct cggcgagttc ggtcgcgcgg gtggaaatga gatcaatgtc
     4681 ctggctcatt cgcggctcac caacataagc gttgacggcc tgcgcgccga atacaacggc
     4741 atcttcgcgc ccgcgcaaaa actcaagcac ggcgtcatgg atcgtcgcca gaggcaatgg
     4801 ttcgcgcatg gcaaattcct cgaatgtaag ggctccggcg ttgagcatcg attgaaataa
     4861 tacgccctcg ccgtctctca tccaaagact ttctcctttc gaaggttacc ccgctggcgt
     4921 ttctcgcaga atgaattcat gctaaaaccc tgtggggata tcgaagagtg gctgatcaga
     4981 ttggagacta gtgaaatgaa gaaggttgta attatcgcgt ggctgttact tgtttcgggg
     5041 acaattgtcg ctcagcactc ggacatgcag atgaagacga ccgccgagaa gcccgccaca
     5101 ctaatgtctg gccttggctc gattcatcat ccggtttcca caagtaatac cgaggcgcag
     5161 cgctttttcg atcaaggact gtcattggtt tttgccttca atcacgatga agccattcgt
     5221 tcatttaagc gcgccgccga attagatccg gaaatggcga tggcctggtg gggcattgct
     5281 ctggcgctgg gtccaaacat caatctcgac gtgga
//
LOCUS       DASZZE010000160         2087 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_201294, whole genome shotgun sequence.
ACCESSION   DASZZE010000160 DASZZE010000000
VERSION     DASZZE010000160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2087
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201294"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1245)
                     /locus_tag="VHD88_03230"
     CDS             complement(<1..1245)
                     /locus_tag="VHD88_03230"
                     /inference="COORDINATES: protein motif:HMM:NF014758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HVS20830.1"
                     /translation="MTKNGNNGKLLKVVGKPFRKVDARAKCTGQTKFADDIVLPRMLF
                     CKILRSHKPHANIKSIDVSKALALPGVFAVITGKDLPIPYGILPVSQDEHALCIDKVR
                     FIGDPVAAVAAIDEDVAFDAMNLIEVEYEPLNTISSIEEGVMIDEPRIHEYGDGGNIH
                     KKVSLEFGEVDEGFAEADLIREDTFFYEGNTHLPMEQHAAVAYLDTDEKLTLWSSTQT
                     PHYVHRALTKVLEIPASHIRVIATPNGGAFGGKSDPFNHEVVVCRLSMLTGRPVKCTL
                     TREEVFYCHRGRHPVLMHVKTGVKKDGAITAMHFKSFLDGGAYGSYGVASTFYTGALQ
                     TVTYEVPRYKFQGLRAFTNKPPCGPKRGHGTPQPRYALEVHLDKIAEELRLDPAEMRR
                     AHLVKPNSITANYLRIGSMGLGA"
     gene            complement(1361..1891)
                     /locus_tag="VHD88_03235"
     CDS             complement(1361..1891)
                     /locus_tag="VHD88_03235"
                     /inference="COORDINATES: protein motif:HMM:NF013923.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HVS20831.1"
                     /translation="MQDITKQKAHISFTLNGEAAEVAFAPHKTLLEVLREDLNLTGTK
                     HGCELGECGTCTVLVDGRSILSCLFLGLDAEGREVTTIEGMAEGAELHPLQVTFADLG
                     AAQCGYCSPGFLLVAKELLEKKPKPSLDEIKEALSGNLCRCTGYIKIYEAVELAAARM
                     RGDEMELPRESLYGCE"
BASE COUNT          475 a          599 c          536 g          477 t
ORIGIN      
        1 cgcacccaga cccatgctgc cgatgcgcag atagttggca gtaattgaat ttggcttgac
       61 tagatgcgct ctgcgcatct ctgccggatc cagccgcaac tcctcagcga ttttatcgag
      121 atgaacttcg agcgcgtaac gcggttgtgg tgtgccgtgt ccacgcttag gtccgcatgg
      181 cggtttgttg gtaaaagcgc gcagtccctg gaatttgtaa cgcggcactt catacgtcac
      241 cgtttgcaag gccccggtgt agaaggtgct cgcgactcca taactcccat aggcgccgcc
      301 atcaagaaac gatttgaagt gcatcgcggt gatcgcgccg tctttcttca cgccggtctt
      361 aacatgcatc aacacgggat gccggccgcg atgacaatag aaaacttctt cgcgcgtcag
      421 tgtgcacttc accggacggc cggtaagcat cgatagtctg cagaccacga cttcgtgatt
      481 gaaaggatcg ctcttgccgc caaaagcacc gccattcggc gtagcaatta cacgaatgtg
      541 actcgcggga atctcgagca ccttggtcag ggcgcgatga acgtaatgcg gcgtctgcgt
      601 ggaactccag agggtcagct tctcatcagt gtccaaatag gcaaccgccg catgttgctc
      661 catcggcaga tgcgtattgc cttcgtaaaa gaaagtgtct tcgcgaataa gatcagcttc
      721 cgcaaagcct tcatcaactt cgccgaattc cagagagact ttcttgtgaa tgttgccacc
      781 gtcgccgtat tcgtggatgc gcggctcatc gatcatcaca ccttcttcaa tcgaagagat
      841 ggtattcagc ggctcatact cgacttcgat cagattcatc gcgtcgaagg cgacgtcttc
      901 atcgatcgcc gcaaccgcag ccaccggatc gccgatgaag cgcaccttgt cgatgcacaa
      961 cgcgtgctcg tcctgactga caggcagaat gccgtaggga atcggcaagt ctttgccggt
     1021 aatgacggcg aagactccgg gcaaggccag cgctttcgaa acgtcgatac tcttgatatt
     1081 tgcgtgcggc ttgtggctgc gcaggatctt gcaaaaaagc atgcgcggca gcacgatgtc
     1141 atcggcaaac ttcgtctgcc ccgtgcactt cgcacgcgcg tcaactttgc gaaagggctt
     1201 gccgacgact ttcagcagct ttccgttgtt gccattcttc gtcatggttc aataagccac
     1261 agatgaacac ggatagacac ggattcagaa aagtaaaact tcaaaacgat tggtcgatct
     1321 tatcgtcatc tgtgaaattc gtgtctatct gtggccaatt ctattcgcag ccatagagac
     1381 tctcgcgcgg caattccatt tcatcgcctc gcatgcgcgc cgccgccagc tcgaccgctt
     1441 cgtaaatttt tatgtagcca gtgcaacgac agagatttcc ggacaacgct tccttgattt
     1501 cgtcaagcga aggcttcggt ttcttctcca gcagttcttt cgcaaccaga agaaagccgg
     1561 gcgaacagta tccacactgc gccgcgccga gatcggcaaa ggtaacttgc aaagggtgaa
     1621 gctccgcgcc ttcagccatg ccttcgatcg tcgttacctc gcgaccttcg gcatcaaggc
     1681 caagaaacag acacgacaga atcgatcggc catcgacgag caccgtacac gtgccgcact
     1741 cgccaagttc gcagccgtgc ttcgttccgg tcaaattcag gtcttcgcgc aagacttcca
     1801 gcaacgtttt gtgaggcgcg aaagcaactt ctgcggcctc gccgttgagc gtgaacgaga
     1861 tgtgcgcttt ttgtttggtt atgtcttgca tctcaacttg agatacccgc tcgctaccgc
     1921 tcgcggttct gtaccgcggc cttgcgagaa atcatttcac gtaaaggcgc caagcgcaaa
     1981 gctaaggcgc aaagtgacac cacagtaatg gagacaactc aacgcaagga agatgacgct
     2041 cgcgcgcctg ccgcatcctg cttctttgtc gcaccaagga cgacatt
//
LOCUS       DASZZE010000161         2578 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_53085, whole genome shotgun sequence.
ACCESSION   DASZZE010000161 DASZZE010000000
VERSION     DASZZE010000161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2578)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2578)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2578
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53085"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..745)
                     /locus_tag="VHD88_03240"
     CDS             complement(<1..745)
                     /locus_tag="VHD88_03240"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HVS20832.1"
                     /translation="MDTYRNFIGGKWIESSSSKTVNNVNPANTDDIIGTARQATREEA
                     RAAVEAAAKAFRSWRATPAPARGKIVAKAARLIEEAKEEIAQILTREEGKTVGESRGE
                     VQRSINVAEFCAGESRRMNGETIFSELPSNFVYTIKQPLGVVACVTPWNFPVAIPTWK
                     IAPALVAGNTVVFKPATLTPATAVRIVEIFEQAGVPPGVLNLILGSGSDAGDEIINHP
                     AIKAVSFTGSNAVGIRMYEQVSRRGAKCQC"
     gene            813..2414
                     /locus_tag="VHD88_03245"
     CDS             813..2414
                     /locus_tag="VHD88_03245"
                     /inference="COORDINATES: protein motif:HMM:NF004837.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HVS20833.1"
                     /translation="MIDSGPSGEPTYAPGNIRELLEQRARAAPDKVFLFSETDGRRFT
                     YADFDRAANRAAAMLASRGIGKGDVVSLLMPNSAEYIIAYFACWKLGALAGPINSLLK
                     EHEIAFVLNNSEAKAILVHPDFHERIQSIRSELPYLQSVITFDNEAEATRDFAGSAGV
                     PPADRSECRQDACAPGDEAIIIYTSGTTGKPKGCLLSHGNVIANARQISAWLSFTEKD
                     RLLTIMPLFHMNAVSVTTMSALYAGGSTVISPKFSASQFWKSISDYQVTSFGSVATML
                     SMLLNTYPDGLPKGLKTDQLRFAMCGSAPVPAEVMKKFEETFNCPVIEGYGLSESTCR
                     STFNPPDERRRPGSCGLPIGNEMRVLDDHDHEVADGELGEIVLRGENILKGYYKNPDA
                     TANAFRNGWFHTNDVGYRDKDGFFYIVDRKSDMIIRGGENIYPREIDEVLYQHPAIAA
                     AATIGVPDPLYGEEVAAFVVLKNGAGVGEEELLSFCSERLADYKCPKTIRFVKDIPKG
                     PTGKLLKRELAKQFVNDGKGTAWPG"
BASE COUNT          567 a          716 c          732 g          563 t
ORIGIN      
        1 cgcactgaca cttcgcaccg cggcgagaca cttgttcgta catgcgaatg ccgaccgcat
       61 tcgagccggt gaacgaaacg gctttaatgg ccggatgatt gatgatttcg tcgcccgcat
      121 ccgaacctga tccaagaatc agattcaaaa cgcccggtgg cacgccggcc tgttcaaaga
      181 tttcaacgat gcgtacggcg gtggccggcg tcagcgtggc gggtttgaag accacggtgt
      241 ttccggccac cagcgccggc gcgatcttcc acgtcggaat cgccacggga aaattccacg
      301 gcgtcacgca agcaactacg cccagcggtt gcttgatcgt atagacgaag ttcgatggca
      361 gctcggaaaa aatagtctcg ccattcatcc gccgggattc acctgcgcaa aactcggcga
      421 cattgatcga gcgctgcacc tcgccgcgcg actcgccgac cgtcttgcct tcttcgcgcg
      481 tgagaatttg ggcgatctct tctttcgctt cttctatcaa tcgcgcggct ttcgcgacga
      541 ttttgccgcg cgccggcgcc ggcgttgcgc gccaactgcg aaatgctttg gcggcggctt
      601 cgactgcggc gcgcgcttct tcgcgagtag cttgccgtgc cgtgccgatg atgtcgtcgg
      661 tgttggcggg attgacgttg ttgaccgtct ttgatgagct ggattcaatc catttgccgc
      721 cgatgaagtt gcgataggta tccatgagaa gccggcacag gaaaatcgga attagtgact
      781 ggaacgcggc ctaatatatc atcggacgcg gcatgattga cagcggccct tcaggagaac
      841 caacctacgc gcccgggaat atccgggaac ttctggaaca gcgcgcaaga gcggcccccg
      901 acaaggtatt tctcttttcc gaaactgacg ggcggcggtt tacctatgca gatttcgatc
      961 gcgcagcgaa tcgcgccgcg gcgatgctcg cttcgcgcgg catcggcaaa ggcgacgtgg
     1021 tcagtctgct gatgccgaac agcgctgagt acatcatcgc ttatttcgcg tgttggaagc
     1081 tgggagcgct ggccggaccg atcaattcgc tcttaaaaga gcacgaaatc gctttcgtgc
     1141 tgaacaactc tgaggcaaag gcgattctgg ttcatcccga cttccatgag cgtatccaga
     1201 gtattcgaag cgagcttcct tacctgcaat ctgtcatcac gttcgacaac gaggccgaag
     1261 cgacgcgaga ctttgccggg agcgcaggcg tcccgcctgc tgatcgcagc gaatgcaggc
     1321 aagatgcctg cgctcccggc gatgaggcga tcattatcta cacctcgggc acaacgggaa
     1381 aaccgaaggg ctgtttgctc agtcacggaa atgtcatcgc caatgcccgg cagatcagtg
     1441 cgtggctaag tttcacagag aaggatcgac tgttaacaat catgccgctg tttcacatga
     1501 acgcggtttc ggtgacgacg atgtccgcgt tgtacgccgg aggctcgact gtgattagtc
     1561 cgaagttttc tgcctctcag ttctggaaga gcatttccga ctatcaagtg acatcgtttg
     1621 gatcagtggc gacgatgctc tcgatgcttc ttaacactta tcccgatggg ttgccgaaag
     1681 gattgaagac tgatcagctc cgcttcgcga tgtgcggctc agcgccggtg cccgccgaag
     1741 tgatgaaaaa gtttgaagag actttcaact gtcccgtcat cgaaggctac ggcctttccg
     1801 aatcaacctg tcgctcgacg ttcaatccgc cggatgagcg acgacgtccg ggctcgtgcg
     1861 gtttgccgat cggaaacgaa atgagagttc ttgacgacca cgaccatgaa gtggcggatg
     1921 gcgaactcgg cgaaatcgtt ctgcgcggcg agaacattct gaaaggctac tacaagaatc
     1981 ccgacgcgac cgcgaatgcg tttcgcaatg gctggtttca caccaacgat gttggctatc
     2041 gcgacaaaga tggtttcttc tacatcgtcg atcgcaagag tgacatgatt attcgcggcg
     2101 gcgagaacat ttatccgcgc gagattgacg aagttctcta tcagcatcct gccatagcag
     2161 ccgcagcgac catcggcgtg cccgatccgc tctacggcga agaggtcgcg gctttcgtcg
     2221 tgttgaagaa tggagccggg gtaggcgagg aagagttgct cagcttttgt tcagaacgtc
     2281 tagcggacta taaatgccca aagacgattc gctttgtcaa agacattccc aagggtccga
     2341 ccggcaagtt actcaagcgt gagctggcaa agcagtttgt gaatgacggg aagggaaccg
     2401 cttggcctgg ctgacattca ggctaagcaa ttcattgatt gccttgaagc ggcgttagcg
     2461 atcggcgtgt cggttgcctt agtcgatcaa tcaaccacgc gcccagcaac cacgccgcgc
     2521 acgctccaac cattacgacc gaaaaccatt tgccgtacaa accatctgct gagaactt
//
LOCUS       DASZZE010000162         3195 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_102412, whole genome shotgun sequence.
ACCESSION   DASZZE010000162 DASZZE010000000
VERSION     DASZZE010000162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3195)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3195)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3195
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102412"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..776
                     /gene="sppA"
                     /locus_tag="VHD88_03250"
     CDS             <1..776
                     /gene="sppA"
                     /locus_tag="VHD88_03250"
                     /inference="COORDINATES: protein motif:HMM:TIGR00706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HVS20834.1"
                     /translation="IKAVVLRVDSPGGSGLASDIIWRAIESLKEKKPVVVSMSDVAAS
                     GGYYIACNANKIVAEPSTITGSIGVVGGKPVVKGLYDWLGITNEYVMRGKNAGMFRET
                     EKFNDSERKKFEEFLNTTYDDFTTKVGKGRGKSKDDIDKIGQGRVWTGQQGKERGLVD
                     EYGGLDKAIEIAKQLAKIPAEKSVQRVPLPQPPTFFEQLTSAGGDDETKAGAELKQQQ
                     LILAALPEDARHAFLYMQLLDRAKNGDVLYLLPFDLRIR"
     gene            944..2215
                     /locus_tag="VHD88_03255"
     CDS             944..2215
                     /locus_tag="VHD88_03255"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HVS20835.1"
                     /translation="MRRRKATAGPGLSVIFMSVLFLTASLPLRAQTPQPTPALAPASD
                     GLTFEQIYDLAEHNNLQVNTVRRRRAVAEAAILIAGERPNPNFISPYTRSEPRWQPSV
                     SQLIELGGKRGRRIDVARNELHLTELDLDAALRTLRHDVRAAYFNISLARNTVALGQQ
                     AFDQAKQLADIARERFEAGDVAQFEVLQANLAVDRATNDLLRLENAEQIARATMNQLL
                     NRAPDAPLDLRDTLFVRTPPISTSDLIGRSLSQNVELRTAEQQITTEQSRLRLAQAQR
                     VPDLMLEPGIETFDSSHPNPGFKMQVTVPLPIFNRGRAEIRRSSAMLEQLQAERDATR
                     HRVSSDIGRAALNLESARKQVEFYETKLLPEAERVRQLANEAYRIGQTNLLSVIDATR
                     NAREVRQAYLQALFDYQSALADLEQAAGVKF"
     gene            2311..>3195
                     /locus_tag="VHD88_03260"
     CDS             2311..>3195
                     /locus_tag="VHD88_03260"
                     /inference="COORDINATES: protein motif:HMM:NF024829.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-binding protein"
                     /protein_id="HVS20836.1"
                     /translation="MPIAIALGLIILLVVVAWFIARRGSAEQEVEPIVEVEVAPSARV
                     EMREYVEAGGTLNALPGHEASFSSASAGRATRVLVQVGQHVHAGQTLAELDRSVLAAQ
                     VRQAQAALQQARATAAQARTVSGTQSQTIASDQIKQAEAALGTARANETLAQSNLSRQ
                     RRLFERGIAPRKDVDDAETQAKVTAGAARQAESALTAARVNAARGVGEARTQAGVTAG
                     GVEAAQAALDVARAEFARAAIRSPIVGTVTKRTINDGESVDPAIPAFEVIDSASLDLV
                     ANVPAGYLDRIKTGDIAVV"
BASE COUNT          688 a          920 c          998 g          589 t
ORIGIN      
        1 gcattaaggc cgtggtgctg cgcgttgaca gtccgggcgg atccggtttg gcctcggaca
       61 ttatctggcg cgccatcgag tcgctgaaag agaaaaaacc cgtcgtcgtt tccatgagcg
      121 acgtggctgc ttccggcggg tactacatcg cctgcaacgc aaacaagatc gtggctgagc
      181 cttcgacgat caccggatcg attggcgtag tcggcggcaa gccggtcgtg aaaggtttgt
      241 acgactggct gggcatcacc aacgagtacg tgatgcgcgg caagaacgcc ggcatgtttc
      301 gcgagacgga aaagttcaac gactctgagc gcaagaagtt cgaagagttt ttgaacacga
      361 cgtacgatga cttcacgaca aaggttggca aaggtcgcgg caaatccaaa gacgatatcg
      421 ataaaatcgg tcagggtcgc gtgtggaccg gacagcaggg aaaagagcgc gggctggttg
      481 acgaatatgg cgggctcgat aaggcgatcg agatcgcgaa gcaactcgcg aagattcctg
      541 cggaaaaaag tgtgcagaga gtgccgctgc cgcaaccgcc aactttcttt gagcaactga
      601 ccagcgccgg tggtgacgat gaaaccaaag ccggcgccga attgaagcag cagcaattga
      661 ttctcgccgc gttgccggaa gacgcgcggc acgctttcct ctatatgcaa ctactcgatc
      721 gcgcgaagaa cggcgacgtg ctgtacctgc tgccgtttga tctccggatc agatagcgaa
      781 agtggcacag gctttagcct gtgattcctt tcgggatcac agagtgaggt ctgtgccaca
      841 gatccaacct tcgtcattaa cctagtgtta aggtattatc cctccgtttc cccttggtag
      901 gaaaaaagtc caagacgaag cgcgaacttt ctgaattgat ctcatgaggc gaaggaaagc
      961 gacagcgggc ccgggcctgt ccgtcatttt catgtccgtg ctgtttctca ccgcgagctt
     1021 acctctgcgt gcgcaaactc cgcagcccac gccggcatta gcgccagcga gcgacggact
     1081 caccttcgaa cagatttacg atctggccga gcacaacaac ctgcaagtga atacggtgcg
     1141 ccggagacgc gccgtggctg aggccgcaat cctgattgcc ggcgagcggc cgaacccgaa
     1201 tttcatttcc ccgtacacgc gttccgaacc gcgctggcaa ccctcggtgt cgcagttgat
     1261 cgagttgggc ggaaagcgcg ggcgccggat cgatgtagcg cgaaacgaac tgcatttgac
     1321 tgagttggat ctggatgccg ctctgcgcac cttgcggcac gacgtgcgcg cggcgtactt
     1381 caatatatcg ctggcccgca acacggtggc gctgggacag caggcgttcg atcaggcgaa
     1441 gcaattggcg gacatcgcgc gcgaacgttt cgaagccggc gacgttgccc aattcgaagt
     1501 gctgcaagcg aatctcgcgg tcgatcgtgc aaccaacgac ctcttgcgtt tggagaatgc
     1561 cgaacagatt gcccgcgcga caatgaatca gttgctcaac cgcgcacccg acgcgcctct
     1621 cgatctgcgc gacactctgt tcgtcaggac accgcccatc tcgacgtctg atctaatcgg
     1681 caggtcgctc agtcagaacg tcgagttgcg caccgccgag caacaaatta cgactgagca
     1741 gagccgcttg cgactggcgc aagcgcagcg tgtgcccgat ctcatgctgg aaccgggcat
     1801 cgaaaccttc gattcttctc accccaaccc cggattcaag atgcaggtta cagtgccgct
     1861 gccgatcttc aatcgcgggc gcgccgagat tagaagaagc agcgcgatgt tggaacagct
     1921 tcaggccgaa cgcgacgcga cgcgccatcg cgtctcttcg gacattggcc gcgcggccct
     1981 caatctggaa tcggcgcgca agcaagtcga gttttacgaa acgaagctgc tgcccgaagc
     2041 cgagcgcgtg cggcagttgg ccaacgaagc ttatcgtatc ggtcagacca acttgctttc
     2101 ggtaatcgac gccacgcgca atgcgcgcga agtgcggcag gcgtatttgc aagcgctctt
     2161 cgactaccag tcggcgctgg ccgatctgga acaggccgcc ggggtgaaat tttgatagac
     2221 gacgaaaaca aagtgagaga cgtaaacaat tcagcgccga gctttggcga tagcgcccga
     2281 tcgacacgcg gttcgcgttg gctagcaccg ttgccgatcg cgatcgcact tggtctgatc
     2341 attctgctgg tcgttgtcgc gtggttcatc gcgcgtcgcg gttcggctga gcaggaagtc
     2401 gagccgattg tcgaagtcga ggtcgcgccg agcgcacgcg ttgagatgcg cgagtacgtc
     2461 gaagccggcg gcacgctcaa cgcgcttccc ggccacgaag cgagtttcag ttccgcctca
     2521 gcggggcgtg cgacgcgcgt gctggtgcaa gtcggtcaac acgttcacgc cgggcagacg
     2581 ctggctgaat tggatcgcag cgtgctggcc gcgcaagtgc gtcaggcgca agcggcgttg
     2641 cagcaggcgc gggccacggc ggcgcaagcg cgaacagtct ctggcacgca gagccaaacg
     2701 atcgcttctg atcaaatcaa acaggcggaa gccgcgctcg ggacggcgcg agcaaacgaa
     2761 acgctggcgc aaagcaatct gtcgcggcaa cgacgactgt tcgaacgcgg catcgcgccg
     2821 cgtaaagacg tcgatgacgc ggagacgcaa gcgaaagtaa ccgccggagc cgcgcgccag
     2881 gctgaatctg ctttgactgc ggcgcgcgtc aacgcagcgc gcggcgttgg cgaggcacgt
     2941 acccaagcag gggtcactgc aggcggcgtt gaagcggcgc aggcggcgtt ggacgtggcg
     3001 cgcgctgaat ttgcgcgtgc tgcgattcgc tcgcccatcg tcggcactgt gacgaagcgc
     3061 acgatcaatg acggcgagag cgtggatccg gcgattcccg cgtttgaagt gatcgattcc
     3121 gcttcactcg atctggttgc gaatgtgccg gcggggtatc tcgaccgtat caagacgggc
     3181 gacatcgctg tggta
//
LOCUS       DASZZE010000163         4287 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_118829, whole genome shotgun sequence.
ACCESSION   DASZZE010000163 DASZZE010000000
VERSION     DASZZE010000163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4287)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4287)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4287
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_118829"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(179..1174)
                     /locus_tag="VHD88_03265"
     CDS             complement(179..1174)
                     /locus_tag="VHD88_03265"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HVS20837.1"
                     /translation="MSNLRKALITGLTGQDGSYLAEHLLSEGYEVHGLVRRVALEDPT
                     RRFGRIHHLLDRITLHAASLESYPTIFNLFSRHEFDECYHLAAQSFVAESFADGFSTM
                     NVNINGTHCMLAALRELQPRCRFYFAGSSEMFGNAKETPQLETTPFYPRSPYGISKVA
                     GFQLTRNYREAYGMFCVNGILFNHESPRRGFEFVTRKVTSTVARIKVGLADELRLGNL
                     DTRRDWGHAADYVRAMHLMMQQAEPDEYVVASGASHSVRELCELAFREVDLDWRDYVK
                     ADERFYRPAEVHQLIGDATKAKQVLGWQARYTFEHLVKQMVQSDLDALNRSEEKP"
     gene            1316..2350
                     /gene="rfbB"
                     /locus_tag="VHD88_03270"
     CDS             1316..2350
                     /gene="rfbB"
                     /locus_tag="VHD88_03270"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: protein motif:HMM:TIGR01181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008460 - dTDP-glucose 4,6-dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HVS20838.1"
                     /translation="MGSTRRFLVTGGAGFIGSAFVRLLLDEIPSCSVANLDALTYAGN
                     LDNLKGLDEKRHVFVHGDITTHEAVRNSLEPDTEAIINFAAESHVDKSIASADEFIRT
                     NVMGTQVLLDCARERGVRRFVQVSTDEVMGSLPEDKSAFFNEDSPFLPNSPYAASKAA
                     AEHLVRAAHHTFGLDTVITRCGNNYGPRQFPEKFLPLMLANALNDEPIPVYGDGLHVR
                     DWIYVDDHCRAILLALEKGRSGATYNIGARNQRRNIDVAKSVLDALGKPHSLLRFVKD
                     RPGHDLRYAIDSSLIEAELGWAPRETWESGLHKTIDWYKNNAEWVERARSGAYREFYA
                     QQYGMEVSAQ"
     gene            2347..3231
                     /gene="rfbD"
                     /locus_tag="VHD88_03275"
     CDS             2347..3231
                     /gene="rfbD"
                     /locus_tag="VHD88_03275"
                     /EC_number="1.1.1.133"
                     /inference="COORDINATES: protein motif:HMM:TIGR01214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008831 - dTDP-4-dehydrorhamnose reductase
                     activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose reductase"
                     /protein_id="HVS20839.1"
                     /translation="MKVLVSGANGLVGRAMTAHCMSEGSRVIALDHVSLDITDEPGVN
                     ATIDRVRPDVVINCAAWTNVDGCELDPKRAQKANARGPELLALACRRIDALLITISTD
                     YVFDGRKDGFYTQRDQPNPQSCYARSKLDGEHCAQQGWARTIVVRSGYIFGPGGTNFL
                     STVVRRALRGERLRAINDSFGTPTYARDLAQQLYRLAQLDLPGIYHVVNSGEGASFES
                     FARAAIKAAGLADTLVESISLEGLNRPAPRPRNSRLRCLLSEAVGLEPLPLLQDSLRD
                     FVAAESPAKAADILRRSV"
     gene            3323..>4287
                     /locus_tag="VHD88_03280"
     CDS             3323..>4287
                     /locus_tag="VHD88_03280"
                     /inference="COORDINATES: protein motif:HMM:NF014732.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Wzz/FepE/Etk N-terminal domain-containing
                     protein"
                     /protein_id="HVS20840.1"
                     /translation="MAHDERLVPARAGRDLDSSLADLTKSRPYGKYGRYGVQPAEANL
                     REYLFVVLKRKWLIMSIVLVITSLVTIQAYREPSTYEGKTTIQIQQKPPNVLTSGQLV
                     INAQPDPNFWGTQLKLLQNPALARQVVLTLDLQNNPAFLGGQARSGIFDSLRRIFSRE
                     KPVTATSPANRSGTEALGEGELKDRQFTPEELARLEPYEDAIAANESVEPSAGTDLVT
                     IHYIHTDPELAQKIANTLADVFVQNNVERISSGTSKAEMQLSSEIAKTQAKIHDEEQA
                     RFAFAKEKSLPLDNAPGSNLEQVRLQGYSAQLMAAENERRNLTAV"
BASE COUNT          954 a         1181 c         1211 g          941 t
ORIGIN      
        1 tcaaactcgg gaatttgtac ttgtttgacg aggctcgcac gatcttgatc agatgtgtaa
       61 tcgacggtcg cctagtctag cagcggcggt gtttgcacac aaccacaacg cggccgggga
      121 aggccatcac ggcgtcgtga agtgaaagcg ccgaagagag caaagtatgc gggtctgttc
      181 aaggtttctc ttcagaccgg ttaagcgcgt ccagatcgct ctgcaccatc tgtttcacca
      241 ggtgttcgaa tgtatatcgt gcctgccagc cgagaacttg tttggctttg gtcgcatcgc
      301 cgattagttg gtgcacctcc gctggccgat agaatctctc gtcggctttc acgtagtctc
      361 gccaatcgag atcgacttcc ctaaaagcga gttcgcatag ttcacgcacc gaatgtgaag
      421 cgccgctagc cacaacgtat tcgtcgggct ctgcctgttg catcatcaag tgcatggcgc
      481 gaacataatc agccgcatgg ccccagtcac gccgagtatc caggttaccg aggcgcagtt
      541 catcagcgag gccgaccttg attctcgcca cagtgctggt gaccttgcgc gttacaaact
      601 caaagccgcg ccgcgggctt tcgtggttga aaagaattcc gttgacgcaa aacattccgt
      661 acgcttcacg ataattcctg gttaattgaa aaccggcaac cttgcttatt ccgtaagggc
      721 tgcgcggata gaacggtgtg gtttcaagct gtggcgtttc tttggcattg ccgaacatct
      781 cgctcgagcc ggcgaaataa aaacggcagc gcggttgcaa ctcacgcaac gcagccagca
      841 tgcagtgcgt gccgttgatg ttgacgttca tcgtcgagaa accatcggcg aagctctccg
      901 cgacgaagct ctgcgccgcg aggtggtagc attcgtcaaa ttcatgccgg ctgaatagat
      961 tgaagatggt ggggtagctt tcaagacttg ctgcatgcag cgtgattcga tcgagcaggt
     1021 ggtggatccg accaaaccgc cgtgtcggat cttcgagagc gacgcgtcga accagcccgt
     1081 gaacttcgta tccctcgctc agaagatgtt ccgccagata gctcccgtcc tggccagtta
     1141 atcccgtaat gagagctttt cggaggtttg acattgaagt atgctgccgt ccgccataat
     1201 attacttgct ccgtttcacg gcaaacccgt gatcgtctta tgcgattgac tttgccgcgc
     1261 ttaatcacgc cctgactgcg agccaagggt tccgcggtcg ccgcggaaga tcgttatggg
     1321 atcaacacgc agattcctcg ttacaggtgg ggccgggttt attggctctg cctttgtgcg
     1381 tctccttctt gatgagattc cgtcctgctc agttgcgaat ctcgatgctc tcacctacgc
     1441 gggcaacctt gataacctaa agggtctcga cgaaaaacgc cacgtattcg ttcacggaga
     1501 tataacaacc cacgaagccg tgcgaaactc acttgagccg gacacggagg cgataatcaa
     1561 cttcgccgca gagtcgcatg tagataaaag catcgcctcg gcggatgagt ttattcgcac
     1621 taacgtgatg gggacgcagg tgctgctgga ctgcgcgcga gagcgaggtg tgcgacgctt
     1681 tgtgcaggtt tcaactgacg aagtgatggg aagtttgccc gaagacaaaa gcgcgttctt
     1741 taatgaggac tcgccgtttc ttcccaacag tccttacgcc gcatcaaagg ccgccgccga
     1801 acatctagtg cgcgcggcgc atcacacctt cgggctagac actgtgatca cgcgctgcgg
     1861 caacaactac gggccgcgcc agtttcccga gaaatttctc ccgctgatgc tcgcgaacgc
     1921 gctcaacgat gaaccaattc cggtttacgg cgacggtttg cacgtgcgcg attggattta
     1981 tgtggacgat cattgtcgag cgattttgct ggcgcttgag aaaggccgtt ccggagcgac
     2041 ctataacatc ggcgcgcgca accagcgccg caacattgac gtggcaaagt ccgttctcga
     2101 cgcgctcgga aagccgcatt cgcttttgcg cttcgtgaaa gatcgtcccg gccacgatct
     2161 gcgctatgca atcgattctt cgctgatcga agcggaactc ggctgggccc cgcgtgaaac
     2221 ctgggaaagc ggtttgcaca agacgatcga ttggtacaag aacaacgcgg agtgggtcga
     2281 gcgcgcgcgc agcggcgctt atcgcgaatt ctacgctcag caatatggga tggaggtcag
     2341 cgcgcagtga aagttttggt ctctggcgcg aatggtttgg ttggacgtgc aatgactgcg
     2401 cactgcatgt ccgaaggctc acgggtgatt gcgttagatc atgtgtcgct cgacatcacg
     2461 gacgagccgg gagtaaatgc aactatcgat cgcgtccggc cagacgtcgt aatcaattgc
     2521 gcggcgtgga ctaatgttga cggctgtgag ctcgatccca aacgcgctca gaaagcgaat
     2581 gcgcgcggac ctgaattgct ggcgctcgct tgtcgtcgga tcgatgctct gctgatcacg
     2641 atctctactg actatgtatt cgacggccgg aaggatggct tttacactca gcgtgatcag
     2701 ccgaatccgc agagctgtta cgcccgttcc aaactcgacg gtgagcattg cgcacagcaa
     2761 gggtgggcac gcacgatcgt ggttcgcagc ggatacatct ttggccctgg aggaacaaac
     2821 tttctgagca ctgtcgttcg gcgcgcgctc cgaggcgagc ggctccgtgc gattaacgat
     2881 tcgttcggca cgcccacata cgcgcgcgat ctcgcgcagc aactgtatcg attggcgcaa
     2941 cttgatcttc ccggaattta tcacgtagtg aacagtggcg aaggcgccag ctttgaaagc
     3001 tttgcccggg ccgctatcaa agccgccgga ctggccgaca cgctggtcga aagcatcagt
     3061 cttgaggggc tcaatcggcc agctccgcgc ccacgcaatt cgcgtttgcg ttgtctgctt
     3121 tcggaagccg taggcctcga acctttgcct cttcttcagg attcattgcg cgacttcgtg
     3181 gccgcggaat cgcctgcgaa agctgccgat attcttcgcc gctccgtttg acttgcctcg
     3241 ccgcgtgcgt ctgttattat ggagaatccg cgcggtgtcc gaaacgaaga agaatacgat
     3301 tagagaaaca aggctttaag atatggctca cgatgaacga ttggttccgg cgcgcgccgg
     3361 ccgcgatttg gacagcagtc tggccgatct aactaagagc aggccatacg gtaagtacgg
     3421 acgctatggc gtgcagccgg ctgaagccaa tttgcgcgaa tacctcttcg tagttctaaa
     3481 gcgcaagtgg ctgatcatga gtatcgtgct cgtaatcacg tcgctggtga cgattcaggc
     3541 gtaccgagag ccttcgacct acgaaggcaa gactacgatt cagatccaac agaaaccacc
     3601 gaacgtccta acgtcaggcc agctcgtgat taatgcgcag ccggatccga acttttgggg
     3661 tacgcaactg aaactgctac agaatccagc gctggcgcgc caggtggttc taacgctcga
     3721 tctgcaaaac aatccggcat ttctcggcgg tcaggcgcgc agtggcatct tcgattcgtt
     3781 aaggcgaatc ttctcgcgcg agaaacctgt aaccgctacg tctccggcga acagatccgg
     3841 cactgaagca ctcggcgaag gcgaactaaa ggatcgccag tttacgccag aggaattggc
     3901 gcggcttgaa ccctatgaag atgcaatcgc cgccaatgaa tctgtggaac caagtgccgg
     3961 gactgatctg gtgacgattc attatatcca caccgatcct gaactggcgc agaagattgc
     4021 caacacactc gccgacgtct tcgtccagaa taacgttgag cgtatatcga gcggtacgag
     4081 caaagccgag atgcagctca gcagcgagat cgccaagacc caggccaaga ttcatgacga
     4141 agaacaagcg cgctttgcct ttgccaagga gaaaagcctg ccgctcgata atgccccggg
     4201 aagcaatctg gagcaggtgc gtttgcaggg ttacagcgcg cagctcatgg ccgcggaaaa
     4261 tgaacgccgc aaccttacgg cggttta
//
LOCUS       DASZZE010000164         3752 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_167686, whole genome shotgun sequence.
ACCESSION   DASZZE010000164 DASZZE010000000
VERSION     DASZZE010000164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3752)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3752)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3752
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_167686"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1219
                     /locus_tag="VHD88_03285"
     CDS             <1..1219
                     /locus_tag="VHD88_03285"
                     /inference="COORDINATES: protein motif:HMM:NF024970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HVS20841.1"
                     /translation="DNGSESVVIGTNRGIARYEPGRAIPTLYATRIISKRIHQPEELR
                     TGLQLDYPQNSLLLDVTATSSRTFPEQFLYAFALYDAAGHAIKQKLSHDAQFSMEGLK
                     SGKYKVVARAFTKDLVASNSLSFEFNVARAPFPWTSTALAVLLLLALIALGWGYFQNR
                     RIHRTSAELASANRELAAARLQLANETETERRRIARDLHDQTLADLRNLALLVDQLPA
                     SGERGVSLNRAPSAPSALRSEIESISQEVRRICEDLSPSALENVGLSAALQFALAHAV
                     EHAAPDSRFNYEFVCDDALDEKLNLPPNQQIQIYRIAQEALSNICRHAHANHVKMGAK
                     VTGADVFELAIEDDGRGFDASDAKKSAGRGVANIRARASMIDAEVEWAKRDGGGTVFT
                     LHKKKGAGASPPS"
     gene            1329..1607
                     /locus_tag="VHD88_03290"
     CDS             1329..1607
                     /locus_tag="VHD88_03290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20842.1"
                     /translation="MNKRSVFHILPGITSLLITGQFWMMYFTFCRFNVISPFNEFVHR
                     YPYAGGGLIILMVVAILAGGVAALSYKAWLLTSLLALGTLFFIFSQIT"
     gene            1679..2572
                     /locus_tag="VHD88_03295"
     CDS             1679..2572
                     /locus_tag="VHD88_03295"
                     /inference="COORDINATES: protein motif:HMM:NF016142.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine-5'-phosphate glycosidase"
                     /protein_id="HVS20843.1"
                     /translation="MKKLRFTPEIESALAANRAVVALESTVIAHGLPRPQNLETAQRV
                     EQIVREQGATPATIAVLDGKLCVGLNQQQIEQVANRDAIKKLSTRDLAVAVARRWDGA
                     TTVASTLWIAHRACVNVFATGGIGGMHRGSLRDVSADLPELARTPMIVVCSGAKIVLD
                     LPATREWLETYGITVVGYGCDEMPAFYSGRSGLAVDARCDSPEEVVQLFRMQRELGVE
                     SALLVTVPVPVEAEVPQETLNKILDRSLADAEDSNITGRELTPFILARMAERSEGVTL
                     RANIALLENNARVAAQIALAL"
     gene            complement(2656..3087)
                     /locus_tag="VHD88_03300"
     CDS             complement(2656..3087)
                     /locus_tag="VHD88_03300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20844.1"
                     /translation="MKTCKAVSGLMVLAAIGLIGASESFAQSVAGNPSPPQSDAAAIR
                     QRKSSVEEATQNAPTSFTVIREVAPTPRRIFVRSHSLLVRGAVVEDKLLKRREFQQLG
                     FVITREAAEADLILELRHDLLRCMCSPSLTQRPRSCSTAAN"
     gene            complement(3566..>3752)
                     /locus_tag="VHD88_03305"
     CDS             complement(3566..>3752)
                     /locus_tag="VHD88_03305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0008171 - O-methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HVS20845.1"
                     /translation="VVPPGSEMHFSKFMDLNMLVMTGGRERTEAEFCALYERAGFLLT
                     RIVPTESPFSVIEGVRV"
BASE COUNT          798 a         1047 c         1075 g          832 t
ORIGIN      
        1 ggacaacggc agtgaaagcg tcgtcatcgg caccaatcgc gggattgcgc gctacgaacc
       61 tggccgggcg attccgacgc tttacgcgac tcgcattatc agcaagcgca ttcaccaacc
      121 cgaagagttg cgcacgggtc tgcaactcga ctatccgcag aacagtctgc tgctcgacgt
      181 gacggcgacc agcagtcgaa cctttccgga acaattcttg tacgcgttcg cgctttacga
      241 tgcggccggc catgcgatca aacagaagct ttcgcacgac gcacagtttt cgatggaagg
      301 attgaagtcc ggcaagtaca aggtcgtcgc tcgcgcgttt acgaaagatc tggtcgcttc
      361 aaattcgctg tcgtttgagt tcaacgtggc ccgcgcgccg tttccgtgga catcaaccgc
      421 gctcgcggtt ctgttgctgc tggcgctgat cgccctgggc tggggctact tccagaaccg
      481 gcggattcat cgaaccagcg cggagctggc ttcggcgaac cgcgaacttg ccgctgcgcg
      541 tttgcaactc gcgaatgaaa ccgaaaccga acgccgccgg atcgcgcgcg atttgcacga
      601 tcagacgctg gccgacttgc gcaacctggc gttgctggtc gatcagcttc cggcgagtgg
      661 cgagcgcggt gtgtctctga atcgcgcgcc ttcggcgccg agcgcgctgc gttcagaaat
      721 tgaatcgata tcgcaggaag tccgccgtat ctgcgaagat ctgagcccgt cggcgctgga
      781 aaacgtggga ctgtctgcgg ctctgcagtt tgcgctggcc cacgcggtcg aacatgccgc
      841 gcctgatagc aggttcaatt acgaattcgt ctgtgatgac gcgctggatg aaaaactaaa
      901 ccttccgccc aaccagcaga ttcagatcta tcgcatcgcg caggaagcgt tgagcaatat
      961 ctgccgccat gcccacgcaa atcacgttaa gatgggcgcg aaggttactg gcgccgatgt
     1021 gtttgaatta gcgattgaag atgacgggcg cggttttgac gcaagcgacg cgaagaagag
     1081 tgccggccgt ggcgttgcca acatccgcgc gcgggccagc atgatcgatg ctgaggttga
     1141 gtgggccaag cgcgatggtg gcggaacggt ctttaccttg cataagaaaa aaggagcggg
     1201 ggcgagccca ccttcctaac ctgagagatg ttcagcgttg cgtggtgatc tccgaacttg
     1261 agaggtctcc cccgatgaaa cagatcaagt tgttaggcgc cttgttaccc aagggagtag
     1321 acacctagat gaataagaga tccgtcttcc acattcttcc cggtattact agcttgctaa
     1381 taaccgggca gttctggatg atgtacttca ctttctgtcg ctttaacgtt atatctcctt
     1441 ttaatgaatt cgttcatcgg tatccctatg cgggcggagg attaatcatc ctgatggttg
     1501 tggccatctt agctgggggc gttgccgcgc tctcctacaa agcgtggtta ttgacctcac
     1561 ttcttgcgct ggggacgctt ttctttattt tttcccaaat tacataatca agttgccatg
     1621 cttgcttacc ggcgcccaac aactcgctct tgtggataat ctcgagcaag tttgaataat
     1681 gaaaaaactt agattcactc ctgaaattga atcggcgctc gcggcgaatc gagctgtcgt
     1741 ggccctcgaa tcaacggtga tcgcgcacgg cctgccgcgg cctcagaacc ttgaaactgc
     1801 gcaacgcgta gaacagatcg tacgcgagca gggcgcaacg ccggcaacta tcgcggtgct
     1861 cgatggcaag ctttgtgtcg gactgaatca gcaacagatc gagcaggtcg ccaatcggga
     1921 cgccattaag aaactcagca cacgcgatct tgcagtcgcc gtcgcgcgcc gttgggatgg
     1981 agccaccaca gtggcatcaa cgttgtggat tgcgcatcgc gcgtgcgtaa acgttttcgc
     2041 gacgggcggc attggcggta tgcatcgcgg ctcgcttcgg gatgtctcgg ccgacttgcc
     2101 ggaacttgcg cgaacgccga tgatcgtcgt ttgttctggc gctaagatcg ttctggattt
     2161 gccggcgacg cgcgaatggt tggaaacgta cggcatcacg gtggtcggtt acggctgcga
     2221 cgaaatgccg gctttctatt ccggtcgcag cggtcttgcg gtcgatgcgc gctgcgactc
     2281 gcccgaagaa gttgtgcaac tgttcagaat gcaacgtgaa ttgggcgtcg agagcgcttt
     2341 gctcgttact gtcccggttc ctgttgaagc ggaagtcccg caggaaacgc tgaataagat
     2401 tctcgaccga tctctggccg acgcggaaga ttcgaacatc accgggcgcg aactcacgcc
     2461 gtttattctc gcgcgcatgg ctgaacgaag tgagggcgtg acgcttcgtg caaacatcgc
     2521 gctgctcgaa aacaacgcgc gtgtggcggc gcagatcgcc ttggccttgt aatcgaattc
     2581 atggcccggc tgcgcgcatc atgtctttca caaatcgctt cgcaactttt cccgccaccg
     2641 tgccgccgag tgaactcagt ttgccgctgt cgagcacgat ctgggtcttt gcgtcaacga
     2701 cggtgaacac atacatcgta aaagatcgtg ccgcagctcc aggatcaggt cggcctcagc
     2761 cgcttcgcgt gtgatcacaa acccgagttg ctgaaattcg cgccgcttga gcaacttgtc
     2821 ctcgacgact gcgccccgca ccagaagcga gtgtgaacgc acaaaaatgc gtcgcggtgt
     2881 cggcgcgact tctcggatga ccgtgaaaga ggtcggcgcg ttctgcgtcg cctcttccac
     2941 cgacgatttg cgttgccgaa tggcggcggc atcgctttgc ggcggtgaag gattgcccgc
     3001 tacgctttgc gcgaagcttt cgcttgcacc gatcagtcca attgcagcca acaccatgag
     3061 ccccgataca gctttgcatg ttttcataac aacctctttc gaaagtcaaa gcaattcctg
     3121 ctggactgga ttatgggatt ccggacgcca aagcgcggca gactgtatga cactttgccg
     3181 atcgtcacat cgtgccaggc atagtcgcct cgcatttgcc ctgtgtgcta agctatcacg
     3241 cgttattcag tgcagatagt ttcccaggag ggaattaatg gccgaagaaa atcaatgcaa
     3301 gaatccggtg tgcacatgtc caccgcagcc ggacgacaag tactgcagtg cttcatgcga
     3361 aggcacgggc gacacgatcg aactcgactg cgattgcggg cacgatgcgt gtcagggaaa
     3421 tttctgagtt agcttttgga gtgcgccgac tgctacggcg ctttggatct actcacatct
     3481 cgggatccct aggaccagca atccaaagcg gcgtcgcgct gcggcagctt gcagccgcac
     3541 tatctcggta actcataatg gaagcctaaa cgcgaacgcc ttcgatcacg ctaaatggtg
     3601 attcagtcgg tacgatgcgc gtcaggagaa agccagcccg ttcgtagaga gcgcagaatt
     3661 ccgcttcagt acgttcgcgc ccgccagtca tcacgagcat gttaagatcc atgaacttgc
     3721 tgaagtgcat ttcgctgcct ggaggaacga cg
//
LOCUS       DASZZE010000165         3782 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_21811, whole genome shotgun sequence.
ACCESSION   DASZZE010000165 DASZZE010000000
VERSION     DASZZE010000165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3782)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3782)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3782
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21811"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1126)
                     /locus_tag="VHD88_03310"
     CDS             complement(<1..1126)
                     /locus_tag="VHD88_03310"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HVS20846.1"
                     /translation="MNSKLETPNSKLSNGQLVRGLGLTAAISVNVANIIGTGVFIKAR
                     VMTCNVSSPWTALSVWVVAGLLSLAGALTYAELLAMMPEAAGEYGIMRKAYGPASGFI
                     YGWTQFVIARTASAAALAVGFAIFLNDLMRGALKPIYFTIHLPHGFEISFGRLQLVAL
                     GAIAITTLINCAAVKVSGVFATVLTSLKVLLVIGVGAGAFIYAGGHWSNLSLSNIGGT
                     CEGVAVTGGGLAGFGAAMLGALWAYDGWNNITFMAGEVKRPERNLPLGLIGSMLIVIT
                     LYLFVNFGYYHALTPTQIASVPASSSVAAEVVKKFLGPAAVSLMAMGLMISSFGALQA
                     SMLATARVPYALSRDRLFFQSLARVSPRTHVPVRSLIVQGF"
     gene            complement(1146..2606)
                     /gene="lysA"
                     /locus_tag="VHD88_03315"
     CDS             complement(1146..2606)
                     /gene="lysA"
                     /locus_tag="VHD88_03315"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: protein motif:HMM:TIGR01048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008836 - diaminopimelate decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HVS20847.1"
                     /translation="MTKPTASATAHVIAAPAWSIPCFLEARDNNHLFISGVDATALSY
                     KYDTPLFVFSESRIRENIARLQAAAKQVDRPIKFCYASKANSNMSVLKVVRDAGIDIE
                     VNSGGELYKALRVGFRPDQIIFNGTSKTNEELDEAVRAGIYSINVDSIYEIELVEDAV
                     RRARAELNAGLPPARIALRLVPEIGTRSHLGLQTALLTSKFGISSSEVLDAFRRGLRN
                     PDLIHVCGIHIHVGSQTPDVEPFAEAFKSMWNHLMTIHRETGQTLEDINLGGGIPVNY
                     LRDASQADQLPEHEREMLGADLEPAIVLSEALRVARESARDAEAEHLLDRVTILLEPG
                     RSIIADAGVVLTTVRNIKRRPETGDVWLLTDAGYNILLSMNNYKWYYHLISASRAGEP
                     LEAEYKVAGPLCDSGDVYFDIERHGRLPDYRLLPRDVQPGEVLALLNSGAYSLAQMFP
                     YNGRPLPPAVMVRDGGKADLIRKRDTYEDLIANDVW"
     gene            complement(2603..2926)
                     /locus_tag="VHD88_03320"
     CDS             complement(2603..2926)
                     /locus_tag="VHD88_03320"
                     /inference="COORDINATES: protein motif:HMM:NF017020.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEPN domain-containing protein"
                     /protein_id="HVS20848.1"
                     /translation="MNERPTPDSPEAWLLRARSDLALARAVLNLPDVLREDACFHAQQ
                     CAEKSLKALLVHLAIPYQRTHALETLIDLMKASGVDVPPEVDQSFSSLEMAATVLALG
                     GGAAS"
     gene            complement(2904..3236)
                     /locus_tag="VHD88_03325"
     CDS             complement(2904..3236)
                     /locus_tag="VHD88_03325"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: protein motif:HMM:NF014021.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HVS20849.1"
                     /translation="MDAHTTDLLNEIKRRILAVSDPEQIILFGSHARGNAGLGSDVDL
                     LVIEEGLEATRRESVRLRSALRGLLVPVDVMVATPQQVERYRNAIGLIYGSILREGKV
                     IYERAANA"
     gene            complement(3309..3701)
                     /locus_tag="VHD88_03330"
     CDS             complement(3309..3701)
                     /locus_tag="VHD88_03330"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HVS20850.1"
                     /translation="MSTQIPPDKISRAVRAYFLAIRAMDAEAWANTFAEDGTTFDPVG
                     TPAITGRDALREFLQSICKNFKSVGLTEDSVFVAGNGAAVKWTGHGISSNGKEVKFEG
                     VDVFEVNEDGKIQTVRAYWNPAEMIAQL"
BASE COUNT          858 a         1107 c         1064 g          753 t
ORIGIN      
        1 agaagccttg cacgatcagc gagcgcaccg gcacgtgcgt gcgtggagac acgcgcgcga
       61 ggctctggaa aaacaagcgg tcgcgcgaca aagcgtacgg cacgcgcgca gtcgccaaca
      121 tcgaagcctg caacgcgccg aacgaagaaa tcatcaagcc catggccatc aaactcaccg
      181 ccgccggtcc cagaaacttc ttcacgactt ccgcggcgac tgacgaagaa gcgggcacgc
      241 tggcaatttg cgtcggcgtg agcgcgtggt agtaaccaaa attgacgaag agatagagcg
      301 ttatcacgat cagcatgctg ccgatcaaac cgagcggaag atttcgttcc gggcgcttca
      361 cttccccggc cataaacgtg atgttgttcc agccgtcata tgcccacagc gcgcccagca
      421 tcgccgctcc aaaaccggcg agcccgccgc ccgtcacggc gacgccttcg caagtgccgc
      481 cgatattcga caaagaaagg ttcgaccagt gaccgccagc gtaaatgaat gcgcccgcgc
      541 cgacgccgat cacgagcaag actttcaaag aagtcagaac ggtggcaaag actccgctca
      601 ccttcaccgc ggcgcagttg atcaaagtag tgatcgcgat cgcaccaagc gcgacgagtt
      661 gcagacggcc aaatgagatt tcgaatccat gcggcaggtg aatggtgaaa tagatgggct
      721 tgagcgcgcc tctcatcaaa tcgttgagaa agatcgcaaa gccaactgcc aacgccgctg
      781 ctgatgcagt tcgagcgatc acgaactgcg tccagccata gatgaacccc gacgcgggac
      841 cgtaagcttt gcgcatgatc ccgtactcgc cggcggcctc gggcatcatc gcgagcaact
      901 cagcgtaagt cagcgcgccc gcgagcgaga gcaaacccgc tacgacccat accgaaagcg
      961 ccgtccacgg cgagctgacg ttgcaggtca tcacgcgcgc tttgataaag acgccggtgc
     1021 cgatgatgtt ggcgacgttg acggagatcg cggccgtcag accaagacca cggacgagtt
     1081 gaccgttaga gagtttcgag tttggagttt cgagtttgga gttcatgacc cttgatgaaa
     1141 gcaagtcacc aaacatcatt cgcaatcagg tcttcgtacg tatcgcgctt tctgatcaga
     1201 tccgccttac cgccatccct aaccatgact gcgggaggca atggccgccc attgtacgga
     1261 aacatctggg cgagcgaata cgcgccgcta ttcaagagcg cgagcacttc gccgggctgc
     1321 acatcgcgcg gcagcaggcg atagtcgggc aagcgtccgt ggcgctcaat atcaaagtag
     1381 acatcccctg aatcgcacaa cggtccggcg actttgtatt ccgcttcgag cggttcgccg
     1441 gcgcgcgacg cggaaatcag atggtagtac cacttgtaat tgttcatcga aagcaaaatg
     1501 ttgtagccgg catcggtcaa caaccacacg tcccccgtct cgggtcttcg cttgatgtta
     1561 cgcaccgtcg tgagcacgac gccggcgtca gcaatgatgc tgcggcccgg ctcaagcaaa
     1621 atcgttacgc gatccagcag gtgttctgct tccgcatcgc gcgccgattc acgcgcaaca
     1681 cgcaaggctt cagaaagaac aatcgcaggt tcaagatcgg caccgagcat ttcgcgctcg
     1741 tgctcgggca gttgatcggc ctgcgacgcg tcgcgcaggt agttcaccgg gatgccgccg
     1801 cccagattga tgtcttcgag tgtttgaccc gtctcgcgat gaatggtcat caggtggttc
     1861 cacatgctct tgaaagcttc ggcgaacggt tcgacgtcgg gcgtctgcga acctacgtga
     1921 atgtgtatgc cgcagacgtg aatcagatca ggatttcgca agccacggcg aaaagcgtcg
     1981 aggacttctg aagaagagat gccaaacttc gaagtcaaca gcgcagtctg caaacccaga
     2041 tgcgagcgcg tgccaatctc cggcaccaga cgcagagcga tgcgcgcggg cggcaatccg
     2101 gcatttagtt ccgcgcgcgc tcgtcgcacg gcatcttcga ccagctcgat ctcgtaaatc
     2161 gaatcgacgt tgattgaata aatccccgcg cgcacagctt cgtcgagttc ttcgttcgtc
     2221 ttgctcgtgc cattgaagat gatctgatcg ggccgaaagc caacgcgcaa tgctttgtag
     2281 agttcgccgc cgctgttgac ttcgatgtcg atgcccgcgt cgcgcacgac cttcagcacg
     2341 gacatattgg aattcgcttt cgacgcgtag cagaacttga ttggccgatc gacttgcttc
     2401 gctgccgctt gcaaacgcgc gatgttttcg cgaatgcgcg actctgagaa aacaaacagc
     2461 ggagtatcgt acttgtacga aagcgcggtc gcgtccacgc cgctaatgaa gagatggttg
     2521 ttgtcgcggg cctcgagaaa acagggtatg ctccacgctg gcgcggcgat tacgtgtgcg
     2581 gtcgctgagg ctgttggctt agtcacgaag ctgctcctcc acccaaggcg agcactgttg
     2641 cagccatttc caaagatgag aacgactgat cgacctctgg aggaacgtca actccagatg
     2701 ctttcatgag gtctatcaag gtctctaaag catgcgtgcg ttggtaagga atcgctaaat
     2761 gcacgagcag cgccttaaga gatttttccg cgcactgctg agcatggaag caggcgtctt
     2821 ctcgcaaaac atcgggcaaa ttgagaacgg cgcgcgcaag tgccaggtcg gaccgtgcgc
     2881 gcagcagcca agcttccggg ctatcaggcg ttggccgctc gttcatagat gaccttcccc
     2941 tcgcgaagta tcgagccgta gatcaaacca atggcgttgc gatagcgctc gacttgttgt
     3001 ggagtagcaa ccataacgtc aacgggcaca agcaacccgc gcaaagcgct acggaggcga
     3061 acgctctctc gacgcgtcgc ttcgaggcct tcttcaataa cgagaagatc aacatcgctg
     3121 ccgagaccag cattaccgcg ggcatgcgaa ccaaacagaa tgatctgttc tggatcgctg
     3181 acggccagaa tgcggcgctt aatctcgttg agcaaatccg tggtgtgtgc gtccatcgaa
     3241 ccccgaaccg atcgaaacct acagttcttt caggatgagc atagccgcgc ctactaacga
     3301 tcgtccagtc acaactgtgc aatcatctcc gccggattcc agtaggcgcg gacagtttga
     3361 atcttgccgt cttcgttcac ttcgaaaacg tcgacgcctt cgaacttcac ttcttttccg
     3421 tttgagctta tgccgtggcc ggtccacttc accgccgcgc cgttgccggc aacgaaaacc
     3481 gagtcttcgg tcaggccgac gcttttgaag ttcttgcaga tcgattgaag gaattcgcgc
     3541 aacgcgtcgc ggccggtgat cgcgggcgtg ccgaccggat cgaaagtggt tccgtcttcg
     3601 gcgaaagtgt tggcccacgc ctcggcatcc atcgcgcgga tcgccaggaa gtaagcgcgc
     3661 acggcacgcg agattttgtc cggtggaatt tgcgtgctca tctgcttttc tcttgagttt
     3721 cgttagcggt gccggataga tgttcgatca accaggcgtt tacgagtgtc tccagcgaca
     3781 ct
//
LOCUS       DASZZE010000166         2451 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_38622, whole genome shotgun sequence.
ACCESSION   DASZZE010000166 DASZZE010000000
VERSION     DASZZE010000166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2451)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2451)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2451
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38622"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..991
                     /locus_tag="VHD88_03335"
     CDS             <1..991
                     /locus_tag="VHD88_03335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20851.1"
                     /translation="INPEHYGVLYLQFEKAIHRINPALQLGGPSLQDIEQSQVPGRIE
                     FGKAGWMGRFLEYLKRRGQLDKFTFFSFEWYPFPGDCRPQQLAEGTQMLTNALNEMQN
                     GGLTHDIPWLMTEYGYSAFGARAEVDIDGALLNADSVGRFLTIGGEAAYLYGYEASEI
                     IREQECSSGNNMLFFRDDRGHIKKPTATYWGARLLTQEWLKPGDEPHEIYPAVSNVRN
                     KDGEELVTAYAVHRPDGLWALLLINRDPNRVFQASVIFRNTSSGSVRGFEGPLDLYQY
                     SSQQYLLGGPPDNPYPVKADEPEHRIVQSRHLAGPQISLRPYSLTVLRGALSR"
     gene            complement(1001..>2451)
                     /gene="hutH"
                     /locus_tag="VHD88_03340"
     CDS             complement(1001..>2451)
                     /gene="hutH"
                     /locus_tag="VHD88_03340"
                     /EC_number="4.3.1.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR01225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004397 - histidine ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="histidine ammonia-lyase"
                     /protein_id="HVS20852.1"
                     /translation="GEEHVALSAGARARMEKSRQVVEKIVAEGRTVYGINTGFGRLSD
                     VHIPASELRELQLNLVRSTACGVGPPLSEPETRAMLLLRANVLALGLSGARPVVVETL
                     IALLERGLVPVIPEKGSVGASGDLAPLAHLALTVIGEGEAFYRGERMPSADALRLAEI
                     EPVQLEAKEGLALLNGTQGMTAVGALALHRAEQLARVADIAGAMTLEALRDTPVAFDA
                     RIHAARPHAGQIEVAGHLRELLRDSEIRQSHLENDPRVQDAYSLRCMPQVHGAVRGAL
                     AHAREVVETETGSVTDNPLVFAETQEVLSGGNFHGAPVAFALDYAAIVVTDLAGISER
                     RIERLVNPDLNEGLPPFLTTHPGTASGYMVTQIVAASLINEMKVLAHPASVDNLPTSG
                     GKEDHVSMGMTAATKLRSIVDNAEHVIAIELLSAAEGLEYRAPLQPGRGVKQAYDIVR
                     KHVPRLTRDRALSGDIQAIAKAIREGEFGSVI"
BASE COUNT          492 a          729 c          725 g          505 t
ORIGIN      
        1 cataaatccg gagcattacg gagtcttgta ccttcagttt gaaaaggcaa ttcacagaat
       61 caatcccgcg cttcagctcg gcgggccgag cctgcaggac atcgagcagt ctcaggtccc
      121 cggcagaatt gagttcggta aagccggatg gatgggtcgc ttcctcgagt atctgaagcg
      181 ccgcgggcag ctcgacaagt tcacgttctt ttcgttcgag tggtatccgt tcccaggtga
      241 ctgtcggcct cagcagctcg ccgaaggcac gcaaatgctt acgaatgcgc tgaacgaaat
      301 gcagaatggc ggactcacgc atgacattcc ctggcttatg accgagtacg gctattccgc
      361 tttcggcgcg cgggccgaag tggacatcga tggcgcgttg ctgaacgctg acagcgtggg
      421 tcgctttcta acgataggag gcgaggcggc gtatctctac ggctacgagg caagcgagat
      481 catcagagag caggaatgct catccggaaa caatatgctc ttcttccgcg acgaccgcgg
      541 ccacatcaag aagcccacgg caacttactg gggcgcgcgt ctgttaaccc aggaatggtt
      601 gaaaccgggt gacgaacctc atgagatcta tccggcagtt tccaacgtgc gtaataaaga
      661 cggagaagaa ctcgtcacgg cttacgccgt tcatcggccc gacggactgt gggcgttgct
      721 gctgatcaat cgagatccaa accgcgtctt tcaggctagc gtgatctttc gcaatacttc
      781 atctggttct gtccgaggtt ttgaggggcc actcgatctt tatcagtatt caagtcagca
      841 gtacttgctc ggtggcccgc cggataatcc atatccggtg aaagccgatg aacccgaaca
      901 cagaattgtt caatcgcgac atctcgccgg gccgcagatc tctttgcggc cttattcgct
      961 gacagtgctg cgcggggcgc tgagccgatg acgtgcggag ttatatgacg gatccaaact
     1021 caccttcgcg aattgctttc gcgatcgctt gaatgtcacc cgacaacgcg cgatcgcgag
     1081 tgaggcgcgg cacatgcttg cgaacgatgt cgtaagcttg cttcacgccg cgaccgggtt
     1141 gcagcggcgc gcgatattcc aatccttccg cggccgagag cagttcgatc gcaatcacgt
     1201 gttcggcgtt gtcaacgatc gaacgcaact tcgtggcggc ggtcatcccc atcgaaacgt
     1261 gatcttcttt gccgccggaa gtcggcaggt tatcaacgct ggccggatgc gccagcactt
     1321 tcatttcgtt gatcaagctt gcggcaacga tctgcgtcac catgtaaccc gaagccgtgc
     1381 cgggatgcgt ggtgagaaac ggaggcagac cttcgttcaa atcgggattg accaaacgct
     1441 cgatgcggcg ctcgctaatg ccggcgagat cggtgacaac aatcgcggca tagtcgagcg
     1501 cgaacgcgac gggcgcgcca tgaaagttgc cgcctgataa gacttcctga gtctctgcaa
     1561 acaccagtgg attgtcggtc acgcttccgg tttctgtctc gacgacttcg cgtgcgtgcg
     1621 cgagcgcgcc gcgcaccgcg ccgtgcactt gcggcatgca gcgcagcgag taagcgtcct
     1681 gcacgcgcgg atcattttcc agatgcgatt ggcgaatctc gctgtcgcgc aaaagctcgc
     1741 gcagatgccc ggcgacttcg atctgtccgg cgtgcggacg tgcggcgtga atgcgcgcgt
     1801 cgaaagctac gggcgtgtcg cgcaaagctt cgagcgtcat cgcgcccgcg atgtccgcga
     1861 cgcgcgcgag ttgttcggcc cgatgcaatg ccaacgctcc aactgcggtc atgccctgcg
     1921 ttccattcaa cagcgcgaga ccttctttcg cttcaagctg aaccggttcg atctcggcga
     1981 gacgcagcgc gtccgcgctt ggcatccgct cgccgcgata gaaagcttcg ccttcaccga
     2041 tgactgtgag cgccagatgg gccagcggcg ccagatcgcc gctcgcgccg accgaacctt
     2101 tttcaggaat gacgggaacg aggccgcgtt cgagcagcgc gatcagagtt tcgacaacaa
     2161 ccggacgcgc gccgctcagg cccagcgcca gaacgttcgc gcgcaacagc agcatcgctc
     2221 tcgtctctgg ttctgagagt ggcgggccaa ctccgcacgc cgtgctgcgc accaggttca
     2281 gttgtaattc gcgaagttcc gatgcgggga tgtgaacatc cgagaggcgg ccaaagcccg
     2341 tgttgatgcc ataaactgtg cggccttcgg cgacgatctt ttctactact tgtcgtgatt
     2401 tttccatccg ggcgcgcgcg ccggcggaaa gcgccacgtg ctcttcgccg c
//
LOCUS       DASZZE010000167        15343 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_201577, whole genome shotgun sequence.
ACCESSION   DASZZE010000167 DASZZE010000000
VERSION     DASZZE010000167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 15343)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15343)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15343
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201577"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1178
                     /locus_tag="VHD88_03345"
     CDS             <1..1178
                     /locus_tag="VHD88_03345"
                     /inference="COORDINATES: protein motif:HMM:NF012379.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid--tRNA ligase-related protein"
                     /protein_id="HVS20853.1"
                     /translation="LTPREVFELRSKVVREIRRFLDEHGYVEVETPMLTPLATGAAAR
                     PFKTHHNALDIDLYARIAPELYLKRLVVGGFEKVYELNRNFRNEGISTKHNPEFTMLE
                     FYAAYMDVNGMMDFCEKLLRSVVYTVTGHTHLRYGEHEIDFSRAFQRMTMKEAVSTWW
                     RLRFQYCPSAGEVNDQWFDDGKRIAFLAYFLKLLGLGSLDLVIEAGYLGDEKRKKLDE
                     EVRFSWDRAKAYQTTTDARGQQASEVAEDLVYLFEELTEPNLIQPTFITDFPKPISPL
                     SKASPSDPAVAERFEYFVAGLESANGFSELNDPEEQYQRFKDQVQQRERGDEEAMVMD
                     EDYIRALSYGMPPAAGIGIGIDRLVMLLANRHSIRDVILFPHMRPEKRADDEGGSGQ"
     gene            1454..1828
                     /locus_tag="VHD88_03350"
     CDS             1454..1828
                     /locus_tag="VHD88_03350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20854.1"
                     /translation="MIRKISALTIVTLMAGVLFAQEKTVTITGNLIDNACAESAKDLG
                     TRAKNHSTSCAMMDGCEKSGYAVYASDNKLYKLDDKGNDSAADLLKNTKTKKGLKVSV
                     EGTVDGDTIKVTKLTEITDASN"
     gene            complement(1972..2463)
                     /locus_tag="VHD88_03355"
     CDS             complement(1972..2463)
                     /locus_tag="VHD88_03355"
                     /inference="COORDINATES: protein motif:HMM:NF025887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HVS20855.1"
                     /translation="MKKYLPFAALLLLAFASLSFAQPNPQASPSPAAKPKPRMSKAQL
                     QNKLSAAEKKLWEAWKNKDAKPFKSALSADFVMIEETGVSGKDGVVKEITSMPCEVKS
                     YELSDWKLTMINSGTALLTYKGKADGTCAGTAIPPVWASSVWVNRGGKWLAFSHQETP
                     VKP"
     gene            complement(2700..3845)
                     /locus_tag="VHD88_03360"
     CDS             complement(2700..3845)
                     /locus_tag="VHD88_03360"
                     /inference="COORDINATES: protein motif:HMM:NF026220.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YCF48-related protein"
                     /protein_id="HVS20856.1"
                     /translation="MRIFGGPFIAPLQGAQLLEYHFQGQRAKRLSLATIFRAFGTDHV
                     LPSAFCLLSSAFCLLLSAFCLLPSAYGSTWTRQQSGTMAWLHAVYFLDQNRGWVAGSG
                     GTLLATDNSGRTWKKLFPLTKDNLRDVYFASEKNGWLVCEHDPLKLKSNDEPRAYLLK
                     TTDGGSSWQRVNLAGFDVNARLVRAVFADAERGWVFGESGVVFNTRDGGAHWVPQPLP
                     TKHLLLGGAFVDYRHGWLVGAGATIVQTTDGGATWKIGFVRDGASARFTAASFIGNNL
                     GWAVGTEGRVFATTDGGGAWFAQRSNAETDLSDVRFVDASEGWVAGAQGTLLRTTDGG
                     LHWSPEPSGTTHALERLFFIDRDHGWAVGFGGIILTYAQAGAPRLKS"
     gene            complement(3988..4854)
                     /locus_tag="VHD88_03365"
     CDS             complement(3988..4854)
                     /locus_tag="VHD88_03365"
                     /inference="COORDINATES: protein motif:HMM:NF014606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_function: GO:0015159 - polysaccharide transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis/export family
                     protein"
                     /protein_id="HVS20857.1"
                     /translation="MNKFLTGTTAFAIATAIGASAFAQSPTNATRQRKATMDGARQTA
                     VDAKPFSEPAPATDAAADKNTAKKDDKSKPADAQTNRTDQSSEEAAIIPYYNNFFTTY
                     RLGPEDVISVSVFGQDRYSKQGIVIPPSGRISLALIPDGIFVNGKTVDQVAELVKKRY
                     DEYIIDPQVSVSLDRAGSYRYSVVGDVATPGIKPMSHRLSVSEAIAEAGGVLQTGNRK
                     KIVVLRKQANGRLAQIPVDLSAIYRGQKPDSVYLVPGDQIIVPGNTLKKLQTIMGFTQ
                     VLSFARVFTGGW"
     gene            complement(4936..6321)
                     /locus_tag="VHD88_03370"
     CDS             complement(4936..6321)
                     /locus_tag="VHD88_03370"
                     /inference="COORDINATES: protein motif:HMM:TIGR03013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03013 family XrtA/PEP-CTERM system
                     glycosyltransferase"
                     /protein_id="HVS20858.1"
                     /translation="MKASRLNARTVLLLLSEAMLLFGGMIVAVYLRLGVADAEEALIS
                     RHGLYKVGLATVFCLTAFYLFDLYDFVVMHDRRELVLRLLQALGLAWVALALIFYAVP
                     QVMIGRGVSLISLPLALALMVGWRVAIHWVLGHPELGERILIVGSGPFAIEIAKETLG
                     RPDAGFRVVGFVDNDPALVGKSLINPKVIGLTSELGALVRRENIDRIVVAIGDRRGQF
                     PTQELLRLSLSGDVSIEESASFYERLTGRVLLDMIRPSWLIFSSRGQRVRMNEMALAI
                     MNRTVALIGAMLSLPIAMATALLITIDSRGPLLYKQERVGKNGRPFTLMKFRSMRVDA
                     EKNGPVWAKTDDQRMTRVGRIIRKIRVDEIPQFWNILRGDMNFVGPRPERPHFVAQLA
                     HEISFYEQRHLIAPGLTGWAQIKYPYGASIEDARQKLQYDLYYIKNQSLTLDAIIMFE
                     TIKTILFGRGT"
     gene            complement(6362..7459)
                     /locus_tag="VHD88_03375"
     CDS             complement(6362..7459)
                     /locus_tag="VHD88_03375"
                     /EC_number="2.7.10.2"
                     /inference="COORDINATES: protein motif:HMM:NF013793.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004713 - protein tyrosine kinase activity
                     [Evidence IEA];
                     GO_function: GO:0004715 - non-membrane spanning protein
                     tyrosine kinase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CpsD/CapB family tyrosine-protein kinase"
                     /protein_id="HVS20859.1"
                     /translation="MGRVYDALKRAESAPRQPFKASTEPVRRNGNSDNVAYFVPKNGH
                     EHPWETAPSTGAPAAFSSASTAHTAEATGGPALPGGPASRDAGATLGAVGSTRVAEFS
                     SREVLAARVEPHLVAITEPRSPECEQFRALRTRLLQAGERERKRAFVITSAGVGEGKT
                     LTTLNLAWLLAQTDGVKALVIDADLRQPCAADYLGIEAEYGLSEVLTGETRFAEAIIR
                     LEPSGLHLLPGGAARDDVAELLSGPRFGRLLDEARKLFDYVIIDAPPLGVFTDANLLI
                     NRADAALLVVRASKTRYSVVDGLLEQLPRERLLGVVLNRAAVRPEDTAYYYQPRHQRA
                     VLEVVEETESAGDHEVNGQPEMIYIEEDVVS"
     gene            complement(7462..8574)
                     /locus_tag="VHD88_03380"
     CDS             complement(7462..8574)
                     /locus_tag="VHD88_03380"
                     /inference="COORDINATES: protein motif:HMM:NF024793.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HVS20860.1"
                     /translation="MYAEYYGLREMPFALTPDPRYIYFTPSHTEVMANLHYGVESGKG
                     LIVVTGEVGTGKTTVLRWMMRRMDRTVMVAYIFNPRLSVPEFYQHLAALFELRDWETK
                     SDLLLELGKVLESRHTRGLRTVLIIDEAHGLSPNVLEEVRLLCNFESDAAKHLQIVLT
                     GQPELCKVLNNPDLRQLKQRVALRCEVSALPNVEETAHYITSRLKVAGAASAEIFSPG
                     AVDYIFRCSEGIPRNINNLCDNALLNGFAASEPIISRAIVEEVAETFDLLPRADRAFQ
                     SGEAPEAPARIFNAAGRAELWSAGNGNGNGNGNGSGMGSANILSDSRFSSGTSSFSTP
                     QSEPELVINEYAHSDRPPTTIEELGSAFSRSGLVRE"
     gene            complement(8590..10206)
                     /locus_tag="VHD88_03385"
     CDS             complement(8590..10206)
                     /locus_tag="VHD88_03385"
                     /inference="COORDINATES: protein motif:HMM:NF014732.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNVR domain-containing protein"
                     /protein_id="HVS20861.1"
                     /translation="MSVEFRPRKLGEYASIARKRKWLILLPTIAIGLAIAYVVFRLPD
                     IYESATLIVVKPSTLPTTVVPTITEDALTRELTSISQVVTSRSSLQPLMEKYDLYHEE
                     RLRGEPMELLIDQMRKQIKVEVNTTRNEITNGFNITYRGPDPKTTQAVAAELASKYID
                     EQTKGTVNAGTSAKQFIEEQVRQAKEELDTIDTQRLSYLQQNINNLPSQSQALVGRLT
                     ALHEEQKALIAEQGRARDLGAAYRSQLGDITKSYQQEIALAAENTTDPKTTMAWAELV
                     RRHSELEAELQSLTTQYKEKHPDVIAKQKQIVSVKSEQDQMIADWKTRTEERKQKLIQ
                     LSDPRILTLKTQITMVDSDMERQTKLLNETNAQIAELDGRINAIPNAEVGIEAIDREY
                     QTKKLNYDNLLAQQQKVVVGADAAKDQQSGGIQVVDPANLPEHPVAPKRFMLTAAGFG
                     AGLVLGLLLAIASELRRLFTIQTAEDAKHYTGLPVLAAIPELLTPAEARAIPRRQTLA
                     MAAGLAAAFVTVPMLAFVLRLTHVFEKFLL"
     gene            complement(10341..12668)
                     /locus_tag="VHD88_03390"
     CDS             complement(10341..12668)
                     /locus_tag="VHD88_03390"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HVS20862.1"
                     /translation="MIIGACTTPEKAKAQHVARGQALLKDKKFQEASLEFRSALQIDD
                     RLADAHWGLANAYEGLQRYQEAFEEMKQVVELDAKNLDVRTRLGNYYLAGGQQSPAAV
                     SEAERLAKEVLQKDPNHIEGHILMGSVLFAQDHKPEAFAELKRAIELDPKRVESYLSL
                     ARFYVLTKDSVTAESIYQRAISVNATSALAHYEYGKFLVQSNRTDAAEAEFQKAVEVD
                     PANREARFVLASFYLVNKRFAKAEEAYIALAEFDKDKPEGRSVLADFYASVGRLDEAM
                     AIYKEVAAKSPDYTQGHYRLAEITLMRGDFAGAKNEVDAVLKNDAHDRQALILRARIE
                     MQSNEPNDLKVAVEDLKEVLRQEPNSRPGLFFMAEASFRQGQIDQARAFANDLERNYP
                     DYLPGKLMQVQINLAGGDAKSALQLSTQLQDRLAKASPDKDTSPQMLAELRAKNLIAH
                     GSAALQMRDTKTARQDFLAAHDIAPRSTDVYVNLASVALAENKADEAVNFYNNALQID
                     GVNFNALRGLINIYASQKHTDQAHARIDQAIGSELNNAGLHFLKGQIYGFEMNALGAE
                     AEFRRALEIDGNYLAAYSALGALFVNTNQQDRAITEYNKIVERRPDNAAAYTLIGMLE
                     MNRQNVDAAVDNYRKALAQDGNAIFAANNLAWLYAVYNKGNMDEAVRLAQGAVQSNPE
                     VPSFADTLGWVYYKKGLYGAAAEQLKKAVSVDEAEARQSNSTPTPTYHFHLGVALAAK
                     GDKAGARREIESALRLSGKTSFPEADEARKTLASL"
     gene            complement(13086..13745)
                     /locus_tag="VHD88_03395"
     CDS             complement(13086..13745)
                     /locus_tag="VHD88_03395"
                     /inference="COORDINATES: protein motif:HMM:NF023410.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EpsI family protein"
                     /protein_id="HVS20863.1"
                     /translation="MIDIRTNTLRFWILLATLLLGGGIINVWERAGEARVSRRPLKDF
                     PAQLGAWRQVGGDFRFDEETEKVLRADDYISRNFESPDGRVASFYVGYYATQRNGATY
                     HSPLNCLPGSGWTMSDGARITITPADGGAQFEANRYVVENGKDRALMVYWYQGRGRAT
                     ASEYWGKIYTVMDSVRWRRSDGAMVRLMVPLGNSEEEAQKAAVELASQAASQLPAFVP
                     N"
     gene            complement(13951..14937)
                     /gene="xrt"
                     /locus_tag="VHD88_03400"
     CDS             complement(13951..14937)
                     /gene="xrt"
                     /locus_tag="VHD88_03400"
                     /EC_number="3.4.22.-"
                     /inference="COORDINATES: protein motif:HMM:NF021254.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004197 - cysteine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0043687 - post-translational protein
                     modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exosortase"
                     /protein_id="HVS20864.1"
                     /translation="MTKMSVAIPRKFYQPFAIAVALAFVYFTVLVKLGRDWWSDENYS
                     HGLLIPFVIGYILWRERKRFREEAERPALLWGAIGVGVSLLALWAGTAGAELFVQRIS
                     LVLMLVSVAIYFSGFRVLRLAAVPLSLMLLSIPIPQIVFNKIAFPLQLFASRCAVGAM
                     SFFNIPVLRQGNVIELMPLGSSVPKKLAVVEACSGIRSLMTLVTLAVVYAYFTRPKSR
                     PRHLAIWRAVILIVAAVPIAILTNVLRVSGTGVLAHYYGTRVADGFFHSFSGWVIYVA
                     AAALLFATGWLLDRVGRLSQKEPGRTAAVAEESAKRTIENSPPIYRWGHARK"
     gene            complement(15042..>15343)
                     /locus_tag="VHD88_03405"
     CDS             complement(15042..>15343)
                     /locus_tag="VHD88_03405"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024914.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HVS20865.1"
                     /translation="LATRVGGIPELVTDGVTGYLVGRSDAEAMSDRILTLLADPELRT
                     RMGQAGRETVSAKFDLRKNVAQLITSYGISEVEATSPAQTSVMVRKNILSLLRNT"
BASE COUNT         3253 a         4396 c         4359 g         3335 t
ORIGIN      
        1 gactgacgcc gcgcgaagtg ttcgagttgc gctcgaaagt agtgcgcgag attcgccgct
       61 tcctggacga acacggttat gtcgaagtcg aaacgccgat gctgacgcct ttggctaccg
      121 gcgccgccgc gcggccgttc aagacgcatc acaacgcgct ggacatcgat ctctacgcgc
      181 gcatcgcgcc ggaactttat ttgaagcggc tggtcgtcgg cggctttgaa aaggtctatg
      241 aactgaaccg caactttcgc aacgaaggta tctcaaccaa gcacaatccc gaattcacga
      301 tgctggaatt ctacgcggcc tacatggacg tgaacggaat gatggatttc tgcgagaagc
      361 tgttgcggtc agtcgtctac accgtcactg gtcacacgca cctgcgttat ggtgagcacg
      421 agattgattt ttcgcgggcg tttcagcgga tgacgatgaa ggaggctgta tcgacttggt
      481 ggcggctacg ctttcaatat tgcccaagcg ccggagaagt aaacgaccaa tggtttgacg
      541 atggaaagcg gatcgctttt cttgcctact ttctcaaatt gctcggactg ggaagccttg
      601 atcttgtcat tgaagctggc tacctaggag atgaaaagcg aaagaagcta gatgaggaag
      661 ttagattctc atgggatcgg gccaaagctt accaaacaac gactgatgcg cgaggacaac
      721 aagcaagcga agtcgcagaa gatttggttt atctttttga ggagttaacg gagccgaatc
      781 taatccagcc gaccttcatc actgattttc cgaagccgat ctctccgctt tcaaaagctt
      841 caccgtctga tcccgccgtg gccgaacgct ttgaatactt tgtcgctgga ctcgaatccg
      901 cgaacggctt ctcggagctg aacgatcccg aagagcagta tcagcgcttc aaggatcagg
      961 tgcagcagcg cgagcggggc gatgaagagg cgatggtgat ggacgaagac tacattcgcg
     1021 cgctgtctta tggcatgccg ccggcggcgg gaatcgggat tggcattgac cggctggtga
     1081 tgctgctcgc caacagacat tcgattcgcg acgtaatctt gtttccgcac atgcggccgg
     1141 aaaagcgagc ggacgacgag ggcggatcgg ggcagtagcc cgcgcgtcag caagggctcg
     1201 tattctgttt ttaagatgag ccctccctca cggtcgggct actgccccga gggttggtac
     1261 ggaaccgcac cgcgtcggct tcgccgactg gttgaatcat ttcgaggcgt gatactattc
     1321 gcgcacctca gacccgaaca accggggcag tagcccgacc gtgagggagg gctcaagaaa
     1381 atgcaggcaa gataccggtg caccgcaggc aaggatgcct gcgctccggt agccgaaata
     1441 aggagaccca aagatgattc gcaaaattag cgctttaacg atcgtaacat tgatggccgg
     1501 agttttgttc gctcaggaaa agaccgtgac gattaccggc aatctgatcg acaacgcctg
     1561 cgccgaatcc gccaaggacc tgggcacgcg cgccaagaac cattcgacca gttgcgccat
     1621 gatggacggg tgcgaaaaga gcggctatgc ggtttatgct tccgacaaca aactctacaa
     1681 actcgatgac aaaggcaacg acagcgccgc tgacttgttg aagaacacga agaccaagaa
     1741 gggtctgaag gtttcggtcg aaggcactgt tgacggcgac acgatcaagg tgacgaagct
     1801 tacggaaatc actgacgcgt cgaattaacg ccgggtttcg cttacgcaaa agatcaaagc
     1861 ccgcgcgacg aaggacgcaa ccttcgcggc gcgggcgatt tgttcgcgat gctgctttgc
     1921 ctggaaacga aagccgagcc ctccctcacg gtcgggcttc tgacacgcta ctcaaggttt
     1981 caccggcgtc tcctgatgcg aaaacgccag ccatttgccg ccgcgattca cccagacact
     2041 gctggcccac acgggcggta tggccgtgcc ggcgcaggtc ccgtcggctt tgcccttgta
     2101 ggtcagcagc gcagtgccgg aattgatcat agtcagcttc cagtcgctaa gctcgtaaga
     2161 cttcacctcg caaggcatcg atgtaatttc cttcacgacc ccgtccttgc ccgacacgcc
     2221 ggtttcctcg atcatcacga aatcggcaga tagcgctgac ttgaagggct tcgcgtcctt
     2281 gttcttccag gcttcccaca acttcttttc ggcggccgag agtttgttct gaagctgggc
     2341 tttgctcatc ctcggcttcg gctttgccgc gggcgaaggc gacgcctgcg gatttggttg
     2401 cgcaaacgaa agggacgcaa atgccaacaa gagcagggca gcaaagggta gatatttttt
     2461 catcaggttc tcctcgaaaa agttttccaa aaacggtatg gagcgagcgc agcacttcta
     2521 ctactttacg cgcactgtgt caataacggg acagtaacgg ggcagtagcc cgaccgtgag
     2581 ggagggctcg cggcactaga aaccgatcgc atttgtagac cttattgatc gtcgagaagt
     2641 tgagaatgcc aaagggagcc ctccctcacg gtcgggctac tgccacgctc cgcggattct
     2701 tacgacttca accgcggcgc gccggcctga gcataggtga ggattattcc gccaaaccca
     2761 actgcccagc cgtgatctcg atcgatgaag aataggcgct cgagcgcgtg cgttgtgccg
     2821 ctcggttccg gagaccagtg caagccacca tcggttgtgc gcagcagcgt tccctgcgcg
     2881 ccggcgaccc agccttccga agcatcaaca aatcttacgt cggataaatc cgtttccgcg
     2941 tttgagcgct gtgcgaacca agcgccgccg ccatcggtcg tcgcgaacac gcggccttcg
     3001 gtgcctacag cccaacctaa attatttccg atgaaactcg cagcggtgaa gcgtgcgctt
     3061 gcaccatcgc gaacgaatcc gattttccac gtcgcgccgc cgtcggtggt ttgtacgatc
     3121 gttgcgcccg cgcccaccag ccaaccgtgt cggtaatcaa cgaacgcgcc gcctagcaag
     3181 agatgttttg tcggcaaagg ttgtggcacc caatgcgcgc cgccgtcacg cgtgttgaag
     3241 acgacgcccg actcgccaaa cacccaaccg cgctcagcgt cagcgaacac ggcgcgcacc
     3301 aggcgcgcgt tgacatcgaa tccggcgagg ttcacacgct gccaactgga gccaccgtct
     3361 gtcgttttca acaagtacgc gcgcggctcg tcgttcgact tgagtttgag tgggtcatgc
     3421 tcgcacacga gccagccatt tttttcgctg gcaaagtaaa cgtcgcggag attgtccttc
     3481 gtcagcggga agagtttttt ccaagtgcgc ccgctattgt ctgtggcgag cagcgtgccg
     3541 ccgctgccgg caacccagcc gcgattttga tcgagaaaat aaaccgcgtg cagccaggcc
     3601 atcgtgcctg attgttggcg agtccaggtc gagccgtagg cagaaggcag taggcagaag
     3661 gcagaaagca gaagacagaa ggcagaagac agaagacaga aggcagaagg aaggacatga
     3721 tcagtgccga aggcgcggaa gatggtagcc agggacaagc gcttcgcgcg ctgcccctgg
     3781 aaatgatatt caagcaattg cgcgccctga aggggcgcga tgaatggtcc gccaaatatc
     3841 ctcatgccat gcgactaatt tctgtcgccc ctgcggggct gcagttcttt tccttggaac
     3901 ctaccagggg cggcgcgctg caacgcgctt gcccctggct accttctgcc gccatctacg
     3961 atggctcatt ggactgccta cttttgttca ccatccgccc gtaaatacgc gcgcgaagct
     4021 caggacctgg gtgaagccca tgatggtctg cagtttcttc aaagtgttgc cgggaacgat
     4081 gatttgatca cccgggacta agtaaactga gtcaggcttc tgtccacgat agatcgcgga
     4141 aaggtcaacc ggaatctgcg ccaaacgtcc gttcgcttgt ttgcgcagga ctacgatttt
     4201 tttccgattg ccggtctgca agacgccgcc cgcttcagca atcgcttcac tcaccgacaa
     4261 acggtggctc atcggtttga ttcccggggt ggcgacgtcg ccaaccacgc tgtagcgata
     4321 cgatccggcg cgatcgagcg agacagacac ttgcggatcg atgatgtact cgtcatagcg
     4381 tttcttgacc agctcggcta cctgatccac tgtcttgcca ttgacgaaga tgccgtcggg
     4441 gatcagcgcc agcgagatcc gtccgctcgg cggaatcaca atgccttgtt tcgagtaacg
     4501 atcctgaccg aagacgctga cagagatcac atcctcagga ccgagacgat aggtcgtgaa
     4561 gaagttgttg tagtaaggaa tgattgcggc ttcctcagac gactgatcgg tgcggttggt
     4621 ctgcgcgtcg gcaggtttgc tcttgtcgtc cttcttcgcg gtgttcttgt cggcggctgc
     4681 gtcagtcgcc ggagccggct cgctaaaagg cttcgcgtcc accgcggttt gccgcgcgcc
     4741 gtccatcgtt gctttgcgct ggcgagtcgc gttggttggt gactgcgcga atgcgctcgc
     4801 gccgattgcc gttgcgatcg cgaatgccgt tgttccggtt aagaatttgt tcatgacttc
     4861 tacctccagg tacccgcccg ctaccgcagg cggtactaac tgtttacccg gtcgctatcg
     4921 ctcccggttc tgtaactacg tgccgcgccc aaacagaatt gtcttgatcg tttcgaacat
     4981 gatgatcgcg tcgagcgtga ggctctggtt cttgatgtaa taaagatcgt attgcagttt
     5041 ctgcctggcg tcttcgattg acgcgccgta cggatatttg atctgcgccc agccagtgag
     5101 cccgggcgcg atcaaatgcc gctgttcgta gaacgaaatc tcatgcgcca gttgcgcgac
     5161 gaagtgcgga cgctcaggcc gcgggccaac aaagttcatg tcgccccgca gaatgttcca
     5221 gaactgtgga atctcgtcca cgcgaatttt gcgaatgatt cggccgacgc gcgtcatgcg
     5281 ctggtcgtct gttttggccc aaactggtcc gttcttttca gcatcgacgc gcatggagcg
     5341 aaacttcatg agcgtgaacg ggcgaccgtt cttgccgacg cgttcctgtt tgtaaagcag
     5401 cggcccgcgc gaatcgattg tgatcaaaag tgcggtagcc atcgcaatcg gcaaagaaag
     5461 catcgctccg attaaggcga ccgttcgatt catgatggcg agcgccatct cgttcatccg
     5521 cacgcgttgc ccgcggctgg aaaagatcag ccacgacggc cggatcatgt cgagcaaaac
     5581 gcgtcccgta aggcgttcat agaacgatgc gctctcttca atggaaacgt cgcccgaaag
     5641 actcagccgc aaaagctcct gcgtgggaaa ctggccgcga cgatcgccga ttgcgacgac
     5701 gatgcgatcg atgttttcac ggcgaaccag cgcgcccaac tcagaagtca aaccaatcac
     5761 tttcggattg atcaggctct tgccgaccag ggccggatcg ttatcgacaa aaccaacgac
     5821 gcgaaaacct gcatcgggcc ggccgagagt ttcttttgca atctcaatcg cgaaaggacc
     5881 agagccgacg atcaaaatgc gctcgccaag ttcaggatgg cccagcaccc aatgaattgc
     5941 cacgcgccaa ccaaccatca acgccagcgc caacggcagc gaaatcagcg agacgccgcg
     6001 tccgatcatt acttgcggca cggcatagaa aattaaggcg agggccaccc atgcgagtcc
     6061 gagcgcttgc agcaaacgca aaacgagttc gcgccggtcg tgcatgacga caaagtcgta
     6121 aagatcgaaa aggtagaacg cggtgagaca aaacaccgtc gcgagtccca ccttgtaaag
     6181 tccgtggcgc gaaatcagcg cctcttcggc atccgcgacg cccaaacgca gatacacggc
     6241 tacgatcatc ccgccgaaca gcaacatcgc ttcgctgagc agcagcagaa ccgtgcgcgc
     6301 gttgagtctg gatgccttca ttgacttgcg cccttgctga cgcgcgggct tctgcctttc
     6361 ctcaagagac tacgtcctcc tcgatgtaga tcatttcggg ttgcccgttg acttcatgat
     6421 cgccggcact ttcagtttcc tcaacaactt ccaagacggc gcgctgatgg cgcggctggt
     6481 aatagtaggc agtgtcttca ggacgaacgg ctgcgcgatt gagcacaaca ccgagcaatc
     6541 gttcgcgcgg cagttgttca agcagaccat cgacgactga atagcgagtc tttgacgcgc
     6601 gcacaaccaa cagcgccgcg tcagcgcgat tgatcagcaa gttagcatcg gtgaaaacgc
     6661 cgagcggtgg cgcgtcaatg atgacgtagt cgaaaagttt tcgtgcttcg tcgagcaagc
     6721 gaccgaaccg cggccccgaa agcaactcgg ccacgtcgtc gcgggctgca ccgccaggca
     6781 acaaatgcag tcccgacggt tcaagtctta tgatcgcttc cgcaaatcga gtctcgccgg
     6841 tcaacacctc agacaaaccg tactccgctt caatgccgag ataatcagca gcgcacggct
     6901 gtcgcagatc cgcgtcgatg accagcgcct tgacgccgtc ggtttgcgcc aacagccagg
     6961 cgagattgag agtcgtcaac gtcttgcctt cgccgacgcc ggcgctcgta atcacgaatg
     7021 cgcgcttacg ctcgcgctcg cctgcttgca gcagacgcgt gcgcagcgcg cgaaattgtt
     7081 cgcactcagg cgaacgaggt tcagtgatcg ctacgagatg cggttcgacg cgcgcggcca
     7141 aaacttctct tgacgagaat tcggctacgc gcgtcgatcc aacagcgccc aaggttgccc
     7201 cagcatcacg cgaagctggt ccgccgggga gtgccggccc gccggtcgcc tccgcagtgt
     7261 gcgcagtgga cgctgaactg aatgccgccg gcgcgcccgt ggagggcgca gtctcccacg
     7321 gatgttcgtg cccgttcttc ggaacgaagt aggcgacgtt atccgagttg ccgttgcggc
     7381 gaactggttc agtcgaagct ttgaaaggtt ggcgcggcgc actctcggcg cgcttcagcg
     7441 catcgtaaac tctgcccata gttattccct cacgaggccc gaacggctga aagccgatcc
     7501 gagttcttca atggtggttg gaggtcggtc gctgtgcgcg tactcattta tgacgagttc
     7561 gggctcagac tgcggggtcg aaaaagaaga tgtgccggag gaaaaacgac tatcggacaa
     7621 gatattggcg cttcccatcc cgctcccatt gccgttccca ttgccattac cgttaccggc
     7681 ggaccagagt tccgcacgtc cggcggcgtt gaaaattcgc gcgggtgctt cgggcgcctc
     7741 gccggattga aaagcgcgat cggcacgcgg cagcaggtca aaagtctcgg ccacctcttc
     7801 gacgatcgcg cggctgatga tgggctcgct cgcggcgaag ccattcagca gagcgttatc
     7861 gcaaaggttg ttgatgttgc gcggaatgcc ctctgagcag cggaagatgt aatcgaccgc
     7921 gcccggcgaa aagatttcgg cgctcgcggc gccggcaact ttcagacgcg aagtaatgta
     7981 gtgcgcggtc tcttcgacgt taggcagcgc gctgacctcg cagcgcagcg ccacgcgctg
     8041 ttttagctgg cgcagatcgg gattgtttag aactttgcag agctccggtt ggcccgtcag
     8101 aacgatctgc aaatgctttg ccgcgtcgga ttcgaaattg caaagcagcc gcacttcttc
     8161 cagcacgttc ggcgacagtc cgtgcgcttc gtcgatgatc aaaaccgtgc gcagtccgcg
     8221 ggtgtgacgc gactcgagca ccttgcccag ctcaagtaac agatcggact tggtctccca
     8281 gtcccgaagc tcgaacaacg cggcgaggtg ctgataaaac tcaggcaccg acaggcgcgg
     8341 attgaaaatg taagcgacca tcaccgtgcg atccatccgc cgcatcatcc accgcaggac
     8401 cgtcgtcttt ccggtgccga cttcgcctgt gactacgatt aggcctttgc cgctttcgac
     8461 tccatagtga agattggcca tcacttcggt gtgcgaaggc gtgaaataga tgtagcgcgg
     8521 atcgggcgtc agcgcgaatg gcatttctct cagtccgtaa tattctgcgt acatatttcc
     8581 tccactgctt tacagcagga acttttcaaa tacgtgagtc agccgcaaca cgaacgcgag
     8641 catcggcacg gtgacaaacg cagcggcgag tcccgccgcc atggcgagtg tttgacggcg
     8701 cggaatcgcg cgcgcctccg ccggcgtcaa cagttccgga attgcggcga gcacaggcag
     8761 acccgtgtag tgcttggcat cttcggcagt ctgaattgtg aacagacgcc gcagttcaga
     8821 agcaattgcc agcagcaaac ccaacacgag gccagcgcca aatcccgcgg cagtcagcat
     8881 gaagcgtttg ggcgcgaccg gatgttccgg caggttcgct gggtcgacaa cctgaatgcc
     8941 gccgctttgt tgatccttgg cggcatcagc gccgacgacg actttctgtt gctgggcgag
     9001 taagttgtca tagttcaatt tcttcgtttg atattcgcga tcgattgctt ctatgccgac
     9061 ttccgcattc ggaatcgcgt tgatgcggcc atcaagctcg gcaatttgcg cgttagtttc
     9121 gttcaagagt ttcgtctgac gctccatgtc gctgtccacc atcgtgattt gtgtcttgag
     9181 cgtaagaatg cgcggatcgc tcaactggat tagcttttgc tttcgctcct cggtgcgagt
     9241 tttccagtcg gcgatcatct gatcctgctc actcttaacc gaaacgatct gcttttgctt
     9301 ggcaatgacg tcaggatgtt tctccttgta ctgcgtcgtt agactttgca gttcggcttc
     9361 aagttctgag tgacgcctga ccagctcagc ccaggccatt gtggttttcg gatcggtggt
     9421 gttctcggcg gccagagcga tctcttgctg gtaactcttg gtgatatcgc caagctggct
     9481 gcgataagcg gcgccgagat cgcgcgcgcg tccctgttcg gcaatcagcg ccttctgttc
     9541 ttcgtgcagc gccgtcaatc gtccgaccag cgcctgcgac tgtgaaggca ggttgttgat
     9601 gttctgttgc aagtaactga gccgctgagt gtcgatcgtg tcgagttctt ccttcgcctg
     9661 gcgcacctgt tcctcgatga actgcttggc ggaggtgccg gcgttgacgg tgcctttggt
     9721 ttgctcgtcg atgtacttgc tcgcgagttc ggcggcgacc gcttgcgtag tcttcggatc
     9781 gggtccgcga taagtgatgt tgaatccgtt ggtgatttcg tttcgcgtcg tgttgacttc
     9841 cactttgatc tgcttgcgca tctgatcgat cagcaattcc atcggctctc cgcgcagacg
     9901 ttcttcgtga tagaggtcat acttttccat caacggctgc aaagagctgc gactggttac
     9961 gacctgagaa atgctggtca gttcacgcgt caatgcatct tcggtgatcg tcggaacaac
    10021 ggtcgtgggc agcgtggacg gcttgacgac gatcagcgta gccgactcgt aaatatccgg
    10081 caggcggaaa acgacgtaag cgatggcgag cccgatcgcg atcgtgggta gcaggatcag
    10141 ccacttgcgc ttgcgcgcga tgctcgcgta ttcacctagt ttgcgtggtc gaaattcaac
    10201 actcattttc gggtgctcct taaatcagcc acagaggcac ggagacacag agacaagaag
    10261 agcaacgatg ggttgcgttt ctggttgaca tttctgattg gcatttctct gtgactccgt
    10321 gactctgtgg cttagtttgt ttacaagctc gccaaagtct tccgcgcctc atcggcttcc
    10381 ggaaaactcg tcttgccact cagccgcaaa gcgctttcga tctcacggcg cgcgccggct
    10441 ttgtcgcctt tggcggccag cgccacaccg agatgaaagt gataagtcgg cgtcggcgtg
    10501 ctgttgctct ggcgcgcttc tgcttcgtca accgagacgg ctttcttcaa ttgctcggcc
    10561 gcggcgccgt acaaaccttt cttgtaatag acccagccga gcgtgtcggc gaagctgggt
    10621 acttccggat tcgattgcac cgcgccctgc gccagccgaa cggcttcgtc catgttgcct
    10681 ttgttgtaaa ccgcgtacag ccacgccaga ttgttggccg cgaagatcgc gtttccatcc
    10741 tgggccaaag ccttgcgata gttatcaaca gcggcgtcga cgttctgccg attcatttcg
    10801 agcatgccga tcaatgtgta agcagccgca ttgtctggac ggcgctcgac gattttgttg
    10861 tattccgtga tggcgcgatc ctgctgattc gtgttcacga acaacgctcc cagcgccgag
    10921 taggcagcga gatagttccc gtcgatttcc agcgcgcgac gaaactccgc ttcggcgccc
    10981 aacgcattca tttcgaatcc gtaaatctga cctttcagga agtgtaagcc ggcgttgttc
    11041 agctcggagc cgatcgcctg atcgattcgc gcatgcgcct ggtcggtgtg cttctgcgac
    11101 gcgtagatgt tgataaggcc gcgcagtgcg ttaaagttca cgccgtcaat ctggagcgcg
    11161 ttgttgtaga agttgacggc ctcgtctgct ttgttttccg ccagcgcgac gcttgcgaga
    11221 ttgacgtaca cgtcggtgct gcgcggcgcg atgtcatgcg cggcaagaaa atcctgacgt
    11281 gcagttttgg tgtcgcgcat ttgcaaagcc gccgagccat gcgcgatcag attcttggcg
    11341 cgcaactccg ccagcatctg cggcgaggtg tctttatcag gcgaagcttt cgccagacga
    11401 tcctgcaact gagttgacaa ttgcaaagcc gacttcgcat cgccaccggc gagattgatt
    11461 tgcacctgca tcaattttcc cggcagatag tccggatagt tgcgttcgag atcgttggca
    11521 aatgcgcgcg cttgatcgat ctgaccttgc cggaaacttg cttcggccat gaagaacaaa
    11581 ccagggcgcg aattcggttc ctgcctgagc acctctttca aatcttcgac ggccactttc
    11641 aggtcgttcg gctcgttgct ttgcatttca atgcgcgcgc gcaggatcag cgcctggcga
    11701 tcgtgcgcat cattcttcaa gaccgcatca acttcgttct tcgcgccggc gaaatcgccg
    11761 cgcatcagag tgatttcggc gagccgatag tggccctgcg tgtagtcggg cgatttcgcc
    11821 gcgacttctt tgtagatcgc catcgcttcg tcgagccggc cgactgaggc ataaaaatct
    11881 gccagcacgg agcggccctc tggcttgtct ttgtcgaatt cagccagggc tatgtacgct
    11941 tcttcggctt tggcgaatcg tttgttgacg agatagaagc tggcgagcac gaagcgcgct
    12001 tcgcgattgg cgggatcgac ctctacagct ttttgaaatt cagcttccgc ggcgtccgtg
    12061 cggtttgatt ggaccaggaa ctttccgtat tcgtagtgcg ccagcgctga agtagcgttg
    12121 actgaaatcg cgcgctggta aatcgactcg gcggtcacgg aatctttcgt cagaacatag
    12181 aaacgcgcca ggctcaggta cgactcaacg cgttttggat cgagttcgat cgcgcgcttg
    12241 agttcggcga aggcttccgg cttgtggtct tgcgcgaaca gcacgctccc catcaggatg
    12301 tgaccttcga tgtgattcgg atctttttgc agaacttctt tcgctaaacg ctcggcttcg
    12361 ctgaccgcgg cgggtgactg ttggccgccg gcgagatagt aattccccag ccgcgttcgc
    12421 acgtcgaggt tctttgcatc cagctcgacg acttgcttca tttcctcgaa cgcttcctga
    12481 tagcgctgaa gaccttcgta ggcattcgcc aatccccagt gcgcgtccgc cagacggtcg
    12541 tcgatttgca gcgcgctgcg aaactcaagc gacgcttcct gaaacttttt gtctttcagc
    12601 aaggcctgcc cgcgggcgac gtgttgggct ttggcttttt ccggcgtggt gcatgcgccg
    12661 atgatcaagg cgcaggctgt caggataaga agcagaaaaa gggcgtggga ctttcggcgg
    12721 cactctcgat ttttcattac tgcgggtctc catcacggct cgaccttccc gggcaactgc
    12781 gaaggtccgc cgctattttt gggcgatttc ttcggcaacg ggcaaggctg ctcaaaggtc
    12841 gctttcagcg aggtgaaaaa agtgtcaaaa aacgtcactc gcgcgcactg gcgagttaga
    12901 aataagaaag agataatccg tagtgtttcc caggaaattg attggagttt gttgtttgaa
    12961 agtgagcatt tcccctcccc tatggggagg ggattaaggg gtagggtctc tgcggacgca
    13021 taagaccctc tcccccaacc cctcccaaaa gggagaggga gcggctcgct aaaacatcac
    13081 ggtggctaat tcggaacgaa agccggtaat tgtgaggctg cttgcgaggc gagttcgact
    13141 gcggcttttt gagcctcctc ttcggaattt ccgagcggca ccatgaggcg caccatcgcc
    13201 ccatcagagc gacgccaacg cacgctgtcc atcacggtgt aaatctttcc ccagtattcg
    13261 ctggcggtgg cgcgaccgcg tccctggtac caatagacca tcaaggctcg gtccttgccg
    13321 ttttcgacga cgtagcgatt ggcttcgaac tgtgcgccgc catccgcggg cgtgatcgtg
    13381 atccgcgcgc cgtcactcat cgtccagccc gagccgggca aacaattcaa cgggctgtga
    13441 taggtcgcgc cgttgcgttg cgttgcgtag taaccgacat agaacgaagc cacgcggccg
    13501 tccggcgatt cgaagttgcg cgagatgtaa tcatcggcgc gcaaaacttt ttctgtttct
    13561 tcatcgaagc gaaagtcgcc acccacctga cgccacgcgc caagttgcgc gggaaaatct
    13621 tttaatgggc gacgcgacac gcgcgcttcg ccggcgcgct cccagacgtt gatgattcca
    13681 ccgccgagca gaagcgtggc cagcagaatc cagaaacgaa gtgtgttggt tctgatatcg
    13741 atcatcacca gacagtaagc tccacgcgct atctagtccg cgaagcggac gaacggaaat
    13801 agcccagcag ttcactgctg ggaaggctga catctgaatg gatgcaagcc cgtgaaacgg
    13861 gcggcagaag accgtttacg atctttgcgc gtttctgtga aagctcatca ggcatctgat
    13921 ttctgtcgtc cgcttcgcgg acttacctgc ctatttgcgt gcgtgtcccc accgataaat
    13981 cggtgggcta ttttcgatcg tccgctttgc ggactcttca gcaacagctg ctgtgcgacc
    14041 aggttctttc tggcttaatc gtccaacgcg atcaaggagc cagccggttg cgaacaacag
    14101 cgctgccgcc gcgacataga tcacccaacc cgagaatgaa tgaaagaaac catcggcgac
    14161 gcgcgtcccg tagtagtgcg ccagcacacc agtgccgctg acgcgcaaaa cgttcgtcag
    14221 aatcgcgatg ggaacggccg cgacgatcag aatcaccgcg cgccagatgg ccaagtgtcg
    14281 cggacgtgat ttcggtctcg tgaaatacgc ataaacgacg gcgagcgtca ccagcgtcat
    14341 caacgaacgt atgccgctgc acgcttcgac gacggcaagt ttctttggca cgctcgagcc
    14401 aagcggcatt agttcgatca cattgccttg tctcagtact ggaatattga agaatgacat
    14461 cgccccgaca gcacagcgcg aagcgaaaag ctgcaacgga aaagcgatct tgttaaaaac
    14521 aatttgtgga atcggaatgg agagcagcat caaagacaaa ggcaccgcgg ccagacgcag
    14581 cacgcgaaat ccgctgaaat agattgcgac gctcaccaac atcagcacga gggagatgcg
    14641 ctggacgaac aactccgcgc cggccgtccc ggcccacaac gcgagcaaag aaacgccaac
    14701 gccgatcgcg ccccacaaaa gcgcgggtcg ttctgcttct tctctaaatc gctttcgctc
    14761 ccgccacagg atgtaaccaa tcacgaacgg aatcagcagg ccatgggaat agttctcgtc
    14821 gctccaccaa tcgcggccca gctttacgag cacggtgaaa tacacaaacg ccagagctac
    14881 ggcgatagca aatggttggt agaatttgcg gggaatagcg acactcatct tggtcattga
    14941 tgctttcgct gccgaggggc aatctcggct aactaagcgc ttctggttgc gggacaatca
    15001 aacacttccg gtcccaccag aacaaataaa cggcgaaaat gctaggtatt cctgagtaat
    15061 gagaggatgt ttttacgcac catgacgctt gtctgcgcag gtgaggtcgc ttcgacttct
    15121 gaaatgccgt acgaggttat caactgcgcg acgttctttc gcagatcgaa ctttgccgac
    15181 acggtctcgc gtccggcctg gcccattcgc gttcgcaatt caggatcggc cagcaaagtc
    15241 agaatacgat cgctcatcgc ttccgcatca ctgcggccga ccagatagcc agtcacgccg
    15301 tcagtaacca actcaggtat gccgccgacg cgcgtagcga gga
//
LOCUS       DASZZE010000168         2208 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_21915, whole genome shotgun sequence.
ACCESSION   DASZZE010000168 DASZZE010000000
VERSION     DASZZE010000168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2208)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2208)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2208
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21915"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..408
                     /locus_tag="VHD88_03410"
     CDS             <1..408
                     /locus_tag="VHD88_03410"
                     /inference="COORDINATES: protein motif:HMM:NF013731.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HVS20866.1"
                     /translation="FFCIDSDRVTNRVLLDEGKLKQIEGDGSIELHGEHLPRLRLRKL
                     LAQTDVVDPKGPCGLIVWQAADHRAVLAGRRDRFALVVDAITGQQETLVRSLGRHAAR
                     WRGVSGAAELWDGKVALVLDLEQLIEAQVTPKR"
     gene            629..1204
                     /locus_tag="VHD88_03415"
     CDS             629..1204
                     /locus_tag="VHD88_03415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20867.1"
                     /translation="MTHTFLLLLLATYPSVIAQDHTYPRDIRGYKVERTVVEVKKSRN
                     TQANSESDVDALITFGAPQLARITPLGITFEVPIIVAPVKQSGRVDFLLFEDIIVNGT
                     SVDIDEYRRAFDLPNKRELTLREPLRFYIYLPSAVLAAVDAWRNSKETWPVTGRVYVF
                     GKFKKGLFSFKRCVPVELNLTMRNPLQNREQ"
     gene            complement(1393..>2208)
                     /locus_tag="VHD88_03420"
     CDS             complement(1393..>2208)
                     /locus_tag="VHD88_03420"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HVS20868.1"
                     /translation="GRISRYGAMGLSWTMDKVGPICRGVEDCAAALDALYGPDHRDMT
                     VGDAPFNWSADVPLGSLRVAYLKTEFEPTPFPGMTDQQKQQQELRKVVYKEALDALEK
                     TGVKMTAIELPKFPTNNLRYILTAEAATAFDDITRDGRVNQLSGQAAGDWPNSFRTSR
                     FIPAVEYLRAQRARTLLMREMDKFMSQWDVFVSPAPGSASLIITNLTGHPAVCVPCGF
                     IAVPNAKEKRSDNLPQAIMFTGGLYDEAAPLRVALAFEEATKWHTMHPKVDWA"
BASE COUNT          474 a          643 c          618 g          473 t
ORIGIN      
        1 ttcttctgca ttgactccga ccgcgtcact aatcgtgttc tgctggacga aggcaagctc
       61 aaacaaattg aaggcgatgg ttcgatcgaa ctgcacggag aacatttacc gcggctgcgt
      121 ctgcgcaagt tgctggcgca aactgacgtc gtcgatccga aagggccgtg cggtctaatc
      181 gtctggcaag ccgccgatca tcgagctgta ctggcaggga gacgagatcg gttcgcgctg
      241 gtcgtggacg ccatcacggg acaacaggag acattggtgc gcagtctggg acgccacgcc
      301 gcacgctggc ggggcgtgtc cggcgcagcc gagttgtggg acggcaaagt ggcgctcgtg
      361 cttgaccttg aacaactgat cgaagcgcaa gtcaccccga agaggtaaag caagtagcca
      421 agggtaagcg cgaagcgcgc cacccatgga tctcgttatg aagaaaacca tgcgccctga
      481 aggggcgcag agaaacagcc atgaaacatc cgaacgcgac tcgcaatttc tgcgcacccc
      541 tgcggggtgc gaacattcat ctgcttctgc taccaggggt cgcgcgctaa cgcgcttgcc
      601 cctggctact ttctttaact ccttcggagt gactcacact tttctgctcc ttctcctcgc
      661 tacttacccg agcgtcatcg cccaagacca cacttatcca agggacattc gcggctacaa
      721 agttgagcgc accgtcgtcg aagtcaagaa gtcgcgcaac actcaagcaa attccgagtc
      781 cgatgttgac gcgctgatca cgttcggcgc accgcaactc gcgcgcatca cgccgctggg
      841 aatcactttt gaagttccga tcatcgtcgc cccggtcaag caaagcgggc gcgtcgactt
      901 tctgcttttc gaagacataa tcgttaacgg cacctccgtt gacattgacg agtatcgtcg
      961 cgctttcgat ctgccaaaca agcgggagct gactttgcgc gagccgcttc gcttttacat
     1021 ctatctcccc agcgccgtgc tggcggcagt cgatgcgtgg cggaactcga aggagacgtg
     1081 gccagtgacg gggcgcgttt acgtctttgg gaagttcaag aaaggcttgt tcagtttcaa
     1141 gcgctgcgtg cccgtggaac tgaacctcac gatgcggaat ccactgcaga accgcgagca
     1201 gtagcgagcg ggtggttgct catcgtggtc aagattcgcg aatctcactt caccagcgaa
     1261 taaaccttcg agatgtccgt gaagtaaacc tgtttcgcgt ccaccgcgag gaatttagtc
     1321 caagcagccg cgccttgatc cagaggcgtt cggtggtgat ttagtcacgc ggattcctcg
     1381 attgagatca cattaagccc aatcaacttt cgggtgcatc gtgtgccact tcgtcgcctc
     1441 ctcgaacgcc agcgcgacgc gcagcggcgc tgcttcgtcg tagagcccgc cagtgaacat
     1501 gatcgcctgt ggcaagttgt ccgatcgttt ttctttagcg ttaggaacag cgatgaaacc
     1561 gcagggaacg caaactgcgg gatgaccggt aaggtttgtg atgatcaagc tcgcgctccc
     1621 aggcgcgggt gatacgaaga catcccactg cgacatgaac ttgtccatct cgcgcatcag
     1681 cagcgtgcgt gcgcgttgcg cgcgcagata ctcaaccgcc gggataaagc gcgaggttct
     1741 gaatgaattc ggccaatcgc cggcggcttg tccggaaagc tgattgacgc ggccatcgcg
     1801 cgtgatgtcg tcaaacgccg ttgccgcctc cgccgtcaga atgtagcgca agttgttcgt
     1861 cggaaacttt ggcagttcga tcgccgtcat cttcacgccg gttttttcca atgcgtccag
     1921 agcttctttg tacacgacct tgcgtagctc ttgttgctgc ttttgctgat cggtcatgcc
     1981 cgggaaagga gtcggttcga attcagtctt caagtaagca acgcgcaagc tgcccagagg
     2041 aacatcggct gaccaattaa agggcgcatc tccgacagtc atatcacggt ggtctggacc
     2101 gtagagagca tcgagcgccg cggcgcaatc ttccactcct cgacagattg gcccgacctt
     2161 atccatcgtc cagctcaaac ccatcgctcc ataacgactg atgcgacc
//
LOCUS       DASZZE010000169         2728 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_21917, whole genome shotgun sequence.
ACCESSION   DASZZE010000169 DASZZE010000000
VERSION     DASZZE010000169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2728)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2728)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2728
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21917"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(383..1237)
                     /locus_tag="VHD88_03425"
     CDS             complement(383..1237)
                     /locus_tag="VHD88_03425"
                     /inference="COORDINATES: protein motif:HMM:NF017532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HVS20869.1"
                     /translation="MRLSTEQILQYERDGFLVLANFVDKSVCNSLRARAEELVRDFDP
                     QGVVSIFSTHEQTRTSDDYFLESGDKIRFFFEENAFLPDGTLRQSKERSINKIGHALH
                     DLDPIFDGFSRTEEIKQLVSDLGIADPLLLQSMYIFKQPRIGGEVTCHQDATFLFTEP
                     LRMVGLWFALEDATIDNGCLWVIPGRHKLGLKSRFIRAEGGGTRFEVFDNTPWPEEKL
                     QPLEVKKGTLIVLHGLLPHLSRENQSSRSRHAYTLHVIDAASRYPDENWLRRSAGMCL
                     RGFESYPE"
     gene            1487..>2728
                     /locus_tag="VHD88_03430"
     CDS             1487..>2728
                     /locus_tag="VHD88_03430"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HVS20870.1"
                     /translation="MPDQIETGIVAESVSQPPAFRRLLRIFAPAAAIPIELHDPVIVS
                     REYRYWQKRVLLTSIIGYATFYFVRKNLSIAMPVMQSSLGFKKTQLGLFLTLHGLLYG
                     VSKFANGFFGDRANARAFMAFGLGASALMNVLFGFNSAVVTLGLIWMANGWFQGMGFP
                     PCARLLAHWFPPKQLASRMSIWNISHSIGGGVIVILCGYLVVISWRLAFFVPAAIAFV
                     CVIFIWFTLPDTPPSVGLPEVEGTEQHSQQHESRADFRQFIIKQVFLNKYIWIVSMAN
                     FFVYIIRYAVLDWGPTLLTESKHVVITHAGWMVAAFEFCGALGAMFGGWITDRFLGGR
                     AVRACVVYMALAGVALFVFWKVPFHSELLITAVLGAAGFFVYGPQCLLAVTAANLATK
                     RAAATAIGLTSIFGYASTVLSG"
BASE COUNT          558 a          770 c          748 g          652 t
ORIGIN      
        1 ttgtcttcag caacttcggc acgaccggca ccgtttccta tcacgtgaac gcgaactgcg
       61 ggggcgtgcc gcgcatgggg accatatcaa ttgtctccca gcccgtcctt ccttccactg
      121 gttcgacaga aaaggttttc acgattaccc aggacggcgg tccatgcccg ccgtgaaccg
      181 cccaaggaac aacgggaggt tcatctctca gggcttgacc caaagcagcc gctcgcggtc
      241 atgcgaatct ccaggacccg gccaggtcgc ggaacaactt attttttggc cataatcgcc
      301 aatagccgca gagcgttgag tagggtataa ctctatttga tggttgccgc ttaacgccct
      361 tcggaaataa aggatttacg ggtcattcag ggtaggactc aaatcctcgt aaacacatcc
      421 cagccgatcg ccgcaaccag ttttcatcag gatatcggga agccgcatca atgacgtgca
      481 gcgtgtaagc gtgccgcgaa cgcgacgatt ggttttcgcg actcagatgc gggagcaagc
      541 cgtgcagtac gatcagagtt cccttcttga cttccaacgg ctgcaacttc tcttccggcc
      601 atggcgtgtt gtcgaatact tcgaaacgag tgccgccgcc ttcagcgcga ataaagcgtg
      661 acttcaatcc gagcttgtgt ctgccgggaa tcacccaaag gcatccgtta tcaatcgtcg
      721 cgtcttccaa cgcgaaccaa agtccaacca tgcgcagcgg ctccgtgaaa agaaacgtcg
      781 cgtcctgatg acaggtgact tcgccaccaa tgcgtggctg tttgaagatg tacattgact
      841 gcaagagtaa cgggtcagcg atgcccagat ccgaaacgag ttgtttgatt tcttccgtgc
      901 gcgaaaaccc atcaaagata ggatcgagat cgtgaagcgc atgtccgatt ttgttgattg
      961 atcgttcctt gctctgtcgc agagttccgt caggcagaaa agcattctct tcgaagaaga
     1021 aacgaatctt gtcgcctgac tcaagaaagt aatcgtcgct ggtgcgcgtc tgctcgtgtg
     1081 tcgagaaaat tgaaacaacg ccctgcggat cgaagtcgcg cactagttct tccgcccgag
     1141 cgcgcaaact gttacagacg ctcttgtcaa cgaagtttgc gagcaccagg aagccgtcgc
     1201 gctcgtattg aaggatttgt tcggtgctaa gacgcatgtg aaggaagcat tcttcgatct
     1261 tgagaaattt taatcaagcg aacaaccagt ctgcctcagc cgccgtattc gagtgggacg
     1321 aaacgttttc ctctgcgcaa cctctgcgtt ctctgcgtct ctgcggtgaa cacactggga
     1381 agaacgctca ccgccgagac gcagaggacg ctgagacggc gcagagaaag ctttccgttg
     1441 cgccgagcgc gcgataaact cgctgggctt ccggaggcaa tccagcttgc ccgatcaaat
     1501 cgaaaccggc atcgtcgccg agtcagtctc tcaaccgccg gccttccggc gtctgctcag
     1561 gatttttgcg cccgccgccg caatcccgat tgaattacac gatcccgtca tagtctccag
     1621 agagtatcgc tactggcaga agcgcgtgct gctgacttcg atcatcggct acgcgacgtt
     1681 ttatttcgtt cgcaagaacc tcagtatcgc gatgccggtg atgcagagca gtctgggctt
     1741 caagaagaca cagttgggct tgttcctcac gttgcacgga ttgctctacg gcgtatcgaa
     1801 gttcgcgaac gggtttttcg gcgatcgcgc gaacgctcgc gcattcatgg catttggtct
     1861 cggcgcttcg gcgttgatga atgtgctctt cggtttcaac tcagccgtag taacactggg
     1921 tctgatctgg atggccaacg gctggtttca gggcatgggc tttccgccgt gcgcgcgtct
     1981 gttggcgcac tggttcccgc caaagcagct tgcaagcaga atgtcgatct ggaatatttc
     2041 gcactcgatc ggcggcggcg tgatcgtcat tctctgcggt tatctggttg tgatcagttg
     2101 gcggctcgcc ttcttcgtcc cggctgcgat cgccttcgtt tgcgtcatct tcatctggtt
     2161 tacgcttccc gacacgccac cgtccgtcgg cctacctgaa gtagaaggca cagagcaaca
     2221 ttctcagcag cacgaatcgc gcgccgattt caggcagttc attatcaagc aagtttttct
     2281 caacaaatac atttggatcg tttcgatggc gaactttttc gtttacatca ttcgctacgc
     2341 cgtgctcgat tggggcccga cgcttttgac tgagtcgaag cacgtcgtga tcactcacgc
     2401 aggttggatg gtcgccgcgt tcgagttctg cggagcgttg ggcgcgatgt tcggcggctg
     2461 gattacggat cgattcctcg gcggacgcgc cgtgcgcgct tgtgtcgttt acatggcgct
     2521 ggcgggcgtc gcgctcttcg tgttttggaa agttcccttc cactctgaat tgctgattac
     2581 cgcagtgctg ggcgcggcgg gattcttcgt ctatggcccg caatgcttgc ttgcagtgac
     2641 cgcggcaaac ctcgcgacca agcgcgccgc cgcaaccgcg atcggattga cgagcatctt
     2701 cggctacgcg agcacggtgc tttccggt
//
LOCUS       DASZZE010000170         6181 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_119139, whole genome shotgun sequence.
ACCESSION   DASZZE010000170 DASZZE010000000
VERSION     DASZZE010000170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6181)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6181)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6181
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119139"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1042
                     /locus_tag="VHD88_03435"
     CDS             <1..1042
                     /locus_tag="VHD88_03435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20871.1"
                     /translation="IYVGGSTFVNFAPPVEIENISPSPLVRAAKMRTISSPVDCAFSD
                     FDYSLRVTNNQDVAFEGQIVVGPSSGPKVGSSVTVAAHGTANVTLIVPGCNGGPPKSD
                     PMTFTVLAKNGQPVARLDIPVVGADAHVAPNLRVGYVRGFDYSLPNALNALGVESKEI
                     TVDEVKTTDLSKYTSIIVDNRVYESQPELIAANQKLLDYANAGGTLIVFYHKSDEWNP
                     DQRRNRPQLAPYKLVLGDERITDETAPITFIEPQHPLLSFPNKMGQQDFKDWIQERGL
                     YYPREWDAQFHALLQSNDPGEAPLKGGLLVADYGRGHYIYTSMVWYRQLRAGVPGAYR
                     MLANMISYGRAK"
     gene            complement(1238..1741)
                     /locus_tag="VHD88_03440"
     CDS             complement(1238..1741)
                     /locus_tag="VHD88_03440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20872.1"
                     /translation="MFRVRSSFKTQLEIKAPLNRVRDFFADLRNFTDFLGGVESIRRE
                     PGGVARWTIATDTPVGRVCMSLPVRETSPHADTIEWSPALNETQNLLRYSLRFEEQKG
                     ATLAHISQQVELRRKRAWDLHPGVGLMGEARISAALQRRINEAIENFLARVKEKLEAG
                     SADILSA"
     gene            complement(2111..3535)
                     /gene="glnA"
                     /locus_tag="VHD88_03445"
     CDS             complement(2111..3535)
                     /gene="glnA"
                     /locus_tag="VHD88_03445"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HVS20873.1"
                     /translation="MNAKTVLKYASDQGAKFVSLRFTDLPGSWQHLTFPIGELNAGSF
                     EDGFGFDGSSIRGWAAIHESDMLLVPDPYRFWMDPFAHAPTLCLVANAVEPITRQGYA
                     FDPRIVAVRAESYLKKTGIADVANFGPEAEFFVFDSAQFYNEQHGAGYSIDSDEGHWN
                     SGRDHNESQGTNLGYRIRPKEGYVPTPPTDTLSDIRSEISLTLGECGVNVECHHHEVA
                     TAGQCEIDFRYSTLLGTADNLQIFKYVVKNTAHRHGKTATFMPKPLYGDNGSGMHCHQ
                     SLWKGNKPLFAGKGYAGLSDLALNYIAGLLKHAPAIVAFAAPTTNSYKRLVPGFEAPV
                     NLAYSARNRSAAIRIPMFSTNPKLKRLEFRPPDPSCNPYLAFAAMVMAGIDGIQNKLD
                     PGPPLDKDIYEMSAKDLKKVPSLPGSLDESLEALERDHDFLLKGGVFTPELIERWIGY
                     KRDREIQPLRMRPHPLEFSMYYDV"
     gene            3970..5907
                     /gene="speA"
                     /locus_tag="VHD88_03450"
     CDS             3970..5907
                     /gene="speA"
                     /locus_tag="VHD88_03450"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: protein motif:HMM:NF003763.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008792 - arginine decarboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006527 - arginine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HVS20874.1"
                     /translation="MTTAIEQTIETYGIENWGAGYFDVNRKGNLIVRPAEGDPRSADL
                     KEIIEDLAGRGITAPVLLRFPQLVAAQVRKLQRAFSKSIREFDYQGAHMCVYPMKVNQ
                     QRSVVEEYLREGSRYDFGLEAGSKAELYAALALEQSPDSLLVLNGFKDEEFIEMAFAG
                     AKSGKRVVIVVEKLSELDHILRITDQHKGNMPIIGMRVKLYSKGSGRWEKSGGEAAKF
                     GLTTTEVLEVINRLKEGDRIDMLRLLHFHIGSQLTDIKRIKNAMKEAARVYAKVRQMK
                     VPIELLDVGGGMAVDYDGSKTAFDSSANYNAQEFANDVIYTIKQVCDDENVPHPTIIQ
                     ESGRFLSAYHAILVTNVLEEIETVVEPITPLEIEEDDPQVVIELGDLRETITIKNYRE
                     YYHDALEHREELFTLFSLGLISLEDRAKGEVLFWDVCERADRYAQQSKYVPEEFGDLR
                     RLMCVKYLANFSVFRSVPDHWALDQLFPIVPIQSLNKPPTEFATLCDITCDSDGVVDK
                     FVDLHDVKHVLELHKLDPDEPYYLAFMLVGAYQEVMGNNHNLFGAPNEAQIHIDEEGY
                     LIKKVIRGTTVGEAVGRARYDRGLLHDGFRRQVTQRIKDGELTEAEGAELVNFYESRF
                     DAYTYVSVNGNRMQGRRRHDY"
     gene            5965..>6181
                     /locus_tag="VHD88_03455"
     CDS             5965..>6181
                     /locus_tag="VHD88_03455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20875.1"
                     /translation="MVTQRKPKPSKYLTIPTRPVQVDRDRSVAGLLEKMEGTGFGGRQ
                     MAEAHRIWLDMLGDNTTITVAASGALIP"
BASE COUNT         1482 a         1692 c         1703 g         1304 t
ORIGIN      
        1 catttacgtt ggaggctcaa cgtttgtcaa tttcgcgccg cccgttgaaa ttgaaaacat
       61 cagtccgtca ccactcgtca gggctgccaa gatgcgcacg atatcgtcac cggttgattg
      121 cgcctttagc gacttcgatt acagcttgcg agtgactaac aatcaagacg tcgcattcga
      181 agggcaaata gtcgttgggc catcgtccgg accaaaggtc ggctcaagcg tgacggttgc
      241 tgcgcatggc acggcgaacg tcactttgat tgttccagga tgtaacggtg gcccgccgaa
      301 atccgatccc atgactttta ccgtgttggc aaagaacggc caaccagttg cgcggctcga
      361 cattccggtt gttggggctg atgcgcatgt cgcacccaat ctccgcgtcg gctacgtccg
      421 cggcttcgat tacagtctac cgaacgcact caacgcgctc ggtgtcgaat cgaaggagat
      481 aactgttgac gaagtgaaaa cgacggactt gtcaaagtac acgtcgatca tcgtcgacaa
      541 tcgcgtctat gaatcacagc cagagttgat cgccgcgaat cagaagctgc tggattacgc
      601 gaacgctggg ggcacgctga tcgtcttcta tcacaaatcc gacgaatgga atcccgatca
      661 gcgacggaat cgtccgcagc tcgcgcctta caaactagtc ctcggcgatg agcgcatcac
      721 ggacgagacc gcgccgataa ctttcatcga gccgcagcat ccgctgctta gcttccccaa
      781 caaaatgggc cagcaagact tcaaagattg gattcaggaa cgcgggcttt actatccgag
      841 agaatgggac gcgcagtttc acgcactgct tcaatcaaac gaccctggcg aagcgccgtt
      901 aaagggcgga ctgctcgtgg cggattacgg gcgcggccat tacatctaca ccagcatggt
      961 ttggtatcgg cagttgcgcg cgggcgtgcc cggcgcgtac cgcatgctgg cgaatatgat
     1021 tagttatgga cgcgcgaagt aggttggaga cttcttacgg cttcgccgtc tgaggtgcgg
     1081 aaaccctccg gctttccgtc ggccaacctt attacgtatc tcatcgcgac taggctgagc
     1141 cttgtcgcga tgagatgttt taacaaaagc atccgatcgg taaggcagag ccttaccgca
     1201 catcgggcgg cagagccgca agacttcgcg tccgcgctca tgcggacagg atgtccgcgc
     1261 tcccggcttc cagtttctct ttcactcgcg ccagaaaatt ttcaatcgct tcgttgatgc
     1321 ggcgctgcaa ggcggcgcta atccgcgctt cacccatcaa gcccacgccg ggatgtaaat
     1381 cccacgcacg tttgcgacga agctcgactt gctgcgagat gtgcgcgagc gttgcgcctt
     1441 tttgctcctc aaacctcagc gagtagcgca gaagattctg agtttcgttc agcgcgggcg
     1501 accactcgat cgtgtcggcg tgcggagatg tctctcgcac cggaagggac atgcacacac
     1561 gaccgactgg agtatcagtc gcgatcgtcc aacgcgccac gccgccgggt tcgcgccgaa
     1621 tgctctcgac gccaccgagg aagtccgtga agttacggag atcggcgaag aaatcgcgca
     1681 cccgattcag gggcgctttg atctcaagct gagttttgaa ggaagatcta acgcgaaaca
     1741 tttcgaagcc agaattcaga agtcagaaat cagaagcaaa gcaaatgaac atttcctaaa
     1801 tcttgacaac tagtgtcgag tgtcatcacg catcacgcgt cacgccgaaa gtctcttcat
     1861 accaacaccg cgtacaccag cgatgcctgg ctttgcgctc gtctaaagaa taatcggctg
     1921 aagccggtag ccgtcgcacc agctcgcgct cttcatcgct cagcgcatgc caatttaaca
     1981 agcgcccttc gccacaacga gggcatctgt cttcactctg cattgttgac tcaaaaaaag
     2041 attttcacaa aaagatgggc agcaagtcta gtactgctgc ccaaaacatt cgtcaaaccc
     2101 gcgatcaaga ctagacgtcg tagtacatcg aaaactcaag cggatgtgga cgcatccgca
     2161 acggctgaat ctcgcggtca cgcttgtagc cgatccagcg ctcgatcaat tccggcgtga
     2221 acacgccgcc ctttagaagg aagtcgtgat ctctttccag agcttccagc gattcatcga
     2281 gcgagcccgg caggctcggc actttcttta aatccttcgc ggacatttcg taaatgtctt
     2341 tgtcgagcgg cgggcccgga tcgagcttgt tctgaatgcc gtcgattccc gccatcacca
     2401 tcgccgcaaa tgccagataa ggattgcacg atggatcggg cggacgaaac tcaagtcgct
     2461 tcagtttcgg attcgtggag aacatcggaa tgcgaatcgc cgccgaacga ttgcgcgctg
     2521 aatacgcaag attcaccggc gcttcaaaac cgggaaccag ccgcttgtag ctgttagttg
     2581 tcggcgcggc aaaagcaaca atcgccggcg cgtgtttcag caatccggca atgtaattaa
     2641 gcgcgagatc ggaaagacca gcgtaacctt tgccggcgaa taacggtttg ttgcctttcc
     2701 aaagggactg atgacagtgc atgcccgagc cgttgtcgcc gtacaaaggc tttggcatga
     2761 acgtcgccgt cttgccgtgg cggtgcgcgg tgttcttgac gacgtatttg aaaatttgca
     2821 aattgtccgc agtgcctagc agcgttgagt aacgaaaatc aatctcacac tggcctgcgg
     2881 tggcgacttc atgatgatgg cactcgacat ttacgccgca ctcgccaagc gtcagcgaga
     2941 tctctgagcg aatatcgctg agagtgtccg tcggcggagt gggaacgtaa ccttccttcg
     3001 gacgaattcg ataaccaagg tttgtgcctt gcgactcgtt atgatcgcgg ccactattcc
     3061 agtggccctc gtctgagtcg attgaatagc cggcgccgtg ctgctcgtta tagaactggg
     3121 cgctatcgaa aacaaagaac tcggcttcgg gaccaaagtt ggccacgtcg gcaatgccag
     3181 tcttcttcaa ataactttcg gcgcgcacgg ctacgatgcg cggatcgaag gcgtaaccct
     3241 ggcgcgtgat cggctcgacg gcgttggcaa ccagacagag cgtcggcgcg tgcgcaaacg
     3301 gatccatcca gaagcgatac ggatccggaa ccagcagcat gtctgattcg tgaattgcgg
     3361 cccagccgcg aatcgacgag ccgtcaaagc caaagccgtc ttcaaacgaa ccggcattga
     3421 gttcgccgat cggaaatgtc aggtgctgcc atgagccggg caggtcggtg aagcggaggg
     3481 aaacaaactt tgcgccctgg tcagaggcgt acttcaacac agttttagcg ttcatctgga
     3541 tctcccgtcg tgaaaattgg agtgtcgagg ttgctcttcg ccctgagtga actttggcga
     3601 agtgttatgg agaactaaac agtctgcgga gcgcgaaaaa gtcatcaaac ccgcgcgtct
     3661 aaaaacttcg cattataccg acgtagaatc aggtgtcaag gaatttccct caattctcct
     3721 tcaaccaagg ttgttatcgc gttgaatctc aaaaacatcg caaaactaag ttgttattag
     3781 cagcaaactt aaggccgatg tgggccaaga gcacctccga aaaaagttat agaccgacct
     3841 cgcgttttct gttaaattct gccgttaagg tttcacccca agaatatccg cgattcggca
     3901 gtgagcagcc acggagccgt gtgccgtggc cgccttagct ttcgagacgg caagccagga
     3961 gaccgctatt tgaccaccgc gatcgaacag acaatagaaa cctacgggat cgagaactgg
     4021 ggcgcgggct acttcgacgt aaatcggaag ggtaacctga tcgtgcgccc ggccgaagga
     4081 gatccgcgct cggctgacct gaaagagatt atcgaagatc tggcgggccg cggaatcact
     4141 gcgcctgtgc tgcttcgctt tccgcagctc gtagccgcgc aggtgcgcaa gctacagcgc
     4201 gcgttcagca agtcgatccg cgaattcgat tatcagggcg cgcacatgtg cgtctatccg
     4261 atgaaggtca accagcagcg cagcgtggtg gaagaatatc tgcgcgaagg atcgcgatac
     4321 gactttggtt tggaagcagg ttcgaaagcc gaactctatg cggcactcgc gctcgagcaa
     4381 tcgcccgaca gcttgttggt gctgaacggc ttcaaagacg aagagttcat cgagatggct
     4441 ttcgccggcg caaagtcagg caagcgcgtc gtcatcgtcg tcgagaaact gagcgaactc
     4501 gatcacatcc tgcgcatcac cgaccagcac aaaggtaaca tgcccatcat cgggatgcgc
     4561 gtgaagctct attcaaaagg ttcaggccgc tgggaaaagt cgggcggcga agcggcaaaa
     4621 ttcggcttga cgactaccga ggtgctggag gtgatcaatc gtttgaagga aggcgatcgc
     4681 atcgacatgc tgcgattgct tcacttccac atcggttcgc aattgaccga catcaagcgc
     4741 atcaagaatg cgatgaagga agcggcgcgc gtttatgcga aagtgcgcca aatgaaagtg
     4801 ccgatcgagc tgctcgatgt tggtggcgga atggcggttg actacgacgg atcaaaaacc
     4861 gcgtttgatt catcggcaaa ttacaacgcg caggaatttg ccaatgacgt catttacact
     4921 atcaagcaag tctgcgacga cgaaaacgtg ccgcatccga cgatcatcca ggaatcaggc
     4981 cgcttccttt cggcttatca cgcgattctg gtgacgaacg tgctggaaga aatcgaaaca
     5041 gtcgtcgagc ccatcacgcc gctcgaaatc gaagaggacg atccgcaggt cgtgatcgaa
     5101 cttggcgatc tgcgcgagac gatcacgatc aagaactatc gcgagtacta tcacgacgcg
     5161 ctcgaacacc gcgaagagct gttcacgctc tttagtctcg gtctgatctc tctggaagat
     5221 cgcgccaagg gcgaagtgct tttctgggac gtttgcgaac gtgccgatcg ttacgcgcaa
     5281 cagtcaaagt acgttccgga agaatttggc gatctgcgaa ggctgatgtg cgtaaagtat
     5341 ctggcgaact tctctgtgtt tcgatccgtg cccgatcact gggcgctcga tcagttgttt
     5401 cccatcgtgc cgattcaatc actgaacaaa ccgccgacgg aatttgccac gctctgcgac
     5461 atcacgtgcg attcggacgg agtcgttgac aaattcgttg accttcacga cgtaaagcac
     5521 gtgcttgagt tgcacaagct cgacccggac gagccttact acctggcgtt catgctggtt
     5581 ggcgcttatc aggaagtgat gggaaacaat cacaatcttt tcggcgcgcc caatgaagcg
     5641 cagattcaca tcgacgaaga aggctatctg atcaagaaag tgattcgcgg cacaaccgtg
     5701 ggcgaggcag tgggacgtgc ccgttacgac cgtggcctgt tgcacgatgg atttcgacga
     5761 caggtgacgc agcgaatcaa agacggcgag ctgactgaag ccgaaggcgc ggaactggtc
     5821 aacttttacg agtcgcgctt cgacgcctac acgtacgtgt cagttaatgg taaccgcatg
     5881 cagggtcgcc gtcgtcatga ttattgaaga ctttccgaca aacctggatt cctccgacac
     5941 tttgaaagag gttagaacga gcttatggtc acacagcgca aaccaaaacc tagcaaatat
     6001 ctgacgattc caactcgccc cgtccaagtc gatcgcgacc gttcggtggc cgggttgttg
     6061 gaaaaaatgg aaggcaccgg cttcggcggc cgccaaatgg ccgaagcgca tcgaatctgg
     6121 ctggacatgc tcggcgacaa cacgacgatc acagtcgcgg cgtcgggtgc gctgatcccc
     6181 g
//
LOCUS       DASZZE010000171         1568 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_87768, whole genome shotgun sequence.
ACCESSION   DASZZE010000171 DASZZE010000000
VERSION     DASZZE010000171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1568)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1568)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1568
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87768"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..628
                     /gene="rho"
                     /locus_tag="VHD88_03460"
     CDS             <1..628
                     /gene="rho"
                     /locus_tag="VHD88_03460"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF006886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008186 - ATP-dependent activity, acting
                     on RNA [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HVS20876.1"
                     /translation="ERPEEVTDMQRSVQGEVISSTFDEPPTRHVQVADMVIEKAKRLV
                     EHKRDVVILLDSITRLARAHNAVVPPSGKILSGGIDSNALQRPKRFFGAARNIEEGGS
                     LTIIATALIDTGSRMDDVIFEEFKGTGNSEIHLDRRLSDKRLFPAIDLARSGTRKEEL
                     LLSKEDLARVWVMRRVLNPLSPVEQMEVVLERLEKSKSNAEFLASMQS"
     gene            720..>1568
                     /locus_tag="VHD88_03465"
     CDS             720..>1568
                     /locus_tag="VHD88_03465"
                     /inference="COORDINATES: protein motif:HMM:NF019924.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen/starch synthase"
                     /protein_id="HVS20877.1"
                     /translation="MRVAILSSEAVPFAKTGGLADVSGALTKALNAEAVESLLIVPLY
                     DQVERSLLSGTFIDDLEVEWRGQRPRVRVRQSEELNAPTYLIEASHYFARGKIYGEPD
                     DFERFAFFCRAAIALLRRLGEAPDVVHCNDWPCGFASVELRARRRHDPFFKNTRTVFS
                     IHNLAYQGPFDPSALWWLGFADDTNDFMLSGAASALKAGIIAADALSTVSPRYAREIQ
                     TSEQGNGLDWLLRTRSDRLAGITNGVDYDVWNPETDPHIAANFSADDLTGKRACKLDL
                     LRRFALP"
BASE COUNT          325 a          455 c          436 g          352 t
ORIGIN      
        1 cgagcgacct gaagaagtca ccgacatgca gcgttcagtc cagggcgaag tgatctcttc
       61 gacgtttgac gagccgccca cgcgccacgt gcaggttgcc gacatggtga tcgaaaaggc
      121 caagcgcctg gtcgagcaca aacgcgacgt cgtgatcctg ctggattcga ttacgcgttt
      181 ggcgcgcgcg cacaacgccg tggttccgcc cagcggtaag attctttccg gtggtatcga
      241 ttcaaacgca ctccagcgtc caaaacgttt ctttggcgcg gcgcgcaaca tcgaagaagg
      301 cggttcgctc acgatcatcg caaccgcgct aatcgacacc ggctcgcgca tggacgatgt
      361 gatctttgaa gaattcaaag gcaccggcaa ctctgaaatt cacctcgacc gccgacttag
      421 cgacaagcgt ctgttcccgg ccatcgatct ggcgcgttca ggaacccgca aggaagaatt
      481 gctattgagc aaggaagacc tggctcgcgt ctgggtgatg cgccgcgtgc ttaacccgct
      541 ttcgcctgtc gagcagatgg aagtcgtgct cgagcgtctc gagaagtcga aatcaaatgc
      601 tgagtttttg gcgtcaatgc aaagctagta aagcaaggat gaaggcggaa ggatgaaatg
      661 gttcaccttt cgactgttag tctttcatcc ttcatccttc ctacttcatc cttgctagta
      721 tgcgcgtcgc aatcctttca tccgaagcag ttcccttcgc caagaccggc ggcctcgccg
      781 acgtttccgg cgcgctgacc aaagctctaa acgcggaagc cgttgagtct ctgctaatcg
      841 ttccactcta cgatcaggtt gagcgcagtc tcttaagcgg cacgttcata gatgatttgg
      901 aagttgaatg gcgcggccag cgtccacgcg ttcgcgtgcg gcagagcgag gagttgaatg
      961 cgccaaccta cctgatcgaa gcgtcgcatt atttcgcccg tggaaaaatc tacggtgagc
     1021 ccgacgactt cgaacggttc gctttttttt gtcgagcggc aatcgccttg ctccgtcggc
     1081 ttggcgaagc gcctgacgta gttcattgca acgactggcc ctgtggcttt gcttcggttg
     1141 aactgcgggc gcgccgacgt catgacccgt tcttcaagaa cactcggacc gtcttttcga
     1201 ttcacaacct cgcgtatcag ggcccgttcg acccttcggc tctttggtgg ctgggattcg
     1261 ccgatgacac aaacgatttc atgctttccg gcgcggcctc ggctttgaag gccggcatca
     1321 tcgcagcgga cgcgctttcg actgtgagtc cgcgttacgc gcgcgagatt caaacgtcag
     1381 aacaaggcaa cggtcttgat tggctgctgc gcacgcgcag cgatcgactc gcgggaatta
     1441 cgaacggagt cgattatgac gtttggaatc cggaaaccga tccgcacatc gccgcaaatt
     1501 tttcagcgga cgacctgacc ggcaagcgcg cctgcaaact agatctgctg cgccgctttg
     1561 ctcttccg
//
LOCUS       DASZZE010000172         2268 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_134223, whole genome shotgun sequence.
ACCESSION   DASZZE010000172 DASZZE010000000
VERSION     DASZZE010000172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2268)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2268)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2268
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_134223"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2159
                     /gene="uvrA"
                     /locus_tag="VHD88_03470"
     CDS             <1..2159
                     /gene="uvrA"
                     /locus_tag="VHD88_03470"
                     /inference="COORDINATES: protein motif:HMM:TIGR00630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HVS20878.1"
                     /translation="EDVRQRLVDSLETCFREGRGRAVIQTAEDKPRQLRYAEAFECKY
                     DGTVYAQPEPRLFSFNNPFGACPTCQGFGNTIGLDLNLVIPNPGLSLNEGAIEPWTKP
                     QFDWARTELRRFAKAERIPMNVPFNQIPRGQQRATINGKGEWAGVRGFFEWLDTKKYK
                     LHVRVFLSKYRGYTLCPDCEGGRLRQEARDVRVGNRTLPEVSALSIKEASAFFDALEL
                     SPEQSAIADRVLFETRRRLRFLVDVGLDYLTLDRLASTLSGGEAQRIQLATNLGSSLV
                     GALYVLDEPSIGLHPRDNDRLIRLLHNLRDIGNTVLVVEHDADMMRSADHILDIGPAA
                     GELGGRLIYEGDFSGLLKDSLSLTGRYLRGEAEIKEPKHRRPLQLKRLNVRGAGEHNL
                     KNINVDIPLDMLVCVTGVSGSGKSTLIHDCLYAGLKKQRGDWQGHVGAYQKVEGGQHI
                     DEVILVDQSPIGRTPRSNPVTYIKVYDAIRETFAHTREAQAHGFEPSHFSFNVPGGRC
                     EVCQGDGTVTVEMQFLADVELVCEECKGTRFKQQILEVRYRGKNIHEVLNMTIREALT
                     FFRDITKIVNKLRVLDEVGLGYLRLGQSATTLSGGEAQRVKLAAHLAKRAGARSLYIF
                     DEPTTGLHFDDINKLLAAFRALIDAGGSLLVIEHNLDVIKTADYIIDLGPEGGDEGGY
                     VVATGTPEEIMSAPNSHTGRYLREYLTRSNGKARQL"
BASE COUNT          490 a          631 c          672 g          475 t
ORIGIN      
        1 gcgaagatgt gcgccagcgc ctggtggatt cgctggaaac ctgtttccgc gaaggccgcg
       61 gtcgagcggt gattcaaaca gccgaagaca agccgcgaca acttcgttac gccgaagcgt
      121 tcgagtgcaa atatgacggc acggtttacg cgcagccgga accgagattg ttcagcttca
      181 acaatccatt cggcgcgtgt ccgacctgcc agggtttcgg caacactatc ggcctcgatc
      241 tcaatctggt gattcccaat ccgggcctga gcctgaacga aggcgcgatc gagccgtgga
      301 ccaagccgca gttcgactgg gccaggacgg agttgcgtcg ctttgccaaa gcggaacgca
      361 tcccaatgaa cgtgccgttc aatcaaattc cgcgcggcca gcagcgcgca accatcaacg
      421 gcaaaggcga gtgggccggc gtgcgcggat tctttgagtg gttggacacg aaaaaataca
      481 agctgcatgt tcgcgtattc ctttcgaaat accgcggcta cacgctctgt cccgattgtg
      541 aaggcggacg tttgcgccag gaggcgcgcg atgtgcgcgt tggtaatagg accttgcccg
      601 aagtttcagc gctgtcgatc aaagaagcgt ccgccttttt tgacgcgctc gaactatcgc
      661 ccgagcaatc agcgattgcc gatcgcgtgc tgtttgagac tcgccggcga ctgcgcttcc
      721 tggtcgatgt tggcctggac tacctgactc tggatcgtct ggcttcgacg ctttcaggcg
      781 gagaagcgca acgaattcaa ctggcaacga atctcggttc atcgctggtt ggcgcgcttt
      841 acgtgctcga cgagccgtct attggtttgc atccgcgcga caacgatcgc ctgattcgtc
      901 tgcttcacaa tctgcgcgac attggcaaca cggtgctggt cgtcgagcac gacgcagata
      961 tgatgcgctc cgccgatcac attcttgata ttggcccagc agcaggcgaa ctcggcgggc
     1021 gtttgattta cgaaggcgat ttttccggac tgctgaagga ttcgctgtcg ctgaccgggc
     1081 gttacttgcg cggcgaagcc gagatcaagg aaccgaagca tcggcggcct ttgcagctca
     1141 agcgtctcaa cgttcgtggc gccggcgagc acaatctgaa aaatatcaac gtcgatatcc
     1201 cgctcgatat gctggtctgc gttaccggag tcagcggctc aggcaaatca acgctgattc
     1261 acgactgcct ctatgccggt ttgaagaaac agcgcggcga ttggcaagga cacgtcggcg
     1321 cttatcaaaa ggtcgaaggc gggcaacaca tcgacgaagt gatcctcgtg gatcaatcgc
     1381 cgatcggccg cacgccgcgc tcgaatccgg tgacctacat caaggtctac gacgcgattc
     1441 gcgagacgtt cgcccatacg cgggaagccc aggcgcatgg attcgagccg tcgcactttt
     1501 cattcaacgt gcccggcggt cgctgcgaag tgtgccaggg cgacggcacc gtgaccgtcg
     1561 agatgcagtt cctcgccgac gtggaattag tctgcgaaga atgcaagggc acacgcttca
     1621 agcaacagat tctcgaggtg cgctatcgcg gcaagaacat tcacgaagtg ctgaacatga
     1681 ccatccgtga agcgctcacg ttctttcgag acatcacgaa aattgttaac aagctgcgcg
     1741 tgctggacga agttggtttg ggttatcttc gtctgggtca atcggccacg acgctttcgg
     1801 gcggtgaagc gcagcgggtg aagctggccg cgcatctggc gaaacgtgcc ggcgcgcgtt
     1861 cgctctacat ctttgacgaa ccaacgacgg gtttgcattt cgatgacatt aacaaactgc
     1921 tcgctgcgtt tcgcgcgctg atcgacgccg gcggctcatt gctggtgatc gaacacaacc
     1981 tggacgtgat caagactgct gactacataa ttgatctggg accggaaggc ggcgacgaag
     2041 gtgggtatgt tgtggcgacg gggacgccag aagagatcat gagcgccccg aactcacaca
     2101 ctggacgcta tctgcgggag tacctgacgc ggtcgaacgg taaagcccga caactctagg
     2161 tttgccctga ctccctctcc cttttgggag acatgtatgt tgaatgtcag gtcggttgtc
     2221 tagaatagcc ttggtttacc aagccattcg aggagaaacg acgatgac
//
LOCUS       DASZZE010000173         2436 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_102804, whole genome shotgun sequence.
ACCESSION   DASZZE010000173 DASZZE010000000
VERSION     DASZZE010000173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2436)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2436)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2436
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102804"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..320)
                     /locus_tag="VHD88_03475"
     CDS             complement(<1..320)
                     /locus_tag="VHD88_03475"
                     /inference="COORDINATES: protein motif:HMM:NF025819.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M67 family metallopeptidase"
                     /protein_id="HVS20879.1"
                     /translation="MLTLLKSHFRKLVEHARQASPHECCGLIGGNDARAQTVYQLRNV
                     AVDPLVTYEAAPEDLFAAQRAMREGGEQLLAIYHSHPRSNDPQPSETDVRLAYYPSAV
                     YFIVG"
     gene            complement(447..2255)
                     /gene="aspS"
                     /locus_tag="VHD88_03480"
     CDS             complement(447..2255)
                     /gene="aspS"
                     /locus_tag="VHD88_03480"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: protein motif:HMM:NF001750.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HVS20880.1"
                     /translation="MIENLGNLERTHSCGVLRKEDVGQRVTLMGWCARRRDFGPLTFI
                     DLRDRDGLTQIVVNQENAPDAHAKAKEVRGEYVLAVTGGVALRDESARNPKLATGDVE
                     VQASELVILNDARTLPFQLDAPSSEALASEELRLKYRYLDLRRPRLQANLRLRHRLLL
                     EINRYMDEHGFTQIETPNLIKSTPEGARDYIVPSRVQPGRFFALPQSPQIFKQICMIA
                     GLDKYYQIARCFRDEDLRADRQPEFSQLDVEMSFATPDQIYALVEGLFARVFQLIDVE
                     LPTPFPRFTFAEVMQRFGSDKPDLRIEGMELKDLSPALAETTFAPFATALGSGGLVKG
                     IAVRGGATMSRKILDELQEFAKRYGAGALAWIKLGDELSSSLLKALGNEVVTRMVEAA
                     TAAKGDAVLIVAGKPDVVAASLGALRNEVAKRAKLIPENVFAPLWVTEFPMFEFHEDD
                     GRYYSMHHPFTSPLDEDVPLLERAVSGETQLFAGLRAKAYDAVINGVEVAGGSIRIHR
                     SDVQSIVFKALGMNEETARARFGFFLDALSFGTPPHGGIASGIERTMMVLVPTENIRD
                     VMAFPKTASAQDLMIDAPGEVDAKQLAELHLKIVKD"
BASE COUNT          523 a          713 c          696 g          504 t
ORIGIN      
        1 ccaacaataa aataaaccgc cgatgggtag taggcaagcc gtacgtccgt ttcggagggt
       61 tgcggatcgt ttgatcttgg atgcgaatgg tagatcgcca gcagttgctc gccgccctcg
      121 cgcatggcgc gttgcgcggc aaacaaatct tcgggcgcag cttcgtaagt gacgagcgga
      181 tcgacggcaa catttcgcag ctgatagacg gtctgtgctc gagcatcatt gccgccgatc
      241 aggccacagc attcgtgagg agatgcctgc cgggcgtgct ctaccagctt acggaaatgc
      301 gacttcaaga gtgtgagcat acgtcaggag attatctcgc aaaggcgcaa agaggaacgg
      361 aagccgcgaa ggggtagctc cgaggcgaat tcttcttggc ggctttgcgg acctttgcgc
      421 ctttgcgtga aatcaagagc agcgaatcag tccttgacaa tcttcagatg cagctccgct
      481 aactgtttcg cgtcgacttc accgggtgcg tcaatcatca agtcctgtgc ggaagcagtt
      541 ttcggaaacg ccatcacgtc gcgaatgttc tcggtcggca ccagcaccat catcgtgcgc
      601 tcgattccgg acgcaatgcc gccgtgcggt ggcgtgccga aggagagcgc gtcgaggaag
      661 aaaccaaagc gcgcgcgcgc cgtctcttca ttcatgccga gcgctttgaa aacgatcgac
      721 tgcacgtcgc tgcgatgaat tcggatcgag ccgcccgcaa cctcgacgcc gttgataacc
      781 gcgtcataag ctttggcgcg gagcccggcg aacaattgcg tttcgccact cacggcgcgc
      841 tcgagcaagg gcacgtcttc atccagcggc gacgtgaaag gatgatgcat tgagtaatag
      901 cggccatcgt cttcgtgaaa ctcgaacatc ggaaattcag tgacccagag aggagcaaac
      961 acgttctcag gaatcagctt cgcgcgctta gccacttcgt tgcgcaacgc gccgaggctg
     1021 gcggcgacga cgtctggttt tccggcgacg attaggaccg catcgccttt cgcagcagtg
     1081 gcagcttcca ccatccgcgt gacgacttca ttgcccagcg ctttcaagag cgacgatgag
     1141 agttcatcgc ccaatttgat ccaggccagc gcgccggcgc cgtagcgttt cgcaaactcc
     1201 tgcaactcgt cgagaatctt gcgcgacatc gtggcgccgc cacgcaccgc gatgcctttc
     1261 accagcccgc cgctgccaag cgccgtcgca aaaggcgcga aggtcgtttc cgcgagtgcg
     1321 ggcgaaagat ccttcagctc cattccttca atccgcagat ccggcttgtc cgaaccaaac
     1381 cgctgcatca cttccgcgaa agtgaatcgc ggaaacggag tcggcaactc aacgtcaatc
     1441 agctgaaaga cgcgcgcgaa caatccttcg accagcgcgt aaatctgatc gggcgtggcg
     1501 aaactcatct cgacgtcgag ctgcgaaaac tcaggctggc gatcggcgcg caggtcttcg
     1561 tcacgaaagc agcgcgcaat ctggtagtac ttgtcgagac ccgcaatcat gcaaatctgc
     1621 ttgaagattt gcggcgattg cggcaacgca aaaaatcttc ccggctgcac tcgcgacggc
     1681 actatgtaat cacgcgcgcc ttcgggcgtc gatttgatta ggttcggagt ttcgatctgg
     1741 gtgaagccgt gttcgtccat gtagcgattg atttccagca gcaggcgatg gcgcaagcgc
     1801 aaattcgcct gtagccgtgg ccgccgcaga tcgagatagc gatacttcaa gcgcagttct
     1861 tcgctggcca aagcctcgga cgatggagca tcaagttgga agggaagcgt gcgcgcgtca
     1921 ttgaggatca caagttcgct cgcctggacc tcaacgtcgc cggtggcgag ctttggattg
     1981 cgcgcgcttt catcgcgcag cgcaactcca ccagttacgg ccagcacgta ttctccgcgc
     2041 acttctttgg ctttcgcatg ggcgtccggc gcgttttcct ggttcaccac gatctgggtg
     2101 aggccgtcgc ggtcacgtaa atcgataaac gtgagcggac caaagtcgcg ccgccgcgcg
     2161 caccagccca ttaacgtcac gcgctggccg acgtcttctt tgcgcaaaac accgcacgag
     2221 tgcgtgcgtt caaggttgcc caggttttcg atcattacaa cttagttttc agtagtgcgt
     2281 tgcagttggc atttgtcgat tcttccccct ctccctttgg gaggggtcgg ggagagggcg
     2341 taagtgtcgg acggagcgcg cagcattaat caacaataag aaaaatactg actaatgtct
     2401 tcgcaatccc tctccctatc cccctcccaa agggag
//
LOCUS       DASZZE010000174         2556 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_134272, whole genome shotgun sequence.
ACCESSION   DASZZE010000174 DASZZE010000000
VERSION     DASZZE010000174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2556)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2556)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2556
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_134272"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1670
                     /locus_tag="VHD88_03485"
     CDS             <1..1670
                     /locus_tag="VHD88_03485"
                     /inference="COORDINATES: protein motif:HMM:NF013592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="M1 family aminopeptidase"
                     /protein_id="HVS20881.1"
                     /translation="GALTSPEGGPLANKRLAYVGPEGSYLMYAARWFPFHDYAADRAT
                     ADITVIVPTGVQVGGISDEPVVPQVDKAGTTRFRFVNKQPVLVGNFVAGQYVAKTLRF
                     GKYELQFFVKPGSENRIANYGELMGRALEFYTNEYGPPAFGSRFVIAQTDDEAIEAYS
                     GPGILFLASKFFDASRQFPEERLQREVAYQWWGQTVGLKTFDDAWISQGLAEWSAFAL
                     RESTLNGGQLDSAQREEQERALTFEQTASIVRAPAALDDQSAAYQSIIFYKGAMVFRM
                     LRETLGKEQFSQVMRRFLDQFRNKNASIDDFERVTSQVAGKNMRYFFAQWVEGTGVPE
                     FSVDYQIIRTRAGKFRTRGTVRQNFENLHMPVELTLRSEGDSQTKILYLDGKSEDFDF
                     ESNGQPIAAEVDPNDKILRMSDDLKVSIVARRGIELFHDGQYAEAQAQLESALKLDRN
                     NSWVYYNLGLVYFEQKNWQLALDNFQAAIDGSSSKPAWVETWARIKRGNAYDAKGDRQ
                     RAVAEYNKALQAGSNYDNAQAVAKKFINTPFDPKAATEQAQNAPGVF"
     gene            1925..>2556
                     /locus_tag="VHD88_03490"
     CDS             1925..>2556
                     /locus_tag="VHD88_03490"
                     /inference="COORDINATES: protein motif:HMM:NF012789.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HVS20882.1"
                     /translation="MDASLSNSKPRQLKPDQAAAAHTLDRHVSVTAGPGAGKTFVLVE
                     RYLEILRTQEASVDNIVAITFTNRAANEMRDRVRKEIDKLLRASNGDERKRWLRHKRA
                     LEAAVITTIHGFCSRLLHEFPVEANIDPQFILLDEHQAAMMLEAVVEETLTEAIQRGN
                     EKIVQMVQGVGRSALAAALAELHRKYRGEGLAITEIETRTAANHARAQEYV"
BASE COUNT          574 a          706 c          767 g          509 t
ORIGIN      
        1 gcggcgcgct gacttctccg gaaggcggac cgctcgcgaa caaacggctc gcgtacgtcg
       61 gcccggaagg ttcttatttg atgtacgccg cgcgctggtt tccgtttcat gactacgccg
      121 cggatcgcgc gactgcggac atcacagtga tcgtgccgac gggagtgcaa gtcggcggca
      181 ttagtgatga gcctgttgtt ccgcaggtcg ataaggccgg tacgacacgt tttcgtttcg
      241 tcaacaaaca gccggtgctg gttggcaact tcgtcgcggg acaatacgtc gccaagacgc
      301 ttcgttttgg aaaatacgag ttgcagttct tcgtcaaacc cggcagcgag aatcgcattg
      361 caaactatgg cgaattgatg ggccgcgcac tggagtttta cacgaacgag tatggcccgc
      421 cggcgttcgg ttctcgcttc gtgatcgcgc agaccgacga cgaagcgatc gaagcctact
      481 ccgggccggg cattttgttt ctggcgtcaa agttctttga cgcatcgcgt cagttccctg
      541 aggagcgttt gcaacgcgaa gtcgcgtatc agtggtgggg tcagacggtt ggcctgaaga
      601 cgttcgacga cgcgtggatt tcgcagggcc tcgctgaatg gagcgcattc gcgttgcgcg
      661 aatcgacgct gaacggcggc cagcttgatt cagcgcagcg ggaagagcag gaacgcgcgc
      721 tgaccttcga acaaacggcg tcaatcgtgc gcgcgccggc ggcgttggac gatcaatccg
      781 cggcttacca atcgatcatc ttctacaagg gcgcgatggt ctttcgcatg ctgcgcgaaa
      841 ctctcggcaa ggagcagttc agtcaggtaa tgcgcaggtt tctcgatcag tttcggaaca
      901 agaacgcttc gattgatgat ttcgagcgcg tgacttccca ggttgccggt aagaacatgc
      961 gctacttttt cgcgcagtgg gttgagggca cgggcgtgcc tgagttcagc gttgactatc
     1021 aaatcattcg cacgcgtgcc ggcaagtttc ggacgcgcgg aaccgtgcga cagaactttg
     1081 agaatctgca catgccggtt gagttgacgc tgcgatccga aggcgacagt cagactaaga
     1141 ttctttacct ggatggcaag agcgaggact ttgatttcga atcaaacggc cagccgattg
     1201 ccgccgaagt cgatccgaac gacaagattc tgcgcatgtc ggacgactta aaagtgtcca
     1261 tcgtcgcgcg ccgcggcatc gagctgttcc acgacggaca gtacgccgag gcgcaggcgc
     1321 aactggaatc ggcgctcaag ctcgatcgca acaactcctg ggtttactac aatctcggac
     1381 tggtttactt cgaacagaag aattggcagt tggcgctcga taattttcag gcggcgatcg
     1441 acggcagcag cagcaaaccc gcgtgggtcg aaacgtgggc ccgcatcaaa cgcggcaacg
     1501 cttacgacgc caagggcgat cgccagcgcg ccgtcgccga atacaacaaa gccctgcaag
     1561 ccggcagcaa ctatgacaac gcgcaggccg tcgcgaaaaa attcatcaac acgccgttcg
     1621 atccgaaagc tgccacggag caagcacaga acgcgccggg tgtgttctga gttagccgcg
     1681 ttcacgcgcc cgcgagggtt attagaccag ccgttttacg gctgggtgat acgcgccgag
     1741 ggaataattg agcccgcttt agcgggcttt ttcaatagtg gctaaagcct gataccgtaa
     1801 gcgcgctaaa gcgcgctaat ctggatcatg cagcgcgccg aaccagcgct gacagcgctg
     1861 gtctagcaac tctgcgggaa agcccgatga atcgggctgg aatctgccaa ttctggatcg
     1921 aggtatggac gccagtctat cgaattcaaa accgcgccag ttgaagcctg atcaagccgc
     1981 ggccgcgcac acactcgacc ggcatgtctc ggtgactgcc gggccaggtg cgggcaaaac
     2041 gttcgtgctt gttgagcgtt atctcgaaat tcttcgcact caagaagcat ccgtcgataa
     2101 catcgtggcg atcactttta cgaatcgcgc cgcgaatgaa atgcgcgatc gtgtgcgcaa
     2161 ggaaatcgac aagctcttgc gcgccagcaa tggcgacgag cgcaaacgat ggttgcgaca
     2221 caaacgcgcg ctcgaagccg cggtgatcac gacgattcac ggcttctgct cgcgtttgct
     2281 ccacgaattt ccggtcgaag caaacatcga tccgcaattc attctgcttg acgaacatca
     2341 agcggccatg atgctcgagg cagtcgtgga ggaaactctt acagaggcaa tccagcgcgg
     2401 caacgaaaaa attgttcaga tggtgcaagg cgtggggcgg agtgcgctgg ccgccgcact
     2461 cgccgaactc catcgcaagt atcgcggaga gggcctcgcg attactgaaa tcgaaactcg
     2521 aacggcggcg aatcatgcgc gtgcgcagga atacgt
//
LOCUS       DASZZE010000175         1815 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_22090, whole genome shotgun sequence.
ACCESSION   DASZZE010000175 DASZZE010000000
VERSION     DASZZE010000175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1815)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1815)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1815
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22090"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(27..1346)
                     /gene="pepP"
                     /locus_tag="VHD88_03495"
     CDS             complement(27..1346)
                     /gene="pepP"
                     /locus_tag="VHD88_03495"
                     /EC_number="3.4.11.9"
                     /inference="COORDINATES: protein motif:HMM:NF008131.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro aminopeptidase"
                     /protein_id="HVS20883.1"
                     /translation="MLKPQLAEFMRRMDPKSVAIIPAAREAVRSHDTNYRYRQNSDFF
                     YLTGFEEPDAIAVIAPSQEKKFTLFVRPRDPERAIWDGCRAGVEGAKSDYSADEAFPI
                     AEFDEKLPEILDGPARLYYAFGHASSELDEKIIRQLTLMRETNRKPLEPPQTIIDTTS
                     ILHEMRVFKSETEVEIMQRAADIAAAAHVEAMKTARPGMKEYEIEALLEASFRRQGAA
                     GSSYTSIVGSGANATVLHYITNLETLRDGDLLLVDAGAEYKGYASDITRSFPVNGKFS
                     HAQRDIYDLVLETQISCIDMVRPGVRLEDLKTHSVEMLTEGMVKLGLLKGDPAKLIEE
                     KKFMQFYMHNLGHFLGIDVHDAGRYYFNGESRPAEPGMVMTIEPGLYISPDTKNIPEG
                     FNQDVPAKYLGIGVRIEDDVLVTENGARVLTNKVPKDAGEIEAVMAR"
     gene            1621..>1815
                     /locus_tag="VHD88_03500"
     CDS             1621..>1815
                     /locus_tag="VHD88_03500"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HVS20884.1"
                     /translation="MAQSIPAKLETAELIARNPATGGEIGRAPLTMPEDVARAVGRAR
                     EAQREWAKRSFHERGRLVMKA"
BASE COUNT          378 a          519 c          500 g          418 t
ORIGIN      
        1 gccaagccta tagaattctt aaaagcctag cgcgccatca ccgcttcgat ctctcccgcg
       61 tctttcggca ctttattagt cagcacgcgc gcgccgtttt cagtcaccag cacatcgtct
      121 tcaatgcgca cgccgatgcc gagatatttc gcgggcacgt cctgattgaa tccttccgga
      181 atgttttttg tatcaggcga gatgtagagt ccgggttcta tcgtcatcac catgccgggc
      241 tcagccggac gcgattcgcc gttgaagtaa taacgccccg cgtcgtgaac gtcgatgccg
      301 agaaagtggc cgaggttgtg catgtagaac tgcatgaact tcttttcttc gatcagcttc
      361 gccggatcac ctttcaacaa acccagcttc accattccct ccgtgagcat ttcgactgag
      421 tgagttttca gatcctcaag ccgcacaccc ggacgaacca tgtcgatgca cgatatctgc
      481 gtctccaaaa ccagatcata gatgtcgcgt tgcgcatggc tgaattttcc gttgacggga
      541 aacgagcgcg tgatgtccga tgcgtagccc ttgtactccg cgccggcgtc aaccaggagc
      601 agatcgccgt cgcggagcgt ttccaggttg gtgatgtaat gcagcactgt cgcgttcgcg
      661 cccgaaccga cgattgaagt gtaagaagac ccggccgcgc cctggcgccg aaaactcgct
      721 tcgagcaaag cctcgatttc gtattctttc atgcccgggc gcgcagtctt catcgcttcg
      781 acgtgcgctg cggcagcgat gtcggcagca cgctgcatga tttcgacttc ggtttcgctc
      841 ttgaacacgc gcatctcgtg caggatcgaa gtcgtatcga tgatcgtttg tggaggctcc
      901 agaggtttcc gatttgtctc gcgcatcagc gtaagctggc gaatgatctt ctcgtcgagt
      961 tcagaactag cgtggccaaa cgcgtagtag agcctcgccg gcccgtcaag aatctccggc
     1021 aacttctcgt caaactcggc aatcggaaac gcttcgtcag cgctgtaatc gctcttcgcg
     1081 ccttcgacgc cggcgcgaca gccgtcccaa attgctcgct ccggatcgcg cgggcgcacg
     1141 aacagcgtga acttcttttc ctgcgacggc gcaatcaccg cgatcgcgtc cggctcttca
     1201 aatccggtca ggtaaaagaa gtctgagttc tggcgatagc gatagtttgt gtcgtgcgag
     1261 cgcacggctt cgcgcgccgc aggaatgatg gcgacggatt tggggtccat gcggcgcatg
     1321 aattcggcga gttgcggttt gagcattatg atctcctcga actgttgaag ttttgaaaat
     1381 gcattgtagc cgagagtgat gcgcggcgga aacgacgacg aacctaccgc aagtgtactt
     1441 tgcgttcctt ttgcgagggc ctttgcgaac tttgcgtttc aggtttgggc tctgatgaaa
     1501 caacaccctc ggggaacttg agcattaaac gcaaagagcg caaaggccct cgcaaaggtc
     1561 gcaaaggaaa atcgtctttt atcttccttt gaatctgctt ctgcgcgata atctccggcg
     1621 atggcccaga gcattcccgc taaactggaa acagccgaac tcatcgctcg caacccggca
     1681 accggtggag agattggccg cgcgccgctg acgatgcccg aagacgtcgc tcgcgccgtt
     1741 gggcgcgcac gtgaagctca acgcgaatgg gccaagcgat cttttcatga gcgcggacga
     1801 ttggtaatga aagcg
//
LOCUS       DASZZE010000176         3134 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_38771, whole genome shotgun sequence.
ACCESSION   DASZZE010000176 DASZZE010000000
VERSION     DASZZE010000176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3134)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3134)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3134
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38771"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..336
                     /locus_tag="VHD88_03505"
     CDS             <1..336
                     /locus_tag="VHD88_03505"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF017200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S16 family serine protease"
                     /protein_id="HVS20885.1"
                     /translation="ALVSALSQRPVRKDVAMTGEITLRGNVLPVGGVKEKVLAARRAR
                     VTKIILPAQNRRDMDEVPKEPFKDVRFVFVDNMRQVFREALKEKAAPALSSSPRPARL
                     PQAASGRTI"
     gene            773..2482
                     /locus_tag="VHD88_03510"
     CDS             773..2482
                     /locus_tag="VHD88_03510"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HVS20886.1"
                     /translation="MLVGAALFFPAIIQAQGPTGSSARDIPTEVQKSDTRVDQIIERA
                     NAHFKQGKLNLEDNKREYARDEFDKAVDEILMSGLDVRASQRLQTFYLELVEKVYREE
                     VPLIQAAPPQNATPVVAQGAPNPKAETVEVAKTQQPKPAQIGFSQQGFEPSPLDPLSK
                     LILTEDEKKVSDSDIAALEQAKNALDFNFTSNPLIQQFINYYQGRGRTTMESGLRRSG
                     RYMKLARETFRRYGVPEDVTWLGQVESAWQPRALSYAAASGLWQFVPSSGRGYGLQQT
                     AWVDERNSFEKATEASAKYLKDLAKRYNGDWLLAMAAYNTGALNVDRAISRVGAANYW
                     KIYPYIAQQTQNYVPNILAVILIAKNPEKYGFHGIRPEAPLSYDPVPVTTATSLRLIA
                     DATDTSVDMIQALNPELKRDTTPRGESYNVRVPAGKGKQLASLLKRIPADRRDSVRVV
                     AIAPGEELQSVSNRTGVSVVTLQTMNSGVDLKSTTRLVVPNNNVRLTNMTRAKPNATA
                     APSLTKIRARKGDTIAKIAAAHKLSAAELVRLNGIGPNVELQAGQEIKLPGAPSVPSS
                     RQR"
     gene            2681..>3134
                     /locus_tag="VHD88_03515"
     CDS             2681..>3134
                     /locus_tag="VHD88_03515"
                     /inference="COORDINATES: protein motif:HMM:NF024931.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium chelatase domain-containing protein"
                     /protein_id="HVS20887.1"
                     /translation="MLFRTQSAAVYGIDANLVDVEVDLTPVRNETDQPSSVIIVGLPD
                     LAVLESRERIRAAINNSAFFFPFHKTTINLAPADVRKEGASFDLPIALGILGANGDLG
                     DAQHLTDILSVGELSLDGRVRPIRGALPIALRARQSQTKHLLLPDENAK"
BASE COUNT          725 a          877 c          854 g          678 t
ORIGIN      
        1 gcgctggttt cagcgctatc gcaaaggccg gtgcgaaagg atgtcgcgat gaccggcgag
       61 atcactctgc gtgggaacgt actgcccgtt ggcggcgtca aggaaaaagt tctcgcggcg
      121 cgacgtgcgc gagtgacaaa gatcattttg ccggcgcaaa acagacgaga catggacgaa
      181 gtgccgaaag aaccgttcaa ggacgttcgc ttcgtctttg ttgataacat gcgacaggtt
      241 ttccgcgagg ctttgaaaga aaaagcggcg ccggctttgt cgtcgagtcc gcggccggcc
      301 cgtctgccac aggccgccag cgggcgaacg atttagtccg gagttccctc cgagcagatc
      361 gcgagttgat gccatgcctg agagcgcgga agagaatcag acgctgaaac gcgtggtctt
      421 atggatcgtt ttattgctgc tgattctcgc gccgccaata gttgcggtac tgcttttcct
      481 gaatgtctag accatggatg aaaagcgagc aaaccagcgg ttttgggccg atttttgttg
      541 ggtagttcag tttgacagcc cagtacccct gtgataacct cctcattcgt cgtcgcccgg
      601 tcatttcggg ttcgacgaaa atcggaactt ttcatcgttc cgcattgttt tagtagtgaa
      661 tgccacaggc gcgactcaag gtgatagtcg cagtcgagga ttcgcccaaa gcattaccag
      721 aggagaacaa cgattgatga cccgtagccc tattagttta gctgtacgct ccttgctcgt
      781 aggcgcagcg cttttcttcc cagcaatcat tcaagctcaa ggtccgaccg gctcttccgc
      841 tcgcgatatc ccaactgaag tccagaagag cgacacgcgc gtcgatcaaa ttatcgagcg
      901 cgctaacgct cacttcaaac agggaaagct caatcttgaa gacaacaagc gtgagtacgc
      961 gcgcgacgaa ttcgacaagg ccgtcgatga aattctgatg tcggggcttg acgtgcgcgc
     1021 cagtcagcgt ttgcaaacgt tttatctgga gctggtcgaa aaggtttatc gcgaagaagt
     1081 gccgctgatc caggcagcgc cgccgcaaaa cgctacgccg gtagtcgcac agggtgcgcc
     1141 gaatccgaaa gccgaaaccg tcgaggtcgc caaaactcaa caaccgaaac cagcacagat
     1201 cggtttcagc cagcaagggt ttgagccttc accgcttgat ccgctcagca agctaatcct
     1261 gacggaagac gagaaaaaag tctctgattc ggatatcgcc gcgcttgagc aggccaagaa
     1321 cgctctcgat ttcaacttca cgagcaatcc gctgattcaa caattcatta attactatca
     1381 gggccgcgga cgcaccacga tggaatctgg tctgcgccgg tctggtcgct acatgaaact
     1441 ggcgcgcgaa actttccgcc ggtatggcgt gcctgaagac gtaacctggc tcggacaagt
     1501 agagagcgcg tggcaaccac gagcgctttc gtatgccgcg gcttcgggcc tgtggcagtt
     1561 tgtcccaagc tctggacgtg gctacggttt acagcagact gcatgggttg acgagcgaaa
     1621 cagtttcgag aaagcgaccg aggcgtcggc taagtactta aaggatttgg caaagcgcta
     1681 caacggcgac tggttgctgg cgatggctgc ttacaacacc ggagctctga acgtagatcg
     1741 cgcgatttcg cgagtaggcg cggccaatta ctggaaaatt tatccttaca tcgcgcaaca
     1801 gacacagaac tatgtaccta atatcctcgc cgtcatcctg attgctaaga atccagaaaa
     1861 atacggtttt catggcattc ggcccgaagc tcctttgtct tacgatccgg ttccggtcac
     1921 gacggcaacc agtctgcgac tgatcgctga cgcgaccgac acgagcgttg atatgattca
     1981 agctctgaat cccgaactca aacgcgacac gactccacgc ggcgagtctt acaacgtgcg
     2041 cgtgcccgct ggcaaaggca agcaactagc ctcgttgctg aaacgaattc ccgctgaccg
     2101 tcgtgactct gtgcgcgtcg tcgcgattgc ccccggggaa gaactacagt cggtttcgaa
     2161 ccgcacgggc gtcagtgtcg tgaccttgca gacgatgaac agcggggtag atttgaagtc
     2221 gacgacgagg ctggtcgttc ccaacaacaa tgttcgcttg accaacatga cgcgggcgaa
     2281 gccgaacgcc accgccgcgc ccagtctgac caagattcgc gcacgcaagg gcgacacgat
     2341 cgctaagatt gccgccgcgc acaagctgtc tgccgccgaa ttagtacggc tgaatggcat
     2401 cggaccgaat gtcgaattgc aagctggaca ggaaattaaa ttgccgggcg ccccgagcgt
     2461 tccaagttcc cggcagcgat aatctcgtca actgattaag taagtcataa gcgttcgctt
     2521 tttgatcgag cgctgtacaa atagcgagcg cgctttcttt atcgagaggc gcgcttgttt
     2581 tacgtaggac agacttggat tctttgcaat taatgtcagc gcggtatccc atgatctcta
     2641 ttcacgtcac cgactgaagt ctgcgccacc aacgactccc atgcttttcc gcacccaatc
     2701 cgccgccgtt tacggtatcg acgcgaacct ggttgatgtc gaagtcgatc tgactccggt
     2761 acgcaatgaa accgatcagc cttcttcagt aatcatcgtc ggtttgcctg acctggccgt
     2821 ccttgaatcg cgcgaacgca ttcgcgcggc catcaacaac agcgccttct tctttccgtt
     2881 ccacaagacg acgatcaatc tggctccagc cgacgtgcgc aaagagggcg cgagtttcga
     2941 tctgccaatc gcgctgggca ttctcggcgc caatggagat ctcggcgatg ctcagcatct
     3001 gaccgatatt ctttctgtcg gtgaactttc tctagacggt cgcgtgcgac caattcgcgg
     3061 cgcgttgccg atcgctttgc gcgctcgcca gtcgcagacc aaacacctgc ttctgccgga
     3121 cgaaaatgcg aagg
//
LOCUS       DASZZE010000177         5362 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_282245, whole genome shotgun sequence.
ACCESSION   DASZZE010000177 DASZZE010000000
VERSION     DASZZE010000177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5362)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5362)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5362
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_282245"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2775
                     /gene="rpoB"
                     /locus_tag="VHD88_03520"
     CDS             <1..2775
                     /gene="rpoB"
                     /locus_tag="VHD88_03520"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR02013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000345 - cytosolic DNA-directed RNA
                     polymerase complex [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HVS20888.1"
                     /translation="ELLENQFRIGLERMERAIKEKMSIHQEMQTTMPRDLINAKPVTA
                     AVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLSRERAGFEVRDVHPTHYGRI
                     CPIETPEGPNIGLISSLACYARINEFGFIEAPYRKVVKSVVTEFVRVRNGGDTKYKPG
                     DHVPFDDVEKANKRVGANGLKASFEPDPFYLTAWEEDKHVVGQANIALDENGYIVNER
                     NAARRAGEFILARRDEIEYVDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQSVP
                     LLRAEAPYIGTGMENVTARDSGAVVIAKRDGVVDYTDSERIIVKADHNVDGTISREVT
                     ADIYTLIKFKRSNQNTCINQRPIVHVGERVAKGQVIADGPCTDRGELALGRNILVAFM
                     PWRGYNFEDAILVSERLVKEDYYTSIHIEELEIEARDTKLGPEEITRDIPNVGENMLR
                     DLDESGIIRIGAQVKPGSILVGKVTPKGETQLTAEEKLLRAIFGEKAADVKDASLVSP
                     PGIDGTVVDVQVFTRKGQEKDQRSLSIETSEEERLRRDLEDEIRILHEQRDERIYELF
                     EGRKLSHDLTVNREVVIPKGESITREMLKAVEPKALRKAHVASSRVDAAAEVKEYEDR
                     TERQIRILSDIYEEKIAKLRQGDELSPGVIKMVKVFVAMKRKLSVGDKMAGRHGNKGV
                     IARILPEEDMPYLPDGTPVEIVLNPLGVPSRMNVGQILETHLGWAARVLGLYFATAVF
                     DGATEKEIKVKLNEAGARARELGLPEIVNESGKAVLYDGLTGDPFEQKVTVGYIYMLK
                     LSHLVDDKIHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAHILQELLT
                     AKSDDVAGRSKIYEAIVKGEADFDPGLPESFNVLVRELQSLCLDVELVQKKDGGADEP
                     IAEPLITSGI"
     gene            2892..>5362
                     /gene="rpoC"
                     /locus_tag="VHD88_03525"
     CDS             2892..>5362
                     /gene="rpoC"
                     /locus_tag="VHD88_03525"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR02386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000345 - cytosolic DNA-directed RNA
                     polymerase complex [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HVS20889.1"
                     /translation="MFRFNQEKTQLAPDFEAIRISLASPEKIRQWSHGEVTKPETINY
                     RTFKPERDGLFCARIFGPVADWECLCGKYKRMKHRGVICDKCGVEVTQAKVRRERLGH
                     IDLASPCSHVWFFKGLPSRIGHLLDIPLRELEKVLYFESYIVIDPGDLTGDDKLKERE
                     LLTDERFRELTREHPGQFVAKMGAEAIKELLSMVNIEELAVELRRRMREETSQQKKLK
                     FSKRLKVTTSFLKSGNHPEWMILDVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIN
                     RNNRLKKLMELKAPEVIVRNEKRMLQEAVDALFDNGRRGRVLRGVNNRPLKSLSGTLK
                     GKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKKMALELFKPFIYNQLEKQAH
                     AATIKQAREMVERQEPVVWDILEEVIREHPVLLNRAPTLHRLGIQAFEPVLVEGKAIK
                     IHPLVCTAFNADFDGDQMAVHIPLSPEAQIEAAVLMLSSNNILSPASGQPIAVPSQDI
                     VLGIYYLTREKEGAKGEGRVFASVEEVLLALDAKEVTTQTPIKLRVTGDLIDLTQEHD
                     SQDILRAVAQEDIRRVVNTTVGRVIFNDSIPKGLPYINGTLRKKGLQSLVNYSHIRLG
                     HEMTVKMLDDLKNLGFLYATKAGISIGIDDLVTPPSKPEIVGKAEKDVITVEQQYRDG
                     VITNGERYNKVIAIWSEATDKVAKEMFKAMDDREKATKEMNPILIMSDSGARGSAQQI
                     RQLAGMRGLMARPSGEIIETPIQSNFREGLNVLQYFISTHGARKGLADTALKTADSGY
                     LTRRLVDVAQDVIISEPDCGTLRGI"
BASE COUNT         1243 a         1432 c         1597 g         1090 t
ORIGIN      
        1 gagctgctgg aaaaccagtt tcgcatcggg cttgagcgca tggagcgcgc gatcaaagag
       61 aagatgtcga ttcatcagga aatgcagacg accatgccgc gcgatctcat caacgccaag
      121 ccggttacgg ccgcggtgcg cgagttcttc ggctcgtcac aactttcgca gttcatggat
      181 cagacgaatc cgctctcaga gatcactcac aagcgtcgtc tgtccgcgct cggaccgggc
      241 ggcttgagcc gtgagcgcgc cggatttgaa gtgcgcgacg tgcatccgac tcactacggc
      301 cgcatttgcc cgatcgaaac gccggaaggt ccgaacattg gtttgatttc ttcgttggct
      361 tgctatgcgc gcatcaacga gtttggtttt atcgaagcgc cctatcgaaa agtcgtcaag
      421 agcgtcgtga cagagtttgt acgcgtcaga aacggcggtg atacgaagta caagcccggc
      481 gaccatgtgc cgtttgatga tgttgaaaaa gcgaacaaac gtgtcggcgc aaatggctta
      541 aaggcgagtt tcgagcctga tccgttttat ctgaccgcgt gggaagagga caagcatgtg
      601 gtcggccagg ccaacattgc gctggacgaa aacggttaca tcgtcaacga gcgcaatgcg
      661 gcgcgaagag caggcgagtt cattctcgcg cggcgtgacg agattgagta cgtggacgtg
      721 tcgccgaagc aactggtttc agtggccgcg tcattgattc cgtttctgga gaacgacgac
      781 gccaaccggg ccttgatggg gtcaaacatg cagcgacagt ccgtgcctct gctgcgagcc
      841 gaagcgccgt acatcggcac cggaatggaa aacgtcacag cgcgcgattc aggcgcggtc
      901 gttatcgcaa agcgcgatgg cgtggttgat tataccgact ccgaacgcat catcgtcaaa
      961 gcagatcaca atgttgacgg caccatctcg cgcgaggtca ccgctgacat ctacacgctg
     1021 atcaagttta agcgttcgaa tcaaaacacc tgcatcaatc agcgtccgat cgtccacgtg
     1081 ggcgagcgag tggcgaaggg tcaggtaatt gccgacggcc cgtgcacgga tcgcggcgag
     1141 ttggcattgg gacgcaacat cttggtggcg ttcatgccct ggcgcggtta caactttgaa
     1201 gacgcgattc tggtttccga acgtttggtg aaagaggact actacacttc gattcacatc
     1261 gaagagttgg agatcgaagc gcgcgatacc aaactcggtc ccgaggaaat cacgcgcgac
     1321 attccgaacg tcggagaaaa catgctgcgc gatctggacg agagcggcat cattcgcatc
     1381 ggcgcccagg tcaagccggg ctcgattctg gtcggcaaag tcacgcccaa aggcgagacg
     1441 caattgaccg cggaagaaaa actgctgcgc gcgatctttg gcgagaaagc cgcggacgtg
     1501 aaagacgcat cgctggtttc acctccgggc attgacggca cagtcgtcga tgttcaggtt
     1561 ttcacccgaa aaggtcagga gaaagatcaa cgctctctct cgatcgaaac gagcgaagaa
     1621 gaacgcctgc gtcgcgacct tgaagacgaa attcgtatcc tgcacgagca gcgcgacgaa
     1681 cgcatctatg aactattcga aggtcgcaaa ctctcgcacg acctgacagt taatcgcgaa
     1741 gtcgtaatcc ccaaaggcga atcgattact cgcgagatgc tgaaagccgt cgagccgaaa
     1801 gctttgcgca aagctcacgt tgcttcttcg cgggtggacg cggctgccga agttaaggaa
     1861 tacgaagatc gcactgaacg gcagatcagg attctgtcgg acatctacga agaaaagatc
     1921 gctaagctgc gacaaggtga cgagctttcg ccgggcgtaa tcaagatggt gaaagtgttt
     1981 gtcgccatga aacgcaagct ttccgtcggc gacaagatgg ctggccgtca cggcaacaag
     2041 ggcgtaatcg cgcgcatcct gccggaagaa gacatgcctt atcttcccga tggaacgccg
     2101 gtcgaaatcg ttttgaatcc tttgggcgtg ccttcgcgca tgaacgtcgg acagattctc
     2161 gagacgcacc tcggctgggc cgcgcgcgtg ctgggtctct atttcgcgac ggcggttttt
     2221 gacggcgcga ctgagaaaga gattaaggtg aaactgaatg aagccggtgc tcgcgctcgc
     2281 gaactcggac ttcctgagat cgtcaacgag tcgggcaagg cggtgttgta cgacggcctg
     2341 acgggcgatc cattcgaaca gaaagtgaca gtcggctaca tctacatgct caagctttcg
     2401 catctggttg acgacaagat tcacgcgcgc tcgattgggc cgtactcttt gatcacacaa
     2461 cagccgctgg gtggcaaggc tcagttcggc ggacagcgct tcggcgaaat ggaggtgtgg
     2521 gcgttggaag cttacggcgc cgcgcacatt ttgcaggaac tgctgaccgc gaaatccgac
     2581 gacgtagccg ggcgttcgaa gatttacgaa gcaatcgtca agggcgaagc cgatttcgat
     2641 cccggcttgc ctgagtcgtt caacgtgctc gtgcgcgagt tgcagtcgct ttgcctggat
     2701 gtcgaactcg tgcagaaaaa ggacggcggg gctgacgaac cgattgccga gccgttgatt
     2761 accagcggaa tctagtcagt gagcagtgag cagtaagcag ttgcctgctc gactaatccg
     2821 ccggtgctca tgcgatttga gaatgatagt tagacgaagc agtatggctg ctcactgaat
     2881 tggagaacga cgtgtttcga ttcaatcaag agaaaacgca actcgcgcct gacttcgagg
     2941 cgattcgcat ctcgctggct tcgccggaaa aaatccgtca gtggtcgcac ggcgaagtga
     3001 ccaagcctga gacgatcaat taccgcacgt tcaagcctga gcgcgacggt ctgttttgcg
     3061 cgcgcatctt cggacccgtc gctgattggg agtgtctctg cggcaagtac aaacgcatga
     3121 agcaccgggg cgtgatctgc gataagtgcg gcgtcgaagt cactcaggcg aaagtgcgcc
     3181 gcgagcgtct gggtcacatc gatctggcca gcccgtgctc gcacgtctgg ttcttcaaag
     3241 gcctgccttc gcgcatcggt cacttgctcg acattccttt gcgcgagctg gagaaagttc
     3301 tttacttcga atcctacatc gtcatcgatc ccggcgacct gacgggtgat gacaaattga
     3361 aagagcgcga gctgcttacc gacgaacgct ttcgcgaact aacgcgcgag catccgggac
     3421 agtttgtcgc caagatgggc gcggaagcga tcaaagagct gctgtcgatg gttaacatcg
     3481 aagagttggc cgttgagctg cggcgcagga tgcgcgaaga gacttcgcag cagaagaagc
     3541 tgaagttttc caagcggctg aaagttacga cttcattcct taaatccggc aatcatcccg
     3601 agtggatgat tctcgatgtg attccggtga ttccacccga gctgcgtccg ctggtgccgc
     3661 tcgatggcgg tcgcttcgcg acctctgacc tgaacgatct atatcgccgc gtcatcaacc
     3721 gcaacaaccg tttgaagaag ttgatggagc tgaaggcgcc ggaagtgatc gtgcgcaacg
     3781 aaaagcgcat gcttcaggaa gccgtggacg cactgttcga caacggtcgg cgtggtcgcg
     3841 ttctgcgcgg cgtaaacaat cgaccgctca agtcactttc aggaacattg aaaggtaagc
     3901 aaggacgttt tcgtcagaac ctgctgggca agcgcgtcga ttattctggc cgttcagtca
     3961 tcgtcgttgg tcccgagctg aagcttcatc agtgtggctt gccaaagaaa atggcgctgg
     4021 aacttttcaa gccgttcatc tacaaccagc tcgaaaagca ggcgcacgcc gccacgatca
     4081 agcaagcgcg tgaaatggtc gagcgtcagg aaccggtcgt gtgggacatc ctcgaagaag
     4141 tcattcgcga gcatccggtg cttttgaatc gcgcgcccac gctgcaccgt ctcggcattc
     4201 aggcgtttga gccggtgctg gtcgaaggca aagccatcaa gattcatccg ctcgtttgca
     4261 ccgcgttcaa cgcggacttt gacggcgatc agatggccgt gcacattccg ctctcgcccg
     4321 aagcgcagat cgaagcggcc gtgctgatgc tttcttcgaa caacattctc agtccggcga
     4381 gcggtcagcc gatcgccgtg ccgtcgcagg atatcgtgct cggcatttac tatctgacgc
     4441 gtgaaaagga aggcgcaaag ggcgaaggcc gcgtgttcgc ttcggtggaa gaagttttgc
     4501 tcgcgctcga tgcgaaagaa gtgacgacgc agacgccgat caaacttcgc gtcacgggcg
     4561 acctgatcga tctgacgcag gagcacgact cgcaggacat tctgcgcgcg gtggcgcagg
     4621 aagacattcg gcgcgtcgtc aatacgacgg tgggcagggt gatcttcaac gactcgattc
     4681 cgaaaggtct gccttacatc aacggcacgc tgcgcaaaaa gggcttgcag tcgctagtca
     4741 actattcgca cattcgtctc ggccacgaga tgaccgtgaa gatgctcgac gatttgaaga
     4801 accttggttt cctttacgcg actaaagccg gcatctcaat cggtatcgac gatctggtaa
     4861 cgcctccttc caagcccgag atcgtcggca aggctgagaa ggatgtgatt accgttgagc
     4921 agcaatatcg cgacggcgtg atcaccaacg gcgagcgcta caacaaggtc attgcgattt
     4981 ggtcggaagc gacggacaag gtcgcgaaag agatgttcaa ggccatggac gatcgcgaaa
     5041 aagcgaccaa ggaaatgaat ccgatcctga tcatgtcgga ttccggcgcc cgcggttcgg
     5101 cccaacagat tcgccagctc gccggcatgc gcggattgat ggcgcggccg tctggtgaaa
     5161 tcattgagac tccgattcag tcaaacttcc gcgaaggcct gaacgtgttg cagtacttca
     5221 tctcgacgca cggcgcgcgt aaaggcctgg ccgatacggc gctgaaaacg gccgactcag
     5281 gctatctgac gaggcgtttg gttgacgtgg cgcaggacgt aatcattagc gagcctgact
     5341 gcgggacttt gagaggcatt tg
//
LOCUS       DASZZE010000178         2822 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_167904, whole genome shotgun sequence.
ACCESSION   DASZZE010000178 DASZZE010000000
VERSION     DASZZE010000178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2822)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2822)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2822
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_167904"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(51..1403)
                     /gene="trmFO"
                     /locus_tag="VHD88_03530"
     CDS             complement(51..1403)
                     /gene="trmFO"
                     /locus_tag="VHD88_03530"
                     /inference="COORDINATES: protein motif:HMM:NF003739.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate--tRNA-(uracil(54)-
                     C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO"
                     /protein_id="HVS20890.1"
                     /translation="MNEIIVIGGGLAGVEAAWQAAQAGARIRLFEMRPVKQTPAHRTD
                     KLAEIVCSNSLKSDEPGTASHLLKEELRRGGSLVMEAAAETRVPAGAALAVDRQQFAE
                     FITERIESHPNIEIVREEMTTIPADAITIIATGPLTSEALTAEIMKLTGDDQLYFYDA
                     IAPIVAADSVDTSIAFRAARYGKGGDDYLNCPFNEEQYARFYQALIEANSVPLQRFEE
                     TRWFEACLPIEELARRGVDTLRYGPMKPVGLVDPRTGREPYAAVQLRQENLMADAYSM
                     VGFQNHLRYGEQARVLRTIPGLERAEFLQFGQIHRNTYINAPRVLAATMQMRSASNLF
                     FAGQITGVEGYVESVAMGWLAGNNAARFLKGEELLVAPPRSAIGALARYVSSAETKNY
                     QPVNITFALLAPLDAEAQKRVRRKRDRRTLQVELALEEWDSWLQTVWKKREPVLAAAT
                     "
     gene            complement(1591..1806)
                     /locus_tag="VHD88_03535"
     CDS             complement(1591..1806)
                     /locus_tag="VHD88_03535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20891.1"
                     /translation="MKGQTRNIETFKVGAGTRVNEFDFHKRQGEMHEHAANEHEQGAG
                     ATEAKAARVAEIMKKAHEKVLRRKKRR"
     gene            2063..2138
                     /locus_tag="VHD88_03540"
     tRNA            2063..2138
                     /locus_tag="VHD88_03540"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2096..2098,aa:Thr,seq:cgt)
BASE COUNT          590 a          810 c          761 g          661 t
ORIGIN      
        1 gacggtcggg tttctgccac ggagacacgg agatcttttg ccgctttcga tcatgtcgct
       61 gccgccaata ctggttcgcg ttttttccaa accgtttgca gccaactgtc ccactcttcc
      121 aaagccaact cgacttgcag cgttcgccgg tcgcgtttgc gccgcactcg cttttgcgct
      181 tcagcgtcga gcggagcgag cagcgcaaac gttatgttga ccggctgata gttctttgtc
      241 tccgcgctcg aaacgtatcg cgccagcgcg ccgattgcac tacgcggcgg cgcgaccaaa
      301 agttcttcgc ccttcaagaa gcgcgcggcg ttgttgccag ccagccaacc catcgccacc
      361 gattcgacgt aaccttcgac gccggtgatt tgtccggcaa agaaaaggtt ggaagccgaa
      421 cgcatctgca tggttgccgc gagcacgcgc ggcgcgttga tgtaagtgtt gcgatgaatc
      481 tgtccaaact gcaaaaactc agcacgctcg agtccgggaa tcgtgcgcag cacacgcgct
      541 tgctcgccgt agcgcagatg attttgaaaa ccgaccatgc tgtacgcgtc ggccatcagg
      601 ttttcctgac gcagttgcac ggcggcgtaa ggttcgcgac ccgtgcgcgg atcgacgagc
      661 ccaaccggct tcatcggtcc atagcgcaaa gtgtcaacgc cgcggcgcgc aagttcttca
      721 atcggcagac aagcttcgaa ccaacgcgtc tcttcaaaac gctggagcgg aacgctgttc
      781 gcttcgatca aagcctgata gaagcgcgcg tactgctctt cgttgaatgg acaattgaga
      841 tagtcgtcgc cgcccttgcc ataacgagca gcgcgaaaag cgatcgaagt gtcaactgag
      901 tcggccgcga cgatcggcgc gatcgcatcg tagaagtaaa gctgatcgtc gccggtcaat
      961 ttcatgattt ccgcagtcaa cgcttccgac gtgagcgggc cagtagcgat gatcgtaatc
     1021 gcgtcggcgg ggatcgttgt catctcttcg cgtacgattt cgatgttcgg atgcgattcg
     1081 atgcgttcgg tgatgaactc agcgaactgt tgacgatcga cggcaagcgc ggcgcccgca
     1141 ggcacgcgcg tctccgctgc ggcttccatt accagcgaac caccgcgccg caactcctct
     1201 ttcaaaagat gagaagcagt gcccggctca tctgatttca aagagttcga gcagacgatc
     1261 tcagcgagct tgtccgtgcg atgtgccggt gtttgtttga cgggccgcat ctcgaacagg
     1321 cgtatacgcg cgccggcctg cgccgcctgc caggcggctt caacgccggc cagtcctcca
     1381 ccgatgacaa tgatttcatt cattgtagga gcgcaggcat ctttgcctgc agtccgccgg
     1441 catttgtgcc gtttacccgc tcgctacagc gagcggttcc gtaccggatt tctttgcggc
     1501 tttgccgcct gatgtgcgga aaggctgtgc ctttccggct atgactttca ataaaatttc
     1561 tgcggcgagg ctctgcctcg ccgaaaagac ctaacgccgc tttttccgtc gcaaaacttt
     1621 ctcatgcgcc ttcttcataa tctctgccac tcgcgcagct ttggcttccg ttgcgccagc
     1681 cccttgctca tgttcgttag cggcatgctc gtgcatctcg ccctggcgct tatgaaaatc
     1741 gaattcgttg acgcgcgtgc ccgcgcctac cttgaaggtt tcgatgttgc gtgtttgacc
     1801 tttcatgatt actccttcct tgtgccacag actttagtct gtgattgtgg agtgcgccgg
     1861 cagagcgaag cggcgacggc gctttggata tcggcgagct atacatcgag cttcgcttag
     1921 atcaatgctt cattcgtgtg caaatccaaa gcggtgcgct acgcttgcca ccgcactcca
     1981 aatctgatca cagactgaag tctgtgccac acgcgcttga cactcaaaag agcgcgttcg
     2041 tatagttcag atgctcaagc gagccggctt agctcagttg gtagagcgtg cgattcgtaa
     2101 tcgcaaggtc atcggttcaa ctccgatagc cggctccatt gctattatag tcatctcaac
     2161 gaattgaaca cagccaatga gcgagcgcat tgtcgctcgc tttacttctg ggatcgcgcc
     2221 gatgattttc agagtagcac aatgccctcg ctgcggcgga gatctcggac tccgtgacgt
     2281 cggcgaaact gttcgttgca tctattgcgg aggaacagtg gttgtcgaac gaagccaagt
     2341 atccgattat caggcttccc aaccttccgt ccaaaagaga ctaagaaccc tcaaagaggg
     2401 accaattcag acaagtgaag tagcggaact gcaacgcaaa tgggctggca gaagttgtac
     2461 tcatgaagtt gttatgaggg aatgctattt tgaggtaaag gactggcgac tgcgtttgca
     2521 taacgtgcgg cgaagcattt gcgcaaattc gagtcaactg tcctggttgc gatttgccgg
     2581 tatcgtgtga cgatacattt tgtccgcaat gtaacgagcc tgtagcgcga ccttgactga
     2641 cagctttgat cccaaatcca gttagattcc tgactctgtc actcaactgt tgttatatcc
     2701 atgcgctttc gccggccagg cggcgatgaa cagcagagtg ccgatgactg cggtcaggat
     2761 caatccgaaa aagcctgcgt cccaaccgta gcgctgcacc aacgcgccta atccccaacc
     2821 tg
//
LOCUS       DASZZE010000179         3040 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_265620, whole genome shotgun sequence.
ACCESSION   DASZZE010000179 DASZZE010000000
VERSION     DASZZE010000179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3040)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3040)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3040
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265620"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..692
                     /locus_tag="VHD88_03545"
     CDS             <1..692
                     /locus_tag="VHD88_03545"
                     /inference="COORDINATES: protein motif:HMM:NF015684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HVS20892.1"
                     /translation="SLRARIRGNIAQVANGSEVRWLVSADGARIYSYEFDDQRQVLLK
                     PAIFEFDASGVELKRVTMGDEGKWPKPGELLITSARWINLDAQQVTRQSAESLAINSA
                     DPPAVFKPTVDRPSQLSADRLSGYIKTLRERGVDTAALAVALHRKYAEPFSVIVMALI
                     GMPLAISFGRKSTVIALCSAVVVSLAFWLVSGGFQQLGEHALLPPAAAAWTPVVIFAG
                     GGLYFISRVRT"
     gene            complement(716..1147)
                     /locus_tag="VHD88_03550"
     CDS             complement(716..1147)
                     /locus_tag="VHD88_03550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20893.1"
                     /translation="MEAFLPDTVKAILLGLLAIAFALARLARALPHVAWLQVFSTPGH
                     SNGRGAKGKTAAIREPAGWSGDRCCRRRVAAPVFRLNDHVIQRTQDNTHDHRDCLFGL
                     VHRPWDLDLRAESLATPDRHERDNWPRLRHRDGEQLSDRDH"
     gene            complement(1156..1302)
                     /locus_tag="VHD88_03555"
     CDS             complement(1156..1302)
                     /locus_tag="VHD88_03555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20894.1"
                     /translation="MKPERNRSGPAERDSMRTLRLIGATAAFLAVLGIAILVFWFVIR
                     APRF"
     gene            complement(1978..>3040)
                     /gene="ahcY"
                     /locus_tag="VHD88_03560"
     CDS             complement(1978..>3040)
                     /gene="ahcY"
                     /locus_tag="VHD88_03560"
                     /inference="COORDINATES: protein motif:HMM:TIGR00936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004013 - adenosylhomocysteinase activity
                     [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HVS20895.1"
                     /translation="GGAESLLIASNPLSTQDDVAASLVSDCGIPVFAMKGESTDTYRR
                     HVRTALDFKPDIIIDDGSDVVATMIKEEPEHTKKLVGSTEETTTGVVRLQAMQAAGVL
                     TFPSIAVNNAQTKHFFDNRYGTGQSTLDGIIRATNILLAGRTLVVVGYGWCGKGVALR
                     ARGMGSNVVVTEIDPIKAVEAVMDGFRVMPIASAAKIGDIFVTVTGNRHVIDRDHFAS
                     MKDGAIVCNSGHFDLELNLVALRELSEQPVHVRPFVEEYKLTNGRRVYVLGEGRLINL
                     AAAEGHPASVMDMSFANQALSVEYLVKNKGKLEPGVHLLPAEVDQEIAGLKLRALGIS
                     IDSLTSEQLEYLSSWETGT"
BASE COUNT          676 a          885 c          862 g          617 t
ORIGIN      
        1 acagcctgcg cgcgaggatt cgcggaaaca tcgcgcaagt tgcaaacggt tcagaggtgc
       61 ggtggctggt tagcgcggac ggcgcgcgca tttattcata cgagttcgat gatcagcggc
      121 aggttctact caagcccgcg atatttgaat tcgacgcgag cggtgtcgaa ctgaagcgcg
      181 tgacaatggg cgatgaaggg aagtggccga agcccggcga actgctgatt acgagtgctc
      241 gctggatcaa tttggatgct cagcaggtga cacgacaatc cgcggaaagc cttgcaatca
      301 acagcgcgga tccgcccgcg gttttcaaac cgactgtcga tcgcccgtcg cagttgagcg
      361 cagatagact tagtggctac atcaaaactt taagagagag aggtgtggac acggccgcgt
      421 tggcagtcgc tttgcaccgc aagtacgcag aaccgtttag cgtgatcgtg atggcgctaa
      481 tcggaatgcc actcgcgatc tcgtttggcc gaaagagcac ggtcatcgct ttgtgctccg
      541 cggtcgtagt gagtttggct ttctggcttg tgtccggagg atttcagcaa ctcggggaac
      601 acgcgctgct tccaccagca gccgcagcat ggacgccggt agtgatcttt gccggcggcg
      661 ggttgtattt tatttcgcgc gtgagaactt gaagaggtgg acaacaaccc aaacgttagt
      721 gatcgcgatc gctcaattgc tcaccgtccc tatgtcgtag gcgcggccaa ttgtctcgct
      781 catgccggtc cggtgtcgct agcgattccg cacgaagatc cagatcccaa gggcgatgca
      841 caaggccgaa caggcagtca cgatgatcgt gggtattgtc ttgggttcgc tgaataacat
      901 gatcgttgag acgaaataca ggagcggcaa cgcgacgccg gcaacaacga tctccagacc
      961 agccagccgg ttcgcggatc gccgccgtct tgccctttgc tcctcgccca tttgaatgac
     1021 cgggagtcga aaagacctgc agccaggcga cgtgcggaag cgcgcgggcg agcctggcca
     1081 gtgcgaacgc gatcgcgagc agaccgagca ggatcgcctt tacggtgtcc ggaaggaatg
     1141 cttccatagt ttgcgttaga agcgcggcgc ccgaatcacg aaccagaaca ccaggatggc
     1201 aattccgaga acagccagaa acgccgcggt cgcgccaatc agacgaagtg tccgcatcga
     1261 gtcacgttct gccgggccag aacgattgcg ctcaggcttc atgagaactc ccaccgcaaa
     1321 ttagggcaat tatcagcacg atctgcctca gcccccagct ggttagttcg caccgacgcc
     1381 ggccggctcc cgatccatag acatgatctg gccacacgca ccgtgcgtca gtcgtcttcg
     1441 tctcctccga ggaaactcgc ccttcaaccg gcggtatcaa aagcgtgggc ctgttcttaa
     1501 gtttctccgg ccaacgcccg aattaaaccc gccaggagac aactgcatcg tgcggcaagt
     1561 tctcgatgaa aggcaagcta tttccgccac tcctctgaat cacatcgaac tttcatagtt
     1621 acatcaaagg aagcgacata acgccggagt tcaggtggcc gcggcggcgg cacacaacgt
     1681 gggttctatc tttcaagttg agagacgcgc taccgcggct cacctgcaac gaattattag
     1741 accacgcggt gtggcctaag tacgcgctgg agcatcttat acctctcact gcggcgagga
     1801 cgcgatatct gtcagctaaa aagaaagtgc agcgaggcta ctcacaggac tcctcgcggc
     1861 gctcccagcg ccgaagaaaa ggccgcggag cagggaagac tccgcggctc ttgaattttc
     1921 cggcctgcaa cggcaagact gcgcccttgc ttacgcgcgg gcttctgaca caactgttta
     1981 cgtgccggtt tcccaactcg agagatactc gagctgctcc gaagttagcg aatcgatcga
     2041 tattcccagc gctcgcagtt tcaagccggc aatctcctga tcgacttcag cgggaagcag
     2101 atgcacgccg ggttcgagct tgcctttgtt ctttacgagg tactcaactg agagtgcctg
     2161 gttggcaaag ctcatgtcca tgacgctggc cgggtggcct tctgcagcgg cgagattgat
     2221 gaggcggcct tcgcccaaca catatacccg cctgccgttt gtcagcttgt attcttcgac
     2281 aaacgggcgc acgtgaacgg gctgctccga cagttcgcgc agcgctacca gattgagttc
     2341 aagatcaaaa tggccgctgt tacagacaat tgcaccgtcc ttcatcgacg cgaaatgatc
     2401 gcggtcgatc acgtggcgat tcccggtaac ggtaacgaaa atatcgccta tcttagcggc
     2461 agaagcgatc ggcatcactc gaaatccatc catcacggct tcgacagctt tgataggatc
     2521 gatttcggtc acgaccacgt tcgagcccat gccgcgcgcg cgcaaggcca cgcctttgcc
     2581 gcaccagccg tacccgacca cgaccaacgt gcgccccgcc aacaaaatat tcgtggcgcg
     2641 aatgatgcca tcgagcgtcg attggccagt gccataacga ttgtcgaaga agtgtttggt
     2701 ctgcgcgttg ttgaccgcaa tagaagggaa ggtgagcacg cccgccgcct gcatcgcctg
     2761 caaacgaacg acgccggtgg ttgtctcttc agtactgccc acgagcttct tagtgtgctc
     2821 cggctcttcc ttgatcatcg tggcgacaac gtctgacccg tcgtcgatga ttatgtcagg
     2881 tttgaaatcc aacgccgtgc gcacgtgacg ccgatacgtg tccgttgact cgcccttcat
     2941 cgcaaacacc ggaatgccgc aatcggaaac aagcgatgcc gccacgtcat cctgcgtcga
     3001 aaggggattg gaagctatca gcagagattc ggcgccgccg
//
LOCUS       DASZZE010000180         1976 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_5566, whole genome shotgun sequence.
ACCESSION   DASZZE010000180 DASZZE010000000
VERSION     DASZZE010000180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1976)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1976)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1976
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5566"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..404
                     /locus_tag="VHD88_03565"
     CDS             <1..404
                     /locus_tag="VHD88_03565"
                     /inference="COORDINATES: protein motif:HMM:NF013593.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20896.1"
                     /translation="CEYGMSELGPLTFGKKEEQIFLGREIAQHRDYSEETSIRIDSEV
                     RKIVTEQYERATKIIHENRDTLVRLAEVLLEHESLDGVQIRRIVAGLPLEDAETPSTV
                     STEEQPQVKEPTARPLKPILPPITGGTPAPA"
     gene            543..770
                     /locus_tag="VHD88_03570"
     CDS             543..770
                     /locus_tag="VHD88_03570"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HVS20897.1"
                     /translation="MTETAEVVIIGSGIVGSGVAYHLAQAGCTNVLVIEREAHQGKGS
                     TGKSMGGVRAQFSTPVNIQMSRYSNRLLLSL"
     gene            700..1254
                     /locus_tag="VHD88_03575"
     CDS             700..1254
                     /locus_tag="VHD88_03575"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HVS20898.1"
                     /translation="MRSSRRRSTFRCRATRIDFFSRFDEVVGHPADYRAHGYLFCATT
                     ENHLAYLKANRERQIALGVTNVEWVSPEDIVKMVPQLRVDDILGGTFCPTDGFVDPHR
                     VMMGFMLNARERGVRLWLGTQVTGIETEPRLEAALVPPNADLRGGFCSSRRRRSGDSR
                     FHLNPCRRQRCRRLGCAGCEDGRH"
     gene            1184..1600
                     /locus_tag="VHD88_03580"
     CDS             1184..1600
                     /locus_tag="VHD88_03580"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HVS20899.1"
                     /translation="MSTRVVVNAAGAWAAQVAKMAGTELPVKPLRRQLVPTEPFDQLP
                     KRFPMVIDMSTGFHFRREGKGILLAWNDPDETPGFKTDFDPTFVEKILTRAASRVPVL
                     AEAEVNPRRAWAGLYEMTPDSSSGCRAFGSFKTATR"
     gene            complement(1581..1829)
                     /locus_tag="VHD88_03585"
     CDS             complement(1581..1829)
                     /locus_tag="VHD88_03585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20900.1"
                     /translation="MRFNNQPDAANNYCAVGVIRYSCVDKPGGSTAADDAKYDGLLIY
                     LKPSLIGDEPRDVLNYHATSPTFPQETIADQWFSESQF"
BASE COUNT          417 a          521 c          581 g          457 t
ORIGIN      
        1 tgtgcgaata cgggatgtct gaactgggcc cattaacctt cggcaaaaag gaagagcaga
       61 ttttcctggg ccgtgagatt gcgcagcatc gcgactattc cgaagagact tcgattcgta
      121 tcgattccga agtgcgcaag atcgtcactg agcaatacga gcgtgctacg aagatcattc
      181 atgagaatcg cgacacgttg gtgcgtttgg ctgaggttct gctcgaacat gaatcgctgg
      241 acggcgtgca gattcgtcgc atcgtcgcag gcttgccgct tgaagatgcg gaaacaccgt
      301 caacggtgag caccgaagag cagccgcagg tgaaagaacc caccgcacga ccactgaaac
      361 caatcctgcc gccgatcacc ggaggcactc ccgcgccggc gtaaggctgt gtcagtagcc
      421 cgaccgtgag ggagggcgtc tggtttttca gaaagcaagg gcgaacgagt atgttcactc
      481 ttgctttttc tttgcgcaaa atcctttgcg atcttggcgt ctttgcgcga aacttttctt
      541 taatgactga aaccgcggag gtcgtcatca ttggcagcgg cattgtcgga tcaggtgtcg
      601 cttatcatct tgcgcaagcg ggctgcacca atgttctagt gattgagcgc gaggcgcatc
      661 agggcaaagg ctcgactggc aagagcatgg gcggagtgcg tgcgcagttc tcgacgccgg
      721 tcaacattca gatgtcgcgc tactcgaatc gacttcttct ctcgctttga tgaagtcgta
      781 ggtcacccag cggactatcg cgcgcatggt tatcttttct gcgcgacaac tgagaatcac
      841 cttgcttatt tgaaagcgaa tcgtgagcgg caaatcgcgc tgggcgtaac caacgtcgaa
      901 tgggtttcgc cggaagacat cgtaaagatg gtgccgcagt tgcgcgtcga tgacattctt
      961 ggcggcactt tttgtccgac tgatggcttt gtcgatccgc acagagtgat gatgggattc
     1021 atgctgaacg cacgcgagcg tggtgtgcgc ctgtggctcg gcactcaggt gaccggtatt
     1081 gaaactgaac ctcgtttaga ggcggcactc gtgccgccta atgcggacct tagaggcggg
     1141 ttttgctcgt cgcgtcgccg gcgttcaggc gactcgcggt ttcatctcaa cccgtgtcgt
     1201 cgtcaacgct gccggcgcct gggctgcgca ggttgcgaag atggccggca ctgaattgcc
     1261 cgtcaagcct ttgcgtcgtc agctagtacc aacagaaccg ttcgatcaac tgccgaaacg
     1321 ttttccgatg gtcatcgata tgtccacggg ctttcacttt cgccgcgaag ggaaggggat
     1381 tcttttggct tggaacgatc cggatgagac gcccggcttc aaaactgatt tcgatccgac
     1441 ttttgttgag aagatcctga cgcgcgcggc ttcgcgcgtg ccggttctcg ctgaagcaga
     1501 agtaaatccg cgccgtgcgt gggcggggct ttacgaaatg actcccgatt catcaagtgg
     1561 ctgccgagca ttcggtagct ttaaaactgc gactcgctga accactgatc ggcaattgtt
     1621 tcctgcggaa atgtcggact ggtcgcgtga tagttgagca cgtcgcgggg ctcgtcaccg
     1681 atcaaggaag gcttgagata gatgagcaga ccatcgtact tagcgtcatc cgccgcggtg
     1741 ctgccgccag gtttgtccac gcatgaatat cgaatgacgc caaccgcgca gtaattgttc
     1801 gcagcatcgg gttggttatt gaacctcatc gtgcccatgt ccgattggta cgccaaagtc
     1861 cacgcgaatc tgccggatgg ccatcgccag agagtcgtaa gcgtattccg tgtcggtgct
     1921 ggcatcgctg accacgatga agcggcaacg acgcagaatc atttcgtaaa gtccga
//
LOCUS       DASZZE010000181         9220 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_282312, whole genome shotgun sequence.
ACCESSION   DASZZE010000181 DASZZE010000000
VERSION     DASZZE010000181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9220)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9220)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9220
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_282312"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..352)
                     /locus_tag="VHD88_03590"
     CDS             complement(<1..352)
                     /locus_tag="VHD88_03590"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF017238.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HVS20901.1"
                     /translation="MSAIQTDFDRLAVLDSEGWTHNNHYHNFLLRHIRHGCQNALEIG
                     CGTGAFARRLVERAQHVVALDLSPEMIRVARSRSAEFPNIEFHVADAILWNFPATHFD
                     CIATIATLHHLPLRE"
     gene            647..1360
                     /locus_tag="VHD88_03595"
     CDS             647..1360
                     /locus_tag="VHD88_03595"
                     /inference="COORDINATES: protein motif:HMM:NF025690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4388 domain-containing protein"
                     /protein_id="HVS20902.1"
                     /translation="MSDDHKEPIGEVGTALLDAELFIKYGSPDRALKRLRTALERSPG
                     SIPLRERMREVATAHKHPEEAARHCLALASLYIERDDFDAAHDRLLEAKTLDKRISIG
                     TGLEAIRRARHPELHAKPATKAERQRDKPGVTFAGDLAIISVFDAIQAVENSRLTGAL
                     VLTNNAQAGRVLFNDGQIVGAECGKLTAHAAFRQIVEITGGDFDFQKSLQSFPVTIEA
                     ASNTNLILDSLRQVDEAKA"
     gene            complement(1540..1836)
                     /locus_tag="VHD88_03600"
     CDS             complement(1540..1836)
                     /locus_tag="VHD88_03600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20903.1"
                     /translation="MRLPIRLAREGSHLTTDNVFDMLAGFRSEDAEQTSYTREFPFAA
                     TADYYDFLDLILRNDMSELERERLHARSRNYAQFLRLLSAIERAEALNTRVLVD"
     gene            complement(2192..2416)
                     /locus_tag="VHD88_03605"
     CDS             complement(2192..2416)
                     /locus_tag="VHD88_03605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20904.1"
                     /translation="MEVTKALAALQPLYGKGNIEIVTRDGHRVRGIVRSMKTTQALTT
                     PSVKVERADGEIVKVAFTSITEIINHNPPA"
     gene            2582..3553
                     /locus_tag="VHD88_03610"
     CDS             2582..3553
                     /locus_tag="VHD88_03610"
                     /inference="COORDINATES: protein motif:HMM:NF024578.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HVS20905.1"
                     /translation="MQAQQSFSGTGQGGAVVCAQCGSPMPREMRFCRSCGNRLGEGPA
                     EYTETVRFQNAPTAAGIHGTTPFYSAPMTQASAGTLPTYRPRRRVRGMTWIWIALGLF
                     FASGGGLSMLVKNVRDIPRAAAPAASRSYAGVNQFKSAAGGVSFDAVTPPGSPADKAG
                     LVGGDIITSFDGHPVKKESELMDLLRQTPIGKTVEVIYTRDGNFHNTQLTTISEDELN
                     QLDRAYRSRPQGSGHLGFDDSEAERVPVPGTNIYGVQLNDVSQNAPADIAGIKVGDIV
                     IEFDGVPIRTAEELTARDHRTIPYSTVKMVVMRGGERVEIPVKLGKE"
     gene            complement(3562..3888)
                     /locus_tag="VHD88_03615"
     CDS             complement(3562..3888)
                     /locus_tag="VHD88_03615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20906.1"
                     /translation="MTAELIRQIIATYHLHGWELRRALLRTATRAALAASAEVFHDAS
                     IHDAEFDALWFARPSHAGREAWELRLVAEQRYALFEAFEADETEEQREEARSEMENLM
                     REHATR"
     gene            4226..5032
                     /locus_tag="VHD88_03620"
     CDS             4226..5032
                     /locus_tag="VHD88_03620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20907.1"
                     /translation="MPEPANPVHESSPFYVALKRVLDQRARTIEDICPSPDQIAERVL
                     HDYGAMFVGGEDILPPPVCVFTSEDEVSRFQKAAGRAAARIGDAMIELQPAAMSALLK
                     ARAVARAEGLDITPRDGAEAARRSYADTVRLWNSRFLPALDHWTNKGKLNEEQTERLR
                     ALPISEQVAGVLELEKEGLFFSKDLSKSVLYSIAAPGTSQHIAMLAFDANEFLDTRVR
                     ELLARHGWFQTVLSDLPHFTFLGLTEAELPSRGLKSVDVDGQRFWIPNVA"
     gene            5189..7018
                     /locus_tag="VHD88_03625"
     CDS             5189..7018
                     /locus_tag="VHD88_03625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20908.1"
                     /translation="MIRKVLFVISYALFASAAHAQTRPSPARQPQAPSTQSPRSAQFE
                     LAEYGVKLQPDARLIIVMAALDAAGFDPTPAGREPSPFRVLVRKDQSNLDAGLRERMK
                     AFFDRNQLPAPATPADQAARYVSLAYALGPPPLLAAPERSDDLPGGVLEVLDFAPLVR
                     EFYKKSGIDERLVSYMRAYQAEGDRLREPAGNLVRAVLSYLHTRPTLVTNERVRIKSP
                     DQKKNAQTAYTTVEHERRFFIVPDLLGAPGTINFRVITDDYYAIVPEGTDPTSSELGR
                     AYLQYVIDALVLHFNKEVAGRRDQVKQLIKARTKQGAEISPDVFLVVSRSLVAAADAR
                     FEQSMRANAVTERQRQRLQQAKDEAARKAIAAEAESAKAAIADEAIARLAEDYEKGAV
                     LDFYFADQLHDVEVSGFDIANFFADMIAGFDPAREGKRLGEVSAARDRAVAARTAHPR
                     YSLWLIDPSAEARDAADTSRNSGLIRDLSEVEKLLQTRNYEAAEMRVKALLQDYPGDA
                     RLFFTLGQTSSLWARDTTDDDLQAQRLNRALVNYRFAVQAASPETDRVLLSRAHEAMG
                     RILAFLEHNDEAVKEFETAIKIGDVTGGAYKDAMEGKRKLTQP"
     gene            complement(7004..8005)
                     /gene="ligD"
                     /locus_tag="VHD88_03630"
     CDS             complement(7004..8005)
                     /gene="ligD"
                     /locus_tag="VHD88_03630"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF045432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-homologous end-joining DNA ligase"
                     /protein_id="HVS20909.1"
                     /translation="MAADKKKTGGQPKPKKVKRTRQREGPAVSPEEFLALKKPKGDLI
                     LEIEGERVSLTSLDRVYWPSENITKFDLLCYYLRIESSIMPFLKSRPAILQRYPRGIK
                     APMFFQQDLESAPTFIKTAHLINQEGRQLHYAVFTTIGSLLHFVNLGTIEQHPWHSTT
                     KHLSKPDYLMLDLDPKEAPWKNVLEVALVVKEVFDELGLPSFPKTSGSSGIHIYLPLK
                     PKHDYGKIAAVAEGLAQEVAQRAPKIATTQRSLAKRQKQQVYVDAMQNARGKTIAAAY
                     SARAKPNATVSMPLTWKQIEKGVKISDFTIMNVPKLMEKNGDAWGEFFDNRQGLRLR"
     gene            8153..>9220
                     /locus_tag="VHD88_03635"
     CDS             8153..>9220
                     /locus_tag="VHD88_03635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20910.1"
                     /translation="MFPVELWLLIRARIRLLAGGPQLAVLVILLSSASLRAQTTVPAN
                     PLGQTVTNESPNLGAPAEKSLATSPQQQVEQLRSEIERLRVEVERLRVLVEAKEKQPT
                     VSSIPQPGPSAPAAASQSPAAPDNARIAMATKAQGGDLSGAGNLLRTDRITIGGYGDF
                     QFRQSSISERADGGGTLTFQNTRFVLSLAAVLAEKQNIVLNSEIEYEFGSREIDVEQA
                     YVEWKARSQFAFRGGIIVPAIGRFNTYHDSYLNLTTIRPLINQFIIPSAYRDAGIGIR
                     GRFKLPHKMKLTYEADLVNGMQGVNAEGEPTPFSRLLGQSSAAEPGLIAFQAERRRKA
                     VVGRVGFAPIQGLELGVSGYNG"
BASE COUNT         1944 a         2618 c         2664 g         1994 t
ORIGIN      
        1 tctcacgcag cggcagatga tgcagggtcg cgatggtggc gatgcaatca aaatgtgtgg
       61 cgggaaaatt ccacaatatg gcatcggcaa cgtgaaactc aatattcgga aactccgcgg
      121 accgcgagcg tgcgacgcga atcatctctg gcgaaagatc aagtgcgacg acgtgctgcg
      181 cccgctcaac taaacgccga gcgaacgctc ccgtgccgca accgatctcc agtgcgttct
      241 gacagccatg gcgaatgtgc cgcagaagga aattgtgata gtgattgttg tgagtccaac
      301 cttcactgtc gagcactgca aggcgatcga agtctgtttg aatggcggac atgtcagtaa
      361 gcagtgagca gtaagcggtg agcagtatag cagtgcttta ggcggagctc cgaaatgcta
      421 tccctccact gatcggggag ggttagggtg ggggcttagc gcgtcagtca gcccctctgc
      481 cccaacccct ctcccattcg ggagagggag gaacccgccc gctaacgcag gtggtactga
      541 cctctctttc agcgtgatga atgcgctcac gttgggctat cataactcac gccttcagcg
      601 tggtgagccc acccgctaac gcaggtggta ctgacaggat gctttgatga gcgacgatca
      661 caaagaaccg attggcgaag tcgggaccgc tttactcgat gccgagttgt tcatcaagta
      721 tggctcgccg gatcgggcgc tgaagcgttt gcggacggcg ctggaacgca gtccggggtc
      781 gatcccgctg cgcgaacgca tgcgcgaagt cgccacggcg cacaagcatc ccgaagaggc
      841 cgcgcgccat tgtctggcgc tggccagcct ctacatcgag cgcgacgatt tcgacgccgc
      901 gcacgatcgt ctgctggaag caaagacgct cgacaagcgc atctcgatcg gaacaggcct
      961 ggaagcaatt cgccgcgcgc gtcatccgga attgcacgcg aagccggcaa ccaaggccga
     1021 gcgacagcgc gataagcccg gcgttacttt cgccggcgat ctggcaatca tcagcgtgtt
     1081 tgacgcaatt caggcggtcg agaactcgcg tctgacgggc gcgctggtgc tgacgaacaa
     1141 cgcgcaggcg gggcgcgtgc ttttcaatga cggccagatc gtcggcgcgg aatgcggcaa
     1201 gctcaccgcg cacgcagcct ttcgccagat tgtcgagatc accggcggcg atttcgattt
     1261 ccaaaagtcc ttgcagtctt ttcccgtgac gattgaagcg gcgagcaaca cgaatctgat
     1321 tctggatagc ctcagacagg ttgatgaggc gaaggcgtga tcgaagagtc cgcaaagcgg
     1381 acgatcgaga atagcccggc gattattcat cgcttggaaa cgattggcat cgtttcttct
     1441 gcgcgccctt tcagggcgcg ttactatttt cttttgactg atccaggggc ggtgcttcgc
     1501 ttgcccctgg ctactatctg caaccgctac gcggttgtgt cagtccacca gcacgcgagt
     1561 attcaacgct tcggcgcgct caatcgccga cagcagccgc agaaactgcg cgtagttgcg
     1621 gctgcgcgcg tgcaaacgct cgcgttccaa ttcgctcatg tcgttgcgca ggatcaaatc
     1681 gagaaagtcg tagtagtcgg ccgtcgccgc gaacggaaac tcgcgcgtgt agctcgtctg
     1741 ctctgcgtcc tccgaacgaa accccgctaa catgtcgaac acgttgtcgg tggtcagatg
     1801 cgagccttcg cgcgccagcc tgatcggaag tcgcaattca aagaaacgca gactctccgc
     1861 cgtcgtgacg cgccgcagtt ctttggttgc ttcaccgtcg aaaggcgatt ttcactctgc
     1921 agtagctcga cctctgtggc cgactcttca atccatttga gcttatcggc gctcggcgca
     1981 ctgcggtcac cggtggttag aatcgtgtgc aggttgctga ggcggcctta ttcgcgcaga
     2041 tgcttttccg agtagcgcgc acgcaaaacg caaggatgct gaacggtgaa ttcgagggac
     2101 acgtcagaaa acagtaagca gtgggcagtg agcagtaggc agcaggaagg gaagacaagt
     2161 caagaagcag acaggatgtc cgcgctcccg gctaagccgg tggattgtgg ttgatgatct
     2221 cggtgatcga agtaaaagcg accttcacga tttcgccgtc ggcgcgttcg accttcacgc
     2281 ttggcgtggt cagcgcttgt gtggttttca tgctgcgcac gatgccgcgc acgcgatggc
     2341 cgtcccgcgt tacaatttcg atattgcctt tgccgtagag cggctgtagc gccgccaggg
     2401 ctttcgtaac ttccatgtgt tcgtcttaac aaagattcga ctgggtcgtc agactatact
     2461 tggtctgatt caattcgtaa actccggcat cggcgacaat tacacgcaac cattccgatt
     2521 agttcggcgt ataatttcca tagtcgcgcg actattgtct taagactcag gaaagtctgt
     2581 gatgcaggct caacaaagtt tcagcgggac cggccaaggt ggcgcggttg tgtgcgcgca
     2641 atgcggctcg cccatgccca gagaaatgcg tttctgtcgc tcatgtggaa atcggctcgg
     2701 tgaaggcccg gctgaataca cggaaaccgt gcgcttccag aacgcaccga ccgcggcggg
     2761 catccacggc actactccgt tctatagcgc gccaatgacg caagcttctg cgggaacatt
     2821 gccgacctat cgcccgcggc gacgcgttcg cggcatgacg tggatttgga ttgcgctcgg
     2881 tctttttttc gcgagcggcg gtggcttgag catgctggtt aagaatgtgc gagatattcc
     2941 gcgggctgct gcacccgctg cgagccggtc ctatgccggc gtcaatcaat tcaagagcgc
     3001 cgccggcgga gtttcgttcg acgcggttac gccgccgggt tcgccggcgg ataaggccgg
     3061 acttgtcggc ggtgacatca ttacgagctt cgacggccat ccagtaaaaa aagaaagcga
     3121 gttgatggac ttgctgcgac agacgcccat tggcaagact gtcgaagtga tctacacgcg
     3181 cgatggcaac ttccataata cgcaactgac cacgatttcc gaagacgaat taaatcaact
     3241 ggatcgcgcg tatcgcagca gacctcaggg gagcggacac ctgggctttg acgacagtga
     3301 ggcggagcgt gtcccagttc ccggaaccaa tatctacggc gtgcagttga acgatgtcag
     3361 ccagaacgcc ccagcggata tcgccggaat caaagtgggc gatatcgtga ttgagtttga
     3421 cggcgtgccg attcgtacgg ctgaagagct tactgcgcgg gaccatcgca cgattcccta
     3481 cagcaccgtt aagatggtcg tgatgcgcgg cggtgagcga gttgagattc ccgtgaagct
     3541 cggcaaagag tgagttttcg tttatctggt ggcatgttcc cgcattaggt tttccatttc
     3601 gcttcgcgct tcctccctct gttcttccgt ctcatccgcc tcgaaagctt cgaacagcgc
     3661 gtatcgctgt tcggctacta gtcgcagctc ccatgcctcg cggcccgcgt gcgaaggccg
     3721 cgcaaaccac aacgcatcaa actcggcatc gtgaatgctc gcgtcatgga acacttctgc
     3781 actcgcggcc agagccgcgc gcgtcgctgt acgcaacaag gcgcgacgca actcccagcc
     3841 atggagatgg tacgtcgcga tgatttgccg aatgagttct gcggtcatcg ggtcgatgag
     3901 tatagcggag ttgaatcgaa ttcgtggcat ttgcaaccca gagggttgcc gcgaaagtag
     3961 ccggaggtcg tagcgccgcg gagacctccg gtaacgcgtg gttaaatgat gtgcaccctg
     4021 gaggtggtgc cagagcgctc gcttctccgc acccattctg ggtgcgaatt acttttccaa
     4081 tcgcgttccg gtggttttcg accaccggct actatctcgc agcctttcag gctgcattgc
     4141 gagcggctgc gtttggtttc caccaagatt tgatggttgt gaacctcccg gttatgattc
     4201 agcacagccg acaattataa aatcagtgcc tgaaccagcc aatcccgttc acgaatcttc
     4261 gccattctac gtggcgttga agcgcgtgct cgatcagcgc gcccgaacga tcgaagacat
     4321 ttgtccctcg cccgatcaga tcgcggagcg tgtgctgcac gattacggtg cgatgttcgt
     4381 cgggggcgaa gatatcctgc cgccacccgt ctgcgtattc accagcgaag acgaagtgtc
     4441 ccgttttcag aaagcagcag ggcgcgcggc ggcaaggatt ggcgacgcca tgatcgagtt
     4501 acagcccgcg gcgatgtctg cacttttgaa agctcgcgcc gtggcccgcg ccgaaggctt
     4561 ggatatcacg ccgcgtgacg gcgccgaagc cgcgcgacgc agctatgccg acaccgtgcg
     4621 gctgtggaac tcgcgtttcc tgcccgcgct cgatcattgg acgaataaag gcaaactgaa
     4681 cgaggaacaa actgaacgcc tgcgcgcgct gccgatcagc gaacaagtcg caggggtttt
     4741 ggagcttgaa aaagaagggc tattcttcag caaagacctt tcaaagtcgg tgctttattc
     4801 aatcgccgcg cccggcactt cgcagcacat cgccatgctg gcgttcgacg cgaacgagtt
     4861 tcttgataca cgagtgcgcg aacttctcgc acgccacggc tggttccaaa ccgttctgag
     4921 cgatctgccc cacttcactt tcttgggttt gacagaagca gaattgccgt cgcgaggtct
     4981 gaaaagcgtc gatgtcgatg gccagcgatt ctggattccg aacgtggctt gaaacttgcg
     5041 ccggcgtccc ttgtggcatc cggccactca aatccaacat cttagactta agatttggaa
     5101 ttcggaatcc tgctgtcgca ttttgccagc ttgccgcgca tccgttaaca ttcaatcgcc
     5161 cgagaatcat ttaggcaatc cacaactcat gatcagaaaa gtccttttcg taatcagtta
     5221 tgcgctcttt gcgagcgccg cccatgcgca gacgcggccg tcgcctgcgc ggcaacctca
     5281 ggcgcccagc acacaatcac ctcgcagcgc gcaattcgaa cttgcggagt acggcgtcaa
     5341 acttcaaccg gacgcgcgcc tgattattgt gatggccgcg cttgacgccg ctggtttcga
     5401 tcccacaccg gcaggcagag agccgtcgcc gttccgcgtt ctggtgagaa aagatcagtc
     5461 gaatctggat gcgggtttgc gcgaacgaat gaaagcgttt ttcgatcgca accaactccc
     5521 tgcgccggcg acgcccgccg atcaagccgc gcgttacgtt tcgctcgctt acgcgttggg
     5581 accgccgccc ttgttggccg cgccggaacg ctcagacgat cttcccggcg gtgtgctcga
     5641 agtgctcgac ttcgcgccgc tcgtgcgcga gttttacaag aagtcgggaa tcgatgagcg
     5701 tttggtctcg tacatgcgcg cgtatcaggc cgaaggcgat cgtctgcgcg agccggccgg
     5761 gaatttagtc cgcgcggtgc tctcttattt gcacacgcga ccaacgttgg tgacgaacga
     5821 gcgcgtgcga atcaagagtc ccgaccaaaa aaagaacgcg cagaccgctt acacgaccgt
     5881 tgaacatgag cggcgattct tcatcgtgcc cgatctgctg ggcgcccccg gcacgatcaa
     5941 ctttcgagtc attaccgatg attactacgc aatcgtccct gaaggcacgg atccaacttc
     6001 gtccgagcta ggccgcgcgt acttgcagta cgtgatcgat gcgctggtgc tgcactttaa
     6061 caaagaggtc gccgggcgcc gcgaccaggt caagcaattg atcaaagcgc gcacgaagca
     6121 aggcgcggag atttcgcccg acgtattcct ggtggtttcg cgatcgttgg tcgctgccgc
     6181 cgacgcccgc tttgaacaat caatgagagc gaacgcagta accgagcgtc agcgccagcg
     6241 tttgcagcag gcaaaagacg aagccgcgcg caaagcgatc gccgcggagg cagaaagcgc
     6301 gaaggccgca atagccgacg aagcgattgc gcgtttggct gaagattacg aaaaaggcgc
     6361 ggtgctcgat ttctacttcg cggatcaact acacgacgtt gaagtttccg gctttgacat
     6421 cgccaacttc ttcgccgaca tgatcgccgg cttcgatccg gcgcgtgaag gcaaacgcct
     6481 cggcgaagtt agcgccgcgc gcgaccgagc tgtcgcagcg cgcacagctc atccgcggta
     6541 ttcgctttgg ctaatcgatc ccagcgctga agcccgcgac gcggcggata cttcgcgcaa
     6601 ttccggcttg attagagacc tgagcgaagt agaaaagctt ctgcaaacgc gaaattacga
     6661 agcggccgaa atgcgtgtga aagctttact gcaagattac ccaggcgacg cgcgcttgtt
     6721 cttcacgttg gggcaaacgt ccagcctctg ggcgcgcgac acgactgacg acgatttgca
     6781 ggcacagcgc ctgaatcgcg cgctggttaa ctatcgcttc gcggtccagg ctgcgtcacc
     6841 cgagaccgat cgcgtcctgc tctcgcgcgc gcacgaagcg atgggccgca ttctcgcctt
     6901 cctcgagcac aacgacgaag cggtgaaaga attcgagacg gcaatcaaga tcggcgacgt
     6961 gaccggtggc gcgtacaaag atgcgatgga aggaaagaga aaactaacgc agccgtaaac
     7021 cctgtcgatt atcaaagaac tctccccacg catcgccgtt cttctccatc aacttcggca
     7081 cgttcatgat cgtgaagtcg gaaatcttca ctcccttctc gatctgtttc caagtcagtg
     7141 gcattgaaac ggtggcgttc ggtttggcgc gggcgctgta agccgctgcg atagttttgc
     7201 cgcgcgcgtt ctgcatcgca tccacgtaaa cctgctgttt ctgacgcttg gcgagagagc
     7261 gttgtgtcgt ggcaatcttt ggcgcgcgct gggcgacttc ctgggcgagc ccttcggcga
     7321 cggcagcaat ctttccgtag tcatgcttag gtttcagcgg caagtagatg tgaatgcccg
     7381 acgaaccaga ggtctttgga aacgacggca agccgagttc atcgaaaacc tctttcacca
     7441 ccagcgcgac ttcgagcacg ttcttccacg gcgcttcctt cggatcgaga tcgagcatca
     7501 ggtagtcagg cttcgatagg tgcttcgttg tcgaatgcca cggatgctgc tcgatcgttc
     7561 ccagattgac gaagtgcaaa agcgatccaa tcgtcgtgaa aacggcgtag tggagttgcc
     7621 ttccttcctg attgatcaga tgcgccgtct tgatgaaggt tggagcgctt tccaggtcct
     7681 gctgaaaaaa catcggcgcc ttaatcccgc gcggataacg ttgcagaatt gccggcctac
     7741 ttttcagaaa cggcatgatc gacgattcga tgcgaagata gtagcaaagc agatcgaact
     7801 tcgtgatgtt ttcgcttggc caatagacgc gatcgagact ggttagcgag acacgctcgc
     7861 cttcgatctc caaaatcaaa tcgcccttcg gtttcttgag cgcgagaaat tcttccggag
     7921 agacagccgg cccttcgcgc tggcgcgtgc gtttgacttt ctttggctta ggttgacctc
     7981 cggtcttttt cttatctgct gccattcgct tttgcctgca ttttagcact gaacgctgag
     8041 caatctcgtc aggcccgtgt taggcccgtg ttattgacag gccgcaaagc tgaagctata
     8101 ctcctcacca ttatgaaaat gattgtcaat ttcatcagca aggatggggg caatgtttcc
     8161 ggttgagctt tggctcttga taagagcaag aatccggctt ctggcgggcg ggcctcaact
     8221 cgctgttcta gtcatcttac tgtcaagcgc ttcgcttcgg gcgcagacga ccgttcccgc
     8281 aaatccgctt ggccagacgg ttaccaacga gtctcctaac ctgggcgcgc ccgccgaaaa
     8341 gtctttggcg acttcgccgc aacaacaggt tgagcaactg cgaagtgaaa tcgaacgctt
     8401 gcgggttgaa gttgaacgtt tgcgagttct ggtcgaggca aaagaaaagc agccgacggt
     8461 ttcttcgatt ccccagcctg gtccgtcagc gcccgccgcc gcctcgcagt cgcctgccgc
     8521 gcctgacaat gcccggatcg ccatggcgac aaaagcccag ggtggcgatt tgtcgggagc
     8581 gggcaatctc ctgcgaaccg atcggatcac gattggtggc tacggtgatt tccagtttcg
     8641 ccagtcttca atcagcgaac gcgcagacgg cggtggtacg ctgacttttc agaacacgcg
     8701 ttttgtactc agtcttgcgg cggttctggc cgagaagcag aacattgttt taaactctga
     8761 aatcgaatac gagttcggct cgcgagagat cgatgtagag caagcctatg ttgaatggaa
     8821 agcgcggtcc cagtttgcat ttcggggtgg aataattgtg ccagcgattg gccgcttcaa
     8881 cacctatcat gattcatatt tgaatctgac cacgattcgc ccgctcatca atcaattcat
     8941 catcccgtcg gcatatcgcg acgcagggat cggcattcgc ggccgtttca aactgccgca
     9001 caagatgaag ctcacttacg aggcggacct ggtaaatggc atgcaaggcg tgaacgcaga
     9061 aggcgagccg acccctttct cgcggctgct gggccagtct tctgccgctg agcctggctt
     9121 gatcgcgttt caagctgagc gtcgtcgtaa agctgttgtc ggtcgtgttg gctttgcgcc
     9181 gattcagggt ttggaactcg gcgtgtcagg ttacaacggt
//
LOCUS       DASZZE010000182         1908 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_231171, whole genome shotgun sequence.
ACCESSION   DASZZE010000182 DASZZE010000000
VERSION     DASZZE010000182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1908)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1908)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1908
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231171"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..659)
                     /locus_tag="VHD88_03640"
     CDS             complement(<1..659)
                     /locus_tag="VHD88_03640"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: protein motif:HMM:NF003766.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008973 - phosphopentomutase activity
                     [Evidence IEA];
                     GO_process: GO:0009117 - nucleotide metabolic process
                     [Evidence IEA];
                     GO_process: GO:0043094 - cellular metabolic compound
                     salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HVS20911.1"
                     /translation="MENPLFDFNRIALIVLDGAGIGAMPDAEAWGDAGSDTFGHICQS
                     RAVRLPNLQSLGLGNIRSLAGVPSIEKPRGCYGKCALRSNGKDTTTGHWEMAGIILER
                     AFPTYPNGFPQSIIDRFISEAHVPGILGNIPASGTEIIKELGAEHVKTGKPIVYTSAD
                     SVFQIAAHEQVISLERLYEICETARDILRGEHEVGRVIARPFLGEPGSFYRTENRHDY
                     AV"
     gene            complement(700..>1908)
                     /locus_tag="VHD88_03645"
     CDS             complement(700..>1908)
                     /locus_tag="VHD88_03645"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HVS20912.1"
                     /translation="GCFVFAGLCFAFFVAASHARRQDPQQTNQQRPRKVGPTPTPSAT
                     TGTSQQQTNSSAEEVSEGDVVRVETQLVTVPTVITDRTGHPVSGLRAENFAVFEDGKP
                     QRLTNFATADAPFEIALLLDTSGSTRNEIGLIRNAANAFIAALRSGDRVAIVAYNNAP
                     RNGSTVAVVEVLSALTSDRKMLRNAIDNIGTSNGTPFYDSLGRVADQVFREPPREEVR
                     GRRAVVALTDGVDSTSDSGYDDARAKLLRAGVACYFIQVSTEDYVEDRLLKDCQDDGR
                     LTLSAKQLERFRQLFVPQAQKEDYQDFCRLGQFERMDISRQLYNLAGREMNAMAKDSG
                     GKNFATADLQDARAAFAQVANEIGTQYSLGYYPSNKIHNGQFRQIKVELRDVKDANVR
                     AREGYYAPKR"
BASE COUNT          387 a          573 c          524 g          424 t
ORIGIN      
        1 acggcgtaat catgtcgatt ctcagtgcga tagaacgatc ccggctcgcc gagaaatgga
       61 cgcgcaatca cgcggccgac ttcatgctca ccgcgcagaa tgtcgcgcgc agtctcgcaa
      121 atttcgtaga gtcgttcgag cgaaatcacc tgctcgtgcg cggcaatttg aaagactgaa
      181 tcggcggacg tgtaaacgat cggcttgccc gtcttcacat gttctgctcc gagttctttg
      241 atgatctcag tgccgctcgc cggaatgttg ccgaggatcc ccggcacgtg tgcttcgctt
      301 atgaatcgat cgatgattga ttgcggaaaa ccatttggat aagtcggaaa ggcgcgttcc
      361 agaatgattc cggccatctc ccagtgaccg gtcgtcgtgt ctttgccatt cgaacgcagc
      421 gcgcacttgc cataacaacc tcgcggcttt tcgatcgacg gcacgccagc cagcgaacga
      481 atgttaccga ggccgaggct ttgcaggttc ggcagtcgca ccgcgcgtga ctgacagatg
      541 tgcccaaaag tatctgagcc cgcgtcgccc cacgcttccg cgtccggcat cgcgccaatg
      601 cccgcgccgt cgaggacgat caaagcgatg cgattgaagt caaaaagagg attttccata
      661 tatcattttt catttctctg ctcactgctc actgctcact caccgcttcg gcgcataata
      721 tccttcgcgc gcgcgcacgt tcgcatcttt cacgtcgcgc agctccactt tgatctgacg
      781 aaactgacca ttgtgaatct tgttggaggg atagtagccc aaactgtact gcgtgccgat
      841 ttcgttggcg acctgcgcga acgcagcgcg cgcatcctgc agatcggcgg tggcgaaatt
      901 ctttccgcct gagtccttgg ccatcgcatt catctcgcgt cccgccagat tgtaaagttg
      961 ccggctgata tccatccgtt cgaactgtcc gagccggcaa aaatcctgat agtcttcctt
     1021 ctgtgcttgc ggcacaaaga gctgtcgaaa ccgttccaac tgtttcgccg acaaggtcag
     1081 ccgtccgtca tcctggcaat ctttcaataa gcgatcttcg acgtagtctt cggtgctgac
     1141 ttgaatgaaa tagcaagcca cgcccgctcg caaaagcttc gcgcgcgcat catcgtatcc
     1201 cgaatcgctg gtggaatcga cgccgtcggt caacgccaca accgcgcggc gtcctcgcac
     1261 ctcttcgcgc ggcggctcgc gaaaaacttg atcggcgacg cgtcccagcg agtcgtaaaa
     1321 cggcgtaccg ttgctggtgc cgatgttatc gatggcgttg cgcagcatct tccgatcgct
     1381 ggtcagcgca gatagaacct ccacgaccgc gacagttgag ccattccgcg gcgcattgtt
     1441 gtaagccacg attgccacgc gatctccgga ccgcaacgcg gctatgaatg cgttcgcggc
     1501 gttacgaatc aaaccgatct cgttgcgcgt tgatccagaa gtgtcgagta gcagagcaat
     1561 ctcgaacggc gcgtcagcgg tcgcgaagtt cgtaagacgc tgcggcttgc catcttcaaa
     1621 gacagcaaag ttctcggccc gcaaacccga cactggatga ccagtcctgt cggtaataac
     1681 agtgggcacg gtgacaagct gcgtctcaac gcgcacgacg tcgccctcgc tgacttcttc
     1741 cgcggatgag ttcgtttgct gctgactcgt tcctgtcgtg gcgctgggcg ttggcgtcgg
     1801 gccgactttg cgcggccgtt gctgattggt ttgttgggga tcttgtcgcc gggcgtggct
     1861 ggcggcgacg aagaaagcga aacacagccc cgcgaagacg aaacaacc
//
LOCUS       DASZZE010000183         2914 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_102989, whole genome shotgun sequence.
ACCESSION   DASZZE010000183 DASZZE010000000
VERSION     DASZZE010000183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2914)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2914)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2914
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102989"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            104..1387
                     /gene="coaBC"
                     /locus_tag="VHD88_03650"
     CDS             104..1387
                     /gene="coaBC"
                     /locus_tag="VHD88_03650"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR00521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004632 - phosphopantothenate--cysteine
                     ligase activity [Evidence IEA];
                     GO_function: GO:0004633 - phosphopantothenoylcysteine
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0015939 - pantothenate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HVS20913.1"
                     /translation="MIDDRSGEQFSGKRVALGVTGGIAAYKAIEVLRGLQRAGCEVRV
                     AMTRHACEFIQPLTFRALSGFYVVVDDYSPDNPDPIAHITFSQTADLLVVAPATANTL
                     AKFANGIADDFLTSTYLACTAPVLIAPAMNTTMLEHPATQRNLQQLRADGVHIIEPDE
                     GEMACGTIGPGRLSEPERIVAAALEILRQPARKRSQTNDLAQERILITAGATREPIDP
                     VRFISNRSSGRMGFALAEAARDRGAQVTVVAGVTNVVPPQGVRIISATSADEMHRAVI
                     EQAENATIFIAAAAVADYRPVKHSTWKIKKSEADLELKLKRTPDILSEVAGSRRSGQI
                     IVGFAAETDDLLRHAREKLTRKKLDLIVANDVSRVGSGFDSENNAVVILSRDDPQPIE
                     LPLVSKLKAAQRILDEIAKLRRASSAAKTASIDSR"
     gene            1399..2265
                     /locus_tag="VHD88_03655"
     CDS             1399..2265
                     /locus_tag="VHD88_03655"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: protein motif:HMM:TIGR00758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HVS20914.1"
                     /translation="MTLDSTDSELLGLIQEAREYVRYLGELGVEAVELDVRAAAEKST
                     ASLASVTELPARRESPADRTPVKRMLPSTETAQPEPTSQSSLFVVPAPPQQSLTRSSE
                     TLEDIWRDIGDCTRCGLCEGRTQVVNTHGNPKARLMFIGEAPGADEDAQGKPFVGRAG
                     QLLTKIIEAIGLKREEVLIGNVNRCRPPANRQPTLEEAAICRPFLFREIAAAQPDVIV
                     VMGNTALRNLLEVREGITRVRGQFQDFRGIKVMPTFHPAYLLRDPSKKRETWEDLKKV
                     RDYLDSVPPRRD"
BASE COUNT          664 a          816 c          822 g          612 t
ORIGIN      
        1 cctcccggag ccaatccttc atcaagtggt cgccgattat actcgcgcgc tgaactgacc
       61 gcattgcatg agtaattcag cggtgttaca tttcaatttc aagatgatcg acgatagaag
      121 cggtgaacag ttttcaggta aacgtgtggc gctcggcgtt acgggcggca tcgcggctta
      181 caaggcgata gaggttctgc gcggcttaca gcgcgcgggc tgcgaagtcc gagtcgcgat
      241 gacgcgacat gcatgcgagt tcattcagcc gctaaccttc cgcgcgcttt ccggcttcta
      301 cgttgtcgtg gacgattatt cgcctgataa ccccgaccct atcgcgcaca taactttttc
      361 tcagacggcg gatctcctcg tggtcgcgcc ggcgacggca aacacacttg ccaaattcgc
      421 caacggcatc gcggacgact tcttgacttc gacctatctc gcgtgcaccg ctccggtact
      481 gatcgcgccg gccatgaaca cgaccatgct ggagcacccg gcaacccagc gtaatcttca
      541 gcaactgcgc gccgatggag tgcacatcat cgaacctgac gaaggcgaga tggcctgcgg
      601 cacgattggc ccggggcggc tgagcgagcc agaacggatc gttgcggccg ctctggaaat
      661 actgcgacag cctgcgcgta agcgatctca gacgaacgat ctcgcccagg aacgaatctt
      721 gatcacagcc ggcgcgacgc gtgagccgat cgatcctgtt cgcttcatct caaatcgttc
      781 ttctgggcga atgggtttcg cgcttgccga ggccgcgcgc gatcgcggcg cacaagtcac
      841 agttgtcgca ggcgtaacga acgttgttcc gccgcaaggc gtccgcatca tcagtgctac
      901 ttccgctgac gaaatgcatc gcgcggtgat cgagcaagcc gagaacgcga cgatcttcat
      961 cgcagccgcc gcggtggcag actaccgtcc agtgaaacat tccacgtgga agatcaaaaa
     1021 gtccgaggcc gatttggaat tgaagctcaa acgcactcca gacattttga gtgaggttgc
     1081 tggttcgcgt cgcagcggtc agattatcgt cggcttcgcg gccgagactg atgacctgct
     1141 gagacatgcg cgcgagaagc tgacgagaaa gaaactggac cttatcgtag cgaacgatgt
     1201 gtcgcgcgtg ggctccgggt ttgattctga aaacaacgca gtcgtgattc tgtcgcgcga
     1261 cgatccgcag ccgatcgaac tgccgttagt gtcgaagctg aaagccgctc aacgcattct
     1321 tgatgaaata gcgaagctgc gccgagcgag ttctgcggca aaaactgcat ctatcgattc
     1381 acgttgaacc ttcaggccat gacactcgat tccactgaca gcgaattgct cgggttaatt
     1441 caagaggctc gcgaatacgt tcgatatctc ggcgagcttg gcgttgaagc cgtcgagttg
     1501 gacgtccggg cggcagccga gaagtcaacc gcctctctcg catcggtgac tgaattgccg
     1561 gcgcgccgcg aaagcccagc ggatagaacg cccgtcaagc gaatgctgcc atcaacagaa
     1621 accgctcagc ctgaacccac gtcgcagagt tctctgttcg tggtgcctgc gccaccgcag
     1681 cagtcgctaa cgcgatcgag tgagactctg gaagacatct ggcgcgacat cggcgactgc
     1741 acgcgctgcg gtttgtgcga gggtcggact caagttgtga acacgcacgg caacccgaaa
     1801 gcgcgtttga tgtttattgg cgaagctccc ggcgccgatg aagacgcgca gggaaaacct
     1861 ttcgtcggtc gcgccggcca gttgctgacg aagatcatcg aagcgatcgg tttgaaacgc
     1921 gaagaggtac tgatcggaaa cgtcaatcgc tgtcgaccgc cagccaatcg tcagccgacg
     1981 cttgaagaag ctgccatctg ccggccgttt ctgtttcgcg agatcgccgc cgcgcaaccc
     2041 gatgtgattg tcgtgatggg caacactgcg ctgcgcaatc tactggaggt acgcgaaggc
     2101 atcacgcgcg tgcgcggaca gttccaggac tttcgcggca tcaaagtcat gccgactttt
     2161 catcccgcct acctgctgcg cgatccttca aagaaacgcg agacctggga agacctgaaa
     2221 aaggtaagag actatctcga cagcgttcca ccccggcgcg actagcttgt ctgacagact
     2281 tcagtttgtc gtgaccactc ggaaagaaat caatcattac cttttggccc cgaattaggt
     2341 agattctgcg ttctatgagc gtgaccggga ccagtaggtt acgggatggg aatggcttct
     2401 tcgttggcat gtcggagtag cgtaacaggc tgattagttt cgtcaaggcg aatgtgtcga
     2461 cgaatacata caagaacggc agtctcagta acgaccttca tccattcacg atttaccatt
     2521 taccattcac ggcttttaga aggacgcgag gacaagggtc cgaaagaagt tgtgcgcgaa
     2581 gcaccgaata actcgctaca tgcccgcaag cgaaaatagt gcatcggctg tcgtagtctt
     2641 aatcgcctgc cgacattgtg gactccgcac agtttgatcc ctatgcggtt gtcaatgtcg
     2701 cttctgcgat cgaagaggag atttcaaatc ttgaacgcgg tatactgggc cactcggatt
     2761 agccacgcta tgccacagcg gttgaaaata tttcaacgcc tctagaggtt cacattcggt
     2821 cggacggcaa ttgcaagagg acgacttctc ttaagcttca tcttgtttgc tcgcggcaga
     2881 agcgcgaggc aagacagaaa ggtacacaac atgt
//
LOCUS       DASZZE010000184         1518 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_53872, whole genome shotgun sequence.
ACCESSION   DASZZE010000184 DASZZE010000000
VERSION     DASZZE010000184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53872"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            62..1378
                     /locus_tag="VHD88_03660"
     CDS             62..1378
                     /locus_tag="VHD88_03660"
                     /inference="COORDINATES: protein motif:HMM:NF018899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="POTRA domain-containing protein"
                     /protein_id="HVS20915.1"
                     /translation="MRTGFRCDRQIAMAIALLISLCVWSSICMAQRQAHLSKIEVVGL
                     KRLTQEQVIETSGLQIGQAVDPSVLDAASEKLMTSGLFKRLSYRVRTSDGEAIVIFEV
                     EEASRNLPVVFENFVWFSDDEIARAIRQDVPFFDGTAPEAGGTADKIVVALQRLLNAK
                     KIPGRAEFMLSSNEGGKQELLFTVRGVKIPICSLSFPGAAAISEADLIRASQPLLKSD
                     YSKKDIPGFAHYTLFPLYRHIGHLRATFQEPTAKLEADQCPGGVAVTIQVDEGVAYSW
                     DAAEWNGNQALTADELSTAFAMKAGEVADDRKIIAGMKAVRKLYGRKGYIGLRYNESV
                     SFDDAARRVAYRFTFSEGPQYYMGNLIINGVAPEDSQRLKEKWRMAQGAVFDESYMED
                     FSKTDGQEVIGKIVFARSRSGTRTRIDYETKPDEQKQTVDVIITFK"
BASE COUNT          362 a          399 c          431 g          326 t
ORIGIN      
        1 gacaatatag aatcgggtgc ttctggggaa gatgctttaa gcgcgcgtca ggagtcaaac
       61 gatgagaacc ggttttcggt gcgacagaca aatcgcgatg gccatagctt tgctgatctc
      121 gctgtgcgtg tggtcttcga tctgcatggc acaacggcag gctcatctga gcaagatcga
      181 agtcgttggt ctaaagcgtc tcacccagga acaagtgatc gaaacgagcg gactgcaaat
      241 aggtcaagca gtcgatccca gtgttctcga tgcggcgtca gaaaaactga tgacttccgg
      301 cctgttcaaa agactgagtt atcgcgttcg cacctctgac ggtgaagcaa tcgtaatctt
      361 tgaagtcgaa gaagcgagca ggaatctacc cgtggtgttc gagaacttcg tctggttcag
      421 cgacgatgaa atcgcgcgcg cgattcgtca ggatgttcct ttctttgacg gcacggcgcc
      481 cgaagcgggc ggcactgcgg acaagatcgt cgtagcgttg cagcgactgc tgaatgccaa
      541 aaagattccg gggcgcgcag agttcatgct ttcttcaaat gaaggcggca aacaagaact
      601 cctcttcacc gtcagaggcg tgaagattcc gatttgctcg ctaagctttc ccggcgcggc
      661 ggcaatttcc gaagctgact tgatcagagc ttcgcagccg ctgctcaagt cggactactc
      721 aaagaaagac atccccgggt ttgctcacta cactttgttt ccgctttatc gtcacatcgg
      781 ccatctgcgc gccacgtttc aggaaccaac tgcaaagctc gaagcggatc aatgcccggg
      841 cggagtggcc gtgacaattc aagttgacga aggcgtcgcc tattcgtggg acgcagccga
      901 gtggaatggc aatcaggcat tgaccgctga cgaattgtcc accgcgttcg ccatgaaggc
      961 cggcgaagtc gccgacgacc gcaagatcat cgcgggcatg aaggcggtgc gaaaactcta
     1021 cgggcgcaag ggctatatcg gcctccgtta taacgagtca gtttccttcg acgatgcggc
     1081 ccggcgcgtc gcttatcgat tcacgttcag tgaaggcccg cagtattaca tgggcaatct
     1141 gatcatcaat ggcgttgcgc cggaagattc gcagcgattg aaagagaagt ggcgaatggc
     1201 tcagggcgcg gtgtttgatg agtcgtatat ggaagatttc agcaagactg atgggcagga
     1261 agtcatcggt aaaatcgtgt tcgcgcgctc gcgcagcggc acccgcacca gaatcgacta
     1321 cgagacaaag cctgacgagc aaaagcaaac cgtcgatgtt atcatcacct tcaagtgagc
     1381 tgagttcttt gctcaaacaa gtcgccgacg acttcaaagc caggcctttc attcctcatc
     1441 gcttcttcaa acacggcgac gcgcaaacga tcggcgcgca tttctggccg agtcggtttc
     1501 gtctgcgcga ccgaactg
//
LOCUS       DASZZE010000185         4381 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_186302, whole genome shotgun sequence.
ACCESSION   DASZZE010000185 DASZZE010000000
VERSION     DASZZE010000185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4381)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4381)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4381
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_186302"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            34..2175
                     /locus_tag="VHD88_03665"
     CDS             34..2175
                     /locus_tag="VHD88_03665"
                     /inference="COORDINATES: protein motif:HMM:NF023295.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction enzyme endonuclease
                     domain-containing protein"
                     /protein_id="HVS20916.1"
                     /translation="MYKNFARCGAVTEPEKTVRAQSSEHLRQLLGENHRYVFTLIQKF
                     RAEPGQIHAMVSDRPDIIVITDEAHRSQYDQLALNMRNALPNAAFIGFTGTPLMAGEE
                     RTKEVFGDYVSIYNFKQSVDDHATVPLFYENRIPELQLVNEILNDEMAELIEDAGLSE
                     DQEKKLEREFTREYHLITRDDRLERVAEDIVAHFTGRGFQGKAMVISIDKATAVRMYD
                     RVQKYWNRYLGELSAKLATCEETERSELEDKIKFMRETDMAVVVSQSQNEVEDLAAKG
                     ANIVPHRRRMNKEDLDEKFKDDKDPLRIAFVCAMWITGFDVESCSTIYLDKPMKNHTL
                     MQTIARANRVFPDKVNGLIVDYVGVFRNLQKALAIYAGSPSGLAADEMPVKNKQALVE
                     MLREAIAELTEFCKGFGVDPGRIQAAPAFERVKLVDDAVEATIINDESKKRYLSLESN
                     VSKLFKAILPDFSANEFSPTCGLFRFIADKIRADAPEIDISEVMAGVDDLLDRSVAAE
                     GYVIHDAPRLVDLSKIDFDALQKRFAKGRKRIEAERLKTSLSVKLATMILQNKTRMDF
                     LEKFQQMIDEYNSGAINVEVFFARLVGFTHELDEEEKRTIAEQLSEEELAIFDLLTKP
                     ATSMTKKETEQVKKVARELLAKLKQEKLVLDWRAKQQARAAVQLTIQDSLEALPRSYS
                     RPIYAQKCELIYQHVYDSYFGSGQSVYSQAA"
     gene            complement(2178..2393)
                     /locus_tag="VHD88_03670"
     CDS             complement(2178..2393)
                     /locus_tag="VHD88_03670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20917.1"
                     /translation="MAILIALGRGGAVFGLVLLVAALLRRLIMLVGFLLALVKFAIVI
                     AFVLVIVMIALAIFRDRSRRKHEAEDI"
     gene            complement(2495..3196)
                     /locus_tag="VHD88_03675"
     CDS             complement(2495..3196)
                     /locus_tag="VHD88_03675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20918.1"
                     /translation="MCQACDHRIRGFPFCQDCILAGVEMLRYQQSRPTSASVIRRKTS
                     PFVATLLSFFVPGLGAAYNGQTSKAIVHFAIFASFFQMAVVTDGVTFFVLGVAGTWLF
                     AAVDACRTAQLMRAGLAPDAEEDAITRQLYGNPLAWGATLVVLGSMFLAHTLLGVQFP
                     MRRALPVALVILGAYILFDYLKRQRRREDLRLFDASKPPPSVVSSGQLGQGGFGTGEF
                     TTHVRSRQLGSARFK"
     gene            complement(3350..4207)
                     /locus_tag="VHD88_03680"
     CDS             complement(3350..4207)
                     /locus_tag="VHD88_03680"
                     /inference="COORDINATES: protein motif:HMM:NF024881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma factor"
                     /protein_id="HVS20919.1"
                     /translation="MLCHEFEEQLTDYLDGALPVETHRAFAEHAMRCPVCHDLLSEVK
                     NTLLSCSSSEAPPAGVGLEARILLKTAPETTITCADFEERLTDYLDGFLLAPLYHRWE
                     RHAALCADCSELPGEVVRSIGACYTYLQEELPVPVGLEARILQQMLGTATARQIRPSA
                     IARLAEWLRGALDPIVSPQLASVATMLLVSVFVLTNTVSTDGSVGGIYHASLQLAERT
                     AGTATKKSGLPAEVKQLAGSVNDLIGGDETGNTNDANKNQNTSNQNSAPQSTQGNAKP
                     KAESSQDKH"
BASE COUNT         1074 a         1167 c         1226 g          914 t
ORIGIN      
        1 atcgtcaccg accgggacga tcttgacgat caaatctata agaactttgc tcgttgcggc
       61 gcagtaacag aacccgaaaa gactgttcga gcccaaagca gcgaacatct gagacaactt
      121 ctcggcgaaa accaccgcta cgtcttcacg ctgattcaaa agtttcgcgc tgagcccggc
      181 cagatccacg cgatggtctc ggatcgcccg gacatcatcg ttattacgga cgaagctcat
      241 cggagccagt acgatcaatt ggcgctgaac atgagaaacg ctttaccgaa cgcggcgttc
      301 atcggtttta cgggaacgcc actaatggcc ggcgaagaga gaaccaaaga ggtcttcggc
      361 gattacgtca gcatctacaa cttcaaacaa tcggtggatg accatgcgac cgttccactc
      421 ttttatgaga accgcattcc cgaactgcaa ttggtcaacg agatcctgaa tgacgagatg
      481 gcagagttga tcgaagacgc gggtttgagc gaagaccagg agaagaagct ggagcgtgag
      541 tttacgcgcg agtatcacct aattacgcgc gacgaccggc tggagcgtgt cgccgaagat
      601 atcgtggcgc atttcacagg tcgtggcttt cagggtaagg cgatggtcat atcgatcgac
      661 aaagccacgg ccgttcgcat gtatgacagg gtgcagaagt attggaatcg gtacttgggc
      721 gagttgtcag caaagctggc gacatgtgag gaaaccgaac gaagcgagct tgaagacaag
      781 atcaagttca tgcgtgaaac cgacatggct gtggtggttt cgcaatcaca aaatgaggtt
      841 gaggatttgg ctgccaaagg cgcgaatatt gttcctcacc ggcggcgcat gaacaaggaa
      901 gacctcgatg agaaattcaa ggacgataaa gatccgctgc gaattgcctt tgtctgcgcg
      961 atgtggataa cgggcttcga tgtcgaaagc tgttcgacca tctatctcga caagccgatg
     1021 aagaaccaca ccttgatgca gacaatcgcg cgcgccaacc gggtattccc ggacaaggtc
     1081 aatggcttga tagttgatta cgtcggcgtc ttcagaaacc tgcaaaaggc acttgctatt
     1141 tatgcgggat cgccgagcgg attagctgcc gatgaaatgc cggtcaagaa caagcaagcg
     1201 ctcgtcgaaa tgttgagaga ggcgattgcc gaactcacgg agttttgcaa aggcttcggt
     1261 gttgaccccg gacgaattca ggcggcgcct gcctttgaac gagtgaaact agtcgatgac
     1321 gctgtagaag caaccattat caacgacgaa tcgaaaaagc gttatctctc actggaatca
     1381 aacgtgtcca aactctttaa ggcgatactc ccggactttt cggcgaatga gttttctccc
     1441 acatgcgggc tcttcagatt catcgccgat aagatccgcg ctgacgcgcc ggagatcgat
     1501 atttctgaag tcatggcggg cgtagacgac ttgctagatc gctcggtcgc cgcagaggga
     1561 tacgtgattc acgatgctcc tcggctggtt gatctaagca agatcgactt tgacgcattg
     1621 cagaagcgct ttgccaaagg tcgcaagcgg attgaggcag agagactcaa gacttcgttg
     1681 agcgtcaagc tcgcgacgat gatattgcaa aacaagactc ggatggattt tttagagaag
     1741 tttcagcaga tgatcgacga atacaactcg ggagcaatta acgttgaggt cttcttcgca
     1801 cggctggttg ggtttacgca cgagctagac gaggaagaga agcgcacgat tgccgagcag
     1861 ctttcggaag aggaattggc aatctttgac ttgctaacga agcccgcaac gtcaatgacc
     1921 aaaaaagaga cggagcaagt caagaaagtc gcccgcgaac tactcgctaa gttgaaacag
     1981 gagaagctgg tgctcgattg gcgcgcaaag caacaggcaa gagcagcggt tcagctcacg
     2041 atccaagatt cactcgaagc attgccacga tcttactcgc gacccatata tgctcagaag
     2101 tgtgagctga tttaccaaca cgtttacgat tcctacttcg gtagcgggca gagtgtgtac
     2161 tcgcaggctg cctagtctca gatgtcttca gcttcgtgct tacgccgcga gcggtcgcgg
     2221 aagatggcga gcgcgatcat tactatcacc aacacaaagg cgatgacgat ggcgaacttg
     2281 accagcgcaa ggagaaagcc gaccagcatg atgagtcgtc gaagaagagc ggcgacgagt
     2341 aggacaagtc caaatactgc gccgccgcga cctaaagcta ttaggattgc cataagtacc
     2401 tcagtaagca gtagacagta ggtagtagat agtagtcagt aggacagcgc cggcaagatg
     2461 tcggcgaacc gcacgcagga tgcgtgcgct cccgctactt aaagcgcgcc gagccaagct
     2521 ggcgcgacct cacgtgtgtt gtgaactcgc ccgtcccgaa tcccccctgt ccgagctgcc
     2581 cgctcgaaac aactgatggc ggcggcttgc tcgcgtcaaa gagccgcaaa tcctcgcgac
     2641 gacgctggcg cttcaaataa tcgaacagaa tgtaagcgcc gagaattacg agcgctaccg
     2701 gaagcgcgcg gcgcatcgga aactgcacgc caagcagcgt gtgcgccaga aacattgatc
     2761 ccaaaacgac gagcgttgcg ccccaagcta atggattgcc gtacaactga cgcgtgatgg
     2821 cgtcctcttc ggcatccggc gccaggcccg cgcgcattag ttgcgctgtg cggcaggcat
     2881 cgacggcggc gaataaccac gttccggcga cgcccagaac aaagaacgtg acaccgtcag
     2941 tgacgactgc catctgaaaa aagctggcga agatcgcgaa gtgcacgatc gctttggaag
     3001 tctgaccgtt gtaggccgcg ccgagaccgg gaacaaagaa cgaaagcagt gtagctacga
     3061 atggcgaggt ctttcggcgg atcacactcg cgctggtcgg acgtgattgc tgataccgga
     3121 gcatctcgac gccggcaaga atgcaatcct ggcaaaacgg aaacccgcga atgcgatgat
     3181 cgcacgcctg acacaaaggc cgcctgcatt ggctgcattg cacggtaccg ggattcttag
     3241 gatggtaatt gcaggtcatc gttcgttact gaattatttt gagctatcaa cttacccacc
     3301 cgctaacgca ggtggtaccg acttaagcgg gctactgttc cgaaccgtct caatgcttgt
     3361 cttgagacga ttcggctttg ggctttgcgt tgccctgtgt gctttgcggc gcgctgtttt
     3421 gattcgatgt attctgattc ttgttcgcat cgtttgtatt cccagtttcg tctccgccga
     3481 tcagatcgtt tacgctgccg gccagttgct taacctccgc agggagtccc gatttcttcg
     3541 tcgcagttcc tgcggttcgc tcagccaact gcaagctggc gtgataaatt ccgccaaccg
     3601 atccgtcggt cgagacggtg ttcgtcagaa cgaatactga gacgagcagc atcgtcgcta
     3661 ccgaagcaag ctgtggcgac acgattggat cgagcgcgcc gcgcaaccac tcggccagcc
     3721 gcgctattgc cgacggacga atctgtcgcg cggttgcggt gccgagcatc tgctgcaaga
     3781 ttcgcgcttc gaggccaacc ggaaccggca gttcttcttg caagtacgtg taacacgctc
     3841 cgatcgaacg cacgacttcg cccggcagtt cgctgcaatc agcgcacagc gcggcgtgac
     3901 gctcccacct gtggtaaagc ggagccaaaa ggaaaccgtc aagataatcg gtgaggcgct
     3961 cttcgaaatc cgcgcaagtg atcgtcgttt cgggcgccgt cttaagtaga attcgcgctt
     4021 ccaaaccgac acctgccggc ggcgcttcgg atgacgagca ggagagcaga gtgtttttca
     4081 cttcgctcag cagatcgtga cacacgggac agcgcatcgc gtgttcagcg aacgcgcgat
     4141 gagtctcgac cggaagcgcg ccgtcgagat aatcggtcag ttgctcttca aattcgtggc
     4201 aaagcatttt tctcttagtc tcgcttcctc ttgtgcagct cgtgttggtt tgagccctcc
     4261 ctcacggtcg ggctactgcc ccgctactta cgcgttcatc tccactacac gcatacgacg
     4321 caagatcttc gcaagttcaa tgcggccgcg attgatccgc gacttgaccg tgccttcggg
     4381 t
//
LOCUS       DASZZE010000186         2906 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_168256, whole genome shotgun sequence.
ACCESSION   DASZZE010000186 DASZZE010000000
VERSION     DASZZE010000186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2906)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2906)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2906
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168256"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1060
                     /gene="menC"
                     /locus_tag="VHD88_03685"
     CDS             <1..1060
                     /gene="menC"
                     /locus_tag="VHD88_03685"
                     /EC_number="4.2.1.113"
                     /inference="COORDINATES: protein motif:HMM:TIGR01928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA];
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HVS20920.1"
                     /translation="FFETSFGRTTERRIVLVRVIDRDGAEGWGECTAGEGPFYSDEWT
                     ETAWPTLKDFLASMVVGHEVENASAIGDLLKKVRGHRMAKGAIETACWDLEAKRAGVP
                     LWKHLGGVHAEISCGVSIGIQDSPEALLEKIEKELADGYQRIKIKIKPGWDLEIVRRV
                     RERFPEIGLMGDANSAYTLADAPLFRALDEFKLMMIEQPLRYDDMFDHAELQKRIKTP
                     VCLDESIKTPEDARHAIDLGACRVINVKLGRVGGHAQAKRVESIARERGIPVWCGGML
                     ESGIGRAHNIAMATLEGFTLPGDVSASARYWEEDIIEPPVTITSRGTIVAPDKPGIGF
                     EVNRTRIDRLTVRSARVS"
     gene            1251..2420
                     /locus_tag="VHD88_03690"
     CDS             1251..2420
                     /locus_tag="VHD88_03690"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20 family metallopeptidase"
                     /protein_id="HVS20921.1"
                     /translation="MPIEITRENMNALRDHLVARQQELIALTRALVETESPSGDEAGS
                     RAVVSLLAAAAQNISAVSSVERITSEDFGEHLRICAFTGENDKPPIVILGHTDTVHPR
                     GAIKERPWRTEGNRIHGPGIFDMKANCALALEVLRACEATGALPQSPITILLTCDEES
                     GSPSGRPLVEAEAKRARAVLVLEPPASGGRVKTARKGTGMFTIEVHGRAAHAGLDPEK
                     GVSALLELARQTIRLHNLNDPAAGTTVTVTVAQGGTHSNVVPAEARAEIDMRFSSAEA
                     GKRIENAIINLKAFDERAQLIVSGGINRPPLERTEKVRTLYEQARRIAALLDFELGEA
                     SVGGASDGNFVGALGVPVLDGLGIEGDGAHAADEHIIVDNIPLRGALLAGLLATL"
     gene            2533..>2906
                     /locus_tag="VHD88_03695"
     CDS             2533..>2906
                     /locus_tag="VHD88_03695"
                     /inference="COORDINATES: protein motif:HMM:TIGR00633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HVS20922.1"
                     /translation="MKIATWNVNSIIARLPHVTRWLEAAQPDVLCIQETKCTDDKFPL
                     LELQATGYDCIIFGQQAYNGVAILSRAGCTNVQRGYPEDDASSHARLLAADIAGIRVV
                     NVYIPNGQMVGSEKYQFKLHWL"
BASE COUNT          657 a          790 c          881 g          578 t
ORIGIN      
        1 tttcttcgaa accagtttcg ggcgcactac tgaacgccgc atcgttctcg tgcgggtcat
       61 cgatcgtgac ggcgcggaag gatggggcga gtgcacggcc ggcgagggtc cgttctattc
      121 tgatgaatgg acagaaacgg cctggccgac actcaaagat tttctggcgt cgatggtcgt
      181 tggtcacgaa gttgagaatg cctccgccat tggcgatttg ctgaagaaag tgcgcggcca
      241 tcgcatggcc aaaggcgcga ttgaaactgc gtgctgggac ctggaagcaa agcgcgcggg
      301 cgtgccgttg tggaaacacc tgggcggggt gcatgccgag atctcttgcg gcgtctcgat
      361 cggcatacag gattcgccgg aagctttgct ggaaaagatc gagaaagagc tggccgacgg
      421 ctaccagcgc atcaagatca agatcaagcc gggctgggac ctcgagattg tgcggcgagt
      481 ccgcgaacgc tttcctgaga ttggtctgat gggcgacgcc aattcggctt acacgctcgc
      541 ggacgcaccg ctgtttcggg ctctcgatga attcaagctg atgatgatcg aacagccgct
      601 ccggtacgac gacatgttcg atcacgcgga gttgcaaaag agaatcaaga cgccagtttg
      661 tcttgatgaa tcaatcaaaa cgccggagga tgcgcgacac gcaatcgacc ttggcgcttg
      721 ccgcgtcatc aacgtaaagc tcgggcgcgt cggcgggcac gcgcaggcga agcgagttga
      781 aagcattgca cgcgaacgag ggattcccgt atggtgcggc ggtatgttgg agtcaggcat
      841 tggccgcgcg cataacatcg ccatggctac gttggaagga ttcacgctgc cgggcgacgt
      901 ctcggccagc gcgcgttatt gggaagaaga catcattgag ccgccggtga cgattacttc
      961 gcgagggacg atcgtggcgc cggacaaacc gggaattgga tttgaagtta atcgcacgcg
     1021 catcgatcgc ttgactgtgc gatcagcgcg ggtcagctaa cagtttactg aaaaagttat
     1081 cggcgcgagt tgggttggcg atttctctgt gcgacctctg tgatttctcc gtgtctctgt
     1141 ggtgaaatcc gcagaagaca ctcaccacag aggcacagag atcgcacaga gaaccacaga
     1201 gaggatctgg taacccaatc gacgcatcat tcggcaatca tctaagacaa atgccaatcg
     1261 aaatcacacg cgaaaacatg aacgcgctgc gtgatcatct tgttgcgcgc caacaggaac
     1321 tgatcgcgct tacgcgcgcg ctggtcgaga cagagtcgcc ttcgggggac gaggctggga
     1381 gtagagccgt cgtttctttg ctggccgccg ccgctcagaa catcagtgcc gtcagttcag
     1441 ttgagcgaat aacgagtgaa gacttcggcg agcaccttcg catttgcgct ttcaccggag
     1501 agaatgacaa gcccccgatc gtaattctcg gtcacactga taccgttcat ccgcgcggcg
     1561 cgattaagga acggccgtgg cgcacggaag gtaatcgcat tcatggacca ggcatctttg
     1621 acatgaaagc caactgcgcg ctcgctctcg aagttctgcg cgcttgcgaa gcgaccggag
     1681 cgctaccgca atctccgatt acgatcttgc tgacttgtga cgaagagagt ggaagcccca
     1741 gcggtcgtcc tctggtcgaa gcggaagcga agagagcgcg cgcggtgcta gtgctggaac
     1801 ctccggccag cggtggccga gtcaagacgg cgaggaaggg aactggaatg tttacgatcg
     1861 aagttcatgg tcgcgccgct cacgctggtc tcgatccgga aaaaggtgtc agcgcactgc
     1921 tagaacttgc ccggcaaacc atcaggctgc acaaccttaa cgatccggcc gctgggacga
     1981 ccgtcacggt cacggtagcg caaggtggca cgcattcgaa cgtcgtgccc gccgaagcgc
     2041 gcgctgaaat tgacatgcgc tttagttcag ccgaagcggg taagcgcatt gaaaatgcga
     2101 ttatcaatct gaaggcattc gacgaacgcg cgcaactgat cgttagcggc ggcatcaacc
     2161 gtcccccact tgagcgcaca gagaaagttc gcacacttta cgaacaagcg cggagaatcg
     2221 cggcactcct cgatttcgaa ctcggtgaag ccagcgtggg cggcgcctcg gatggaaact
     2281 ttgtcggcgc gctgggcgtg cccgtgctgg acggattagg cattgagggt gacggcgcac
     2341 acgcggcgga cgaacacatt atcgtcgata acattcccct gcgcggtgcg ttgctggctg
     2401 gattgctggc gacactgtga gtcaatccag aacaatcgaa tcgtttagac gcgggacttg
     2461 tcccgcgttg tggttttgct agaaaggccg gacaagtccg gcctctaaac ggaaattctt
     2521 tcagggatcg acatgaaaat cgccacttgg aacgtcaact cgatcattgc tcgcttgccg
     2581 cacgtcacgc gatggctgga agccgcgcaa cccgacgtgc tctgcattca ggaaacaaag
     2641 tgcactgatg acaagtttcc gctgctcgaa ttgcaagcga ccggctatga ctgcatcatc
     2701 ttcggccagc aggcctacaa cggcgtcgcg attctatctc gcgccggatg tacgaacgtt
     2761 cagcgcggtt atcccgaaga cgacgcgtcg agccacgctc gattgctcgc ggctgatatc
     2821 gccggcattc gcgtcgtcaa cgtttacatt cccaacggcc agatggtcgg ctcagaaaag
     2881 tatcagttca aacttcactg gctgaa
//
LOCUS       DASZZE010000187         2563 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_22473, whole genome shotgun sequence.
ACCESSION   DASZZE010000187 DASZZE010000000
VERSION     DASZZE010000187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2563)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2563
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22473"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            106..843
                     /locus_tag="VHD88_03700"
     CDS             106..843
                     /locus_tag="VHD88_03700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20923.1"
                     /translation="MKKSILLFVIGLLLGAVASAYYLGAPRTRNSPGAPIRPPDRSGE
                     TSGTVVVTIDEKFFDALLGTIFQKLGPPQLQLSRNSTDDPMQRAVFQSSCPDTVVLLA
                     EGDNVKTGVRFTGGKVTAPLAFNGSYSILSKCVQFKGTGRATVDLSFDQEKQTVFGQL
                     SVEEVTLDDVSPIVSSLVTAFVRKTIAERLNPFEVLRVSQLALSLPIQASGGSVKAHV
                     KDVRAEVQEGSLRLYLTYDFTAERNAG"
     gene            complement(900..1355)
                     /locus_tag="VHD88_03705"
     CDS             complement(900..1355)
                     /locus_tag="VHD88_03705"
                     /inference="COORDINATES: protein motif:HMM:NF021505.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2231 domain-containing protein"
                     /protein_id="HVS20924.1"
                     /translation="MKTRASFAGEPIHPMFVHYPIALWTTSVITDLIFYFCRNTSLVL
                     ISKFLIAAGIVGAILAAIPGIVDWTTITDPVVKKTANWHARLNIAALLIFGTSLYLRM
                     KNHGAPLVGFHLKIPFVVSVAGWMLMAISASLGGKLVYEHRMGVKEEGS"
     gene            1633..2115
                     /locus_tag="VHD88_03710"
     CDS             1633..2115
                     /locus_tag="VHD88_03710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20925.1"
                     /translation="MTMKLCAMLLLAMALGACESGSTTEGTSPAKTNANPSTSANPSP
                     NVLQQEDFGRLLVWLDPDPERVGAIYERIRWRLIAILASRGCALAEELADETIDRVAR
                     RLCFRATERRQSRAVRTQIPVNCRPQTETEGLDSVARSFRLRLDGSNHSAGRCESLDR
                     "
     gene            2175..2390
                     /locus_tag="VHD88_03715"
     CDS             2175..2390
                     /locus_tag="VHD88_03715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20926.1"
                     /translation="MIFAVLIGTVWLVVKEPRIKEGIKAASSTGARPFLLRARPAWLG
                     ILQTHRQSPNTKQLLHRCLRMNRRPHL"
BASE COUNT          593 a          751 c          677 g          542 t
ORIGIN      
        1 cgatgcgttg accagcgcag tcgccgctgt cttgaaagcg atgatggcta atgcatcaaa
       61 cccagccgct tcgcccgcgc catctgcttc acctaaatca aactgatgaa gaaaagcatt
      121 ctgctcttcg taatcggact actgctcggc gcggtagcgt cagcttacta tctcggcgcg
      181 ccgcgcacgc gaaattctcc cggcgcgcct attaggccgc ctgaccgcag cggtgagacg
      241 tcgggaaccg tggtggtgac tatcgacgaa aagttcttcg atgctttgct cggcacgatc
      301 tttcaaaaac ttggaccgcc acaactgcaa ctgtcacgga actccactga cgatccaatg
      361 cagcgcgcgg tgttccaaag ttcctgccct gacacggttg tgctcctcgc cgaaggcgac
      421 aacgtcaaga ccggcgtccg gtttaccggc ggcaaagtca ccgcgccgct cgctttcaat
      481 ggcagctata gcattctctc caagtgcgtg cagttcaaag gcacgggccg cgcgaccgtc
      541 gatctttcct tcgatcaaga gaagcagacc gtttttggcc agttgagtgt cgaggaagtg
      601 acgcttgatg atgtgtcgcc aatcgtgagc agtctggtca cggcttttgt gcgcaagaca
      661 atcgccgaac gcttgaatcc gtttgaagtg ctgcgggttt cgcaactcgc gctttccttg
      721 ccgattcaag caagcggtgg ttcggtgaaa gcacacgtga aagacgtgcg cgccgaagtg
      781 caggaaggct cgctgcgttt gtatctcact tacgatttca ccgctgaacg aaacgccggg
      841 tgattccgaa actgcgagcg acagcgagcg ggcattacca cagactaaag tctgtgccgc
      901 taacttccct cttctttaac acccattcga tgttcgtaaa ccaacttgcc gcccagactg
      961 gccgagatag ccatcagcat ccaccccgct accgaaacta cgaacggaat cttcagatga
     1021 aagccgacca gcggcgcgcc gtgattcttc atgcgcagat agagacttgt gccaaagatt
     1081 aacagcgccg cgatattcaa acgcgcgtgc cagttggcgg ttttcttcac caccgggtcg
     1141 gtaatcgtgg tccaatcaac gatgcccgga atcgcggcca gaatcgcgcc cacgatgccg
     1201 gcggcgatca aaaacttcga gatcagaacc aaactcgtgt ttcgacagaa gtagaaaatc
     1261 aaatccgtga tcaccgaagt ggtccacaaa gcgatcggat agtggacgaa catcggatgg
     1321 atcggttctc cggcaaagct agcccttgtt ttcatcactt ccacctttca tttgatcgat
     1381 caagattcag ttcttgagcg aagtgcacta ctgactgtct aaccgcaggg actgcgttcg
     1441 gcacaattct cagtctaacc gcacaagccc gtcaaggctt atccgctcgc ggcaggcacg
     1501 aatcgaacgg atcgcgcggc gacgcgaatt ttgttttggt cttgaaatgc tttgcacgtt
     1561 aatcccattc acgggcgaag gagagaaaca gccctgcctt gaagaaaggc catcacgaat
     1621 ggaggaacaa tcatgaccat gaaactttgc gcgatgttgc ttctggcaat ggctctcgga
     1681 gcttgtgaat cgggttcgac cacagaaggc acctcgcccg ccaaaacgaa cgcaaaccca
     1741 agcacgagcg caaacccgag cccgaacgtt ctacagcaag aagacttcgg tcggttatta
     1801 gtttggctcg atcctgatcc ggagcgcgtg ggcgcaatct acgagcggat tcgctggcga
     1861 ctgatcgcga tcctcgcgtc gcgcggttgc gctctggctg aagagttagc tgacgagaca
     1921 atcgatcgcg tggcacgccg attatgcttt cgcgcgactg agcgtcggca atcgagagct
     1981 gttcgaacac aaattcctgt taactgccga ccgcaaacgg aaactgaagg tctcgacagc
     2041 gttgcgcgat cgtttcgcct ccgcctcgac ggcagcaacc acagcgcagg acggtgcgaa
     2101 agcctcgatc ggtgagagat tgcgacttct gtttcggtct caatcagcgc gcatggcgat
     2161 ttgcttttgg tgtcgtgata ttcgcggttt tgattggcac ggtttggctg gtagtgaaag
     2221 agccgcgcat caaagaaggc atcaaggccg catcttcaac cggcgcgcgc ccgttcctgc
     2281 tgcgagcgcg ccccgcatgg ctgggcattc tgcaaacaca tcgccaatcc ccgaacacca
     2341 aacaacttct ccaccgatgc ctccgcatga accggcggcc tcacctatga tcgcgagcat
     2401 cgatttattt cccggcgcat cgcgcgacgg cgacaagatt ccgctcatca atctcccgaa
     2461 gggcgagcac ctcatcgtgc gcttgcaact cgcgctcaaa ccgaatcaaa ccggaatcta
     2521 tcgagcggaa ctcttgacca tcgacgatca aagcatcttt agc
//
LOCUS       DASZZE010000188         3488 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_119757, whole genome shotgun sequence.
ACCESSION   DASZZE010000188 DASZZE010000000
VERSION     DASZZE010000188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3488)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3488)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3488
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119757"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1530
                     /locus_tag="VHD88_03720"
     CDS             <1..1530
                     /locus_tag="VHD88_03720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HVS20927.1"
                     /translation="ANVPGYISEPSLVASDSPNYYHTGDSVTLTMIKGGVITGKVTTA
                     ANEPVVATTVRVLRGRDENGKPLQAIVAFRERLTDDRGVYRIYGLLPGTYIVSAGGPP
                     RLSGVITSSAYDHDTPTYSPSSTRDTASEIYVANGEEVTADIQYRGETGHSISGTLGG
                     LAQSKSQISTGGTVTLIDVRNRATIMNAPVYLSGNNTFAFFGVADGEYELFGSQFLPS
                     RDSLTSEGRRVEVQGADVTGINLSVAPLGSIEGRLILENEPKAGCAKRRATASQETII
                     FGRRYEPETKTTAAPTSKAPQLPDVPIIFTNALTESVPEANGRFALKNLQRGSYRIDP
                     RAPASGWYVRSIAIGSTQAAARNTSSSVARDGIILKSGERLSGLTVTITEGAASLRGR
                     ASVAEGQSLPPNLRVYLVPADKESADNMLRFFEARAQSDGSFAIGNIAPGRYWLISRA
                     PDESDPTKIKSLRQDSALRSQVLKEAETARTEIPLQPCQRITDYDLRYSPAASEPKPK
                     P"
     gene            1852..3285
                     /locus_tag="VHD88_03725"
     CDS             1852..3285
                     /locus_tag="VHD88_03725"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HVS20928.1"
                     /translation="MKRILLILALVFSLIAPLAARPTWLTVVSRTQTQSAAQAKTATA
                     KPTSDIASRVLANGLEVVVLEDHSVPIVTIELAVRNGSFTEPPELNGLSHLYEHMFFK
                     ANRAIANQEEYLQRIGQLGIAYNGSTREEVVNYYFTTTSPNLRAALNFMRDAARYPLF
                     DEKEFERERQVVIGEIDRNESNPFYYLNKEMNDRLFYKYRSRKQPLGDRQTISTATTA
                     MMRLIQSRYYVPNNSALVVTGDVQTEDIYKIAREFFGDWPRREKDPFVEFPLVEHPPL
                     PKSESAIIKQPVQNAVLEIGWQGPSIGKDNAATYAADTFSFIMQQPDSRFQRALVDSG
                     LVAGVNIGYYTQRNVGPINIVAQTTPDKAQAAIKAIYNEVAHFNDKDYYTDEQLESAK
                     ALLEADDLYSREKFDEYASTLGFWWSSTGIDYFRGYLANLRRTSRLDISRYITTYIQG
                     KPHIGLALISDAGQQQAKLTPENLIGQ"
BASE COUNT          831 a         1002 c          928 g          727 t
ORIGIN      
        1 gcaaacgtcc cgggctatat ctcagagccc tcgctcgtcg cgagtgattc gccgaactac
       61 tatcacaccg gcgattccgt aacactgacg atgatcaaag gcggagtgat aacgggcaag
      121 gttactactg ctgccaatga gcctgtggtc gcgacgactg tgcgcgtttt gcgcgggcgc
      181 gacgaaaacg gcaaaccctt gcaagcgatc gttgcttttc gcgaacggct cacagacgat
      241 cgcggcgtct atcgcatcta tgggttgctg ccgggcacct acatagtctc cgccggcggg
      301 ccaccgcgat tatcgggcgt aatcacgtcc agcgcatatg accacgacac gccaacctac
      361 tcgccttcgt caacgcggga cacagcttcg gaaatctacg tggctaatgg cgaggaggtc
      421 acagccgata tccaatatcg cggcgagaca ggccattcaa tcagtggcac gcttggagga
      481 ttggctcagt ctaaaagtca aatctcgact ggcggcacgg ttacgctcat tgacgtgcgc
      541 aaccgcgcta cgatcatgaa cgcgcccgta tatttgtccg gcaacaatac tttcgctttc
      601 tttggcgtcg ccgatggaga gtatgaattg tttggttcgc aattcctgcc aagccgcgac
      661 tcgctaacct cggaggggcg gcgcgtcgag gtacaaggcg cggacgttac aggcatcaat
      721 ttatctgtag cgccgttggg ttcaatagaa ggtcgcctga ttctcgaaaa cgagcccaag
      781 gctggctgcg cgaagcgccg cgcgactgcg tcacaggaaa cgattatttt cggtcggcgg
      841 tacgagccgg aaacaaagac aaccgcggcg ccgacatcga aggctccgca acttcctgat
      901 gttccgatta tcttcacgaa tgccctaacc gaaagcgttc ctgaggcaaa cggcaggttc
      961 gctctgaaaa acctccagag aggttcctat cggatcgatc cgcgcgcacc ggcgtccggt
     1021 tggtatgtta ggtcaatcgc gatcggatca actcaagcgg ccgccaggaa cacaagctca
     1081 agtgtagctc gcgacggaat cattctgaaa tccggcgagc ggctttccgg tctgaccgtc
     1141 acgatcacag agggcgcggc aagtctgcga ggacgcgctt ctgtcgccga aggacaaagt
     1201 ttgccgccaa acctgcgcgt ctatctggtt cccgccgaca aggaaagcgc agataacatg
     1261 ctccggtttt tcgaagcgcg cgcccaaagc gacggcagtt tcgccatcgg caacatcgcg
     1321 ccgggacgtt attggctaat cagtcgcgcg cccgacgaaa gcgatccaac caagattaaa
     1381 tcgctccgtc aggactcggc gctgcgctca caagttctaa aagaggctga gactgccagg
     1441 accgaaattc ctttgcagcc atgccagcga ataactgact acgatttgcg ctactcgccg
     1501 gcagcgtctg aacccaagcc gaaaccttga aatgctcggc ccgctgactt cgggctgaac
     1561 atctattttc ctccacgcgt catcgaaccg gttcgattga aagagaaaca caagggtggg
     1621 cggacacgta aacgaaaccg agctgaaact gtggccatag gtcagaggtg tttagagtac
     1681 caacttcagt tgggattttt ttactcaacg agaaacccga ctaaagtcgg tactctaaac
     1741 acctctgatc gaaacgacga aggtcgccgc ttaaaccaat gcgttcgggg acgtgctgtc
     1801 tttgtggtaa attctttgac tgactcttaa accaaacaac acggagttaa cgtgaaacga
     1861 attcttctaa ttcttgcgct ggttttttca ctcattgcgc cgctggccgc gcgaccaaca
     1921 tggctcaccg tggtttctcg gacgcaaacc caaagcgcgg cacaggcgaa aactgcaacc
     1981 gcaaagccaa cctccgacat cgccagtcgc gttcttgcta acggcctcga agtcgtcgta
     2041 ctcgaagatc attcagtgcc gatcgtgaca attgagctgg ccgtgcgcaa cggttcgttc
     2101 actgagccgc ccgagctgaa cggcctgtcg catctctacg agcacatgtt cttcaaagcc
     2161 aaccgcgcca tcgctaatca ggaagaatat ctgcaaagga ttggacagct cggcatcgct
     2221 tataacggat cgacgcgcga agaagtggtt aactactact tcactacgac ttcgccaaac
     2281 ctgcgcgcgg cgttgaactt catgcgcgac gctgcgcgtt acccactgtt cgacgagaag
     2341 gagtttgagc gcgaacgcca ggtggtcatc ggcgaaatcg accgcaacga atcgaatccc
     2401 ttctactatc tgaacaaaga gatgaacgac cggctttttt ataagtaccg aagtcgcaag
     2461 caacctctgg gcgatcggca gactatttca actgcaacga cggcgatgat gcgattgatt
     2521 cagagtcgct actacgtgcc caacaattcc gcgttggtgg tcacgggtga cgtgcagacg
     2581 gaagacattt acaagatagc gcgggagttt ttcggtgact ggccccgccg cgagaaagat
     2641 ccttttgttg aattcccgct ggtagagcat ccgccgctac caaagagcga aagcgcaatc
     2701 atcaagcagc cggtgcagaa cgcggttttg gagataggtt ggcaagggcc gtcgattggc
     2761 aaggacaacg cggccactta cgcggctgac actttctcgt tcatcatgca gcagcctgac
     2821 tcgcgctttc agcgagcgct ggtcgactcg ggactggtag cgggggtcaa tatcggctac
     2881 tacacgcagc gtaatgttgg gcccatcaac atcgtcgccc aaacgacgcc cgacaaagcg
     2941 caggcggcta ttaaggcgat ctacaacgag gttgcgcatt tcaacgacaa ggattactac
     3001 accgacgaac agctcgaaag cgcgaaagcg ctgcttgagg cagacgatct ttactcgcgc
     3061 gagaagttcg acgagtacgc cagcacgctc ggcttctggt ggtcatcaac cggcatcgat
     3121 tacttccgcg gttatctggc aaatctgcgc cgcacttcgc gcttagatat cagccgttac
     3181 atcacgacgt acattcaggg caagccgcac atcggcctcg cgttgatctc ggacgcaggc
     3241 caacagcaag cgaagctaac gcccgaaaat ctgatcgggc agtaactttc tgcggtttca
     3301 agtttcaggt taacggtttc aagttctccg ctcttattga ggaacgcaat gcagtcacga
     3361 aaacaaacag gtttcatcca acgcggtttg ctgcctactg cctaccgcct gctgcctact
     3421 gttcttgcct gcttactgct tactgccctt ttcgctccgc taacgcaggc gcaatcaacg
     3481 ccgccctc
//
LOCUS       DASZZE010000189         8288 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_72107, whole genome shotgun sequence.
ACCESSION   DASZZE010000189 DASZZE010000000
VERSION     DASZZE010000189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8288)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8288)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8288
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72107"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..350)
                     /locus_tag="VHD88_03730"
     CDS             complement(<1..350)
                     /locus_tag="VHD88_03730"
                     /inference="COORDINATES: protein motif:HMM:NF012571.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20929.1"
                     /translation="MTQSNQSLLSDHVDARLVVADEAVADRNTIVQLDPDHPGFRDQE
                     YRARRNQIAQLALRYQPGETIPDAPYTPEEHRVWSTIWSALQPAHHKHACAEYLGCLK
                     RLEFAPDRIPQLREV"
     gene            898..1764
                     /locus_tag="VHD88_03735"
     CDS             898..1764
                     /locus_tag="VHD88_03735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20930.1"
                     /translation="MQTKTFLLTCSVALLLAGLVSNASAQVSGQPYRVSDKEVTRLLD
                     RIKKETDTFRKSLNKALDKSRLNSTRREDDINAFVKDFEEQTKRLDDHFDHHKSTTVD
                     VDSVLDRAARIDGIMARRPLTQRAQGDWAVLRSDLEHLAAAYNVSWRWGGYEPGNSYE
                     PGPATSNLPYRITDKEVEEIIHRVERQADEFRKSLDSALDKSRFDGSRREDDINAFVK
                     DFYKETKTLHDNFDHHRSTANDVRTVLDRAAEIDQFMRRNKLKKDAQKDWSKLRTHLD
                     ELAGVYNVTWRW"
     gene            2017..2092
                     /locus_tag="VHD88_03740"
     tRNA            2017..2092
                     /locus_tag="VHD88_03740"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2050..2052,aa:Ala,seq:ggc)
     gene            2144..3907
                     /locus_tag="VHD88_03745"
     CDS             2144..3907
                     /locus_tag="VHD88_03745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20931.1"
                     /translation="MKSGRTPESVANSRRWPWTDWIAVLFLFLATAAVVVWQNSRLGV
                     LWDLSYVLENSYRISLGDIPYRDFPFPYPPLTFLIQAAIIKLTGRVFWHHVAYCALMG
                     GLASVLTWRIILNLLRETVARARLLAFLLSLPLIVLGTYCVFPHPFYDPDCTFAILLS
                     VLLLLRLDRQCSSSLRAFLTGIALVVPLFVKQNTGLAFIVSAGLAIVALMTIEIFRRR
                     NARRYAWALTGVFAGLALALALIHFTAGLRNYWHWTIQFAASRRTPARAEMLAIYQGK
                     VLLLWLAIFAVGAILLWFNRRGKRVLALVAALAMSVPFAWPAIYLLRDQDAAERADRL
                     LAVWPVLLIVAFVMAIASVKRRMGVSLVLPFILIGAIHGAFMSQQLWGSTYAIWPLFV
                     ILLAGTIAGLCSLQKSLSSWMTIPLAAIVVASLLISGGFYVRSHERLDYANLSDGELA
                     RSTRPQLKGLSVRGQWLPDFEELVHYSEAQIPRDDGLLIIPGEDLFYYTTGRRPRFPA
                     LLFDHTTNPYSPEEIVQLCRDKNIRWVIIKQDLQLEEDPVEDKDRLIELLEQDYEQVE
                     SLNNYDIYRRKDPAESDDNDK"
     gene            4224..4451
                     /locus_tag="VHD88_03750"
     CDS             4224..4451
                     /locus_tag="VHD88_03750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20932.1"
                     /translation="MNMVRTDIESPQRPVADSASLSNMPKHDAQATVANFDSQYWHCG
                     ESDEIAAPQLAQLRVFASMITGTEPAAVATG"
     gene            4708..5088
                     /locus_tag="VHD88_03755"
     CDS             4708..5088
                     /locus_tag="VHD88_03755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20933.1"
                     /translation="MRKLFMIALALLFVPVSAELIAANAGNLQEQNNQNTTASSGQNQ
                     VRRRHRRHRHRRGIGQSYKQAGTSTAQGGAGFGKNIARGKPIVAGRRLGKGVGRGGKR
                     VGQGSAGVGRKVGNKTKDVVKPKQ"
     gene            5148..6749
                     /locus_tag="VHD88_03760"
     CDS             5148..6749
                     /locus_tag="VHD88_03760"
                     /EC_number="2.7.1.12"
                     /inference="COORDINATES: protein motif:HMM:NF012589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046316 - gluconokinase activity [Evidence
                     IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA];
                     GO_process: GO:0046177 - D-gluconate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase"
                     /protein_id="HVS20934.1"
                     /translation="MNTVLDEAVLEDWPEVDLSVLAASLRAEHEEPVVLSLDIGTSGV
                     RAALFDSRGDEIEGSHAALSNDSHTELVAGGDADADTLFEFVARALDVAVARAERFVS
                     RIDYVAASCFSHSLVGVDDQGRAVTPLLGWADTRAADAIAELRSKFDESEVHARTGAR
                     FHPSYWPAKLLWLRSSRGEFFRRAQRWLSFSDYVALQLFGESTTSVSMASATGLFDQR
                     TCEWDRELAGALGIATEQLPPIGSSGHTFQRLREEYASRWPLLDPAAWFPAIGDGAAN
                     NIGAGCVSSGRVTLMIGTSGAMRVLFAGDPPASLPPELFCYRADRERVVIGGALSDGG
                     GLYRWMKDALFLNYDDDELEQALAVMEPDSHGLTVLPFWSGERATGWSASARGAIIGL
                     TANTKPIEILRAAMEAVCYRFALLARALDAIAPDATIAGAGNALRSSSAWTQMIADVL
                     SRPIELSSAREASCRGAALLALETIGKIDGIETVQSEPGEVFEPDRTRHEVYAQAIER
                     QQALYEGLISHGDTETQREQKEKEK"
     gene            6838..>8288
                     /locus_tag="VHD88_03765"
     CDS             6838..>8288
                     /locus_tag="VHD88_03765"
                     /EC_number="2.2.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016744 - transketolase or transaldolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HVS20935.1"
                     /translation="MQKQSNATPELDQLCVNTIRALAIDAVQKAESGHPGLPLGAAPM
                     AYVLWTRFLRYNPKNPKWENRDRFLLSAGHGCMLLYSLLYLTGYDLSLDEIKNFRQWG
                     SKTPGHPEYGLTPGVEITTGPLGQGFANGVGMAMGAAHLAAKFNQKDFSLIDHYVYAI
                     ASDGDLMEGVASEAASLAGHLKLGKLIYLYDDNHVTIEGFTHLAFSEDVRKRFEAYGW
                     HTSMVEDGNDLDAIEAAIRDAQSVADRPSLISVKTTIGYGMPTAGTRKAHSDAPGEEA
                     VRETKRHLGWPEDKQFYVPDEALAHFREAIERGAQQETEWNELVKNYEAKHPDLGSMW
                     RTVMSGDLPKDWETHLPNFKDAKPVATRVASGQVINALAPHLPMLIGGSADLGVSNNT
                     DIKDSGSFEAGSYDGRIIHFGVREHAMGATLSGMALNGGLIPYGGTFMTFSDYMRPSI
                     RLACLSEVQVIYVFTHDSIGLGEDGPTHQPIEHL"
BASE COUNT         1757 a         2379 c         2371 g         1781 t
ORIGIN      
        1 acttcgcgca actgcggaat gcgatccggc gcgaactcca aacgcttcag acacccgagg
       61 tattccgcgc aagcgtgctt gtgatgcgca ggttgcagcg cgctccagat cgtgctccac
      121 acgcgatgct cttcgggagt atagggtgca tcaggaatcg tttcgcccgg ctgatatcgg
      181 agcgcgagct gcgcgatttg attgcggcgc gctcgatact cctgatcgcg aaagcccgga
      241 tgatccggat cgagctgcac aatcgtgttg cgatccgcga ccgcttcgtc ggcaacaacg
      301 agacgcgcgt caacgtgatc ggagagtaag gattgatttg attgcgtcat atcgatagct
      361 ccttagcctt atgtctggcg gctttgccgc ctcacagtgc ggtgaggctc tgcctcaccg
      421 gcgcactcta gttgagaaga ggctgcgcct ctgttttcgt cgaggcgcag cctcgacgaa
      481 gaagtaaaaa ggcccgacgg aaaggcgaag cctttccgca ctggggagcg gcagagccgc
      541 caaacgaatt cgcgcgccgt ctcccagacc ctaaccccta tcccctaccc cctaccccct
      601 accccttgtc tcctaaacaa aaaagccacc gattctctgg aaggaccgat ggccggtgac
      661 ttaagaactt gtctaccgct tcagatgatc atcgcccgca gacagcgcct cgcccgaccg
      721 tccctcccag cggagagcgc accgtaatag taatagcgat agctgttgcg ctgaccgatc
      781 atcatttcaa aaagggccgt tgccctgagc gtttcaagaa taccgatgtc tatctgtcgt
      841 cgtcaagacg aaacccatga atctctttct gcaggagaat ggtgatagaa tgacagaatg
      901 caaacaaaaa catttttgct tacttgcagc gtcgcgcttc ttttggcggg tttggtttca
      961 aatgcctccg ctcaggtttc ggggcagcct tatcgcgtca gcgataagga agtcacgcgg
     1021 ttgctcgatc gaatcaagaa agagacggac acgtttcgca agagtctgaa taaggcgctg
     1081 gacaagagcc gtctcaacag cacgcgccgc gaagatgaca tcaacgcctt cgtcaaggat
     1141 tttgaagaac agacgaagcg tttggacgat catttcgatc atcacaagtc aacgactgtc
     1201 gatgttgatt cagtgctcga tcgtgcggcg cggattgacg gtatcatggc ccgccgtcca
     1261 ctgactcagc gcgcgcaggg cgattgggcc gtgctgcgct cggacctgga gcacttggcc
     1321 gcggcctaca acgtctcgtg gcgttggggc ggctacgaac ccgggaacag ttatgagccc
     1381 ggtcccgcga cctccaatct gccgtaccgc ataactgata aagaggtcga agagatcatt
     1441 caccgcgtcg agcgtcaggc ggacgagttt cgcaagagtc tcgactcagc tttggacaag
     1501 agccgcttcg acggctcgcg gcgcgaggac gacatcaacg cctttgtcaa agacttttac
     1561 aaagagacaa agacgctgca cgacaacttc gatcatcatc gctcaaccgc gaacgacgtc
     1621 cgtaccgtgc tcgatcgcgc ggcggagatc gatcagttca tgcgccgcaa caagctgaag
     1681 aaggacgcgc aaaaagactg gtcaaagctg cgaacgcatc tggacgaatt ggcaggcgtc
     1741 tataacgtaa cgtggcggtg gtagtaagcg agagaagcaa agcgttcagc cgcgttagcg
     1801 gcgaaatgtt tatagcctcg ccacgccaca tattatctgc ttccgagcag agcgaaatga
     1861 aatgcctttc gctctgctcg gaagattggc gtcaggatgt cgtcgttgtc tataaacatt
     1921 tcgtgcctac ggcactttgg ccagaattga atccaacaga attctcctct atcattactc
     1981 gcactggcat caggtcaaag cgaattggcc gaaaacgggg ccgtagctca gctgggagag
     2041 cgcatgactg gcagtcatga ggtcaggggt tcgatccccc tcggctccac caactcaact
     2101 ccatgcaccg cgggagctcg gcgtcgcgta caattccagg taaatgaaat caggtaggac
     2161 gcccgagtca gtcgctaact cgcgccgctg gccgtggacg gactggatcg ccgtcctctt
     2221 tctttttcta gcaacagccg cggtcgttgt gtggcaaaac tcgagactgg gagttctctg
     2281 ggatctcagt tacgtcctcg agaattcgta tcgaatttca ctcggcgaca ttccttatcg
     2341 cgacttccct tttccttatc cgccgctcac gtttctgatt caggcagcaa ttatcaaact
     2401 caccggacgc gtgttttggc atcacgtcgc gtactgcgcc ttgatgggcg ggctcgcgtc
     2461 cgtgctaacc tggcgcatca ttctcaattt gctgcgcgaa acggttgctc gcgcgcgctt
     2521 gctcgcattt cttttgagcc tgccgctcat cgtgctggga acgtactgcg tctttccgca
     2581 tccgttctac gatccagact gcaccttcgc gattcttctg agcgtgttgc tgctgctgcg
     2641 gctcgaccgt caatgctctt cttcgctgcg cgcgtttctc accggcatcg cgttggtggt
     2701 tccgcttttc gtcaagcaga acaccggtct ggcattcatc gtcagcgccg gacttgcgat
     2761 cgtcgcgttg atgactattg aaatattccg gcgacgtaac gcgcgccgat acgcatgggc
     2821 cctgaccggc gtgtttgccg ggctcgcgct ggctcttgca ctgattcatt ttacggcggg
     2881 actgagaaac tactggcatt ggacaatcca atttgccgcg tcgcgtcgca cgccggcgcg
     2941 cgcagagatg ctcgcgattt atcagggcaa ggttttgctt ttgtggctcg cgatcttcgc
     3001 cgtcggagcg atccttttat ggttcaatcg tcgcggcaaa cgcgtgctgg cgctcgtggc
     3061 cgcgctcgcg atgtccgtgc ctttcgcgtg gccggcaatc tacctgcttc gcgatcaaga
     3121 tgcggcagag cgggctgatc gcctgctggc cgtttggccg gttctcttga ttgtcgcgtt
     3181 cgtcatggca atcgccagcg tcaaacgccg catgggtgta tcgctcgtcc tgcctttcat
     3241 tctcatcggc gccatccacg gagccttcat gtcgcaacag ctttgggggt cgacctacgc
     3301 catctggccg ctgttcgtga tcctgctcgc cggcaccatc gccgggctct gttcgttgca
     3361 gaaatcatta tcgtcatgga tgaccatacc gctggccgcg atcgtcgtcg cgtcgctcct
     3421 gatctccggc gggttctacg tccgttcgca cgagcggctc gactacgcga atctttcaga
     3481 tggtgaactg gctcgatcga cacggccgca gttgaaaggg ctttccgtgc gcggccaatg
     3541 gcttcccgat ttcgaagagc tggtgcacta ttccgaagcg caaataccgc gcgatgacgg
     3601 gttgctgata attcccggcg aagacctctt ctattacacg actgggcgac gccctcgctt
     3661 tcccgcgctg ctgttcgatc acaccaccaa tccgtacagc cccgaagaga tcgtccaact
     3721 ctgccgggac aagaatatcc gctgggtgat aatcaaacag gatctccaac tcgaagaaga
     3781 tccagtcgaa gacaaagatc gtttgatcga attgctggaa caggattacg aacaggttga
     3841 gagtctgaat aattacgaca tctatcgacg gaaggatcct gcggagagcg acgacaatga
     3901 caagtgacca acgaccgcag gcgtaacgtc aaagaaggtc gatacagaac cgggagcggt
     3961 agcgaccgga tcatagactc aacttgagtg gcagcatccc gtcgctaccg ctccgggttc
     4021 tgtaacggct ctccctgatc gtataacaca tacgcgatag catcgagcaa ttctctctcg
     4081 gtccaaagat atctcttgct gccgcggtaa acccagggac tgcgttcgct gttccaacat
     4141 cccgtctctc tcatcgagcg cgtcgcgttc gcttttaacg ctctcaaaat cacttcaggc
     4201 ttacaagtgg ctgacacgac tgaatgaaca tggttcgtac ggatattgaa agcccacaac
     4261 gaccagttgc ggatagcgca agtctctcga acatgccaaa gcacgacgcg caagcgacgg
     4321 tcgccaactt cgattcgcag tactggcatt gcggcgaatc ggacgaaatc gccgctccgc
     4381 agttggcaca gttgagggtt ttcgcttcca tgatcacggg tacagaaccg gcagcggtag
     4441 cgaccggcta aactcataaa gagtctaatt gggacttacc cgctcgctac cgcgagcggt
     4501 tctctaccgc cttggtcagc ttagcactgc aaacgcgaaa ttcgccacaa gaaaaagtct
     4561 ctttgttgat ccgttgcgaa gggctacccg gtcgctaccg ctcccggttc tgtagcgcaa
     4621 aatgctggac tgagtaacgg gctgtgtgcg attctttagc cctaaacaaa attgcatagt
     4681 gcacaccagg gaaaggggag aagcatcatg agaaagcttt ttatgatcgc gctggcgcta
     4741 ctgttcgtgc cggtgtctgc cgaactgata gcggcgaacg caggcaatct tcaagagcag
     4801 aataatcaga acacgacggc ctcgtcgggt caaaaccagg tccgtcgccg acaccgacgt
     4861 cacaggcatc gtcgcggcat cggtcaatcg tacaagcagg ccgggacttc gacggcccag
     4921 ggcggcgccg gctttggcaa gaacatcgcg cgcggcaaac cgatcgtggc gggccggcga
     4981 ctcggcaaag gcgttggccg cggcggtaag cgcgtcggcc agggatcagc cggagtcggc
     5041 aggaaagtcg gtaacaaaac aaaggacgtc gtgaagccta agcagtaatc gagctgatag
     5101 cttgaccgat actgctgagt tcgttgcgcg ttctctcccc aaactgaatg aataccgtcc
     5161 tcgacgaagc agttctcgaa gactggccgg aagtcgatct gtcggtgctc gccgcgtctc
     5221 tgcgcgctga gcacgaagag ccagtcgtgc tctctctcga tatcggcacc tcaggcgtgc
     5281 gcgcggcgct gttcgacagc cgcggcgatg agatcgaagg ctcgcatgcg gcgctctcaa
     5341 atgattcgca taccgagtta gtcgcgggcg gagatgcgga cgccgacacg ctgtttgagt
     5401 tcgttgcccg tgctcttgac gtggcggtcg cgcgcgccga aaggttcgtc tcgcgcatcg
     5461 attacgtcgc ggcgtcgtgt ttctcgcaca gcctggttgg cgtcgatgat caaggccgcg
     5521 cggtaacgcc cttgcttggc tgggctgata cacgtgctgc ggatgcaatc gcggaactaa
     5581 gatcgaaatt tgacgagagt gaagttcatg cgcgcaccgg cgctcgcttt catccgagtt
     5641 actggcccgc aaagttgctt tggctgagaa gcagtcgcgg cgagttcttt cgtagagcac
     5701 aacgatggct ttcgttttcc gactatgtgg ctctgcaatt attcggagaa tcgacgacca
     5761 gtgtttcgat ggcttcggcc actggtctat tcgatcagag gacgtgcgag tgggatcgcg
     5821 aactcgcggg agcgctcggc attgccacag agcaattgcc gccgatcggt tcatcaggtc
     5881 acacctttca gcgactgcgc gaagagtacg cgtcgcgctg gccgctgctc gatcccgcgg
     5941 cgtggtttcc ggcgattggc gacggcgccg cgaacaatat cggagctggt tgtgtcagtt
     6001 ccggtcgcgt gacgctgatg atcggaacat caggcgccat gcgcgtgctg tttgcgggtg
     6061 atccgccagc gtcactgccg cctgagttgt tttgctatcg cgccgatcgc gaacgcgtcg
     6121 tgatcggcgg cgctctctct gacggcggcg gactctatcg ctggatgaag gacgcgctct
     6181 tcctgaatta cgacgatgat gaactggaac aggcactcgc ggtgatggaa cccgactcgc
     6241 acggcctgac cgttttgccg ttctggtccg gcgagcgcgc gaccggctgg tcagcttcgg
     6301 cgcgtggcgc gatcattgga ctgacagcga acactaaacc gatcgaaatt ctgcgcgcag
     6361 ccatggaagc tgtctgttat cgcttcgcgt tgttggctcg ggctctcgat gcgatcgcgc
     6421 cggacgcaac catagcaggt gccggcaatg ctctgcgttc ctcttccgca tggacacaga
     6481 tgatcgccga cgtgctctcg cggccgatcg aactttccag cgcgcgcgaa gcttcatgtc
     6541 gcggcgcggc tttgcttgcg ctggaaacga ttggcaaaat agacggcatc gagacggttc
     6601 agtcagagcc tggcgaagtt tttgaacccg acaggacgcg gcacgaagtt tacgcgcagg
     6661 cgatcgaacg gcagcaagcg ctttatgaag gattgatcag ccacggagac acggagacac
     6721 agagagagca aaaggaaaaa gaaaagtagc tcggtccgtt ttgtatcctc tttttatttg
     6781 tatcctccgt gtctctgtgc ctctgtggca aattaaggaa caaagatgag cgccatcatg
     6841 cagaaacaat ctaacgccac gccagagctt gatcagcttt gcgtcaacac aattcgcgcg
     6901 ctggccatcg atgctgtgca gaaggctgag tcaggacatc ccggtctgcc actcggcgcc
     6961 gcgccgatgg cttatgtttt gtggaccagg ttcctgcgct acaacccgaa gaatccgaag
     7021 tgggagaatc gcgatcgctt tctgctttcc gccggtcacg ggtgcatgtt gctttactcg
     7081 ctgctctatc tcacgggcta cgatctttcg ctcgatgaga tcaaaaactt tcgccagtgg
     7141 ggatcgaaaa cgccgggaca tcccgagtac ggcctgacgc ctggagtcga aatcaccacc
     7201 gggccgctgg gccagggctt tgcgaacggt gtcggtatgg cgatgggcgc ggcgcatctg
     7261 gcggcgaagt tcaaccagaa agacttttcg ctgatcgatc attacgtcta tgcgatcgcg
     7321 tctgacggcg atttgatgga aggcgtcgct tctgaggcgg cgtcgcttgc gggacacttg
     7381 aagcttggca agctcatcta cctctacgac gacaatcacg tcacgatcga aggcttcacc
     7441 catctggctt tcagcgaaga cgtgcgcaaa cgctttgaag cttacggctg gcacacttcg
     7501 atggtcgaag atggaaacga tctcgacgcg atcgaagctg cgattcgcga tgcgcaatca
     7561 gtggccgatc gtccgtcgct gatttccgtc aagacgacca tcggttacgg catgccgacc
     7621 gccggcacgc gcaaagcgca cagcgacgcg cccggcgaag aagcagtccg tgaaaccaag
     7681 cgacacctcg gctggcccga agacaagcag ttctacgtgc ccgacgaagc gctcgcacat
     7741 ttccgagaag cgatcgagcg gggcgcgcaa caggaaaccg aatggaacga actggtgaag
     7801 aactacgaag cgaaacatcc tgacctcgga tcgatgtggc gcaccgtgat gagtggcgac
     7861 ttgccgaaag attgggaaac gcatctaccc aatttcaaag atgccaagcc cgttgcgacg
     7921 cgcgtggcca gcggacaggt gatcaatgcg ctcgcgccgc atctgccgat gctcatcggc
     7981 ggttcagccg atctcggcgt gtcgaacaac acggacatca aagacagcgg tagctttgaa
     8041 gcaggcagtt acgacggccg catcattcac tttggcgtgc gcgaacacgc gatgggcgcg
     8101 acactctccg gcatggcgct gaacggaggc ttgattcctt acggcggtac gttcatgacg
     8161 ttttccgatt acatgcgacc atcgattcgt ctcgcctgcc tctcagaagt gcaagtgatt
     8221 tatgttttca cgcacgactc gatcggcttg ggcgaagacg ggccgacgca tcaaccgatc
     8281 gagcacct
//
LOCUS       DASZZE010000190         2617 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_315855, whole genome shotgun sequence.
ACCESSION   DASZZE010000190 DASZZE010000000
VERSION     DASZZE010000190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2617)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2617)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2617
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_315855"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(125..>2617)
                     /locus_tag="VHD88_03770"
     CDS             complement(125..>2617)
                     /locus_tag="VHD88_03770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20936.1"
                     /translation="NPNEVYAGAWRAQRKPWTIISGGPASEGGVYKTTDGGDHWTRLT
                     TGLPQNLIGKVWLDIAQSNSKIVYAMVEAPDKEGGLYRSDDRGATWKLVNNDTRLRAR
                     PFYFNKMFVNPKDENDVWVTELGFHHSIDGGKTFTTVGTPHGDNHSVWINPDNPKIFI
                     ESNDGGANVTQDGGRSWSSIFNQPTAEFYMVDVDNEFPYRLYGPQQDNSTVAVYNVPP
                     FAWGADDPTQTWIHASGCESGQIRATPDGKIIYGDCKGEFGRYNVDTGQEQHYWINPE
                     QRYGMDPKDMKYRFVRQAPIEIDPFNPKVVYHGSQFLHKTTDGGIHWTKISPDLTANG
                     PEAQMHGGEPITRDVTGEEVYAALYAIRASRREPGVIWTGSNDGLVWVTHNGGNTWKN
                     VTPPGLPPGGRVHTIEDSPHRRGSAYVCVYRIYFGDFKPYLYMTNDYGEHWTLLTDGK
                     NGIPDDHPIHVVREDPQQEGLLYAGTWYGAFVSFDQGRHWQTLQQNLPATTVTDIFVK
                     DDDLVISTMGRAFWIMDDIAPLRQLAASVMRPFPRHVMRLPHGEEIESFDNSANVFLF
                     TPAPTYRTHYAAASGRPDRPEFPPIGARIDYALTNSSGEVRLEILDSSGKLIRSYSSE
                     GGRASAQQGSGGGGGGRGRALPTTLPKKSGMNRFIWDLRYAGGAASRGGGEEGGFSGA
                     GPLAPPGAYTARLTANGVTRTDRITIRIDPRYANDGITVADLVEQTNFALKVRDSLAE
                     ARRLGERVKQAMDRSASDKTRLEAVYYKIANRPGPYPDNMLVEQFANIAREIGQADQK
                     VGASAYERYDELVKELAAMKSEVDKAVGPASP"
BASE COUNT          476 a          799 c          738 g          604 t
ORIGIN      
        1 gtagagcagc tgactcttaa tcagcgggtc gcaggttcga gccctgctcg gctcaccagt
       61 cttcataata gttaagggca gtcaaacgtg actgcccttt ccttttcacg cttacggtgt
      121 aagttcacgg tgacgcgggt ccgacggctt tatcaacctc gctcttcatc gcggcgagtt
      181 ccttcaccag ctcatcatag cgttcgtacg cgctggcgcc gactttctga tccgcttgcc
      241 cgatctcgcg ggcgatgttc gcgaactgtt cgacgagcat gttgtcgggg tatgggcccg
      301 gccggttagc gatcttgtag tacaccgctt ccagtcgcgt tttgtcgctg gcgctgcgat
      361 ccatcgcttg cttcacacgt tcaccgagcc gccgggcttc agcgagcgag tcacgcacct
      421 tcaacgcgaa gtttgtctgc tcaacgagat cggcgacggt gatgccgtcg ttcgcgtaac
      481 gcggatcgat ccttatagtg atcctgtctg tcctagtcac accattcgcc gtgaggcgcg
      541 ccgtgtatgc gcccggagga gcaaggggac ccgcgccact gaagccgcct tcttcgccgc
      601 caccgcggct cgccgctcca cccgcatacc gcagatccca gatgaagcgg ttcattccgc
      661 tcttcttcgg caatgttgtt ggcaatgcgc gtccacgacc gcctcctcct ccgccactac
      721 cttgttgcgc cgacgcgcgc ccgccttcgc tcgagtagct gcgaatgagt ttgccgctgc
      781 tgtccaggat ttcgagccta acttcaccag acgaattagt cagcgcgtaa tcaatgcgcg
      841 cgccaatcgg cgggaactcg ggccgatccg gccgacccga cgccgctgcg taatgcgtgc
      901 gataagttgg cgcgggcgtg aagagaaata cgttcgcgga attgtcgaag gactcaatct
      961 cttccccgtg cggtaatctc atgacgtgcc gcggaaacgg tctcatcacg ctcgccgcaa
     1021 gctgccgcag tggcgcgatg tcatccatga tccaaaatgc ccgccccatc gttgaaatga
     1081 cgagatcatc atccttgacg aagatgtcgg tgacggttgt cgccggcagg ttctgctgaa
     1141 gggtttgcca atgccgacct tgatcgaacg agacgaacgc gccgtaccaa gtacccgcgt
     1201 aaagcaatcc ttcctgttgc ggatcttcgc gcacgacgtg tatcggatga tcgtcaggga
     1261 tgccgttctt gccatcggtc agcagcgtcc agtgctcgcc gtagtcgttc gtcatgtaga
     1321 gatatggttt gaagtcgccg aagtagattc gatagacgca gacataggcc gagcctctac
     1381 gatgcggcga gtcttcgatc gtatgaacgc gtccgccggg cggcaggcct ggcggcgtca
     1441 cattcttcca ggtgttgccg ccattgtgag tcacccacac aagaccatcg ttcgagcccg
     1501 tccagatgac gcccggctcc ctgcgcgacg cgcgaatcgc gtaaagcgcg gcgtaaactt
     1561 cttcgcccgt aacatcgcgc gtgattggtt cgccgccatg catctgcgct tctggtccat
     1621 tggcagtcaa gtcaggactg atcttcgtcc agtgaattcc gccatcagtc gtcttatgca
     1681 gaaactgtga gccgtgatag acaaccttcg gattgaacgg atcgatctcg attggcgctt
     1741 gacgcacaaa gcgatacttc atgtcttttg gatccattcc gtaacgctgc tcgggattga
     1801 tccagtagtg ctgttcctgt ccggtgtcca cgttgtagcg accgaactca cctttgcagt
     1861 cgccatagat aatcttgccg tcgggcgtcg cgcgaatttg gccgctctcg caacccgagg
     1921 cgtgaatcca ggtttgggtc ggatcgtctg cgccccacgc gaacggcggc acgttgtaaa
     1981 ccgcgacggt gctgttgtcc tgctgtgggc cgtaaagccg gtacggaaat tcattgtcaa
     2041 catcgaccat gtagaactcc gcggtcggct gattgaagat cgatgaccag cttcgcccgc
     2101 cgtcttgcgt gacgttcgcg ccgccgtcat tgctctcgat gaaaatcttc ggattgtccg
     2161 gattgatcca gactgaatga ttgtcgccgt gcggcgtgcc gacggtggtg aaggtcttgc
     2221 cgccgtcgat cgagtgatga aagccgagtt cggtaaccca cacatcgttt tcgtctttcg
     2281 ggttaacgaa catcttgttg aaatagaaag gccgcgcgcg cagacgcgtg tcgttattga
     2341 cgagcttcca cgtcgcgccg cgatcgtcgg atcgataaag gccgccttcc ttatccggcg
     2401 cctccaccat cgcatagacg atcttcgaat tcgattgcgc gatgtccagc cacactttgc
     2461 cgattagatt ttgcggcagg ccggtcgtca gacgcgtcca gtgatcgccg ccgtcagtcg
     2521 tcttgtacac gccgccttcg ctggccggcc cgccgctgat gatcgtccag ggcttgcgtt
     2581 gcgcgcgcca cgcgcccgcg taaacctcgt tcggatt
//
LOCUS       DASZZE010000191         1643 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_119888, whole genome shotgun sequence.
ACCESSION   DASZZE010000191 DASZZE010000000
VERSION     DASZZE010000191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1643)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1643)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1643
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119888"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..945
                     /gene="hslU"
                     /locus_tag="VHD88_03775"
     CDS             <1..945
                     /gene="hslU"
                     /locus_tag="VHD88_03775"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: protein motif:HMM:NF003544.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HVS20937.1"
                     /translation="FDSAETTAPVLVADPEPHDENFARTREKLRTQLRSGKLDNRLVE
                     IEVREKSFPTIEFAGPMGVEEMGINMKDMLGNLFQGRSKRRKMRVDEAMEYLMQEEEE
                     RLIDMDAVARAALERVESSGIIFLDEIDKIAGRESGHGPDVSREGVQRDILPIVEGTT
                     VNTRYGMVRTDHILFVAAGAFHVSKPSDLIPELQGRFPIRVELESLTIDDFKRILVEP
                     KNSLVKQYRALMETEGVKLDFTADAIDAVANFAARVNQQTEDIGARRLHTIMERLLDE
                     ISFEGPDLEPKEQSIDAAYVELMLAETVKDQDLSRYIL"
     gene            977..>1643
                     /locus_tag="VHD88_03780"
     CDS             977..>1643
                     /locus_tag="VHD88_03780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20938.1"
                     /translation="MSAPPQISVSKRNEVARKLLLLFFVSALSLAPTCGKRKPPLPPV
                     ERIPQRTELLSGAQRGNQIILSWPAPRRNAPEGSVQSIRRVDVYRVAEKPNAPLPMTE
                     EEFAARATLVGSVTYEEIKKAGDNLTYTDPLELAGEAARLRYAVRYVNAAGERAAFSN
                     FLLIEPAARVAEPPTNVTREYSETAITIKWEAPKTNIDGSTPVNLLGYNVYRVVASQP
                     TSGQ"
BASE COUNT          389 a          465 c          458 g          331 t
ORIGIN      
        1 tttgattcgg ctgagacaac cgcgccggtt ttggttgccg accccgaacc gcacgatgaa
       61 aactttgcgc gcacacgcga gaagctgcgc acccagctcc gctcaggcaa gctcgacaac
      121 cgtctggtcg agatcgaagt gcgcgagaaa agctttccga cgatcgagtt tgccgggccg
      181 atgggcgtgg aagaaatggg catcaacatg aaggacatgc tcggcaatct ctttcagggc
      241 cgcagcaaac gccgtaagat gcgcgtcgat gaagcaatgg agtatttgat gcaagaggaa
      301 gaggaacgcc tgatcgatat ggacgctgtg gcgcgcgcgg cgctggagcg cgtcgaatcc
      361 tcgggcataa tttttctcga cgagatcgac aagatcgccg gccgcgagtc aggtcacggt
      421 cccgacgttt cacgcgaagg cgtgcaacgc gacatcctcc cgattgtcga aggcacgacg
      481 gtgaacactc gctatggaat ggtgcgcacg gatcacattc tgttcgtcgc tgctggagct
      541 ttccatgttt ccaagccgtc tgatttgata ccggagttgc agggccgctt tccgattcgc
      601 gtagaactcg agtcgctaac gattgatgat ttcaaacgaa tcctggtcga gccaaagaat
      661 tctctcgtta agcaatatcg cgccttgatg gagaccgaag gcgtcaagct tgatttcacc
      721 gctgacgcaa tcgacgcggt cgccaacttt gcggcgcgcg tcaaccagca aacggaagac
      781 atcggcgcgc ggcgtctgca cacaatcatg gaaaggcttt tggacgagat tagctttgaa
      841 ggtcccgatc ttgagccgaa ggagcagtcg atcgatgcag cgtatgtcga gctgatgctc
      901 gcagaaactg taaaagatca agatctcagt cgttacattc tttagtccgc gcgcaaacct
      961 tttgtcccaa actacagtgt ccgcaccgcc acaaatctca gtatcaaagc gcaacgaagt
     1021 cgctcgcaaa ctcttgttgt tgttcttcgt ctccgcacta tcgctggcgc cgacgtgcgg
     1081 gaagcgaaag cctcccttgc cgccggttga aagaatcccg caacgcactg aacttttgtc
     1141 gggtgcgcaa cggggcaatc aaataatctt gagttggccg gcgccccgac gcaacgcccc
     1201 tgaaggcagc gtgcaaagca ttcgtcgcgt tgatgtgtat cgcgtcgcgg aaaaacccaa
     1261 cgcgccgctg ccgatgacgg aagaagaatt tgcggcgcgc gccacgctgg tcggctcagt
     1321 tacttacgaa gagatcaaga aggccggcga caatctcact tacactgacc cgctcgaact
     1381 ggccggcgag gccgctcgtc tgcgctacgc agtccgctat gtcaatgccg ccggcgaacg
     1441 agcagccttc tcgaactttc tactgatcga acctgcagct agagttgccg aaccgccaac
     1501 taatgttacg agggaatact cagaaaccgc catcacgatt aaatgggaag cgccgaagac
     1561 aaacattgat ggctcgacgc cagtgaatct gctcggctac aacgtctatc gcgttgtcgc
     1621 gtcgcaaccg acctctggac aga
//
LOCUS       DASZZE010000192         5407 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_22585, whole genome shotgun sequence.
ACCESSION   DASZZE010000192 DASZZE010000000
VERSION     DASZZE010000192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5407)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5407)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5407
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22585"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2981
                     /locus_tag="VHD88_03785"
     CDS             <1..2981
                     /locus_tag="VHD88_03785"
                     /inference="COORDINATES: protein motif:HMM:NF013283.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="POTRA domain-containing protein"
                     /protein_id="HVS20939.1"
                     /translation="VTLNLAPTTGTPIARDEIRARLNLLEPGRRFSIPAIERNADEIQ
                     TYLRDRGYYNATVEHAEQLDEFDATGTRRRVVYTITPGQQSHVGSFDIVVKDFDASNI
                     KPFLKLQRGTPFTNDILADDVNRIRQAFIAQNYLAPTLDDPRPRFDKDKNEVNIELNV
                     RSIGPKVEVTFKNYTLKDKKARALLPVKREGNIDFSVIEEGERRVKNQLQEQGYFFAV
                     VEPACTVTPPTLTMGENGTRETCLNLNPEELSGHTVNINYDVNLNRRLKLTDIRITGT
                     NKLTVADIQDELKTQKANPLGFIPLLGGYGRGFTSTALLEEDHRTIKAHMADLGYRHA
                     EVNVLQGISVNQDTVVITFNVDEKALTRVGDIKITGATAFTEGQLRKEINTVVGGPYS
                     PAQKRADTDRLLNFYAREGYIQAEILAFLDELPKQGSDEQVRVVFNITKEGAKALVNE
                     IVVNGVTGSAAVQRTKRDAILRAIPLSPGDLLRADKITEAERALYITDAFRQVLISQQ
                     PAGDGPNGTKKYDVIIDVEEKKPRVIEYGGGYSSDTGPLGLLEVTNVDFMNKLRQGAV
                     RLRASPRQQLVRFEFIDPRFTRYGTRQYAPLAVSVQYLRDSTITRFFRSTIDRGTFGI
                     VQRLDAKGNPIDVLGNRVGEPTINRFTFTVETQRVLSQQRHSIVFFRYSYEDVRLRNI
                     DSLLVKDILQPDSVVRLSRFGTSFVYDTRQRCARRLPGSATSDEVISRSGEVCRYNQV
                     DATRGQYLSADYSVAAESLGGNTSFSRFLSTYHTYYKVARARQTVFAGNLTVGLAQLF
                     TPRDRNGNGRIDDVDRLLPISERFFSGGSATLRGFAFEEVGPRQAIVPLGQFRDRQGN
                     LIGLNPFTVPIGGNAMVVMNLEARVPVTRELQVVPFYDGGNVYRSIGDVFRPKPITRT
                     GNFLEDVNAQNLRVHWSNTVGLGFRLKTPLGGALAVDYGFLLNPSEFLIPQNLNTNSP
                     STAIFRLHQGQIQFRFTQTF"
     gene            3033..3770
                     /locus_tag="VHD88_03790"
     CDS             3033..3770
                     /locus_tag="VHD88_03790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20940.1"
                     /translation="MRPLRRRSKNRRKTPRLVECLLLISFALLPFALSPSATAQVIAD
                     RTIATVTNGSQATPDVITYSDLVWQLALEPGTPFSERPGSNELRHALESIEDQLLILQ
                     EARKLPTANTPEAIAKHNKDVQDRRDELARLMGSAARLQERMTRVGLTSEQLDAILRD
                     RVVVEDYLDFRFRAFVVVTPKEITDRYNQDYGRLRNTGRIVPTLDSVRDQIEQKLKAE
                     KEEEQIDKFVDSLREQPGTEIVILSPV"
     gene            3870..4709
                     /locus_tag="VHD88_03795"
     CDS             3870..4709
                     /locus_tag="VHD88_03795"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HVS20941.1"
                     /translation="MAQDHDRSDRPRVGLALSGGAARGIAHVGVLRAFEEHAIPVDAI
                     AGASAGALIGGAYAAGLSIKQLEELALKFRWRHMARLSFSRLGLQSNARMENFLRARL
                     PVTRFEELKIPFAAMVTDLRKGTPLALRDAGDVAFAIRASCCLPAFHVPVRDGDGRLL
                     VDGGLVANLPISYTRDLGADIVIAVDVGADGARFMEAPRTALGVLTLVFVAVERVVSN
                     QESKDADLIIIPKVGHIRWDETRRADELLTAGYDATLESIESIKELIERYALNQKPSE
                     SFV"
     gene            4856..>5407
                     /locus_tag="VHD88_03800"
     CDS             4856..>5407
                     /locus_tag="VHD88_03800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20942.1"
                     /translation="MDRSEFSYASLRLCVRHLLAKAQSCKATDRNRKLKHSLLRFALA
                     IFLFALVSFSIFFIHSYRSYAEIVDARLARGYLTSRAGIYAAPRTLRAGQKVSRDGLA
                     AALRRAGYIDGDDASEVWNGSFAVHSEAIEIRPNNTSGFPSVVNVTFDRDGRINSLTG
                     DDINLDSFTLEPEPLTNDAAMKSG"
BASE COUNT         1190 a         1547 c         1526 g         1144 t
ORIGIN      
        1 gtgtgacatt aaatctcgct ccgactaccg gaactccgat cgccagagac gagattcgcg
       61 cgcggcttaa tctgctcgag cccggccgcc gcttctcgat acccgccatc gagcgcaacg
      121 ccgacgagat tcaaacctac ctgcgcgatc gcggttacta caacgctact gtcgagcacg
      181 ccgaacagct tgatgaattc gatgccaccg gaactcggcg aagagtcgtt tacacaatca
      241 cgccgggtca gcaatcgcat gtgggcagct tcgatatcgt cgtgaaagat tttgacgcga
      301 gcaacatcaa accttttctc aaacttcagc gcggaactcc ctttaccaac gacattctcg
      361 ctgatgacgt gaatcgaatt cggcaagcgt tcatcgcgca gaattatctt gcgcccacgc
      421 tcgacgatcc gcggcccagg tttgataagg acaagaacga agtaaacatc gagttgaacg
      481 tccgctcgat cgggccgaag gttgaagtca ctttcaagaa ttacacattg aaagataaga
      541 aagcgcgcgc gctgctgccc gtcaaacgcg aaggcaacat cgacttttca gtcatcgaag
      601 aaggcgagcg ccgcgtaaaa aatcaacttc aggagcaagg ttatttcttt gcggtggtcg
      661 aacccgcttg caccgtcacg ccgcccacgc tgacgatggg cgagaatgga acccgggaaa
      721 cttgtctgaa cctaaacccc gaagaactga gtgggcacac ggtcaatatt aattatgatg
      781 tgaacctcaa tcgccgtttg aaactgacgg acatccgcat taccggcacg aacaagctca
      841 ccgtcgccga cattcaggat gaattgaaaa cgcaaaaggc gaacccgctc ggattcattc
      901 cgcttctcgg cggctacgga cgcgggttca ccagcactgc gctgctcgaa gaagatcacc
      961 gcacgatcaa ggcgcacatg gcggatcttg gctatcgcca cgctgaggta aacgtgttgc
     1021 aaggcatctc ggtcaatcag gacaccgtgg tcatcacgtt caacgtcgat gaaaaagcac
     1081 tgacgcgcgt cggcgacatc aagatcaccg gcgcgacggc ttttacggaa ggtcagttgc
     1141 gcaaagaaat caacaccgtc gtgggcgggc catactcgcc ggcgcagaaa cgcgccgaca
     1201 ccgatcgcct gctcaacttc tatgcgcgcg aaggctacat ccaggcggag attctggctt
     1261 ttcttgatga gctgccaaag cagggcagcg acgaacaggt gcgcgtcgtt ttcaatatta
     1321 cgaaagaggg cgcgaaggca ctcgtcaacg agatcgtcgt caacggcgtg accggcagtg
     1381 cggccgtcca acgcacgaaa cgcgacgcga tcttgcgcgc gattccgctg tcaccgggcg
     1441 acctgctgcg cgcggacaag atcaccgaag ccgagcgcgc gctttatatc accgatgcgt
     1501 ttcgtcaggt tcttatcagc caacagcccg cgggcgacgg gccaaacggc acaaagaagt
     1561 acgacgtgat tatcgacgtc gaagaaaaaa aaccgcgcgt gatcgaatac ggcggcggct
     1621 actccagcga caccggcccg ctcggtctgt tggaagttac gaacgtcgat ttcatgaaca
     1681 agctgcggca gggagctgtg cgtttgcgtg ccagcccgcg acaacaactg gtgcgttttg
     1741 agtttatcga tccgcgcttt acgcgctatg gcacgcggca atacgcgccg ctggcggtgt
     1801 cggttcagta tctgcgcgat tcgaccatca cgcgattctt tcgatccacg atcgatcgcg
     1861 gcacgtttgg aatcgtgcag cgccttgatg ccaagggaaa tccgatcgac gtgctgggga
     1921 accgcgtggg tgagccgacc atcaaccgtt tcactttcac agtggaaact cagcgcgtgc
     1981 tcagccagca gcggcacagc atcgtctttt tccgttacag ctatgaagac gttcgcctgc
     2041 gcaacatcga tagtcttttg gtcaaagaca tcctgcaacc cgattcggtc gtgcgactgt
     2101 cgcgtttcgg gacctcgttc gtctatgaca cgcgtcaacg ctgcgcgcgg cggcttcccg
     2161 gcagtgccac ttcggacgaa gtgatctcgc gctctggaga agtttgtcgt tacaaccagg
     2221 ttgacgcaac tcgcggccag tatttgagcg cggactacag cgtggcggca gagtcgctgg
     2281 gcggcaacac ttcgttcagc cgatttctgt caacgtatca cacctattac aaagtcgcgc
     2341 gcgcgcgcca aacggtattc gccggcaatc tgactgttgg tctggcgcaa ttgtttacgc
     2401 cgcgagatcg aaacggcaat ggtcgcatcg acgacgtgga tcgattgctg ccgatcagcg
     2461 aacgtttctt ttccggtggg tcagcgactc tgcgcgggtt cgcttttgaa gaagtcgggc
     2521 cgcgtcaagc aatcgtcccg ctgggacagt ttcgcgatcg tcagggaaac ctgatcggcc
     2581 ttaacccgtt cacggttccg attggcggca acgcgatggt ggtgatgaac ctcgaagcgc
     2641 gcgtgccggt caccagagaa ttgcaagtgg tgccatttta cgatggcggc aacgtttatc
     2701 gcagcatcgg tgatgtcttt cgtccgaagc cgatcacccg caccggaaat tttctcgaag
     2761 atgtcaacgc tcaaaatttg cgcgtgcatt ggagcaacac ggtgggtctg ggctttcgcc
     2821 ttaagacgcc gctcggcggc gcgctggcgg ttgactacgg atttcttttg aatccgtcgg
     2881 agttcttgat cccgcagaac ctgaatacaa actctccttc gacggcgatc tttcgtctgc
     2941 accagggaca gattcaattc aggttcacgc agacgttcta gcggctggcg aaaagggggg
     3001 aaagagaaag aaagatgaat ggcgcgaaat caatgaggcc tctgcgaagg cgctcgaaga
     3061 accggcgcaa aacgccacgt ctggtcgaat gtttgctctt gatttccttt gcccttttac
     3121 cctttgccct ttccccctct gccacggccc aggtcatagc cgaccgcacc atcgcgaccg
     3181 taactaacgg ctcgcaggcg acgcccgacg tgatcactta ttcggatttg gtttggcaac
     3241 tcgcgcttga gcccggcacg cctttctcgg aaagaccagg ttcgaacgaa ctgaggcacg
     3301 cgctcgagtc gatcgaggac caactcctga ttttgcagga agcgagaaag ttgccaaccg
     3361 cgaacacgcc tgaggcgatc gcaaagcaca acaaggacgt gcaggacagg cgagatgaac
     3421 tggcgcgctt gatgggatcg gccgcgcgtt tgcaagagcg tatgacgcgc gtgggattga
     3481 ccagcgaaca actggatgcg atcttgcgcg accgcgtcgt ggtcgaagac tatctcgatt
     3541 ttcgttttcg cgctttcgtc gtcgtcactc caaaggaaat taccgatcgc tataaccagg
     3601 actacgggcg cctgcgcaac accggccgca ttgttcccac tctcgattct gtgcgcgacc
     3661 agatcgaaca gaagttgaaa gccgaaaaag aggaagaaca gatcgacaag tttgttgaca
     3721 gtctcagaga gcaacccgga accgagattg tgatattgag tccggtgtga cccttcaact
     3781 catcgatcgt ttagaggcgg gcgggctatt gcccgccata actccgttgc cgcttggcgg
     3841 gcggtagccc gcctctaagc attcggccaa tggctcaaga ccatgacaga tctgatcgcc
     3901 ctcgcgtcgg cctggctctt tcgggtggtg cggcacgcgg catcgcacat gtcggcgtgt
     3961 tgcgcgcttt cgaagaacac gcgattcctg tcgatgcgat tgccggagcg tcggcaggtg
     4021 cgctgatcgg cggcgcctat gccgcagggc tatcgatcaa gcagcttgag gagttagcgc
     4081 taaaatttcg ctggcgtcac atggcccggc tttctttttc tcgtttaggc cttcagtcaa
     4141 acgcgcgtat ggaaaacttt ctgcgcgcgc gcctgcccgt gacgcgcttc gaagaactga
     4201 agattccctt cgcagccatg gtcaccgact tgcgcaaagg cacgcccctc gcgctgcgcg
     4261 acgccggcga tgtcgcgttc gcgattcgcg ccagttgctg cttgccggcg ttccacgtcc
     4321 ctgtgcgcga tggtgacgga aggcttctgg ttgacggcgg tctggtggcg aatcttccaa
     4381 tcagctacac gcgcgacctc ggcgcggaca ttgtgatcgc cgttgacgta ggcgccgacg
     4441 gcgcgcggtt catggaagct ccgcgcacgg cactcggcgt gctcacgcta gtctttgtcg
     4501 ccgtcgagcg cgtggtgtcg aatcaggaga gcaaggacgc tgatctcatc atcatcccga
     4561 aagtgggcca cattcggtgg gacgaaaccc ggcgcgccga tgaattgttg acggccggat
     4621 acgacgcgac gctggaatcg attgaaagta tcaaagaact tattgagcga tatgctttga
     4681 accagaagcc atcggagtcc ttcgtttaga aggcggactt gtccgcctgg cgttgcaatg
     4741 ccggacaagt ccgggatcta aacgagagcc gcatcggttc gcaaccattc ttccgccctg
     4801 catcctcaag aattcagctt ccattcgcag tttcataaag taacggattg aactgatgga
     4861 tcgctctgag ttttcctatg cgtctttgcg tctttgcgtg agacacctgc tggcaaaggc
     4921 gcaaagctgc aaagctacgg accgcaatcg gaaactaaaa cactctctgc ttcgcttcgc
     4981 cctggcgatt tttctcttcg cgctagtttc tttctccatt ttcttcattc attcgtatcg
     5041 ttcttacgca gagattgttg acgctcggct ggcgcgcggt tacttaacca gccgtgccgg
     5101 gatctacgcc gcgccaagaa ctctgcgagc cggtcagaag gtttcgcgcg acggcctggc
     5161 agcggcatta agacgcgcag gctatatcga cggcgacgac gccagcgaag tttggaatgg
     5221 cagctttgcg gtgcacagcg aggcgattga gattcgtccg aacaatacga gcggctttcc
     5281 gtcagttgtc aatgtaactt tcgatcgcga cggccgcatc aacagcctca ccggcgacga
     5341 catcaatctg gattcgttca cacttgagcc agaacctttg acgaacgatg ctgcgatgaa
     5401 aagcggc
//
LOCUS       DASZZE010000193         3140 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_216048, whole genome shotgun sequence.
ACCESSION   DASZZE010000193 DASZZE010000000
VERSION     DASZZE010000193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3140)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3140)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3140
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216048"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..674)
                     /locus_tag="VHD88_03805"
     CDS             complement(<1..674)
                     /locus_tag="VHD88_03805"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HVS20943.1"
                     /translation="MSADSLFDRIYSPGRDSRVALLYESREISYQELHAATVRTAEAL
                     QALGITDGDRVAVLLNDSPEFIASFVAIVSLGAIAVPINLALGKEDQLFILRDCGACA
                     AIIEAQAAETLFPISDGPQAGSLPDLKNLLVVRRHDESEPFSIPGMNSQVFDSAQRRP
                     LANDFPIRGRENAEAFILCTSGSTGEPKGAVHRQTDIFYTNGTFCREVLRLREGDRLF
                     SSSRLP"
     gene            807..1160
                     /locus_tag="VHD88_03810"
     CDS             807..1160
                     /locus_tag="VHD88_03810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20944.1"
                     /translation="MPILKKRDHQTEFRLLLESSEPVELPPAEVADNAVLVQFDKLKQ
                     YIPELLDELRLGTMAEPVAVMNDGSTFAIHGATRTFWVKLWHSAGSELTKVERVQVIS
                     CLPSTRGTNVIIGDE"
     gene            1229..2626
                     /locus_tag="VHD88_03815"
     CDS             1229..2626
                     /locus_tag="VHD88_03815"
                     /inference="COORDINATES: protein motif:HMM:NF014069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HVS20945.1"
                     /translation="MDTPQRILDLAKAVRDDGGRALLVGGCVRDELMGKQPKDWDVEV
                     YGIEPARLRKLLDQFGSVNVVGEAFTIYKLGANLDVSLPRRERKTGRGHRAFFIEGDP
                     TMTIEDAARRRDFTINAILQDPLTGEIIDPFQGHTDIERGILRAVSVDTFAEDSLRVL
                     RAAQFAARFEFRIEPETASLCRTIDLSDLPSERIWGEVEKLLLRAQRPSIGLVWLHAL
                     AVLDQLFPEIKALIDVPQDPEWHPEGEVFVHTRLVVDRARELIDDLPYAKQVTVMLAA
                     LCHDFGKPATTEFVDGRLRSRGHEEAGVEPTLSLLNRLNLHTLDGYDVRAQVIALVRD
                     HLKPGEYFKKRDEVGDGAFRRLARKCELDLLYRVAKADSLGRNADWIPREKWFNSAAQ
                     EWFIGRARELEVEAKAPAPLLLGRHLLEMGLEPGPRIGEITRAVYEMQLDGRVMNVDE
                     ARAAAKKILATDEHG"
     gene            2758..>3140
                     /locus_tag="VHD88_03820"
     CDS             2758..>3140
                     /locus_tag="VHD88_03820"
                     /inference="COORDINATES: protein motif:HMM:NF014790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HVS20946.1"
                     /translation="MIDLELTDDHEALMQTVREFAQREFAPYIKEWDEKQEFHREVFD
                     KMAELNLLGVCIPEEYGGAGFDYISLGLVCEELEAVDTFLRVAMSVHTGLNSLTLYAW
                     GTDEQKQKYLVPQAKGEKLATYGLT"
BASE COUNT          689 a          801 c          951 g          699 t
ORIGIN      
        1 aacggcaagc gcgacgaaga gaagagccga tcgccttcgc gcaaacgtaa cacctcgcga
       61 cagaaagttc cgttcgtgta gaagatgtcc gtctggcgat gcaccgcgcc tttcggttcg
      121 ccggtgctgc ccgatgtgca gaggatgaac gcctcggcat tttctcttcc gcggatagga
      181 aagtcattcg cgagcgggcg gcgttgcgcg ctgtcaaaaa cttgtgagtt catcccggga
      241 atcgaaaacg gctctgattc atcgtgtctg cggacgacga gcaagttttt caaatcaggc
      301 aggctgccag cttgcgggcc gtcagagatt ggaaacaaag tttctgctgc ttgcgcttcg
      361 atgattgccg cgcaggcccc gcaatctctc aaaatgaaaa gttgatcctc cttgcccagg
      421 gccagattga ttggcacggc gatcgctccg agcgagacga tcgcgacgaa cgaggcaatg
      481 aattcgggcg agtcgttcag caagacggcg actcggtcac catctgtgat tccgagcgct
      541 tgcaacgctt ccgctgtgcg tacggtcgcg gcgtgaagtt cttgataact gatttcacga
      601 ctctcgtaga gcagggctac gcgcgaatcg cgcccaggcg aataaattcg atcgaagaga
      661 ctgtcagcgc tcataacggc aaaagtaaga gtggcgcgat tatatctggt tgcgaagtgc
      721 agactaaagc tggcgacccg gtcgcaccgc ctcccgctcg ccttttcatt ttgagagttg
      781 cgcgaggctg tggtttgatt gtatcgatgc caattcttaa gaagcgcgat catcaaaccg
      841 agtttcgcct gctgctcgag tcgagcgagc cggtcgaact gccgcccgcg gaagttgcgg
      901 acaacgcagt cctggttcag ttcgataagc tcaagcaata catccctgaa ttgctcgatg
      961 aattgcgcct ggggacgatg gccgagcccg tagccgtcat gaacgacgga tcgacgttcg
     1021 caattcacgg cgcaacgcgg actttctggg tgaagctctg gcactcggcc ggttcagaat
     1081 tgacaaaggt ggagcgggtc caggtgatca gttgcctgcc atcgacgcgc ggtacgaatg
     1141 tgataattgg tgacgagtga gaagtgtgga gtgacagtga caagacacgt ttagaggcgg
     1201 gctactgccc gcctttatgc tgacgctgat ggacacgcct caaagaatcc tggacctggc
     1261 taaggccgtt cgcgacgatg gtggtcgcgc gttgctggtc ggcggctgtg tgcgcgacga
     1321 gttaatgggt aagcagccga aggactggga tgtcgaggtt tatggaattg aaccggcgcg
     1381 actccgaaaa cttctggatc agtttggcag cgtcaatgtc gtcggcgagg cgttcacgat
     1441 ctacaagctc ggcgcgaatc ttgacgtctc gctgccgcgt cgcgaacgca agactggccg
     1501 cgggcatcgc gcgttcttca tcgaaggcga tccgacgatg acgattgaag atgcggcgcg
     1561 ccggcgcgac tttaccatca acgcaattct gcaagacccg ctcaccggcg agatcatcga
     1621 tccatttcag ggacatacag acattgaacg cgggattctg cgggctgttt cagttgatac
     1681 atttgctgaa gacagcctgc gcgtattgcg tgccgcgcag tttgccgcgc gcttcgagtt
     1741 taggatcgaa cctgaaaccg cctccctctg tcgaacgatc gatctttctg atttgccaag
     1801 cgaacgcatc tggggtgagg tggaaaagct gctccttcgt gcgcagcgcc catcgattgg
     1861 gttggtttgg ctgcatgctt tggctgtgct cgatcaacta ttcccagaga tcaaagcgct
     1921 gatagacgtg ccacaggacc ctgagtggca ccctgaaggc gaggtttttg ttcatacccg
     1981 acttgttgtc gatcgcgcgc gcgaattgat tgacgatctg ccttacgcga agcaagtcac
     2041 ggtaatgctg gcggcgttgt gccacgattt cggcaagccg gcgacgactg aatttgttga
     2101 cggtcgcttg cgttcgcgcg gtcacgagga agcgggagtc gagccgacgc tgagccttct
     2161 caataggctg aaccttcaca cgctcgatgg gtacgatgtg cgcgcccagg tcatcgcgct
     2221 ggttcgtgat catctgaagc ctggcgaata ttttaagaaa cgcgacgagg taggcgacgg
     2281 cgcgtttcgc cggctggcgc ggaaatgcga acttgacctg ttgtatcgcg tcgcgaaagc
     2341 ggattcgctg ggtcgcaatg ctgattggat tccgcgcgag aagtggttca actcagcagc
     2401 gcaggagtgg ttcatcggcc gcgctcgtga gttagaagtt gaagcgaaag ctcccgcgcc
     2461 gcttttgctt ggtcggcatc ttttggaaat gggcctggag cccggcccgc gcatcggcga
     2521 aatcacgcgc gccgtttatg agatgcaatt ggatgggcga gtgatgaatg ttgacgaagc
     2581 acgggccgca gcaaaaaaaa tattggccac agatgaacac ggatagacgc tgataagagt
     2641 taagcacatt tctcaattgg acatggagag tttctccgtg taactctgtg tgtcctctgc
     2701 gatctctgtg gtgaaatcat ccagcgatag aattaacttt cgaaggaact acgcacaatg
     2761 attgacctcg aacttaccga cgaccacgaa gctttgatgc agaccgtgcg cgagtttgcg
     2821 caaagagaat tcgcgcccta catcaaggaa tgggacgaga agcaggagtt ccatcgcgaa
     2881 gtgttcgaca agatggccga gttgaatctg ctcggcgttt gcattcctga agagtatggc
     2941 ggcgccgggt tcgattacat ttcgctcgga cttgtctgcg aagaattgga agccgttgac
     3001 actttcctgc gcgtggcgat gtctgtacac actggtttga attcattgac gctttatgcg
     3061 tggggcacag acgagcaaaa gcagaagtat cttgtgccgc aggcgaaagg cgaaaagctg
     3121 gcgacttacg gtttgactga
//
LOCUS       DASZZE010000194         2258 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_248320, whole genome shotgun sequence.
ACCESSION   DASZZE010000194 DASZZE010000000
VERSION     DASZZE010000194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2258)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2258)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2258
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_248320"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2258
                     /locus_tag="VHD88_03825"
     CDS             <1..>2258
                     /locus_tag="VHD88_03825"
                     /inference="COORDINATES: protein motif:HMM:TIGR01733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HVS20947.1"
                     /translation="GELPVLELPTDRPRPAMQTYPGARVGLMLSRELSQALVALSQRE
                     GVTLFMTLLAGFKVLLHHYTAQDDIIIGSPIANRPRAETEKLIGFFLNNLALRTDLSG
                     DPSFQKLLSRVRQTALDAYANQDVPFEKIIEELKPERDLSRSAIFQVYFNLFSFSDEI
                     ELPGATPQTISFVDAWLHSEENQSKFDLTLYAGLQDETLKLAFVYNSDLFEENSITRM
                     LEHLQTLLTAAVADPETPISDYALSGKSAISIEANDIRPAHAFTKFERSEIEQPITKR
                     FEAQVRKHPARIAVKTANHEWSYAQLNAKANQIAHSILELVGDSEARIALLFAHDAPM
                     IAGMLGVLKAGKTYVPLDPSYPVERLSQLLGDSQATAIVTNEKNLELARRLTGVVVLN
                     VDALDSSVPSSDLNLEIDPRGLAYILYTSGSTGQPKGVMQNHRNVLHFIRAYTNNLHL
                     NAGDRLTLLSSYCFDAAVMDIYAALLNGATLYPLDIKEEGFCALCETLSEQGITIYHS
                     TPTVYRYFVSEMQGRNPTVREGASSHAGTLPDGRVSALRLVVLGGEEVTPSDVELYRK
                     NFTDDCLLVNGLGPTESTVSLQYFINKQTAISSERVPVGYPVDDTEVFLVSRAGKRAE
                     MYGEIAIKSEHVALGYWRNNAATDAAFLRNGSSARVYRTGDMGRRRPDGSIIFAGRKD
                     LQVKIRGVRVEPGEIESALAKLSSVRECAVIATANGVRDRRLIAYVVPHQGESLVTSD
                     LRSWLRGKLPDY"
BASE COUNT          494 a          632 c          654 g          478 t
ORIGIN      
        1 gcggcgagct gccggtgctt gagttgccga cggatcgccc gcggccggcg atgcagacct
       61 atccgggcgc gcgcgtcggc ctgatgttat caagagagct gagccaggcc ctggtcgcgc
      121 tcagtcaacg cgagggcgtc acgttgttca tgactctgct ggccgggttc aaggtcttgc
      181 ttcatcacta cacggcgcag gacgacatca tcatcggctc gccgatcgcc aaccgcccgc
      241 gcgctgaaac cgaaaagttg attgggttct ttctgaacaa tctcgcgctg cgcacggatt
      301 tgtcgggcga ccccagtttt cagaaactgc tgtcgcgcgt gcgccagacc gcgctggatg
      361 cgtacgcgaa tcaggacgtg cccttcgaga aaataatcga agagctgaaa ccggagcgcg
      421 acctgagtcg ctcggcgatc ttccaggtct atttcaatct cttcagcttt agcgacgaga
      481 tcgaactgcc cggggcgacg ccgcagacga tcagttttgt ggacgcgtgg ctgcattcgg
      541 aagagaacca atcaaagttt gatttgacgc tgtacgccgg cctgcaggac gaaacgctga
      601 agctggcgtt cgtttacaac agcgacttgt tcgaagaaaa ctcgatcacg cggatgcttg
      661 agcatcttca gactttgctg acggcagccg ttgccgatcc cgaaaccccg atttctgatt
      721 acgcgctctc gggcaagtcc gcgatttcaa tcgaggcaaa cgacattcgt ccggcgcatg
      781 cgtttacgaa attcgaacga tcagaaattg agcagccaat cacgaagcgt tttgaagctc
      841 aagtcagaaa acatccggcg cggatcgccg tcaagaccgc gaatcacgaa tggtcttatg
      901 cacagctaaa cgcgaaagcc aaccagatcg cccattcgat tcttgaactc gtcggagaca
      961 gcgaagccag aatcgcgctg ttatttgcgc acgacgcgcc catgatcgcc ggcatgcttg
     1021 gcgtcttgaa agccggaaag acttatgtcc cgcttgatcc gtcttatccg gttgagagat
     1081 tgtcgcagct cttgggtgac tcgcaggcga ccgcgatcgt aacgaatgaa aagaatctgg
     1141 agctggcgcg aaggctgacg ggcgttgtcg tgctcaacgt cgacgctttg gattcgtctg
     1201 ttcccagcag cgacttgaat ctggaaattg atccgcgcgg tctggcttac atcctctaca
     1261 cgtcaggttc gaccggacaa ccgaagggcg tgatgcagaa ccaccgcaac gttctgcact
     1321 tcattcgcgc gtacacgaac aacttgcacc tcaacgccgg cgaccgcctg actttgcttt
     1381 cctcgtattg ctttgacgcg gcggtgatgg atatttacgc ggccttgttg aatggcgcga
     1441 cgttgtaccc gctcgacatt aaggaagaag gcttctgcgc gctgtgcgaa acgctgagcg
     1501 agcagggaat cacaatctat cattcgacgc ccacggttta tcgctacttc gttagcgaga
     1561 tgcaaggcag aaacccgacc gtcagggagg gtgcttcttc acatgctggc accctccctg
     1621 acggtcgggt ttctgccttg cgtttagtcg tgctcggtgg cgaagaagtc accccgagcg
     1681 atgtcgaact ttaccgaaag aatttcaccg atgattgttt gctggtcaac ggactcggcc
     1741 ccacggaatc aaccgtgagc ctgcaatact tcatcaacaa gcagacagca atctccagcg
     1801 aaagagttcc ggttggttat ccggtcgacg acacagaagt tttcttggtc agccgtgcgg
     1861 gcaaacgcgc tgagatgtac ggcgagatcg caatcaagtc ggaacacgtg gcgctgggtt
     1921 actggcgaaa caatgcggcg accgacgcgg cctttctgcg gaacggatcg agcgcgcgag
     1981 tatatcgcac cggcgacatg ggacgccgcc ggcccgatgg cagcattatc tttgccggca
     2041 gaaaagatct tcaggtcaag atcagaggcg tgcgggtcga gcccggcgag atcgaatcag
     2101 cgctggcgaa actttccagc gtacgcgagt gtgccgtcat cgctacggcc aacggcgttc
     2161 gtgatcggcg actgatcgcc tatgtggtcc ctcatcaggg cgagtcgtta gttacaagcg
     2221 atctgcggag ttggttgcga ggaaagttgc cggactac
//
LOCUS       DASZZE010000195         2668 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_266481, whole genome shotgun sequence.
ACCESSION   DASZZE010000195 DASZZE010000000
VERSION     DASZZE010000195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2668)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2668
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_266481"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..870)
                     /locus_tag="VHD88_03830"
     CDS             complement(<1..870)
                     /locus_tag="VHD88_03830"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: protein motif:HMM:NF013528.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004527 - exonuclease activity [Evidence
                     IEA];
                     GO_function: GO:0008441 - 3'(2'),5'-bisphosphate
                     nucleotidase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional oligoribonuclease/PAP phosphatase
                     NrnA"
                     /protein_id="HVS20948.1"
                     /translation="MLSQVVELIEKKDRFAITSHVRPDGDSLGSSLGLYWLLRALDKD
                     VEVIMRDTAPHSYRKLPGAEAIRVTPSVDRAYDTVFVIECSDIDRPGLIDLEKQFVVN
                     IDHHSTTELFGAVNWIDPTASAVGEMIYNLCKATGVRVTKEIAECVYTALLTDTGSFH
                     YSNTTERTFKIASELVRTGVRPAKSAEAIFGSYQWPKIELLSQVLATAKRDDSGHVAL
                     MRQTLAMQEQTKASDEDSDGFVNYPLSVGEVEAAALFKECSPGVYRTSLRSKGDVNVA
                     KVAEQFGGGGHRNA"
     gene            complement(952..1389)
                     /gene="rbfA"
                     /locus_tag="VHD88_03835"
     CDS             complement(952..1389)
                     /gene="rbfA"
                     /locus_tag="VHD88_03835"
                     /inference="COORDINATES: protein motif:HMM:TIGR00082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HVS20949.1"
                     /translation="MNDECRITRSYFIVPRSSFILAVMHRPERIADTMREEIAQIVGY
                     ELEDPRLTMVTVTEVRVADDLRDASVYVTVQGDEQEHLMALRALRHAAPYVRKQLGFS
                     LNLRHTPALHFVRDTVEEEAARVDALLETIEHPTEGIKDEIKG"
     gene            complement(1392..1877)
                     /locus_tag="VHD88_03840"
     CDS             complement(1392..1877)
                     /locus_tag="VHD88_03840"
                     /inference="COORDINATES: protein motif:HMM:NF024966.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HVS20950.1"
                     /translation="MKHSTLLFALTIGLAVASLQTAAAQTDRSNDANIAAARKAIDAG
                     NAEWIAGWKAADAEKMASLFDKDGSQFGAKGEVIRGRDAIHYRFSEGFKANGPALDFT
                     ITTLEVWLVDDLAYESGNFTGKVQPKGEDVINFSGKYVTIWKRQRDGSWKIWVDFGVP
                     E"
     gene            complement(2097..>2668)
                     /locus_tag="VHD88_03845"
     CDS             complement(2097..>2668)
                     /locus_tag="VHD88_03845"
                     /inference="COORDINATES: protein motif:HMM:NF023413.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20951.1"
                     /translation="QKMSTERVKVKVVRSGVGAITESDVLLASATQAGSASTAVVIIG
                     FNVRPESRAGDLAKQESVDIRLHSIIYKVEEEIKAAMIGMLEKIEKEKILGKAEVREV
                     FKVPKAGSIAGSMVIDGIMKRNARARLIRDAVVSWEGNIGSLRRFKDDASEVREGFEC
                     GIGLENFNDIKVGDQIECYVIEKVAATEL"
BASE COUNT          539 a          746 c          732 g          651 t
ORIGIN      
        1 agcgttgcga tggccgccgc cgccgaactg ctcggcaact tttgcgacgt tgacatcgcc
       61 tttcgaacgc aggctggtgc gatagacacc cggcgagcat tctttgaaaa gtgcagcagc
      121 ttcgacttcg ccaacactca aaggatagtt gacgaagccg tccgaatctt catccgaagc
      181 tttcgtttgc tcctgcatcg ctagcgtctg tcgcatcaac gcgacgtggc cgctgtcatc
      241 tcgctttgcg gtggcgagca cctggctgag caattcgatc ttcggccact gatagctacc
      301 gaaaatcgct tccgcgctct tggctgggcg cacgccggtg cgcacgagtt cggacgcgat
      361 tttgaaagtg cgctcggtcg tgtttgagta gtgaaacgat ccggtgtcgg tgagcagcgc
      421 ggtatagacg cattcggcga tttctttcgt gacgcggacg ccggttgctt tgcaaaggtt
      481 gtaaatcatc tcgccgacgg ctgaggcggt cggatcgatc caattgaccg cgccaaacag
      541 ttcggtcgtc gagtggtgat cgatgttgac gacgaattgt ttttcgagat caatcaagcc
      601 gggccgatcg atatcggagc actctatgac gaagactgtg tcgtaggccc gatcgactga
      661 gggtgttacg cggatggctt cggcgccggg aagctttcga tacgaatgcg gcgccgtgtc
      721 gcgcatgatg acttcgacgt ctttgtcgag cgctcgcagc agccagtaga ggccgaggga
      781 tgagccaaga ctgtcgccgt cagggcgaac gtgagaggta atcgcaaagc ggtccttctt
      841 ttcaataagt tcaactactt gactaagcat cgaaagcaag gatgaacgat gaagggtgaa
      901 ggatgaaaaa cgagagcgag attatcgctt tcatctttcg tccttccgcc tttatccttt
      961 gatttcatcc tttatccctt ccgtcgggtg ttcaattgtt tcgagcagcg catcgacgcg
     1021 tgcagcttct tcttcgaccg tgtcgcgtac gaagtgaagc gcgggagtat gccgcaaatt
     1081 cagtgagaag ccaagttgct tgcgtacata gggtgccgcg tggcgcagtg cgcgcaaagc
     1141 catcaagtgt tcctgctcat cgccctgcac cgtgacgtaa acgctggcgt cacgcagatc
     1201 gtctgcgact cgaacctcag taactgtgac catcgtcaag cgcggatctt ccagctcgta
     1261 gccaacgatt tgcgctatct cttcgcgcat ggtatcggcg atgcgctcgg ggcgatgcat
     1321 aactgcaagg atgaacgatg aacgcggaac gatgaaataa gaccgtgtga ttctgcattc
     1381 atcgttcatc gttattctgg aactccaaaa tccacccaaa tcttccacga gccgtcgcgc
     1441 tggcgcttcc agatggtgac gtacttgccc gagaaattga tcacgtcttc acccttcggc
     1501 tggaccttcc cggtgaagtt gccggactcg taagcgagat catcgacgag ccaaacttcg
     1561 agtgtggtaa tcgtgaaatc cagcgcgggt ccgttggctt taaatccttc cgaaaagcga
     1621 tagtggatag cgtcgcgacc gcgaatgacc tctccttttg cgccaaactg cgagccatct
     1681 ttgtcgaaga gtgacgccat cttctcagcg tcagcagcct tccatcccgc gatccactcg
     1741 gcgtttccgg cgtcgatggc tttgcgggcg gcagcgatgt tggcgtcgtt tgatctgtct
     1801 gtttgtgccg cagctgtttg cagcgacgca acggccaatc cgattgtcag ggcaaataag
     1861 agtgtcgagt gtttcatggt attggtcgcg atcgatttgc gtttgcaagc gccgttaggc
     1921 gcgcaatgtt tatagaaccg cagcccgctt tcttttcctc gcaggttcga agccgttgct
     1981 tcgaacctgc gagactgaat ctcaaaatgt cgtcggatct ataaacattt cgtgcctagc
     2041 gcacgttttg cctactgcct actgctcagt gcctactgct cagtgcctac tgcttctcac
     2101 aactccgtcg cagcaacctt ctcgatcacg taacactcga tttgatcgcc gaccttgatg
     2161 tcgttgaaat tctcaaggcc gatgccgcat tcgaagcctt cgcgcacttc ggaagcgtcg
     2221 tccttgaatc gtcgcagcga gccaatgttg ccttcccagc tcacgacggc gtcgcgaatc
     2281 aagcgcgcgc gcgcgttacg cttcatgatg ccgtcgatga ccatagaacc ggcgatcgat
     2341 ccggccttcg gtactttaaa gacctcgcgc acttctgcct tgccgagaat cttttccttc
     2401 tcgatcttct cgagcattcc gatcatcgcc gccttaatct cttcttcgac tttgtagatg
     2461 atcgagtgca gacgaatgtc cacgctctcc tgcttggcga ggtcgccggc gcgcgattcg
     2521 ggtcgcacgt taaagccgat gatcacgacc gcggtggatg cggagccggc ttgagtggcc
     2581 gacgcgagca agacgtcaga ttcagtgatc gcgcccacgc ctgagcggac aacttttacc
     2641 ttgacgcgct cagtggacat cttttgca
//
LOCUS       DASZZE010000196         2473 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_88884, whole genome shotgun sequence.
ACCESSION   DASZZE010000196 DASZZE010000000
VERSION     DASZZE010000196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2473)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2473)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2473
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88884"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..396
                     /locus_tag="VHD88_03850"
     CDS             <1..396
                     /locus_tag="VHD88_03850"
                     /inference="COORDINATES: protein motif:HMM:NF037785.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20952.1"
                     /translation="VYLAGKAAHDAGAHHIGISPAADELEHKDRYRLPTDSCDAIIYT
                     GFGLKGRNVVLVRSCDVVLFIAGSIGSLNEFTIAYDEGKIIGCLTGTGGVADETERLL
                     EVFKKETKARVFYDADHVRLIDTCLARVP"
     gene            566..1357
                     /locus_tag="VHD88_03855"
     CDS             566..1357
                     /locus_tag="VHD88_03855"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HVS20953.1"
                     /translation="MDFGLKDRVALVAAASRGIGYAAARELAREGARVFLCSRDEQRA
                     SEAAQKIHEETGADVAGIAADVTNEKESEQFVNVALERAGRVDICVTNAGGPPSTVFA
                     DTDIEMFRQAFELNGLSAIRLAKLVMPGMRERKWGRIINITSISVKQPVDGLLLSNTV
                     RAGLTGWAKTVSNEVAADGVTVNNVAPGYTLTERQDELAEARSKAMGKSKQELIELWS
                     AQTPMRRMAAAEEIAAAIAFLASERASYITGVTLQVDGGWVRGLL"
     gene            complement(1386..>2473)
                     /locus_tag="VHD88_03860"
     CDS             complement(1386..>2473)
                     /locus_tag="VHD88_03860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20954.1"
                     /translation="PNSIPAFPLPTPPPRPQPAASPAPGQPSPTPTPAAPTADQIVAK
                     YIDAIGGQAAIDNMKTRVMKGTYAGFNGAPLTFEADLTAPDKFYISVTTQQGTNERGF
                     DGKVGWEKNARGVNELTNPILDQMKSMFLSFRNLKLKEEFTSMRLGGKDKIGDRDVLI
                     IGGRTADNHRERLFFDAETGLLLRRIAYTETMIGVIPEQIDSEDYRDVDGVKLPFTVR
                     VSSVEPGLVSARKYTEIKLNVPVDDSKFKMPAAPAKPASPPDLSRADDSELRRHLGES
                     VTMHGRFSLRGKIGPFILVDGRPVYLVSSGSFVWDRNYEKLEGLAVRVTGTLRFAHYP
                     DATQDPLPVARVPDHFYFEAETARVEP"
BASE COUNT          523 a          689 c          726 g          535 t
ORIGIN      
        1 gtttatctcg caggaaaagc tgcgcacgat gctggcgcac atcacatcgg catctctccc
       61 gcggccgatg aacttgaaca caaggatcgc tatcgtttac caaccgactc gtgcgacgca
      121 atcatctaca ccggttttgg attgaaaggc cgcaacgttg tgctggtgcg ctcgtgcgac
      181 gtcgtgctgt tcatcgccgg ttcgattggc tcgctaaacg aattcacaat cgcttacgac
      241 gaaggcaaga tcatcggatg cttgaccggg accggaggcg tcgctgatga aaccgagcgt
      301 cttttagaag tcttcaagaa ggagacaaag gcgcgggtgt tttatgatgc cgatcacgtt
      361 cgtcttatcg acacgtgcct tgctagagtc ccgtagggac gagatgttta tagccaacgg
      421 atgcattctc atccttaagc ccattcatgg gcggcagaaa catttcgctc cttcggagct
      481 ttgaaatcat tggtaggcat gcactataaa tatttcgcca ctacgtggct ggaacacgcg
      541 catcgcacgg cgaaaggaaa ctaatatgga cttcggattg aaagatcgtg ttgctctagt
      601 cgccgccgcc agccgtggca ttggctacgc agccgcacgt gagttagctc gcgagggcgc
      661 gcgcgtgttt ctctgttcgc gggatgagca acgcgcatcg gaggccgcac aaaaaattca
      721 tgaagagacc ggcgcggacg tggcaggcat cgctgccgat gtcacgaacg aaaaagaatc
      781 agagcagttc gtcaacgtgg cgctggaacg cgcgggccgt gtcgatattt gcgtcaccaa
      841 cgccggtggc ccgccctcga cggttttcgc cgacaccgac atcgagatgt ttcgtcaggc
      901 gtttgaactc aacgggcttt ccgcgatcag actagcaaag ctggtgatgc cgggaatgcg
      961 cgagcgcaag tggggacgaa tcattaacat cacttccatt tccgtgaagc agccggtcga
     1021 tggcttgctg ctgtcgaaca ctgtgcgcgc cggtttgacc ggctgggcca agaccgtctc
     1081 taacgaagtg gccgccgatg gcgtgaccgt gaacaacgtc gcgccgggtt acacgctcac
     1141 cgagagacaa gacgagttgg ccgaagcgcg cagcaaagca atgggaaaat caaagcagga
     1201 gttgatcgaa ctctggtcgg cgcaaacgcc gatgcgtcgc atggctgcgg cggaagagat
     1261 cgccgcagct attgcgttcc ttgcttccga acgcgcgtct tacatcaccg gcgtgacgct
     1321 gcaagttgac ggcggctggg tgcgcgggtt gctttgagtt gaaagaaaga agtttcgtct
     1381 tgccttcacg gctcaactct agccgtctct gcctcgaagt aaaagtggtc aggtacccgc
     1441 gcaacaggca aaggatcctg agtcgcgtct ggataatgag caaacctcag cgtgccagtc
     1501 acgcgcacgg ctaacccctc cagcttttcg taatttctat cccatacgaa agagccgctt
     1561 gacacaaggt aaacgggacg accgtcaacc aggatgaacg gcccaatctt gccacggagt
     1621 gagaaccggc catgcatggt aacgctttcg ccaaggtgtc gtcgcaactc gctgtcgtcc
     1681 gcgcggctca agtccggcgg gcttgccggc ttcgctggcg ccgccggcat tttgaacttc
     1741 gaatcgtcca ccggcacgtt tagtttgatc tcggtgtact ttcgggctga gaccaagccc
     1801 ggctcgacgg aagacacacg caccgtaaac ggaagcttca cgccgtccac gtcgcgataa
     1861 tcttcagagt caatctgctc gggaatcacg ccaatcatcg tctcggtgta agcgatgcga
     1921 cgcagcaaca gaccagtttc ggcgtcaaag aacagacgct cgcgatggtt gtcggcagtt
     1981 ctgccgccga tgatcaagac atcgcggtcg ccgatcttgt ctttcccgcc gaggcgcatt
     2041 gaggtgaatt cttctttgag cttgaggttg cggaaagaca gaaacattga cttcatctgg
     2101 tccagtatgg gattcgtgag ttcgttgacg ccgcgggcat tcttctccca gccgacctta
     2161 ccgtcgaagc cgcgttcgtt cgttccttgt tgcgtggtca cgctgatgta gaacttatcg
     2221 ggcgcagtca ggtcagcctc gaatgttagc ggcgcaccgt tgaagcccgc gtaagttccc
     2281 ttcatcacgc gcgtcttcat attatcaatt gccgcttgtc cgccaatagc gtcgatgtat
     2341 ttcgccacga tttgatccgc ggttggagct gccggagtcg gcgtcggact cggttggccc
     2401 ggggccggcg aagccgccgg ttgcggtcgt ggcggcgggg tcggcagcgg gaacgccgga
     2461 atgctgttcg gct
//
LOCUS       DASZZE010000197         3867 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_168672, whole genome shotgun sequence.
ACCESSION   DASZZE010000197 DASZZE010000000
VERSION     DASZZE010000197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3867)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3867)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3867
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168672"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2073
                     /locus_tag="VHD88_03865"
     CDS             <1..2073
                     /locus_tag="VHD88_03865"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HVS20955.1"
                     /translation="YSDARFHLIRQPNAGPGSARNAGLVQAGGEFIAFLDADDEWLPN
                     YLQESVSQLERFGSEVASVTSGYIEHPSGASTESMWRKRGLVDGVHRVQPDTEAPLVV
                     SMLAYMSPCSTLTRAEVIRKWGGFYDREKCAFGEDAFLWLKVLLNETVAFNLKPLVQF
                     HREASGLSKNLNGSRPVEPFLEDATEIESACPPALRDLLSQVLAIRAAKTACVLGYWG
                     QWREARSLARRFTSARNWRLPYHASAVVCSTPVGSVLGASWRAIYRTARSSERVTWNQ
                     NGHSASTVTPDSGLRTHNSKLTILAIVEATTVNAVARNMFEFHRAAQELALHSPDAPV
                     IELSLATFDRNSVLEARPSGRAPSDNEFVVAARDAGIEIDVIPERGRFDRSVIRALRK
                     IVAQRSPDVIVTHQVKSHFLMKVSGLWKKYPWVAFNHGYTTTDRKMLLYNRLDRWSLP
                     RADRVVTVCETFAKHLVNMGIPRARIHVQHNSIRPEPSVSAPEMYAFRRKLGVKNDER
                     MILAVGRLSREKAQIDLLHAFKKLSDTDAELNARLVIVGDGPERENLEMTAASLGISD
                     RVIFTGQVKNVEVYYAAADVLANPSDSEGSPYVLLEAMSANLPIVATAVGGVPEMVEN
                     NQTALLVPASDPQALADAIARVLKDEQLAQRLAASASTLGTFRFSPERYVRSLAKIYR
                     EVTSSRTV"
     gene            complement(2070..3542)
                     /locus_tag="VHD88_03870"
     CDS             complement(2070..3542)
                     /locus_tag="VHD88_03870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20956.1"
                     /translation="MLQSQEPQRLILMIVCAVVLLASIQTRNTSSESLDRLPKDRPAG
                     PAAKTTMRDGGIRTDRRVYRKPPLPQLPRAGGKFIDPVFDTEIMRATDEADGPAPGLG
                     TYYSHWPTFNANNTRLLIRKGHTGEAILKKFDPVNFRLGAGREILPTEYPRGFGLTWE
                     SAIWSHSNPEVIYTFANDLKGGMRLYAYNVARKEFKLLKDFSFLSRGRPDFLHQMNMS
                     ADDDVFSWSHMRTKNNGDGDPIAYLVWRRSTDKVLFDTPNTMDLNEVHVDKSGHWLSI
                     ELNKPLPDGDAMEFLNLDMGVVTKIVSGAPDYQPGHGDLGTDCIVGFDAWLDGINWRR
                     LSAPHAVRHVFFFRTAIGRNGGVTDWTHGFHGTMLADNEDWITIATFHDPSATQIGSG
                     IYDDEILQVSLDGSERIRRLCHTRCVIDNKTETTGYWAMPKPTISRDGRFIAFTSNWE
                     NSGRYDLFIARIDPAPRLNQMQAAPSPSPTAQRPRRVRPA"
     gene            complement(3555..>3867)
                     /locus_tag="VHD88_03875"
     CDS             complement(3555..>3867)
                     /locus_tag="VHD88_03875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20957.1"
                     /translation="LPRLLKTPFAVGAIAPEEMKAMLRSLLTLKPGEYVRSWTQYDQH
                     RGMSRWRDIIDWVGGYPYEVAKPEEIFDFYRAQGFRLTKMKCGGVGLGCNQFVFVKDS
                     F"
BASE COUNT          815 a         1131 c         1090 g          831 t
ORIGIN      
        1 tattctgacg cgcgcttcca tctgattcgt cagccgaacg ccggaccggg ctcagcgcgc
       61 aatgctggcc tcgtgcaggc aggcggcgag ttcatcgctt ttctcgatgc tgatgacgag
      121 tggctcccga attatcttca agagagcgta agccagcttg aaaggtttgg ttctgaagta
      181 gcgtcagtga cctccggcta catcgagcat ccatcgggcg cgtcaacgga aagtatgtgg
      241 cgcaaacgcg gactcgtcga cggcgttcat cgcgtgcagc cggacaccga agcgccgctg
      301 gttgtgagca tgctcgcgta catgtctccc tgttcgactc tgacgcgcgc cgaagtcatt
      361 cgcaagtggg gcggttttta tgatcgcgag aaatgcgcgt ttggcgagga tgcttttctc
      421 tggctcaagg tcctgctgaa cgaaacagtc gctttcaatc tcaagccgct cgtgcaattt
      481 catcgcgaag cttcaggact gagcaagaac ctcaacggct cgcggccggt cgaaccattt
      541 ctcgaagacg cgaccgagat cgaaagtgct tgtccacccg cgctgcgaga tttgctttcg
      601 caggtactcg cgattcgcgc ggcgaagacg gcctgcgtgc ttggttactg gggccagtgg
      661 cgcgaagcgc gatcgctagc tcgacgattc accagcgcca ggaattggcg gcttccttac
      721 cacgcgtccg cggtagtttg cagcacgccg gtcggatcag ttttgggcgc atcatggcga
      781 gcgatttaca gaaccgctcg cagtagcgag cgggtaactt ggaatcaaaa cggccattca
      841 gcttcaaccg tgactccaga ctccgggctc cggactcaca actcaaaact cacaattctc
      901 gccatcgtcg aagccacgac cgtcaacgcg gtcgccagga acatgtttga gttccatcgc
      961 gccgcgcagg aactcgcgct acattctccg gacgctcccg ttatcgaact ctcgctggca
     1021 acgtttgata ggaactccgt gttagaagcc cgaccgtcag ggagggcccc gtctgacaac
     1081 gagtttgttg tggctgcacg cgacgccgga attgaaatcg acgtcatccc ggagcgcgga
     1141 cgctttgacc gcagcgtgat tcgcgcactc cgcaagattg ttgctcagcg ctcacctgac
     1201 gtcatcgtga ctcatcaggt caagtcgcat tttctgatga aggtttccgg gctctggaag
     1261 aaatatccgt gggtcgcttt caatcacggc tatacgacga ccgatagaaa aatgctgctc
     1321 tacaaccggc tggaccgctg gtcgctgccc agggccgacc gcgtcgtcac cgtctgcgaa
     1381 acttttgcaa agcaccttgt gaacatggga ataccgcgcg cgcgcataca cgtgcagcac
     1441 aattcgatcc gcccggaacc atcggtgagc gccccggaga tgtacgcttt tcgaaggaaa
     1501 ctcggcgtga aaaacgacga acgcatgatt ctcgcggtcg gtcgcttgtc aagagagaaa
     1561 gcgcaaatcg atctgctgca cgcgttcaag aaactaagcg acacagatgc ggagctcaat
     1621 gcgcgactcg tcatcgtcgg cgatggtccc gagcgtgaaa accttgaaat gacggccgca
     1681 tcgctgggca ttagcgatcg cgtcatattc accggtcaag ttaagaatgt tgaggtttac
     1741 tacgcagccg cggatgtgct cgcgaatccg tccgatagcg aaggctcgcc gtacgtcctg
     1801 ctggaagcga tgtccgcaaa tcttccaatc gtagccacgg ccgtcggcgg cgtgccggaa
     1861 atggttgaga acaatcagac ggcgctgctg gttcccgcca gcgatccgca agcgttggcc
     1921 gacgcaatcg cgcgcgtgct caaagacgag cagctggcgc aaagattagc agcgagcgct
     1981 tccacgcttg gcacttttcg tttctcgccg gaacgctacg tgcgatctct cgctaaaatt
     2041 tatcgtgaag tcactagcag ccgaacagtc taggcaggcc taactcggcg cggtcgttgc
     2101 gccgtcggac tcggtgatgg cgctgcttgc atttggttca gtcttggcgc gggatcaatt
     2161 ctggcgatga aaagatcgta gcggccgctg ttctcccagt tagaagtgaa cgcaatgaag
     2221 cgcccatcac ggctgatcgt cggtttcggc atcgcccaat aaccagtagt ctccgtctta
     2281 ttgtcgatga cgcagcgcgt gtgacagagg cgacgaatgc gctcgctgcc gtcgagcgag
     2341 acttgcagga tctcgtcgtc ataaattccc gatccaatct gcgttgccga cggatcgtga
     2401 aaggtcgcaa tcgtgatcca gtcttcgttg tcggccagca tcgttccgtg aaagccgtgg
     2461 gtccagtcgg tgacgcctcc gtttcttccg atcgcggtcc gaaaaaagaa gacatggcgc
     2521 acggcgtgcg gcgcactcag acggcgccag ttgatgccgt ccaaccacgc gtcaaaaccg
     2581 acgatgcagt cggtgccgag gtcgccgtgg cccggctgat aatccggcgc gccgctcaca
     2641 atcttcgtca ccacgcccat atccagattc agaaactcca tcgcatcgcc gtccggcagc
     2701 ggcttgttga gctcaatgct gagccagtgt ccgcttttgt ccacgtgcac ctcgttcaag
     2761 tccatcgtgt tcggagtgtc gaacaaaacc ttgtcagttg agcgacgcca cactagataa
     2821 gcgatcgggt cgccatcgcc attgttcttc gtgcgcatgt gactccacga aaacacgtcg
     2881 tcgtcggcag acatgttcat ctgatggagg aagtcaggtc ggccgcgcga taggaaacta
     2941 aaatccttca agagcttgaa ttctttgcgc gcgacattgt aagcgtagag acgcatgccg
     3001 ccttttagat cgttcgcgaa ggtgtaaatc acttcggggt tggagtgcga ccagatcgca
     3061 ctctcccagg taagcccaaa cccgcgtgga tactcagtcg gcaaaatctc gcgacccgcg
     3121 ccaagtctga aattcaccgg gtcgaacttc tttaagatcg cttcgccggt gtgtcctttg
     3181 cgaatcagca gtcgcgtgtt gtttgcattg aacgtcggcc agtgcgaata gtacgtgccc
     3241 aaccccggcg cgggaccgtc cgcttcgtcc gtggcgcgca tgatctctgt gtcgaaaact
     3301 ggatcgatga acttgccgcc cgcgcgtggc agttgcggca gtggcggttt ccgatagaca
     3361 cgccggtcgg tcctaattcc cccgtcgcgc attgtggttt tcgcagcggg cccggccggg
     3421 cgatccttcg gcaggcgatc caagctctcg cttgaagtgt tgcgggtctg aattgacgcc
     3481 agtaagacga ccgcgcaaac gatcatcagg atcaatcgct gtggttcttg agactgaagc
     3541 aatttcggaa acctttagaa gctgtctttg acaaacacaa actggttgca gcccagtcct
     3601 actccgccgc acttcatttt cgtcaagcga aatccctgag ctcgatagaa gtcaaaaatc
     3661 tcttccggct tcgccacttc gtagggatag ccaccaaccc aatcgatgat gtcacgccag
     3721 cggctcatcc ctcggtgctg atcgtactga gtccatgaac ggacatactc gcccggtttg
     3781 agcgtcaaca acgaacgcag catggctttc atttcttcag gcgcgatcgc cccaaccgcg
     3841 aacggagtct tcagcaagcg cggcagg
//
LOCUS       DASZZE010000198         6159 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_248482, whole genome shotgun sequence.
ACCESSION   DASZZE010000198 DASZZE010000000
VERSION     DASZZE010000198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6159)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6159)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6159
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_248482"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..583
                     /locus_tag="VHD88_03880"
     CDS             <1..583
                     /locus_tag="VHD88_03880"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HVS20958.1"
                     /translation="LIGVSYGAIAGYLGGRLDDVMMRIVDVLYSLPYVIIVIVLLALL
                     PAKTPTGQLAELFFALGAVSWLTMARIVRGQVMSLKNQDFVLAARATGVSTPKIIFRH
                     LVPNTLGPVIVYATLTVPTVMLSEAFLSFLGLGVRPPRVSWGSLAADGAQNLAIFPWQ
                     LIFPGVAMALMLLSLNFLGDGLRDALDPQMRKQ"
     gene            601..1611
                     /locus_tag="VHD88_03885"
     CDS             601..1611
                     /locus_tag="VHD88_03885"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HVS20959.1"
                     /translation="MTTSSNGNLLKVKDLRTYFETEDGVVKAVDGVSFDLKRGETLGI
                     VGESGSGKSVANLSLMRLIPEPPGKIVAGEIIFQGRDVVKLSRREVRDMRGKQMAMIF
                     QDPMTSLNPFMRISKQLMEVTELHLGHTRKQARDHAIRMLEQVGIPDASERADSYPHE
                     FSGGMRQRVMIAMALSCRPQLLIADEPTTALDVTIQAQILELIKRLKAETGASVILIT
                     HDLGVVAGMTDRVIVMYAGKVFEQAPTAELFARPGNPYTHGLLRSVPDPTAEQGKLYQ
                     IPGQPPDLARLPAGCPFAPRCERAEDICRREFPPFVQLTTEHYSLCHFANEVYEESKG
                     QA"
     gene            1608..2693
                     /locus_tag="VHD88_03890"
     CDS             1608..2693
                     /locus_tag="VHD88_03890"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015440 - ABC-type peptide transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide/dipeptide ABC transporter
                     ATP-binding protein"
                     /protein_id="HVS20960.1"
                     /translation="MMGSETKPLISIRDLRVHFDLGGGSILGRMLGRKSNGRVVKAVD
                     GVTLDIYPGETLGLVGESGCGKSTLGRAILRLTEPTSGQVLFRGQDLAHLSQAAMRAQ
                     RRHLQIIFQDPYASLNPRMTVSQIISEPIETFRLARGQAKRRRVHELMETVGLSARFL
                     KRYPHEFSGGQRQRIGIARSLAVEPDFIVADEPISALDVSIQSQIMNLLDRLRREKAL
                     TYLFISHDLRAIRHVSDRVAVMYLGKIVELAPAKDIYAQPLMPYTKALISAVPVPDPK
                     IELTRRRIVLEGDVPSPINPPRGCRFHTRCPYAIDACRDIEPQLVEIKPNHLAACIRI
                     SPEQPDIERVAPGDAPGLRKQSAGAMA"
     gene            2803..4554
                     /locus_tag="VHD88_03895"
     CDS             2803..4554
                     /locus_tag="VHD88_03895"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HVS20961.1"
                     /translation="MARPILKRPSSEVSNVKKPITDKSTARSSPLEQKVPERAPKGWA
                     EVQESIANSSGISLLLVEGHQPPALAIANNNSICEALQSSPEHVKLCDPYCGAAHNRA
                     TSANTITHYRCHAGLQCFAMPVQISSERQLAVIGGRAFVSGADYRALAERFRSGDLQE
                     LVSDTLFRNVIFADEADLDHAALRVARAAREFQEQPSSEVSESENTPGTNADANLSAL
                     TEDRRTDAGLRRGLDRRAPFADSIRRFAEQIDASEPAQTYDSILAQSADLVTAERASL
                     LLFDEGANELTMKAALGLPEPVSAVGRIHLGEGIAGTVMREGRPIVGAIDQFGKPASP
                     ARRYKTKSFISYPIAIGNRKIGVLNLADKVGGGAYDAADLNVIELVGPQIALALERAA
                     WQQRANQFQLMSITDPLTGLHNRRYQEARLAEELSRSKRYNYPLSFMMIDIDDFKVYN
                     DRNGHQGGDRALEITAQCLRAALRKVDVASRYGGEEFAILLPQTTLQEAGVIADRVRR
                     KIMSTPYPHGKSQPLGALTVSIGLSAFSPTLDSAEAIVRAADRALYHAKSRGKNRAYA
                     YQGAPARTDQRAASQQL"
     gene            4558..>6159
                     /locus_tag="VHD88_03900"
     CDS             4558..>6159
                     /locus_tag="VHD88_03900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20962.1"
                     /translation="MTHQRILASVSREEFVGRDAELQQIVRQASWFRDRRGLLLLAAP
                     GVGAAELLRQAYDQLFSRRGDPIPIHFSFGPSDGLLDAARSFFQNFIQQYIAYRRVDP
                     SLCDASLTFHDLVELALPGDYELIATLLESFERERLAANERAFLRFCLSAPQRLSAKG
                     RNIFPLIDSTRLAKPGKGEALLAQEIAGAFARSGGPFVLSGLRRQLLDLVHRAGDGRG
                     ADEIVHLEKLSDDDARNLIESAVRRHEVESNEPTRDLIVQQLNASPFFINALIQAARE
                     TKTPLTSFLNCQRLYVDELMGGRINRHFSNILDYVAPHPQTRKTLLRVMYESASTEAR
                     KSSLWAWKKRLGVDAGEFERIIDTLHVNELANSSASSIEVNADSYVWMDYLRAHYRVE
                     VGDEPRALIVATTLLETLKRAPQAMARKYRREAALGLLDLLPSFNCQRVPASLFHYDR
                     FAAAHKGVDIESVNAALDVESDLIRLPQIVHATSLAAFASSMQFDAERGVVAHGFEAA
                     DYTDENEVVWLAAEIDSKLEASREVT"
BASE COUNT         1276 a         1769 c         1823 g         1291 t
ORIGIN      
        1 gttgatcgga gtttcttacg gcgccatcgc cggctatctc ggaggccgtc tcgacgatgt
       61 gatgatgcga attgtggacg tgctctattc gctgccttac gtgatcatcg tgattgtgtt
      121 gctggcgctg ttgccggcaa aaacgccgac gggtcagttg gcggaattat ttttcgcgct
      181 gggcgcggtg tcgtggttga cgatggcgcg gatcgtgcgc ggccaggtaa tgtctttgaa
      241 gaaccaggat ttcgttttgg ctgcgcgggc caccggtgtt tctacgccga agatcatttt
      301 tcgtcatttg gtgccgaaca cgcttgggcc cgtgatcgtt tacgcgacgc tgaccgttcc
      361 aactgtgatg ttaagtgaag cgtttctttc gttcctcggt ctcggcgtgc ggccaccgcg
      421 agtttcctgg ggcagtctgg ccgccgacgg cgcacagaac ctggcgattt tcccctggca
      481 actgatcttt cccggagtag cgatggcgct gatgctgctg tcgttgaact tcctgggcga
      541 cggtttgcgc gacgcgctcg atccgcagat gagaaagcag tgacgagtga taggtgacaa
      601 gtgacgacga gctcaaacgg aaatttgctc aaggtcaaag acctgcgcac gtacttcgaa
      661 actgaagacg gcgtggtcaa ggctgtcgat ggcgtcagct tcgatttgaa gcgtggcgag
      721 acgctgggca tcgtaggtga gtcaggctcc ggcaaatcag ttgcaaatct ttcgctcatg
      781 cgattgattc cagagccgcc gggaaaaatc gttgcgggtg aaatcatctt ccagggacgc
      841 gacgtggtga agctttcgcg ccgcgaagtg cgcgacatgc gcgggaagca gatggccatg
      901 atctttcagg atccaatgac ttcgctgaat cccttcatgc gcatatcaaa acagttgatg
      961 gaagtaactg agcttcatct tggccacacg agaaagcaag cgcgcgatca cgcgatcaga
     1021 atgctggagc aggttggcat tcccgacgcg agcgaacgtg ccgacagtta cccgcacgaa
     1081 ttctccggcg gcatgcgcca acgcgtgatg atcgcgatgg ccttgtcgtg ccgccctcaa
     1141 ctgctgattg ctgatgaacc gacgacggcg ctggatgtaa ccatccaagc gcagatcctg
     1201 gaactgataa agcgtctgaa ggcggaaacg ggcgcgagcg tgatcttgat cacgcacgat
     1261 ctcggcgtgg ttgcgggtat gacagatcgc gtcatcgtaa tgtacgcggg caaagtgttc
     1321 gagcaggcgc cgaccgcgga acttttcgcg cgaccaggca atccgtacac gcatgggcta
     1381 ctgcgctcgg ttcccgaccc tacggccgag cagggcaagc tctatcagat tcccgggcag
     1441 ccgcccgatc ttgcgcgtct tccggcgggc tgtccttttg cgccacgatg tgaacgcgct
     1501 gaagatattt gccggcgcga gtttccgccc tttgtacaac tgacgacgga acactactcg
     1561 ctctgccatt ttgcaaacga ggtctatgaa gagtcgaaag gccaggcatg atgggaagtg
     1621 aaaccaagcc gttgatttcg attcgcgatc tccgagtcca tttcgatctc ggcggcggat
     1681 cgattcttgg tcgcatgctc ggacgtaagt caaacgggag agttgtgaaa gctgtcgatg
     1741 gagtgacgct cgacatttat cccggcgaaa ctcttgggct tgtgggcgaa tcaggttgcg
     1801 gcaaatcaac cttgggtcgt gcgattctgc gattgactga gccgacttca ggtcaggttc
     1861 tgtttcgcgg tcaagacctc gcgcatttgt cacaagccgc gatgcgcgcg cagcgtcgtc
     1921 acctgcaaat tatttttcaa gacccttacg cttcgcttaa tccgcgtatg accgtgagtc
     1981 agatcatcag cgaacctatc gaaacgtttc ggctggcgcg tggccaggca aagcggcgcc
     2041 gcgtgcacga gttgatggag actgttggtc tgagcgcgcg tttcctcaag cgctatccgc
     2101 atgagttttc cggcggccag cgccagcgca tcggcatcgc acgctctctg gccgtcgagc
     2161 cggacttcat tgtcgccgac gagccaatct ccgcgcttga tgtttcgatc caatcgcaga
     2221 tcatgaatct gctcgatcgc ctgaggcgcg aaaaggccct cacgtatctt ttcatctcgc
     2281 atgatctccg agcgattcgt cacgtctcgg atcgagtggc cgtgatgtac ctcggcaaga
     2341 tcgtggaact cgcccccgct aaagacattt acgcacagcc gctgatgccc tacacgaaag
     2401 ccctgatttc cgcggtgccg gttcccgatc cgaagataga actcacccgc cgccggatcg
     2461 ttttggaagg cgacgttcct tctccgatca atccgccgcg cggctgccgc tttcacacac
     2521 gctgccccta cgccatcgac gcctgtcgtg acatcgagcc gcagctcgtt gaaatcaaac
     2581 cgaatcattt ggccgcctgc atacgaatta gccctgaaca gccggacatc gagcgggtcg
     2641 cgccgggtga cgcgccgggc ttgaggaagc agtccgccgg cgcgatggcg tgaaaacctc
     2701 agcctattag tcgtttacgc tacaggtgag atgaattcac ggggctgttt gctatagctc
     2761 caggagctgg aaatccgcca gcggatacgc ttgtgagcgc gtatggcgcg acctatactg
     2821 aaacgcccgt cgagcgaagt gtccaacgtg aaaaagccga taaccgacaa gagcacggcg
     2881 cgatcgtccc cgcttgaaca gaaagttcca gagcgggcgc caaaaggctg ggccgaggtg
     2941 caggaatcca ttgcgaattc gtcaggaatc tctttgcttt tggttgaggg ccatcaaccg
     3001 ccggccctgg ccatcgcgaa caacaactcg atttgtgaag cgctacaatc gtctcccgaa
     3061 catgtcaagc tctgcgaccc ctactgcggc gcggcccata accgcgcaac gagcgcgaac
     3121 acgatcacgc actatcgctg tcacgcaggc ttgcaatgct ttgccatgcc ggtccagatc
     3181 agcagtgagc gacaacttgc agtgattgga ggccgcgcgt ttgtcagcgg cgcggattac
     3241 cgcgcgctgg cagagcgctt tcgctcaggc gatcttcagg agcttgtctc cgacacactc
     3301 tttcgcaacg tgattttcgc cgacgaagcc gatcttgacc atgccgcatt gcgtgtcgcc
     3361 agagccgctc gtgagtttca agaacaaccg tcatcggaag ttagcgagtc ggagaatacg
     3421 ccgggcacga acgctgacgc caatctttcc gcgctaaccg aagatcgacg cacagacgcc
     3481 gggttgcgac gcggcctaga tcgccgggcc ccgttcgccg attcaattcg caggttcgcc
     3541 gagcagatcg acgcgagtga gccggcgcag acctacgact caatcctcgc gcaatcggcg
     3601 gacttagtga cggccgagcg ggcctctttg cttctgtttg atgaaggcgc aaacgagttg
     3661 acgatgaagg cggcactcgg acttccagaa ccagtgagcg ccgtcggtcg aattcatttg
     3721 ggcgagggaa tcgctggaac cgtcatgcgc gaagggcgtc cgatcgtggg cgcaatcgat
     3781 cagttcggga agccggcgtc gcctgcgcgc cgctacaaaa cgaaatcgtt tatcagctat
     3841 ccaatcgcga tcggcaatcg gaaaatcggc gtgttgaatc tcgcggacaa agtgggcgga
     3901 ggcgcctacg acgcagcgga cttgaacgtg atcgaactcg tggggccgca gatcgcgctc
     3961 gcgctcgaac gcgccgcatg gcagcaacgc gcgaatcaat ttcagttgat gtcgatcacc
     4021 gatccgctga cgggcttgca caacaggcgc tatcaggagg cgcgcctggc ggaagaattg
     4081 agtcgttcga agcgctacaa ttatccgctg agcttcatga tgatcgacat tgatgatttc
     4141 aaggtttata acgatcgcaa cggacatcag ggcggggatc gtgcgctgga aattacggcg
     4201 caatgcctga gggcggcgct gcgcaaagtt gacgtggcct cgcgttacgg cggcgaggag
     4261 ttcgcgatct tgcttccgca aacgactctg caggaagcag gcgtcatcgc cgaccgcgtc
     4321 cggcgcaaaa tcatgagcac gccgtatccc catgggaagt cacaaccgct gggcgcgctg
     4381 actgtgagca tcggtttatc ggcgttctcg ccgacgctcg attcggcgga agcaatcgtg
     4441 cgcgctgcgg atcgggccct ttaccatgcg aagagccgcg gcaagaatcg ggcctatgct
     4501 tatcagggag cgccggctcg caccgatcaa agagcggcga gtcagcaact gtgatcgatg
     4561 acccaccagc gcatacttgc cagtgtcagc cgagaagaat tcgtgggccg cgacgcggag
     4621 ctgcagcaga tcgtgcgtca agcgtcatgg tttcgggacc ggcgcggact cttgttgctc
     4681 gctgctccgg gcgttggcgc cgcggaactg ctccgtcagg cttacgatca gttattcagt
     4741 cgtcgcggtg atccgatccc aatccacttt tccttcggac cgagcgacgg cctgctcgac
     4801 gcagctcgca gcttctttca aaacttcatt cagcaataca tagcttatcg ccgcgtcgat
     4861 ccttcgctct gcgacgcatc attgacgttt catgatctgg ttgagctggc cctgcccggc
     4921 gactacgaat taatcgccac gctgctcgaa agttttgaac gcgagcgcct cgcagcgaac
     4981 gagcgcgcct tcctgcgttt ctgtctgagc gctccgcaaa ggctatcagc aaaaggccga
     5041 aacattttcc ctttaattga ttccacgcgg ctcgccaagc ccggcaaagg cgaggcactg
     5101 ctggcacagg agatcgccgg ggcctttgct cggtcgggcg gaccctttgt gctgtcggga
     5161 ttacgccggc agttactcga tttggttcac cgcgccggcg acggacgtgg agcggatgaa
     5221 attgttcact tggagaaact gagtgacgac gacgcgcgca atctcatcga aagtgcagtc
     5281 cgccggcacg aagtagagag caacgagccg acgcgtgatt taatcgtgca gcaactcaat
     5341 gcgagccctt tcttcatcaa cgcactgatt caagcagctc gcgaaaccaa aacgccgctg
     5401 acaagctttc ttaactgcca gcgcctttac gttgacgagt taatgggcgg acgcatcaac
     5461 cggcatttct caaacatcct cgactacgtc gcgccacatc cgcagacgcg aaagaccctg
     5521 ctgcgcgtga tgtatgaatc cgcatccacg gaagcgcgca agtcttcgct gtgggcgtgg
     5581 aaaaaacgac tgggcgttga tgcgggcgag ttcgaacgca tcattgacac gcttcatgtt
     5641 aacgaactgg cgaattcgag cgcttcctcc atcgaggtca atgccgattc gtacgtctgg
     5701 atggattatc tgcgcgcgca ctatcgagtc gaagtggggg acgagccgcg cgcgctaatt
     5761 gtcgccacta cgctgctgga gacgctcaag cgggcgccgc aggccatggc gcgcaagtac
     5821 cggcgcgagg cagcgctcgg attgctcgat ctgctgccgt ccttcaactg ccagcgcgtg
     5881 ccggcaagct tgtttcacta tgatcgattc gccgctgctc acaaaggcgt ggacattgaa
     5941 tcagttaacg cggcgctcga cgttgagtct gacttgatca gactaccaca gatcgttcac
     6001 gcgacaagtc tcgccgcgtt tgcatcgtcg atgcagttcg acgcagagcg tggcgtcgtc
     6061 gcacatggct ttgaagcggc ggactacacc gacgaaaacg aggttgtctg gttggccgcg
     6121 gaaattgact ccaaactcga agccagccgc gaagttacc
//
LOCUS       DASZZE010000199         6297 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_202620, whole genome shotgun sequence.
ACCESSION   DASZZE010000199 DASZZE010000000
VERSION     DASZZE010000199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6297)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6297)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6297
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_202620"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2540
                     /locus_tag="VHD88_03905"
     CDS             <1..2540
                     /locus_tag="VHD88_03905"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HVS20963.1"
                     /translation="QHPGLLVSRGRCVEQYGTGEAYLPFLDAVGALLGGPGRERIAAV
                     MRTYAPTWCLQLPAAFVSTGSLDALQRETIGATKERMLREMGDALGALAASTPLVLLL
                     EDIHWADPSSVDLLRHLCQRIGAQRLLVIGTYRPEDVERSGHPLKTYKPEMQAHNLCE
                     EISLGLLSHEHISSYLNVRFAPNDFPLELPALIQRKTEGHPLFATSLVQFLSERGDIA
                     KANEHWTLTRPLLEMDLEAPETVRSMIRKKIEALEEDDRRALQYASIEGEEFTSTVLA
                     KLLGWDELDLEERLDRLDRVHRLIETRDEEELPDGSLATRYRFAHALYQNVLYGDLVS
                     KRRILLHRQAGEQLVQHYGKQAPRIAAQLAMHFERGRDFGRAVEYLIQAGDNASQLYA
                     NDEAEQHYSRALNLVEKVPVEAQAAKKLIIYKKRGGVNLALSRFDQAGDDFTRMRDEA
                     RALGESATESAALNALTLTLFYSHRLSEMAARAEEALEVAERAGSEALRIETMQLIGL
                     KHLCYGELAEATSMLDEVVRLARAIDHKPVLLSGLGWRGLLHFFQTEYEYAEGMLSEA
                     RKLASEIRDGFLLLESVFVLGLTRGNMGRISEALATLNEGIKMGQRNGDRFWYPRMPN
                     CIGWIHRELQDFDHAVEYDQHGLDVGREHHVLEAQANSLINLGIDYDHTGKSAQTLST
                     FHEAESIFERDAWFRWRYNIRLQAGTCEHWLAQGDLDQASEYAGRLLDVATHYQARKY
                     ITVAHKLFAEIAMARGDSSTAGAELNAALDQLREYPAPLVAWKTYAVLGRLRSQSGDL
                     PAAREAFAQAVAIVKSIATNTDDEGLRQTFLNSAAVKEVLDGAEKKA"
     gene            2595..3920
                     /locus_tag="VHD88_03910"
     CDS             2595..3920
                     /locus_tag="VHD88_03910"
                     /inference="COORDINATES: protein motif:HMM:NF012544.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HVS20964.1"
                     /translation="MTPQTSDEGLLRGIRKWDLIAVAINAVIGAGIFGLPSKVYSLIG
                     SYSLIAFVVCALVVLLIILCFAEVGSRFDETGGPYLYAREAFGSTVAFEVGWLIWLAR
                     LTAFAANCNLMVSYLSFFWPAANSPVPRAIVIALVVISLTALNVLGVRQAAIASDFFT
                     IGKLIPMLVFIATGLFFLNPHAFALGARPSTGAFSQSVLLLIYAFTGFEMAAIPAGEI
                     RDPQKHLPRALLMATGVVATVYILIQVVCVGTLPELATSQKPLADAAQRFMGTAGAAI
                     ISAGAIISITGNLNIVLLSGSRVPFAMAEQKQLPSFLASVHRRFFTPHVAIAITASVM
                     LALTLKTSFLAALTISAIARLVTYAVTCAALPVLRRRAGVRPAMFRLRGGTVIAIAAL
                     ILAAWLLANSTRTEAIQAVIAAGVGCLIYLAYRVVRYNLENGENSDEPT"
     gene            3907..4245
                     /locus_tag="VHD88_03915"
     CDS             3907..4245
                     /locus_tag="VHD88_03915"
                     /inference="COORDINATES: protein motif:HMM:NF016167.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF433 domain-containing protein"
                     /protein_id="HVS20965.1"
                     /translation="MNQPNYIEQRDNGYWIRGTRVSLDSVVYRFLEGLSPETIHADCF
                     PTLTLDQIYGAISYYLANRSEIDRYLQEADAEYAEFRQRIRAEYPEAHRRLDAILESR
                     QRARCSVGLS"
     gene            complement(4260..4628)
                     /locus_tag="VHD88_03920"
     CDS             complement(4260..4628)
                     /locus_tag="VHD88_03920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20966.1"
                     /translation="MKGRLASDHTPYVTVEVVEAGFGHEFVVDTGFNGSLYLPQDRIE
                     QWDLLFITSAPLVLANQSVVIADVFEATVVWFSATRRVPVVAGPSDCDSLLGMELLEG
                     CRIDLDSADRAVRIDHLSDH"
     gene            complement(4960..>6297)
                     /locus_tag="VHD88_03925"
     CDS             complement(4960..>6297)
                     /locus_tag="VHD88_03925"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HVS20967.1"
                     /translation="QEFAERIRSFADKLPPGRWITGGDWDHERWPDAKLPTKELIDRF
                     TPNTPVFVNRLDGHMALANSLALKLANVTRQTLDPPGGVIVRDPKTGEPTGVLKDAAQ
                     SFVWKVFPPPSFEEKLAAARAATNHAASVGVTSVQDMSAGADVGVYQALLDRGELKNR
                     IYAVWPLPRWMRLAQTGVRAHFGSAMLRTGGLKGFADGSLGSTTALFFETYKDAPDTS
                     GIGSDEMFPEGAMLERVRGADRAGLQVIIHAIGDRANDLILSIYEQVENENGDRDRRF
                     RIEHAQHLRAQDISRFARDRVIASMQPYHAIDDGRWAEKRIGHERAKTTYAFRSLLDS
                     GATLAFGTDWTVAPLDPLLTIYAAVTRRTLDGKHPNGWIPEQRISVEEAVRAYTVGSA
                     YAEFQEKEKGTITSGKLADLVILSRDIFKIDPKEIEKAKVVMTIMDGRVVYGN"
BASE COUNT         1310 a         1775 c         1832 g         1380 t
ORIGIN      
        1 agcagcaccc gggcctgctc gtcagtcgtg ggcgatgtgt cgagcagtat ggcactggcg
       61 aagcctattt gccgtttctt gacgctgttg gcgcgctgct cggcggtccc ggtcgcgagc
      121 gcatcgcggc cgtcatgcgg acctatgcgc cgacctggtg tttgcagctt ccggcggcct
      181 ttgtctcgac cgggtcactg gacgctttgc agcgcgagac aatcggcgcg accaaagagc
      241 gcatgctgcg tgaaatgggt gatgcgcttg gagcgcttgc ggcgagcacg ccattggttc
      301 tgctgcttga agacattcac tgggccgatc cctcgagcgt tgacctgctg cgtcatctct
      361 gccagcgcat tggcgcgcaa cgcttattgg taatcggaac atatcgacca gaagatgtcg
      421 aacgcagtgg tcatccgttg aaaacttaca aaccggaaat gcaggcgcat aatctgtgcg
      481 aagaaatttc gctcgggctc ctgagccatg aacatatctc cagttatctc aacgtgcgct
      541 tcgcgccgaa cgatttcccc ctcgagttac ccgcgctcat tcagcgcaag accgaaggcc
      601 acccgctatt tgcgaccagt ctcgtgcaat tccttagcga gcgtggtgac attgccaaag
      661 caaacgagca ctggacgctg acacgtccgc ttttggaaat ggacttggag gctcctgaga
      721 ccgttcgcag catgatccgg aagaagattg aggcgctaga agaagatgat cgacgggccc
      781 ttcaatacgc gagtatcgag ggcgaggagt tcacctccac cgtattggcc aaactgctgg
      841 gctgggacga gctcgacctg gaagaacggc ttgaccgcct ggatagggtt caccgtttga
      901 tcgagacgcg tgatgaagag gaattacccg acggctcatt agcaacgcgg tatcgctttg
      961 cccacgcgct ctatcaaaat gtcctttatg gagatttggt aagcaagcgc cggatattgc
     1021 tgcaccggca ggcaggggag cagttggtcc agcattatgg caagcaagcg ccacgcatcg
     1081 cggcgcagct tgcaatgcac ttcgagcggg gacgcgactt cgggcgcgcg gtcgaatacc
     1141 tcattcaagc aggtgacaat gccagccagc tctacgccaa cgacgaagct gagcagcatt
     1201 acagtcgcgc gctaaatctg gtcgaaaagg ttccagtcga ggcacaggcc gcaaagaaac
     1261 tgatcatcta taagaagcgc ggtggagtga acctggcatt gagccggttt gatcaggctg
     1321 gtgatgactt cacgcggatg cgcgatgagg ctcgtgccct gggcgaatcc gcgacggaat
     1381 cggcggcgct taacgcgctc actttgacgc ttttctactc gcaccgtctc agtgaaatgg
     1441 ccgcgcgcgc cgaagaagcc ctggaagtag ctgagcgagc gggaagcgaa gctctgcgga
     1501 ttgagaccat gcagctcatt gggctgaagc atctttgcta cggggagttg gctgaagcga
     1561 cgtcaatgct ggacgaggtt gtccggctcg cgagagctat tgaccacaag ccggtgctgc
     1621 tcagcggcct gggctggcgt gggttgctgc acttctttca gaccgaatac gaatatgccg
     1681 aagggatgtt gagcgaggcc cgcaaacttg cctctgaaat acgcgacggg tttttgttgc
     1741 ttgagtcggt tttcgttctg ggcctgactc gtggaaacat gggccgaata tccgaagcac
     1801 tcgcgactct caatgaagga atcaagatgg gccagcgcaa tggcgatcgg ttctggtatc
     1861 cgcgcatgcc gaactgcatt ggatggattc accgcgaact gcaagacttt gaccacgcgg
     1921 ttgaatacga tcagcatgga cttgacgtcg ggcgcgagca tcatgtcctc gaggctcagg
     1981 ccaactcgct gatcaacctg ggtattgatt acgatcacac aggcaagagc gcacagacgc
     2041 tttccacctt tcatgaggcg gaatcgatct tcgagcgcga cgcctggttt cgctggcgct
     2101 acaacatacg tctgcaggcg ggaacctgtg aacactggct cgctcagggg gatctcgatc
     2161 aggcaagtga gtacgccggc aggttgctcg acgttgccac acactatcag gcccgcaagt
     2221 acattactgt cgcacataag ctgttcgccg aaatcgcgat ggctcgcggt gattcatcca
     2281 cagccggggc ggaactcaac gccgccctcg atcaactgcg cgaatatcct gcgcccctgg
     2341 tggcgtggaa aacttatgca gtgcttggaa gactgcgctc gcagtcggga gatctaccag
     2401 ctgcccgcga ggcctttgcc caggcagtcg caatcgtgaa atcgattgcg accaatactg
     2461 acgatgaagg actgcgccaa acgtttctca attctgccgc cgtcaaggag gttctggatg
     2521 gagcggaaaa aaaagcgtga gacgcggtag cacaacgggc tgagtgatcc tgcacggcta
     2581 cgcaattcaa aacgttgaca cctcagacct cagatgaagg actgctgcgc ggcatacgca
     2641 agtgggacct tatcgccgtc gctattaacg cggtcatcgg cgctgggatt ttcgggttac
     2701 cgtcaaaagt ctactcgctc atcggctcgt acagcttgat cgcgtttgtc gtttgcgcgc
     2761 tggtggtgct gctgatcatt ctgtgcttcg ctgaagttgg cagtcgcttc gatgaaaccg
     2821 gcgggccata cttgtacgca cgcgaagcgt tcgggtccac agtagcgttc gaagttgggt
     2881 ggctgatctg gttggcgcgt ctgacggctt tcgccgccaa ctgcaacctg atggttagct
     2941 acttgagctt cttctggccg gcggccaaca gccctgttcc gcgcgcaatc gtaatcgctc
     3001 tggttgtgat ctcgctaact gcgctcaatg tgcttggtgt gcgacaagcg gcaatcgcca
     3061 gcgacttttt cacgatcggt aagctcattc ccatgctcgt cttcatagcg accgggcttt
     3121 tctttctcaa cccgcacgct ttcgctttgg gggcgcgtcc atcgacgggc gcgttttcac
     3181 aatcggtgct gctgctcatc tacgcgttca caggatttga gatggccgca attcccgccg
     3241 gagagatccg cgatccgcaa aagcatcttc cgcgcgcgtt gcttatggct acgggcgtcg
     3301 tcgcgactgt ttacattttg attcaggtag tgtgcgtcgg cacgctacct gagttggcaa
     3361 cgtcgcaaaa gccgctggcc gacgccgccc aaaggttcat gggaactgcg ggtgcggcga
     3421 ttatttcagc gggagcgatt atttcgatca caggcaactt gaacatcgtg ctgctttcag
     3481 gatcgcgcgt gccgtttgca atggccgagc aaaaacaatt gccttctttt ctcgccagcg
     3541 tccaccggcg attctttaca ccacacgtcg cgatcgcaat cactgcgtcg gttatgctgg
     3601 cgctgacgct gaagacttcg tttttggcgg cgctgacgat tagcgcgatc gcgcggctgg
     3661 ttacttacgc agttacgtgc gcggctttgc cggtgttgcg tcggcgagca ggcgtacggc
     3721 cggcaatgtt ccggctgcgt ggcggtacgg tgatagcgat tgcggctctg atactggctg
     3781 cgtggttgtt ggcgaacagc actcggaccg aggctattca agcggtgatc gcggctggag
     3841 tcggatgcct gatctatttg gcgtaccgcg tcgtgcggta taatctcgaa aacggggaga
     3901 acagtgatga accaacctaa ctacatcgaa cagcgagaca acggctactg gatccgcggc
     3961 acacgcgttt ccctcgattc ggttgtgtat cgcttcctcg aaggcctatc gcccgaaacc
     4021 attcacgccg actgcttccc gactctgacc ttagatcaga tttacggcgc aatctcgtat
     4081 taccttgcca atcgttctga aattgatcgc tatcttcagg aagctgatgc ggaatatgcg
     4141 gagtttcggc agcgaattcg ggctgaatat cccgaggcgc accgaagact ggatgcaatt
     4201 ctggaaagta ggcagagagc gcgctgctcg gttgggctct cgtaggtctc agcatgcttc
     4261 taatggtcag agaggtggtc aatgcggact gctctatccg ccgaatcaag gtcaatccga
     4321 caaccttcga gaagctccat tccgagcaga gagtcacaat ccgaaggacc ggcgacaacg
     4381 ggaacacgac gagtagcgga gaaccaaact accgtggcct caaacacgtc tgcgattact
     4441 acactctgat tggcgagaac tagtggagca ctggtaatga atagcaagtc ccactgctcg
     4501 attctgtctt gtggaagata aagagagcca ttaaagcccg tgtcgacaac aaactcgtga
     4561 ccgaagccag cttccacaac ctcaactgtg acgtaaggag tatgatcgga agccagccgt
     4621 cctttcacgg cagttcccct gtgacgcgcg gcgtgcgggc tcgaatcact gctcggtcgc
     4681 caatacggcg agtgtagacc tcgcctcggc ccgcgtttgg gtatttcttc cgcaaacgat
     4741 ctgaaacttc cactagcgag tcgccgacaa aatgatcgtg gctcgggaga tgaatcagaa
     4801 caagtcggcc ggtgtgggct ggctcaagca gcaattttag atgttgctcg tagatgcgct
     4861 cgcctgctcg agcggcctcc cctctcgcct ctatgacgtc tgcctgagcg ctcattaggg
     4921 caacattata caccgatctt tcagacacgg catcaggttt caatttccat aaaccacacg
     4981 accgtccatg atcgtcatca ctactttcgc tttctcgatc tctttcggat cgatcttgaa
     5041 aatgtctcgc gagagaatta ccagatccgc gagcttgccg gatgtgatgg ttcctttctc
     5101 tttctcctga aactctgcat aggccgagcc gacagtgtaa gcgcgcactg cttcctcaac
     5161 tgaaatcctc tgttctggaa tccagccgtt cggatgtttg ccgtcgagag ttcgtcgcgt
     5221 aacggcggcg taaatcgtga gcagcggatc gagcggcgct acggtccagt ccgtaccgaa
     5281 cgccagcgtt gcgcccgagt cgagcaagga gcgaaacgca taagtcgtct ttgcgcgttc
     5341 atgaccgatg cgcttttccg cccagcggcc gtcgtcaatc gcgtgataag gctgcattga
     5401 agcaatgacg cgatcgcgag cgaagcgcga aatgtcctga gcacgcaagt gctgcgcgtg
     5461 ttcgatgcga aagcgacgat cgcgatcgcc gttctcgttt tcaacctgct cgtaaatcga
     5521 aagaatgagg tcgttcgcgc gatcgccgat ggcgtgaatg atcacctgca agccggcgcg
     5581 atcggcgccg cgcacgcgtt ccagcattgc gccttcggga aacatctcgt cactgccaat
     5641 accgctggtg tcaggtgcgt ctttatacgt ttcgaagaag agcgccgtcg tcgatcccaa
     5701 actgccgtca gcgaatcctt tcaagccgcc ggtgcgcagc atcgcactgc caaagtgcgc
     5761 gcgcacgccg gtttgcgcca gacgcatcca acgtggcagc ggccacaccg catagatgcg
     5821 attcttcaat tcaccacgat cgagcagcgc ttgatacacg ccgacatcag cgcccgcgga
     5881 catgtcctgg acgctggtca caccgacgct tgccgcgtga ttcgtggcgg cgcgcgcggc
     5941 ggcgagtttt tcttcgaagc ttggcggcgg gaaaaccttc cagacgaaac tctgcgccgc
     6001 gtctttcagg actccggtgg gctcgccggt cttcggatcg cggacgatga cgccgccggg
     6061 cgggtcgagc gtttgccgcg tcacgtttgc gagtttgagc gccaggctat ttgccagagc
     6121 catgtgaccg tccagccgat taacaaaaac gggcgtgttc ggcgtgaacc gatcgatcaa
     6181 ctctttcgtc ggcaactttg catccggcca gcgttcgtga tcccaatcac cgccggtgat
     6241 ccagcgaccg ggcggcagct tatcggcgaa gctgcgaatt cgttcggcga attcctg
//
LOCUS       DASZZE010000200         4304 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_186761, whole genome shotgun sequence.
ACCESSION   DASZZE010000200 DASZZE010000000
VERSION     DASZZE010000200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4304)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4304)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4304
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_186761"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..929
                     /gene="ftsZ"
                     /locus_tag="VHD88_03930"
     CDS             <1..929
                     /gene="ftsZ"
                     /locus_tag="VHD88_03930"
                     /inference="COORDINATES: protein motif:HMM:TIGR00065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HVS20968.1"
                     /translation="RLTKGLGAGSDPEVGRQAALEDTDKIIEVLEGADMVFVTTGLGG
                     GTGTGGAPIVASLATELGALTVAVVTKPFLFEGRRRLQQAEQGLSELHESVDTVITIP
                     NERLFGAVPQGASFADAFKAADDVLRQAVQGISDLITVPGLINLDFADVRTIMQGMGM
                     ALMGTGYARGENRAVEATQEAISSPLLEEASIKGARGVLINITGGHDLTLFEVNEAAT
                     IVRQEADDDANIIFGHVIDESMADAMKITVIATGFRHAAATASAAAGATMPVTTPPRF
                     APRTPDDFPSPQQSPRRNEDLDVPTFIRKKAD"
     gene            1209..1640
                     /locus_tag="VHD88_03935"
     CDS             1209..1640
                     /locus_tag="VHD88_03935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20969.1"
                     /translation="MSNRKLIRTTLADVKARREEGQQRDRMNGHDQRPVGMPQQRPPQ
                     HSSSIQVRKRQPPPMETHAEIYYYKKQIDAHTPMVLVLQDGEEIEGTIEWYDRGALKI
                     NRRSAPNLLVLKRNIKYMYKVEDRVPQPTRVEDDVTHTAES"
     gene            1786..2781
                     /gene="pdxA"
                     /locus_tag="VHD88_03940"
     CDS             1786..2781
                     /gene="pdxA"
                     /locus_tag="VHD88_03940"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: protein motif:HMM:TIGR00557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050570 - 4-hydroxythreonine-4-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HVS20970.1"
                     /translation="MGDPAGIGPEVVLKAVAEDEVRNVCVPVIIGDAQLLAHNARTLD
                     LQCGYEIVRQGEHLPDQIDDPIIFHLDNISGHVEPGIESGAAGKAAAGYIEAAVELCA
                     AGSIDAIATAPINKRALFLGGYSFPGHTEFLAHLTGAEDYAMGFVAANLRVVLLSTHV
                     PLSEAIRLVTRERVEKTIRLTDRELRRWGIERPRIALAALNPHGAEGGLFGIEEASEM
                     LPAVEACRAIDDINVRGPFSADTIFLRASRGEFDAVVACYHDQAMIPVKCLSFGEAVN
                     VTLGLPFIRTSVDHGTAFDIAGKGIAEHSSMVEAIKLAAELSLKAGESGRVVEAA"
     gene            2815..3219
                     /locus_tag="VHD88_03945"
     CDS             2815..3219
                     /locus_tag="VHD88_03945"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HVS20971.1"
                     /translation="MTPTDRTSKGRVLVADDDPAILRLVSTIVEKEGFSVVVARDGRE
                     AYKALQNDAGFTAAVFDVVMPHIAGPELVRYMRTEKRFMRIPVMMMTAEQDPKLSSDS
                     FAAGAVVFLPKPFTTVQLQTMLRMLVSKAKTT"
     gene            3293..3889
                     /locus_tag="VHD88_03950"
     CDS             3293..3889
                     /locus_tag="VHD88_03950"
                     /inference="COORDINATES: protein motif:HMM:NF019934.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspG"
                     /protein_id="HVS20972.1"
                     /translation="MLKPRNLIISFLILITTGAGFIANRVRAAGDLTPREARRLIARM
                     AGIELPSDAVRVKEVSSLGNTATVVAQVETAFRFVKGDNDKWRVAEIRTGDRRWEDVD
                     MLVKALNVEKTERARAELESIATALESYRREHGFYVEAKSEARLVDRLNPRYLARIIR
                     VDPWHQPYEYEGTRNGFVLRSVGPDGKPNTSDDVIVTR"
     gene            4089..>4304
                     /locus_tag="VHD88_03955"
     CDS             4089..>4304
                     /locus_tag="VHD88_03955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20973.1"
                     /translation="MNPYLQNLFEIHSSGSAVKETSGYGTLGNLFNEVGKTLKPRVRC
                     IINIKNKGAGIPDGGLFTPDQFQKRAKG"
BASE COUNT          961 a         1152 c         1280 g          911 t
ORIGIN      
        1 gcagattgac gaaaggactc ggcgccggat cagatccgga agtcgggagg caggcggcgc
       61 tcgaagacac agacaagatc atcgaagtgc tcgaaggcgc ggacatggtg tttgtcacga
      121 ccggactcgg cggcggcaca ggcaccggcg gcgcgccaat cgtggcctcg ctggcgacag
      181 aattgggcgc gctaacggtg gcagttgtca ctaagccttt cctatttgaa gggcgacgca
      241 gattgcagca ggccgagcag ggcttgagcg aactgcacga atctgttgac accgtcatta
      301 cgattccgaa cgaacggctt tttggcgcgg tgccgcaagg cgcttcgttt gccgatgctt
      361 ttaaggccgc tgatgatgtg ctgcgccagg cggtgcaggg catcagcgac ttgatcactg
      421 ttcccggctt gatcaatctc gattttgccg acgtgcgcac gatcatgcag ggcatgggaa
      481 tggcgctgat gggcactggt tacgcgcgcg gcgaaaaccg ggccgtagaa gccacacagg
      541 aagcaatctc gtctccattg cttgaggaag cgtcgatcaa gggcgcgcgg ggcgtgctca
      601 ttaacattac cggcggccac gacttgacgc tctttgaagt taatgaagca gcgacaatcg
      661 ttcgtcagga agcggacgat gacgcgaaca ttattttcgg gcacgtaatc gacgaatcaa
      721 tggcagatgc gatgaagatc acggttatcg ccaccggatt tcgtcacgca gcggcgacag
      781 cttcggcagc agcaggcgcg accatgccgg taactactcc gccgcgattt gcgccacgaa
      841 cgccggatga ttttccgtcg ccgcaacaga gcccgagacg caatgaggat ctcgatgtgc
      901 cgacttttat caggaagaaa gcggactagg aatcagtaag ccattgaata gtcaatgagc
      961 aggaagcttg ctcttgcgtt ccgcgcgctg taaccaaaac tcctcttcaa gctttgcgtt
     1021 ttcccctttg gtcgtgtagt atgtcgcgca ttccctgaac gatatttccg aacgggtcat
     1081 tgcgcatctc tcctcggaag gctgcagctt gcgataggca agtttgggtc tgccacgcaa
     1141 tcaaaggacg ggacgcattt gggagcgtca acgacgttcc tctctgaatt cttttggagg
     1201 caattgtaat gtctaatcgc aaacttatca gaactacgct cgcggacgta aaggccagac
     1261 gcgaagaagg gcaacagcgc gaccggatga acggccacga ccaacgcccc gtaggcatgc
     1321 cccagcagcg accgccacag cactcgagct cgatccaggt gcgtaagcgt cagccgccgc
     1381 cgatggagac tcacgccgaa atttattatt acaagaagca gatcgacgcc cacacgccga
     1441 tggttcttgt tctgcaagac ggcgaagaga tcgaagggac gattgaatgg tacgaccgcg
     1501 gagcgttgaa gattaatcgg aggtcggctc cgaatctttt ggttttgaag cgcaacatca
     1561 aatacatgta taaggttgag gatcgcgtgc cacaaccgac ccgcgttgaa gatgatgtga
     1621 cccacaccgc agagtcttaa tcaacttcgt ttcgcaggcg attctttccc gttagacggc
     1681 agggtccctg ttgcctcaca ggatcttctt tgatggatga gtagtttccc gcaagacttc
     1741 tctaatgcga ctgttcggcg gtcgagaccg cgcgttggta tcaccatggg ggatccggca
     1801 ggaatcggtc ccgaagttgt cctcaaagcc gtcgcagaag atgaagtacg caacgtttgt
     1861 gttcccgtaa tcatcggcga tgcgcagttg ctggctcata acgcgcgcac gctggatctg
     1921 caatgcggct acgaaatcgt tcgccagggt gagcaccttc ccgatcagat cgatgatccg
     1981 ataatttttc atctcgacaa catcagcgga cacgttgagc cgggaatcga atccggcgcc
     2041 gcgggaaaag cagccgccgg gtacatcgaa gccgccgtgg aattgtgtgc cgcaggcagc
     2101 atcgacgcga ttgcgacggc gccaatcaac aagcgcgctc tctttctcgg aggttacagc
     2161 ttccccggcc acacggagtt tttagctcac ttgaccggcg cagaagatta cgcgatgggg
     2221 tttgtggccg ccaatctgcg cgtcgttttg ttatcgaccc atgttcctct ctcggaagcg
     2281 attcgcctcg tcacgcgcga gcgcgtcgag aaaacgattc gcctgaccga tcgcgaactg
     2341 cgacgttggg gcatcgagcg gccgcgcatt gccttggctg cgctgaatcc gcacggagca
     2401 gaaggcggct tgtttgggat cgaagaggcg tccgagatgc ttcccgcggt cgaagcatgt
     2461 cgcgcgattg acgacatcaa tgttcgcggc ccgttctcag ccgacacgat tttcctgcgc
     2521 gcttcgcgcg gagagtttga cgccgtggtt gcgtgttatc atgatcaggc gatgatcccg
     2581 gtgaaatgcc tttcgttcgg cgaggccgtc aatgtcactt tgggcttgcc atttattcgc
     2641 acgtcggtcg atcatggaac ggcattcgac atcgccggaa aaggaatcgc cgagcactcg
     2701 agcatggttg aggcaatcaa gctggccgcg gagctttcgc tgaaggccgg cgaaagcggg
     2761 agagttgtcg aagcagcgtg agcctgcggg ctgatataag gaacaagacg aaagttgact
     2821 ccgactgaca gaacctcgaa aggacgcgta ctggttgctg atgacgaccc ggcgatcctg
     2881 cgtctggtga gcacgattgt ggagaaggaa ggcttttcag tcgtcgtcgc gcgcgatgga
     2941 cgcgaggctt acaaggcgct tcagaacgat gccggtttca ccgccgcggt gttcgacgtc
     3001 gtaatgccgc acattgcggg gccggaactg gttcgctata tgagaactga gaagcggttc
     3061 atgcgaatcc cggtaatgat gatgactgcc gagcaggatc caaaactttc ctcggacagt
     3121 ttcgcggccg gtgccgtcgt gttcctgccc aagcccttca ccaccgtaca gcttcagaca
     3181 atgctgcgaa tgctggttag caaggccaag actacgtagc ttattcgcgc gtctctctgt
     3241 tgtcatcgcg atttggcaac cgagcgaacc gcaatgttca ggagattgaa tcatgcttaa
     3301 gccccgcaat ctcataatct cttttttgat cttgattaca accggcgccg gcttcattgc
     3361 caatcgcgtg cgggcggcgg gagatcttac gcccagagaa gcgcgccgat tgattgcacg
     3421 catggccggc atcgagttgc cgtcagacgc ggtgcgcgtc aaggaagtct cgtctctcgg
     3481 caacaccgca actgtggtgg cgcaggtcga aacggcgttt cgatttgtca aaggcgacaa
     3541 cgacaagtgg cgtgtggctg agattcgaac gggcgaccgg cgctgggaag acgttgacat
     3601 gctcgtcaaa gccctgaatg ttgaaaagac ggagcgcgcg cgtgccgagt tggaatcgat
     3661 tgccacggcg cttgagtcgt atcgccgcga gcacggtttt tacgtcgagg caaagagcga
     3721 agcaaggctc gtcgatcgtc tgaacccgcg ttacctcgcc cgaataattc gcgtcgatcc
     3781 ctggcatcag ccctacgagt atgaaggcac gcgaaatgga tttgtgctcc gcagtgtggg
     3841 tccggacggc aagccaaaca cgagcgatga tgtgatcgtc acgcgttgag tgggttcagc
     3901 gaggagcctc atcgccagga gtcacctaat caaccgacac gacggggcag aagcccgcgc
     3961 gtaaggaagg gcgtcgagtt accaattggt actcaagcat gggcaggttc gacctgccta
     4021 tatgttttgg aagcgtgtat catggatttg ctagctactt gtcgcggttg ggagttggac
     4081 ctcattcgat gaatccctac ctgcagaatc tatttgagat tcatagctcc ggctcggcag
     4141 tcaaagaaac ttctggatac ggaacacttg ggaatctttt caacgaagta ggcaagacac
     4201 tcaagccgag agttcgctgc atcatcaaca tcaagaacaa gggtgctggt attcctgacg
     4261 gcggactgtt tactcccgat cagtttcaaa agcgcgccaa aggc
//
LOCUS       DASZZE010000201         2132 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_266873, whole genome shotgun sequence.
ACCESSION   DASZZE010000201 DASZZE010000000
VERSION     DASZZE010000201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2132)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2132)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2132
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_266873"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2132)
                     /locus_tag="VHD88_03960"
     CDS             complement(<1..>2132)
                     /locus_tag="VHD88_03960"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HVS20974.1"
                     /translation="RRRVSTLVSVGTKLGRYEIHSQLGAGGMGEVYLAQDTKLDRKVA
                     LKVLPGDIASDKERLLRFEREAHAVSALNHPNIITIHEIGESDGVHFIATEFIDGTTL
                     GDRLASRSLTLSEMLAVAAQIARAIQAAHEAGIVHRDIKPGNVMLRRDGYVKVLDFGI
                     AKLTEHTSGAIDSEAATIARMVNTEPGKIMGTTHYMAPEQVRNQTIDARTDIWSLGVL
                     LYEMIAGRKPFLGETFGDLIAAILTNEPPALSELAPECPAELERIVVKALQKDRKQRY
                     QHAKDLSSDLKGLRRRLAFEAELERSATVDHSDALTAPKTVTGATLSTGPVGAATDGI
                     GATGQIAAADLHTTSSAEYLVNEFRKHKRSVFLALIPLVVAAAALVYFAAFRPQPATL
                     TDKDTILLADIENTTGDPVFDGALKQGLAVTLGQSPFLDIFPEARVRETLQLMQRGPD
                     ERVSEAIAREICLRQGLKAFLSGSIATLGSHYVIMLKAVNAQSGDEIARDQTEADSKE
                     RVLTALSQVAIKLRQQLGESLSSIQKFDAPIEQATTASLDALKAYSLGLEQANSGNYP
                     KAIPFYQRAIELDPNFALGYQALAREQLNNDDNNAATVSASKAFELRERASENEKLYI
                     TLIYHRAVTNDLEKAIEGGEIWKHTYPRYWRPYHALADLYLEVGEFEKAAENGRDAVR
                     LNPKIAAAYSNYAGALVYLNRFDEAKQI"
BASE COUNT          406 a          613 c          604 g          509 t
ORIGIN      
        1 tagatctgct ttgcctcgtc aaagcgattg agatacacca gcgcgcctgc gtagtttgaa
       61 taggcggcgg caatcttggg gttaaggcgc acggcatcgc gtccgttctc ggctgctttc
      121 tcgaactctc caacttccag ataaagatcg gcgagcgcgt ggtacggtcg ccagtaacgc
      181 gggtaagtat gcttccagat ctcgcccccc tcgatcgctt tctccaggtc attggtaacg
      241 gcccggtgat aaatcagggt gatgtatagc ttctcgtttt cgctggcccg ctcgcgcaac
      301 tcaaaggctt tgctcgccga gacagtcgcc gcattgttat cgtcgttatt cagttgttct
      361 cgcgccagag cctgataacc gagtgcgaaa ttcggatcga gttcgatcgc gcgctgataa
      421 aacggaattg cctttgggta attgccgctg ttggcttgct ctaagccgag cgaataagcc
      481 ttgagcgcgt ccagcgatgc ggtggtcgct tgttcgatcg gggcatcgaa cttctgaatc
      541 gaactcaagc tttcgcctaa ctgctggcgc aacttgattg cgacttgcga aagagccgtt
      601 aatacccgct ctttgctgtc ggcctcggtt tgatcgcgcg caatttcgtc gcccgactgc
      661 gcgttgaccg ctttgagcat gatcacgtaa tggctaccca gagtggcaat cgaacctgag
      721 agaaaagctt tcaatccctg gcgcaggcaa atctcacgcg ctatcgcttc gctcacgcgc
      781 tcgtctggcc cgcgctgcat caactgcaag gtctcgcgca cacgcgcttc cgggaaaatg
      841 tccagaaaag gcgactgccc aagggtgacg gccaagcctt gtttgagtgc tccgtcgaag
      901 accggatcgc ccgttgtatt ctcgatgtca gcgagcagaa tggtgtcttt gtcggtcagt
      961 gtcgctggct ggggtctgaa agccgcgaaa taaaccaggg ctgccgctgc tacgactaag
     1021 ggaatcagcg cgaggaatac gctgcgcttg tgtttcctga attcattgac gaggtactct
     1081 gcgcttgaag tcgtgtgaag atcggcggcc gcgatctggc ctgtcgctcc gatcccatca
     1141 gtcgccgccc cgaccggccc cgtgctcagc gtggcgccgg tgacagtctt cggcgcagtc
     1201 agcgcatcgc tgtggtcaac ggttgccgag cgctcgagtt ccgcctcgaa ggccagacgg
     1261 cgtctcaagc ccttcaagtc agaggagaga tctttggcat gttggtagcg ttgcttgcga
     1321 tctttttgta aggctttgac gacgatgcgc tcaagttcgg cgggacactc cggtgcgagt
     1381 tccgacaggg cgggcggctc gttcgtcaag atcgccgcga tcaaatcacc gaaggtctcg
     1441 cccaaaaacg gtttccggcc ggcgatcatt tcgtagagca gcacgcccaa actccaaatg
     1501 tcggtacgcg catctatcgt ctgattccgc acctgttccg gcgccatgta gtgggtggtg
     1561 cccattattt tgccgggctc ggtattgacc attctcgcga tggttgcggc ttcgctgtcg
     1621 atcgcaccgg acgtgtgttc ggttaacttg gcgatgccaa agtccagcac cttcacatag
     1681 ccatcgcgtc gcagcatgac gttgcccggc ttgatgtcgc gatgcacaat gccggcttcg
     1741 tgcgccgctt gtattgctct tgcgatctgc gccgcgaccg ccagcatttc gcttagtgtc
     1801 aacgaacgac ttgcgagccg atcaccaagg gttgtgccgt caataaactc cgtcgcgata
     1861 aagtgcacgc catcgctctc gccaatttcg tgaatcgtga tgatgttcgg atgattgagc
     1921 gcggaaactg catgtgcctc acgttcaaaa cggagcaggc gttccttatc tgaggcgata
     1981 tctccgggca aaactttcaa cgcaactttg cggtcgagct tggtgtcctg tgccagatac
     2041 acctcgccca ttccgcccgc accaagttgc gagtggattt catagcggcc gagttttgtg
     2101 ccaacggaaa ccagtgtgct tactcgccgc ct
//
LOCUS       DASZZE010000202         8321 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_186878, whole genome shotgun sequence.
ACCESSION   DASZZE010000202 DASZZE010000000
VERSION     DASZZE010000202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8321)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8321)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8321
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_186878"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..4081
                     /locus_tag="VHD88_03965"
     CDS             <1..4081
                     /locus_tag="VHD88_03965"
                     /inference="COORDINATES: protein motif:HMM:NF019323.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004866 - endopeptidase inhibitor activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-2-macroglobulin family protein"
                     /protein_id="HVS20975.1"
                     /translation="NAAANVAYVLKDSRGNEVTKGNLAVNALGGFDFALKLPPTMNLG
                     YANIALKAEGGTGEATGRDFGHNFRVEEFRRPEFEVSAKTESEAPLFVGDRANASVTA
                     NYYAGGGLANAEVTWRVTSTPGTFTPPNRGDFTFGKWIPWWRENNERGESHTETLSGR
                     TDASGKHRLRIDFDSVNPPRPSSVTAQASVQDVNRQTWSSTATMLVHPANLYVGLKSD
                     KTFVQQGEPLIVQSIVTDLDGKAIANREVKMRAVLLDWKQVKGEWKQVEVNPQDCSVQ
                     SAADAVKCTFTSKEGGTYRVTATIRDDRGRANESELTLWVAGGKRPPKTGVEEEKVEL
                     IPDRKEYKAGDTAQILVQAPFYPAEAVMSLRRSGIVRTERFRIDGPTYTLRVPIEEAW
                     TPNVHVQVDLVGAEDRDAGSADILSARASPARAPISAKSTIRAGALNADKMSALPAKR
                     PAYASGEINLSIPPLSRKLSVTAMPRDKTLEPGGDTFINVEAKDAGGKPVSGGEVAVV
                     VVDESVLALTNYKLDDPIATFYAQRSGDSTDYHSRKDVVLATLPGGGRGTTMGRGGAG
                     GAGTANFIAERSSAINGRAYDRLQVLADLSPPSPTPGSGGEAEQIRLRENFNALAVFA
                     PSVRTDANGRAQVQVKLPDNLTRYRVMAVAVAGGKQFGSGESAITARLPLMARPSAPR
                     FLNFGDRFELPIVLQNQTDQSMTVDVAVRASNAAFLSVPPAVAGGSMPNNDGPAMTRP
                     LPQAVLTGRRVTVPANDRVEVRIPASAVKAGTARFQIGAVSGRWSDAAEVELPVWTPA
                     TTEAFATYGEIDEGAINQPVKAPANVFPQFGGLAIETSSTQLQELTDAVIYLTSYPYE
                     CSEQLASRIITIAALRDVLTAFKAKDLPSPKDMEAAVTRDLKRLQGMQNEDGGFGFWQ
                     RGNESWPYVSIHVAHALARAKQKKFDVPKEMFDKSQKYLREIESHIPSYYGTDARRAI
                     IAYSLYVRAQMGDRDAARARKLIAEAGLEKLSLESVGWLLSVLSNDKDSTNEVAAIRH
                     LLNNRVTETAGTAHFVCSYSDSDYLVLNSDRRADGVILEALIGDQPNSDLIPKIVRGL
                     LAHRTRGRWGNTQENVFILLALDRYFNAYEKVTPNFVARAWLGERFAGEQQFRGRSTD
                     RQQVQVPMRYLASQSGAQNLILSKDGSGRLYYRIGMNYAPSDLNLKPADYGFTVERSY
                     EAVDDPKEVSRETDGTWHIKAGARVRVRLTMVATARRYHVALVDPLPAGFEALNPSLA
                     TTGSIPRDEKQTSVTEYGSRLYGYGWWWWRPEWFEHQNLRDERAEAFTSLLWEGVYKY
                     SYVARATTPGEFVVPPAKAEEMYHPETFGRGKTDRVRVE"
     gene            complement(4094..4465)
                     /locus_tag="VHD88_03970"
     CDS             complement(4094..4465)
                     /locus_tag="VHD88_03970"
                     /inference="COORDINATES: protein motif:HMM:NF012417.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HVS20976.1"
                     /translation="MHKINLAEKLSLIKDHWNPRIAGELNGQLLKLVKFQGPFTWHHH
                     DNEDEMFFVVKGRFRMDYREDGRDREEWIEAGEFIIVPRGVEHRPFAEEETEVLLFEP
                     ASTLNTGNVEDEFTRKELERI"
     gene            complement(4525..6561)
                     /locus_tag="VHD88_03975"
     CDS             complement(4525..6561)
                     /locus_tag="VHD88_03975"
                     /inference="COORDINATES: protein motif:HMM:NF014896.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HVS20977.1"
                     /translation="MLHPPATEKKPKVTEINGDKLVDNYFWLREKSNPAVIAHLEAEN
                     AYTAAVMKPTEALQGKLYNEILSHIKQTDENVPYRWGDYFYYTRTKEGLQYPIFCRKH
                     GKLDAAEEILLDLNELAKGQKFMSVGTFVPSDDGNLLAYSTDNTGYRQYTLQVKNLRT
                     GEFLPERIERVDSLAWATDNNTIFYVTEDAVTKRNDKMFRHVLGTDKNELIYEEKDEL
                     FDIGVGRSRDKAVILVEAASKTSTESRYIPANNPNAEWKVILPRQADHEYDVAHRGNL
                     FYIRTNKGAKNFRVVTAPVSDPSEKNWKEFVAHRPAVKIEGIDMFAGHAVLSEWENGL
                     QQLEVIDFKTNKRHRIEFPEPVYSAGPGPNHEFNTTVLRYNYQSLVTPSSVFDYDMNT
                     RKATLKKQTEVPGGFDKAIYKSERVFATASDGTKIPMSVVYRRNVKLDGSAPMLLYGY
                     GSYGISIAPTFSPARLALLDRGVVYVIAHIRGGGELGEPWRDAGRMMKKITTFTDFIA
                     CAEHLINQKYTSRDRLVIQGGSAGGMLMGAVTNMRPDLFKAVVAQVPFVDVLNTMLDA
                     SLPLTTSEYIEWGNPNEKPAYDYMKQYSPYDNVHKAKYPAILVKVSLNDSQVPYWEGT
                     KLVAKLRDYKTDHNPLLLKVNMGAGHGGASGRYDAYHETAFDFAFMLWQIGIMN"
     gene            complement(6817..7038)
                     /locus_tag="VHD88_03980"
     CDS             complement(6817..7038)
                     /locus_tag="VHD88_03980"
                     /inference="COORDINATES: protein motif:HMM:NF041212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Uxx-star family glutaredoxin-like
                     (seleno)protein"
                     /protein_id="HVS20978.1"
                     /translation="MVLVIYTKPGCPYCQQARDYYDSKGIAFTDYDAQNDRARRAEML
                     KFSGGDPTVPCIVENDKYVQSGWGDPLRG"
     gene            7816..>8321
                     /locus_tag="VHD88_03985"
     CDS             7816..>8321
                     /locus_tag="VHD88_03985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20979.1"
                     /translation="MKRCPTCRRTYTDETVKFCRVDGVTLVNDSAGLSESEATRVLPE
                     SRATGEAPTEVLRDTGEGKLTTSALKPGPPSAVIGAPRRSMSRRKLALIVALAVLVVV
                     GVAGYISYRHARDTEVAIDSIAVLPFENQSHDADSDYLSDGVTESIINNLTQLPNLKV
                     IARSSVFR"
BASE COUNT         1764 a         2311 c         2467 g         1779 t
ORIGIN      
        1 caatgcggcc gcgaatgtcg cttacgtgct caaagattcg cgcggcaacg aggtcacaaa
       61 aggcaatctc gccgttaacg cgctcggagg ttttgacttt gctttgaagc tgccgcccac
      121 gatgaatctc ggctacgcga acatcgcgtt gaaggccgaa ggcggaaccg gcgaagcaac
      181 gggccgcgac tttggtcaca attttcgcgt cgaagagttt cgccgccctg agtttgaagt
      241 gagcgccaag accgaaagcg aagcaccgtt attcgtcggc gatcgcgcga atgcgagtgt
      301 cacggcaaac tactacgccg gcggcggact ggcgaatgca gaggtgacat ggcgcgtgac
      361 ttcaacgccg ggaactttca cgccaccgaa ccgcggcgac ttcacttttg gaaagtggat
      421 tccgtggtgg agagaaaaca acgagcgcgg cgaaagccac acggagactc tgagtggccg
      481 caccgacgct tcgggcaaac atcgcctgcg gattgatttt gattcagtga atccgccacg
      541 gccctcgtcg gtgacggctc aagccagcgt tcaagatgta aatcgacaga cttggagttc
      601 tacggcgacg atgctcgtgc atcccgcgaa tctttacgtt ggcttgaaga gcgacaagac
      661 gttcgtgcag cagggcgaac cgctgatcgt gcaatcgatc gtcaccgatc tcgacggcaa
      721 ggcgatcgcc aatcgcgaag tgaagatgcg cgccgtgctg ctcgattgga agcaagtcaa
      781 aggcgaatgg aagcaggtcg aagtcaatcc gcaagactgt tccgtgcaat ccgccgcgga
      841 cgcggtgaag tgtacgttca cttcgaaaga aggcgggaca tatcgtgtga cggcgacgat
      901 tcgcgacgat cgcggtcgtg cgaacgagag cgagttgacg ctgtgggtgg cgggcggcaa
      961 gcgtccgccg aagactggcg tcgaagagga gaaagtcgaa ctgattcccg atcgcaagga
     1021 atacaaggcc ggagacacgg cacagattct ggtgcaagcg cctttctatc cggcggaagc
     1081 ggtgatgagc ttgcgtcgat caggcatcgt caggaccgag cgttttcgta tcgatggtcc
     1141 aacctacacg ctgcgcgtgc cgattgaaga ggcgtggacg ccaaacgtgc atgtgcaggt
     1201 tgatttggtc ggagccgagg atcgtgatgc tgggagcgca gacatcttgt ctgcccgcgc
     1261 gagcccagct cgcgccccta tttcggcgaa aagcacaatt cgcgctggcg cgctcaatgc
     1321 agacaagatg tctgcgctcc cggctaagcg gcctgcttat gcgagtggcg agatcaatct
     1381 ttcgattccg ccgctgtcgc gcaagctgag tgtaaccgca atgccgcgcg acaagacact
     1441 cgaacccggc ggtgacactt tcatcaacgt cgaggcgaaa gacgcgggtg gcaagccggt
     1501 gagtggcggc gaggttgccg tggttgtggt tgatgaatcg gtgctggcat tgacgaatta
     1561 caaactcgac gatcccattg caacctttta cgcgcagcga agcggcgact caactgacta
     1621 tcattctcgc aaagatgtag tgctcgcgac gcttccaggt gggggccgcg gcactacgat
     1681 gggccgtggc ggagctggcg gtgctggcac tgccaatttc atcgctgaaa ggtcaagtgc
     1741 aatcaatggg cgcgcctatg acagactgca agtcctagct gacttatctc ctccgtcacc
     1801 gacgcctggc tcaggaggag aagcggaaca gattcgtctt cgcgaaaact tcaacgcgct
     1861 cgcggtcttt gcaccttcgg tgcgaacgga cgcaaacgga cgcgcgcagg tgcaagtgaa
     1921 gctgcccgac aatctcacgc gctatcgcgt gatggcggtg gcggtggcgg gcggaaagca
     1981 atttggctcg ggtgagtcgg caatcacagc gcgcttgcct ttgatggccc gaccatccgc
     2041 gccgcgcttt ttgaactttg gcgatcgatt tgagttgccg atcgtgcttc agaatcagac
     2101 tgaccagtcg atgacggttg acgttgcggt gcgcgcgagc aatgccgcgt tcttgtcagt
     2161 accacctgcg gtagcgggtg ggtcgatgcc taacaatgat ggcccggcca tgacccgccc
     2221 gctaccgcag gcggtactga caggacggcg cgtcaccgtg cccgcgaacg atcgcgtcga
     2281 ggtgcgcatc ccggcgtcag cagtcaaagc cggcacggcg cgttttcaga ttggcgccgt
     2341 atctggccgc tggtccgatg ccgcggaggt cgagttgccg gtgtggactc cggcgactac
     2401 cgaagcgttt gcgacttacg gcgagatcga cgaaggcgcc atcaatcaac cagtcaaagc
     2461 gcccgcaaat gtctttccgc aattcggcgg actggcgatc gagacttcgt caactcaact
     2521 ccaggaactt accgacgcgg tgatctatct cacgagctat ccgtatgaat gctccgagca
     2581 gcttgcttcg cgcatcatca cgatcgccgc gctgcgcgac gtgctcaccg ctttcaaagc
     2641 gaaagacttg ccgtcgccaa aagatatgga agccgccgtc acgcgcgatt tgaaacgcct
     2701 gcagggcatg cagaacgaag acggcggctt tgggttctgg caacgcggca acgaatcgtg
     2761 gccctacgtg agcattcacg tggcacacgc gttggcgcgg gcgaagcaga agaagttcga
     2821 cgtgccgaag gagatgttcg acaagtcgca gaagtatctg cgcgagatcg agtcgcacat
     2881 tccttcttac tacggcacgg atgcgcggcg agcaatcatt gcctactcgc tctacgtgcg
     2941 cgcgcagatg ggcgaccgtg acgcggcgcg cgcgcgcaaa ctgattgcgg aagcgggact
     3001 cgaaaagctt tcacttgaat ccgtgggctg gcttctgtct gtgctttcga acgacaagga
     3061 ttcgacgaac gaagtcgccg cgattcgtca cttgctcaac aatcgcgtca cagaaacggc
     3121 gggcacggcg cacttcgtct gctcgtacag cgacagcgat tatctggtgc tgaattccga
     3181 tcgccgcgcg gatggcgtga tcctcgaagc gctcatcggc gatcagccga acagcgatct
     3241 gattccgaag attgtgcgcg gcttgctggc gcatcgcacg cgcgggcgct ggggaaacac
     3301 gcaggagaac gtcttcatcc tgctggcgct cgatcgctac ttcaatgctt acgaaaaggt
     3361 gacgccgaac tttgtcgcac gcgcctggct cggcgaacgc tttgcgggcg aacagcaatt
     3421 ccgcgggcgc tcgactgatc gccagcaagt tcaggtaccg atgcgttatc tcgccagtca
     3481 aagcggcgcg cagaacctaa tcctgagcaa agacggaagc ggtcgccttt actatcgcat
     3541 cggcatgaac tacgcaccga gcgatctgaa tctaaagccg gcggattacg ggttcacggt
     3601 cgagcgcagt tacgaagcgg ttgacgatcc gaaagaagtt tcgcgcgaga cggacggcac
     3661 ctggcatatc aaagccggcg cgcgggtgcg agtgcgcctg acgatggtgg ccacggcgcg
     3721 gcgctatcat gtcgcgctgg tcgatccttt gccggctgga ttcgaagcgc tgaatccttc
     3781 gctggcaacg actggcagca ttccgcgtga tgaaaagcaa accagcgtga cggagtacgg
     3841 cagccgctta tatggttacg gctggtggtg gtggcggcct gagtggtttg agcatcaaaa
     3901 cctgcgcgac gaacgcgcgg aggctttcac ttcgcttctg tgggaaggcg tgtacaaata
     3961 ttcttacgtg gcgcgcgcta cgacgccggg cgagttcgtc gtgccgccgg ctaaagcgga
     4021 agagatgtat catccggaaa cttttggaag agggaagacg gatcgggtgc gggtggaata
     4081 gcccgactcc aaattagatc cgctctaact ctttgcgggt gaactcatct tcgacgttgc
     4141 cggtgttcag ggtcgaagca ggttcgaaga gaagcacttc agtttcttct tcagcgaacg
     4201 ggcggtgttc gacgccgcgc gggacgatga tgaactcgcc tgcctcaatc cattcttccc
     4261 gatcgcggcc gtcttctcgg tagtccatgc ggaatcgacc tttcaccacg aagaacattt
     4321 cgtcttcgtt gtcgtgatga tgccacgtga acgggccctg gaacttcacc agcttgagaa
     4381 gctggccgtt gagttcaccg gcgatgcgtg ggttccagtg atctttgatc agcgaaagtt
     4441 tttcggcgag attgatcttg tgcatctctc ttgtgaaaaa cgccctctgc taaccctctc
     4501 ccacggggag aggggaaagg atcgctaatt catgattccg atctgccaca gcatgaacgc
     4561 gaagtcgaac gctgtttcgt ggtaagcgtc gtagcgtccg gacgcgccgc cgtgtcctgc
     4621 gcccatgttc actttcaaga gcagcgggtt gtgatcggtt ttgtagtcgc gcagtttcgc
     4681 gaccagcttc gtgccttccc aatacggaac ttggctgtca ttgagtgaaa ccttcaccag
     4741 tatcgccgga tacttcgctt tgtgaacgtt gtcgtacggc gaatactgtt tcatgtaatc
     4801 gtaagcgggc ttctcgttcg gattgcccca ttcgatgtac tcgctggttg tcaaaggcag
     4861 cgacgcgtcg agcattgtgt tcagcacatc gacgaacggc acctgcgcca cgaccgcctt
     4921 gaaaagatcg ggccgcatgt tcgtgaccgc acccatcaac atgccaccgg cgctgccgcc
     4981 ctggattacc aggcgatctc ttgaagtgta tttctgattg atcaagtgtt ccgcgcaggc
     5041 gatgaaatcc gtgaacgtgg tgatcttttt catcatgcgg ccggcgtcgc gccagggctc
     5101 acccagttcg ccgccgccgc ggatgtgcgc gatgacgtaa acgacgccgc gatctagcaa
     5161 agcaagacga gcgggtgaaa aagtcggcgc gatcgaaatg ccgtacgagc cataaccata
     5221 aagcagcatc ggcgccgatc catccagctt cacattgcga cgatagacga cggacatcgg
     5281 aatcttcgtg ccatcggaag ctgtcgcaaa gactcgttcg gatttgtaaa ttgctttgtc
     5341 gaatccgccc ggcacttcag tttgcttctt caacgtcgct ttgcgcgtgt tcatgtcgta
     5401 atcaaatacc gaactcggcg tgaccagcga ctgatagttg tagcgcagca ccgtcgtatt
     5461 gaattcatga ttgggaccgg gcccggcgga ataaaccggc tcgggaaatt cgatgcggtg
     5521 gcgcttgttg gttttgaagt cgatcacctc aagctgctgc aaaccgttct cccactcgga
     5581 cagcaccgcg tgaccggcaa acatatcgat gccttcgatt tttaccgcgg gccgatgggc
     5641 gacaaactct ttccagttct tttccgaagg atcggaaacg ggagcggtga cgacgcggaa
     5701 attcttcgcg cctttgttgg tccgaatgta gaaaagattg ccgcggtgag cgacgtcata
     5761 ctcgtgatcg gcctggcgcg gcagtatgac cttccactcc gcgttcggat tgttggcggg
     5821 gatgtatcga ctctcggtcg aagtcttgct ggccgcctca accagaatca cggccttgtc
     5881 cctggaacgg ccgacgccga tgtcaaacag ctcgtccttc tcttcataaa tcagttcgtt
     5941 cttgtccgtg ccgaggacgt gacgaaacat tttgtcgttg cgtttggtca cggcgtcctc
     6001 ggtcacatag aagattgtat tgttgtcggt ggcccaggcc aggctgtcaa cgcgctcgat
     6061 tctttcgggg aggaattcgc ccgtgcgcag attcttgacc tggagcgtgt actggcgata
     6121 gccagtgttg tcagttgagt aagccaacag attgccatcg tcgctcggaa caaacgtgcc
     6181 cacagacatg aacttttgtc ctttggccaa ctcgttcaga tcgagaagaa tctcctcagc
     6241 ggcgtcgagc tttccatgct tgcgacaaaa gatcgggtac tgcaagcctt ctttcgttcg
     6301 cgtgtaataa aaataatcgc cccagcgata cggaacgttc tcgtcagtct gttttatgtg
     6361 actgagaatt tcgttgtaga gcttcccttg cagcgcttcg gtgggtttca tcaccgcggc
     6421 ggtgtaagca ttctcggctt cgagatgcgc gatcaccgcg gggttggatt tctcgcgcag
     6481 ccagaaataa ttatcgacta gcttgtcgcc attaatctca gtaaccttcg gtttcttttc
     6541 ggttgcaggg gggtgcagca tcgtggatga atttccatct tgggccatga catcgactag
     6601 cgcaatcatt gcgattgaga gaaccaggaa cagaagagcg aagtgatgtt tcatgtaact
     6661 gtctcctcgt aagaaccaac ggggtttttg tttagaggcg gcctactgcc cgccaatcgt
     6721 gctctcattc agaccagggc gggcgctagc ccgcctctaa acggttgtaa caattggttg
     6781 cttttacgag cgcacggctc gtcagtcgtg caccgttcaa ccgcgtaaag gatcacccca
     6841 acccgactgt acgtacttgt cgttctcgac tatgcaaggc acggtcggat cgccgccgga
     6901 aaacttgagc atctcggcgc gccgcgcgcg atcgttctgc gcatcatagt cggtgaacgc
     6961 gatccctttt gaatcgtaat agtcgcgcgc ctgctgacaa tacggacatc cgggcttggt
     7021 gtaaataact aaaaccaatc gctcacctcc gtcggtgaag ttagtttagc agtttgttga
     7081 gtaagttgag aaacggggat ctggagttcg gcgcgccagg aaacgtaagt gggttttctc
     7141 cctctccctt tgggagaggg ccggggaggg ggcgtaagcg tggagacaag cagaagcgtt
     7201 ttcaactact gacgtgatcg cagaccctct cccaaacccc ctcccagagg gagagggctc
     7261 caaaaagaaa aagggacgag cgtgcctcaa cactcgtccc agcagcgtga ccagaatccg
     7321 gattcagccc ctccggttga aacttaagtc acgctgatcg cttgcggcga ctcgtcgccg
     7381 ctgttgcgcc ctccctcacg gtcgggcttc tgccactatc gccgccgcgc agcctacttt
     7441 ggtggctctt tcttgtcctc gcgatagtcg cgcacatcac atcgccggtc gcgccgatca
     7501 gtgctcgccg aattcagcgt ttactttcgc ggcgaaaccc cttgccaacc ccttagacgc
     7561 gaggccggcg cgagtggacg agattttttg cctggattga gaaagcaatt ctggcgtagg
     7621 cgcgggttct cggctaagat gctcagccaa ctcggacggc gacgcgtttc aatcccagga
     7681 tcagaggaaa ggcactcgtg aacatgaaga agtcttcgat agctggaaag atcgcctggc
     7741 tcgcattagt ttagaggcgg gttatcgccc gtcaaacgtg cgtactaaag cggcgacaag
     7801 gcgccgcaat ccaaaatgaa gcgttgtccc acatgccggc gcacttacac cgacgagacg
     7861 gtgaagttct gtcgggttga cggcgttacg ctcgtcaatg attccgcagg tctaagcgaa
     7921 tcggaagcaa ctcgcgtcct gcccgaatca cgcgccacgg gcgaagcgcc caccgaagtg
     7981 cttcgcgaca ccggcgaagg caagctgacc acatcggcgt tgaagcccgg accgccatcg
     8041 gcggtcatcg gtgcgccacg aagatccatg agccgacgca agctcgcgct gatcgttgct
     8101 ctcgcggtgc tagtcgtggt gggagtcgcc ggatacatca gctatcgcca cgcgcgtgac
     8161 acggaagtcg caatcgattc gattgcggtg ctgccgtttg aaaatcagag tcacgatgcc
     8221 gattcggact atctttcgga tggtgttact gaaagcataa tcaacaatct gacacagctt
     8281 cccaatctga aggtcatcgc gcggagctcg gtttttcgtt a
//
LOCUS       DASZZE010000203         4994 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_39101, whole genome shotgun sequence.
ACCESSION   DASZZE010000203 DASZZE010000000
VERSION     DASZZE010000203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4994)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4994)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4994
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39101"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1226)
                     /locus_tag="VHD88_03990"
     CDS             complement(<1..1226)
                     /locus_tag="VHD88_03990"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: protein motif:HMM:NF014200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004185 - serine-type carboxypeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HVS20980.1"
                     /translation="MRGDDALIVAGEQGFFSFQFLMEMRRRSSQALALFATSLFGAAV
                     VFTQQTSPSPASRSNPDGSTPAQIQPQAVAPPDVFAGTTQPVSASPQGLFQPAYLTPI
                     RGAQGVLAETLDGATLAAQSVDEKFNPASSIKLATALTVLQTFGPDHRFVTSVWATGK
                     IDPATGTLAGDLLVTGRDPSFHYEHAVMLARELNQIGIRIVRGNLIVAPGFTMNFDWS
                     AQHSGEQFRETADAARRSANATRAWIDERTLVGDNESLRSVPSVVVNGDVLIGSAPPE
                     AAPLLTHKSSNLVDILKVLLCYSNNFMAERIGETVGGPQAVRTFLVDKLKINPDEVML
                     SSTSGLGVNRVTPRAMMKILRGLRDELQKDKLSLSDILPVAGIDPGTLEDRYTDQAAR
                     GSVIAKTGTLGRTDGGA"
     gene            1438..2109
                     /locus_tag="VHD88_03995"
     CDS             1438..2109
                     /locus_tag="VHD88_03995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20981.1"
                     /translation="MTRRNPESVTVERLRDAHAQRRKEIRARLREFREVWRTGSDAQL
                     WEELVYCIFTAGASAKMGFNAVTAIRPLLKDGTREAMTRALTKRPAYRFFNVRPGYVV
                     ATRDYLRESFSMRLRRRLASFNDPFARRDWLAKDPRIKGLGYKEASHFLRNVGFKGYG
                     ILDKHIVRCLSELRVIDSPKPPTTRSGYLATEARMRQFSDSVGINFDELDLVLWSIKT
                     GEVLK"
     gene            2120..3760
                     /locus_tag="VHD88_04000"
     CDS             2120..3760
                     /locus_tag="VHD88_04000"
                     /inference="COORDINATES: protein motif:HMM:NF025034.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartyl protease family protein"
                     /protein_id="HVS20982.1"
                     /translation="MTLQRTTSVPLRAAIHSLAASLICLALAIAANAAPDNSKTRALA
                     QKALRSGDFERAEQLYRELLAKDDHDTDARLGLSHALQKERRFQDSFDHAARVLALDP
                     LSARAHALLGSAVLAAGDFRLSVEEFRTALSLKSDEAMAIAGLAMVDFYENRTSNCVA
                     GLRRAASIDPDEPDYIFNLGQAAARSERYKEAADAYERFLMIAPRTDADRRARIRGLI
                     DFLRYLGQQGSLYEVGGADHTVLDFEATDYRPVIKIRINGSKEVLRFVLDTGSGMSVI
                     SEETARKLGLKPVARGGLARAVGGGGRFEIVYAYLNSIDIGDIRVTNVPVYIRHFYDE
                     RNPVDGYLGIAALGRLVTAVDYGTRRLTFVRQRNSQADLATIVGREDKSANPATIEPR
                     PGIDLPVRTTSSGFLSGEVFIDGIKKPLNFIIDTGATVTVLSEKLAALEEAQPFMQQG
                     RMRVFGAAGIAENVKMALLPRLAIGTYSQDKIDAAVLDLEPVNETAGFEQSGILGGNF
                     LRHFRVAFDFQKGIVRLEPLGNATVHNENSPRPEDAQP"
     gene            3757..4245
                     /locus_tag="VHD88_04005"
     CDS             3757..4245
                     /locus_tag="VHD88_04005"
                     /inference="COORDINATES: protein motif:HMM:NF013970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HVS20983.1"
                     /translation="MKQSTYLETSVVGAYLDNGEPFRRDLTIRWWEHELSEYRAVISP
                     LVVSELERVAEPHRSAYLKLVSGLEQVELTDEAAILAEGYVSRGIFHRKYIADALHVA
                     VASFHKIDYLVTWNFGHLANVRRQARIRLFNTAAGFFVPMIVTPEFLVSEGAEKEAAT
                     GS"
     gene            4301..4528
                     /locus_tag="VHD88_04010"
     CDS             4301..4528
                     /locus_tag="VHD88_04010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20984.1"
                     /translation="MLYRRPKFLTVLLKIREAMSREADYDVDLFAEMVRSGARPVYGP
                     ERNIRGFKKRAPGNNEIELDAPIQQRRRTAR"
     gene            4585..>4994
                     /locus_tag="VHD88_04015"
     CDS             4585..>4994
                     /locus_tag="VHD88_04015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20985.1"
                     /translation="MDATFETIGLEVPSEKAINFLAERAENQGEPTQLLLRGAVLHGR
                     CWKLGEGLEVWSVLYESGTGDVFYANCRPGFRARYMQRITPWALTEYDEEGEAVVHGY
                     CDGGDTEVLFELQNLTEVGAGGFRAKALHVGLCGL"
BASE COUNT         1074 a         1348 c         1458 g         1114 t
ORIGIN      
        1 gcgccgccat cggtgcgccc gagcgttccc gtcttggcga tcacgcttcc acgagcggcc
       61 tgatcggtgt agcgatcctc gagcgtgccg ggatcgattc ccgcgaccgg cagaatgtct
      121 gagagtgaca gcttatcttt ctgcaactcg tcgcgcagcc cacgcagaat cttcatcatc
      181 gcgcgcggcg tgacgcgatt gacgcccaaa ccgctggtcg atgacagcat cacctcatca
      241 ggattgatct ttagtttgtc caccaggaac gtgcgcactg cttgcgggcc accgacggtt
      301 tcgccgatgc gttcggccat gaaattgttc gagtagcaaa gcaggacctt caaaatgtca
      361 acgagattgc tcgacttgtg agtgagcaac ggcgctgctt caggtggcgc tgacccgata
      421 agcacgtcgc cgtttaccac gacactcgga acgctgcgaa ggctttcgtt gtcaccgacc
      481 agcgtgcgct cgtcgatcca cgctcgcgta gcatttgctg aacgccgcgc tgcgtcggcg
      541 gtctcgcgga actgttcgcc ggaatgctgc gccgaccaat caaaattcat cgtgaaccca
      601 ggcgcgacaa tcaggttgcc cctaacaatg cggattccga tttgattcag ttcgcgcgcc
      661 agcatcacgg cgtgttcgta atgaaaggat ggatcgcgtc ctgtgactaa caagtcgccg
      721 gccagcgtgc ctgtggccgg atcgatcttg ccggtggccc agacggaggt cacgaatcgg
      781 tggtccggcc caaaagtctg cagcacagtc agcgcggtcg ctaacttgat cgaagatgcc
      841 ggattgaatt tctcgtcaac cgattgggcg gcaagcgtcg ctccgtccag cgtttccgcc
      901 aacacgccct gcgctccgcg gatgggcgta aggtatgcgg gctgaaacag tccttgggga
      961 cttgctgaaa ctggctgagt cgttccagcg aagacgtctg gaggagcgac agcttgcggc
     1021 tgaatctgcg ccggtgtgga tccatcagga ttcgagcgcg aggcagggct gggcgaagtt
     1081 tgctgcgtaa aaacaaccgc cgctccgaag agcgacgttg cgaataacgc aagtgcctga
     1141 ctggatcgcc gtctcatctc catcaaaaac tgaaagctga aaaacccttg ctcgccggcg
     1201 acgattaacg catcgtcacc cctcactttc gcttcgaatc atatcacgaa agccgtctct
     1261 ttttttggga gttcaagaag agccaacctt tgatgcgttt gcgtcgagac aagatgcact
     1321 cgtccacgcg tggtagctcg ctgttcgtgc taccaacttc gttgacagga aaacaagcgc
     1381 gcacctagaa tcacttagtt gcttgaatcg atctgaaatc ggaaacctca gatcaatatg
     1441 acgcgacgaa atcctgaatc ggtaacagtc gaacggctgc gtgacgcgca cgcgcagcgg
     1501 cgcaaagaaa ttcgcgcgcg actacgagag ttccgcgaag tttggcgaac gggttcggac
     1561 gcgcaacttt gggaagagct ggtctattgc atcttcactg ccggtgcgtc ggcgaagatg
     1621 ggtttcaatg cggtaacagc gatcagacct ttgctcaaag atggaacgcg tgaagcgatg
     1681 acgcgcgcgc tgacaaaacg acccgcttat cgctttttca acgtgagacc gggatacgtc
     1741 gtggcaacgc gagactattt gcgcgaatct ttctcaatgc gattgcgcag gcgactggcc
     1801 agctttaacg atccattcgc gcggcgcgat tggttagcga aggacccgcg catcaaagga
     1861 ctgggctaca aagaagcgag tcactttctg cgcaacgtgg gcttcaaagg ctatggcatt
     1921 ctcgacaagc atatcgtgcg ttgtctttct gaactcagag tgatcgactc gccaaaaccg
     1981 ccgaccacca gaagcggtta tctggcaact gaagcacgga tgcggcagtt ttcggattca
     2041 gtgggcataa attttgacga actcgatttg gtgctttggt ccattaagac cggagaagtg
     2101 ttaaagtagc aaaacagtta tgacgttgca gcgaactacg tcggtccctc ttcgcgcggc
     2161 gatccattcg ttggccgctt cattgatctg ccttgcgctg gcgatcgctg ccaatgcagc
     2221 tcctgataat tcgaagacgc gtgctctcgc gcaaaaagcc ttgcgctccg gagactttga
     2281 gcgcgccgag caactctatc gagagttgct ggcaaaggat gatcacgata ctgacgcccg
     2341 tctcggtctc agccacgcgc tgcagaaaga gagacgtttt caggattcgt tcgatcacgc
     2401 ggcgcgagtg ctggcgctgg atcctttgtc tgcacgagcg cacgctctgc tcggatcggc
     2461 tgtgctggcg gctggagatt tccgtctgtc agtcgaagag tttcgcacag cgctcagtct
     2521 taagtcggac gaagcgatgg ccatcgccgg tttggcgatg gttgatttct acgagaatcg
     2581 aaccagtaac tgcgtcgccg gattgcgtcg cgccgccagc atcgatccgg atgaaccgga
     2641 ttacattttc aaccttggcc aagcggcggc gcgttccgag cgatacaaag aagcggccga
     2701 cgcttacgaa agatttttga tgatcgctcc gcgcaccgac gcggaccggc gcgcgcgcat
     2761 tcgtggcctg atcgattttc tgcgctacct cgggcagcaa ggttcgctct acgaggtcgg
     2821 aggcgctgac cataccgtcc ttgattttga agcaaccgat tatcggccag ttatcaagat
     2881 tcgaataaac ggatcgaagg aagtcctccg cttcgtcctc gacacgggct cgggaatgtc
     2941 cgtcatctcg gaagaaactg cgcgcaagct gggtctcaag ccggtcgcgc gcggcggttt
     3001 ggcgcgcgcc gttggcggcg gcggtcgttt tgaaatcgtt tacgcgtatc tgaattcgat
     3061 cgacattggc gacattcggg tgaccaacgt gccggtttac attcggcatt tttatgatga
     3121 acggaatccg gtagatgggt atttgggaat cgctgcgctc gggcgattgg tcacggcggt
     3181 tgactatggc acgcgccgtc tgacgtttgt tcgccagcgc aatagccagg ccgatctggc
     3241 gacaatcgtt ggccgcgagg acaagtcagc caatcctgcg actatcgaac cgcgcccggg
     3301 aatcgacctg ccggtgcgaa ccacttcgag cggttttctc agcggcgaag tttttatcga
     3361 tggaatcaag aagcctttga actttatcat cgataccggc gccaccgtta cagttttgtc
     3421 cgagaaactg gcggcactcg aagaagcgca gcctttcatg caacaaggtc gaatgcgcgt
     3481 ttttggcgcg gccggcattg ccgaaaatgt gaagatggcg ctgctgccca ggctggcgat
     3541 tggaacttat tcgcaagaca agatcgacgc cgccgtgctc gacctggaac ctgtaaacga
     3601 aacggccggc tttgagcaga gcggcatact gggcggaaac ttcctgcggc actttcgcgt
     3661 cgctttcgat tttcaaaaag gaatcgtgcg gcttgagccg ttgggaaacg caacggtgca
     3721 caatgaaaac tcgccgcgtc ccgaagacgc acagccatga agcagagtac ttatctggag
     3781 acttcggtcg ttggcgctta tctcgacaat ggcgagccgt tccggcgcga tctaacgatc
     3841 cgctggtggg aacatgagtt gtcggagtat cgcgcggtga tctcgccgct ggtcgtgagc
     3901 gaacttgaac gcgtggcaga gccgcatcgt tccgcatacc tcaaactggt tagcggtctg
     3961 gaacaggttg aactcaccga cgaggctgcg attctcgctg aaggttatgt ctcgcgcggc
     4021 atctttcatc gcaagtacat cgccgatgca ttacatgtcg cagttgcttc gttccacaaa
     4081 atcgattatc tagttacatg gaactttggt catctggcga acgttcggcg acaggcgcgc
     4141 atacgtttgt tcaataccgc tgccggattc tttgtgccga tgatcgtgac gccggagttt
     4201 ttagtttctg aaggggctga gaaggaagcg gcaactggat cttgaatttt aaatgtgaag
     4261 ttttgaattt ggaatttgga atttctgagt cctgagtttc atgctgtacc gcagaccgaa
     4321 attcttaacc gtgctactca agattcgcga ggcgatgtcg cgcgaagctg actatgacgt
     4381 cgatctgttt gccgagatgg tgcgttccgg cgcgcggcct gtgtatggac ctgagcgcaa
     4441 cattcgcggc ttcaaaaagc gcgcaccggg aaacaatgaa atcgaactcg atgcgccgat
     4501 tcagcaacgc cggcgcacag cgcgataagc cgctctgaga tttgagattt gaatttcaga
     4561 tttgaaattt cagactattc cataatggac gcgaccttcg aaacgatcgg cctggaagtg
     4621 cccagcgaaa aagcgatcaa ctttctcgct gagcgcgctg agaatcaggg cgagccgacg
     4681 cagctcttgc tgcgcggcgc tgtcttgcat ggccgctgtt ggaaactggg cgaagggctc
     4741 gaagtttggt ccgtgctcta tgaatccggc accggcgacg tgttctacgc gaactgccgc
     4801 ccgggttttc gcgcgcgcta catgcagcgc atcacgccgt gggcgctgac cgaatacgac
     4861 gaagaaggcg aagcagtcgt tcacggttac tgcgacggcg gcgacactga agttctgttt
     4921 gagttgcaga atctaactga agttggggcc ggcggtttcc gtgcgaaagc tttgcatgtc
     4981 ggattgtgcg ggct
//
LOCUS       DASZZE010000204         3876 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_89285, whole genome shotgun sequence.
ACCESSION   DASZZE010000204 DASZZE010000000
VERSION     DASZZE010000204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3876)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3876)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3876
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89285"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2129
                     /locus_tag="VHD88_04020"
     CDS             <1..2129
                     /locus_tag="VHD88_04020"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SUMF1/EgtB/PvdO family nonheme iron enzyme"
                     /protein_id="HVS20986.1"
                     /translation="VFKARHIFLKTQHAIKIILPDLVGNDPNLLTRFRQEALAAAAIR
                     HPNIIAVTDFGVVRGTMPFLVMEFVQGKSLQDIMAEENAMAPARAFELMQPICAGIAA
                     AHRSKIVHRDLKPLNVMIQEGMPISEATKILDFGLAKIKSGELLGSFIAAQTTGLMGS
                     PFYMAPEQWSDEEPDARADIYSLGVMLYQMLCGEVPFKGGSIPSIMKKHVTAEVPSFA
                     SRGIEVPAQIEAVVRHALEKEAEHRTASADEFAAELSRAMAAASATLKRTGESAEVDP
                     SKTIGSGPTEGRSTVPPGSKTAYDPLAGTISSSSLIEDEEKIRVAQEELAREAEARRR
                     LIDNQARQRKTDEGDRQEERRHLEELVAKQTKVLEDKLTALAATMSPKTIAVIDPDAT
                     QVRPTGVATVGDSSYPPGAAQSFAHMDASLAPPKKRSALPLILIVCAVLLIGGGVDGY
                     LVLRSKTSAIPSGPNKPNTPNGTEATIKPELMEIPGGSFQMGRNDGPPAEGPAHPMTV
                     AAFSMDKTEVTNAEYAQFVRDSNHAPPEQWGGIKPPAGQELLPVSNVSYDDAVAFAEW
                     RSKRDGVTYRLPTEEEWEYAARNGDKDNLYPWGNVWQPGRAATQESGVGATQSVGTYA
                     QGINRWGVADLVGNVWEWTSSKASLYKGNPAQLPAQHKDWIVIRGGCYVSSTKSDTPV
                     SGTLRTWFAPNYKNQVLGFRLVKPSS"
     gene            2429..>3876
                     /locus_tag="VHD88_04025"
     CDS             2429..>3876
                     /locus_tag="VHD88_04025"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family peptidase"
                     /protein_id="HVS20987.1"
                     /translation="MDRFRSAGTAGNRSSASFIQGLQTPAQRKGELLIRFRAGVSQLE
                     KDAVIASHGAQRKRLLRGESAIEKLELPGADDATIATAALQLSLNPAVEFAEPNFIIA
                     RDQLNASAPNDPRFSEQWALSNVGQNGGQYGSDIGVTRAWQTTTGSPGVSIAVIDSGI
                     DFTHPDLINNEWTNPLPLNGDPHGWDFVTDTADIKDEQGHGTAIAGIIAAQGNNATGV
                     SGVMWRASLMSLRVLDNTGAGDVANAVEAIDYAVLHGAQVINLSWGTSAQSIALKDAI
                     QRAIRGGAVVVCSAGNSGQDLEAVPYYPASYGLQDLIAVAGTDNFDRLASWSNWGASK
                     VTVAAPGTDILTTQKGGGYWNVSGTSASSPLVSGIVGLMKSTNPALNPHSVAKALSDG
                     ARQVISLSGKVSSGGVVSATGALEQIHGLPNQPLPFPTPNYGNGGSISAGPYVPPALR
                     PDSVGRRANGLDGLRVVAPPTKQGAPLANLPDL"
BASE COUNT          869 a         1094 c         1162 g          751 t
ORIGIN      
        1 tcgtcttcaa agcgcggcac atctttctga aaactcagca cgccatcaag atcattcttc
       61 ctgacctggt cggcaatgac cctaatctgt taactcgctt tcgccaggaa gcgctcgcgg
      121 ccgctgcgat tcgccatccg aacatcatcg cggtcactga ctttggcgtg gtgcgcggca
      181 cgatgccttt cctggtgatg gagtttgtgc agggcaagtc tctacaggac atcatggccg
      241 aagaaaacgc gatggcgccg gctcgcgcgt tcgagttgat gcaaccaatc tgtgcgggca
      301 tcgccgccgc gcatcgatcg aagatcgtgc accgcgatct caagcctctg aacgtcatga
      361 ttcaggaagg catgccgatt agcgaagcca cgaagatcct cgacttcggt ttggcgaaga
      421 tcaaatccgg cgagttgctg ggttcattta tcgccgcgca gacgacgggt ttgatgggct
      481 cgccgtttta catggcgcca gagcaatggt cggacgaaga gccggacgcg cgcgccgaca
      541 tctacagtct cggcgtgatg ctctatcaaa tgctctgcgg cgaagtgccg ttcaagggcg
      601 gctcgattcc atcgatcatg aaaaagcacg tgactgccga agtgccgtcg tttgcttcgc
      661 gcggcattga agtgccggcg cagatcgaag ccgtcgtgcg tcacgcgctg gagaaagagg
      721 cggagcacag aactgcgtcg gcggacgaat ttgccgccga gttgagccgg gcgatggctg
      781 cggcgagcgc aactctgaaa cgaaccggcg aatcggcgga agtcgatccg tcgaagacaa
      841 tcggttcggg tccgaccgaa gggcgatcca cggtgccacc cggatccaag acggcgtacg
      901 atccgctggc cgggaccatc agcagctcgt cgctgatcga agacgaagaa aagatccggg
      961 tcgcgcagga agaactggct cgcgaagccg aagcccggcg ccggcttatt gataaccagg
     1021 cgcgtcagcg aaaaacggac gaaggcgatc gacaagaaga gcgtcggcac ctcgaggaac
     1081 tggtggccaa gcagacgaag gtgctcgaag acaagctgac ggcgctggcg gcaacgatgt
     1141 cgcccaagac aattgccgtt atcgatcctg acgctactca agtacgaccc accggagtcg
     1201 cgaccgttgg cgacagcagc tacccaccag gcgccgccca gtcgttcgcg cacatggacg
     1261 ccagccttgc gccaccgaag aagagatccg ctttgccatt gattctgatc gtgtgcgcgg
     1321 tgcttcttat cggtggcgga gtcgacggat atctggttct gcgatctaag acttctgcga
     1381 ttccgtcagg tccgaataaa cccaacactc caaacggaac cgaagcgacg atcaaaccgg
     1441 aactgatgga gattccgggc ggctcgtttc agatgggcag aaacgacggc ccgcccgccg
     1501 aggggccggc gcatccgatg acagttgctg ctttctcgat ggataagact gaagtgacga
     1561 acgcggagta tgcgcagttt gtgcgagaca gcaatcacgc gcctccggaa caatggggag
     1621 gcatcaaacc gccggccggt caggagttgt tgccggtgtc gaacgtttct tacgatgatg
     1681 cagttgcgtt tgccgagtgg cgctcgaagc gtgacggcgt aacgtatcgg ctgccgaccg
     1741 aggaagaatg ggaatacgcg gcgcgcaacg gcgacaagga caatctttat ccctggggca
     1801 acgtgtggca accgggtcgt gcggctactc aggaatcggg cgtgggagcg acgcagtccg
     1861 tcggaactta tgctcaggga ataaaccgct ggggtgtcgc ggatctcgtc ggcaacgttt
     1921 gggaatggac atcgtcaaaa gcgtcgcttt acaaaggcaa tccggcgcag cttcctgctc
     1981 aacataaaga ctggatcgtg attcgcggcg gctgctacgt cagctcgact aagagcgata
     2041 cgccagtgag cggaacgctg cggacctggt ttgcgccgaa ttacaaaaac caggtgttgg
     2101 gatttcgtct ggtgaagccg agttcgtagt ctcgatgaac ttgacactca actccgcctt
     2161 gaaaaagatc gcaaacggca agaatttcgc aaccttctag ccttctccgg ggagtatgaa
     2221 tctttcgctc ttcgacttcc caaggaatgc actatccccc gaaagcgtcc cttttttagg
     2281 agcttcacac aaatgaatac tcgccaccgc tcgacttcca gttccacgga tagttctggc
     2341 tcgatttcag ttcttgtgac cttttgcttg ctgatttcgg ctttcagccc ttccctgatg
     2401 cgaaaggact caagcttctt catcaattgt ggacagattc cgctcggcgg gtaccgcggg
     2461 caatcgcagc tcagcgtcgt tcattcaagg cttgcagaca cctgctcagc ggaaaggtga
     2521 actactgatt cgctttcgcg ccggagtctc gcagcttgag aaagacgccg tcatagcctc
     2581 gcacggagcg cagcgaaaaa gactgcttcg cggcgaatca gcaatagaaa aacttgagtt
     2641 gcctggcgct gatgacgcga cgatcgcgac tgctgctttg caattgagtc tcaacccggc
     2701 ggttgagttt gccgaaccaa acttcatcat cgctcgcgac caacttaacg catccgcccc
     2761 aaacgatcct cgattttcag agcaatgggc gctcagcaac gttggacaaa acggcgggca
     2821 atatggctcc gacattggcg tgacgcgggc ttggcaaaca acgacgggca gtccgggcgt
     2881 ttcaattgcg gtgatcgata gcggaatcga ctttacgcat cctgacctca tcaacaatga
     2941 atggacgaac ccgctcccct tgaacggaga tccgcacggt tgggacttcg ttaccgacac
     3001 agccgacata aaggacgagc aaggccacgg gaccgccatc gcgggcatca tcgcggcaca
     3061 aggaaacaac gcgacgggcg tcagcggagt aatgtggcgg gcgagtttga tgagtctgcg
     3121 cgtcctggac aacaccggcg ctggtgacgt ggccaacgcg gtagaagcca tcgactatgc
     3181 agtcttgcat ggcgcgcaag tgatcaatct ttcgtggggc accagtgcac agtcgatcgc
     3241 attgaaggat gcaatccagc gggcgattcg tggcggtgcg gtggtggttt gctcagccgg
     3301 aaacagcggc caggatttgg aagcagtgcc ttactatccg gcgtcgtatg gcctgcaaga
     3361 tcttatagcc gtagccggca cggacaattt cgatcggctg gcatcctggt cgaactgggg
     3421 cgcgagcaaa gtaaccgtcg ccgctccggg aacggacata cttacaactc agaagggcgg
     3481 cggctactgg aacgtcagtg gaacatcggc gtcatcgccg ctggtcagtg gcatcgtcgg
     3541 cttgatgaag agcactaatc ccgcgctaaa cccgcacagc gtggccaaag cgcttagcga
     3601 tggcgcaaga caagtaatct cgctttcagg caaagtttct tcaggcggag tcgtgagcgc
     3661 cacgggggcc ctggagcaaa tacacggatt gcccaatcag ccgttgccat ttcccacgcc
     3721 gaactatggc aacggcggca gcatctccgc aggtccgtat gtgccgccgg cattgcgccc
     3781 agactccgtc ggacggaggg cgaacggcct ggatggattg cgtgtcgtcg caccgccaac
     3841 gaagcaaggc gcgccgctgg ctaatctccc ggatct
//
LOCUS       DASZZE010000205         7433 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_187021, whole genome shotgun sequence.
ACCESSION   DASZZE010000205 DASZZE010000000
VERSION     DASZZE010000205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7433)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7433)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7433
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187021"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1303)
                     /locus_tag="VHD88_04030"
     CDS             complement(<1..1303)
                     /locus_tag="VHD88_04030"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HVS20988.1"
                     /translation="MKSFRFRILLALGLILLLTFGASFAQQSRRDRKTLPARATAGAS
                     SRPRLVLLIVVDQFRYDYFERFGDLFGSHGIGRLMREGASWTDANFDHVPTFTAPGHA
                     VLMTGAWPSETGIVANEWYERETEKKVKSVSDDSTRMLAGKPGEKGYSPRRLLCSTVG
                     DELRLADNDRSKVIGISAKNRSAILPAGRHATAAYWFSTDNGNMISSTFYFDRLPDWV
                     VRFNQRRMADGWFGARWDRLLPNEAEYLRRAGKDDVPWENLDKSSNDTNFFPHVVTGG
                     ADAPGKPFYRALDYTPLSNDLLVAFAESAIANEKLGGGEDTDMLSVSFSANDYVGHRF
                     GPYSQEAMDITLRVDRQIGTLLDFVDARVGLRNTVVVFTADHGASPVPEQAAQMNLPG
                     RRYQKADLLKIAEDALKARYARKDRPATDYIQTFSNGERTED"
     gene            1501..2025
                     /locus_tag="VHD88_04035"
     CDS             1501..2025
                     /locus_tag="VHD88_04035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20989.1"
                     /translation="MGELDEAWELALAEAAQRARTAGRADIADYLDLRAQNDLLRRTA
                     IDWLTNTVISLAADANRGGAGIQIEQKDAHSFRRGHATMVGPQLTLRSGVRALTIESG
                     WPRTPRDGFVRGGGLACADIKHFGRQRSNAELLLALSSSGAPQWLLLEQTGATPLFTE
                     AQIRKHFSVLLTES"
     gene            2032..2901
                     /gene="rsmI"
                     /locus_tag="VHD88_04040"
     CDS             2032..2901
                     /gene="rsmI"
                     /locus_tag="VHD88_04040"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: protein motif:HMM:TIGR00096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0000451 - rRNA 2'-O-methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HVS20990.1"
                     /translation="MAGTLYIVATPIGNLEDITQRAQRVLREVNLIACEDTRHTRVLL
                     NHFGIKTKTISYHEHNERERAEELCRLLESEKNIAVVSDAGTPLISDPGFRIVNAATE
                     RGIMIVPIPGPTALVAALVASGLPSAQFFFGGFLPARASARRARLEEVRAIPATLIFY
                     EAPHRIVATLKDALDALGNREAVIARELTKLHEEIARGSLEELAGRFADDAPARGEMV
                     LVISGHTVSASRITKARSSADAEASLVARVNELESEGLDPKVALKKAARELGLKRAEA
                     YRLLVVQKNRRGR"
     gene            complement(2964..4130)
                     /locus_tag="VHD88_04045"
     CDS             complement(2964..4130)
                     /locus_tag="VHD88_04045"
                     /inference="COORDINATES: protein motif:HMM:NF023166.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsiV family protein"
                     /protein_id="HVS20991.1"
                     /translation="MKNRNRLLFTLLVIGFIALGSCRKQPSGSQQNANNNAPTAAQDA
                     PIGGAAQTGDKFYFRGTIAGNLTIEMALVRDGDRLTGSYFYPKVGKNIELKGTIDKSG
                     NVELKESDESGKDTGVFKGKWKPSADSAELDLSDIEGKWSKPDGSKETAFLVLQQPIE
                     FTATARVAPKVIKEANKQARYTIDAEYPQIDGDTRFDKFNKEARGLITKDVAAFKSGE
                     SVQETDPGSETPAETLDSTLGVGYDFRLATDDLISVEFTEGQYERGAAHPNSFTTVLN
                     YDVKNGKKLALADLFNAKANYLSVISSYCISDLRRQSKKDKEGMLDEEMMKSGASARA
                     DNYKAWAITKKGLWITFDPYQVAAYAAGPQHVLVPYSAMKDIIRSDGPVALFAK"
     gene            complement(4174..4755)
                     /locus_tag="VHD88_04050"
     CDS             complement(4174..4755)
                     /locus_tag="VHD88_04050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20992.1"
                     /translation="MGVAKLTDLNTIVPESKYARIERERRYLLQDLPEGLTRADHHLQ
                     ITDNYITGTRLRIRKVRDPRTNKWTVKFTQKFAINPLDFSHTIITNIYLNATEAEVLS
                     VFEANEIRKNRYPFDFEGRKFSIDMFLGDLFGLVLAEASFESDEELDSFAKPPWALAD
                     VTNVEVFTGGRLCELTFEDIRNEIARSSLIGTK"
     gene            complement(4790..5041)
                     /locus_tag="VHD88_04055"
     CDS             complement(4790..5041)
                     /locus_tag="VHD88_04055"
                     /inference="COORDINATES: protein motif:HMM:NF027602.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4926 domain-containing protein"
                     /protein_id="HVS20993.1"
                     /translation="MAYHLFTRVALKDDLPAHGLQRGDVATIVDSHPGKEEHEQGYSL
                     EVFSAIGETIAVVTVRESQIEPLAPDEVLHVRRLAELLA"
     gene            complement(5402..6388)
                     /locus_tag="VHD88_04060"
     CDS             complement(5402..6388)
                     /locus_tag="VHD88_04060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20994.1"
                     /translation="MAASGAADVRRARLTDSTAIQTPTRPRTVTSTSAQVPSFGPGAS
                     LHGKQLFPPDNPWNQDISSLPVDPNSANLIASIGLNDVLHPDFGTTWRGVPNGIPYIV
                     VDGTQPLVPISFTAWGAESDAGPYPIPRNAPIEGGPNSDSDRHVIVIDRDRWKLYEMF
                     DAHPVNNGSSWNAKSGAVFDLKSNAVRPEGWTSADAAGLPIFPGLVRYDEVFEQREIK
                     HALRFTVGHSRRAYVYPARHYASGNTDPNLPPMGMRVRLKASSDISKYSPTLQVILRA
                     LKKYGMFVADNGGGWFLSGASDPRWSDDELGMLKTIRGSNFEVVRMGTILTK"
     gene            complement(6794..6943)
                     /locus_tag="VHD88_04065"
     CDS             complement(6794..6943)
                     /locus_tag="VHD88_04065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20995.1"
                     /translation="MNKMGIAWVSYEGKHFEYKPAIPGEHYKLIVAATWEKVKQNPEA
                     KRVLL"
     gene            complement(6940..7383)
                     /locus_tag="VHD88_04070"
     CDS             complement(6940..7383)
                     /locus_tag="VHD88_04070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS20996.1"
                     /translation="MNRKLVALHALSHARRGFLFANALSANIYFVTAKHLSLALSRAL
                     VDAHNRSQETDWEILPQEAGPGEVILSRRNELGLLSNFAPTPFVFHGKRYASLEGFWQ
                     MMKYPEGPNDPRAKCPGLEWKYTREQVAQMVSFEANHGARSRAIT"
BASE COUNT         1573 a         2132 c         2035 g         1693 t
ORIGIN      
        1 catcctcggt tcgttctccg ttcgaaaaag tctgaatgta atcggtggcg ggacgatcct
       61 tgcgagcgta gcgagctttc aatgcatcct cagcgatctt cagcaagtcg gctttttgat
      121 atcgccggcc cggaagattc atttgcgcag cttgttcggg gaccggcgac gcgccgtgat
      181 cggccgtgaa caccacgacc gtgttgcgca aacccacgcg cgcatcgaca aaatccagca
      241 gcgtcccgat ctgtcgatcg acgcgcagtg tgatgtccat cgcttcctga ctgtatggcc
      301 caaagcgatg gccgacatag tcgttcgccg aaaaacttac cgatagcata tcggtatctt
      361 caccgccgcc gagtttttcg ttcgcaatcg cactttcagc aaacgcaacc agcagatcat
      421 tcgacaacgg tgtgtaatcg agcgctcggt agaacggctt gcccggcgca tcggcgccgc
      481 cggtcacgac gtgcggaaaa aagtttgtgt cgttcgaaga cttgtcgagg ttttcccacg
      541 gcacatcgtc tttgccggcg cgccttaaat actcggcttc gttgggcaac aaacgatccc
      601 agcgcgcgcc gaaccagccg tccgccatgc gccgttggtt gaagcgcact acccagtcag
      661 gcaatcgatc gaaatagaac gtgctggaaa tcatgttgcc gttgtccgtg ctgaaccagt
      721 aagcagccgt cgcgtgtcgc cccgcgggca aaatcgccga gcgattcttt gcggagattc
      781 cgatcacctt cgatcgatcg ttatcggcca gacgcagttc gtcaccgacg gtggagcaca
      841 acagtctccg cgggctgtag cccttctcgc cgggctttcc cgcaagcatg cgagtgctgt
      901 cgtcgctgac cgactttact ttcttttccg tctcgcgctc gtaccattcg ttggcgacga
      961 tcccggtctc ggacggccat gctcccgtca tcaacacggc atgaccgggc gcggtgaacg
     1021 tcggcacgtg atcgaagttg gcatcagtcc acgaggcgcc ttcgcgcatc aagcgaccga
     1081 tgccgtgcga gccaaacaga tccccaaaac gttcaaaata gtcgtagcga aattgatcga
     1141 cgacgatcag caaaaccaga cgcgggcgcg aactggcgcc ggctgtcgcg cgggcaggca
     1201 gcgtctttcg atctcgcctc gactgctgcg cgaacgatgc tccaaaggtc agcagcagga
     1261 tcaaacccag cgccaacaga attctgaaac gaaagctttt cattcgacgg cgacgcgcct
     1321 cgcggaaatg atgaatcaac atatgaagga gagacaaatt gggcggccat gataacatca
     1381 atgaaagggc aaaaggaaaa gggtaaaagt cccgcaaact tcggtgtgtc gactgatagt
     1441 ttagaagcgg gctaccgccc gcttggtcgg gcgttagccc gactctaaac ggaacgcgcg
     1501 atgggcgaac ttgacgaagc atgggagctg gcgctggctg aagcagcgca aagagcgcgc
     1561 accgctggtc gcgcagacat cgctgattat cttgacctgc gcgcgcaaaa tgatctactg
     1621 agacgcacgg cgatcgactg gctgacgaac acagtaattt cgctcgctgc tgacgcaaat
     1681 cgtggcggcg ccggcattca gatcgaacaa aaggacgcgc acagctttcg ccgaggacac
     1741 gcgacgatgg tgggacctca gctcactcta cgcagcggcg tgcgcgcctt gacgatcgag
     1801 agcggttggc cgcgcactcc gcgcgacggg tttgtgcgcg gcggcggcct ggcctgcgca
     1861 gacatcaaac actttggtcg gcagcgatcg aatgcggagt tgttgctggc actctcatcc
     1921 agcggcgcgc cgcaatggct tttactcgag cagaccggag cgacgccgct cttcactgaa
     1981 gcgcagattc gcaaacactt ttcggttctt ctaaccgaat cgtaaaagcc tatggccgga
     2041 acgctttaca tcgtcgcgac accgattgga aacctcgaag acattacgca gcgcgcgcag
     2101 cgcgtgttgc gcgaagttaa tttgatcgct tgcgaagata cgcgacacac gcgcgtgctg
     2161 ctgaatcact tcggtatcaa gacgaaaacc attagctatc acgaacacaa cgagcgtgaa
     2221 cgtgcggaag agctttgccg tttgttggaa tcggaaaaga acatcgcagt cgtatcagat
     2281 gcaggcacgc ccttgattag cgatccaggt tttcgcatcg tcaacgccgc gactgaacgc
     2341 ggcatcatga tcgttccgat tcccggtccg acagctttgg tcgcggcgct cgtcgcctca
     2401 ggcctgccat ctgctcagtt cttcttcggc ggctttctgc ccgcacgcgc gagtgcgcga
     2461 cgcgcgagac tcgaagaagt gcgcgcgatt cccgcgacgc ttatttttta cgaagcgccg
     2521 catcgaatag tcgccacgtt gaaagatgcg ctcgatgcgc tcggcaatcg cgaggccgtg
     2581 atcgcgcgcg aactgacaaa acttcatgaa gagattgcgc gcggcagttt ggaagaattg
     2641 gcggggcgct ttgctgatga tgcgcccgcg cgtggcgaga tggttttggt tatcagcggt
     2701 cacaccgtga gcgcgtcgcg gatcaccaaa gctcgctcat ccgcagatgc ggaagcttca
     2761 ctggtcgcac gcgtgaacga gctggaaagc gagggattgg acccgaaagt cgcgctgaag
     2821 aaagcggcgc gcgagttagg attaaagcgc gccgaagcct atcggttgct tgtcgttcaa
     2881 aagaatcgcc gcggcagata aaagaccagg ctgaccgaaa gccaaagcgg cacgcgctaa
     2941 gcttgccatc gcactccaca aaatcatttc gcaaacaaag caaccggccc gtcggatctg
     3001 atgatgtctt tcatcgccga gtacggaacc agcacgtgct gcgggccggc agcgtaagct
     3061 gcgacctggt aaggatcgaa cgtaatccac aaacctttct tcgtgatggc ccaggctttg
     3121 taattgtccg cgcgcgccga cgcgccggac ttcatcattt cttcgtccaa cattccttct
     3181 ttatctttct ttgattgccg ccttagatcg ctgatgcaat acgaagaaat cacgcttaag
     3241 tagttggcct tcgcattgaa gagatcggcg agcgccaatt tcttcccatt cttcacatcg
     3301 taattgagta cggttgtgaa actgtttggg tgcgcggcgc cgcgttcgta ctgcccttcg
     3361 gtgaactcga cgctgatcaa gtcgtcggtc gcgagccgaa aatcgtatcc aacccccagc
     3421 gtcgaatcca gtgtttccgc cggcgtctcg ctgcccggat cggtctcttg gacgctctcg
     3481 ccgctcttaa acgcggcgac gtctttcgtg atcaggccgc gcgcttcttt gttgaatttg
     3541 tcaaagcgcg tgtcgccgtc gatctgcggg tactccgcgt caatcgtgta gcgcgcttgc
     3601 ttgtttgctt ccttgatcac tttgggcgcg acgcgcgctg tggcagtgaa ctcgattggc
     3661 tgttgcaaaa ccaggaacgc ggtttctttc gagccgtcag gctttgacca cttcccttcg
     3721 atatcgctca gatccagttc cgcggagtcg gctgacggct tccatttgcc tttgaatacg
     3781 ccggtgtctt tgccgctttc atcagactct ttcagctcga cgtttccgct cttatcaatc
     3841 gtccctttca gttcgatgtt cttgccgact tttggataga agtaactgcc ggtcagccga
     3901 tcgccatcgc gaaccagcgc catttcgatc gtgagattgc cggcgatcgt tccgcgaaaa
     3961 tagaacttgt cgccggtttg cgcggcgccg ccgatgggcg cgtcctgcgc ggcagttggg
     4021 gcattgttgt tagcattctg ctggctgccg ctcggctgct tgcgacagga gcccaaagcg
     4081 atgaagccga tgaccaggag agtaaataga agtcggttgc ggtttttcat cgtgggatcg
     4141 atcctctttg tctctgcgcc tccgttaaat gatctacttc gtaccaatca gcgagctgcg
     4201 cgcaatttca tttcgaatgt cttcaaacgt cagctcgcac aacctgccgc ctgtaaatac
     4261 ctcaacgttg gtcacgtccg caagcgccca cggcggcttt gcgaaactgt cgagttcttc
     4321 atcgctttca aagctcgcct ccgcgagcac cagtccgaac agatcgccga gaaacatgtc
     4381 gatggaaaac tttcgacctt cgaagtcgaa tgggtagcgg ttcttgcgaa tttcattcgc
     4441 ttcgaaaact gacaggactt cagcttccgt cgcgttgaga tagatgttcg tgattatcgt
     4501 gtgcgaaaag tccagagggt ttatcgcgaa cttctgcgtg aacttcacgg tccatttgtt
     4561 tgtccgcgga tcgcgcacct tgcgaatgcg cagccgcgtg ccggtgatgt agttgtcggt
     4621 gatttgcaga tgatgatccg cgcgcgtcaa cccttcgggc aaatcctgca agagatagcg
     4681 tcgctcgcgc tcgatgcgcg cgtacttgct ctcaggaacg atcgtgttga ggtctgttag
     4741 cttggcaaca cccatgctgt gtcatgaatc atggaaggac ttcggagaat tacgctaaca
     4801 attcagctag ccggcgaacg tgaaggactt cgtcgggcgc aagcggttcg atttgcgatt
     4861 cgcgcaccgt tacgaccgcg atggtttcgc ctatcgcgct gaagacctct aatgaatagc
     4921 cttgctcgtg ctcctccttg cccggatggg aatcgacaat cgtcgctaca tcgccccgct
     4981 gcaaaccatg cgccggcaag tcgtccttga gagccaccct ggtgaacaaa tgataggcca
     5041 tcctcaatcc tccttcgacg ggtacaaagt aatgaattta gttttgctgg tggcgctttc
     5101 gatcatccaa atgcttgcaa ttcgcaacac ctgcccgttg ggacaggtga gcggcccgac
     5161 gatgtaatac atctcgccat attctgtact ctcttcgaat ttggcttcca atgtaagcag
     5221 ttgttgccgg atgtccgcag ccagttgatc tgcgtgctgt tcagtatagc ccgcttgcgc
     5281 caggaactgc gacttgtcat tctcaggtcg ccattacagg agataatcag ccatcttttc
     5341 gatggcaatg atggcgttag acggtaattt catcgattca atcgagcggc ttagactcta
     5401 ttcatttagt caagatcgtt cccatccgca cgacttcgaa gttcgagcct ctaatggttt
     5461 tcagcattcc cagttcgtca tcgctccaac gcggatcgga cgcaccactc agaaaccagc
     5521 ccccgccgtt gtcggcaacg aacattccat acttcttcag tgctcttaag atcacctgaa
     5581 gtgtcggcga atacttcgag atgtcggacg atgccttcaa gcgcacacgc atacccatcg
     5641 gcggcagatt cggatccgta ttgccactgg catagtggcg cgcgggataa acgtaagctc
     5701 ttcgagaatg cccgaccgtg aaccgtagcg cgtgtttgat ttcgcgttgc tcgaatactt
     5761 cgtcgtaacg cacaagcccg ggaaaaatcg gcagcccggc cgcatccgcg gaagtccacc
     5821 cttccggtcg cacagcattc gatttcagat cgaagacggc gccgctcttg gcgttccagc
     5881 tcgagccgtt gttcaccgga tgcgcgtcga acatctcgta cagcttccat cgatcgcgat
     5941 cgattacgat cacgtgacga tcgctgtctg agtttggtcc gccttcaatc ggcgcgttgc
     6001 gcgggatcgg ataggggcca gcatcgctct cagctcccca ggcagtgaag ctaatcggca
     6061 ccagcggctg agtgccatcg actacgatgt aaggaattcc attcggcacg cctctccacg
     6121 ttgtgccaaa gtccgggtgc aacacatcgt tgagaccgat gctcgcgatc aagtttgcgg
     6181 agttcggatc gaccggcaga cttgaaatgt cctggttcca tggattgtcc ggcggaaaga
     6241 gttgcttgcc gtgcaggctc gcgcccggcc cgaaactggg cacctgggcg gaagttgatg
     6301 tcaccgtgcg cggccgcgtc ggagtctgaa tcgccgtcga atcagtcaat cgtgcacgac
     6361 gaacatcggc cgcgccgctt gctgccaaga ctaagaccgc aagacagaac gttcctccca
     6421 acaaaaagac gcgcaaatga acgcgatcct tcagagccac tcaaatcacc tgcgaccgaa
     6481 gtagtataat cctcttcgcc cacaggtcgg agcgcaatca tccaccatca gctccaaggg
     6541 ttgtctcctt caaatcgtca cagttcccct gcttgccctc ggtgacagaa gcgacgcact
     6601 tgtcggctct ttttggatcg actttgcttt aagtaagacg agggattcgg gaggctgtca
     6661 tgagtcgcaa atgctagctt atggctgctt ttgcagctcc ctgcgtatct tcatgaggat
     6721 ttcatagtag cgccacgcag ccggcgcgtt tggttcttga tggtgatccg gtttgaggat
     6781 tagatcgccg gtgctaaagc aaaactctct tcgcttccgg attctgtttc actttttccc
     6841 aggtcgcggc aacgatcaat ttgtagtgct caccgggaat ggcaggtttg tattcgaagt
     6901 gctttccttc atagctcacc cacgcgatgc ccatcttatt catgttatcg ctcgcgagcg
     6961 cgccccgtgg tttgcttcga agctaaccat ttgcgcgact tgctcgcgcg tgtatttcca
     7021 ctcgaggccg gggcacttcg cgcgcggatc gttcgggcct tctggatact tcatcatctg
     7081 ccagaagcct tccaaactcg cgtagcgctt gccgtgaaag acgaacggcg tcggcgcgaa
     7141 attcgaaagc aagccaagtt cgtttcgcct agaaagaatt acttcgcccg gccccgcctc
     7201 ttgcggcaga atttcccaat cagtttcttg ggatcgatta tgggcgtcca ccaatgcgcg
     7261 ggataacgcg agcgagagat gttttgcggt gacgaagtag atatttgctg acaatgcgtt
     7321 cgcaaacaaa aaaccgcgcc gagcatgaga gagagcatgc agcgcaacta gcttgcgatt
     7381 cattttcttg aagagtgggc gccgcgagcg agaaggagca cgcgcgcgac ctg
//
LOCUS       DASZZE010000206         5969 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_316353, whole genome shotgun sequence.
ACCESSION   DASZZE010000206 DASZZE010000000
VERSION     DASZZE010000206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5969)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5969)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5969
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_316353"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..780)
                     /locus_tag="VHD88_04075"
     CDS             complement(<1..780)
                     /locus_tag="VHD88_04075"
                     /inference="COORDINATES: protein motif:HMM:NF024900.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HVS20997.1"
                     /translation="MSTELIKVTINAKDFQVPKGARLIDVCREKQFDIPSFCYYADLA
                     LQASCRMCLVRIEKMPKLQTSCTIICTDGMVVTTQSEEIEKAQRAMMEFLLANHPLDC
                     PVCDRGGECELQEMAFDWGGLEERFTEKKNYYPEKYLSPMVANDPQRCILCKRCTRVC
                     DEWMGEDAIEAGNRGANTVIGTYGDWLNCSQCGNCIEVCPTGTLLDGTYRHQARPWEL
                     VQTVSTCAYCSDGCQMSLGSRSGELMRIVARDRYVNGLNGEF"
     gene            complement(892..2181)
                     /gene="nuoF"
                     /locus_tag="VHD88_04080"
     CDS             complement(892..2181)
                     /gene="nuoF"
                     /locus_tag="VHD88_04080"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR01959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoF"
                     /protein_id="HVS20998.1"
                     /translation="MFIGAIGCEPLQLRRVHLENSRSLEVYRQNGGYEAIKKVLDSMS
                     PDDVINEVKKSALRGRGGAGFPTGMKWSFVPKDSPKPKYVVCNADESEPGTFKDRYLM
                     ERDPHMLIEGMLIAAYALGAKTNYIYTRGEYKYLIDIMDVALDEARAAGLLGERILGG
                     NFSCEIYTHTGAGAYICGEETALLSSLEGMRGHPRMKPPFPAVSGLYASPTVVNNVET
                     LTAVPDIIKMGGEAYQKLGTEKSGGTKLWSVSGHVNRPGVYELPMGYDDMEKFIMEDC
                     GGIANDKKLKAVIPGGSSVYIMRADQIIGKDVRMDYEGLVAGGSMVGSGGFIVMDETV
                     DIFESTKNLTEFYKHESCGWCTPCREGTDWLVKIFKRIESGGGRPDDAQLMLDLCDNI
                     EGKSFCPLGDAAAWPIQSAVKRFPEDFEKHLVGNGKT"
     gene            complement(2365..2895)
                     /gene="nuoE"
                     /locus_tag="VHD88_04085"
     CDS             complement(2365..2895)
                     /gene="nuoE"
                     /locus_tag="VHD88_04085"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF005722.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoE"
                     /protein_id="HVS20999.1"
                     /translation="MSQQLTQIAPLSQPVQMPDEVATFSPEVEAEIDRHLAKYPVMRS
                     AILPLMFIVQRERGYLDPPGVSYLAQRLNLRITDIWEVATFYSMIHIKPIGKYHIQVC
                     KTLSCKLLGSDKITRLCEKKLGIKVGETTGDGRFSLSEVECLGSCGTAPMFQINFDYH
                     ENLTPEKVDQILDGLP"
     gene            complement(2892..4109)
                     /gene="nuoD"
                     /locus_tag="VHD88_04090"
     CDS             complement(2892..4109)
                     /gene="nuoD"
                     /locus_tag="VHD88_04090"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HVS21000.1"
                     /translation="MSTSVDIPSQFEVIDRPLDTQMTISMGPQHPSTHGVLRLELVLD
                     GEMVVKTTPDIGYLHTGMEKLFEYKKYQQGIVITDRMDYLNPLGNNLAYVMAVEKLLQ
                     IEIPERAQTIRVLMCELQRIASHLVWLGTHALDLGAMTVFFYCFREREKIMNLIEAAS
                     GSRLTPSYFRIGGLMMDLPSGFERRVKQFLDGFPKALDDFDKLVTGNRIFQKRTQGVG
                     YISAEDAIDWGLSGPSLRGSAVELDIRRANPYTGYEKYDFEIPTEPDCDVWARYLVRM
                     REMKESHKIVEQALSRLRPGPVKADAPKVVLPDREAMKTHMDALIHHFLIVAEGFDVP
                     AGEVYQPIEASKGELGVYIKSTGGPKPARVHFRGPSFVNLSALPHMSHGAMIADIVAI
                     IGSLDIVLGEIDR"
     gene            complement(4260..4799)
                     /locus_tag="VHD88_04095"
     CDS             complement(4260..4799)
                     /locus_tag="VHD88_04095"
                     /inference="COORDINATES: protein motif:HMM:NF012549.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HVS21001.1"
                     /translation="MEEQRNVQGGQPDDQSSETERTTTPSLIAAALQREHPDSITEVV
                     DALGETTITIPRDHIAAACEFLKTAPGIEFNFLADLCGFDRGPEEEPRFEVNYHLFST
                     TKHHRVRLKVLLNEDDAHVPSVNGIWRTANWHERETYDLFGVVFDGHPDLRRILFLMI
                     VRVTRCEKIFRCEVTSRTA"
     gene            complement(4884..5513)
                     /locus_tag="VHD88_04100"
     CDS             complement(4884..5513)
                     /locus_tag="VHD88_04100"
                     /inference="COORDINATES: protein motif:HMM:NF005012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B family
                     protein"
                     /protein_id="HVS21002.1"
                     /translation="MGLENIIAEALPEVLTTRLDSLINWARKSSLWPATFGLACCAIE
                     MMNATSSRNDLARFGAEVFRASPRQADVMIVSGRVSRKMAPVLRRIYDQMPEPKWVIS
                     MGACATSGGVFDNYAIVQGVDKIVPVDVYIPGCPPRPEMLIHAVMMLQDKVMKESIRD
                     RRDAPEQEAREALTPGTLPVTDGSTLRQTDATTSRAYTIASTHEKRRSF"
     gene            complement(5561..>5969)
                     /locus_tag="VHD88_04105"
     CDS             complement(5561..>5969)
                     /locus_tag="VHD88_04105"
                     /inference="COORDINATES: protein motif:HMM:NF012717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HVS21003.1"
                     /translation="AGFAVTFITLSQFVGQRKRTRTKLMPYECGKDPVGSARERFSVK
                     FYLIAMIFILFDIEVIFLVPWAVVFKRLSSPEYGLRNLVYFEMLVFIALLAVGLIYVI
                     KKGAFDWSDRARHEAQAEARLLETVEKQTKKAA"
BASE COUNT         1365 a         1712 c         1530 g         1362 t
ORIGIN      
        1 gaactcgcca ttcagtccgt tcacatagcg atcgcgcgct acgatgcgca tcaactcgcc
       61 gctgcgtgaa ccgagcgaca tctggcagcc atcggagcaa tacgcacaag tggaaaccgt
      121 ctgcaccagt tcccagggtc gcgcctgatg acgataggtt ccgtcaagca gagttcctgt
      181 cgggcagacc tcgatacagt tgccgcactg agaacaattc aaccaatcac cgtaagtgcc
      241 gatgaccgta ttcgcgccgc gattgccggc ttcaatcgcg tcttcgccca tccattcgtc
      301 gcagacacgc gtgcaacgct tgcacaggat gcagcgctgc ggatcgtttg cgaccatagg
      361 cgagagatac ttttcgggat agtaattttt cttttcggta aatcgctctt cgagtccgcc
      421 ccaatcgaac gccatttcct gcagttcaca ttcaccacca cggtcgcaca caggacagtc
      481 aagcggatga ttcgcgagca gaaattccat catcgcgcgc tgagcttttt cgatctcttc
      541 gctttgcgtg gtcacaacca tgccgtcagt gcagatgatc gtgcacgagg tctgcagctt
      601 aggcatcttc tcgatccgca ctaggcacat gcggcaggag gcctgcaaag ccaggtcggc
      661 gtaataacag aacgacggaa tgtcgaattg cttttcgcga cagacgtcga tgaggcgcgc
      721 gcctttaggc acctggaagt ctttcgcgtt aatagttacc ttgattagtt ctgtggacat
      781 cgaaatcaat taaagtaata agaacctaac cgcagagggc gcaaagggtt tcgcggaggt
      841 cgcagaggaa aaccttggcg tcctctgcga aatcctctgc gttctctgcg tttaagtctt
      901 cccgttccca accagatgct tctcaaaatc ttctggaaat ctcttaactg ctgattgaat
      961 cggccatgcg gcggcatcgc ccaaaggaca gaacgatttg ccttcgatgt tgtcgcagag
     1021 gtccagcatc aattgtgcgt cgtcgggtcg tccgccgccg ctttcaatgc gcttgaagat
     1081 ctttaccagc cagtcggtgc cttcacggca gggcgtacac caaccgcacg attcgtgttt
     1141 gtagaactca gtcaggttct tggttgattc aaatatgtcg accgtctcat ccatcacgat
     1201 gaaaccgccg gagccgacca tcgagccacc ggcaaccaaa ccttcgtaat ccatgcgcac
     1261 atctttaccg atgatttgat cggcgcgcat gatgtaaacg gacgagccgc cgggaatcac
     1321 agctttcagt ttcttatcat tcgcgatccc gccacagtct tccatgatga acttttccat
     1381 gtcgtcgtag cccatcggca attcataaac tcccgggcga ttgacgtgac cggataccga
     1441 ccagagcttt gtgccgccgc tcttctcggt gccgagcttc tgataagctt cgccgcccat
     1501 cttgataatg tcgggcaccg cggtaagcgt ctcgacgtta ttaacgacag tcggcgaagc
     1561 ataaagacca gagacggcag ggaagggagg cttcatgcgc ggatgaccac gcattccttc
     1621 aagcgagctg agcagtgcgg tctcttcacc gcagatgtaa gcacccgcgc cggtgtgcgt
     1681 gtaaatctcg catgagaagt ttccgccgag aatcctttca ccgagcaagc ccgccgcgcg
     1741 cgcttcatca agcgcgacgt ccatgatgtc gatcaggtat ttatactcac cgcgcgtgta
     1801 gatgtaattg gttttggctc cgagcgcgta agcggcgatc agcatgccct cgattagcat
     1861 gtgcggatcc cgttccatca gatagcgatc cttgaatgtg ccgggctcgg attcgtcagc
     1921 attgcagacg acgtacttgg gcttcggcga atccttggga acgaagctcc acttcattcc
     1981 cgtcggaaat ccggctccgc cacgaccacg cagcgcggac ttcttcactt cattaattac
     2041 atcgtcaggc gacattgaat caagaacctt cttgatcgct tcgtagccgc cgttttggcg
     2101 atacacttcc agcgaacgcg agttttcgag atgaactcgc cgaagctgaa gtggttcaca
     2161 tccgatggcg ccgatgaaca tagagactca gttttgcggc ttcgccgctc gatgtgcgga
     2221 aaggctccgc ctttccggaa caccttatta gttattagta agtcggaggc tccgcctccg
     2281 atcacgaggc aagcctcgcc gaccaaaatc aaaaacctcg tcggaaaggc agagcctttc
     2341 cgcacatcag gcggcagagc cgcgttacgg taacccgtcc agaatctgat cgaccttctc
     2401 cggcgttaga ttctcgtggt aatcaaagtt aatctgaaac attggggccg tcccgcacga
     2461 gccgagacat tcaacttccg acagagagaa gcgaccatca cccgtcgtct cgcccacctt
     2521 aatgccgagc ttcttttcgc aaagccgcgt gatcttgtca gagccaagca gtttgcacga
     2581 aagggttttg cacacctgaa tgtgatattt gccaatcggc ttgatgtgga tcatcgaata
     2641 gaaggttgcg acttcccaga tgtcggtgat ccgcaaattc agacgctgag ccagataaga
     2701 gaccccggga ggatctagat acccgcgctc tctttgcacg ataaacatca aaggcagaat
     2761 cgccgagcgc atcaccgggt acttcgcgag gtggcgatcg atctcagctt cgacctcagg
     2821 cgagaacgtc gcaacctcat ccggcatttg caccggttgc gaaagcggag cgatttgtgt
     2881 tagctgctga ctcatcgatc gatttctccc agcacaatat ccagcgatcc gataatcgcg
     2941 acgatatccg cgatcatcgc tccgtgcgac atgtgcggca gcgcagaaag attcacgaaa
     3001 ctgggcccgc ggaagtggac gcgggcgggc tttggtccac cggtggactt gatgtatacg
     3061 ccgagttcgc cttttgaagc ctcaatcggt tgatagactt cgccggcggg aacgtcgaat
     3121 ccttcggcga cgatcagaaa gtgatgaatc aaagcatcca tgtgcgtctt catcgcttcg
     3181 cgatcaggca agacaacttt cggggcgtcc gctttgaccg ggccaggtct cagacgcgac
     3241 aacgcttgct cgacgatctt gtgcgactct ttcatctcgc gcatgcgcac caggtagcga
     3301 gcccacacat cgcagtccgg ttccgtggga atctcaaaat catacttttc gtatccggtg
     3361 taaggattcg cgcggcgaat gtcgagttcg actgcgctgc cacgcaacga cgggccggac
     3421 aagccccaat caattgcatc ttcggcggaa atatagccaa caccctgcgt ccgcttctga
     3481 aaaattctat ttccagtgac cagcttgtca aaatcgtcga gcgctttcgg aaagccatcc
     3541 aggaactgtt tgactcgccg ctcgaaaccc gacggcaagt ccatcatcaa cccgccgatg
     3601 cgaaagtaag aaggcgtcag tctgctacct gacgcagctt cgatcaaatt catgatcttt
     3661 tcgcgttcgc gaaagcaata aaaaaaaacc gtcatcgcgc cgaggtccag cgcgtgtgtg
     3721 ccgagccaaa ccagatgcga agcgatgcgt tgcagttcgc acatcaacac gcggatcgtt
     3781 tgcgctcgtt ccgggatttc gatttgcaga agcttctcca ccgccatcac gtaagccagg
     3841 ttgttcccca aaggattcag gtaatccatg cgatcggtga tgacgatgcc ttgctgatac
     3901 ttcttgtatt cgaacagctt ctccatgccg gtgtggagat agccgatgtc gggagttgtc
     3961 tttaccacca tctcgccgtc aagcacgagt tcgagtcgca gcacgccgtg tgtcgaagga
     4021 tgctgcggtc ccatcgagat cgtcatctgc gtgtcgagcg gacgatcgat tacctcgaat
     4081 tgcgaaggaa tgtctacgct cgtgctcatt gctcaaatct gccacagagg cgcagagaca
     4141 cagggggtgt tagagaaaaa taagtaagct tcagaatctg gaaggtcagt gttcgagcag
     4201 tctcgttcat tccattttcc aatttctctg tgtctctgtg cctctgtggc gctatcattt
     4261 caggctgtac ggctcgtaac ctcgcaacgg aaaatctttt cgcagcgcgt gaccctgaca
     4321 atcatcagga agagaatgcg acgcagatcg ggatgtccgt cgaacacgac gccgaacaaa
     4381 tcgtaggttt cgcgctcgtg ccagtttgct gtgcgccaga taccattcac cgacggcacg
     4441 tgagcatcgt cttcgttgag cagaactttc aaacgcacgc gatgatgttt tgtcgttgag
     4501 aataaatgat agttgacttc aaagcgcggc tcttcttccg gcccgcgatc aaagccgcac
     4561 agatcggcga gaaagttgaa ctcgatcccc ggcgccgttt ttaagaactc gcacgcggca
     4621 gcaatgtgat cgcgcggaat ggtaatcgtt gtctcgccga gcgcatcgac aacctcggtt
     4681 atcgaatccg gatgctcacg ctgtaacgcc gccgcgatca gcgacggcgt tgtggttctc
     4741 tcggtctcac ttgactgatc gtctggctgg cccccttgca cgtttctctg ttcttccatc
     4801 taaccttcag ttccagggaa cttcaaagac ttctcgggtt caagattcca aattctagat
     4861 tcaaaggtcg cgcttcaaga agctcagaac gaccgccgct tctcgtgtgt tgaagcaatc
     4921 gtgtacgccc gcgaagtcgt agcgtcagtc tggcgcaaag tcgaaccatc agtcaccggc
     4981 agcgtgcctg gcgttaaggc ttcacgtgct tcctgctccg gagcgtccct gcggtcgcgg
     5041 atcgattctt tcatcacttt atcttgcaac atcatcaccg catggatcag catctctggc
     5101 cgtggcgggc aaccgggaat gtaaacatcg accggtacga tcttatccac gccctgaacg
     5161 attgcgtaat tgtcgaacac gccgcccgac gtcgcgcatg cgcccatcga gatcacccat
     5221 ttcggctcag gcatttgatc gtagatgcgc cggagcaccg gcgccatctt tcgcgagact
     5281 cgcccagaaa cgatcatcac atccgcttga cgcggtgaag cgcgaaaaac ctccgcgccg
     5341 aatcgagcaa ggtcgttacg ggatgaagtc gcattcatca tctcgatggc acagcaagcc
     5401 aaaccgaaag tcgccggcca caaagaagat ttgcgcgccc agttgatcag cgaatcaagc
     5461 cttgtcgtca agacttccgg cagcgcttcg gcgatgatgt tttcgagtcc catctgtctt
     5521 ggtttaaggt ttcaagtttc acgttcgcag gtcggaaagc ttaagcagct ttcttagtct
     5581 gcttctcgac cgtctccagc aaacgtgctt cggcttgcgc ttcgtgacgg gctcggtcac
     5641 tccagtcaaa cgcacccttc ttgatcacgt aaatcaaacc gaccgcgagc aaggcgatga
     5701 atacaagcat ctcaaaatag actagattcc gcaggccgta ctcgggactg gagagtctct
     5761 tgaacacgac cgcccacggc accagaaata tcacttcgat atcaaacagg atgaagatca
     5821 tcgcgatcag atagaacttg accgagaaac gttcgcgcgc agaccctact ggatcctttc
     5881 cgcactcgta aggcatcagc ttagtgcgcg tgcgtttgcg ttggccgacg aactgagaca
     5941 acgtgatgaa agtcaccgca aatcccgcc
//
LOCUS       DASZZE010000207         2310 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_120533, whole genome shotgun sequence.
ACCESSION   DASZZE010000207 DASZZE010000000
VERSION     DASZZE010000207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2310)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2310)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2310
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_120533"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1597
                     /locus_tag="VHD88_04110"
     CDS             <1..1597
                     /locus_tag="VHD88_04110"
                     /inference="COORDINATES: protein motif:HMM:NF014425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HVS21004.1"
                     /translation="EVAREMLARRDWITPTLGGLPWFEKPPMLYWLMMASYRIFGVSE
                     FSARLGPAICGLLTGFFVYWIGKNVGEPETGFDSSAEPNHNSDEQSQNALARWSTLIF
                     LSSAGVITFSRAASFDIVVTMTLTGALACFFVWHVRYRTRSDSDGLSANQSQARMPAL
                     LFAFYVFIGLSLVAKGLIGIVIPFGVIAGYFLARREWPQRSFLKSLIWGVPIVIAVAA
                     VWYGPMISRHGWKFIDQFIIQHHFARFATDKFHHPEPFYFYLPVLAGLALPWTIFLIG
                     SFISSRWWNWRGNAKLDRLPVFAFAWIVAPVAFFSFSESKLTAYILPVMPAVALLVGE
                     RVTCFLRADRGSKVLRLTGALLIIMACVGGWYSVHDLGVRVSCVGVAALSLFVVGAVA
                     LVRPQLRKALFVLIPLATLAAAAIAINCAALVIVRPESVRDLLSAANVRGYGAAPVVQ
                     LHTVERTAEFYASGRLSYGSDGEPIKLEAVVQVADAARRNGGVVLCLVPVQYESQLTS
                     YQKVQTEVIGNNARVSLLAVRAR"
     gene            complement(1617..>2310)
                     /locus_tag="VHD88_04115"
     CDS             complement(1617..>2310)
                     /locus_tag="VHD88_04115"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HVS21005.1"
                     /translation="VILLHRYGADRSWLLNLGVKLNETTNFTVLLPDLRGHGENPPVN
                     WTLFGSVDGDDATAAIDYLHTLKTTSGKPQVAGPIGMFGVELGAYAALDAAKRYPEVR
                     ALVLDSAPASPDDLIRAATTGHAAMNNAILQRLARWGMKVYSLGKYQDIPSCDEARSL
                     RNDERVLLLTGEGADPWNMSTLALAKCFANGSVEVKKDLPLTGFNLPASTGEQEEAYD
                     RPVIDFFDKALR"
BASE COUNT          411 a          649 c          684 g          566 t
ORIGIN      
        1 cgaagtcgcg cgcgagatgc ttgctcggcg cgattggatc acgccgacgc tcggtggcct
       61 gccgtggttt gaaaagccgc caatgcttta ctggctgatg atggcgagct atcgaatctt
      121 tggcgtcagc gagttttctg cgcgtctggg tccggccatc tgcggactgc tgactgggtt
      181 cttcgtttac tggattggta agaatgtcgg cgagcctgaa acaggtttcg attcaagtgc
      241 cgaaccgaac cataactccg atgagcaaag ccaaaacgcc ctggcccgat ggagcacatt
      301 gatcttcttg tccagcgccg gcgtgattac attttcacgc gcggccagct ttgacatcgt
      361 ggtgacgatg acgttgaccg gcgcgctcgc gtgcttcttt gtttggcacg ttcggtacag
      421 aacccggagc gatagcgacg ggctaagcgc caaccagtcg caagcgagga tgcccgcgct
      481 cctcttcgcc ttctacgttt tcatcggcct ttctctggtc gccaaaggcc tcatcggcat
      541 cgtcatccca ttcggcgtga ttgcgggata tttcctggcg cgtcgtgagt ggccgcaacg
      601 aagtttccta aagagtttga tttggggcgt accaatcgtg attgccgtcg ccgcagtttg
      661 gtatggaccg atgatttcgc gacacggttg gaagttcatc gatcaattca tcattcaaca
      721 tcacttcgcg cgctttgcga cagacaagtt tcaccatccc gagccgtttt acttttacct
      781 tcccgtgctc gcggggttgg ctttgccgtg gacgattttt cttattgggt ctttcatctc
      841 atcgcgttgg tggaactggc gcggaaacgc gaagctcgat cgtctgccgg tgttcgcatt
      901 cgcgtggatc gtcgcgcccg ttgctttctt ttcgttttcg gaatcgaaat tgacggctta
      961 catcttgccc gtgatgccgg ccgtggctct gctggtaggc gagcgagtga cttgctttct
     1021 gcgtgccgac cgcggcagca aagtgcttcg attgaccggc gcgcttttga ttatcatggc
     1081 ctgcgtcgga ggctggtatt cagtccacga cttgggtgtg cgagtctcgt gcgtcggcgt
     1141 cgcggcgctt tctctcttcg tcgtgggagc agtagcgctg gtgcgtccgc aacttcgcaa
     1201 agctctgttc gtgctgattc cgctcgccac tcttgccgca gcggcgattg cgatcaattg
     1261 cgcagcgctc gtcattgtgc ggcctgaatc cgtgcgcgac ttgttgagcg cggccaacgt
     1321 gcggggttac ggggctgcgc ctgtcgtcca gctacacaca gtcgaacgca cggcggaatt
     1381 ctacgcctct ggtcgtttga gttatggttc agacggcgaa ccaatcaagc tggaagccgt
     1441 cgtccaggtc gccgacgcag cacgtcgcaa cggtggcgtg gttctctgtc ttgtgccggt
     1501 gcagtacgaa tcgcagttga cgagttatca gaaggttcaa acggaagtga ttgggaacaa
     1561 cgcacgagtg tctttgttgg cggttcgcgc acggtgatgg cagggcgtga tcaattttat
     1621 cgtagcgcct tatcaaaaaa atcgatcacc gggcggtcat aggcttcctc ctgctcgccg
     1681 gtggaagcgg gaagattgaa gccggtcaat ggtaagtcct tcttcacttc gacggagccg
     1741 ttcgcgaagc acttcgcaag tgccagcgtt gacatgttcc aggggtctgc accttcgccg
     1801 gtaaggagca agacccgttc gtcatttctc agcgagcgag cttcgtcaca tgaaggaatg
     1861 tcctgatact ttccgagtga ataaactttc atgccccagc gcgccagccg ttgcaggatc
     1921 gcattgttca tcgccgcgtg tccggttgtc gcggcgcgga tgagatcgtc gggcgacgcg
     1981 ggcgccgaat caagcaccag cgcgcgcact tccgggtaac gcttcgccgc gtccagtgcc
     2041 gcatacgcgc ccaactctac gccgaacatt ccgatcgggc cggcgacttg cggttttcct
     2101 gaggtcgtct tcagcgtgtg cagataatca atcgccgcgg tcgcgtcgtc accatcgacg
     2161 ctcccaaaca gagtccagtt gaccggtgga ttttcgccgt ggccgcgcaa atccggcagc
     2221 agcacggtga agttcgtcgt ttcgtttaat ttgacgccga gattcaagag ccacgatcga
     2281 tcggcgccat agcgatgcag cagaatcacc
//
LOCUS       DASZZE010000208         1665 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_316365, whole genome shotgun sequence.
ACCESSION   DASZZE010000208 DASZZE010000000
VERSION     DASZZE010000208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1665)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1665)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1665
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_316365"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..257)
                     /locus_tag="VHD88_04120"
     CDS             complement(<1..257)
                     /locus_tag="VHD88_04120"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HVS21006.1"
                     /translation="MSESILIVDDERGIRETLSAVLRDEGFVPDAVTSGEECLKAIAR
                     RVYGCVLLDVWLPGIDGLETLRQMRDSNCDAAVVIISGHGN"
     gene            complement(309..>1665)
                     /locus_tag="VHD88_04125"
     CDS             complement(309..>1665)
                     /locus_tag="VHD88_04125"
                     /inference="COORDINATES: protein motif:HMM:NF013179.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HVS21007.1"
                     /translation="NLSHRVDTVGDDELALLAESFNQMTAELDQNRRHIESGATALQE
                     KNLALEERRNYIETVLDSLSTGVISLDRADCVTTINAAAASILKLSEPPPAWAKLSSI
                     LSNDDRLVLDRLIRRARRTGRAAEQSRLTRGSAGSPPMPVALTATALRGISSESRGVV
                     LVIEDLSELLAAQRAAAWSEVARRIAHEIKNPLTPIQLSAERIARNFHVRLNGVTEPG
                     GYGTARGSERVSPAQEAGLEAVARDGNAHGNGDNSALAFTEENREELTRVVEECTTSI
                     TREVAGLKALVDEFSRFARLPNPRLELGDLNEVIRQTALLYHERLDGVELRLELAEQL
                     PPAMFDTEQIKRVFVNLTDNALEALASVSDKRVVRIATRHDATREVLLAEVEDTGEGI
                     PGGDFKRLFQPYFSTKGRGTGLGLAIVERIIFEHRGRIYAEANSPRGARFVIELPVVS
                     A"
BASE COUNT          309 a          532 c          470 g          354 t
ORIGIN      
        1 atgttgccgt gtccggaaat gatcacgacc gcggcgtcgc aattcgaatc tcgcatctgc
       61 cgcagagttt cgaggccgtc aatccccggc aaccaaacgt cgagcagaac gcaaccgtac
      121 acgcggcgcg cgattgcctt cagacactct tcgccgctgg tcacggcatc ggggacgaaa
      181 ccttcgtcac gcagcacggc gctcagcgtt tcgcgtatgc cgcgctcgtc atcaacgatt
      241 aggattgatt cagacatgtg ttggagcgca ggcatcttgc ctgcggttcg ccggcatcct
      301 tgccggcgtt acgcgctcac tactggcagt tcaatcacga acctcgcgcc gcgcgggctg
      361 tttgcttccg cgtagatgcg tccgcgatgt tcaaagatga ttcgttcgac gatcgcgagg
      421 ccgaggcccg ttcctcggcc tttcgtagaa aagtatggtt gaaagagccg cttgaaatcg
      481 ccgccgggaa ttccttctcc ggtgtcctca acctcagcca gcaacacttc gcgcgttgcg
      541 tcgtgtctgg tcgcgattct tactacgcgc ttatccgaaa ctgaagccag cgcttccagc
      601 gcattgtcag tcaggttcac aaacacgcgt ttgatttgtt cggtatcaaa catcgccggc
      661 ggcagttgct ccgccaattc caatctcaac tcgaccccgt ccagacgctc atggtagagc
      721 agagccgttt ggcgaatgac ctcgtttaag tcgccgagtt ccaaacgcgg attcggcaag
      781 cgagcgaagc gcgagaattc atccaccaga gccttcaagc cggcgacctc gcgcgtgatc
      841 gacgtcgtgc actcctcgac cacccgcgtg agttcttcgc gattctcttc ggtgaaggcc
      901 agagctgagt tgtccccgtt gccatgcgcg ttaccgtctc gcgcaaccgc ttccagtcct
      961 gcttcctgcg cggggctaac ccgctcgcta ccgcgagcgg ttccgtaccc gcccggttcg
     1021 gtaacgccat tcaagcgcac gtgaaagttg cgggcgatcc gctcagccga aagctgaatc
     1081 ggcgtcagcg gattcttgat ctcatgcgcg attcgccgcg ctacttcact ccacgccgcg
     1141 gcgcgttgcg ctgccagcaa ttcggaaagg tcttcgatca ccagcacgac gccgcgactc
     1201 tcgctcgaga ttccgcgcag agcggttgct gttaaagcta ccggcattgg cgggctgccc
     1261 gccgaaccgc gagtcagacg gctctgctct gccgcgcgtc cggtgcgacg ggcgcgacga
     1321 atcaaacgat caagcacgag gcgatcgtcg ttgctcaaga tacttgacag cttggcccac
     1381 gccggcggcg gctcgctcag tttcagaatc gacgccgccg cggcgttgat ggtcgtcaca
     1441 cagtccgctc tgtcgagcga gatgacgccc gtcgataatg aatcaagcac ggtctcgata
     1501 tagttgcgtc gctcttcgag cgccagattc ttttcctgca aagcggtcgc gcccgactca
     1561 atgtggcggc ggttttgatc cagttccgcg gtcatttggt tgaacgattc agccagcaaa
     1621 gccagttcgt catcgccgac ggtgtccacc cggtgcgaga ggttg
//
LOCUS       DASZZE010000209         1632 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_39198, whole genome shotgun sequence.
ACCESSION   DASZZE010000209 DASZZE010000000
VERSION     DASZZE010000209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1632
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39198"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..587
                     /locus_tag="VHD88_04130"
     CDS             <1..587
                     /locus_tag="VHD88_04130"
                     /inference="COORDINATES: protein motif:HMM:NF014456.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HVS21008.1"
                     /translation="VTRVQRLAERAAKEGRHVVVAGSPDHPEMIGVVGYAPKNTFVVS
                     DASEVAALPNLHAPLVVSQTTLKLKTFLEVAEAVRAKADADPEIVNTICSATRDRQDA
                     ARGLAGLVDVFYIIGGKHSSNSIKLLAVCQEQCERSFLIETQDEIVPEDLKGVKRVGV
                     TAGASTPNWLIDQVIARLREIGNRTNGGRGTRVS"
     gene            799..>1632
                     /locus_tag="VHD88_04135"
     CDS             799..>1632
                     /locus_tag="VHD88_04135"
                     /inference="COORDINATES: protein motif:HMM:NF017745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF885 family protein"
                     /protein_id="HVS21009.1"
                     /translation="MRRLRVTCLLTFLICLTIAAPVNAKPRSFHELVDAYFEDYFKAN
                     PSQATSVGFHHYDRQLEDFSFAAHQRNRRKLLEYLAAFQATNPRVLSLLERDDREIMI
                     ASIHSIMLEEDRVHMWRKNPDGYSGAVTSSIFSIMKRNFAPAEERLRSVIEREKQIPR
                     ALQQARAVLHNPPKIYSDIAIEQLPGNIDFFQTTVPEAFKDVKDAALLADFKRSNDTA
                     IAALKDYQSWLQKDLLPRSHGTFAIGAENYRLKLLYDEMVDVPLPRLLKIGYAQLRKD
                     QR"
BASE COUNT          365 a          471 c          463 g          333 t
ORIGIN      
        1 tcgtcacgcg cgtgcagcgc ctggcggaac gcgccgcgaa ggaagggcgt cacgttgtcg
       61 tggccggcag ccctgatcac cctgagatga ttggcgttgt tggctacgct ccgaagaata
      121 cgttcgtcgt gagcgatgcc agcgaagtcg ccgcgctgcc gaatctccat gcaccactgg
      181 tcgtctcgca aacgacgctc aagctcaaaa cttttctgga agtcgccgaa gcggtgcgcg
      241 ccaaagccga cgccgatcct gaaatagtga acacgatctg ctcggccacg cgcgaccgtc
      301 aggatgccgc gcgcggactc gccgggttgg tagacgtttt ctacatcatc ggcgggaagc
      361 attcatcgaa cagcatcaag ctgctcgccg tttgccagga acagtgcgag cgcagctttc
      421 tgattgaaac ccaggacgag atcgttccgg aagatctcaa aggcgtcaaa cgcgtcggcg
      481 tcaccgccgg agcttccacg cccaactggc tgatcgatca agtcatcgcg cggctgcgcg
      541 agattggcaa tcgaactaac ggcggacgcg gaactcgcgt cagctagtcc gtcggaaagg
      601 cttttctctg tgcgaactct gtgatgctct gtgtctctgt ggtgaaatca agcggagaag
      661 cactcaccac agaggcacag agatcgcaca gagaaccaca gagattgttt ttctgaccga
      721 cttctggaat cacggtagat cggtcaatcc ggctggtcga caactctccc gctaattctg
      781 tggggcaaac acaaacctat gagacgctta cgtgtaactt gcttacttac cttcctgatc
      841 tgtctgacca ttgcggcgcc tgtcaatgcc aagccgcgtt cgtttcatga actagtcgac
      901 gcttactttg aagactattt caaggcgaat ccttcgcagg cgaccagcgt cggctttcat
      961 cattacgatc ggcaactgga agacttctcg ttcgccgcgc atcagcgcaa ccggcgcaag
     1021 ttgctggagt atctggcggc attccaggcg accaatccgc gcgtgctttc gctgctggaa
     1081 cgagacgatc gcgagatcat gatcgcgtcg attcacagca tcatgctcga agaagatcgc
     1141 gtgcatatgt ggcgtaagaa cccagatggt tactcgggcg ccgtcacgag cagcattttt
     1201 tcgatcatga agcggaactt cgcgccggcg gaagagcgac tgcgctcggt catcgagcga
     1261 gaaaagcaaa ttccgcgtgc gttgcagcaa gcgcgcgccg tgctgcacaa cccgccaaag
     1321 atttacagcg acatcgccat cgagcagttg ccgggcaata ttgatttctt tcaaaccacg
     1381 gtgcccgagg cgttcaagga cgtgaaggac gccgcgctgc tggcggattt caaacgcagc
     1441 aacgacactg ctatcgcggc gctcaaagat tatcagtcat ggctgcaaaa ggatctgctg
     1501 ccccgctcgc acggaacgtt tgccatcggg gcagagaact atcggctgaa gctcttgtac
     1561 gacgagatgg tcgacgtgcc gctgccgcgg cttttgaaaa tcggttacgc gcaattgcgc
     1621 aaagaccagc gc
//
LOCUS       DASZZE010000210         2624 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_297468, whole genome shotgun sequence.
ACCESSION   DASZZE010000210 DASZZE010000000
VERSION     DASZZE010000210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2624)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2624
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_297468"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..284)
                     /locus_tag="VHD88_04140"
     CDS             complement(<1..284)
                     /locus_tag="VHD88_04140"
                     /inference="COORDINATES: protein motif:HMM:NF012239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HVS21010.1"
                     /translation="MSKEKFDRSKPHVNIGTIGHVDHGKTTLTAAITKVLGKTNPKVK
                     FVAFDQIDKAPEEKARGITIATAHVEYETKNRHYAHVDCPGHADYVKNMIT"
     gene            complement(429..2531)
                     /gene="fusA"
                     /locus_tag="VHD88_04145"
     CDS             complement(429..2531)
                     /gene="fusA"
                     /locus_tag="VHD88_04145"
                     /inference="COORDINATES: protein motif:HMM:TIGR00484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HVS21011.1"
                     /translation="MPRQSPLSQTRNIGIMAHIDAGKTTTTERILFYTGITYKIGEVH
                     EGTAVMDWMEQEQERGITITSAATTCFWERNGVDHRINIIDTPGHVDFTMEVERSLRV
                     LDGAVAVFDGVAGVEPQSETVWRQADKYGVPRICFINKLDRAGASFQRSFDSIITRLG
                     ANPVAIQIPIGLEDQFKGVVDLIAMKGLIWNDESKGSEYETAEIPADLKDAAAAAREK
                     LIEAVATVDDHLMHKYVEGEKITEEEIRAALRKGTLALRIVPVVTGSAFKNKGVQTLL
                     DAVVDYLPSPLDIPPVEGVNPKNGHKEQRPADAGAPFSGLVFKIMADKHLGQLSFVRI
                     YSGTIKSGSYAYNSAKDTRERVGRLMRMHANKREDTEDASAGEIIAIGGMKQVTTGDT
                     ICDENKPIILEAIEFPAPVIRVAVEPKTRADQDKLGVALGRLAQEDPSFVVSTDQETG
                     QTIIAGMGELHLEIIVDRMKREFGVEANVGKPQVAYRETITQPAAGKEVFKKQTGGRG
                     QYAHVELEIEPAPGEGFVFENEIKGGSIPREFIKPTEQGIHDAMERGYLAGYDMVDIR
                     VRLIDGGFHEVDSDERSFHIAGSLAFQDALKKAKPVLLEPIMRIEVVTPEDYMGAVNG
                     DLNRRRGQIEKMEPRPGGVQVITAFVPLSEMFGYTTDLRSATQGRATSTMHFERYDQA
                     PKHIAEEVIAKVQGVARI"
BASE COUNT          497 a          795 c          676 g          656 t
ORIGIN      
        1 gtgatcatat tcttcacata atcagcgtgg cccggacagt cgacgtgcgc atagtgccgg
       61 ttcttggtct cgtactcgac gtgcgccgtc gcgatcgtga tcccgcgcgc tttctcttcc
      121 ggcgccttgt cgatctgatc gaaggccacg aacttcactt tcggattcgt cttgcctaag
      181 acttttgtta tcgccgccgt cagagtcgtc ttcccatgat ccacgtgtcc gatcgtcccg
      241 atgttcacgt gcggcttcga acgatcaaat ttctctttgc tcatctttgt atctcttcct
      301 cttgtaggag cgccgacatc ctgtcggcgg ttcgcgggca tccctgcccg catcttttac
      361 ccgctcgcta ccgcgagcgg ttctgtaccg tactcggcgg gcagtagccc gcctctaaac
      421 aacgagcctt aaattcttgc tacgccttga accttcgcga tcacttcttc cgcaatatgc
      481 ttcggcgctt gatcgtaacg ctcgaaatgc atcgttgaag ttgcacgccc ctgcgtagcg
      541 gaacgcaggt cagtcgtgta cccaaacatt tcggacaacg gcacaaacgc agtaataacc
      601 tgcactccgc caggacgcgg ttccatcttt tcaatctggc cgcggcgacg attcaggtcg
      661 ccattaactg cgcccatgta atcttccggc gttacgactt cgatccgcat gattggctca
      721 agcagtaccg gcttcgcctt cttcagagca tcctgaaatg ccagcgagcc ggcgatgtgg
      781 aacgaccgct catcagaatc gacttcatga aagccgccat cgatcagacg aactcttata
      841 tcaaccatgt catagccggc gaggtagccg cgctccatcg cgtcgtgaat cccttgttcc
      901 gttggcttga tgaactcgcg cggaattgag ccgcccttaa tctcgttctc gaaaacgaaa
      961 ccctcgcccg gcgcaggctc gatctccagc tcaacgtgcg cgtactgtcc gcgaccaccg
     1021 gtctgcttct tgaacacttc tttgccggcc gcgggctgcg tgatcgtttc gcgatatgcg
     1081 acctgcggct tgccgacatt agcttccacg ccaaactcgc gcttcatgcg atcgacaatg
     1141 atctcgaggt gcagctcgcc catgccggcg ataatcgtct gtccggtttc ttgatcggtc
     1201 gaaacaacaa acgaaggatc ctcctgagcg agacgtccga gcgccactcc aagtttgtcc
     1261 tgatcagcac gcgtctttgg ctcgaccgca acgcgaatga ccggcgcggg aaactcgatt
     1321 gcttccagaa tgatcggttt attttcgtca cagatcgtat cgcccgtggt cacttgcttc
     1381 attccgccta tggcaatgat ttcaccggcg ctcgcgtctt ccgtgtcttc gcgcttgttc
     1441 gcgtgcatgc gcataagacg accaacgcgt tccctcgtgt ctttcgctga gttgtaagcg
     1501 taggaaccac tcttgatcgt tccgctgtag atccgaacaa acgaaagctg gccgagatgc
     1561 ttgtcggcca tgatcttgaa taccaagccg ctgaacggag cgccagcatc agccgggcgc
     1621 tgctctttgt ggccgttctt tggattgaca ccttctaccg gcggaatgtc gagcggtgat
     1681 ggcaagtaat caaccaccgc atcgagaagc gtctgcactc ctttattctt gaaagccgag
     1741 ccggtgacca cgggtacgat tctgagcgcg agtgttccct tgcgcaaagc agcgcgaatc
     1801 tcttcttccg tgatcttttc accttcgacg tacttgtgca ttaagtgatc gtcaacagtg
     1861 gctacggctt cgatcagttt ctcgcgcgcg gccgcggctg cgtctttgag atcagcgggg
     1921 atttccgcgg tttcgtactc tgagcccttg ctttcatcgt tccagatcaa tcccttcatg
     1981 gcgatgagat cgacgacgcc tttgaactga tcttcgaggc cgatcggaat ttgaatcgca
     2041 acgggatttg caccgaggcg agtaatgatc gaatcaaacg agcgttggaa ggacgctccg
     2101 gcgcgatcga gcttgttaat aaaacaaatg cgagggacgc cgtatttgtc ggcttgacgc
     2161 cagacggttt cggattgggg ctcgactccg gccacaccat cgaatactgc aaccgcgccg
     2221 tccagcacgc gcaaactgcg ctcgacttcc atcgtgaaat cgacgtggcc cggcgtgtcg
     2281 ataatattga ttcgatgatc gaccccgttt cgttcccaga aacaagtagt ggcggcgctg
     2341 gtaatcgtga tgccgcgctc ctgttcctgc tccatccagt ccatcacggc ggtgccttcg
     2401 tgcacctcgc cgattttgta cgtaatcccg gtgtagaaca ggatccgttc cgtagtggta
     2461 gtcttcccgg catcgatgtg ggccatgatg ccgatattgc gagtttgact taacggtgac
     2521 tgcctgggca tttccgtctt tacttttttc cactggcgct ggggccccac ccccagcgcg
     2581 aacttacgct gatgcctcgc ggcggatccg cgtgtccgcc gctt
//
LOCUS       DASZZE010000211         4078 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_248736, whole genome shotgun sequence.
ACCESSION   DASZZE010000211 DASZZE010000000
VERSION     DASZZE010000211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4078)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4078)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4078
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_248736"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..283
                     /locus_tag="VHD88_04150"
     CDS             <1..283
                     /locus_tag="VHD88_04150"
                     /inference="COORDINATES: protein motif:HMM:NF013237.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019346 - transsulfuration [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HVS21012.1"
                     /translation="KGFGSMVSFDVGSLSAARAVLESAKLCTLAESLGGVETLICHPA
                     TMTHASVAPEVRERLGITEGLVRISVGIEDTDDIIADLDQALSAVTSDK"
     gene            353..1291
                     /locus_tag="VHD88_04155"
     CDS             353..1291
                     /locus_tag="VHD88_04155"
                     /inference="COORDINATES: protein motif:HMM:NF018884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein phosphatase 2C domain-containing
                     protein"
                     /protein_id="HVS21013.1"
                     /translation="MLVELHAKSDVGRVRRGNEDNYLLLDLATARTWSRLDGDENPED
                     MRQFTIGEQGLVLAVSDGMGGALAGDVAARMAIDSVRDVLTGNDSDHEACAPEASLVD
                     CLKHATMQANRAIHFKSLEDSRCSGMGATLTGAAIKDDKLDLVQVGDSRAYIMRGDQI
                     RLATKDQSLVQQLVDVGQISEEEAETHMFRNVILQALGAQNELTPATARIQIRRGDVL
                     LLCSDGLSGKLRNEDIRQIVSDSSQDLAAACAALVAAANERGGEDNITVVLARFTGEE
                     LRDPNQDRITVELSPLEEDKTLDEADVDSQAETVEN"
     gene            complement(1298..1789)
                     /locus_tag="VHD88_04160"
     CDS             complement(1298..1789)
                     /locus_tag="VHD88_04160"
                     /inference="COORDINATES: protein motif:HMM:NF014062.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HVS21014.1"
                     /translation="MENYIWIFWTILGAILIIAEVFTTGFVLLWFGMGALAAALAGLV
                     GVHSVTLQFLIFAIVSIALTAASRTIFVNYFSREKSGGDLKSGVESLPGKIGTVVSSS
                     RGALHEGAVKVFGSTWTAYPAEGEEPLEAGDRVAVERVQGASIYVRRVEPGRDWRGKE
                     LGS"
     gene            complement(1935..2852)
                     /locus_tag="VHD88_04165"
     CDS             complement(1935..2852)
                     /locus_tag="VHD88_04165"
                     /inference="COORDINATES: protein motif:HMM:NF013761.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HVS21015.1"
                     /translation="MLTRSALIYLSRQEGLKEFATRFSLFKKLTARFIAAENIEEAVA
                     AIRDLNARGCTASFDHLNESVTSTAETEAEVREYLDVLARIDDSGIDSNVSIKLTQFG
                     LEIDPELAYRNARRVAEDAVRRGNFVRIDMEGSTVTQATLDVFKRLRADFGLNDVGIV
                     VQSCLYRTMDDVRELLKIPARIRICKGAYNERPEVAYPDKKDVDDNYIRVMQLLLSSG
                     VYHGIATHDPKMIDATIDFAQREGIGKDAFEFQMLYGIRRDLQEQLARDGYRMRVYVP
                     YGKHWYPYFMRRLAERPANIWFVLKNLFK"
     gene            3014..3346
                     /locus_tag="VHD88_04170"
     CDS             3014..3346
                     /locus_tag="VHD88_04170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21016.1"
                     /translation="MRWKLLVIASIVAALVACGLWSTLAIGLFGTARDLARHDWLLLA
                     SAAVPLAVTAFAGVFIYRHTARRRKTQAVFTVLLTLFLSVGTYLVASQVFPDKLIIPR
                     TYEVRRAR"
     gene            complement(3348..3941)
                     /locus_tag="VHD88_04175"
     CDS             complement(3348..3941)
                     /locus_tag="VHD88_04175"
                     /inference="COORDINATES: protein motif:HMM:NF014069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HVS21017.1"
                     /translation="MPDRKDAWELLCEYTKGDSLRKHALAVETAMRACAKRYGDADAN
                     EDEWGLVGLLHDFDYEMFPAADQHPFTGANILCGRGYSERFIKAIMGHATYTGVPRDT
                     DMAKALFATDELCGFLVACALVRPSRSLDDMEVSSVKKKLKDKAFARSVSRDDIHQGV
                     AELGIELDQHIRFVIDALKPVQKEIGLGPKEEQANTA"
BASE COUNT          928 a         1160 c         1091 g          899 t
ORIGIN      
        1 aaaaggtttt ggcagcatgg tatcgtttga cgtcggctcg ctcagcgcag cgcgcgcagt
       61 actcgaatcg gcgaagcttt gcacgctggc agaaagtctc ggaggcgtcg aaacattgat
      121 ttgccatccg gcgacgatga cccacgcgtc ggtggcgccc gaagtacgcg aacgcctggg
      181 gatcacggaa ggactggtgc gaatctctgt gggtatcgag gataccgatg acatcatcgc
      241 cgatctggat caagcactaa gcgctgtgac aagtgacaag tgacaagtga cgagatagaa
      301 tcctgacgta ctcattggtt tctagttagg cccttactta ctgacctcaa ctatgctcgt
      361 tgagctacat gcaaaatcag acgttggccg cgtccgtcgc ggcaacgaag acaactatct
      421 tttgctcgat ctcgctactg cgcgaacgtg gagccgcctg gacggggatg agaatccaga
      481 ggacatgcgc caattcacga tcggagaaca aggtttagta ttggccgttt ctgatggcat
      541 gggcggggcg ctggccggag atgtggctgc acggatggcg atagattccg tgcgcgatgt
      601 cctgaccgga aacgattccg accacgaagc gtgcgcaccg gaggcgtcgc tcgtcgattg
      661 tctcaagcat gccacgatgc aggccaaccg cgcgattcat ttcaagagtc tggaagacag
      721 ccgttgtagc ggaatgggcg ccacgctcac cggcgccgcg atcaaagacg ataagctcga
      781 cctggtgcag gtcggcgaca gtcgcgcgta cattatgcgc ggcgatcaga ttcgtctcgc
      841 gaccaaagat caatctctgg tgcaacaact cgtggacgtt ggtcaaatca gcgaagagga
      901 agccgaaacg cacatgtttc gcaacgtgat cctgcaggcg ctcggcgcgc aaaacgaact
      961 cacaccggct acggctcgca ttcagattcg ccgcggcgac gtgttgttat tgtgcagcga
     1021 tggactctct ggaaaacttc gcaacgaaga tattcgccag attgtttcgg attccagcca
     1081 ggacctcgcc gcagcttgcg cagcgctggt ggccgcggca aatgaacgcg gtggcgagga
     1141 caacatcact gtcgtgctgg cgcgattcac cggtgaagaa ctgcgcgatc cgaatcagga
     1201 tcgaatcaca gtcgagctgt cacctcttga agaagacaaa actctcgacg aagctgacgt
     1261 cgattctcag gctgaaaccg tagagaacta ggtctcctta cgaacccaac tccttgcccc
     1321 gccaatcgcg tccaggctca acacgccgaa catagatcga ggcgccttgc acgcgttcga
     1381 ccgccacacg atcgccggct tccaaaggct cttcgccctc ggctggatac gcagtccacg
     1441 ttgagccaaa gactttcacg gcgccttcgt gcagtgctcc acggctggat gacacaacgg
     1501 ttccgatttt tcccggcaga gattcaactc ccgacttcag atcgccgcca ctcttctcgc
     1561 gcgaaaaata gttaacgaag attgtacgtg aagccgctgt cagcgcgatt gaaacgatcg
     1621 cgaaaatcag aaactgcaaa gtgacgctgt gcacgccgac cagaccggcc agcgccgcag
     1681 ccaacgcgcc catgccaaac cacagcagca cgaaacccgt agtgaagact tcggcgatga
     1741 tcagaattgc gccgagaatg gtccagaata tccagatgta gttttccatt cggtctaact
     1801 caatcagcca caaaaaggca caagatgcaa aagaaagcgc agcgtgcatt gacgcttgct
     1861 cgttgacgcc tcgtgtttcc gtttaatgct cagcaatttc tcttgcgcct tttgtgcctt
     1921 tttgtggcta acaactactt gaacaaattt ttcaaaacaa accaaatatt cgcgggtcgc
     1981 tcggccaggc gtcgcatgaa gtaaggatac cagtgtttgc cgtagggcac atacacgcgc
     2041 atccgatagc cgtcccgcgc gagctgttcc tgcaaatcgc gcctgatgcc gtagagcatc
     2101 tgaaactcga aagcatcttt gccgatacct tcgcgctgcg cgaagtcaat cgtagcgtct
     2161 atcattttcg gatcgtgcgt cgcaattccg tgataaacgc cgctcgacaa gagcaactgc
     2221 atcactcgga tatagttgtc atcgacgtct ttcttgtcgg gataagcaac ctcgggccgt
     2281 tcattgtaag cgcctttgca aattcgaata cgcgccggaa tcttgagcaa ctctcgcacg
     2341 tcgtccatcg tccgataaag acaagactgg acgacgatgc cgacatcatt caacccaaag
     2401 tccgcgcgca agcgcttgaa cacatcgagc gtcgcttgcg ttactgtcga tccttccatg
     2461 tcgatgcgca cgaagttgcc gcgccgcacg gcgtcttcag ccacacgccg agcgtttcgg
     2521 taagccagct caggatcgat ctccaagccg aactgcgtca gcttgatcga gacatttgaa
     2581 tcaatgccgc tgtcatcaat gcgcgcgagc acatccagat actcgcgcac ttcggcttcc
     2641 gtttccgcgg tgctggtaac cgattcgttc agatgatcga acgatgccgt gcagccgcgg
     2701 gcgttcaagt cgcgaatggc ggccacagct tcttcgatgt tctctgcggc gatgaatcgg
     2761 gcggtgagtt tcttgaaaag actaaaccgc gtcgcgaatt ccttgaggcc ttcctgacgt
     2821 gagaggtaaa tcagcgcgct tcgcgttagc attgtttaga gcagtgacaa gtgatgggtg
     2881 acaagaaaag ccactccgtg cttgtcgttt gcaacctgga atcttttatc attttgttgg
     2941 cagttaccac tgctgtgata tccttgcgca cgatttccct gaaaagactg acgctcttgt
     3001 aactcaagtt ccgatgcgct ggaaactgct cgtcatagca tctattgtcg ccgcgctcgt
     3061 cgcttgcggg ctgtggtcca cactcgccat tggcctgttc ggtactgcca gggacctcgc
     3121 gcgccacgat tggctcttac ttgccagtgc agccgttccg cttgcggtaa cggcgttcgc
     3181 cggcgttttc atttatcgtc atactgcacg cagacgaaaa actcaggcag tgtttaccgt
     3241 attgctgacc ctgtttcttt cagtaggaac ttatctcgtc gcttcacaag tcttcccgga
     3301 taaacttatt attccgcgca cctacgaagt gcgccgcgcc cgatgaacta agctgtgttc
     3361 gcctgctctt ccttcggccc caaaccaatc tctttctgca cgggcttcag agcatcgatc
     3421 acaaaccgaa tgtgctggtc gagttcgatt cccaactcgg cgacgccttg atgaatgtca
     3481 tcgcgactga ctgagcgagc aaacgctttg tccttcaatt tcttttttac tgaagacacc
     3541 tccatgtcat ccagacttcg cgacggacgg acgagagcgc aggcgacaag aaagccgcac
     3601 aactcgtcgg tcgcaaacag agccttcgcc atatcggtat cgcgcggaac gccggtgtaa
     3661 gtcgcgtggc ccatgatcgc tttgatgaag cgctcagaat agccgcggcc acacaagatg
     3721 ttcgcgccag tgaatggatg ctgatcggcc gcgggaaaca tctcgtaatc aaaatcgtga
     3781 agcagtccga ccagtcccca ttcgtcctcg ttagcatcgg cgtcgccata gcgtttcgcg
     3841 cacgcgcgca tcgcggtctc gacggccagc gcgtgcttgc gcaggctgtc gccctttgtg
     3901 tattcgcaca gcaattccca tgcgtctttg cgatcgggca tagtcagcaa acaagaaatg
     3961 tttcgttcgg agtgcaatca aaaaactagc acgagtggat gaggacggac aagcgtgcat
     4021 gtggagcgcg cgtcgtacgt ctcccttctc cctttgggag aagggctggg gaagaggg
//
LOCUS       DASZZE010000212         5874 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_135030, whole genome shotgun sequence.
ACCESSION   DASZZE010000212 DASZZE010000000
VERSION     DASZZE010000212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5874)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5874)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5874
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_135030"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1740
                     /locus_tag="VHD88_04180"
     CDS             <1..1740
                     /locus_tag="VHD88_04180"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HVS21018.1"
                     /translation="VSFITDLLPADLDRVEVLRGSGSSIYGTNAIGGVINLVPKTGAG
                     DSHFEFGFDGGSLALFRERLCGSGGLGKRSGFSFGVTRIDVRHGVDGNDEYGNTVAAG
                     RWQFNVRPSVTISANFYGTISNARLNDSPFALPAAFTSGTYPLAVEGSTFHADLNNPD
                     EGRRNRVLVGSVKLSHQVNDKLSYTIAYQHVGTQRRNYNGPRIDPKFAVFYPFGDFAF
                     LSVNNGATDTLDARANLRLGRHNLATAGFEYEHESIFQSSIPSFSSVNNTTDRQRTFA
                     VFAQDQIFLLDDRLQISLGARGQFFSVSAADRPGFLGTVTPEKSLTGDGAIVYFMRSS
                     GTKLRAHVGNGFRAPSLFERFGQGTFARLGFTRFGDSTLRAEQAISFDAGIDQRVARD
                     RARFGVTYFYTRLQRVIAFKSFIVDPLGVGRFSGFVNQPGGISRGVETYVEAAPWRGA
                     DWRASYTYTNSDRFVSSRGLQPEYVIPKHLFGMTLNQRYRSFLVSFDINRTGSYIAPV
                     FENDFPFRTAELTFPGYTKADLFGSYERAMTERITITLFAGAENLFDAKYFENGFRAP
                     GFMGRGGVNLRLR"
     gene            complement(1864..2229)
                     /locus_tag="VHD88_04185"
     CDS             complement(1864..2229)
                     /locus_tag="VHD88_04185"
                     /inference="COORDINATES: protein motif:HMM:NF025683.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4383 domain-containing protein"
                     /protein_id="HVS21019.1"
                     /translation="MAKTVCKLLGVIFVLVGIAGFAAPTLLGAHLTMPHNLVHIVSGL
                     IALYFGFAGSAGGARGFCLLFGLVYLLLGVVGWFMGTGPDHMFSIGTLLMLGKMDHII
                     HILLGVIFLAGGALGRSDG"
     gene            3066..4100
                     /locus_tag="VHD88_04190"
     CDS             3066..4100
                     /locus_tag="VHD88_04190"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HVS21020.1"
                     /translation="MSPPSDAVYPPGPEEVDEGDVIRVDTTLVTVPVSVLDRQGRFVP
                     NLQREDFSVFENGVEQSIAYFEPAEKPFTVALLLDTSASTHFHLSEIKEAAIAFAKQL
                     RPQDRVLIVSFNDEVLLLTEVTNDLNIIETVIEENANTGSSTRLYDAVDLTIRERLNK
                     IKGRKAIVLFTDGVDTSSQQASYQSTLHEVEELDALIYPIQYDTSDYLRAMQGAGAGS
                     VTVVTRRSGPFGTTTSQQTYNVPANGGAPLPGTTKADYDRADQYLHALADKTGGRLYQ
                     ANDTSQLAQAFTRIAEELRRQYSLGYYPKTDNPQGNERRQIRVKVQQSNLAVKARDSY
                     VKSSSPSPNK"
     gene            4385..5212
                     /locus_tag="VHD88_04195"
     CDS             4385..5212
                     /locus_tag="VHD88_04195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21021.1"
                     /translation="MTYEVSPGFTKTMQLILIDVAATERANNEAPGGFFKHTENSSVV
                     TQPAPQASRTLTNRDLMAVRQRRIASEQAYETRRKELGLPTVEETRRRQAEEGAVLRE
                     QFREESIAKAREETYWRERAGALRSEIVTVDAEINYLRARLGDLHRSPLFTQSFVTGV
                     FPFVPRIRIWPGPRMMNPGIYGASPAGAATRQPQALAATPWGAPRIAPPGFGFPFGVP
                     FAFPIRPFDYFDYSYERTGLVETLNGLLVTRAGLEARWRELEDEARSEQVPQVWLLP"
     gene            5333..>5874
                     /locus_tag="VHD88_04200"
     CDS             5333..>5874
                     /locus_tag="VHD88_04200"
                     /inference="COORDINATES: protein motif:HMM:NF014930.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21022.1"
                     /translation="MSWETIIGLEVHAQLSTQSKIFCGCSTHFGDEPNSNTCPVCLGL
                     PGALPVLNWRAVELGTRAALALGLHINERSIFARKNYFYPDLPKGYQISQYDQPFSAY
                     GVLEIMTAERDEAGHAHNWRPMTVNITRLHLEEDAGKNVHEGLPDVDRFSYIDLNRSG
                     TPLAEIVTEPDFRSSWEAYD"
BASE COUNT         1359 a         1643 c         1607 g         1265 t
ORIGIN      
        1 gtgtcgttca tcacggattt gttgccggcg gatctcgatc gcgtggaagt tctgcgcggc
       61 tcaggctctt cgatttacgg cacgaacgct attggcggag tcattaacct cgtgccgaaa
      121 accggggcag gtgattcgca tttcgagttt ggctttgacg gcggcagcct cgctctgttc
      181 cgtgaacggc tttgtggctc aggaggattg ggaaagcgat ccggatttag ttttggcgtg
      241 acgcgcatcg atgtgcgaca cggcgtcgat ggaaacgacg agtacggaaa tacagtcgcc
      301 gcagggcgat ggcaattcaa tgtccggcca tctgtaacga tcagcgctaa tttctacggc
      361 acgatctcga atgcgcgcct caacgacagc ccattcgcct tgccggccgc gtttacgagc
      421 ggaacgtatc cgctcgcggt cgaaggcagc acatttcacg cggacctcaa caaccctgac
      481 gaaggccggc gcaatcgagt gctggttggc tcggtgaaac tatctcatca agtcaacgac
      541 aaactgtcat acacgattgc ttatcagcac gtcggcactc agcgtcgcaa ctacaacggt
      601 ccacgcatcg atcccaagtt cgcggtattt tacccgtttg gtgatttcgc gtttttgagc
      661 gtcaacaacg gcgcgaccga cacgctggat gcgcgcgcca acttgcggct tggccgccac
      721 aatctggcga cggctggttt cgaatacgag cacgaatcga tctttcagtc atcgattccg
      781 tcgttcagtt cggttaacaa cacgaccgat cgccaaagaa cctttgcggt cttcgcacag
      841 gatcagatct ttctgctcga cgatcgtttg cagatttcgc tgggcgcgcg cggccagttc
      901 ttcagcgtca gcgccgcgga tcgacccgga ttcctaggca cagttacgcc ggagaaatca
      961 ctgaccggcg acggcgcgat tgtttacttc atgcgttcga gcggaacgaa gctgcgcgcg
     1021 catgtcggca atggttttcg cgcgccttcg cttttcgaga gattcggaca gggaactttt
     1081 gcgcgactgg gtttcacgcg atttggcgat tccaccctgc gcgcagagca ggcgatcagc
     1141 tttgacgccg gtatcgatca gcgagtcgcg cgtgatcgcg cgcggtttgg tgtgacgtat
     1201 ttctacactc gtttgcagcg cgtgattgcg ttcaagagct tcatcgtcga tccgctgggt
     1261 gtgggaaggt tcagcggctt cgtcaatcaa ccagggggaa tttcgcgtgg cgtcgaaacc
     1321 tacgtcgaag cagcgccatg gcgcggcgct gactggcgcg cgtcttatac ctacacgaac
     1381 agcgatcgtt tcgtttcctc gcgaggtctg caacccgaat acgtaattcc aaaacatctg
     1441 ttcggaatga ctttgaatca acgctaccgc tcgttccttg tcagcttcga cataaatcgc
     1501 actggctcct atatcgcgcc ggtatttgaa aacgactttc cgtttcggac cgccgagctg
     1561 actttccccg gctatacaaa ggcggatttg ttcggaagtt acgaacgcgc aatgactgag
     1621 cgcattacga tcacattgtt tgccggtgct gagaatcttt tcgatgcgaa gtatttcgag
     1681 aacggttttc gcgcgccggg gttcatgggc cgcggcggcg tcaatctgcg gttgagatga
     1741 tgactcggcg aacaatagta gagaagcgcg agcgttgcgg gggtctgcat tgatcaacgc
     1801 ccgcgcagca cacgcgcttc atgcttactt gtactcgcgg caaaaaggac gaagagtctt
     1861 cggtcagccg tcgcttcttc ccaacgctcc gcccgcgagg aagataacac ccaacaggat
     1921 atggatgatg tggtccatct tgccgagcat caacagcgtg ccgatgctga acatgtgatc
     1981 cgggcccgtg cccatgaacc agccgaccac acccagcaaa agataaacca ggccgaacag
     2041 cagacagaat ccacgtgcgc cgcctgccga tccggcaaaa ccgaagtaca acgcaatcaa
     2101 gccggaaacg atatgcacca ggttgtgcgg catcgtcagg tgcgcgccaa gcaaagtcgg
     2161 cgcggcaaat ccggcaattc cgaccagcac aaaaataaca ccaagaagtt tgcaaacagt
     2221 ctttgccatg atctttcttt ctcctgtgaa actgtcaaag cctcatgcgg acaaacgcct
     2281 ttcaaagtgc gctgccgccg tcgagttgcg aggggtgttc tggaaacggc gcggattgta
     2341 tatcaaacgg ccaagctaat gacaagattt ttcttaaagg tttcgggtcc atacccgttg
     2401 gcttacttga tctttgcagc taatccggga gtataatgcg ccccaagcta agaaacaccg
     2461 tcaagggggt agcaactatg aagttgtgcg tcgccttctt gcttctgacc accttcagtt
     2521 cgggagcagt tactcagggc caaactgcgc ctcggagaac aaaccagaat gcggttagca
     2581 agccacgaag tgaaacaata agaatatgtc agggcgttcc cattcccgaa gggtacgtca
     2641 tcattgctta tatgacctca tctgcttgcc ctcacggcgc gtacgtgctc aagaaacagg
     2701 atgagtatga aagttcgtta gctgtgaacg gcagttcgcg acaggcaact gaggagtcgc
     2761 agccaccgag aacttctgct gcacaacctc cgaaaaactc cggacagtca gcaagaaagt
     2821 cgccacaact cgcacgaagg tctgcccaac aagtaagaca gtctgcggaa ccagataaga
     2881 cgctatcaca gccagcggga gattctgcac aggccgcagg agcgtctgca tctatttccc
     2941 ggccgcgacg ggttggcacg acccaatcgg cggaaggacc tcctacattg atcggcagcg
     3001 aacctgcccc agcgccgcgc ccgccgacct tggccaacgc aggcaacgcc ccagcggcct
     3061 cacaggtgag tccaccttct gatgctgttt atccgccggg gccggaagaa gttgacgaag
     3121 gcgacgtgat ccgcgtggac accacgctcg tgacagttcc cgtcagcgtc ctggatcggc
     3181 aggggcgttt cgttcccaat ctccagcgcg aagactttag cgtctttgaa aatggggtcg
     3241 agcaatcaat cgcctatttc gagccggcag aaaaaccttt tacggtagcg cttcttctgg
     3301 acacttcggc ttcgacgcat tttcatctgt cggagatcaa agaagccgcg atcgctttcg
     3361 ctaaacaact gcgtccgcag gatcgcgtgc tcatcgtcag cttcaacgat gaagtgctcc
     3421 tcctgaccga agtaacaaac gacctgaaca tcatcgaaac cgtgatcgaa gagaacgcga
     3481 acacgggcag ttcaacgcgc ctttacgatg ctgtcgatct cacgattagg gagcggctca
     3541 acaagatcaa agggcgcaaa gcgattgtgc tcttcaccga cggcgtcgat acctcgagcc
     3601 aacaggcaag ctatcaaagc actctgcacg aagtggaaga gctggatgcg ctcatctatc
     3661 caattcagta cgacaccagc gattacctgc gcgcgatgca aggggccggc gccggcagcg
     3721 tgacagtcgt taccagaagg agcgggccgt ttggcacgac tacctcgcaa cagacttata
     3781 atgttcctgc gaacggcggc gcccccttac cgggcacaac caaggctgat tacgaccgcg
     3841 ccgatcaata cctgcacgcc ctggccgaca aaactggcgg gcggctctac caggccaacg
     3901 acacgtcgca actggcgcag gcgttcacga gaattgccga agagctgcgc cgccaataca
     3961 gccttgggta ctaccccaag accgacaacc cgcaaggaaa cgagcgccgc cagatcaggg
     4021 ttaaggtgca gcaatcaaac cttgccgtga aagcgcgtga cagctacgtg aaatcttctt
     4081 ccccgagtcc gaacaagtag atatacgtgt cttacagctt acgaggaata tttgaacgtt
     4141 ttggccgagt accatactct gccaaattcc taaccaaaaa aatgacgagg aaagggaggg
     4201 tcctactatg ttgaagaatt gttcgcctaa aaacgggtca cacctgcgaa gggcattgtc
     4261 caacttagca atggctgttg ggctcctttt agtgcttgcg atcacggcca gcgcctatac
     4321 gcttgtcttt cgcgatggtc gacgaatgga aataccttcg gagtttacac tgacgagaac
     4381 gacgttgact tacgaagttt cgcctggctt taccaagaca atgcaactga tcttgattga
     4441 tgtcgccgct actgaacgcg ccaacaatga agcacccggc ggtttcttca aacatacaga
     4501 aaattcatcc gtcgtcactc agcctgcgcc tcaggcgagc aggactttga ctaatcgtga
     4561 cctgatggcg gttcgtcagc ggcgtatcgc gagcgagcaa gcttatgaga cgcgccggaa
     4621 agaattaggt ctgcctacgg tcgaagaaac gcgcagacgt caggcagagg agggggcggt
     4681 tttgcgtgag cagttccgcg aggaatctat agctaaggcg cgcgaagaaa cctactggcg
     4741 agaacgtgcc ggcgcgctgc gcagcgaaat cgttactgta gatgccgaga tcaattatct
     4801 gcgcgcacgg ctcggcgatc ttcatcgatc tccgctattc acgcaaagtt tcgtcactgg
     4861 tgtttttccg ttcgtgccac gaataagaat ttggcccggt cctcgcatga tgaatccagg
     4921 aatctacggc gcatctccag caggcgcagc gacgcggcag ccgcaggctc tagctgcgac
     4981 gccctggggc gcgcccagaa tcgcgccgcc cggcttcggc tttccctttg gagttccgtt
     5041 tgcgtttcca attcgaccgt ttgattactt cgactattct tacgagcgaa ctggattggt
     5101 agaaacattg aacggtctgc tggtgacgcg cgcgggactg gaagcacgct ggcgagagtt
     5161 ggaagatgaa gcacgcagcg agcaggttcc gcaagtgtgg cttttgccgt aaacccgttc
     5221 tgagttcgac gcgcggagtc cggggttcgg atttttactt gatccatagt cttgaatatc
     5281 ttgaaaactg cgagccctga agtcgaaact ccgaactccg aacttgaaac ttatgtcctg
     5341 ggaaaccatc atcggcctcg aagtccacgc gcaacttagc actcagtcaa aaatcttttg
     5401 cgggtgctcg acgcattttg gcgacgaacc gaactcaaac acgtgtccgg tgtgcctcgg
     5461 tttgccgggc gcgcttccag ttttgaattg gcgagcagtg gaactcggta cgcgcgcggc
     5521 gctggcgctc ggtcttcaca tcaacgagcg ctcgatcttt gcacgcaaga attatttcta
     5581 tcctgacttg ccgaagggct atcaaatctc gcaatacgat cagccgtttt cagcctacgg
     5641 cgttttggaa atcatgacgg cggaacgcga cgaagcgggc cacgcgcata attggcgacc
     5701 gatgactgtg aacatcacac gcttgcatct ggaagaggac gccggcaaaa acgttcacga
     5761 aggcttgcct gacgtcgatc ggttttctta catcgatctg aatcgctcgg gcacgccttt
     5821 ggcggaaatt gtcactgagc ctgacttccg ttcttcctgg gaagcctatg acta
//
LOCUS       DASZZE010000213         4321 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_23340, whole genome shotgun sequence.
ACCESSION   DASZZE010000213 DASZZE010000000
VERSION     DASZZE010000213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4321)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4321)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4321
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23340"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..621)
                     /locus_tag="VHD88_04205"
     CDS             complement(<1..621)
                     /locus_tag="VHD88_04205"
                     /inference="COORDINATES: protein motif:HMM:NF012993.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrilase-related carbon-nitrogen hydrolase"
                     /protein_id="HVS21023.1"
                     /translation="MARTVKCGLIQASNAAPTDAPIEEIKRLNIEKHLGMIEDAAKQG
                     VQILCMQEVFTTPYFCAEQQTRWYDAVEKIPEGPTTKLMQETAKKHNMVIIVPIYEEE
                     IAGIYYNTAAVIDADGKYVGKYRKHHIPHVNPGFWEKFYFKPGNLGYPAFDTAYARVG
                     VYICYDRHFPEGARVLGLNGAEIVFNPSATVAGLSEYLWKLEQPSSR"
     gene            complement(665..2209)
                     /locus_tag="VHD88_04210"
     CDS             complement(665..2209)
                     /locus_tag="VHD88_04210"
                     /inference="COORDINATES: protein motif:HMM:NF014218.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS1 family nucleobase:cation symporter-1"
                     /protein_id="HVS21024.1"
                     /translation="MSPSDNSETIQHSDGRVELRAEVAQQISASPLYNSDLAPVPVSK
                     RNWTTYNYAALWISMAHCIPTYMLSSGLISAGMNWWQALITILLGNTIVLIPILLNSH
                     PGTKYGIPFPVFARAAFGTYGSNLPALMRAIVACGWFGIQAWIGGEALHTLFTAIIPR
                     WPSLLGGPIGGHTPTEWISFLLFWGLNIYIIYRGMDLLRKVENWAAPFVLVMTSLLLA
                     WAIWKAHGLGYLLTQQSKFHNLREFWPIFIPSLTGMIGFWATLSLNMPDFTRFGHSQR
                     EQAVGQVVALPTTMTVFATMGVMITSAAVVIYPTMKADELWDPMKLVGQFHQVVVVAI
                     SMFTVVVATLAVNIAANVVSPANDFANAFPKLISFRTGGLITGIIGILMQPWRLLADP
                     SGYIFTWLVGYSGGLGSIAGVLIVDYWIVRQKRFVLGDLYRKQGAYTYNGGWNWRAVL
                     ATLIGCALAWSGPILARFGVVVPLLQMLYDYAWFVGFGAAAITHLALMKLASPKSGAT
                     IEVETT"
     gene            complement(2235..2711)
                     /locus_tag="VHD88_04215"
     CDS             complement(2235..2711)
                     /locus_tag="VHD88_04215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21025.1"
                     /translation="MKRESFSPAQAAEVATAFAKHHVDYMFIGKSGAILLGYPGTTQD
                     VDVFPRKDEENGKRIVAALQDLGFLINEALEQEILRGKDFVQIKDGPFDIDLVFAPDG
                     IENYDEAKSRMDTSSGYPVVNISDIIASKRAARRPRDAVELPLLQAFREFYEKNRQ"
     gene            complement(2701..2940)
                     /locus_tag="VHD88_04220"
     CDS             complement(2701..2940)
                     /locus_tag="VHD88_04220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21026.1"
                     /translation="MKRDWLEDFRKQCERNLQRSVADRMRYGFNYVYKPVLDDAPWRS
                     FDSMEEYRRWCRENLPKYLGYGELDDLQRQVLDET"
     gene            complement(2964..>4321)
                     /locus_tag="VHD88_04225"
     CDS             complement(2964..>4321)
                     /locus_tag="VHD88_04225"
                     /inference="COORDINATES: protein motif:HMM:NF012664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21027.1"
                     /translation="LRYTATVGMMPIKNRDGETEARIFFMAYTLDEGGNRARRPLTFS
                     FNGGPGSASVWLHLGAIGPRRVPMNPDGTMPAPPYQLVDNEYTWLNQTDLVFIDPVGT
                     GYSRAVRPDLAAKFFGLTGDIESVGEFIRMYLTRYERWTSPLFLAGESYGTTRASALS
                     GYLIGRGIAFNGIVLISTIMNFETTDFASGNDLPYVMFLPSYAATAWYHKKLPPDLQS
                     RSVQEIVAEVEQWAANDYTLALEKGDRLTPQERQDAIAKLSRYTGLSSQFIDNANLRV
                     SLNLFRKELLRSEKRSIGRLDARFKGFDASYASDSPDFDASEAAIRPPYTSTFNQYVR
                     SELGYKSDLEYYILGGGITSPWNWNTNNGYVDTSVALRNALARDPYLKIYVAMGYYDM
                     ATPYFAVQYTLHHISLDPVLLKNFSTGYYEAGHMMYIDEKQLGRLRSDVGKFIEEAQR
                     K"
BASE COUNT         1004 a         1209 c         1139 g          969 t
ORIGIN      
        1 tctgctcgag ggctgttcca acttccaaag atattccgag agtccggcga cggtggccga
       61 cggattgaaa acgatctcgg cgccattcaa tcccaggacg cgtgcgccct cgggaaagtg
      121 ccggtcatag cagatgtaaa ctccaacacg cgcgtaggct gtatcgaatg ccggataacc
      181 aaggttgcca ggcttgaaat agaacttctc ccagaagccg ggattgacgt gcggaatgtg
      241 atgcttgcga tacttgccga cgtatttgcc atcggcatca atcacggcgg cggtgttgta
      301 gtagatgccg gcgatctcct cttcgtaaat cgggacgatg atcaccatgt tgtgtttctt
      361 cgccgtttcc tgcatcagct tcgtagtagg cccttcggga atcttctcaa cggcatcgta
      421 ccaacgcgtt tgctgctcgg cgcaaaagta aggcgtcgtg aaaacttcct gcatacagag
      481 aatctgcacc ccctgcttag ccgcatcttc gatcatgccc aagtgctttt cgatattaag
      541 ccgcttgatc tcttcgatcg gcgcatccgt cggcgcggcg ttgcttgctt gaatcaatcc
      601 gcatttaact gttcgtgcca tatggtctcc aaagtctcaa gtctcaattc tcaagtctca
      661 agtctcaagt tgtttcgact tcgatagtcg ctccactttt cggtgaagcg agcttcatca
      721 gcgcaaggtg agtgatcgcc gcggcgccaa agcccacaaa ccaggcgtaa tcatagagca
      781 tttgcagcag cggcactacc acgccgaatc gcgcgaggat tggaccgctc caggcgaggg
      841 cgcagccgat gagcgttgcc aaaaccgcac gccagttcca accgccgttg tatgtatagg
      901 ctccctgttt gcgatagagg tctccgagga caaatctttt ctgtcgcacg atccaataat
      961 ccacgatcaa gactccggca atcgatccga gtccgccgga ataacccaca agccacgtaa
     1021 agatgtagcc cgaaggatcg gcgagcaagc gccacggctg catcagaatg ccgatgatgc
     1081 cggtgatcaa gccgccggtg cggaatgaga ttagtttcgg aaaagcattc gcgaaatcgt
     1141 tggccggcga gactacattc gccgcgatgt tgacggcaag cgtagcgaca acgactgtga
     1201 acatcgaaat cgcgacgact acaacctggt gaaactgtcc gacgagtttc atcgggtccc
     1261 acaattcgtc ggctttcatt gtagggtaga tgacgacagc ggcagaagtg atcataacgc
     1321 ccatagtcgc gaacacagtc atcgttgttg gcaaggcaac gacttgtccg actgcttgtt
     1381 cacgttgact gtgaccaaag cgcgtgaagt ccggcatgtt taagctgagc gtcgcccaga
     1441 atccaatcat ccccgtcaaa gacggaatga agattggcca gaactctctc aggttgtgaa
     1501 acttgctttg ctgcgtcaga agataaccga gcccatgcgc tttccaaatg gcccacgcga
     1561 gcaaaagcga agtcatgact agcacaaaag gcgcggccca gttctcaact ttgcgaagca
     1621 gatccatgcc gcgatagatg atgtagatat tcaatcccca gaacagtaga aacgaaatcc
     1681 attccgtcgg cgtgtgtccg ccgattggtc cgccgagcag cgacggccat cgtggaataa
     1741 tcgcggtgaa taaagtgtgc agcgcttcgc cgccaatcca cgcctgaatc ccgaaccagc
     1801 cgcaagcgac gatcgcgcgc atcagcgccg gaagattcga tccataagtt ccgaaagcag
     1861 cgcgcgcaaa aacagggaag ggaattccgt actttgttcc cggatgcgag ttgagcagga
     1921 tcggaatcag cacaatcgtg ttgccgagca ggatcgtgat cagcgcctgc caccaattca
     1981 tgcccgcgct gatcaatcct gacgaaagca tgtaggtcgg aatgcagtgc gccatgctga
     2041 tccacagcgc ggcgtagttg tacgtcgtcc agttgcgttt gcttacaggg acaggcgcga
     2101 ggtcagagtt gtaaagcgga cttgcactaa tctgctgcgc gacttccgcg cgcaactcga
     2161 cgcgaccgtc agagtgttgg atggtttcag aattatcgct aggtgacact gggctcttta
     2221 cactctacgg gccttcactg acgattcttc tcgtaaaact cgcgaaacgc ttggaggaga
     2281 ggaagctcaa cggcgtctct gggtcgtctg gcggcgcgtt tgctcgcgat gatgtcgcta
     2341 atgtttacca cagggtagcc gctggatgtg tccatgcgac tctttgcttc gtcatagttc
     2401 tcgatgccgt cgggcgcgaa gactaagtca atgtcgaaag gtccatcctt aatttgaaca
     2461 aaatccttac cgcgaagaat ttcttgttcg agagcttcgt tgatcaagaa ccctaagtcc
     2521 tgcaaggctg cgacaatccg cttcccgttc tcttcgtctt ttcgcggaaa cacgtcgacg
     2581 tcttgcgtcg ttcccggata cccgagcaag atcgcgccgc tcttgccgat gaacatgtaa
     2641 tcaacatgat gcttcgcgaa agctgtcgcg acttctgccg cctgtgcggg actgaagctc
     2701 tcacgtttca tctaacacct gccgctgcaa gtcatccagt tctccatagc caagatactt
     2761 tggaagattc tctctgcacc accgacgata ttcttccatc gaatcgaaag accgccaagg
     2821 agcatcgtca agtactggct tgtaaacgta attgaatccg tagcgcatgc gatcggctac
     2881 gctgcgctgc aaattgcgct cgcattgttt acggaaatct tcaagccagt cgcgtttcat
     2941 aagacagtta acacgattca cacttacttc cgctgtgctt cctcgatgaa cttccctacg
     3001 tcgcttcgca accggcccaa ctgcttctcg tcgatgtaca tcatgtggcc ggcttcgtaa
     3061 taaccagtcg agaaattctt cagcagaacg ggatccagac tgatgtgatg cagcgtgtac
     3121 tggactgcga agtacggcgt agccatgtca tagtagccca tcgccacgta aatcttgaga
     3181 tacggatcac gcgccagcgc attgcgcagt gcgacgctgg tgtccacata gccattgttc
     3241 gtattccagt tccacggcga agtgatcccg ccgcctagaa tgtagtattc gaggtcgctc
     3301 ttgtatccaa gttctgatcg cacatactgg ttgaacgtcg aagtgtacgg cggacggatc
     3361 gcagcttcgc ttgcgtcgaa gtcggggctg tcactggcgt aactcgcgtc aaatcctttg
     3421 aagcgagcgt cgagccggcc aatcgatcgc ttttccgatc gcagcaactc cttgcgaaac
     3481 agattcagcg atacgcgcaa gttcgcattg tcgatgaact gagaagagag acccgtgtag
     3541 cgcgacaact tcgcgattgc gtcctgtcgc tcctgcggtg ttaaccgatc acctttttcc
     3601 agcgccagag tgtaatcgtt cgccgcccat tgctcgactt cggcgacgat ctcttgcaca
     3661 gagcgcgact gaagatccgg cggcagtttc ttgtgatacc aggccgtggc ggcgtaagac
     3721 ggcagaaaca tcacgtaagg caaatcgttt cccgacgcga agtccgtcgt ctcgaaattc
     3781 atgatcgtcg aaatcagcac gatgccgttg aaagcgatgc cccggccaat caagtaacca
     3841 gacaacgccg aagcgcgcgt cgtgccgtaa ctctcgcccg cgagaaacaa cggagaagtc
     3901 cagcgctcgt acctcgtgag gtacatgcgt atgaattcac ccaccgattc gatgtctccg
     3961 gttaagccaa aaaactttgc cgcgagatca ggcctgacgg cgcggctgta gcccgtgccc
     4021 accggatcga tgaaaaccaa gtccgtttga ttcagccagg tgtattcgtt gtcaaccagt
     4081 tgatacggtg gcgccggcat cgtgccgtcg ggattcatgg gcacacgcct tggtccgatc
     4141 gcccccagat gaagccagac ggaagccgat cccggtccgc cgttgaaaga aaacgtcaat
     4201 gggcgacgtg cgcgatttcc accttcgtcc aatgtgtaag ccatgaaaaa gattcgcgcc
     4261 tcggtttcgc cgtcgcgatt cttgatcggc atcatgccga cagtggcggt gtaacgaaga
     4321 g
//
LOCUS       DASZZE010000214         2681 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_103752, whole genome shotgun sequence.
ACCESSION   DASZZE010000214 DASZZE010000000
VERSION     DASZZE010000214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2681
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_103752"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1050)
                     /locus_tag="VHD88_04230"
     CDS             complement(<1..1050)
                     /locus_tag="VHD88_04230"
                     /inference="COORDINATES: protein motif:HMM:NF013506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S49 family peptidase"
                     /protein_id="HVS21028.1"
                     /translation="MSTTRKVILIISGIVLALVLVCVVGIAIIVSLVRGNRPSIRDNS
                     VLALKVSGPLPDYVPDDPFRRLFGGQPQSLSSLLTQFRKAKTDKRITAVLLDIDASDT
                     GWAKAEEIRGAIEDFRASGKPIYAYMEIGMNKDYYIATACDKVYLPPPGELFITGLAA
                     DVMFFRGSLDKLGIYPDVYQIGKYKSAGDTFTQKQMTDAHREFINSLVEDLYDRYVEG
                     IAKGRSKSVDDMKGLIDNAPYTAAQAKDNGLIDGALYHDDVEKELKKRLGYKDSDELH
                     IAKGSDYRQISQESLGLNKGEKIAVVYAAGDITSGKSQFGGDGEETIGSDSLVKTLDE
                     VRDDKRIKAVVLRVDS"
     gene            complement(1222..2331)
                     /gene="mnmA"
                     /locus_tag="VHD88_04235"
     CDS             complement(1222..2331)
                     /gene="mnmA"
                     /locus_tag="VHD88_04235"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR00420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HVS21029.1"
                     /translation="MKIAVAMSGGVDSSAAAAILKEQGHELVGFTMQLWNQRRGLSVD
                     ENGEPLPSRCCSLDDVYDARRVAEELGFPFYVLNLEQEFERDVVQPFVTSYLNGETPI
                     PCVACNSRLKFASLDRLAASLGCEKVATGHYARVEFDAATNRYRLLRGRDPQKDQSYF
                     LWELTQDQLSRSLFPLGEMSKPDVREAARRSELAVAEKAESQEICFVPDGDYAGFIDR
                     YLESEEQSDRLPGSGEIVNTSGVAIGEHAGIHRYTIGQRRGIGIADSQPLYVVGIDSA
                     KNRIVVGRDNELLSDEFTAAGVNWIALDDPSEPVRAEVRVRYRHIAAPATITPLPDAR
                     VLVAFDEPQRAITPGQATVFYRGDDVVGGGWIVKK"
     gene            2485..>2681
                     /locus_tag="VHD88_04240"
     CDS             2485..>2681
                     /locus_tag="VHD88_04240"
                     /inference="COORDINATES: protein motif:HMM:NF019348.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HVS21030.1"
                     /translation="MPERAIEEYRIADEPYYLPVDHEIDLFEAAHAAHLPVILKGPTG
                     CGKTRFVEHMAWRLERPLITVA"
BASE COUNT          575 a          781 c          731 g          594 t
ORIGIN      
        1 actgtcaacg cgcagcacca cggccttaat gcgtttgtcg tcgcgaactt cgtccagggt
       61 tttcaccagc gaatccgatc caatcgtttc ttcgccgtcg ccaccgaact gagacttgcc
      121 tgacgtgatg tcgccggcgg cataaacgac ggcgatcttt tcgcctttgt tcagacccag
      181 agactcctgc gatatctgtc gatagtcgga acccttcgcg atgtgcaatt cgtcgctgtc
      241 tttgtaaccg agccgcttct tcaattcttt ctcgacatca tcgtggtaca aagcgccatc
      301 gatgagcccg ttgtctttag cctgggccgc agtgtaaggc gcgttatcga tcaaaccttt
      361 catgtcatca actgacttcg agcgcccttt ggcgattcct tcgacgtagc ggtcgtacaa
      421 atcttcgacc agtgaattaa tgaattcgcg atgagcatcg gtcatctgct tctgcgtgaa
      481 cgtatcgccg gcgctcttgt actttccgat ttgatagacg tccggataga ttccgagttt
      541 gtcgagcgag ccgcggaaaa acatcacatc agccgcgagt ccggtaatga aaagttcacc
      601 cggcggcggt aggtaaacct tgtcgcaggc cgtggcaatg taatagtcct tgttcatgcc
      661 tatttccatg taggcgtaga tgggtttgcc cgacgcgcga aaatcttcaa tcgcgccgcg
      721 aatctcttcc gccttggccc agcccgtatc cgacgcgtcg atgtccagca gcaccgcggt
      781 gatgcgcttg tccgttttcg ctttgcggaa ctgcgtgagc agactactca gcgactgtgg
      841 ctggccgccg aagagccggc gaaacggatc gtcgggaacg taatccggca gcgggccgga
      901 gactttcaag gcgagcacgc tgttgtcgcg aatggacggc cgattgccgc gcaccagcga
      961 tacgatgatc gcgatgccga cgacacagac cagcacgagc gcgagcacga tgccggagat
     1021 gatgagaatg actttgcgag ttgtggacat tgccatggcg agtttttacc tgctgttatt
     1081 caaagatttt ggccgattgt gagtacgatg agggcgagga aaaggtttac gggagatcgt
     1141 agtagtaggg gcggacctgt gtgtccgccc ttgattgttg ttgcggcgca agagggcgaa
     1201 cacgcaggtc cgcccctaca tttatttctt tacaatccag ccaccaccaa cgacatcatc
     1261 gccgcgataa aacacggtcg cctggcccgg cgtgattgcg cgctgtggct cgtcgaacgc
     1321 gaccaacacg cgagcatcgg gcagtggcgt gatcgttgcc ggcgcggcaa tatggcgata
     1381 gcgcacgcgc acttcggcgc gcacaggctc ggacggatca tcgagcgcaa tccagttgac
     1441 gccggcggct gtgaattcgt cgctcaacaa ttcgttatca cgaccgacta cgatgcggtt
     1501 cttcgctgaa tcaattccca caacgtacag cggctgcgag tcagcgatgc cgataccgcg
     1561 ccgttggccg atcgtgtagc gatgaatgcc ggcgtgctct ccgattgcga cgccgctcgt
     1621 gttcacgatc tcgccggagc ccggcaaacg atcgctttgt tcttctgatt caagatagcg
     1681 atcgatgaac ccggcatagt cgccatcggg aacgaaacag atttcctgcg actctgcttt
     1741 ctccgcaact gcgagttcgc tgcgacgcgc tgcctcgcgc acatcaggtt ttgacatttc
     1801 gcccagcgga aacagtgagc gggaaagctg atcctgcgtc agttcccaca aaaagtaaga
     1861 ctgatccttt tgcggatcgc gcccgcgcag cagtcgataa cgattcgtcg ctgcatcgaa
     1921 ttcgacgcga gcgtaatgtc cggtggcaac cttctcgcaa ccaagactcg ccgccagacg
     1981 atcgagcgaa gcaaatttca gacgactgtt gcaggcgacg cacggaatcg gtgtctcgcc
     2041 attcagatag ctcgtcacaa atggctgcac gacatcgcgc tcaaactctt gctcaagatt
     2101 caaaacgtaa aatggaaagc caagctcctc cgcgacccgt cgcgcatcgt aaacgtcatc
     2161 gagcgagcaa cagcgtgaag gcaacggctc gccgttctca tcgacgctga ggccgcgccg
     2221 ctgattccac aactgcatcg taaagccgac cagttcgtgg ccctgctctt tcaaaatcgc
     2281 cgcggctgcg gacgaatcca cgccgccaga cattgctact gctatcttca tcaggcttct
     2341 agtttcaggt ttcaagttgc aagtttcaag tcggcgcacg gcgttcacat caaactggct
     2401 aagtttgctg gcctttctcc gcgaatgcta agattcggtt tcaccaactt gaaagctgaa
     2461 acttgaaacc tgaaaccaag gcctatgcct gaacgcgcca tcgaagaata tcgcatcgcc
     2521 gacgagccgt attatctgcc cgtcgatcac gagatcgatt tgttcgaagc cgcgcacgcc
     2581 gcgcacctgc cggtgatttt gaaaggcccg accgggtgcg gcaagacgcg ctttgtcgaa
     2641 cacatggcgt ggcggcttga gcgaccgctg atcaccgtcg c
//
LOCUS       DASZZE010000215         2154 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_316499, whole genome shotgun sequence.
ACCESSION   DASZZE010000215 DASZZE010000000
VERSION     DASZZE010000215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2154)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2154)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2154
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_316499"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..392)
                     /locus_tag="VHD88_04245"
     CDS             complement(<1..392)
                     /locus_tag="VHD88_04245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21031.1"
                     /translation="MSKENKKADNSVVDLEHARVRLRSRAGKASPESLVSDLQTVRAL
                     LDQGLTSEARSRLVSLLAQARNEPALLAQARCALSIAWEMQGHYGESLDAVAMYEPPE
                     ARAKLDPTLGAMLRVQIALANNYNGDHP"
     gene            complement(605..1771)
                     /locus_tag="VHD88_04250"
     CDS             complement(605..1771)
                     /locus_tag="VHD88_04250"
                     /inference="COORDINATES: protein motif:HMM:NF021507.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiester glycosidase family protein"
                     /protein_id="HVS21032.1"
                     /translation="MRHNFLIGLLACVCLAATIPASSQTASQSSALKSEFIAPGIEHL
                     QIIRGYKSEKEATGPWFINMLRIDLMKARLRMVHAMDEAVGLETVSSMATRYGALAAV
                     NSGYFRTTGTYRGDSVGVEVLHGKLLSEPNNVRAAVGLIDRSGTQEVIFGHVKFDGQV
                     IAGANAKHSIDGINRPRGDNELIVFTPEFHRTTLTDPNALELIVRHDRIVERRDLKGS
                     STIPADGYVISVAGAARDWADKNLRVGARVKLNLNLSPAETEQANLWKQAGNIIGGGP
                     QLIKNGLIEITNAAEKILPSFVSDGHPRTAIAKLKSGQILLVTVDGRQPGESIGMSLT
                     MLADLLLEFGAAEAINLDGGGSTTMVIKNKPVNKPSDATGERPVSDAILIFPRP"
BASE COUNT          467 a          603 c          598 g          486 t
ORIGIN      
        1 ttaggatgat cgccgttgta attgttagcc agcgcgatct gaacacgcag catcgcgccc
       61 agagttggat cgagcttggc gcgcgcttcc ggaggctcgt acatcgcaac ggcgtcgagg
      121 gattcgccat aatggccctg catttcccaa gcgatcgaca gcgcgcatcg cgcctgggcc
      181 agcagcgccg gttcgtttcg tgcttgtgct aatagtgaga cgagacggga tcgcgcctcg
      241 ctcgtcagac cctgatcgag caaagcgcgg acggtttgca gatcgctgac cagagattca
      301 ggcgaagcct tgccggcgcg cgaacgcaga cgcacgcgag cgtgctccag atcgactact
      361 gagttatccg cttttttatt ctctttgctc aaaggcgcaa gttcccgtga agagcggatc
      421 gcctaatgcc acgcgatggt gatagccgaa aatacaaata aaagcgcaat agcatcggct
      481 tttcacctcc gaagttaacc aggggcagga tacgacgggc tcgagagtcg cccactccgt
      541 tcggactcaa acgaaccgaa aataccatag tccgggctct ccgtcacgca cttccttcca
      601 gctttcacgg tctcggaaag atgaggatgg cgtcgctgac aggacgttcg ccggtggcat
      661 ctgaaggctt attgacgggc ttgttcttga tcaccatcgt ggtcgaaccc ccgccgtcaa
      721 gattgatagc ctcggccgcg ccgaactcga gcaggagatc cgcgagcatg gtaagcgaca
      781 tgccgatgct ttctccgggt tggcggccat caactgtcac tagcagtatc tgtcctgatt
      841 tcagtttggc gatcgcggtt cgaggatggc cgtcgctaac aaagctcggc agaatctttt
      901 cagcggcgtt agtgatttcg attagtccat tcttgatcaa ctgagggccg ccgccaatta
      961 tgttgccggc ctgcttccag agattcgcct gctctgtttc agccggagac aagttgagat
     1021 tcagtttgac tctcgcaccg acacgcagat tcttatctgc ccaatcacgc gcagcgccgg
     1081 ctaccgaaat gacgtagcca tccgcgggaa tcgtgctgct gcctttcaga tcgcgccgct
     1141 caacgattcg gtcatggcga acgatcaatt ccagcgcatt gggatcagtc agagtggtgc
     1201 gatgaaactc aggcgtgaac acgatcagct cgttgtcgcc gcgcgggcga ttgattccgt
     1261 cgatcgagtg ctttgcattc gcgcctgcga ttacttgccc gtcgaacttt acgtgtccga
     1321 agatcacttc ctgcgttccg cttctgtcga ttagaccgac tgcggcgcga acgttgttag
     1381 gctcgctcaa aagttttccg tgtagtactt cgacgccgac tgagtcgccg cgataggttc
     1441 cggtcgtgcg aaagtagcca ctgtttaccg ccgccaacgc cccgtatcga gtagccatcg
     1501 aactcactgt ttccaatccc acggcttcgt ccattgcgtg aaccatccgc agccgcgctt
     1561 tcataagatc gatgcgcagc atattgatga accacgggcc ggttgcttcc ttctctgatt
     1621 tgtagccgcg aatgatttgt aggtgctcga ttccgggagc gatgaattcg gatttaagcg
     1681 ccgaggattg gctcgccgtt tgcgacgagg caggaatggt tgcggcaagg caaacgcacg
     1741 caagcagacc aatcagaaag ttgtgtctca cgaagcggca gtaagtggaa cagcttcgta
     1801 ggagctgaat gtttatagct tccgatctga taatcatgac acgctcgctc ggaacgcgat
     1861 attagcgcac attgcgttcc gagcgggaaa caaaactaga atgggcgagc gggctttata
     1921 aaaaattttc tcctagcgga gcaagaaaag cttcgcagaa ttcggaagcg ccgcaacccc
     1981 gggcaagaat cgcaggcgcg cggtccattc cttgacaccc ctgggaccgg cccttatcat
     2041 gcttgtttcc gcgcagtccg gaatcgccgt ctaatgtatg ttcgagtctc tttccgacaa
     2101 actgaagcgg actctgaaga atctgcgcgg cgaaggcgtc ctgacgaagg aaca
//
LOCUS       DASZZE010000216         2506 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_187279, whole genome shotgun sequence.
ACCESSION   DASZZE010000216 DASZZE010000000
VERSION     DASZZE010000216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2506
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187279"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..394
                     /locus_tag="VHD88_04255"
     CDS             <1..394
                     /locus_tag="VHD88_04255"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HVS21033.1"
                     /translation="LERGWGRIINVASIAGKTGAPYISAYAASKHGVLGLTRSLALEV
                     AANGVTVNAICPGYVDTEMTSRGIENIVAKTGTSAEDALAAIKKMSPQNRLVTAEEVA
                     AVALLLASEEGRSINGQAINVDGGTVLF"
     gene            516..2330
                     /gene="aspS"
                     /locus_tag="VHD88_04260"
     CDS             516..2330
                     /gene="aspS"
                     /locus_tag="VHD88_04260"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: protein motif:HMM:NF001750.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HVS21034.1"
                     /translation="MIENLGNLERTHSCGVLRKENVGARVTLMGWCARRRDFGPLTFI
                     DLRDRDGITQIVVNQEKAADAHAKAKEVRGEFVLAVTGEVVMRDADARNPKLATGEVE
                     VQASELVILNDARTLPFQLDAPASEALASEDLRLKYRYLDLRRPQLQANLRLRHRVLT
                     EIRSYMTEQGFTEIETPVLIKSTPEGARDYIVPARVQPGKFFALPQSPQLFKQLCMIA
                     GLDKYFQIARCFRDEDLRADRQPEFTQLDVEMSFATIEQIYTLIEGLYARVFRVIGVE
                     LATPFPRFSFAEAMRRWGSDKPDLRIAGMELQDLSERLSETTFAPYASVLAAGGQIKG
                     IVVRGGASLSRKTLDELQEFAKRYGASALAWIKLGDDLSSSLLKALGDDLVAQLAQAA
                     RAQNGDAVLIVAGKPKVVAASLGALRNEVARRENLVPTNTYAPLWVTEFPMFEYHEDD
                     GRYYSMHHPFTSPLDEDLPLLERAVEGGETELLAKIRTKAYDPVINGVELASGSIRIH
                     RQDVQRLVFKALGMTTEEARSRFGFFLDALEYGTPPHGGIAPGIDRLMMVLAGTDNMR
                     DVIAFPKTASAADLMIEAPGEVDPKQLEELHLTIVKDN"
BASE COUNT          541 a          701 c          756 g          508 t
ORIGIN      
        1 gctcgaacgc ggttggggtc gcatcatcaa tgtcgcttca atcgccggca agacaggtgc
       61 gccgtacatc tcggcatacg ccgcgtcaaa acacggcgtg ctcggtctga cgcgatcgct
      121 ggcattggaa gtcgccgcta atggcgtcac cgttaacgcg atttgtccgg gatacgtcga
      181 tactgaaatg acttcgcgcg gcatcgaaaa catcgtggcg aaaaccggca catcggccga
      241 agatgcgctg gccgcgatta agaagatgag tccgcagaac cgtctggtaa ccgcggaaga
      301 agtcgcagca gtcgcgttat tactagcttc tgaagagggg cgaagtatca acggtcaggc
      361 gataaatgtg gatgggggaa cggtgctgtt ctgatttgga gtgcggcggc aagcacagcg
      421 cgacgccgct ttggatcaat cggtcgaaaa attgagaacg cgcatccaaa gcgccgtcgc
      481 cgctctgctc tgccggcgca ctccaaaata attctatgat cgaaaatctc ggcaatcttg
      541 aacgcacaca ctcgtgcggt gtgctgcgca aagagaacgt tggcgcgcgc gtgacgctga
      601 tgggttggtg cgcgcggcgg cgcgactttg gcccgctcac gttcatcgat ctccgagatc
      661 gcgacgggat tactcagatc gtcgtgaatc aggagaaagc tgcggacgct catgcaaaag
      721 ccaaagaagt tcgcggcgaa ttcgtactgg cagtcaccgg cgaggttgtc atgcgcgatg
      781 cagacgcacg caatcccaaa cttgctaccg gcgaggttga agttcaggcc agcgagcttg
      841 taattctcaa cgacgcacgc acacttcctt ttcaactcga cgccccggcg tctgaggcat
      901 tggcaagcga agacctgcgt ttgaagtatc gctatctcga tctgcgccgg ccgcagttgc
      961 aggcgaatct gcgtctgcgc catcgcgtgc tcaccgaaat tcgcagttac atgaccgagc
     1021 agggattcac cgagatcgaa acgccggtct tgatcaaatc gaccccggaa ggcgcgcgcg
     1081 attacatcgt gcccgcgcgc gtgcagccgg ggaaattttt cgcgctgccg caatcgccgc
     1141 aacttttcaa acagttgtgc atgattgcgg gtctcgacaa atactttcag atcgctcgct
     1201 gctttcgcga cgaagacctg cgcgccgatc gccagcctga gttcacgcag ctcgacgtcg
     1261 aaatgagctt tgccacaatc gagcagattt acactttgat cgaggggttg tacgcgcgcg
     1321 tgtttcgggt catcggcgtt gaattggcaa cgccatttcc gcgcttcagt tttgccgaag
     1381 cgatgcggcg ttggggttca gacaagcccg acttgcgcat tgcaggaatg gaactgcagg
     1441 acctttccga aagattgtca gaaacgacgt tcgcgcctta cgcgtccgtg ttggcggcag
     1501 gcggacagat caaagggatc gtcgtgcgcg gcggcgcgtc gctctcgcga aagacgctgg
     1561 acgagttgca ggaattcgcc aaacgttatg gcgcttctgc gctggcctgg atcaagttgg
     1621 gtgacgacct ctcgtcgtcg ttgttgaaag cgttgggcga cgatctggtt gcgcaattgg
     1681 cccaggcggc acgtgcgcaa aatggcgacg ccgtgctgat tgtcgccggc aaaccgaaag
     1741 tcgtcgcggc cagtctcggc gcgctcagaa acgaagtcgc gcggcgcgag aatcttgttc
     1801 cgacaaacac gtacgcgccg ctgtgggtca ccgagtttcc gatgttcgaa tatcacgaag
     1861 acgatggccg ctactattca atgcatcatc cgttcacttc gccgcttgac gaagacttgc
     1921 cgctgctcga gcgcgcggtc gaaggcggcg agactgagtt gctcgcaaag atccgcacca
     1981 aggcgtatga cccggttatc aacggcgtcg agttggcgag cggctcgatt agaattcatc
     2041 ggcaggacgt gcaacgtctg gtcttcaaag ctctgggcat gacgacggaa gaagcgcgtt
     2101 cgcgttttgg attttttctc gacgcgctcg aatatggcac gccgccacac ggcggcatcg
     2161 cgccaggcat cgatcgcttg atgatggtgc tggcaggcac ggacaacatg cgcgacgtga
     2221 tcgcttttcc gaagacggcg tcggcggccg atctgatgat cgaggcaccc ggcgaagtcg
     2281 atccgaaaca gttggaagag ctgcatctga cgatcgtcaa ggacaactag caatactagc
     2341 gttgcggcta tgccgcacga tgtgcggaaa ggcttcgcct ttccgagcga ggcctccaaa
     2401 atcccttcgg ggctacgccc taaaatggcg aggcgtagcc tcactcttga gtctaaccac
     2461 tcctcacgga aaggcagagc ctttccgcac atcaggtggc aaagcc
//
LOCUS       DASZZE010000217         1501 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_248890, whole genome shotgun sequence.
ACCESSION   DASZZE010000217 DASZZE010000000
VERSION     DASZZE010000217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1501)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1501)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1501
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_248890"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..822)
                     /gene="pilM"
                     /locus_tag="VHD88_04265"
     CDS             complement(<1..822)
                     /gene="pilM"
                     /locus_tag="VHD88_04265"
                     /inference="COORDINATES: protein motif:HMM:NF022554.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein PilM"
                     /protein_id="HVS21035.1"
                     /translation="MAFNPLDKILRPRLPACAVGFEKDAIAVVQLERGRGGFVVKRAA
                     SVTLPADLVRPGFDENNIGDPADLAAALSDLLTSAGLLRQRKWSVTLPEATTRSAVLA
                     LDGNPGSRRELEEVLEWKIERTFGAPLSEMRVNREQLPPNAQNQVRYLATAVRRSVLE
                     EYESVFRALGWQAGLIMPRHAGEEQWLRHGSQGDGLLLTAHDEGFTAVLMRGGRALTL
                     RSVFCEPAECDDELHRVLLFYRERSGGNGESAVDRLLIVGDSLDKQRVADVASETL"
     gene            complement(834..1313)
                     /locus_tag="VHD88_04270"
     CDS             complement(834..1313)
                     /locus_tag="VHD88_04270"
                     /inference="COORDINATES: protein motif:HMM:TIGR02532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HVS21036.1"
                     /translation="MERSTVSGKNSEQKAVSSKQKAPRRSSLPIPYCLLPTGFTLLEL
                     MIVISIIIILVSVALPQFQKTIMHARETVLKDDLHKMREMIDQYAADKGKLPQSLDDL
                     VTAGYMRELPKDPITDNKDWVIATGDDPYSTQGGTGVTDVHSASGDVSSEGTPYSEW"
     gene            complement(1288..>1501)
                     /locus_tag="VHD88_04275"
     CDS             complement(1288..>1501)
                     /locus_tag="VHD88_04275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21037.1"
                     /translation="MQAATEDSTIPKTKVYLRQIPIDPMTGKADWVFRSCYDSADSTS
                     WGGENIFDVHSKSDGKALNGEKYSEW"
BASE COUNT          304 a          471 c          411 g          315 t
ORIGIN      
        1 gagagtttcg ctcgcgacgt cggccacgcg ctgtttgtcc agactgtcgc ccacgatcag
       61 caaacgatcg accgcgcttt cgccgttgcc tcccgagcgt tcgcgataaa aaagcagtac
      121 gcgatgcaac tcgtcgtcgc actcggctgg ttcgcagaag accgagcgca acgtcaacgc
      181 gcgtccgccc cgcatcaaaa ccgccgtgaa cccttcatcg tgcgcggtca acagcaatcc
      241 gtcgccctgg ctgccgtgac gcagccactg ctcttcgccg gcgtgccgcg gcataatcaa
      301 acctgcctgc catcccagag cgcggaacac cgactcgtat tcttccagca ctgaacgtcg
      361 cacggcggtc gccagatagc gcacctggtt ctgggcgttg ggcgggagct gctcgcggtt
      421 aacgcgcatt tcggataagg gcgcgccaaa agtccgctcg attttccact cgagtacttc
      481 ttcaagttcg cggcgcgagc cgggatttcc gtccagcgcc agcaccgccg agcgcgtggt
      541 tgcttccggc agcgtcaccg accacttgcg ctggcgcaaa aggcccgcgc tcgtcagcag
      601 atcagaaagc gcggcggcca gatcagcggg atcgccaata ttgttttcat caaatcccgg
      661 gcgcaccaga tcagcaggca gggtaaccga agccgcgcgc ttgacgacaa acccgccgcg
      721 cccacgctcg agttgcacca ccgcgatcgc gtccttttca aagccgacag cgcaagcggg
      781 caagcgaggc cttagaattt tgtcgagtgg attgaaagcc attggaaaat gattcaccac
      841 tcgctatacg gagtgccttc gctcgagacg tcgcccgaag cgctgtgcac gtcggtgact
      901 cccgtgccgc cctgggtcga gtatggatcg tcgccggtag caatcaccca gtccttatta
      961 tcggtaatcg gatccttcgg aagctcgcgc atgtagccgg cggtaaccag atcgtcgagc
     1021 gattgtggca gcttgccctt gtccgcggcg tattgatcga tcatttcacg cattttgtgc
     1081 aggtcatcct tcagcaccgt ctcgcgcgca tgcatgatcg tcttttgaaa ctgcggcagc
     1141 gctaccgaca ccagaatgat gatgatcgag atgacgatca tcagctcgag gagagtaaaa
     1201 ccagtaggca gtaggcagta gggaataggc agcgaacttc ttcgaggtgc cttctgctta
     1261 ctgcttactg ccttctgctc actgttctta ccactcactg tacttctctc cattcagggc
     1321 tttgccgtct gactttgagt gcacatcgaa gatgttttcg ccgccccacg aggtcgaatc
     1381 cgcagagtca taacacgagc ggaacaccca atcggctttg ccggtcatcg gatcgattgg
     1441 aatctgacgc aaatagacct tcgtcttcgg aattgtcgag tcttccgtcg cagcctgcat
     1501 c
//
LOCUS       DASZZE010000218         4215 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_121078, whole genome shotgun sequence.
ACCESSION   DASZZE010000218 DASZZE010000000
VERSION     DASZZE010000218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4215)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4215)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4215
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121078"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1128)
                     /locus_tag="VHD88_04280"
     CDS             complement(<1..1128)
                     /locus_tag="VHD88_04280"
                     /inference="COORDINATES: protein motif:HMM:NF014852.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-N-acetylhexosaminidase"
                     /protein_id="HVS21038.1"
                     /translation="MRTTLTRTLILRTAILGAFALACVAANAQTPNTQIIPAPKQLTV
                     SEGKFEIGLDTRMALADGQSAEDRFAALDFIDDVKQTAGVTVRLGGNSARREILIGRI
                     DLPRIQQALKRAAVDSIQQLNDEGYVLSVGLHEVVVAGKTTTGTFCGLQTLKQLVRGE
                     AANAFIPGMKIVDWPTMRWRAVSDDISRGPVPTVDYIKRQIRTEAFFKLNMHSFYMEH
                     TFASGSHPLIGPAGGSLTPDEIRELVAYARRYHVELVPEQQTFGHLHKALRLEKYAEL
                     AETPYGDVLSPQQPGSYKLIADWYKELNELFPGQFFHIGEDETFELGEGQSKEEAQAK
                     GVGAIYFEHLNRVRDALKPYNRRLMFWGDIALHHPDLIGNIP"
     gene            1318..2352
                     /locus_tag="VHD88_04285"
     CDS             1318..2352
                     /locus_tag="VHD88_04285"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013539.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HVS21039.1"
                     /translation="MSLMLQEITEQPESLARTIQEERSKIERLGKSLKQRNIDLIVLV
                     ARGSSDNAALFGRYLLEIMTGIPVSLSAPSVHTLYHAKLNLKRALVIGVSQSGEGEDI
                     NRVLENARVCGAFTIGITNEPASSMVKLVEETLLMHGGRERSVAATKTFTGQMLLFYM
                     LSSALAKDGRAIDYEPIPDLAERALEQTPAIVELVQRYVFMENCVVVGRGLAYANAYE
                     FALKLMETCYVVAERFSSADFLHGPVAMIERHFPVILFAPPGVMLAGTKDLISRLHEL
                     RADTLAITGDIDAAAMCSRSIIMPREIDEFLAPIPYIIPAQLFAALLAEAKGLDPDAP
                     RSLSKVTRTL"
     gene            2674..4032
                     /locus_tag="VHD88_04290"
     CDS             2674..4032
                     /locus_tag="VHD88_04290"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HVS21040.1"
                     /translation="MKDIAQSGEVVTNNHSQGTLLRVLGVGFGLAVTIGGTIGMGILR
                     TPGEVAAQLPTPKLFIGVWILGGVYALLGTISVAELGAMIPRSGGWYVFVHRAMGNYP
                     GFVVGWSDWLSTCGTLAVIAMVVGEYTAVLAPRLAGRDKPVALAVVLLFAALQWRGIR
                     WGSFTQNLTSLLKTVIFAAIAIAAFTFAGKLAAGTPSLVPHRFALFTALIIALQGVLY
                     TYDGWYGVIYFGEEVRNPKRDVVRSMFGGVLLVIAIYLVVNLAYVYVLPMSQLAGENF
                     AAGAVAQKIFGAYGDKTIRVLAILSLLSTINAYTLTAPRILYAMSCDELFARRANRVN
                     RGGTPTVTLLLSTIAAVLFIVSGTFNAVLAALAFFFVANYAMAYISVIVLRRREPDLP
                     RPYRAWGYPWTTLIVLLGSITFLAGAVISDKKHSLWALMILAASYPLYLIVKRLYPPQ
                     AT"
BASE COUNT          837 a         1213 c         1204 g          961 t
ORIGIN      
        1 gggaatgttg ccgatcagat cgggatgatg cagagcgatg tcgccccaga acatcaagcg
       61 ccgattgtaa ggcttcagcg catcgcgcac tcgattgaga tgttcgaaat aaatcgcgcc
      121 gacgcctttc gcctgggctt cctccttgct ctgtccctca ccgagctcga aagtttcgtc
      181 ctcgccgata tgaaagaact gaccgggaaa tagttcattg agctccttat accaatcagc
      241 gattagcttg taacttccgg gctgttgggg cgagaggaca tcgccgtaag gagtttcagc
      301 taactcagcg tacttctcta aacgcaaagc cttatgcaga tgaccgaacg tctgctgttc
      361 gggaaccagc tcgacgtgat agcggcgcgc gtacgcaacc agctcgcgaa tttcatcggg
      421 cgtaagcgac ccgccggccg gcccaatcaa aggatgcgac ccgctcgcga acgtgtgctc
      481 catatagaag gagtgcatgt tgagtttgaa aaacgcctcg gtgcgaatct ggcgtttgat
      541 gtaatcgaca gtcggcaccg ggccgcggct gatgtcgtca gacaccgcgc gccagcgcat
      601 tgtcggccaa tcgacgatct tcatgccggg aataaatgcg tttgcggctt caccgcgaac
      661 gagctgcttc agggtttgca agccgcagaa agttccggtc gtggtcttcc ccgcaacgac
      721 aacttcgtgc aagccgaccg acaaaacgta tccttcgtcg ttcaactgtt ggatcgagtc
      781 aacggcggct cgcttcaggg cttgctgaat cctgggcaga tcgattcggc cgatcaggat
      841 ctcgcggcgc gcactgttgc cgccgagtct cacggtcact cccgctgtct gcttcacatc
      901 gtcgatgaaa tccagcgccg caaaccgatc ttccgctgac tgtccgtcag ccaaagccat
      961 gcgagtgtcc agcccaattt cgaattttcc ttcactgacg gtgagctgtt ttggcgccgg
     1021 aatgatttgc gtgttcggcg tttgggcatt tgccgcgacg caagcgagag caaacgcgcc
     1081 tagaattgca gttcgcagga tgagggttcg tgttagagtt gttctcattg agtcgaaaac
     1141 gctatgaccg tcataatttt caattgaaga gttttgagaa gagcgcacgt ctatttactc
     1201 gatattgatg gcgaatacaa tagctaacga gagcgatctc gtttagagtc gggacttgtc
     1261 ccgacattat gagtcggcgg acaagtccgc cgtctaaacg atgcgatggg tcttcatatg
     1321 tccttgatgc ttcaggaaat caccgagcag cctgagtcgc tcgcccgaac gattcaggaa
     1381 gagcgctcga agatcgagcg gctcggcaaa tctctcaaac aacgcaacat cgatctaatc
     1441 gtgctggtcg cgcgcggcag ctcggacaat gccgcgctgt tcggccgcta tctgctggaa
     1501 atcatgaccg gcattccggt gtcgctctcc gcgccttcgg ttcacactct ttaccatgcg
     1561 aaactcaatt tgaaacgcgc gctggtgatc ggcgtttcgc aatcaggcga aggtgaagac
     1621 atcaaccgcg ttttggagaa tgcgcgcgtg tgcggcgcgt tcacgattgg gatcacgaac
     1681 gagccggcgt cgtcgatggt caaactcgtc gaagagaccc tgctgatgca cggcggacgc
     1741 gagcgatcag tagcggcgac gaaaaccttc accgggcaaa tgctcctctt ctatatgctc
     1801 tcgtccgcgc tcgcgaaaga cggccgggcg attgattacg aaccgattcc tgatctagcc
     1861 gagcgcgcgt tggaacaaac gccggcgatc gtcgaactcg tccagcgtta cgtcttcatg
     1921 gaaaactgcg tcgtcgtcgg tcgcggtctg gcttacgcaa atgcctacga gttcgcgctg
     1981 aagttgatgg agacgtgcta cgtggtcgcc gaacgttttt cgtcggcgga ttttctgcac
     2041 ggaccggtcg cgatgatcga acgacatttc ccggtgatcc tctttgcgcc gcccggcgtg
     2101 atgctcgccg gcacgaagga cttgatcagc cgcctgcacg aacttcgcgc cgacacgctg
     2161 gcgatcacgg gcgacattga cgcggccgcg atgtgttcgc gctcgatcat catgccgcgc
     2221 gagattgacg aatttcttgc gccaattccc tacatcattc cggcgcaact cttcgcggcg
     2281 ttgctggcgg aagccaaagg cctcgatccg gacgcaccgc gatcgctttc aaaggtcacg
     2341 cgaaccttat agtccgcgca gcggacgatc ggcaatagcc cagcacttca gggtgtggac
     2401 gcaaagagat ttacaaagcc cgcgaagtgg gcgacagaag ttacagaacc cggagcagta
     2461 gcgacgggat gctgtcactc agattgagtt tatgatccgg tcgcatccac caccccaagc
     2521 gggctgcccg cttggggacc ccggtccgct cccggttctg taccaaagga cattctgccg
     2581 tccgcttcgc ggactggaga cacgtcggtc accgatagcc agcgataaat cgctgggcta
     2641 tttccggtcg tccgcttcgc ggactaagtt caaatgaagg atatcgctca atctggtgag
     2701 gttgtaacca acaatcactc gcagggaacg cttctgcgcg tgctcggcgt cggcttcggt
     2761 ctcgccgtaa caatcggcgg cacgatcggc atgggcattc tgcgcacgcc cggagaagtc
     2821 gccgctcaac tccccactcc aaagcttttc attggcgtct ggatccttgg aggagtctat
     2881 gcgctcctcg gaacaatctc ggtcgctgaa ctcggcgcga tgattccccg ctctggcggt
     2941 tggtatgttt tcgttcatcg cgcgatggga aattatccgg gcttcgtcgt gggctggagc
     3001 gattggctgt cgacttgcgg cacgctcgcg gtaatcgcga tggtcgtcgg cgaatatact
     3061 gccgtgttgg ctccgcgact ggccggccga gacaagcccg ttgcgctggc agtcgtgctc
     3121 ctgttcgccg ccttgcagtg gcgcgggatt cgctggggca gcttcacgca aaatctgacc
     3181 agcctgctaa agacggtgat cttcgcggca attgcgatcg ccgccttcac cttcgcagga
     3241 aagttagccg cgggaacgcc ttcgctcgtg cctcacaggt tcgcgttatt caccgctcta
     3301 atcatcgctt tgcagggcgt gctctacacc tacgatggct ggtacggcgt gatctatttt
     3361 ggcgaggagg ttcgcaatcc caaacgcgat gtcgtccgtt cgatgttcgg tggcgtgctt
     3421 ttggtgatcg cgatttatct cgtcgtgaac ctggcttatg tctacgtgct gccaatgtcc
     3481 caactcgccg gcgagaactt cgcggcgggc gccgtcgccc agaagatctt cggcgcttac
     3541 ggagacaaga ccatccgagt gctggcgatt ctctcgctgc tgagcacgat caatgcctac
     3601 acgttgacag cgccgcgaat tctctatgcg atgagttgcg acgaactgtt cgcgcgtcgt
     3661 gcgaaccggg tgaaccgcgg cggcacgcca accgtgactc tgctattgag caccatcgcc
     3721 gcagtgcttt tcatcgtcag cggaaccttc aacgcggtgc tggccgcgct ggcttttttc
     3781 tttgtcgcaa attacgcgat ggcctatatc tctgtgattg tgctacgccg acgcgaacct
     3841 gatctgccac gtccctatcg cgcgtggggt tatccgtgga cgacgctgat tgtgctgctc
     3901 ggttcgatca cgtttctggc tggcgcggtt atcagcgaca agaaacacag cctgtgggca
     3961 ttgatgatcc tggccgcgag ttatcctctc tatctgatcg tcaaacggct ctatccgccg
     4021 caagccacct gacaatcgat cgaacgtgct atccatttcg atcatttcaa tcaacgggct
     4081 ctcggatgcg ctcaattgtt tcggtatgct atcctcactt tcgccgcgcg tgagttgagt
     4141 tgcgaaagtg gcggaattgg cagacgcgcc agacttagga tctggtaccg aaaggtgtgg
     4201 gggttcgagt ccccc
//
LOCUS       DASZZE010000219         3269 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_104022, whole genome shotgun sequence.
ACCESSION   DASZZE010000219 DASZZE010000000
VERSION     DASZZE010000219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3269)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3269)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3269
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104022"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..567)
                     /gene="lpxA"
                     /locus_tag="VHD88_04295"
     CDS             complement(<1..567)
                     /gene="lpxA"
                     /locus_tag="VHD88_04295"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: protein motif:HMM:NF003657.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008780 -
                     acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine
                     O-acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HVS21041.1"
                     /translation="MSAPSIQSHARRGSSTQIHASAVVSPHAQIGSDCYIGPYVIVGD
                     EVTLDDRVRIDAHCVIDGRTRVGDDTHIFPFVSIGLPPQDLKFAGEASETEIGKRNRI
                     REFVTIHRGTTGGGGLTKTGDDCFLMAQAHVAHDCVLGDNVIMANAATLAGHVIVEDG
                     ANIGAYSGVHQFCRVGREAYVGGYSVVVK"
     gene            complement(564..1019)
                     /gene="fabZ"
                     /locus_tag="VHD88_04300"
     CDS             complement(564..1019)
                     /gene="fabZ"
                     /locus_tag="VHD88_04300"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: protein motif:HMM:TIGR01750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HVS21042.1"
                     /translation="METVLDSEGIKKLLPHRYPFLLVDRIIELAPLERIVGIKQVSIN
                     ESFFQGHFPGAPVMPGVLVIEALAQCGAILALREIADRDQKLVLFTGIKEARFRRPVV
                     PGDTLVLEVTALRFGPRIQRMRGEAKVDGQLCADAELMSVIADRKNTSQ"
     gene            complement(1100..1738)
                     /locus_tag="VHD88_04305"
     CDS             complement(1100..1738)
                     /locus_tag="VHD88_04305"
                     /inference="COORDINATES: protein motif:HMM:NF015871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HVS21043.1"
                     /translation="MNRNRLLVAIVLGTLIFVFPVLAQRPATQPQPRPQVPATQTTTA
                     VAVPISKVAIIFSEAFQDPKNGISKFNVLMNKLNNDEFGPRQKRLDNMAQQIRQLQDE
                     IAKLQTQPTVPANIQAKLDQVDQLKKQAQRETEDGQALYQKRRQELFGPLQDDIGKAL
                     DAYAKAHGITLIIDGSQVQGILYAADSLDITKAFISEYNSKNPVTAAATTPK"
     gene            complement(1836..2453)
                     /locus_tag="VHD88_04310"
     CDS             complement(1836..2453)
                     /locus_tag="VHD88_04310"
                     /inference="COORDINATES: protein motif:HMM:NF015871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HVS21044.1"
                     /translation="MKIFRAIAAVAFFAVVCAGAVFAQQPRTTPPGPSAPAQTVNVPD
                     TKIALVNTDEFAVETTGIHRLVSAMKRVDKEFDAKKVEIQTLQQQTDKATADLQKAAP
                     VQDPKVSQQQQDKIDQMKKDYQRKGEDAQAAYQKRLQEVLGPVYDDIGKALDVYAKAH
                     GITLILDVTKVQGIVSAEASLDITKAFITEFNSKNPATASLTQPE"
     gene            complement(2616..>3269)
                     /locus_tag="VHD88_04315"
     CDS             complement(2616..>3269)
                     /locus_tag="VHD88_04315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21045.1"
                     /translation="AYTATGADTQMLGNFEYRIPVFGRAVSAALFVDVGSAFNLRSKG
                     TQSYSSEFLADQPFLSTVGFISCPRVGNPVTVSLTTLAACNNFSNLAFYPLLGSLVAR
                     DNRIVLQGELNHEVGAGRPVDPLTGLPFGFYPVFLRGDAQTNTVVRLNQSLFAKFTDI
                     RSSMGAELRFQIPILNVPFRVIYAYNPNARRDQIIDGFPFFFNEKKSVFRFSVGRTF"
BASE COUNT          698 a          880 c          936 g          755 t
ORIGIN      
        1 tttgactacg actgagtagc cgccaacgta ggcctcacga ccaacgcggc agaactggtg
       61 cacgccggag taggcgccga tgttcgcgcc gtcttcgaca atgacgtggc cggcgagtgt
      121 cgctgcgtta gccatgatca cgttgtcacc cagaacgcag tcgtgcgcga cgtgcgcctg
      181 ggccatcaga aagcaatcgt cgcctgtctt tgttagtccg ccgcctccgg tcgtgccgcg
      241 atggatggtt acgaattcgc ggatgcgatt gcgtttgccg atctcggttt ccgaagcctc
      301 gccggcgaat ttcagatcct gtggcggcaa tccaatcgag acgaaaggaa aaatatgcgt
      361 gtcgtcgccg acgcgcgtgc ggccatcgat cacacaatgc gcatcgatgc gcacgcggtc
      421 atcaagcgtg acttcgtcgc cgacgatgac gtacggaccg atgtagcaat cgctgccgat
      481 ttgcgcgtgc ggactaacaa ccgcgctggc gtgaatctgc gttgatgatc cacgacgcgc
      541 gtgactttga atggagggag cgctcattga gacgtgttct ttcgatcggc aatgacgctc
      601 atcagttccg catcggcgca gagctggccg tcaacttttg cttcgccgcg catgcgctga
      661 atgcgcggac cgaatcgcag cgccgttact tctaaaacga gagtgtcgcc gggaacgacc
      721 ggccgccgaa agcgcgcttc cttgatgccg gtaaaaagca cgagcttctg atcgcggtca
      781 gcgatctcgc gcaaggcaag gatggcgccg cattgcgcca gcgcctcgat caccagcacg
      841 ccgggcatca cgggcgcgcc gggaaagtga ccctgaaaga aggattcgtt gatgctgact
      901 tgcttgatgc caacgatgcg ttcgagcgga gccagctcga taatccgatc gaccagcaga
      961 aaaggataac gatgcggcag gagtttctta atgccttcgg agtcgagaac cgtttccata
     1021 acttttcaga agcaaagacg cggacgggcg ggcagctacc gcatctccgc gtctgaagtg
     1081 caatacctga atgtgcccgt cactttggcg tcgtcgctgc tgcggtcacc ggattcttgc
     1141 tgttgtattc gctgatgaac gctttggtaa tgtcgaggct gtccgcggca tagagaattc
     1201 cctgcacctg gctgccgtcg ataatcaagg tgataccgtg agctttggcg tacgcatcga
     1261 gagctttgcc tatgtcgtct tgcagtggtc cgaataattc ctgacgtcgc ttttgatata
     1321 aggcttgacc gtcctcggtt tcgcgctggg cctgtttctt gagttgatcc acttgatcga
     1381 gctttgcctg aatgttcgct ggaacggtcg gttgagtttg cagtttggct atctcgtcct
     1441 ggagttgccg aatctgctgc gccatgttgt cgagtctctt ctggcgcgga ccgaactcgt
     1501 cattattcaa cttattcatc aagacgttga acttcgatat accgttcttc ggatcctgaa
     1561 acgcttcgga aaagattatg gcgactttgc tgatcggcac agcgaccgcg gtcgtggttt
     1621 gcgtagctgg aacctgcggc cgtggctgag gctgagtagc tggtctttgc gcgagaaccg
     1681 ggaaaacaaa aatcaacgtg cctaaaacaa tggcgacgag taaacgattt cgattcatga
     1741 tctgattgct ccgcgagcct tcaagctgaa gatgcggaga cgcgaccgat tgccgcacct
     1801 ccgcatccta accgaagtct ctaaaaaaag cagccctatt ccggctgcgt caaagacgcg
     1861 gttgccgggt tcttgctgtt gaattcggtg atgaaggcct tggtgatatc cagcgacgct
     1921 tcggcactca cgataccctg aactttcgtc acgtcaagga tcagagtaat gccgtgggcc
     1981 ttggcataaa catccagcgc cttgccaatg tcgtcgtaaa ccggtccgag gacttcctgc
     2041 aagcgttttt gataagccgc ttgtgcgtct tcacctttgc gctgatagtc cttcttcatc
     2101 tgatcgatct tgtcctgctg ctgttgcgag acttttggat cctgaaccgg agcagccttt
     2161 tgaagatcgg cagtcgcctt gtcagtctgc tgctggagag tttggatttc gactttcttc
     2221 gcatcgaact ctttgtcaac gcgcttcatt gcgctaacca aacgatgtat gccggtcgtt
     2281 tcgaccgcga actcgtccgt gttgaccaga gcgatcttgg tgtcgggcac attgacggtt
     2341 tgcgccggag ctgacggccc cggcggtgtg gtgcgtggct gttgggcaaa aaccgccccg
     2401 gcacagacga ccgcgaagaa agcgaccgcg gctatcgcac gaaatatctt cataactttc
     2461 tcgtaatgct ccttaacgtt gtggaggcga tctgaatgca acggtttagt tgttccggcc
     2521 gcctgtttgg tttgcctgct gaggcgcagg cgtcgttgcc tgcgattcgc cggcgtgtta
     2581 tccgctctct acggctcgcg gtttcggcaa attctctaaa acgtgcggcc tacgctgaaa
     2641 cgaaagacgc tctttttctc gttaaagaag aatggaaacc catcgataat ctggtcgcga
     2701 cgcgcgttgg gattataagc ataaatcacg cgaaaaggca cgttgagaat cggtatctgg
     2761 aagcgaagct cggcgcccat actgctgcga atgtccgtaa acttcgcaaa cagactctgg
     2821 ttgaggcgta cgaccgtgtt cgtttgcgca tcgccgcgga ggaatacggg atagaagcca
     2881 aatggcaagc cggtaagcgg atcgaccggg cggccggctc cgacctcatg attaagttcc
     2941 ccttgcagaa cgattcgatt gtcacgcgcg acaagggaac caaggagagg atagaacgcc
     3001 agattcgaaa agttattaca cgcggccaag gtagtaagac ttacagtaac cggattccca
     3061 acccgcgggc aggagatgaa cccgacagtc gataggaatg gctggtcagc gaggaactcg
     3121 ctcgagtaag actgagtgcc ttttgagcga agattgaaag ccgagccaac atcgacgaac
     3181 aacgccgcac ttaccgctct gccgaacacg ggaatgcgat actcaaagtt tcccagcatt
     3241 tgagtgtcgg cgccggtggc cgtgtaagc
//
LOCUS       DASZZE010000220         7664 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_151357, whole genome shotgun sequence.
ACCESSION   DASZZE010000220 DASZZE010000000
VERSION     DASZZE010000220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7664)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7664)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7664
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151357"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..411)
                     /locus_tag="VHD88_04320"
     CDS             complement(<1..411)
                     /locus_tag="VHD88_04320"
                     /inference="COORDINATES: protein motif:HMM:NF018684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme inhibitor LprI family protein"
                     /protein_id="HVS21046.1"
                     /translation="MILLTVPSISLAHPVATAPGSVIQEQPAQHPIDKTLVACIDKNG
                     STAGMVECADRAYAAWDKELNKNYGELMRALKPKQKEALRLAPLEWIKQRDLDFKFID
                     SLYDTFEGTMYIPMRVDARMEVIKKRALELKNYLD"
     gene            complement(529..1608)
                     /locus_tag="VHD88_04325"
     CDS             complement(529..1608)
                     /locus_tag="VHD88_04325"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: protein motif:HMM:NF013279.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008955 - peptidoglycan
                     glycosyltransferase activity [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HVS21047.1"
                     /translation="MLAVLAITIVCFGAWEIHNAQPTETFWQKQLIGLGIALVAMLLI
                     AFTDYRRLVEWAPVFYVFGLMLLVLVLIPIPGLSLKINGHRAWLKLPALGQFQPSEFV
                     KIPVVLMLARYFGKHRGASLTWKEFLTGCVILGLPMALIMLEHDAGQTLTYLPLLAIV
                     LFLSSVRMWIVAAVLLACIGGAPLAYTVGVKTGLLHGYKLERINVILDPENADKRGFG
                     YHTWQSMVTVGEGGLMGSRDSEYSQSSLKFLPEPHSDFIFAVTAETTGFVGCLMLLAS
                     YGVLLTRLITDARRSRDRTGMLVIMAIVGGLIFQIVLNVGMAVGMLPVIGVPLPLMSA
                     GLSSVLATFIAIGFAISVQLRRFVN"
     gene            complement(1593..1760)
                     /locus_tag="VHD88_04330"
     CDS             complement(1593..1760)
                     /locus_tag="VHD88_04330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21048.1"
                     /translation="MEELKRTYVVDEQNHRVAVQIDIETFNRIEEALENSWLPFYKDT
                     DSATLIGCSPF"
     gene            complement(1804..3711)
                     /gene="mrdA"
                     /locus_tag="VHD88_04335"
     CDS             complement(1804..3711)
                     /gene="mrdA"
                     /locus_tag="VHD88_04335"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR03423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HVS21049.1"
                     /translation="MKFVDDSQNLRVRLRMIQALALILLGILGVRLYLLQIINGSRYA
                     EIAENQRIRLLPIPAPRGVLFDRNGNLLVDSRPIYSVILSREDTKGIDRYSLIKPLSD
                     GLNIDPEILRERFDQVKSQPAFESILIKEDATQADISWVDAHELELPALRVEQTPQRR
                     YPPNGMLAHALGYVGEISPEQLKQQEFRAKGYKPGDIIGQDGLEAVYEEYLRGRDGYR
                     KVIVDSSGHIQSEVERIEPQSGQDIVTTIDLDLQQAAEDQLRKSPHGRGVIIAMDPNN
                     GEIFALASAPTFDPNLFSQRITTKEGRAEYQKLLNDPDKPLLDRAIQGRYPPGSTWKP
                     LMATAGLQQGAISIQSSNLVCGGGITIGNKFTRCMGGNHGSPDVHFAIMKSCDSYFYH
                     LGLKMKLEGIQAMVDEFDLNKRTGIDLPHEVISTTPSRELKARLYPRDPEWKDIDTVY
                     SSFGQGEDVLTPLALLRAHSAIGMGGKMYVPHLLKEVRAITAVGNDPTSADYRPARPG
                     RTFDRPEPKILPIPRDQNELVVHAMWSVVNVAGTATGIKMAGFDIAGKTGTAQVVGLG
                     KEGSEHKDHSWFVSYAPAFKPEISCVAMIENAGLGSRFGAPSVRAIYDVYYAKTRGTK
                     EPPVNVAMRAR"
     gene            complement(3719..4276)
                     /gene="mreD"
                     /locus_tag="VHD88_04340"
     CDS             complement(3719..4276)
                     /gene="mreD"
                     /locus_tag="VHD88_04340"
                     /inference="COORDINATES: protein motif:HMM:TIGR03426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HVS21050.1"
                     /translation="MRQLIIAAILVVAIALQSALRAVWQPLGYADLTLILVVYFALRR
                     EPLSALIVAVVAGVATDALGHGLLGAGGFSKVLAAYSVYFVAQRVMLDTTLLRIPVLA
                     GAALIDNVVYVAMNRMFGQTTTVLFVQALSYRLIATAIAGTILLYVYDSYFSERARQH
                     RQFTVRRRVARRPSGILRKGASRKW"
     gene            complement(4435..5337)
                     /gene="mreC"
                     /locus_tag="VHD88_04345"
     CDS             complement(4435..5337)
                     /gene="mreC"
                     /locus_tag="VHD88_04345"
                     /inference="COORDINATES: protein motif:HMM:TIGR00219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HVS21051.1"
                     /translation="MTAIRTQKEIRQRASWLFGALLAANFALMSYNARDEATKQRKVR
                     SVVQTVAYPIQEGASTVSGWFGGFFGRIGELRRASAENQQLHQQIDQMQTELRDTRAR
                     ASEAERLEKLFKLNEKSDYKTVVAQVIARDPSMWFDSIQIDKGSWSGIEVNMPVVTTE
                     GIVGRVVSISPLSAQVMLATDEKSGAGAVVGQLGQSNSLGSVKGLGDSGLLEMRYVSG
                     LEKVQTGDTVVTTGQDGIYPPGYNIGEVVEVRPGSATQAQIIHIRPSAGLERLKEVAV
                     LLYHPPQRSEPDQSLPNVNKKSKQ"
     gene            complement(5414..6463)
                     /locus_tag="VHD88_04350"
     CDS             complement(5414..6463)
                     /locus_tag="VHD88_04350"
                     /inference="COORDINATES: protein motif:HMM:NF010539.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000902 - cell morphogenesis [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HVS21052.1"
                     /translation="MAFFKSIFSLFSSDLAIDLGTANTLVYAKGRGIVVSEPSIVAIN
                     KVTNAVEAVGRDAKEMLGRTPGNIVAIRPMKDGVIANFEVTEKMLQHFIRKAHNGKTW
                     VSPRVVIGIPSEITQVERRAVEDSAYRAKASEVYLVEEAMAAAIGAGLPITEAFGNMI
                     VDIGGGTTDIAVISLSGIVYSKSVRVAGNEMDEAITQYIKRKYNLLIGERTAEAIKIE
                     LGSAFPLDEELSFEVRGRNLIEGIPKTITITDEEIREALADSVSTIINAVRVALERTP
                     PELSADIVERGIVLTGGGALLKNLDKRLSIETGLPVSLAEDPLASVVLGTGKMLSDFD
                     LLKRVKWDSSWTSGT"
     gene            complement(6634..>7664)
                     /locus_tag="VHD88_04355"
     CDS             complement(6634..>7664)
                     /locus_tag="VHD88_04355"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sensor domain-containing diguanylate cyclase"
                     /protein_id="HVS21053.1"
                     /translation="QVALAGIARLVPADRWAIFLVTQISGPDSVVFEPLVGRNSSFGG
                     SLLFDEQWQRELLDETHPPIALTSKAAHEAATRIEAIRKIESKRRVVALPLVSGERVL
                     GVIEGVRDHVGSRLFSRSETALLTALTIPIAAALAHSVRIAEAERLSLTDDLTKLHNA
                     RYLRQFLVNEIKRARRYGSSVAALFLDLDDFKQVNDMHGHLVGSHALMEMASVILPSV
                     RDTDCVVRYGGDEFVVILPETGVDKAVHVADRIRVKIERHHFTGGRRLKLYLAASFGI
                     AVFPGHALSPQQLIACADTAMYEAKAAGKNCIRVATGAANTEPQDRNANLTVSSQFQR
                     IPDEKSIS"
BASE COUNT         1662 a         2232 c         2100 g         1670 t
ORIGIN      
        1 gtcgaggtag tttttcaatt ccagcgcgcg tttcttgatt acttccatgc gcgcgtcaac
       61 gcgcatcgga atgtacatcg tgccttcaaa tgtgtcatag aggctgtcga tgaacttgaa
      121 atccaaatcg cgttgtttga tccattcaag cggcgccaac cgcagcgctt ctttttgctt
      181 gggcttaagg gcgcgcatca gttccccgta gttcttgttc agctctttgt cccacgccgc
      241 gtaagccctg tcggcacact cgaccatgcc ggcagtcgag ccgtttttgt ctatgcacgc
      301 gacaagcgtc ttgtcgattg ggtgctgtgc gggctgctcc tggattacag agccgggagc
      361 ggtagcgacc gggtgagcaa gtgagattga tggtacggtt agcagaatca aacaagtcag
      421 ggttgcgaat tatttcgtca ttgcagtctc cgttaggtaa gggagccctc cctcacggtt
      481 gggctaatgc cccgagaacc ccgtcgctac cgctccgggt tctgtaactt agttaacaaa
      541 tcttcgcagt tgcacgctga tcgcaaaacc gatcgcgatg aacgtggcga gcacggaaga
      601 caggccagcg ctcatcagcg gtagcggcac gccgatcacc ggcagcatgc cgacggccat
      661 gccgacgttg agcactatct gaaagatcaa gccgccgacg atcgccatga tcaccagcat
      721 gccggtgcgg tcgcgcgagc ggcgcgcgtc ggtaatcaaa cgcgtgagca gcaccccata
      781 tgaagccagc agcatcagac agccaacgaa ccccgtagtc tctgccgtga cggcaaagat
      841 gaaatctgag tgcggctcgg gcaaaaactt cagactgctc tgcgagtact cggaatcacg
      901 cgagcccatc aggccgcctt cgccgacggt caccatcgac tgccaggtgt gatagccgaa
      961 gccgcgctta tcggcgtttt ccggatcgag aatgacgttg atgcgttcca gcttgtatcc
     1021 gtgcagcaaa cccgtcttga ctcccacggt gtaagcgagc ggcgcgccgc caatgcacgc
     1081 gaggagcacc gcggccacaa tccacattcg cacggatgaa agaaagagca cgatggccag
     1141 caacggaaga taagtgagcg tttgacccgc gtcgtgctca agcataatca aagccatcgg
     1201 cagaccgaga atcacgcagc cagtgagaaa ctctttccag gtcagcgacg caccacggtg
     1261 cttgccaaaa tacctcgcca gcatcagcac gaccggaatc tttacaaact cggacggctg
     1321 aaattgtccc agcgcgggca acttgagcca cgcccggtga ccgttgattt tcaagctaag
     1381 tcccgggatt gggattagca ccaataccag cagcatcaaa ccgaaaacat agaacaccgg
     1441 cgcccactca accagacggc gatagtcggt gaaggcaatc aacagcattg cgaccagcgc
     1501 gatgcccaac ccgatcagtt gcttctgcca aaaggtttca gtcggctgcg cgttgtgaat
     1561 ctcccacgcg ccaaagcaca cgatggtgat cgctaaaacg gcgagcaacc aatcaaagtc
     1621 gcggagtctg tgtctttgta gaacggcaac catgagttct caagggcctc ttcaattctg
     1681 ttgaaggttt cgatgtcgat ttgcaccgcg actctgtgat tctgttcatc gacaacgtag
     1741 gttcttttca gttcttccat gagcgttctc ctaagttcaa gtatagcttt cccggcaccc
     1801 cattcaccga gctctcatcg cgacgttcac tggtggctct tttgtgccgc gcgtcttggc
     1861 gtagtaaacg tcgtatatgg cgcgcactga cggcgcgccg aagcgcgaac ccagccctgc
     1921 attttcgatc attgcgacgc aggagatttc aggtttgaag gccggcgcgt aagagacgaa
     1981 ccacgaatga tccttgtgct cgctgccttc cttgccgagg ccgacgacct gcgcggtgcc
     2041 ggtcttgccg gcgatgtcga acccggccat cttgatgccg gtggcggtgc ccgcgacgtt
     2101 cacgaccgac cacatggcgt ggaccaccaa ttcgttttgg tctctgggga tcggaagaat
     2161 ttttggttcg ggacgatcga aagttcgccc cggtcgcgcc ggccgataat cggcgctcgt
     2221 cggatcgttg ccgaccgcgg taatcgcgcg cacctctttc aagagatggg gcacgtacat
     2281 cttgccaccc attccgatgg cggaatgcgc gcgcaacaaa gcgagcggcg tcagcacgtc
     2341 ttctccctgt ccgaacgaag aataaaccgt gtcgatgtct ttccattcag gatcgcgcgg
     2401 atagaggcgc gctttcagtt cgcgcgaagg cgtcgtgctg atcacttcat gaggcaggtc
     2461 tatgccggtg cgcttgttga gatcgaactc gtcgaccatc gcctgaatgc cttccagctt
     2521 catcttcaga ccaagatggt aaaaatagct gtcgcacgat ttcatgatcg caaaatgcac
     2581 atcgggcgag ccgtgatttc cgcccatgca gcgcgtgaat ttatttccga tcgtgatgcc
     2641 gccgccgcag acgaggtttg aactctgaat cgagatcgcg ccctgttgca atccagccgt
     2701 cgccatcaaa ggcttccacg tcgagcccgg cggatagcgt ccctgaatcg cgcgatcgag
     2761 cagtggcttg tccggatcgt tcagcagttt ctgatattca gcgcggcctt ctttggtcgt
     2821 aatgcgttgc gaaaagagat tcggatcgaa agtcggcgcg gacgccagcg cgaaaatctc
     2881 tccgttgttc ggatccatcg cgataatgac gccgcgaccg tgcggtgatt tgcgaagttg
     2941 atcttcggcg gcttgttgca gatcgagatc gattgtcgtc acgatgtcct ggccggactg
     3001 cggttcgatt ctctcaactt cgctttgaat gtggccgctg ctatcgacga tcactttccg
     3061 ataaccgtct cgcccgcgca ggtactcttc atagacggct tccagcccat cctgcccgat
     3121 gatgtcgccg ggcttgtagc ctttggcgcg gaattcctgt tgtttcaatt gctccgggct
     3181 gatctccccg acgtaaccaa gcgcgtgggc cagcatcccg ttcggcggat aacgacgttg
     3241 cggagtttgc tcaacgcgca gcgcgggaag ctccagctcg tgcgcatcaa cccaggagat
     3301 gtccgcctgg gtggcgtctt ctttgatcag aatcgattca aaagcaggtt gtgacttcac
     3361 ctgatcaaag cgctcgcgca gaatttccgg atcgatgttc aagccatccg aaagcggttt
     3421 gatcagcgag tagcggtcga tgcctttggt gtcttcgcgg gaaaggatga cgctgtagat
     3481 cggccgcgag tcaaccaaaa ggtttccgtt gcgatcgaaa aggacgccgc gcggcgcggg
     3541 gatcggcagc aagcgtatgc gctggttctc ggcaatttcg gcgtagcgtg agccgttgat
     3601 gatctgaagc agataaaggc ggaccccaag tattccgagc aggatcagcg ccagcgcctg
     3661 aatcatgcgc aaacgcacgc gcaggttttg tgaatcgtca acgaacttca ttgcttcatt
     3721 accatttacg actcgcgccc tttcggagta tccccgacgg gcgacgcgca acgcgacggc
     3781 gaaccgtgaa ctgccgatgc tgccgggctc gctcgctaaa ataagaatcg tacacgtaaa
     3841 gcaaaatcgt gccggcgatc gccgtcgcaa tcaagcggta agacagagct tgcacaaaaa
     3901 gcaccgtcgt cgtttggccg aacatccgat tcattgctac gtacacgacg ttatctatca
     3961 aagctgcacc cgctaagaca gggatgcgca ggagcgtagt gtcgagcatc actcgctggg
     4021 cgacgaagta aactgagtag gccgccagca cttttgaaaa gcctcccgcg ccgagcaagc
     4081 cgtgccccag cgcgtcagta gccactccgg cgacgactgc gacaatcagc gcgctcagcg
     4141 gctcgcgccg caaagcaaaa tagaccacga ggatcagcgt caagtcggca taaccaagcg
     4201 gctgccagac agctcgcagc gccgattgca gcgcgatggc cacgaccagt atggctgcga
     4261 ttatcagttg acgcatggcc ggttagcagt cggcagtgag cagtgagcag tgagcagttc
     4321 ggagagctga tcacaaaacg accacatctc gattccttca ttactcatgc gcggctgcct
     4381 cgtttgctaa acaaagtaaa cgtggaccgg agaaaactgt ttactgctca cggctcactg
     4441 cttactcttc ttgttcacgt tggggagcga ctgatccggt tctgagcgtt ggggcgggtg
     4501 atacagcagc acggcgactt ctttcaacct ttccagtccg gcgctcggtc gaatgtgaat
     4561 tatctgcgcc tgcgtggccg agcccggccg cacctcgaca acttcaccga tgttatagcc
     4621 gggcggatag attccatcct ggccagttgt cacgacggtg tcgccggtct gcactttctc
     4681 gagtcccgaa acgtagcgca tctcaagcaa gccactatcg ccaaggcctt tgactgagcc
     4741 caacgaattc gattggccca actggcccac caccgcgccg gctccggatt tttcatcggt
     4801 ggccagcatc acttgcgcgc tcaatggact gattgacact acgcgtccca cgattccttc
     4861 agtcgtgacc accggcatgt tgacttcaat tcccgaccaa ctgcccttgt cgatctgaat
     4921 actgtcgaac cacatcgaag gatctctcgc gatgacttgc gcgacgacag tcttgtagtc
     4981 gcttttttca tttagcttga aaagtttctc gagccgttca gcttcggacg cgcgcgcgcg
     5041 cgtatcgcgc aactcggttt gcatttgatc gatctgctgg tgcagttgtt ggttttcggc
     5101 cgaagcccga cgcaactcac caatcctgcc aaagaatccg ccgaaccaac cgctcacggt
     5161 cgaagcgcct tcctgaatcg gataagccac tgtctgtacg actgagcgaa ccttgcgctg
     5221 tttggtggct tcgtcgcggg cgttgtaact catcaacgca aagttcgccg cgagcaatgc
     5281 cccaaacaac cacgaggctc gctgacggat ctctttttgt gtgcgaatgg cggtcattgc
     5341 aagactagag gtcagtgatc agggatcaga ggttagcttc tgatccctga cctctaagct
     5401 ctgacctctg ttgttacgtt ccgctcgtcc aactgctgtc ccacttcacg cgtttgagca
     5461 ggtcaaaatc cgagagcatc ttgccggtgc cgagcacgac tgaagccagc ggatcttcgg
     5521 ccagagaaac gggcaagccg gtctcgatcg acaacctttt atcgaggttt ttcaataatg
     5581 cgccgcctcc ggtcaatacg atgccgcgct cgacaatgtc agccgaaagc tccggcggcg
     5641 ttcgctccag cgcgacgcgc acggcgttga taatcgtcga aacagaatcg gcgagggcct
     5701 cgcgaatttc ttcatcagtg atcgtaatcg ttttcggaat gccttcgatc aggttgcgac
     5761 cgcgcacttc gaacgacagc tcttcgtcga gcggaaatgc cgaacctaat tcaatcttga
     5821 ttgcttccgc cgtgcgctcg ccgatcagca aattgtattt tcgtttgatg tactgcgtga
     5881 tcgcttcgtc catctcgttg ccggcgacgc gcaccgattt tgaatagacg atgccgctca
     5941 aactgatcac ggcgatgtcg gtcgtgccgc cgccaatgtc cacgatcatg ttgccgaacg
     6001 cttcggtgat cggcagcccg gcgccgatcg ccgcagccat cgcttcttcg accagataaa
     6061 cttccgacgc tttcgcgcga tacgcggaat cttccacagc acgtcgttcg acttgcgtaa
     6121 tctctgacgg aatgccgatg acgacgcgcg ggctgaccca cgttttgccg ttgtgcgctt
     6181 tgcgtatgaa gtgctgcaac atcttttcag taacttcgaa attcgcaatc acgccgtctt
     6241 tcatcggccg aatcgcgacg atgttgccgg gcgtgcggcc caacatctct ttggcgtcgc
     6301 ggccgacggc ttcgactgcg ttcgtcactt tgttaatcgc gacgatcgac ggttcagaga
     6361 cgacaatgcc gcggcccttt gcgtaaacca gagtgttggc agtgccgagg tcaatcgcca
     6421 ggtcgctgga gaaaagacta aaaatagatt tgaaaaaagc catctgagaa aggttttcct
     6481 gactgtaaaa tgaaagcgcc cgaagaggtg agcggtcaat ttcagttgct gccttagaag
     6541 ccgcgagact tcgcgagcgg gcctggcaaa tcgaaacaac tcaccgaagc tgagccgaac
     6601 taacacgata caacgattcg cgcgccaacg ctatcacgaa attgacttct cgtcgggaat
     6661 tctttgaaac tgtgaggaga cagtcagatt agcgtttcgg tcttgcggtt cggtgttcgc
     6721 agcgccggtc gcaactcgga tgcagttctt gccggcagcc ttggcttcgt acatcgccgt
     6781 gtcagcgcag gcgattagtt gctgtggcga taacgcgtgt ccgggaaaca ccgcgatgcc
     6841 gaaactggcc gctaggtaaa gcttcaaccg ccttccgccg gtaaaatggt ggcgctcgat
     6901 cttaacgcga atccgatcgg cgacatgaac cgccttatcg actcccgtct cgggcagaat
     6961 cacgacgaac tcgtcgccac cgtagcgcac aacacaatcc gtgtcgcgaa cggacggcag
     7021 gattaccgaa gccatctcca tcagggcatg cgagccgacc agatgaccgt gcatgtcgtt
     7081 cacttgtttg aagtcgtcca gatcaagaaa cagcgccgcg acgctcgaac cgtatcgccg
     7141 cgcgcgcttg atctcgttca ccagaaactg ccgcaggtaa cgtgcgttgt gcagcttcgt
     7201 aagatcgtcg gtaagtgaca ggcgttcagc ttcggcaatg cgcaccgaat gagcgagcgc
     7261 cgccgcaata ggaatggtga gcgctgtgag caatgcagtt tccgatcgag aaaacaatcg
     7321 actgccgaca tgatcgcgca ctccttcaat cacgcccaga actctctcgc cgctgacgag
     7381 cggcaaagcg acgactctcc gcttactttc gatttttctg atcgcttcga tccttgtcgc
     7441 agcttcgtgc gcagctttcg acgtgagcgc gatcggcgga tgagtctcat ccaacagttc
     7501 gcgttgccac tgctcgtcaa ataacaacga tccgccgaag gaagagttac gtccgacgag
     7561 tggctcgaag acgaccgaat ccggaccgct gatttgtgtc accagaaaga tggcccagcg
     7621 atctgcggga acgagtcgtg caattccggc gagcgcaacc tgac
//
LOCUS       DASZZE010000221         1605 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_187712, whole genome shotgun sequence.
ACCESSION   DASZZE010000221 DASZZE010000000
VERSION     DASZZE010000221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1605)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1605)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1605
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187712"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1562)
                     /locus_tag="VHD88_04360"
     CDS             complement(<1..1562)
                     /locus_tag="VHD88_04360"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HVS21054.1"
                     /translation="MTLAAGTRLGRYEIRSPLGAGGMGEVYLAEDTRLNRKVAIKFLP
                     LDSVASEQANRRLLREARAAAKLDHPNICAIHEVGEEDGQTFIVMQYVEGETLDIRIK
                     RRPLDLSASLTVASQIADALTEAHSHGIIHRDIKPSNVIITSRGQAKVMDFGLAKLIQ
                     TAAGADSQVDTETMLTGRGAIPGTVPYMSPEQLRGESLDARSDIFSFGVLLYEMLSGR
                     QPFVCESATATISAILTDEPPSLASSRADVSEDLQRIVRKCLEKDRDSRYQSTRELVV
                     DLRNLQRDSASSSAPKRADPHRRRKSIDSVAILPLVNATDDPNVEYLSDGITESTINS
                     LSQLPKLKVMARSTVFRYKGPDNDPLEVGRALGVRAVLAGRVLQVGERLMISVELVDV
                     SDGSQLWGEQFSRKLSDIFVVQEEISTEITEKLRLKLSGAQKKRLAKRYTENAEAYQL
                     YFKGRFYWNKRTEQATNKSIELYLQAIELDRNYALAHAGLADSYTKLGDIGIAVMPPR
                     RRLQRQESQQSVL"
BASE COUNT          328 a          450 c          446 g          381 t
ORIGIN      
        1 agcacgctct gctgcgactc ttgcctttgc aaacgcctcc ttggcggcat cactgcgatc
       61 ccgatgtcgc caagtttagt atacgaatcc gcaaggcccg cgtgggccag cgcataatta
      121 cgatcgagtt cgattgcctg aagataaagc tcaatgctct tgttcgttgc ctgctcggtt
      181 cgtttgttcc aatagaagcg acccttgaaa tataactggt aagcctcggc gttctccgtg
      241 taacgcttag cgagccgctt tttttgtgcg ccgctcaact tgagccgcaa cttctcggtg
      301 atttcagtag aaatctcttc ctgaaccacg aagatgtccg agagtttgcg gctgaactgc
      361 tcgccccaga gttgcgagcc atcagacacg tcaacgagct cgacactgat catcagtcgc
      421 tcaccgactt gaagaactct tcccgccagc actgcacgca cgccaagagc gcgtccgact
      481 tcaagcggat cgttatcagg ccccttgtag cggaagactg tgctgcgcgc catcaccttg
      541 agcttcggaa gctgcgaaag actgttgatg gtgctttcag ttatgccatc gctgagatac
      601 tccacgttgg gatcgtcggt ggcgttgact agcggcaaaa ttgccacgga atcgatcgat
      661 tttcgtcggc gatgcggatc ggctcgcttc ggcgcggaac tggatgctga gtcacgctgc
      721 aggtttcgca agtcaaccac gagttcgcgg gttgattggt agcgagagtc gcggtccttc
      781 tcgagacact tgcgcacaat gcgctgcaag tcttcagata catccgcgcg cgaactggcc
      841 agcgagggcg gttcgtctgt aagaatcgct gagatagtcg ccgtagcact ttcacacaca
      901 aacggctgtc ggccactcag catctcgtag agcagcacgc cgaagctgaa gatatcgctg
      961 cgcgcgtcaa gcgactctcc gcgcaactgc tcgggcgaca tgtagggcac tgtgcctggt
     1021 atcgcaccgc gtccggtcaa catcgtctcg gtgtcaacct gactatccgc gcccgctgct
     1081 gtctgaatta atttcgccag accaaagtcc atcaccttgg cttggcctcg cgaagttatg
     1141 atgacgttcg atggcttaat gtcgcggtgg atgatcccgt gcgagtgtgc ttcggtaagc
     1201 gcgtcggcga tctgcgaggc gacggttagc gatgctgaca ggtcgagagg ccttcgcttg
     1261 attctgatgt caagtgtctc accttcaaca tactgcatca cgataaaagt ctgaccgtct
     1321 tcttcgccga cctcatggat ggcgcagatg tttgggtgat cgagtttggc tgcggctctg
     1381 gcttcgcgca gaagtcgtcg attggcttgc tcactggcaa ctgaatcaag cggcagaaat
     1441 ttgatggcaa ccttgcgatt tagtcttgta tcctccgcca ggtaaacttc gcccattccg
     1501 cccgcgccaa gtggcgagcg gatttcatag cggccgagac gtgtaccagc agcaagcgtc
     1561 atcgaacgcg tcgcgaggta atgccgggga ttttgaattg acgag
//
LOCUS       DASZZE010000222         3416 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_39687, whole genome shotgun sequence.
ACCESSION   DASZZE010000222 DASZZE010000000
VERSION     DASZZE010000222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3416)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3416)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3416
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39687"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..631
                     /gene="nrfD"
                     /locus_tag="VHD88_04365"
     CDS             <1..631
                     /gene="nrfD"
                     /locus_tag="VHD88_04365"
                     /inference="COORDINATES: protein motif:HMM:NF015851.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NrfD/PsrC family molybdoenzyme membrane anchor
                     subunit"
                     /protein_id="HVS21055.1"
                     /translation="AVGIIPGWHATIFPPYFVAGAIYAGFAMVLLLTIPLRKVYGLQS
                     FITMRHMHNMAKVMLATGLIVVYGYMVEAFFGWYSGNQYEHFMIWNRMHGPYAPYYWA
                     LILCNGITPQLLWFKKIRANLLVLWLISFVVSIGMWLERFVIVVTSLHRDYLPSSWGF
                     YQPSPWDWSMFIGTIGFFLALLFLFIRFLPMISIFEMRTILPEAEVEEG"
     gene            750..1292
                     /locus_tag="VHD88_04370"
     CDS             750..1292
                     /locus_tag="VHD88_04370"
                     /inference="COORDINATES: protein motif:HMM:NF023249.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3341 domain-containing protein"
                     /protein_id="HVS21056.1"
                     /translation="MKAKKQHLYGVMAQFDSPSTLVAAAKETYAAGYRRINGYSPFPI
                     EELSEAIGFTRTSLPLIVLLGGIIGGVGGFFMQYWMEVIDYPINVGGKPFNSWPAFIP
                     ITFECTVLVAAFAAVLGMLALNKLPQPYHPVFNAPNFALATRDSFFLVIESKDPKFDH
                     DEVMKFLKSLEARDVSDVEL"
     gene            1432..2076
                     /locus_tag="VHD88_04375"
     CDS             1432..2076
                     /locus_tag="VHD88_04375"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HVS21057.1"
                     /translation="MQDQPKSIAYRQSTFFKDGVSSRPLVEGTVPRGYLRADREFYFG
                     KKPSAVGAQPGFPSISAQITRPNLGQSASSNPNAAAMFPDDVDTFPFPITKEVLDRGQ
                     ERYQIFCSACHGMTGNGDGMVARRGFNKPAPASFHQDKLRQAPVGHFFDAITNGWGAM
                     PSHASQIPVEDRWKIIAYIRALQLSQMPAGSSSAAQAPSAKPGGQDVRAPGRTK"
     gene            2073..3260
                     /locus_tag="VHD88_04380"
     CDS             2073..3260
                     /locus_tag="VHD88_04380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21058.1"
                     /translation="MIQSGYTPPPELSRVRTLARIVGIVFLVVFVAGLFTDRPQFFQS
                     YLVGFIFWIGITLGSLALLMLQHLTGGAWGLVIRRVLEASTRTLPLMLILFVPIALGL
                     KEIYSWTNAIEMNRSAALANKAAHYLNPSFFIVRAAIYFAIWSLLAILLNWFSLQQDR
                     TADSKFRKRMQMMSGPGLGVFVITVTFAAIDWVMSLDPAWSSTIFGLLFVAAWTMSAL
                     AFTILAMAWLSQRAPMNEVVRPWHFHDLGNLTLALVMLWTYFAFSQFLIIWSGNLPEE
                     TTWYVARRQGGWGAIAIGIVILQFAFPFMILLSRAAKRNAQKLAMLAVLILLMRVVDV
                     IWLIEPTFNREHFHLSWMDVVAPIAMGGLWLAMFSWQLQKRALIPINDPQLEQALAAH
                     AGH"
BASE COUNT          696 a          880 c         1023 g          817 t
ORIGIN      
        1 cgcggtcgga atcattcccg gctggcacgc gacgatcttt ccgccttact tcgtggccgg
       61 cgcaatctat gcaggctttg cgatggtcct gctgctgacg attccgttgc gcaaagtcta
      121 tggcctgcaa agcttcatca cgatgcgcca catgcataac atggcgaagg tgatgctggc
      181 gaccggcctg atcgttgtgt acggctacat ggtcgaagcg tttttcggct ggtacagcgg
      241 caaccagtat gaacatttca tgatctggaa tcgcatgcat ggtccgtacg cgccttacta
      301 ttgggcgctg attctgtgca atggaatcac gccacagctg ctgtggttca aaaagattcg
      361 ggcgaacctg ctggtgcttt ggttgatctc gttcgtggtg agcatcggca tgtggctgga
      421 gagattcgtg attgtcgtga ccagtttgca tcgcgactat ctaccgtcgt cgtgggggtt
      481 ttatcaaccg tcaccgtggg actggtcgat gttcatcggc acgattggat ttttcctggc
      541 gctgctgttt ctgttcatac gctttctgcc gatgatttcg attttcgaga tgcgcacgat
      601 tttgccggaa gctgaagttg aggaagggta gtgtcagaag cccgcgcgta agcaagggca
      661 actagccctc cctaacggtc gggcttctga cactcgtttt cttaatcaag aatgtcaaat
      721 gataaatgga aaatgattga cttcttttta tgaaagcgaa gaagcaacat ctttacgggg
      781 taatggccca gttcgacagc ccgagcacgc tggtagcggc ggcgaaagag acgtatgcgg
      841 cgggctatcg ccgcatcaac ggctattcgc cgtttccgat cgaagagttg tcggaagcga
      901 tcgggtttac gcgcacaagt ctgccgctga ttgtcctgct gggcggaatc attggcggcg
      961 tgggcgggtt tttcatgcag tactggatgg aagtgatcga ctatcccatc aacgtcggcg
     1021 gcaaaccatt caacagttgg ccggcgttca ttccgatcac gtttgaatgc acggttttgg
     1081 tggcggcgtt cgcggcggtg ctcggcatgc tggcgctgaa caaattgccg caaccctatc
     1141 atccggtttt caacgcgcct aatttcgccc tcgcaacgcg cgacagtttc tttctggtga
     1201 tcgaatcaaa ggatccgaag ttcgatcacg acgaggtgat gaagtttttg aagagtctgg
     1261 aagcgagaga tgttagtgat gtggaactct gaagaacaga aggcagtagg caggaggcag
     1321 aaggcagaac gccaagcaac gatcggcgag cggcctcttc cgcttcgggg acttattttc
     1381 tgcctactgc tttctgcctt ctgccttctg gcggcgggct gtcgccgcga catgcaggac
     1441 caaccaaagt cgatcgctta ccgccagagc acgttcttca aagacggagt ttcgtcgcgg
     1501 cctttggtcg aaggcaccgt gccgcgtggt tacctgcggg cagaccgcga gttttatttc
     1561 ggtaagaaac cgagcgccgt cggcgcccaa cccggctttc catcgattag cgcgcaaatc
     1621 actaggccga acttgggaca gagtgcaagc tcaaatccaa atgccgccgc gatgtttccc
     1681 gacgacgtcg acacttttcc ttttccgatc acgaaagaag ttctcgatcg cggacaggag
     1741 cgctaccaga tcttctgttc ggcgtgtcac ggcatgacgg gtaatggcga tggaatggtg
     1801 gcgcggcgcg gcttcaataa acccgcgccg gcgtcgttcc atcaagacaa actgcggcag
     1861 gcgccggtcg gacatttctt tgacgcgatc actaacggct ggggcgcgat gccgagccat
     1921 gcttcgcaga ttcccgtcga agatcgttgg aagattatcg cgtacattcg cgcgctgcaa
     1981 ttaagtcaga tgccggcggg cagtagttcc gcggctcaag caccgagcgc gaaaccaggc
     2041 ggacaggatg tccgcgctcc cgggagaacg aagtgattca gtcaggctac acaccaccgc
     2101 cagaactcag ccgcgtgcgc acgctcgcgc ggatcgttgg cattgtgttc ctggttgtat
     2161 ttgtcgccgg cctgttcacc gatcgcccac agttcttcca atcttacctg gtcggattca
     2221 ttttttggat aggaatcacg ctgggcagtc tggcgctctt gatgttgcag catctgacgg
     2281 gcggcgcgtg ggggttggtt attcgtcgcg tgctcgaagc gtccacgcgc acgctgccgt
     2341 tgatgctgat tctgttcgtg cccatcgcgc tcggtttgaa agaaatctat tcgtggacga
     2401 atgcgataga gatgaaccgg agcgctgcac ttgccaacaa agccgcgcac tatctgaatc
     2461 catcgttctt cattgtccgc gccgcgatct atttcgcaat ctggtcgctg ctcgcaatct
     2521 tgctgaactg gttttcgctg caacaggatc gcaccgcgga ttccaagttc aggaagcgaa
     2581 tgcagatgat gagcggcccg gggctgggcg tgtttgtgat caccgtgacg ttcgcggcga
     2641 tcgactgggt gatgtcgctt gatcccgcgt ggtcatcgac catctttgga ttgctgtttg
     2701 tggcggcgtg gacgatgagc gcgctggcgt tcacgattct ggcgatggcc tggttgtcgc
     2761 aacgcgcgcc gatgaacgag gtcgtgcggc cttggcattt tcacgatctg ggaaatctga
     2821 cgctggcgct cgtgatgctt tggacgtatt tcgcgttctc gcaattcctg atcatctggt
     2881 cgggcaattt gccggaagaa acaacctggt acgtcgcgcg caggcaaggc ggttggggcg
     2941 caatcgcgat tgggattgtg atcctgcagt ttgcctttcc gttcatgatt ctgctttcgc
     3001 gcgcggcaaa aaggaatgcg cagaagctcg cgatgctggc ggtgctaatc ctgttgatgc
     3061 gcgtggtaga tgtaatctgg ctgatcgagc caaccttcaa tcgcgaacac tttcatttga
     3121 gctggatgga cgtcgtagcg ccgatcgcga tgggcggact gtggctggcg atgttttcgt
     3181 ggcagttgca gaaacgagct ttgattccaa ttaacgatcc gcagcttgag caggcgctcg
     3241 cggcgcacgc gggacactga ggaagagtag gcagtaagca ggaggcagta ggcagaaaga
     3301 aagcaggtca gtaccacctg cggtagcggg tgggtgataa gtagaaactt gatggcagaa
     3361 tcgaataaca aaacacacgt cactgaaacg cccgacgttt cttacatcaa gaacgt
//
LOCUS       DASZZE010000223         5372 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_203622, whole genome shotgun sequence.
ACCESSION   DASZZE010000223 DASZZE010000000
VERSION     DASZZE010000223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5372)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5372)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5372
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_203622"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..556
                     /locus_tag="VHD88_04385"
     CDS             <1..556
                     /locus_tag="VHD88_04385"
                     /inference="COORDINATES: protein motif:HMM:NF025877.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Wzt carbohydrate-binding domain-containing
                     protein"
                     /protein_id="HVS21059.1"
                     /translation="DSAAAAGESTIAVDESIEPLSYTYRHGNGNVQIIAADLMDGARR
                     RVEIAETGEPLTMRVLARIDKNVDDPIVGFLIRNRHGISAYGTNTKEQQIDLGAARRG
                     DLFEVIFSFNCWLGVDNYSITCAVHSRDGEAYDWIDGARFFRVTSEMVTEGVANLNAS
                     ASARRVESSAALNDENQLREAVRA"
     gene            572..1417
                     /locus_tag="VHD88_04390"
     CDS             572..1417
                     /locus_tag="VHD88_04390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21060.1"
                     /translation="MESILSEIRERVRVEEERSASAVEQIVREDQAYDSSVASDAQTE
                     SLARVSAHLTTTARAWDRLPPMISNRSGASARLELWVKARLKTLSRWFTWEQVNFNAA
                     VHHALSETLQALSAYEQEITRMRAELSKETEVRREKFERSSRELTALRASIEAQAAEI
                     RKRDANVEARSADIEARSAAIETRAAEMATEMNAARLEIDEARVMMNAARVEIDEART
                     EMTSRLAELAGELRERDEQLLAEQRVCFKQLSLETSEAAVLEDRGRRAIESRLAKLEK
                     LNGEK"
     gene            1468..2799
                     /locus_tag="VHD88_04395"
     CDS             1468..2799
                     /locus_tag="VHD88_04395"
                     /inference="COORDINATES: protein motif:HMM:NF014414.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HVS21061.1"
                     /translation="MSDSRKSNLYARAGIDDVGEFYRTKFVSDEVLDARYFKPLDRFD
                     MRFARTMWVYDNVRVGSDVLDLGCGAGMLALLKRKGVSLTGVDVSAECALAALRNGYD
                     TTTTAKLSHLPFADASFDYVVSLDVFGHVGFEEKDAVLSEIKRVLRRDGVTMHGIECT
                     DRSAQKNYEEMSAAELRQFIEVDGHVGLEEEQEHAVRFRRFFQNVAWEPRYTLCLSSE
                     EFLKQANKYGLNFEADFLDYLRGLSFKERRAFDMAMGYVFNKVSDLNIDLPKSGLYVF
                     LKASNAPLGPFYNEHRDRRALHPTNGRVGQFACLDRSTATTFDDGWYEPNLLPPIARW
                     MSNRGRIRFHAPNLSAISIDLTTHMPDLRMKPLVLEFILNGVALCRFSVLSNSWLDLR
                     LAMPASLASENAEDFELEIRADRTWQPRPTNDETRDDRELSIAVCNIVIEE"
     gene            2796..3848
                     /locus_tag="VHD88_04400"
     CDS             2796..3848
                     /locus_tag="VHD88_04400"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HVS21062.1"
                     /translation="MIRNVLICTTQVPFTSGGAESHVEGLRRALIEAGYRAEIVALPF
                     KWYPPTEIMRGAMAWRLVDVTAANGKPVDLVIGMKFPAYLAAHDRKVLWIMHQHRAAY
                     NLWGTPFDDLSSYPEGVRVREWIQHGDRNFISQAKKVFANSKTVAERLKRYNDIDSEP
                     LYHPPPLADRLRTGERGDYIFYPSRIEPQKRQDLLIEAMRFVRTPVKVVFAGSTADAK
                     HYDSLIRKNGVGDRVAMRGFVSDNELIELYANALGVCYLPFDEDYGYVTLEAMLSGKP
                     VIVARDGGGATEFVEHDSEGFIVDPEPQAIADCLDTLYANRERASAMGRRGEEKIRAM
                     NLSWDQVVSRLISAAE"
     gene            4166..>5372
                     /locus_tag="VHD88_04405"
     CDS             4166..>5372
                     /locus_tag="VHD88_04405"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HVS21063.1"
                     /translation="MAASVLLMPLSAFAQTKISYHNNKFKPTDDVKLGRQAAAEAEQQ
                     FPLLRDSEVNVYVEKIGQRLVASIPLEFRHPEFRYYFKVINASDINAFALPGGPMYVN
                     RGMIEAARTEGEMAGVMAHELSHVALRHGTAQATKAQKYAVGAGVAGILGTILGGPGL
                     GQVAQAPFGIYFLKYSREYETEADLLGARIMANAGYDPRDLANMFRTIEAQGGGGGGG
                     FLSDHPSPENRYARINQEAQYLRVNNPIRDNTEFNRIKERLRGYPRAQSMAEIQRNGR
                     RQGDNNPDQGNNYPSNPPRGRVENPSSRLRAYSEFGVLRVSVPDNWRELSDQGSSVWF
                     APEGAYGTTNGQVVYTHGVNIGATRTNSRNLQQATNEFVNALQQGNNNLRARSNYQRT
                     YVDGRNALSL"
BASE COUNT         1244 a         1438 c         1593 g         1097 t
ORIGIN      
        1 cgactcagcc gcggccgccg gcgaatcaac aatcgcggtt gacgaaagca ttgaaccact
       61 cagctacact tatcggcatg gcaacggcaa tgtccagatc atcgcagcgg atctgatgga
      121 cggcgcgcgt cgtcgcgtgg agatcgccga aacgggtgag ccgctgacga tgcgggtact
      181 ggcccgcatc gacaaaaacg ttgacgaccc gatcgttggt tttctcatac gcaatcgtca
      241 tggcatcagc gcctacggta cgaacaccaa agagcagcag attgatttgg gcgccgcgcg
      301 ccgcggcgac ttgttcgaag ttattttttc tttcaactgc tggttgggcg tggacaatta
      361 ttcgatcacg tgcgcagtgc acagccgcga cggcgaggct tacgactgga tcgatggcgc
      421 gcgttttttt cgcgtgacga gcgaaatggt gactgagggt gtcgctaatc tcaatgcgag
      481 cgccagcgcg cggcgtgtgg aaagctcggc ggcgctgaat gatgagaatc aattgcgaga
      541 agcagtcaga gcgtgagtca tggttgatga agtggaaagc atcctaagtg aaatacgcga
      601 gcgcgtgcgc gtcgaagaag agcgctctgc aagcgcggtc gagcaaatcg tgcgagaaga
      661 tcaagcttac gattcttcgg ttgcatcaga tgcgcaaact gaatcactgg cgcgcgtctc
      721 tgctcacctg acgacgaccg cgcgcgcgtg ggaccgactg ccgccaatga tcagcaatcg
      781 gagcggagcg tcggcgcgcc ttgagctgtg ggttaaggct cgactcaaga cacttagccg
      841 ctggttcact tgggagcagg tcaacttcaa cgccgctgta caccacgcgt tgtccgagac
      901 tctgcaagct ttgtctgcat acgagcagga aattacgcga atgcgcgccg agttaagtaa
      961 agaaacggaa gtgcggcgcg aaaaattcga gcgcagcagt agagagttga cggcgctacg
     1021 agccagcatc gaggcccagg ccgctgagat caggaagcgc gacgcgaacg tggaagcgcg
     1081 aagcgccgac atcgaagctc gcagcgcggc catcgaaacg cgggcggcgg agatggcgac
     1141 agagatgaat gcggcacgct tggagatcga tgaggcacgc gtgatgatga atgcggcgcg
     1201 cgtggagatc gatgaggcac gtaccgagat gacgtcgcgc ctcgccgaac tcgccggcga
     1261 gttgcgcgag cgtgacgagc aactgctcgc agagcaacga gtatgtttca agcagctttc
     1321 gcttgaaaca agcgaagccg cagtgctgga agatcgtggc cgccgcgcga ttgaatcgcg
     1381 tcttgcaaaa ctggaaaaat tgaacggcga aaagtaaaac cgctttcgcg cccgtcaggt
     1441 gtcgccttca actctttggc agcaatcatg tccgactcac gaaaaagcaa tctctacgcc
     1501 cgtgcgggca ttgacgacgt aggcgagttt tatcgcacca agttcgtctc ggacgaagtg
     1561 cttgacgcgc gctatttcaa acctctcgat cgcttcgaca tgcgcttcgc gcgcaccatg
     1621 tgggtttacg acaacgtgcg cgtgggctct gacgtactcg atttaggctg cggcgccgga
     1681 atgctggcgc tgctgaagcg caaaggcgtg tcgctcaccg gcgtcgatgt ctcagccgaa
     1741 tgcgcacttg cagcgctacg taacggttat gacacgacga cgacggcgaa actctcgcat
     1801 cttccttttg ctgacgcgag cttcgattac gtcgtgagcc tcgacgtttt tggccacgtc
     1861 ggttttgaag aaaaggatgc ggtgctcagc gaaataaagc gcgtgctgcg ccgcgatggc
     1921 gtaacaatgc acgggatcga gtgtacggat cgcagtgcgc aaaagaatta cgaagagatg
     1981 agcgcggctg agctgcgtca gttcatcgaa gttgacgggc acgtcggcct ggaagaagag
     2041 caggagcatg cagtgcgctt tcgtcgcttc tttcaaaacg tcgcgtggga gccgcggtac
     2101 acgctctgtc tcagcagcga agagtttctg aagcaggcca acaagtacgg actgaatttt
     2161 gaggcggatt ttctcgacta tcttcgcggt ctgtccttca aagagcggcg cgctttcgat
     2221 atggcgatgg gctatgtctt caacaaggtg tccgatctca acatcgacct gcccaaaagc
     2281 ggcctctacg tttttttgaa agcgtcgaat gcgccgctcg ggccttttta caacgagcac
     2341 cgtgatcgtc gcgcgctgca tccgacgaat ggacgcgtgg ggcagttcgc gtgtcttgat
     2401 cgaagcaccg caaccacatt tgacgatggc tggtacgagc caaacctttt gccgccgatc
     2461 gccagatgga tgagcaatcg gggacggatt cggtttcatg caccgaatct ttctgcgatc
     2521 agcattgatc taacgacaca catgcctgac ctgcgcatga agccactcgt gcttgagttt
     2581 atattgaacg gcgtagcact gtgcaggttc tcagttctca gcaactcgtg gctggacctg
     2641 cgcctcgcga tgcccgcgtc gttggcttct gaaaatgcgg aagacttcga gctggaaatc
     2701 cgcgccgatc gcacttggca accacgcccg acgaacgacg agacgcgcga cgaccgcgag
     2761 ctgtcgatcg ccgtgtgcaa catcgtcatt gaagaatgat tcgcaacgtt ctcatctgca
     2821 ccactcaggt tccgttcacc agcggcggag cagaatcgca cgtcgaaggg ttgcgtcgcg
     2881 cgctgatcga agcgggctat cgcgccgaga tcgtggcact gccattcaag tggtatccgc
     2941 cgacggagat catgcgcggc gcgatggcct ggcgtttggt tgacgtgacg gcggcaaacg
     3001 gaaagccggt cgatttggtt atcgggatga agtttcccgc ttacctcgca gcgcatgatc
     3061 gaaaggtgtt gtggatcatg caccagcacc gcgcggccta taatctttgg ggcacgcctt
     3121 tcgacgacct ttcaagttat cccgaaggag ttcgcgtgcg cgaatggatc caacacggcg
     3181 atcgcaattt catttctcaa gcaaagaaag tttttgcgaa ctcaaagacg gtcgccgaga
     3241 gattaaagcg ctacaacgac atcgatagcg aaccgcttta tcatccgccg ccgcttgccg
     3301 atcgacttcg aaccggagaa cggggcgact acattttcta tccgagccgc atcgagccac
     3361 aaaagcgtca ggatcttttg atcgaggcga tgcgtttcgt ccgcacaccg gtcaaagtgg
     3421 tattcgccgg cagcacagcc gacgcaaagc attatgattc tttgatcagg aagaacggcg
     3481 tcggcgatcg tgtggcgatg cgcggctttg tttcggacaa tgagttgatc gaactctatg
     3541 ccaacgcgct cggcgtttgc tatctgccct tcgatgaaga ttatggatac gtgacgctgg
     3601 aggcgatgct ttctggcaaa cctgtcatcg tggctcgcga tggtggcggc gcaacggagt
     3661 tcgtcgaaca tgactcagaa ggcttcatcg ttgaccccga gccgcaggca atcgccgatt
     3721 gtcttgatac gttgtacgca aatcgcgagc gagcaagcgc aatgggccgg cgcggtgaag
     3781 aaaaaataag agcgatgaat ctttcctggg atcaagttgt cagtcgattg atcagcgctg
     3841 cagagtagga ggaggatcaa tcttcgcttc tgcactcttt tcgccaggtt aaggttccca
     3901 ccgattgttg actcgcaaat actgagcaag ccgctggacg aggcgactaa gtggctcgac
     3961 gataagatta aacctcagaa gtgaaaccgc agccctcagc ggtgcacaat gaaagacaat
     4021 gaaaacacag caaacggtgt cccaggacga ttcatcaaag aggtcgccgt cgggttataa
     4081 tcgacgcaat gaaatgcttt gtgacagggg tgaacaaatg aaacggaaga ttcatcgtgg
     4141 cgcgtgccaa ctggttgctt tcactatggc tgcatcggtc ctcctaatgc cgctgtcggc
     4201 ttttgcgcaa acaaagatta gttatcacaa caacaaattc aaacccacag atgacgtgaa
     4261 gctgggtcgg caggcagcgg ctgaagctga acagcaattc cctttgctgc gcgattcgga
     4321 ggttaatgtt tacgtggaaa agatcgggca gcgtctggtg gcttcgattc cacttgaatt
     4381 tcggcatccc gagtttcgct actacttcaa agtgatcaat gcgagtgata tcaacgcgtt
     4441 cgctttgcca ggcggaccaa tgtacgtcaa tcgcggcatg atcgaagccg cgcgcaccga
     4501 aggcgagatg gccggcgtga tggcccacga gttgagccac gtcgcactgc gtcacggcac
     4561 cgcgcaggca accaaagctc agaagtacgc agtgggcgcg ggagttgcgg gaattctcgg
     4621 cacaattctg ggtggcccgg gactcgggca agttgctcaa gctccgtttg gtatttattt
     4681 cttgaagtac agtcgcgaat acgaaaccga agctgacctg ctgggcgcgc gaatcatggc
     4741 taacgcgggc tacgatccgc gcgatctggc aaacatgttc cgcacgatcg aagcgcaggg
     4801 cggcggcggc ggcggtggct tcctgagcga tcacccgagc ccggaaaatc gctacgcgcg
     4861 catcaatcag gaagcgcaat atctgcgcgt gaacaatccg attcgcgaca acacagaatt
     4921 caatcggatc aaagaacggt tgcgaggtta tccacgcgcg caatcgatgg ccgagattca
     4981 gcgcaacggc agacgccagg gcgataacaa tcccgaccag ggcaacaact acccgtccaa
     5041 tccgccgaga ggccgcgttg aaaatccgtc atcgcgcctt cgcgcttact ctgagtttgg
     5101 cgtgctgcgt gtgagtgttc cggacaattg gcgcgagctt tcagaccaag ggtcctcggt
     5161 ttggttcgct cccgaaggag cttatggcac gaccaacgga caggtcgttt acacgcatgg
     5221 cgtcaacatt ggcgccactc gaacgaacag tcgcaacctg cagcaggcga caaacgaatt
     5281 cgtgaatgct ttgcagcaag gtaataacaa cctgcgcgcg cgcagcaatt atcagcgcac
     5341 ttatgttgac ggccgcaacg cgttgtcgct tg
//
LOCUS       DASZZE010000224         1552 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_73509, whole genome shotgun sequence.
ACCESSION   DASZZE010000224 DASZZE010000000
VERSION     DASZZE010000224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1552)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1552)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1552
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_73509"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1365
                     /locus_tag="VHD88_04410"
     CDS             <1..1365
                     /locus_tag="VHD88_04410"
                     /EC_number="1.5.1.20"
                     /EC_number="2.1.1.10"
                     /inference="COORDINATES: protein motif:HMM:NF006396.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional homocysteine
                     S-methyltransferase/methylenetetrahydrofolate reductase"
                     /protein_id="HVS21064.1"
                     /translation="NTAYGTTPEAFTEQLDQSGADVIGLNCGVGPAIILAALEKMRGV
                     TDKKLSAQPNAGLPRDVQGRQFYMCSPEYMSKFTKRFIQAGAKFIGGCCGTTPSHIKF
                     ISDAVRAASPRSQRVFAPVSAPVHVDEQLAPPPDVQVMPPEERSQWSRKITLGEFVTS
                     VEVLPPKGCDSQKTLDSIRLLKDAGVDGVNIPDGARAQSRMSAMATAVLVEQQIGIES
                     VLHYCCRDRNLLGMVSDLLGAAALGLRNLLLITGDPPKMGPYPDATAVFDIDAIGLTN
                     MVNKLNHGVDIGGNPIGQPTSFCIGVGVNPGAINLDEEIKRFEWKVEAGAQYAITQPV
                     FDTDQLREFLERIEHCRIPIVAGIWPLVSFRNAEFLHNEVPGVRVTPSIMERMRAASA
                     ISKEAGRDEGLKIARESLLEVRDLIQGVQVSAPFGNVKYALEVFDALEDFGGRAHVEL
                     HAGD"
BASE COUNT          330 a          421 c          467 g          334 t
ORIGIN      
        1 aacacggcat acgggacaac tcctgaagcg ttcacagagc agcttgatca gagtggcgca
       61 gatgtaattg gtctgaattg cggagttggg ccggcgatca ttctcgcggc gctcgaaaag
      121 atgcgcggcg tcactgacaa gaagctttcc gcccaaccaa acgcgggctt gccgcgcgac
      181 gtgcaggggc ggcaattcta catgtgctcg ccagagtaca tgtcaaaatt caccaagcgc
      241 ttcattcaag cgggcgctaa attcatcggc ggctgttgcg gcaccacgcc ttcgcatatc
      301 aagttcatca gcgatgcagt gcgcgcagct tcgccgcgct cgcaacgcgt cttcgcgccg
      361 gtcagtgcgc cggtgcacgt tgatgaacag ctcgcgccgc cgcctgacgt tcaggttatg
      421 ccgccggaag aacgctcgca atggtcgcgc aagatcacgc tcggtgaatt tgtaacttcg
      481 gtcgaagtgc tgccgcctaa gggctgcgat tcgcaaaaga ctcttgactc gattcggctt
      541 ttgaaagacg ccggcgttga tggtgtgaac attcccgatg gcgcccgcgc gcagtcacgc
      601 atgagcgcga tggctacggc cgttttggtc gaacagcaga tcgggatcga gtcggtgctg
      661 cactactgtt gtcgcgatcg caatttgctc ggcatggttt cggatttgtt gggcgcggcg
      721 gcgctgggct tgcgcaactt acttttgatc accggcgacc caccgaagat ggggccgtat
      781 cccgacgcaa ccgccgtgtt cgacatcgac gcgattggct tgacgaacat ggtaaacaag
      841 ctgaaccacg gtgtggacat cggcggcaat ccgatcggcc agccgacgtc gttctgcatc
      901 ggtgtgggcg tgaatccggg agcaatcaat ctcgacgaag agatcaaacg cttcgaatgg
      961 aaggtcgaag ccggcgcgca gtacgcgatc acgcagccgg tgttcgatac agatcaacta
     1021 cgcgagtttc tggaacgcat cgagcattgc cgcattccga tagtcgcggg catctggcct
     1081 ttggtttcat ttcgcaatgc agagtttctg cacaacgaag ttcccggcgt gcgcgtgact
     1141 ccgtcgatca tggaacggat gcgcgccgct tcggccatca gcaaagaagc cggccgcgac
     1201 gaaggactaa agatcgcgcg tgagtctctg ttggaagtcc gcgacctaat tcaaggcgtg
     1261 caagtctccg cgccgttcgg taatgtgaag tatgcgctgg aagtttttga tgcgctggaa
     1321 gattttggag gaagggcgca cgtagaatta catgcgggcg attgacacgc gtgttcacct
     1381 agtttttctt ctcaactcgg ccagcctctt caatagtgct tctccgttga tgagttgaag
     1441 tcgagcgggg atgaactgag taactaaagg atcttctcca agcctcgggg caaagttgga
     1501 ggtggtcgta agaaagccct ttgatgcgcc atcgccgtgc agaacaccaa tc
//
LOCUS       DASZZE010000225         2712 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_104311, whole genome shotgun sequence.
ACCESSION   DASZZE010000225 DASZZE010000000
VERSION     DASZZE010000225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2712)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2712)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2712
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104311"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1208)
                     /gene="atpD"
                     /locus_tag="VHD88_04415"
     CDS             complement(<1..1208)
                     /gene="atpD"
                     /locus_tag="VHD88_04415"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HVS21065.1"
                     /translation="MATPSANGTNGHVGRVVQIIGPVVDVEFGESYLPPIYQALRITS
                     DGFEVPEPINVIAEVQQHLGERRVRAVSMLPTDGMVRGMKATDTGGPITVPVGEGTLG
                     RVMNVIGDPVDNLGAIPHKQRYPIHRHAPTFEEQSTELQMFETGIKVIDLIQPFVRGG
                     KIGLFGGAGVGKTVIVMEFINNIAKARSGFSVFAGVGERTREGNDLLREMVESEVIQF
                     GAEFNKNLHDTGAFDMTKVDMKAIEKSKVALIYGQMTEPPGARLRVALSGLTVAEYFR
                     DQGMDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPNLATEMGEMQERITSTKTGS
                     ITSIQAVYVPADDYTDPAPATTFAHLDAVTALSRQIVELGIYPAVDPLASSSRILDPR
                     IVGEDHYNTA"
     gene            complement(1386..1649)
                     /locus_tag="VHD88_04420"
     CDS             complement(1386..1649)
                     /locus_tag="VHD88_04420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21066.1"
                     /translation="MDEHTKQLAEEVGTAINESVQQSPSVAGAIERLREAGFEMELTL
                     RLEIGLRPQREDESNTESSGSLELTDEDMRVLRAMKIKIDPDE"
     gene            1826..>2712
                     /locus_tag="VHD88_04425"
     CDS             1826..>2712
                     /locus_tag="VHD88_04425"
                     /inference="COORDINATES: protein motif:HMM:TIGR00641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016866 - intramolecular transferase
                     activity [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
                     /protein_id="HVS21067.1"
                     /translation="MVVTTKAERREHFKTPSGIELPVDFNPSNTAAIGYDRDLGDPGQ
                     FPYTRGIRPNMYRGRLWTMRQYAGYASAEESNARYKYLLSQGTTGLSVAFDLPTQIGL
                     DSDDALAAGEVGKVGVAIDSLEDMLSLFDGIPLGEVSTSMTINATAAILLCLYLAVAR
                     KQGVAFEKVNGTLQNDILKEYIARGTYIFPPAPSLRLITDTFAFCARAAPNWNTISIS
                     GYHIREAGATAVQEVAFTIADAIAYVEAAIKAGLEIDDFAPRISFFFNAHNNLLEEIA
                     KFRAARRLWARIMRERFHAR"
BASE COUNT          557 a          816 c          726 g          613 t
ORIGIN      
        1 tgcgccgtgt tgtagtggtc ttcgcccacg atgcgcggat cgagaatgcg cgatgaagac
       61 gccagcggat cgactgccgg ataaattccc agttcgacga tctggcgcga cagcgcggtg
      121 acggcgtcca ggtgcgcgaa ggtcgtcgcg ggcgccggat cggtgtagtc gtctgccgga
      181 acataaacgg cctgaatcga tgtgatcgat ccggtcttgg tggaagtgat gcgctcttgc
      241 atctcgccca tctcagtggc gagattcggc tgataaccga ccgccgaagg catgcggccc
      301 agcagcgccg aaacctccga acctgcctgt gtaaaccgga aaatattgtc gataaagagc
      361 agcacgtcca taccctggtc gcggaaatat tcggcgacgg tcaggcccga gagggcgacg
      421 cgcagacgcg cccctggcgg ttccgtcatc tggccgtaga taagcgcgac ctttgatttc
      481 tcgatcgcct tcatatccac tttggtcatg tcgaaagcgc cggtgtcgtg caggttctta
      541 ttgaattcgg caccaaactg aatgacttct gattcgacca tctcgcgcag caggtcgtta
      601 ccttcgcgcg tgcgctcgcc cactccggcg aaaaccgaaa agccggaacg cgctttcgcg
      661 atgttgttga tgaactccat cacgatgacc gtcttgccta cacccgcgcc gccgaataaa
      721 ccaatcttgc cgccgcgaac gaacggttga atcagatcga tgaccttgat tcccgtctca
      781 aacatctgca gttcggtcga ttgctcttcg aatgttggcg cgtgccgatg aattggatac
      841 cgctgcttgt gcggaatcgc gccgaggttg tccaccgggt cgccgatcac gttcatgacg
      901 cggcccagcg tgccttcacc gacaggcaca gtgatgggtc cgccggtgtc ggtcgctttc
      961 atgccgcgca ccataccgtc ggtcggcagc atcgagaccg cacgcacacg gcgttcgccg
     1021 aggtgctgct gcacttcggc aatcacattg atgggctctg ggacctcgaa gccgtccgaa
     1081 gtaatccgca gcgcctgata gatcggcggc agatagctct cgccaaattc cacgtcaaca
     1141 actggtccga tgatttgcac gacacggcct acgtgtccgt tcgtgccgtt tgcgctaggc
     1201 gtagccataa ttcctcactc aactccttcg gattaatgcg aagcctttac aggcgaaaaa
     1261 ctggaaagat tttgaagagt tgagaagata gcatacggtt tcaggcttca ccaaacggcg
     1321 tcttagctgc gtggttctac aaatatgtcg cgcctatggt gcgaatccgt gctgatggct
     1381 ctccgttatt cgtccggatc aatcttaatc ttcatcgccc gcaacacgcg catgtcttca
     1441 tccgtcaact ccagggatcc cgaactctcg gtatttgatt cgtcttcacg ttgcggccgc
     1501 aatccaatct caagacgcaa cgtcagctcc atctcgaacc cggcttcgcg caggcgctcg
     1561 atcgcccccg ccacgctcgg cgattgctga actgattcgt taatggccgt gccgacttct
     1621 tcggctaact gctttgtgtg ctcatccatt tccaaagttt atcttcgtcc tcttatcaac
     1681 aagttgctct caatttgtca tgatgctaag ccactcgtgc agcatcgtca aacgcagcgt
     1741 cgtcgtcaac tagagagaat tgcggcgctt ccattcgtgt gctagccttc gactgcttag
     1801 tcaaagtaat ccaatcacgc acgccatggt cgtcacaacc aaagccgaac gccgcgaaca
     1861 cttcaaaact ccttcgggca tcgaactgcc cgtagatttc aatccgtcga acaccgcagc
     1921 gatcgggtac gaccgcgacc tcggcgatcc cggccagttt ccctacacac gcggcattcg
     1981 cccaaacatg tatcgcggtc gtttgtggac gatgcggcaa tacgcgggct atgcgtccgc
     2041 ggaagaatcc aacgcgcgct acaaatatct gctgtcgcaa ggcacgacgg gattgtcagt
     2101 cgccttcgat ttgccgactc agatcggctt ggattctgat gatgccttgg ccgcgggcga
     2161 agtcggcaaa gtcggcgtgg cgatcgactc gctcgaagac atgctctcgt tgttcgatgg
     2221 cattcctctt ggtgaagttt cgacttccat gacgatcaat gcgacggcag cgattctttt
     2281 gtgtctttat ctcgcggttg ccagaaagca aggcgtcgca ttcgaaaagg tcaacggcac
     2341 ccttcagaac gacatcctga aagagtacat cgcgcgtggc acgtacatct tcccgccggc
     2401 gccgtcgctg cgtttgatta ccgacacgtt cgccttttgc gcgcgcgcgg cgccgaactg
     2461 gaacacaatt tcgatcagcg gctatcacat tcgcgaggcc ggcgccaccg ccgttcagga
     2521 agtcgcattc accatcgccg atgcgattgc ctacgtcgaa gccgcaatca aagcgggttt
     2581 ggagatagat gactttgcgc cgcgaatctc gttcttcttc aacgcgcata acaacctttt
     2641 ggaagagatt gccaagtttc gcgccgcgcg ccgcctgtgg gcccgcatca tgcgcgagcg
     2701 ttttcacgcg cg
//
LOCUS       DASZZE010000226         6250 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_23771, whole genome shotgun sequence.
ACCESSION   DASZZE010000226 DASZZE010000000
VERSION     DASZZE010000226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6250)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6250)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6250
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23771"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..282
                     /locus_tag="VHD88_04430"
     CDS             <1..282
                     /locus_tag="VHD88_04430"
                     /inference="COORDINATES: protein motif:HMM:NF024591.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid--CoA ligase"
                     /protein_id="HVS21068.1"
                     /translation="VFVAPAEIENCLLQHEAVLECAVIGHDGGDGLVKPKAFVVARDD
                     HEPSEELADEIKQFVKTKLALYKYPRWIEFVDSLPKNDRGKLDRKLLRS"
     gene            468..1196
                     /locus_tag="VHD88_04435"
     CDS             468..1196
                     /locus_tag="VHD88_04435"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HVS21069.1"
                     /translation="MKRLVLLFAAAIVFGLPTAVSADVITFQAPSNAPNQGNGGPNQF
                     NLDHHDAYTWRIGGVDLTGKAITSATLTFHNISNWDRNPNMLFIHLLDTAKSFSTASG
                     TRSATVNGVTSFQDAPANQVPVTDINDDFAGTRYLNNPLVDANTANTFLTQQSFTTTP
                     GDFVYTFTADQLNILSAYFLNGSDIAFGFDPDCHFWNNGITFSFTTAPTATPEPATLA
                     LLGTGLAGLYYRRRRQQQKARLIN"
     gene            complement(1330..2745)
                     /locus_tag="VHD88_04440"
     CDS             complement(1330..2745)
                     /locus_tag="VHD88_04440"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HVS21070.1"
                     /translation="MNEQRDARLLIAEDEANLRLVLQKELQRLGYRVHAAPDGEAALR
                     KLEESNVDVLLCDINMPRMDGMELLRRIHERPNPPEVIMLTGQGTIETAVEAMKNGAY
                     DYLTKPYSINELDVRVRQAAEKRNLRVDNQRLRAQIERQSALPEIVSQSQAMREAIRL
                     VERVAPSEASVLITGESGTGKELIAQAIHRLSNRATGSFIDLNCAAFQETLLESELFG
                     YEAGAFSGAKARKLGLIELADSGTLFLDEVTELPASLQAKLLRAIETRTFFRVGGVRK
                     VEVNVRIVAATNRNLDSALSDGTFRADLLYRINSFQIHLAPLRERPEDVEPLTQHIMK
                     QLAGANCPEITAEVLDKLRAYSWPGNVRQLRNCLERAILLSNEGRITPSELPPEVARS
                     TNGAMPFSAVPVSSGATQMAAGSVDPSAPGSLREVEKQQIIAALEQTGWHRGKAAEML
                     GISPSTLYRRLRDYNLEGRLR"
     gene            complement(2799..4829)
                     /locus_tag="VHD88_04445"
     CDS             complement(2799..4829)
                     /locus_tag="VHD88_04445"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HVS21071.1"
                     /translation="MPAALNLETNSATLLIVDDDASARDGLRTVFESAGHRTITVGDA
                     PAALRLLRKEPFDLVMLDVELPEIDGLALCRLLRAQPGMNQLPVLVFSANDSEGRKVE
                     AFSAGADDYIVKPSTPGELLSRVNSHLSIAQRESDLIGSNHELRFLADLGRGLLRTLE
                     PEQVARCVAGATYEGTSAALCACAVKNNGKGLTVCVFDREGNAEGSALLRMDRLEEWL
                     ASPRSTLPALLTNSREFVLRDEQRETEYIVPIRFGGKNVGALVVAFGAREDYTEAQCR
                     LVDAAAQQAALAAHISSLYLGARESAATLAEEVDRRTVEAEMHERFTEAIIDSLPVSL
                     YAIDRDYQIVAWNRNRELGELGLPRGEALGRNVFDVLTKQSRELLQREFSKVFFTGEI
                     HRVEQETVTESGETKHWLISKIPMRADDGDQVSHVITVGENITSRVKADRAVARAEKL
                     AAVGRLAAGVVHEINNPLATIAACAESLEKRIKEGAFNDSPDAEDLREYLGLIRDEAF
                     RCKTITNGLLNFSRLRSGNRALVNVADLIKSAARLVTHQQRGENIQIVVEAADDLPGV
                     SADEGQLQQAVVALATNAIDAMPDGGTLTLRARRSGPRVLVEISDTGVGIPPENMTKI
                     FDPFFTTKDVGRGTGLGLAVCYGILSEHGGRLDVRSSLGAGTTFTITLPVGD"
     gene            complement(5018..>6250)
                     /locus_tag="VHD88_04450"
     CDS             complement(5018..>6250)
                     /locus_tag="VHD88_04450"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0052621 - diguanylate cyclase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor domain-containing diguanylate cyclase"
                     /protein_id="HVS21072.1"
                     /translation="HLPRFEMETAARGLEEPKPTTAPGNSIEPSDYDVALARENAPVT
                     AYDQIRDAHREVYALYEIARTFGSSLEVESTLSVLVDKVGHIAPFDTCVVYLYDDVKG
                     YASTALAVGLNADALRARCIAPGEGVTGFALANRRAVNRINPSLDFAGVTLPSEKDYR
                     SMASLPLFKDDLLLGALSVYSMSLREYSDDQIRLLETVTRLASDALANAVHHARAESN
                     ALTDSLTSLPNARGLHLRFEEEVARAGRTNRPFQVIMLDLDDFKLVNDTFGHKIGDRM
                     LREVASLVNDQLREYDFLARYAGDEFVALVPDMAGPQVEELRERIEKVVSAFSLDVRA
                     QTHARVGISVGSAVYGVDGETLDQLLVAADQAMYRAKSAHKTGPLGAAKFISSPAQSG
                     AEPVVENSPDVLITRAIN"
BASE COUNT         1312 a         1890 c         1730 g         1318 t
ORIGIN      
        1 gtcttcgtcg cgcccgccga aatcgaaaac tgtctgctgc aacacgaagc tgttcttgaa
       61 tgcgcagtca tcggtcatga tggaggcgac ggtctggtga aaccgaaagc gttcgtcgtc
      121 gcgcgcgacg accacgaacc gagcgaagaa ctcgcagacg aaatcaagca gttcgtcaaa
      181 acgaaactcg cgctgtacaa atatcctcgt tggattgaat tcgttgactc gcttccaaag
      241 aacgatcgcg gcaagctgga tcgcaaactc ctccgaagct agtccgcatt agccaccaat
      301 ctaaaggcaa gagatcggtc gcttgttcta cgaggattgc ctgccctgca ttttctcagt
      361 aagctcgcga aaaccgctaa agaacagcta tttttgtgga aatgtatacc cactaaccat
      421 ttcttttaag cgagtcgaag cagactttat tggagggaag atatctcgtg aaaaggttag
      481 ttctcttgtt cgcagcggcg atcgtttttg gtttgccaac ggcggtttca gccgacgtca
      541 tcacgtttca ggcgccgtcg aacgcgccga accagggaaa cggcggtccg aatcaattca
      601 atctggacca ccacgacgca tacacttggc gcatcggtgg cgttgatctg actggcaagg
      661 caatcacgag cgcgacgctc acgtttcaca acatcagcaa ctgggatcgc aatcccaaca
      721 tgctgttcat ccatctgctc gatacggcga agagtttctc gacggccagc ggcacgcgat
      781 cggcgaccgt gaatggcgtc acttcgtttc aagacgcgcc ggccaaccag gttccagtca
      841 ccgacatcaa cgacgacttt gcgggcacac gttacctcaa taacccacta gttgatgcca
      901 acaccgcgaa cacgtttcta acccagcaat cgtttacgac cacacccgga gattttgtct
      961 atacattcac ggccgaccag ttgaacattt tgagcgcgta ctttctgaac ggaagcgaca
     1021 tcgcgttcgg tttcgatcct gattgccact tctggaataa cggcatcacg ttcagcttca
     1081 ccactgcgcc gacagcgact cctgagccgg ctacgttggc cctgctcggt actgggttgg
     1141 ctggacttta ctatcgtcga agacgacagc aacagaaagc tcgcctgatt aactgaacat
     1201 cgctcgcgat ttgtccatag aaaagccgct gacagcaacg ctgtcggcgg ctttcttgtt
     1261 tttacggaac cgcttgcggt agcacgcggg tacccggtcg ctaccgctcc cggttcttta
     1321 acaactcgcc tatcgcaaac gtccttcgag attgtaatcg cgcagccggc gataaagtgt
     1381 cgagggcgag atgccgagca tctcagcagc cttaccgcga tgccagcccg tctgttcgag
     1441 cgctgcgatg atctgttgtt tctcaacttc gcgcagcgaa ccgggcgcag acggatcaac
     1501 ggaaccggca gccatctgag ttgcgcccga tgaaacaggc acggcggaga atggcatcgc
     1561 gccgttcgtg cttctggcaa cttctggcgg caattcgctc ggcgtaatgc gaccttcgtt
     1621 cgacaagaga atcgcgcgct caagacagtt gcgcagttgc cgcacgttgc cgggccaact
     1681 gtaggcgcgc agtttgtcga gcacctccgc ggtaatctcg ggacaatttg cgccggcgag
     1741 ttgtttcata atgtgctgcg tcagcggctc gacatcttcg ggacgttcgc gcaaaggcgc
     1801 cagatgaatc tgaaagctgt tgatccgata aagcagatcc gcgcggaacg ttccgtcgct
     1861 caacgctgaa tcgagattgc gattcgtcgc cgccacgatg cgcacgttga cttcgacttt
     1921 gcgcacgccg ccgacgcgga aaaaagtgcg cgtctcgatc gctcgcagca acttcgcttg
     1981 cagactcgcc ggcaactcgg ttacttcatc caaaaaaagc gtgccgctgt ccgccagttc
     2041 aatcagtccc agcttgcgcg ccttcgcgcc ggaaaacgcg ccggcttcat agccgaacag
     2101 ttccgactcc agcagtgtct cctggaacgc cgcgcagttc agatcgatga acgatccggt
     2161 ggcgcgattc gagagccgat gaatggcctg cgcaattaat tccttgcctg tgcctgattc
     2221 gccggtgatc agaacggaag cttcagatgg cgcgacgcgc tcgaccaggc gaatggcttc
     2281 gcgcatcgcc tgtgattggc tcacgatttc cggcaaagcg gattgtcgct cgatctgcgc
     2341 gcgcaatctt tggttgtcaa cgcgcagatt tcgtttttcc gcagcctggc gcacgcgcac
     2401 gtcgagttcg ttgatgctgt aaggcttggt gagataatcg tacgcgccgt tcttcattgc
     2461 ttcgacggcg gtttcgatcg tgccctggcc ggtgagcatg atcacttcgg gcgggttcgg
     2521 ccgctcgtga atgcggcgta agagttccat gccgtccatg cgaggcatgt tgatgtcgca
     2581 caaaagcaca tccacgttgc tttcttcgag cttgcgcaac gctgcttcgc cgtcgggcgc
     2641 agcatgcacg cgatagccga gtcgttgcag ctccttctgc aacaccagac gcagattggc
     2701 ttcgtcttcc gctatcagca gccgcgcatc acgctgttcg ttcacttggt ttgtactccg
     2761 cactcaaagg aaggtcggtt ccaatcactc gcccgaattt aatcgccaac gggcagcgtg
     2821 atcgtaaacg tcgtgccggc gcccaagctc gatcgcacat cgagacggcc accgtgctca
     2881 gataaaatac cataacagac ggccagcccc agcccggtgc cgcggcccac gtctttggtg
     2941 gtaaaaaacg gatcgaaaat cttcgtcatg ttctctggcg gaattcctac tcccgtgtcg
     3001 ctgatttcga ccaacacccg cgggccggac ctgcgcgccc gcaacgtcaa cgttccgcca
     3061 tccggcatcg cgtcgatcgc gttggtagcc agcgcaacga cggcttgctg caattgtcct
     3121 tcgtcggctg agacgccggg aagatcgtct gcggcctcaa cgacgatttg aatattctcg
     3181 ccacgctgtt gatgagttac gagtcgcgcc gctgacttga tcaagtccgc tacgtttacc
     3241 agcgcgcggt tccccgaacg caggcgactg aaattgagca gcccgttagt aatcgtcttg
     3301 cagcgaaacg cctcatcgcg aatcaggccg agatactcac gcaggtcttc cgcgtcgggc
     3361 gagtcgttga aggcgccttc tttgatccgc ttctccagcg actctgcgca ggcggcgatg
     3421 gttgccagcg gattgttgat ttcgtgcacg acgccggcag ccaagcggcc gacggcggcc
     3481 aatttttcag cgcgcgccac ggcgcgatcc gccttgacgc gtgatgtaat gttctcgcca
     3541 accgtgatta cgtgcgaaac ctgatcgcca tcatcggcgc gcatcggaat tttgctgatc
     3601 agccagtgtt tagtttcgcc gctttccgtc acggtttcct gttcgacgcg atggatctcg
     3661 ccggtaaaga aaaccttgct gaattcgcgc tggagcagtt cgcggctttg ctttgtcagc
     3721 acatcaaaaa cattgcgacc caacgcttcg ccgcgcggca aacccagctc gcccagttcg
     3781 cggttgcggt tccacgcgac aatctgataa tcgcgatcga tcgcgtaaag cgagaccggc
     3841 aaactgtcaa tgatcgcttc agtgaagcgc tcgtgcatct cagcctcgac ggtgcgacga
     3901 tcaacttctt cggccagggt agcagccgac tcgcgcgcgc cgagatacaa cgacgagatg
     3961 tgcgccgcca acgcggcttg ctgcgcggcc gcatcgacca agcggcattg cgcctctgtg
     4021 tagtcttcgc gagcaccgaa cgcaacaacc aatgcgccga cgttctttcc gccgaaacga
     4081 atcggtacga tgtactccgt ctcgcgttgt tcgtcgcgca gcacgaactc tctgctgttg
     4141 gtaagcaaag ccggcagcgt cgatcgcgga gacgcgagcc actcttctaa ccgatccatt
     4201 ctgagcaacg ctgagccttc cgcgtttcct tctcgatcga aaacacaaac ggtcaggcct
     4261 ttgccgttgt tcttcaccgc gcacgcgcac aacgcggcgc tggttccctc ataagttgct
     4321 ccggcaacgc aacgcgcaac ctgctcaggc tcaagcgtgc gcagcaagcc gcggccgagg
     4381 tcggcgagaa aacgcagctc gtggttgctg ccgatcagat ccgattcgcg ctgcgcgatg
     4441 ctcaagtgag aattgacgcg cgaaagcaat tcgccgggag tggaaggctt gacgatgtaa
     4501 tcgtccgcgc ccgcagagaa cgcttcgacc ttgcggcctt cgctgtcgtt cgcggaaaag
     4561 acgagcacag gcaactgatt catccctggt tgcgcacgca gcagacgaca aagcgcgagc
     4621 ccgtcaatct cgggaagctc gacgtcgagc atcaccaggt cgaacggctc tttacgaagc
     4681 agacgcagcg ctgccggcgc gtcgccaact gtgatcgtcc ggtgacccgc gctttcgaaa
     4741 actgtgcgca gtccatcgcg cgccgatgca tcgtcatcaa cgatgagcag cgtggcgctg
     4801 tttgtttcca gattaagagc agcaggcatc aatcttgatc gcggaaaacc gatttgtctg
     4861 aaccgcgaac ggttgcgagg taagcggggc gggtaagagt aacccgagtt gtcggtttgt
     4921 gcgacgcctc caccggcagg tgaatgtacc gccggcggac gcgctagtcc gcaccctgct
     4981 tccagattga aagatagggg ccgagttgtc aagaagttta attgattgct ctggttataa
     5041 ggacgtcagg actgttctca accaccggct ctgctccgct ctgcgcgggg ctggatatga
     5101 acttcgccgc acctaaaggc ccggttttgt gtgctgactt ggcacgatac atggcttgat
     5161 cggccgcgac cagaagctga tccagagtct cgccgtccac tccgtacacg gccgagccaa
     5221 cgctgatgcc gacgcgcgcg tgagtctgcg cgcgaacatc gagcgagaat gccgagacga
     5281 ccttctctat gcgttcgcgc agctcttcga cttgcggccc agccatgtca ggcacgagcg
     5341 caacgaactc atcgcccgcg taacgcgcca ggaaatcgta ctcgcgcagt tggtcgttaa
     5401 ccaggctcgc aacctcgcgc aacatccgat cgccgatttt gtgaccgaac gtgtcgttga
     5461 ccaatttgaa gtcgtcgagg tccagcatga ttacctggaa ggggcgatta gtgcgtcccg
     5521 ctcgcgcaac ctcttcttca aaacgcaggt gcaagccgcg cgcgtttggc aaactagtaa
     5581 gcgaatcagt cagcgcattt gattcggccc gcgcgtgatg caccgcattc gccagcgcgt
     5641 cggacgccag ccgcgtcacg gtttccagca aacgaatctg atcgtcgctg tattctctga
     5701 ggctcattga ataaaccgag agcgcgccca acaacaaatc gtctttgaac aacggcaacg
     5761 acgccatcga gcggtagtct ttctccgacg gaagcgtgac gccggcaaaa tcgagacttg
     5821 ggttaatgcg gttgactgcg cgccgattcg ccaacgcaaa tcccgtcacg ccttcgcccg
     5881 gggcgatgca cctggcgcgc aacgcgtcgg cgttcagacc cacggcgagc gcggtgctgg
     5941 cataaccctt cacatcgtcg tagagataaa caacacacgt atcgaagggc gcgatgtgtc
     6001 caaccttgtc cacgagcacc gacagcgtgc tctcgacttc gagcgacgag ccaaacgtgc
     6061 gcgcaatttc atagagcgca taaacctcgc ggtgcgcgtc gcgaatctga tcgtatgccg
     6121 tgactggggc gttttctctc gcgagcgcta catcataatc cgacggctca atcgagttgc
     6181 cgggagcagt tgtgggcttg ggctcctcga gtcctcgcgc cgcagtctcc atctcaaagc
     6241 gcggcagatg
//
LOCUS       DASZZE010000227         4151 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_89947, whole genome shotgun sequence.
ACCESSION   DASZZE010000227 DASZZE010000000
VERSION     DASZZE010000227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4151)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4151)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4151
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89947"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..348
                     /locus_tag="VHD88_04455"
     CDS             <1..348
                     /locus_tag="VHD88_04455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21073.1"
                     /translation="KNEKTGEMCFVTKKSNHFNNSPNSLAVSSDSTPLHRPIGLMRNQ
                     GSLLPKVGELASDEVGALKVREVSEIGFVRPGAAILHKLNDKCCDGNEEKDVNHTSLV
                     QQKLFRKPNCQQD"
     gene            complement(464..1069)
                     /locus_tag="VHD88_04460"
     CDS             complement(464..1069)
                     /locus_tag="VHD88_04460"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HVS21074.1"
                     /translation="MFCAGRVCVLVLTMVTILVGAIRMPAQTQLFPSQIQNNSQANST
                     VVHLHWGSRAGVSRYRLQLARDREFGDIVFDRVVNGNEFEIADLPPGRYFWRIAPLAA
                     MNAADGKIIWQAAAGADVGAVAFADVNGDGVLDVLMAGGETFAFALSGDDGSVVWKQD
                     EQSAMVANHAAAPTARSVVAVPFGSGILLIAGDTFRARVRG"
     gene            complement(1128..1850)
                     /locus_tag="VHD88_04465"
     CDS             complement(1128..1850)
                     /locus_tag="VHD88_04465"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HVS21075.1"
                     /translation="MDPQPANTTVKKLLIADDDAEMRALLAEYFRRLGFEVAEKENGP
                     AALQAATIDRFDCFILDVAMPEMSGLELLKKLRDRGIQTPALFLTAHDMLDDKVAGFE
                     AGADDYLAKPFSPRELEYRVEALLRRGQISPGSASDEDRMEIGDLVVDKRRHEISRGG
                     SRIDLTPLEFQILELLASEPGRAWSRNDLLDRVWSTEYEGYQRNIDPHINRLRKKLEA
                     DPKNPHYVLTVRGVGYKLNENP"
     gene            2066..3877
                     /locus_tag="VHD88_04470"
     CDS             2066..3877
                     /locus_tag="VHD88_04470"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HVS21076.1"
                     /translation="MRDLRRLLRYLLPHTGTFAIATFAMIVVAVLETATSALIVPIFD
                     QAFAHGSAHSTPTPFGLQRIIPASGLAAWRMIALLLVVFTVVKGVAEYFSTYLMAYIG
                     QSSILRLRQELYSHLLSQSAAFFERHRTNYLVSRLISSAAAIETAVTHTLRDMLREGF
                     TLIAFMAASFYVSWRLTLGSLLIAPPVAGLTMRFGRSLRKLARESFEGSKHLTDTAQE
                     ALANQSIVKAYRAEARERNRFTAVAHRVRRANLRSASISGMSPPIIELIGVLFIAALL
                     FFGEREVRLGRMDLAQFVLFLILLFRSYDPMRKLARLQNSMSQALAAARHVWEVMDEQ
                     AEIPERQNAVELAPLQREIEFREVRFGYENEGRAVLRGVSLVVPAGSMVALVGESGGG
                     KSTLTKLLPRFHDPTAGAVLWDGINLRDARVASLRRQMALVTQETVLFNDTVRYNISY
                     GKPEATDEQLHEAARTALAHDFIMELPHGYDTVIGERGTFLSGGQRQRLAIARAVLID
                     APVLVLDEATSALDAESEQLVQRAIANLIRDRTTIVIAHRLSTVRRADMIVVIERGQI
                     IEQGTHAELLARGGQYQRLYEMQFADEEEDELGSSER"
     gene            3951..>4151
                     /locus_tag="VHD88_04475"
     CDS             3951..>4151
                     /locus_tag="VHD88_04475"
                     /inference="COORDINATES: protein motif:HMM:NF015699.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YicC/YloC family endoribonuclease"
                     /protein_id="HVS21077.1"
                     /translation="MTGFGRGAASGEDFTVAVEIKTVNNRYLDVHFRVNQELSAFETN
                     IRRRVGSRLSRGRVDLNISYERT"
BASE COUNT          912 a         1205 c         1125 g          909 t
ORIGIN      
        1 aagaatgaaa agactggcga aatgtgcttt gtaaccaaga agtcgaatca tttcaacaac
       61 tccccaaaca gtcttgcggt ctcatcagat agcactccac tgcaccgtcc gattggattg
      121 atgcgcaatc aggggtcatt gttgccgaag gtcggcgaac tggcaagcga tgaagttggt
      181 gcgttgaaag tccgtgaggt ttcagagatc ggctttgtac gccctggtgc ggcaattctg
      241 cacaaactga acgacaaatg ctgcgatggc aatgaggaga aagacgtgaa tcatacctcc
      301 cttgtgcaac agaaactttt ccgtaaacca aactgccagc aagattgagc caatgagcca
      361 aagcatcgcg aaagatgttc ttcttcgaat cgagacttgt aaagcggcgc tgcgcactca
      421 gccgtctcag cgcgcgccgg gccgcacggc gcctttcgga aactcaaccg cgcacacgcg
      481 cgcggaaagt gtcgccggca atcaaaagta ttcctgagcc gaaaggcacg gcgactaccg
      541 agcgcgcggt cggcgccgcg gcgtgattcg cgaccatcgc gctctgttcg tcttgtttcc
      601 aaacgaccga gccgtcatct ccggacaacg cgaaagcaaa agtctctccg ccggccatca
      661 agacgtcaag cacgccatct ccgttaacgt cggcaaaggc caccgccccc acgtccgcac
      721 cggcagcggc ttgccaaata atcttaccgt cagccgcatt cattgccgcc agaggcgcga
      781 ttcgccagaa atatctgccc ggcggcaagt ctgcgatttc aaattcgttc ccgttgacaa
      841 cgcggtcgaa cacgatgtca ccaaattcgc ggtcgcgcgc caactgcaaa cgatatcgag
      901 atacgccagc gcgcgaaccc cagtgaagat ggaccacggt gctatttgcc tgcgaattat
      961 tttgaatctg tgatggaaag agttgagtct gggccggcat tcggatggcg ccgaccagaa
     1021 tcgtcaccat cgtcaaaacc aaaacacaga ctcggccagc gcaaaacatc tctggctaat
     1081 aataaatgac gaatcggcct gagttccctt ccggcttagg cgcgtcttca gggattctca
     1141 ttgagcttgt atccaacacc gcgcacggtc agcacgtaat gaggattttt cgggtcggct
     1201 tccagtttct ttcgcagacg attgatgtgc ggatcgatgt tccgttgata accttcgtac
     1261 tcagtgctcc aaacgcggtc gagcaaatcg tttcgcgacc acgcgcggcc cggctctgaa
     1321 gcgagcagct caagtatctg aaactcaagc ggagtaagat cgattctcga tccgcctcgg
     1381 gaaatttcgt ggcggcgctt atctaccacc agatccccaa tctccatgcg gtcctcatca
     1441 ctcgcggacc caggagagat ctggccgcga cgcaagagcg cctcgactcg gtactcgagt
     1501 tctcgcggac tgaatggttt cgccagataa tcatcggcgc ccgcttcgaa accagcgacc
     1561 ttgtcatcga gcatgtcgtg cgccgtcagg aagagcgccg gcgtttggat tccacggtcg
     1621 cgcaatttct tcagcagctc aaggccggac atttccggca tcgccacatc caggataaag
     1681 caatcaaagc gatcaatggt ggcggcttgc agcgcggccg gaccgttttc cttttccgca
     1741 acttcaaaac cgaggcgacg aaaatactcc gccagcaacg cgcgcatctc ggcgtcgtcg
     1801 tccgcaatca acagcttctt cacagtcgtg tttgcaggtt ggggatccac cgtgattttc
     1861 cttgtgcgtt cattcagcca aaccaatagc gcaagcggct cagccgaaag ccaacaatac
     1921 cctaaacctc tgaagcatcc ggggtttcgt cttagtatgg acaagccttt gccttgcgtc
     1981 aaacgtttag gctaagtata ttcgttaacg tattcgtgct tcgggcttcg gtttctctcc
     2041 gataacgatc cagacaccga ttgtaatgcg cgatctgcgg cggcttctaa gatatcttct
     2101 gcctcacacc ggcaccttcg ctattgccac tttcgcaatg atcgtcgtgg ccgtgttgga
     2161 aaccgcgacc agcgcgctga tagtgccaat cttcgatcaa gcgtttgccc acggcagcgc
     2221 gcactcgacg ccgacgcctt tcggattgca gcgaataatc ccggcgtcgg gtttggccgc
     2281 gtggcggatg atcgcgctgc tgctggttgt cttcacagtc gtcaagggcg tagccgaata
     2341 tttttccact tacttgatgg cctacattgg ccagtcttcg atcctgcgcc tgcgccagga
     2401 gctttacagc catcttcttt cccagtcggc ggcgttcttc gaacgtcacc gcaccaacta
     2461 tttggtctcg cgcttgattt ccagcgcggc agcgattgaa acagcggtga ctcacacgct
     2521 gcgcgacatg ttgcgcgaag gattcacttt gatcgccttt atggccgcgt ccttttatgt
     2581 gagctggaga ctgaccctcg gctcgctgct gattgctcca cccgtcgccg gattgacgat
     2641 gcgctttggc aggtctctgc gcaaattggc gcgcgaatct ttcgaaggca gcaaacatct
     2701 gacggacacg gcacaggaag cgctggccaa tcagagtatc gtcaaggcct accgagcgga
     2761 agcgcgcgaa cgaaatcgtt ttaccgcagt cgctcaccgc gtccggcggg ccaacctgcg
     2821 ctccgcaagt atctcgggta tgtcgccgcc aataatcgaa ttgatcggcg tccttttcat
     2881 cgccgcgttg ctcttctttg gcgagcgcga agtcagattg ggccggatgg atctggcgca
     2941 gtttgtcctc ttcctcatcc ttctgtttcg cagctacgat cccatgcgaa aacttgcgcg
     3001 actacaaaac tcgatgtcgc aggcgctggc cgccgcgcgt cacgtttggg aagtcatgga
     3061 cgagcaagcc gagattccgg aaagacaaaa tgccgtcgag ctggctccgc tgcagcgcga
     3121 aatcgaattt cgcgaagtgc gcttcggtta tgaaaatgaa ggacgcgccg ttttgcgtgg
     3181 cgtgagcctc gtcgttcccg caggcagcat ggttgcgctg gtcggcgagt caggcggcgg
     3241 aaaatcgacg ctgaccaagc tcctgccgcg ctttcacgat ccaactgccg gcgcggtgct
     3301 gtgggatggg atcaatctcc gcgatgcgcg cgttgccagt ttacgccgac agatggcgct
     3361 ggttactcag gaaaccgtgc tctttaacga cacggttcgc tacaacattt cttacggcaa
     3421 gccggaagca accgacgaac aactccatga agcggcgcgc acggcgctgg cgcatgattt
     3481 cataatggaa ttgccgcacg gatacgacac cgtgattggc gaacgcggaa ctttcttgtc
     3541 gggcggacaa agacaacggc tggcaatcgc ccgcgcggtt ttgattgacg ctcctgtgct
     3601 cgtgctcgac gaagcgacgt ctgcgctcga tgccgaatct gagcagttgg tacagcgcgc
     3661 catcgccaac ctgattcgcg accgcacgac aatcgtcatc gcgcatcgct tgtcaacggt
     3721 gcgccgcgcg gacatgatcg tggtcatcga gcgcggccag attatcgaac aaggcacaca
     3781 cgcagagttg cttgcgcgtg gtggtcaata tcagcggctg tacgaaatgc aatttgcaga
     3841 tgaggaagaa gacgaactcg ggagcagtga gcggtaagca tttatctttg aacgggcttt
     3901 tcagtttcta ttgacgattt acgattcact attaacgcct tatgaaatca atgaccggat
     3961 tcggccgcgg cgctgccagc ggcgaagact tcacagtcgc tgtcgagatt aagactgtga
     4021 acaaccgtta tctcgacgtt cactttcgcg tcaatcagga actctcggcg tttgagacga
     4081 acatcaggcg gcgcgtgggc tcgcgtcttt cgcgcggccg agtcgatctc aacatcagtt
     4141 atgagcgcac c
//
LOCUS       DASZZE010000228         2117 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_283167, whole genome shotgun sequence.
ACCESSION   DASZZE010000228 DASZZE010000000
VERSION     DASZZE010000228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2117)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2117)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2117
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_283167"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..231)
                     /locus_tag="VHD88_04480"
     CDS             complement(<1..231)
                     /locus_tag="VHD88_04480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21078.1"
                     /translation="MSTYAGFSPRPEPQLIATHKTKGAALAVSKALDRDRAVDESGNQ
                     IAVFGRRGARPFTFAETQRMLRTNEGRGEAFTV"
     gene            425..1333
                     /locus_tag="VHD88_04485"
     CDS             425..1333
                     /locus_tag="VHD88_04485"
                     /inference="COORDINATES: protein motif:HMM:NF018387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1175 family protein"
                     /protein_id="HVS21079.1"
                     /translation="MLIPTFQMRAPSKRWLAMASVLVISLATLAWSLRLLLPRAGDFG
                     GAKQKAGGRKQEAESQIVRAGDETVSPTEAQLVDADNDGIPDVAELRTFQDRDNFRRW
                     FTGVAEMQFYQLSDQWNAEQRDCAGMVRFAMREALRRHDRAWFQKMGQGYETVAPDVA
                     GFDLDHNPLGEKIFRTDYGSFHESDLRDGRISEFADGRALKNFNTAFVSRDRREAQPG
                     DLLFFYQPWVQKFPYHVMIFLGGPRVAANGAKDWVVYHTGSSPTDRGTVKKLELSVLD
                     HHPDPRWRPVESNRNFLGFYRLKILE"
     gene            1411..>2117
                     /locus_tag="VHD88_04490"
     CDS             1411..>2117
                     /locus_tag="VHD88_04490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21080.1"
                     /translation="MSDNNQRLRRYLATAAIYLAVAASVFGFNVIRSRAARQAAPPAT
                     PDQPTVVSTKPYFSLTTNRTYSPNETARLWASYQNIEYLDFRVYHVKDPSKFFKQLDD
                     PHQMGEKEKEAVSQGYGVRVSVLERAHSLKISLFSAVKDYVRTHLLKEHREVFNGKFR
                     KEDEPTRTPLNVADYARVPLLNPEQKVKDWREKLPALDHDYDSRMISLGKQDPGVYLI
                     EAVNGGMRAYSIAIVTNL"
BASE COUNT          455 a          615 c          608 g          439 t
ORIGIN      
        1 cacggtgaaa gcttcgcctc ggccttcatt cgtccgcagc atccgctgcg tttccgcaaa
       61 agtaaacggt cgcgctccgc gtcgaccgaa aacggcaatc tggttgccac tctcgtccac
      121 ggcgcgatcg cgatcgagcg ccttcgaaac ggccaacgcg gcgcccttcg ttttgtgtgt
      181 cgcgatcagt tgcggctcag gtcgcggact gaatcccgcg tacgttgaca tcgtctcagg
      241 tgaagtcagt tgcaaaatgc gcaaaccatt ctttccaatt gtgcgcagct tagcacgcta
      301 ctactgaggg aatccacact ctcccgcggc gtggcaatcc cgatgataac agtggttgac
      361 ctagcggata cgtgttagca tccgcgtaca cgacgattca attccaacgt aataattggc
      421 agcaatgctg atcccgacct ttcaaatgcg tgccccttcg aagcgctggt tggcgatggc
      481 gagcgtcctc gtaatttcgc tcgccacgct cgcgtggagt ctcaggcttt tgctgccgcg
      541 cgccggcgac ttcggagggg caaagcagaa ggcaggaggc agaaagcagg aggcagaaag
      601 ccagatcgtc cgagctggtg acgaaacggt ttcgcccacc gaggcacagt tggtcgacgc
      661 ggataacgac ggcattcccg acgttgccga gctgcgcacg tttcaggatc gcgacaactt
      721 tcgccgctgg ttcacgggcg tagccgagat gcagttctat cagttgagcg atcagtggaa
      781 cgcggagcag cgcgattgcg cgggcatggt gcggtttgcg atgcgcgaag cgttgcgccg
      841 acacgatcgc gcgtggtttc aaaagatggg ccagggctac gagacggtcg cgccggatgt
      901 tgccggtttc gatttggatc acaacccgct cggcgaaaag atctttcgca ccgattacgg
      961 atcgtttcat gaaagcgatc tgcgcgacgg caggatttca gagtttgccg atggccgcgc
     1021 gcttaagaat ttcaatacgg ctttcgtcag tcgagaccgt cgcgaagcgc aacccggcga
     1081 tcttcttttc ttttatcaac cctgggtgca aaaattccct tatcacgtaa tgatttttct
     1141 aggcgggccg cgcgtcgccg cgaacggcgc aaaggattgg gtcgtctatc acaccggctc
     1201 gtcaccgacg gatcgaggaa ctgtgaagaa gctcgagctg tcggtgctcg atcatcatcc
     1261 cgatccgcgc tggcgaccgg ttgagagcaa tcgcaatttt ctcgggtttt atcggctgaa
     1321 gattcttgag tagttacaga accgcttgcg gtagcaaacg ggcaaacgcc ggcaaagatg
     1381 ccggcgctcc aatcaggagg caaatcgatc gtgtctgaca ataaccaacg cttgcgccgc
     1441 tatcttgcga ccgcggccat ctatctcgca gtcgccgcat ccgtctttgg ctttaacgtg
     1501 attcgttcgc gcgccgcgcg acaggccgcg ccaccggcga cgccggatca gccgaccgtt
     1561 gtcagcacca agccatactt ctcgctgacg accaaccgca cctactcgcc gaacgaaacg
     1621 gcgcggctat gggccagcta tcaaaatatc gagtatctgg atttccgcgt ctatcacgtc
     1681 aaggacccgt cgaagttttt caagcaactc gacgacccgc accagatggg cgagaaagaa
     1741 aaggaagcgg tctcgcaggg ctatggcgtc cgcgtttctg tgcttgagcg cgcgcattcg
     1801 ctgaagattt cgctgttctc ggcggtcaaa gactacgtgc gcacgcacct gttgaaagag
     1861 catcgcgagg ttttcaacgg gaagtttcgc aaggaagatg aaccaacccg cacgcctttg
     1921 aatgtcgccg actacgcccg cgtgcctttg ctgaatcccg aacagaaagt caaggactgg
     1981 cgcgagaaac tgccggcgct ggatcacgac tacgacagcc gcatgatctc tctgggcaaa
     2041 caggatccgg gcgtctacct gatcgaagca gtcaacggcg gaatgcgcgc ctattcgatt
     2101 gcgatcgtca cgaacct
//
LOCUS       DASZZE010000229         2695 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_169506, whole genome shotgun sequence.
ACCESSION   DASZZE010000229 DASZZE010000000
VERSION     DASZZE010000229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2695
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_169506"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..827
                     /gene="selA"
                     /locus_tag="VHD88_04495"
     CDS             <1..827
                     /gene="selA"
                     /locus_tag="VHD88_04495"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004125 - L-seryl-tRNA(Sec) selenium
                     transferase activity [Evidence IEA];
                     GO_process: GO:0016260 - selenocysteine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HVS21081.1"
                     /translation="QSGTRMIEVGTTNRTRLSDYRKAISENTRLIMRVHTSNYRIVGF
                     AKTPSLSELTNLAHSAGLLLYEDAGSGALVDFTEHGITGEPLIRSSIADGADVVSFSG
                     DKLLGGPQAGLLVGRAEIVERMRSHPFYRALRADKLRIAALEATLDAYRRGASLNEVP
                     AHRSIAYTAAELKTRTNDLVARLRQRDIAQTVLLQIVEGESAVGGGAAPTSHLPTALI
                     SVTHGRLTANQIEAALRRSTPAIIARIEDNCVLLDLRTVAQGEESDLEQALLSLPT"
     gene            1010..>2695
                     /locus_tag="VHD88_04500"
     CDS             1010..>2695
                     /locus_tag="VHD88_04500"
                     /inference="COORDINATES: protein motif:HMM:NF024883.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HVS21082.1"
                     /translation="MKKFSWKSLFISLGLAFMAGVATCALWRAGLIDSLQSAFVVSVN
                     RGEVPLQSPQPWLGLLFIVAISTSAGFFVSRVGVRRSFLILGLGFLATCAVSLLASRY
                     LKVDILFAPMALGAIGAVFLVQLHRLWQIDTELTDHLNETASRTDKIEASPAQTRLMS
                     GLKLLHTILPLEESIVCQPNEDGRLVPCAHLRTSPSGSLDTSRNALWRKLIQVCDRAV
                     ETGEIARVRAGEIDELESVAIPLMHERRTVGALLLRLREGFDQSDRGLLSAVGGQLAR
                     NLQREDARKKKLDSNLPAFISARTSGHRLHAFDVISGVLTEHRFGAQVLAEASDGYAI
                     AYLDGTLGYVNPAMLLAARMKQTEAREADLFGLLDRFRSGVFDEPSIAVRRVLQSGEP
                     YERELKFPDRNQTLELRIALATERNGNEANGNGTVANPLCLAIRVRDVTRMKEFEQLK
                     SDMISLMSHELRTPLTSINGFAELLVIDDKIPEESREFLQIISNESQRMSRMIDTFLS
                     VTQLERADKKEVTKIALRLDEVARETMTTMQSVAKKKRIRLVEQSNGSIPPVAA"
BASE COUNT          566 a          776 c          769 g          584 t
ORIGIN      
        1 cgcagtcagg aacgcggatg atcgaagttg gcacgacgaa ccgcactcgc ctctcggact
       61 atcgcaaagc gatctccgag aacacgcgcc tgatcatgcg cgtgcacact tcgaattatc
      121 ggatcgttgg ttttgcgaag acgccgtcgc tttccgagct cacgaatctc gcgcacagtg
      181 ccgggctgct cttgtacgaa gatgcaggct ccggcgcgct cgtcgatttc actgagcatg
      241 gaataacggg cgagccctta attcgctctt ccatcgctga tggcgccgac gttgtttcgt
      301 tcagtggcga caaactgctc ggtgggccgc aagccggttt actggtcggt cgtgcggaga
      361 tcgtcgagcg aatgcgaagt catccgttct atcgcgcgct ccgagcggac aaactcagaa
      421 tcgcggcgct cgaagcaacc ctcgatgcat atcgccgcgg cgcttcactt aacgaagttc
      481 cggcgcatcg ttcaatcgca tacactgcgg ccgaactcaa aacgcgcacc aacgatcttg
      541 ttgctcgcct gcgccagcgg gatatcgctc agacagtgct gcttcagatc gtcgaaggcg
      601 agtcggcggt tggcggtggc gccgccccta cttcgcatct ccccacggcg ctgatttcgg
      661 tgactcatgg ccggctgaca gcgaatcaaa ttgaagctgc gctgcgtcgc tcgacgccgg
      721 cgataatcgc gaggattgag gacaactgtg tgcttttgga cttgcgaacc gtagcgcaag
      781 gcgaagaatc ggatcttgag caagcgctcc tttccttacc cacctgattt ccgtcacacc
      841 gagggaacca acgtttgggc cccaaaacag cgttttccca gaataatatc ctatttctct
      901 ggtgcaaaac agtgcctgac actgtataat ccccttgata tcatgggtct tgcctcccgc
      961 gcaggtcccg accgaatccg tattgcctcg cgacgatccc cgaagagtct tgaagaagtt
     1021 ctcctggaaa tcgctattca tatctcttgg actggctttc atggccggag tggcgacgtg
     1081 tgcattatgg cgggcgggac taattgactc tttgcaatca gcattcgtgg tgagcgtgaa
     1141 ccgcggcgaa gttccactcc agtcacctca gccatggctg ggcttgctgt tcattgtggc
     1201 gatcagtacc agcgccggat tctttgtcag ccgcgttggt gttcgccgct cattcctgat
     1261 tctcggcctg ggttttctgg caacgtgcgc ggtgagcctg ctcgcttcac gatatctcaa
     1321 agttgatatc ctgtttgcac ccatggccct gggcgcgatc ggcgcggtct ttctcgtcca
     1381 actccatcgg ctttggcaga tcgacacgga actcacagat catctcaatg agacggcttc
     1441 gaggacggat aaaatagagg caagtccggc gcagactcgg ctgatgagtg gactcaagct
     1501 tctgcataca attctgccgc tggaagaatc catcgtgtgc caaccgaatg aggacggacg
     1561 gctggtgccg tgtgctcatc tgcgcacaag tcccagcggt tctctggaca ccagccgcaa
     1621 tgccctctgg cgaaaactaa tccaagtctg tgatcgcgcc gttgaaacgg gcgagattgc
     1681 cagagttcgc gcgggcgaaa tcgacgaact ggaaagcgtc gccatcccgc taatgcatga
     1741 gcgacgcacg gtcggtgctt tgttgctgcg attgcgtgaa gggttcgatc aaagcgatcg
     1801 aggcttgctc tcagcagtcg gcggacaact cgcgcgcaac ctgcagcgag aagatgcgcg
     1861 caagaaaaaa ctcgacagca acctgccggc atttatttcg gcgcgcacgt ccgggcatcg
     1921 tctccacgct ttcgatgtca tcagcggagt cttgactgaa catcgatttg gcgcgcaggt
     1981 tttggccgaa gcgtctgacg gttacgccat cgcctacctc gacgggaccc ttggttacgt
     2041 caatccggcg atgctgctgg cggcgcgcat gaaacaaacc gaggcgcgag aggccgatct
     2101 gtttggtctg ttggatcggt ttcgttccgg agtcttcgac gagccttcga ttgccgtgcg
     2161 ccgtgtgctt cagtccggcg aaccttacga acgggaattg aagtttccgg atcgaaatca
     2221 aactctggaa ttgcggatcg cgctggccac agagcgcaac gggaatgaag cgaacggcaa
     2281 tggcaccgtg gcgaacccgc tgtgccttgc gattcgcgtg cgcgacgtga cgcggatgaa
     2341 agagttcgag cagttgaaga gcgacatgat ttcgctaatg tcgcacgagc tgcgaacgcc
     2401 gcttaccagc atcaacggct ttgccgaact gctggttatc gacgacaaga ttcccgaaga
     2461 gtcgcgcgag tttttgcaaa tcatctcgaa cgagtcgcag cgcatgtcgc gcatgatcga
     2521 cacgtttctc tcggtcactc agcttgaacg cgccgacaaa aaagaggtca cgaagatcgc
     2581 gctcaggctc gatgaagtcg cgcgcgaaac catgacgacg atgcagtcag tcgccaagaa
     2641 aaaacgcatt cgtctggtcg agcaaagcaa cggctccatc cctccggtcg cggcg
//
LOCUS       DASZZE010000230         2852 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_283333, whole genome shotgun sequence.
ACCESSION   DASZZE010000230 DASZZE010000000
VERSION     DASZZE010000230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2852)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2852)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2852
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_283333"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(186..1184)
                     /gene="ligD"
                     /locus_tag="VHD88_04505"
     CDS             complement(186..1184)
                     /gene="ligD"
                     /locus_tag="VHD88_04505"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF045432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-homologous end-joining DNA ligase"
                     /protein_id="HVS21083.1"
                     /translation="MTKTRSENHPSKRKPANEPGNGAARGRLEIPRNVNQLEVSFGDR
                     QVRLTNLNKLFWPELKITKRDLLQYYADVSSVLLPHVRDRAMVMKRYPNGAAGEFFFM
                     KRAPSPRPEWIEICRIQHGSKMVDFPMVQDLASLLWVINLGCIDLNQWYGRCDDVDRP
                     DYLHFDLDPVAGASFEQVRDIAMILRDALASLKMPCYAKTTGSRGIHVYVPIVRGPMQ
                     KEVWMFARELARVLQDAHPKLITTTYNVARRPKGSVLVDYNQNASGRTLASVYSVRPT
                     ATATVSTPVTWKEIEKGISIEDFRVDNVRGRIRRLGDLWQPLLDKRKRFRLDLYLK"
     gene            1509..>2852
                     /locus_tag="VHD88_04510"
     CDS             1509..>2852
                     /locus_tag="VHD88_04510"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HVS21084.1"
                     /translation="MAELEFFHPAVRRWFRKQFPAPTEPQARAWPAIKQRRHTLIAAP
                     TGSGKTLAAFLSAIDDLVWKAVDGKLVDETQVVYVSPLKALSNDIQINLQEPLRGIQE
                     ELEAGGIDAVQIRTLVRSGDTPASERTAMTKKPPHIVVTTPESLYILLTSEGGRRILS
                     TTRTLIVDEIHAIVDDKRGSHLSLSIERLQALVKEPLVRIGLSATQKPIEEVARFLVG
                     SANLEDDGTPRCTIIDTGHTRRLDLAIEIPGSPLEAVMSNEIWEEVYNRVAALIREHK
                     TTLVFVNTRRMAERVARHLGERLGDENVTAHHGSLARELRLSAEQRLKSGELSALVAT
                     ASLELGIDIGAVDLVIQIGSTRAISTLLQRIGRSNHTVSGFPKGRVFPLSRDELVECA
                     ALLDSVRRGELDHLVIPEQPLDILAQQIVAAVAPEEWTEDALFETILRAYPFRNLS"
BASE COUNT          623 a          826 c          795 g          608 t
ORIGIN      
        1 agatgtagcg cgaattagaa acttgcgcta ccttgaccgc tcgcggctgc gtaacaataa
       61 accttagccg tcaacgggcc gactgctgac ctatgggatt aattagcgct tacgcgtgaa
      121 atcgcagctt cagctacctc aagcaatctc tcagctagcc aagtcctgcc ctgcgcattc
      181 agacttcact tcaggtatag atcgagccga aaccgttttc gcttgtcgag caaaggctgc
      241 cacagatcgc cgagccttcg aattcggcct cgcacattgt cgacccgaaa gtcttcgatc
      301 gaaattccct tctctatttc tttccatgtc accggagttg acacggttgc tgtcgcggta
      361 ggcctcaccg aatagactga cgccagcgtc cgaccagaag cattttgatt gtagtcaacc
      421 aggacacttc ccttcggacg gcgcgccacg ttgtaggtcg tggtaattag tttcgggtga
      481 gcgtcctgga ggacacgcgc cagctcgcgc gcgaacatcc agacttcctt ctgcatagga
      541 ccgcggacga tcggaacgta gacgtgaatg ccgcgcgagc cggtcgtctt cgcgtagcac
      601 ggcatcttaa gcgaggccag tgcatcccgc agaatcattg cgatgtcacg gacctgttcg
      661 aatgatgcgc cggcaaccgg atccagatcg aagtgaagat agtccggccg atcgacatca
      721 tcgcagcggc cataccattg attcagatcg atgcagccga gattgatcac ccagagcagc
      781 gacgcgaggt cttgcaccat cgggaagtca accatcttcg agccgtgttg aatgcgacag
      841 atttcaatcc actccggtcg cggcgaaggc gcgcgcttca tgaaaaagaa ttcacccgcc
      901 gcgccgttcg gataacgctt catcaccatc gcgcggtccc gaacgtgcgg cagcagcaca
      961 gacgagacat ccgcgtagta ctgaagcaag tctcgcttgg taatcttcag ctcgggccag
     1021 aacagcttgt tcagattggt aagcctcacc tgccgatcac cgaaactaac ctcgagctgg
     1081 tttacgtttc gcgggatttc aaggcgaccg cgcgcagcgc cgttgccggg ttcgttcgct
     1141 ggtttgcgtt tggaagggtg gttttcgcta cgtgtctttg tcattgccta aatcaaaaac
     1201 caatccggat cggaggagtt tatcttttct ttggcacgaa agcatttgaa agctgtctgg
     1261 tagtgtctta gtttgatttc ctctctgcgt taactctccg ttctctgcgc ctcagcggtg
     1321 aatcctggcc gcgaaagagc tcaccgccgc agagacgcag aggccgcaga ggctgcgcag
     1381 agaaaaactg gaattgggcg actacgagat gacttcgaaa cttgaaacgg cccagcgaac
     1441 tcgttacgct agagtgcgcg tccccgtctt aacacggcgt tgcattcgtg gtacactggc
     1501 cgccctttat ggctgaactc gaattctttc atccggcggt tcgtcgatgg tttcggaagc
     1561 agttccctgc tccgaccgag ccgcaagcgc gcgcatggcc ggcgatcaag cagcgccgtc
     1621 acactttgat tgccgcgcca accgggtcgg gtaaaacgct cgccgcattt ctttcagcca
     1681 tcgatgacct ggtttggaaa gcagtcgacg gcaagctcgt tgacgaaacg caggtcgtgt
     1741 acgtctcacc gctgaaagct ctcagcaacg acattcagat caatttgcag gagcctttgc
     1801 gcggcattca ggaagaactc gaggcggggg gaattgacgc cgtacagatt cgcacgctcg
     1861 tgcgcagcgg cgacacgccc gcgagcgagc gcacggccat gacgaagaaa ccgccgcata
     1921 ttgtcgtcac cacgccggaa tctctctaca ttctgttgac cagcgaaggc ggccgccgga
     1981 ttctgagcac gacgcgaacg ctgatcgtcg acgaaattca cgcgatagtt gacgacaagc
     2041 gcggctcgca tctgtcgctg tccatcgaga gacttcaagc gctggtcaaa gagcctttgg
     2101 tgcgcattgg cctttcggca acgcagaaac cgatcgaaga agtagcgcgg tttctggtcg
     2161 ggtccgccaa ccttgaagac gacggcacgc cacgctgcac gatcatcgac accggacaca
     2221 cgcgccgact cgatctggcg atcgaaattc ccggttcacc cctcgaagcc gtgatgtcga
     2281 acgagatttg ggaagaagtc tacaaccgcg tggccgcgtt aatccgcgag cacaagacga
     2341 cactcgtttt cgtcaacaca cgccgcatgg ctgaacgggt ggcgcgacat ttgggcgaac
     2401 gcctcggcga cgaaaacgtc accgcgcatc atggcagtct ggcgcgcgaa ctaagattat
     2461 cggctgaaca gcgcctgaaa tcaggtgaac tgagcgcgct ggtggcgaca gcctcgctgg
     2521 aacttggtat cgacattggc gcggtcgatc tcgtcattca gattggatcg actcgcgcga
     2581 tctcaacctt acttcaacgc attggacgat cgaatcacac ggtcagtggg tttccgaagg
     2641 gtcgtgtgtt tccgctttcg cgcgacgaac tggttgaatg cgcggcgctg ctggattcag
     2701 ttcggcgcgg cgaactcgat catctggtga ttcccgagca gccactggat attctcgcgc
     2761 agcaaatcgt ggccgccgtt gcgcccgaag aatggacaga ggatgcgctg ttcgaaacga
     2821 ttctgcgcgc gtatcccttc aggaatcttt cg
//
LOCUS       DASZZE010000231         8098 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_204010, whole genome shotgun sequence.
ACCESSION   DASZZE010000231 DASZZE010000000
VERSION     DASZZE010000231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8098)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8098
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_204010"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2414)
                     /gene="bamA"
                     /locus_tag="VHD88_04515"
     CDS             complement(<1..2414)
                     /gene="bamA"
                     /locus_tag="VHD88_04515"
                     /inference="COORDINATES: protein motif:HMM:TIGR03303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HVS21085.1"
                     /translation="MHSYRVVWLAVLSVIIGTAVFFLAARARAQQPQQKLVESVDIQG
                     NRRLRKDDIIYYIQTRPGDTYNEAQVQRDLQALNALGFFDKTASKVAIGDGPRGGFEV
                     IFYVTELPIIRDIQFEGLHSVSESDVLKSFREKRVGVSKEAIYDPVKVNNAIRVMKEL
                     LAEKGHPNAIVAKSEEKVSATSIAITFQVTEGLRVRVAEIHFEGSKVFKSSKLRDHMK
                     YVKEAGLITRFRELDILNREKLDYDLHNVDNYMRSKGYLQARHGEPRIEGLGPRRTGF
                     PILPLPFISSIDDTLRITVPITDGRLYRVGDVKIEGNSIFSEQVIKAIVGLQKGEVAN
                     GEALSKALYENLKKYYGQQGFIQYTAEVTPTFKDSPQNPNEGIADFVITIDEGKQFTL
                     RRLEFTGNTFTRDNVLRREVLINEGDIYNQNTFEYSIIRLNQLGYFNPIDKDKDADYK
                     TNEEEGLVDVTVKVSEKGRQQISFNGGISGIGGSFFGLDYSTNNLFGRGEVLSINLAA
                     GNRQRSFQFSFTEPYIRNRPVTAGFSVFAYSQKFFGEGTFLSQNTAAQQGLLGGVLGS
                     LTTSEQNLFTRNSLGGSIFASAPLSEFYKKRPFTQFSRIGLSYQLAQSSVKDPAVNAT
                     GNTAQFIPVIYRQPKILTSRATATFAYDTRNASIDPTAGRSLSVAFAVAGFGGDVRTY
                     QPTLEFTQFYKMRKKRSANPEVFGFRILAGTVGSFATSSKVRNANSLAFVDGVPIYER
                     FFLGDEFTIRGYNVRSVSPVTPLDTFITSRNVVIATNPAGTPTPVPGLPTNLTSIGTF
                     TGPTGS"
     gene            complement(2661..5039)
                     /locus_tag="VHD88_04520"
     CDS             complement(2661..5039)
                     /locus_tag="VHD88_04520"
                     /inference="COORDINATES: protein motif:HMM:NF019344.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HVS21086.1"
                     /translation="MFERYTEKARRVIFFARYEASQFGAPAIEPEHLLLGLMREDKTL
                     TGRFFPRAQITIESIRREIESRTLLRERIPTSVELPLAPETKRVLHYSHEESDRLQHR
                     HIGTEHLLLGLLREERSMAAQILFERGLRLNAVRDEIARQTGADARHRKDIPHLLEFS
                     RDLTEDASNDRLDPLIGRDGEIERVVQILCRRTKNNPLLIGEPGVGKTAIVEGLAQRI
                     VRDEVPSFLEGKRILSLDISLIVAGTKYRGQFEERLKQIMRELIDNPQYIVFIDELHT
                     LVGAGSAEGSLDAANILKPALSRGEIQCIGATTPAEFRRSIEKDRSLERRFQAVKVAP
                     PTEDEAIEILGGVRERYESFHQVRYTDGALQAAVLQSSRYIPDRFLPDKAIDVIDEAG
                     ARVKLRVRAEQGNIDDLTASLTEWERATYGRAQAPITDEEDPIAMAEVTRDDVEEVIA
                     RWTGIPVTSLKEEESKKLLRIETELHKRVVSQRPAISALARAIRRSRAGLKNPHRPVG
                     SFLFLGATGVGKTEVARALAHFLFGSERSMIRFDMSEFMEKHSVSKLIGSPPGYVGHE
                     EGGQLTERVKRSPYSVLLFDEIEKAHTDIFNVLLQVFEDGILTDSLGNTIDFKNAIII
                     MTSNIGARFIQKKGTLGFQGSAEISRSKLEEMVMTAVRQTFNPEFINRLDEIIIFDEL
                     GDEDLFEVLQLQVDQINRTMVNHGFIVRLSDDAKRWILKRTCADRSYGARPLRRALQK
                     HVEDPLSEALIQGQLGDASLVEMFVDGDELNFRSIMIDEAGIEQPTDLLLTH"
     gene            complement(5735..6286)
                     /gene="tnpA"
                     /locus_tag="VHD88_04525"
     CDS             complement(5735..6286)
                     /gene="tnpA"
                     /locus_tag="VHD88_04525"
                     /inference="COORDINATES: protein motif:HMM:NF033573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
                     /protein_id="HVS21087.1"
                     /translation="MPDRTRWSERSVDHRNGNGRIIPAPWRGARRKAKLPWAQLFISL
                     HYQIVFSTKERRPLIRAEWRPRLHSYIGGIIRGMNGVAEIVSGVEDHVHLLASLRPVH
                     CIADVMRDLKKDSINWVKENFDRKFAWQEGYAAFTVSPSATEAVRNYIANQEAHHGKH
                     SFVDELKELLGKASVAYDEKYLL"
     gene            complement(6348..7985)
                     /locus_tag="VHD88_04530"
     CDS             complement(6348..7985)
                     /locus_tag="VHD88_04530"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HVS21088.1"
                     /translation="MDVASTSDASTVARLSTKAQVPSWSEEANSFKTFARAYRYWLPP
                     ALVSVALSFLFLNPFIGDWDGLDYTVFSLRGVPSSMALGRSLFTLFNHELYVIAHAIF
                     GVQPEQAYLLFKYAVVAQSPLTIIVCWILARDLTGSIRSATIASLLVAFSPMFVIYSG
                     QVMTDVPSVLVSVTALVIHLRGVQQRRVWLTLVGAALLGLGVNVRETVGLFLPWLVIA
                     PFVGGWKLDRRSIAVVMFLIVTFFVCAFGIFAFWFANDPAYRATWHVWLSSMQDESAR
                     HPVGIANVRPFLIYFFMAAPLAFVALPWAAWKEWRARGWSLLLSAACVGLFANAMLFF
                     NYSTTINWRYFLTGVPLLAPMVGDYFVRSQTEKLNNARRGFVTAVAGVVLVAGLMGLL
                     VRPASSEYFNHLALAKDYNARLQLMPRDAVVIAGAETVAVTYWRGIGAGQWDHIGVGA
                     GWPDGRLEAKIAEYLKSGRRVFLDTDPRWWQPCSWHVKEIVELAKIDSRFHFVRVAPT
                     IYEIRPAEDASANDQPHLEMLLPENRPEEVKKCFSAE"
BASE COUNT         1810 a         2303 c         2234 g         1751 t
ORIGIN      
        1 ttgctgcccg ttgggccggt gaaagtgccg atgctcgtca ggttagtcgg cagaccggga
       61 accggcgtcg gcgtccctgc cggattcgtg gcaatcacga cattccgaga tgtaatgaag
      121 gtgtcgagag gcgtgaccgg gctaaccgat cgaacgttat aaccgcgaat cgtgaactcg
      181 tcgccgagaa agaaacgttc gtagattggc actccgtcaa cgaaggctag cgaattcgcg
      241 ttccgcactt tcgacgaagt tgcgaagctg ccgaccgtgc cggcaagaat gcgaaagccg
      301 aaaacttcag ggttcgctga acgcttcttc cgcatcttgt aaaactgagt gaactcgagc
      361 gtcggttgat aagtgcgcac gtcgccgccg aatcccgcga cggcgaacgc caccgagagc
      421 gagcgcccgg ccgtcggatc gatactggca ttgcgggtgt cgtaagcgaa cgtggctgtg
      481 gctcgactgg tgagaatctt cggctgacga taaatcaccg gaatgaactg cgcagtgttg
      541 ccggtggcat tgacggcggg gtctttgacg cttgactgcg cgagctgata cgagagtcct
      601 atgcgcgaaa actgagtgaa gggccgcttt ttataaaact cagacagcgg cgcgctggcg
      661 aaaatcgatc cgccgagcga gttgcgcgtg aacaggttct gttcgctggt ggttaaggaa
      721 cccagcaccc cgcccagcag accctgctgc gccgcggtgt tctgcgaaag gaatgttcct
      781 tcgccaaaaa acttctgcga gtaagcgaac acggaaaagc cggcagtgac cgggcgattt
      841 cgaatgtagg gttcggtgaa cgaaaactgg aacgagcgct ggcgattgcc ggcggcgaga
      901 ttgatcgaga gcacttcgcc gcgtccgaac aaattgttcg tcgaataatc gagaccgaaa
      961 aacgatccgc cgatgcccga aattccgcca ttgaaggaaa tctgctggcg tcctttctcg
     1021 gagactttca cggtgacatc tacgaggcct tcttcttcgt tagtcttgta gtccgcgtct
     1081 ttgtccttgt cgatcggatt gaaatagccg agctgattca gtcggatgat cgaatactcg
     1141 aatgtgttct ggttgtagat gtcgccttca ttgatcagca cttcacggcg cagcacgttg
     1201 tcgcgagtaa acgtattgcc ggtaaattcc agacggcgca gggtgaattg tttgccctcg
     1261 tcgatcgtga tcacgaaatc agcaatgcct tcgttcggat tttgcggact gtctttgaaa
     1321 gtcggcgtta cttccgcagt gtactgaatg aaaccttgct ggccatagta cttcttgaga
     1381 ttctcgtaga gcgctttact tagcgcctca ccgttcgcga cttcaccttt ttgcaagcca
     1441 acaatggctt tgattacctg ctcagagaaa atcgagttgc cttcgatttt cacgtcaccg
     1501 acgcgataga gccggccgtc ggtaatcggc accgtgatgc gcagcgtgtc gtcaatcgaa
     1561 gaaataaatg gcagcggcag aattggaaag ccggtgcggc gcggacccag gccttcgatg
     1621 cgcggctcgc cgtggcgggc ctgcagatag cctttcgagc gcatgtagtt atcgacgttg
     1681 tgcagatcgt agtcgagctt ctctcgattg aggatgtcca gttcgcgaaa acgcgtgatc
     1741 agtccggcct ccttcacata cttcatgtga tcgcgcagct tgctgctctt gaaaactttg
     1801 ctgccttcaa agtgaatctc agcgacgcgg acgcgtaggc cttcggttac ctgaaaagtg
     1861 atcgcaatcg aggtagcgga aaccttctcc tcgcttttcg ccacgatcgc gttgggatgg
     1921 cctttctccg ccagcaattc cttcatcacg cgaatcgcgt tgttcacttt aaccggatca
     1981 taaatggcct ctttagagac gcccacacgc ttttcgcgaa aagacttcag cacatctgat
     2041 tcagagacgc tgtgcagacc ttcaaactga atgtcgcgaa tgatcggtag ttccgtgacg
     2101 tagaagatca cttcgaagcc gccgcgcgga ccatcaccaa tggctacctt ggatgccgtc
     2161 ttatcgaaga agccgagcgc attgagtgcc tgtagatcgc gctgaacctg ggcctcgttg
     2221 taggtgtcgc ccgggcgcgt ttgaatgtaa tagatgatgt cgtctttgcg gagacggcga
     2281 ttgccctgga tgtcgacgct ctcaaccaac ttctgttgtg gttgttgagc ccgcgcgcgc
     2341 gcagcgagga aaaatacagc ggtgccgatg atgacgctca gaacagcgag ccagacgacg
     2401 cgataagagt gcataagtgc cggttccctt agaggtctct ctgggacttc acaccgccta
     2461 tgaaaagtta agcgcttact tcagaaaaac cgtaacacaa acccggcgcg gctgcgctat
     2521 ctggggagca cttggattca ccgcggcctt cgcccgttgc cagtttccaa cttagcaaag
     2581 tggcgcatta tacagggaaa ataaaacgaa agtccaaagc gggctctgag actggaaact
     2641 tcggacttga gacctgaggc tcagtgagtc aagagtaaat cggttggctg ctcgattccg
     2701 gcttcgtcaa tcatgatcga gcggaagttc agttcgtcgc cgtccacgaa catctcgacc
     2761 agcgatgcgt cgcccagttg gccctgaatt agtgcttctg aaagaggatc ttcgacgtgc
     2821 ttttgcagcg cccggcgcag aggccgcgcg ccgtatgaac gatcggcaca ggtccgcttg
     2881 agaatccagc gcttcgcatc gtcggacagc cgcacgataa aaccgtggtt gaccatcgtt
     2941 cggttaatct gatcgacctg caattgcagg acttcaaata ggtcctcgtc gcccagttcg
     3001 tcaaagatga tgatctcgtc gagtcggttg atgaactccg gattgaaagt ctgccggacg
     3061 gcggtcatca ccatctcttc caacttgctg cgcgaaatct cggccgagcc ctgaaatccg
     3121 agtgttccct tcttctgaat gaagcgcgca ccgatgttcg aagtcatgat gatgatcgca
     3181 ttcttgaaat cgatcgtgtt gcccaacgag tcggtgagga tgccgtcttc gaaaacttgc
     3241 agcagcacgt tgaaaatgtc cgtgtgcgcc ttttcgatct cgtcaaacaa caagactgag
     3301 taaggcgaac gcttcacgcg ctcagtcaac tgcccacctt cttcgtgacc cacatagccc
     3361 ggcggcgaac cgatcagttt cgacaccgaa tgcttttcca tgaactcgga catgtcaaag
     3421 cgaatcatcg atcgttcgct gccgaacaga aagtgcgcca gcgcgcgggc cacttcggtt
     3481 ttgcctacgc cagtggcgcc gagaaaaagg aacgaaccaa ctggccggtg cgggtttttc
     3541 aagccggcac gcgagcggcg gatcgcgcgc gccagcgccg agattgccgg ccgctgcgac
     3601 accacccgtt tgtgcaactc ggtttcgatg cgcagcagct tcttggattc ttcttctttc
     3661 agcgaagtaa ccggaatgcc cgtccagcgc gcgatgactt cctcgacatc gtctctggtc
     3721 acttccgcca tcgcgattgg atcttcttca tcagtaatcg gcgcttgcgc gcggccataa
     3781 gttgcgcgtt cccactcagt cagcgacgcg gtcaaatcat cgatgttccc ttgctctgcg
     3841 cgcacgcgca gcttgacgcg cgcgccagcc tcgtcgatta cgtcgatcgc tttgtcgggc
     3901 aaaaatcgat cgggaatgta gcgactggat tgcaacacgg ccgcttgcag cgcgccatct
     3961 gtgtaccgca cctgatgaaa actctcgtag cgttcgcgca cgccgccgag aatctcgatc
     4021 gcctcgtctt ccgtcggcgg cgctactttc accgcctgaa agcgtcgctc gagcgaacga
     4081 tctttttcga tcgatcggcg aaattccgcg ggcgtcgttg cgcctatgca ctgaatctct
     4141 ccgcgtgaca gggcgggctt caaaatgtta gccgcgtcaa gcgagccttc ggccgaaccg
     4201 gcgccgacca aagtgtgcag ctcatcgata aagacgatgt actgcggatt gtcgatcagc
     4261 tcgcgcataa tttgtttcag gcgctcctcg aactggccgc gatatttcgt gccggcgaca
     4321 atcaaactga tgtcgagcga aagaatgcgc ttgccttcga gaaacgacgg cacttcgtcg
     4381 cgcacgatgc gctgcgcgag accttcgacg atcgctgtct tgccgacgcc gggctcgccg
     4441 atgagcaacg gattgttctt cgtgcggcga cagagaatct gcacgacgcg ctcgatttcg
     4501 ccgtcgcgac caatcagcgg atccagcctg tcgttggacg cgtcttcggt caggtcgcgc
     4561 gagaattcca aaaggtgcgg aatgtctttg cggtggcgcg catcagctcc cgtctggcgc
     4621 gcaatctcgt cgcgcacggc gttgagccgc aatccccgct cgaacagaat ctgcgcggcc
     4681 atcgaacgct cttcgcgtaa gagtccgagc agcagatgct cagtgccgat gtgccgatgc
     4741 tgtaaacgat ccgattcttc gtgcgagtaa tgcagcacgc gcttggtttc aggcgccagc
     4801 ggcaactcga cggaagttgg aatccgttca cgcaaaagcg tgcggctttc aatctctctc
     4861 ctgattgatt cgatcgtgat ctgcgcgcgc gggaaaaacc gcccggtgag cgtcttgtct
     4921 tcacgcatca aaccgagcag gagatgctcg ggttcgatcg ccggcgcgcc gaactgcgaa
     4981 gcttcgtaac gagcaaagaa aattacccgt cgcgcttttt cagtgtagcg ttcgaacatc
     5041 aggattctcg ttggctgtct atgattgcca cgcgtgttga caaatggtcg ccaacaccgc
     5101 gggcattata gcgcaagcag caagaggcaa gaagtccgtc gtctttggca ctgcaaccaa
     5161 ccagtgaagt acaacatccg cttcgttgag tttctggaag cgaatcatgc ccggggcgct
     5221 tatgtcgcgc tctgcgcacc tctccgtcag gttgaatgct cggacgagcg gcctcgccga
     5281 tttcaactat tcccctgcat attagccact tctagcgaat tgagttcgtt gctacggatc
     5341 tcgcaaatga gcgcaacgcc caagttcttt caaagttgga tcgcagaact gaaaggctgc
     5401 gaaagtcaag gtggccatga ctccccagtt ttcgttcccc cgacagaacg agtgctgcaa
     5461 gagacgccgc gcaaaagaaa ctcggggctg gccttatgaa agaccagcca ctcacaagga
     5521 aaatggatat gaaaagaaaa acacacgccc ccgtcgtaac gtggttcgtg acctcggctt
     5581 tgctggtttc gatgtgcgcc ggtctcactt tcagtcagcg cacctcggct cagtcaagtg
     5641 atcaaagcca accggacgcg cgcagccagg ccgaagacct ccggtaatcg tcgatgtccg
     5701 atcgcacccc ggaggggtgc cagaatgctc ggcgtcacaa gaggtacttc tcgtcatacg
     5761 ctacgcttgc tttaccaagc agttccttca gctcatcgac gaatgagtgc ttgccatggt
     5821 gcgcttcctg gttcgcgatg tagttccgca cggcttcagt ggccgaaggg ctcacggtga
     5881 acgccgcgta tccttcttgc caggcaaact ttcgatcgaa gttttctttt acccagttga
     5941 tggagtcctt cttcagatct cgcattacgt cggcaatgca gtgtactggc cgtaaactcg
     6001 cgagcaagtg gacgtgatcc tctacgccac tgacgatctc cgcaacgccg ttcattcccc
     6061 ttatgattcc gccgatataa gagtgcagtc gcggtcgcca ttcggcacgg atgagaggtc
     6121 ggcgctcctt ggttgaaaag acaatttgat aatgaaggct gataaaaagt tgagcccatg
     6181 ggagtttcgc ctttcttcta gcacccctcc agggtgctgg gattattctt ccatttccgt
     6241 tccggtggtc tacgctacgc tccgaccacc gggtacgatc tggcacaggc tgcgaatact
     6301 gagggcatca ttaatgaaaa tggttctcat tttgcagcac tcctcgatca ctccgcacta
     6361 aaacacttct taacttcttc gggtctgttc tcaggcaata acatttccag gtgaggttga
     6421 tcgttcgcgg acgcatcttc cgcgggacgg atttcataga ttgtcggcgc gactcggaca
     6481 aaatgaaagc gcgagtcgat cttagcaagc tcgacaatct ctttgacgtg ccacgaacac
     6541 ggctgccacc aacgcggatc ggtgtcgaga aaaacccgcc gccctgattt cagatactca
     6601 gcgatctttg cttccaatcg cccgtcgggc cagccggcgc caacgccaat gtggtcccac
     6661 tgaccggcgc cgatgccgcg ccagtaagta acggcgacag tttccgctcc ggcgattaca
     6721 acggcgtcac ggggcatcag ttgcagccgc gcgttgtaat ctttcgccag cgcgagatga
     6781 ttgaagtatt cgctgctcgc cggacgaacc aggagtccca tcaaaccggc aaccagaacc
     6841 acgccggcga ctgcggtgac gaaaccgcgt cgcgcgttgt ttagcttttc agtttgcgag
     6901 cgcacaaagt aatcgccgac catcggcgcc agcagtggca ctcctgtcaa aaaatatcgc
     6961 cagttgatcg tcgtgctgta gttgaaaaac agcatcgcat tcgcaaacaa accaacgcac
     7021 gcggcgctca gcaagagtga ccatccgcgc gcgcgccatt ctttccatgc cgcccaaggc
     7081 aatgccacaa aagcgagcgg cgccgccatg aagaaataga tcagaaaagg ccgcacgttc
     7141 gcgatgccga cggggtgtcg cgccgattcg tcctgcatcg atgaaagcca cacatgccag
     7201 gtcgcgcgat atgccggatc gttcgcaaac cagaacgcaa agatgccgaa cgcgcaaaca
     7261 aaaaaggtta cgatcaaaaa catcactact gcgatcgacc ggcgatccaa tttccatccg
     7321 ccgacgaacg gcgcgatgac cagccatgga agaaacaatc cgacggtctc acggacgttg
     7381 acacccaagc ccagcaatgc cgcgccgaca agcgtcaacc acacgcggcg ctgttgcact
     7441 cctcgcaaat gaatcaccaa cgcggtcacc gaaaccagaa ccgaaggcac atctgtcatc
     7501 acttgcccgc tgtagatcac aaacatcggc gagaaggcga cgagcaacga cgcgatcgtg
     7561 gccgaacgaa tcgagccggt gagatcgcgc gccaggatcc aacacacaat gatcgtcagc
     7621 gggctttgcg cgacgacggc atatttgaag aggaggtacg cttgttctgg ttggacgcca
     7681 aagatcgcgt gcgcgattac gtacagctca tgattgaaga gcgtgaacag cgatcgaccg
     7741 agcgccattg aggaaggcac cccgcgcaac gagaagaccg tgtaatcgag gccgtcccaa
     7801 tcgccaatga acgggttaag gaaaaggaaa ctcagcgcga cggataccaa cgccggcggc
     7861 aaccagtaac ggtaagcgcg agcgaacgtc ttgaaagagt tcgcctcttc gctccagctt
     7921 gggacctggg ctttcgttga gaggcgcgcg acagtcgaag cgtcgctcgt ggaagcaaca
     7981 tccatatcgt tcggagtaat cagttggcgg gcgcgttggt ttccggccgc ttgaccatct
     8041 tcaggcgcgt gccgcgttcg ctgtactcga cttcgtccat gatgttgtag atcagcag
//
LOCUS       DASZZE010000232         2289 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_121854, whole genome shotgun sequence.
ACCESSION   DASZZE010000232 DASZZE010000000
VERSION     DASZZE010000232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2289)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2289)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2289
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121854"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..668)
                     /locus_tag="VHD88_04535"
     CDS             complement(<1..668)
                     /locus_tag="VHD88_04535"
                     /inference="COORDINATES: protein motif:HMM:NF013714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HVS21089.1"
                     /translation="MLTKSQPDEIQAFLSDASYLQGGHASRVLFPETAEEVAEILAQA
                     TVDETPVTVSGAGTGTVAGRVPFGGIVIATDKLNRIKQIVHDDQGGGRAIAEAGVILR
                     DFQRAVESDGLLYPPDPTERSCFLGGTVATNASGARTFKYGPTRNYVERLKIALATGD
                     VIDLRRGQLHADARGRIKIPLDSSPAIEAQLPSYRMPQVRKHASGYYVTPEMDVLDLF
                     IGSEG"
     gene            complement(738..>2289)
                     /gene="uvrB"
                     /locus_tag="VHD88_04540"
     CDS             complement(738..>2289)
                     /gene="uvrB"
                     /locus_tag="VHD88_04540"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: protein motif:HMM:NF003673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HVS21090.1"
                     /translation="GDPDAYYGMLVFLEPGMKIARDTLLQRLVELQYERNDADFKRGS
                     FRVRGDVVEVYPSYQDEAYRIELWGDEIDSISTIDPLLGEVTQKHTARVPIYPKSHYV
                     MPRSTLKRAIKSIRQELEWWEPKLIEEGKLVEAQRLHQRTMFDMEMMKEMGFCRGIEN
                     YSRHLTGKKPGEPPPTLLDYLPRDTLVVIDESHQTIPQVRGMFFGDQSRKRTLVEYGF
                     RLPSALDNRPLNFDEFEERVVQRIYVSATPGPYELTKSSGEVIEQVIRPTGLMDPEVE
                     VRPVKGQIDHLLGECRTRAERKERVLVTTLTKKMSEDLTEYFTELDVRVRYLHSDIVT
                     LERIKILRDLRRGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSESSLIQTMG
                     RAARNAHGKAILYADRVTDSMKRAIDETRRRRALQEVYNREHGITPKTIIKPIESTLV
                     TAAEADYFKVPLDLEDVEGYTLEQIAESIARFEFEMREHAKRFEFEKAAELRDRIRYL
                     RERELQVA"
BASE COUNT          484 a          652 c          630 g          523 t
ORIGIN      
        1 ccctcgctgc cgatgaataa atcgagcaca tccatttccg gcgtgacgta ataacccgac
       61 gcgtgcttgc gcacttgagg catgcgatac gaaggaagct gcgcctcgat cgccgggctt
      121 gaatcaagcg gaatcttgat ccgacctcgt gcgtccgcgt gaagttgtcc gcgacgaaga
      181 tcgattacat cgccggtcgc caaggcaatc ttcagtcgct caacataatt tcgtgtcggg
      241 ccgtacttga aagttcgcgc gccggaggcg ttagtcgcga cagtgccgcc gagaaaacaa
      301 ctgcgctcgg tcggatcagg cggataaagc aaaccatcag attcaaccgc gcgttgaaag
      361 tcgcggagaa tcacgccggc ttcagcgatc gcgcgacctc cgccctggtc gtcgtgaacg
      421 atttgtttta tgcgatttag tttgtccgta gcgatgacaa tgccgccgaa tggaacacgg
      481 cccgcaactg ttcctgtgcc ggcgccggaa acggtgacgg gtgtttcgtc gaccgttgcc
      541 tgggcgagta tttcagcgac ttcttcggcg gtctctggaa ataatacgcg tgaagcgtgg
      601 ccgccctgaa ggtaactggc gtcggagaga aacgcctgta tttcgtccgg ttgtgatttc
      661 gtcagcataa tttgaaccac agaggataca gagggcgaag agggaatccc tccgtgccct
      721 ctgtcgttaa ttcttgttca cgcaacttgc agctcgcgct cgcgcagata ccttattcga
      781 tcccgaagct cagcggcctt ctcaaactca aaacgtttag catgctcgcg catctcgaat
      841 tcaaaacgcg caattgattc cgcgatctgc tcgagggtat agccttcgac gtcctcaaga
      901 tcaagcggca ctttgaaata gtcggcctcg gcggcagtta ccagcgtcga ctcgatgggt
      961 ttgattatcg tttttggcgt gatgccgtgc tcgcggttgt aaacttcctg cagcgcgcgg
     1021 cggcgacggg tttcatcaat cgcgcgtttc atcgaatcag ttacgcggtc ggcgtaaaga
     1081 atcgctttgc cgtgggcatt gcgcgcagcg cggcccatcg tttgaatcaa agacgattcg
     1141 gagcgcagga agccctcttt gtcagcatcc agaatcgcga ccagcgagac ctccggcaaa
     1201 tctaaccctt cgcgcagcag attgataccg actagtacgt cgaactcgcc gcgacgcagg
     1261 tcgcgcagaa tcttgatgcg ctccagcgtt acgatgtctg aatgaagata gcgcacgcgc
     1321 acgtcaagtt cagtgaagta ctccgtcagg tcttcggaca tcttcttggt aagcgtagtc
     1381 acgagcactc gctctttgcg ctcagcccgc gtgcggcatt caccgagcag atgatcgatt
     1441 tgccctttga ccggccttac ttcgacttcc ggatccatga gaccggtcgg gcgaatgact
     1501 tgttcgatca cttcgccgct tgatttcgtt agctcgtaag ggcccggcgt ggcggagaca
     1561 tagatcctct gaacaactcg ctcttcgaac tcgtcgaaat tcaaaggtcg attgtcgagc
     1621 gcggatggca gacgaaatcc gtattcaacc agcgtgcgtt tgcgcgattg atcgccaaag
     1681 aacattccgc ggacttgcgg aatcgtttga tgcgattcat cgatcacgac caaagtgtca
     1741 cgcggcagat aatcaagcag cgtcggcggt ggctcgccgg gtttcttgcc ggtgaggtgg
     1801 cgcgaatagt tctcgatgcc gcgacagaaa cccatctcct tcatcatctc catatcgaac
     1861 atcgtgcgct gatggagtcg ctgtgcctcg acgagttttc cttcttcgat cagcttcggc
     1921 tcccaccact ccagttcctg gcgaatagat ttaatcgcgc gcttgagcgt gctgcgcggc
     1981 atcacgtaat gcgacttcgg atagatgggc acgcgcgcgg tgtgcttttg ggtgacttcg
     2041 ccgagcagtg gatcgatcgt cgagatggaa tcaatctcat caccccaaag ctctatgcga
     2101 taagcctcgt cctgataact cggatagact tcgactacat cgccacgcac gcgaaaactg
     2161 ccgcgcttga agtcagcgtc gttgcgctcg tactgcaact cgaccaggcg ctgcagcaaa
     2221 gtgtcgcgcg cgatcttcat tcccggctcg agaaaaacca gcatcccata gtaggcgtcc
     2281 gggtccccg
//
LOCUS       DASZZE010000233         2225 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_317342, whole genome shotgun sequence.
ACCESSION   DASZZE010000233 DASZZE010000000
VERSION     DASZZE010000233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2225)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2225)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2225
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_317342"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1547
                     /locus_tag="VHD88_04545"
     CDS             <1..1547
                     /locus_tag="VHD88_04545"
                     /inference="COORDINATES: protein motif:HMM:NF016196.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF445 family protein"
                     /protein_id="HVS21091.1"
                     /translation="LHGYGAAWLAIWMLFHPYEPVKLFGITVWPQGMIPRHRERLAQS
                     IGNAVGNELVSQETVFDALFETGFFSRKVEGFVNSYTTELLSTVYPSLIEALPRGARA
                     PVLDTIAALQMRLAEHIASVLKSEQTAEAIEQFVDRKVDKLLEQRLNETVSEETFERI
                     LRFAEERFHGLVSEDGFETKVRGFVGERLDDLTRTDATLAQMFTAETVAVIKDRIDQQ
                     VEPIAHHLADLVTSKNTRMQIGGLIKREVDDYYQHLSFIKKIFISRERIYREVDDLVH
                     TTLPRRVEEYLRGSAFASEAAMFLNSTVDNFMARPLNEMVGQVSSDKFETIKHQAATR
                     LVAMAQSSEVQNSISTYLREALARLQPQTLRELLETLNPESAPRVKSFLANSLLTALA
                     RDDTARTINAILSSQIERFLVAPIGRLGDHMPAGAVEKASAALTEKITAAARERLPAA
                     IAEFDVGGLVRKKVSDYPLEKLEALVLLVAEHHLKTIELFGAVIGLWIGVGQAIYFWF
                     TYVPKH"
     gene            1752..2051
                     /locus_tag="VHD88_04550"
     CDS             1752..2051
                     /locus_tag="VHD88_04550"
                     /inference="COORDINATES: protein motif:HMM:NF024585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HVS21092.1"
                     /translation="MTYVVVEMCVDCKYTDCAAVCPVEAFHELPDRLYINAETCIDCD
                     ACVPECPVEAIFADTSVPEQYAHWTQINIDEAPNYPVISQKIPALHGEKCTGPAE"
BASE COUNT          527 a          579 c          616 g          503 t
ORIGIN      
        1 cgttgcacgg ttacggcgcg gcgtggttgg cgatctggat gctgtttcat ccttatgagc
       61 cggtgaaact ctttggcatc accgtctggc cgcagggaat gatcccgagg catcgcgaac
      121 gactggcgca atcgatcggc aacgccgtcg gcaacgaact cgtgtcgcag gaaactgtct
      181 ttgacgcgct ttttgaaact ggattcttca gccgcaaagt cgaaggtttt gttaattcgt
      241 acactacgga actgctttcc accgtgtacc catcgctgat cgaagcgcta cccaggggcg
      301 cgcgcgcgcc cgtgctcgac acgattgcgg cgttgcagat gcgcctcgca gagcacatcg
      361 cttcggtttt gaagagtgaa cagactgcgg aagcgatcga acagtttgtc gatcgaaagg
      421 ttgacaagct gctggaacag agactgaacg agaccgttag cgaagaaact ttcgaacgaa
      481 ttttgcgctt tgccgaagaa cgctttcatg gattggtgag cgaagacgga ttcgagacca
      541 aagtgcgtgg ctttgtcggc gagcggctcg atgatttgac gcgaaccgac gcgacgctgg
      601 ctcagatgtt caccgctgag acggttgccg tcatcaaaga ccggatcgat caacaggtgg
      661 aacccatcgc ccatcacctc gccgatctag tgaccagcaa gaacacgcgg atgcaaatcg
      721 gcgggctgat caagcgcgaa gttgacgact actatcaaca cctttcgttc atcaagaaga
      781 ttttcatttc gcgcgagcgc atctatcgcg aagttgacga cctggtccac acaaccctgc
      841 cgcgacgcgt cgaggagtat ctgcgcggta gcgcgttcgc ttctgaggcc gcgatgtttc
      901 tgaattcgac ggtcgataat ttcatggcgc ggcccctgaa cgaaatggtg ggccaggttt
      961 cgtccgacaa atttgagacg atcaaacatc aggcggcgac acgtttggtg gcgatggctc
     1021 agagttccga agtacagaat tccatctcaa cttatttgcg cgaagcgctc gcgcgtttgc
     1081 agccacagac gctgcgcgag ttgctggaga cgctgaatcc ggaatcagcg ccgcgtgtga
     1141 aaagctttct ggcgaacagt ttgctgaccg ctctcgctcg cgacgacacg gcgcgcacga
     1201 tcaacgcgat cttaagctca caaattgaaa gattcctggt agcgccgatc ggccggcttg
     1261 gcgatcacat gcccgcaggc gcggtcgaaa aagccagcgc tgcattgaca gaaaagatca
     1321 ctgcggctgc gcgcgagcgt ctgccggcag caattgccga gttcgatgtc ggcggactgg
     1381 tgcgcaagaa agtttccgat tatccattgg aaaagttgga agcgctggtc ctgttggttg
     1441 ccgaacatca cctgaaaacg atcgaattgt tcggcgcggt aattggatta tggatcggcg
     1501 taggacaggc gatctatttt tggtttactt acgttccgaa gcattaacgg cagggctaga
     1561 gactagaggt tagagacaag gaagttgtaa cgatctcttg attgaatttc gagagtcaca
     1621 aaaactgaaa tatcttacga atcatattga ccacgacgct tgcacaattt cttttctcgg
     1681 gtaaagattg ctattgacat tccgctcgat agataataaa caatgcactt cttgaaagga
     1741 gtcatccgcg aatgacctac gttgttgttg agatgtgtgt tgattgtaag tacaccgact
     1801 gcgccgcggt ttgtcctgtc gaggcttttc acgaactgcc tgatcgtctt tatattaacg
     1861 ccgagacttg cattgattgc gacgcgtgcg tgcccgagtg tccggtcgaa gcgatcttcg
     1921 ccgacaccag cgttcctgag caatatgcac actggacgca aatcaacatc gacgaagcgc
     1981 cgaactatcc cgtcattagt caaaagattc ccgcgctgca cggagagaaa tgcaccggac
     2041 cggctgaata gtttcctgac tccttaaaaa tcttcagggc gaagctcttc gaattcgcgc
     2101 aggacttgcc gggcttcctc agaagcatac tcgctcgcga gtctttccaa cgcaaaacgc
     2161 gcgacggccg catcgaccgg atcgcaaagc agcgccatta agaccggcgt tggcatttgc
     2221 gtcaa
//
LOCUS       DASZZE010000234         2741 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_121870, whole genome shotgun sequence.
ACCESSION   DASZZE010000234 DASZZE010000000
VERSION     DASZZE010000234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2741)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2741)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2741
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121870"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1560)
                     /locus_tag="VHD88_04555"
     CDS             complement(<1..1560)
                     /locus_tag="VHD88_04555"
                     /inference="COORDINATES: protein motif:HMM:NF014269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LON peptidase substrate-binding
                     domain-containing protein"
                     /protein_id="HVS21093.1"
                     /translation="MEEYSDRTPADIARYPMVPIRDVVIFPFTKVAFKIGRPGSVRAL
                     EMALASDRTIFLATQHDATVDEPAPEQIYSVGTIARILQSQRQENGQIKVVVEGRERA
                     TTVRVENNAGAFTALVRRAPTVNEEGTRTDALVQKISQLIEQHLRLAPEAQPDALQTA
                     MRNADPSHMADALASQLRISVEDKQGLLELFSAQARLARLTEILEIELEKRQLDRTIQ
                     TRVKRQMEKAQKEYYLNEQIKAIHKELGRKDERAELDELKKKIEDAGMTEEAKEKALQ
                     ELHRLEAMPPMSAEGTVSRTYIDWLLSVPWKQKSKEIRDLIKAEEVLNEDHYSLEKIK
                     DRILEYLAVRQLVKNPKGSILCFVGPPGVGKTSLGKSIARATGRKFVRLSLGGVRDEA
                     EIRGHRRTYIGALPGQIIQMMKKAGTVNPVLLLDEVDKLGTDFRGDPSSALLEVLDPE
                     QNHMFQDHYLDVEYDLSKVFFIATANVLHTIPPALQDRLEVLRLSGYTEREKLEIAKR
                     HLVPKQAEANGL"
     gene            complement(1802..>2741)
                     /gene="clpX"
                     /locus_tag="VHD88_04560"
     CDS             complement(1802..>2741)
                     /gene="clpX"
                     /locus_tag="VHD88_04560"
                     /inference="COORDINATES: protein motif:HMM:TIGR00382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HVS21094.1"
                     /translation="VEIQKSNIVLIGPTGTGKTLLAQTLARMLSVPFTIVDATTLTEA
                     GYVGEDVENIILKLLQAANGDVERAQQGIIYIDEIDKICRKDENPSITRDVSGEGVQQ
                     ALLKILEGTVANVPPQGGRKHPHQEFFPVDTTNILFICGGAFVGLEKVVERRLRNKSL
                     GFHAVVKTGSQRQADALAHVQPEDLIRYGLIPEFVGRLPVCGVLQELDEAALIKILTE
                     PKNALVKQYQKKFDFDNVKLRFTEDALRGVAAQALQRKVGARGLMMILEELLLDAMYT
                     LPSQKRVKEFVITSEMVERRRAMPGEGLAGVDDAAA"
BASE COUNT          531 a          799 c          757 g          654 t
ORIGIN      
        1 cagtccgttg gcttccgcct gtttcggcac gagatgtcgt ttggctattt ccagtttctc
       61 gcgctcggtg taaccggaga gccgcagcac ttcgagccga tcttgtagcg cgggtggaat
      121 cgtgtgcagc acgttcgccg tggcgatgaa gaacactttc gacaaatcgt attcgacgtc
      181 cagatagtga tcctggaaca tgtgattctg ttccggatcg agcacttcca acaaagccga
      241 gctcggatca ccgcgaaaat ccgtgcccag cttgtccact tcatcgagca gcagcaccgg
      301 gtttacagtg ccggctttct tcatcatctg aatgatctga cccggcaaag cgccgatgta
      361 cgtgcgacga tggccgcgaa tctcggcttc atcgcgcacg ccgcccagcg acaaacgcac
      421 aaactttcga cccgtagcgc gagcaatcga tttgccgaga ctggtcttgc caactcccgg
      481 aggaccaaca aaacagagaa tcgatccttt cggattcttt accagctgtc gcacggcgag
      541 atattcaaga atgcgatcct tgatcttttc caagctgtag tgatcttcgt tgagcacctc
      601 ttcggctttg atcaggtcgc gaatctcttt cgatttttgc ttccacggca cgctgagcag
      661 ccaatcgata tacgtgcgcg aaaccgtgcc ttcggcagac attggcggca tcgcttccag
      721 ccggtgcaat tcctgaagcg ctttttcctt cgcctcttcg gtcatgccgg cgtcttcgat
      781 cttctttttc agttcgtcca gctcggcacg ctcgtctttg cgccccaact ctttgtgaat
      841 cgctttgatt tgttcgttca ggtaatactc tttctgtgcc ttttccatct gccgcttgac
      901 gcgcgtctgg atcgtgcgat cgagctggcg cttctcaagc tcaatctcca gaatctcggt
      961 caagcgcgcg agtcgcgcct gcgccgagaa gagttcgagc aacccctgct tgtcttcgac
     1021 tgagatgcgc agttgcgaag cgagcgcgtc ggccatgtgc gacggatcag cgttgcgcat
     1081 tgccgtttgc agcgcgtccg gctgggcttc gggcgccaga cgcagatgct gctcgatcaa
     1141 ttgtgagatc ttctgcacca gcgcgtctgt gcgggtaccc tcttcgttta ccgtcggtgc
     1201 gcgccggacg agcgcggtga acgcgccggc gttattttcg acgcggacgg tcgtggcgcg
     1261 ttcgcgtcct tcgacgacca ccttgatctg gccgttctcc tgtctttgcg attgcaggat
     1321 gcgagcgatc gtgccgacgc tgtaaatttg ttcaggcgcc ggctcgtcaa ctgtggcgtc
     1381 gtgctgcgta gcgagaaaaa tcgtgcggtc ggacgcgagc gccatctcca gcgcgcgcac
     1441 cgaaccggga cggccaatct tgaacgcgac cttggtaaag ggaaagatta cgacgtcgcg
     1501 aatcggaacc atggggtaac gggcgatgtc ggctggggtg cggtctgaat attcttccat
     1561 gattatttaa tgccgaagtg caaaacctga gaatgaagac tcctgaaaat tgtttcgggt
     1621 caactaaatt aaacgacgaa tcaagctgct ctcgcaaatt accaggctcg ccgtcgttgg
     1681 ctgcgaagaa gggcgagtcg ccctttgtcg cctcgccctt ttcgtagctg cgctgattgt
     1741 aaactatttg ctgcgaactc gctactggcc gattgcgcgt gaaattcttt cccgaaaggg
     1801 actaggccgc tgcgtcatcc acgccggcca gaccctcgcc cggcattgcg cggcggcgct
     1861 cgaccatttc gctggtgatg acgaattctt tcacgcgctt ttgcgaaggc agcgtgtaca
     1921 ttgcgtcgag caaaagctct tcgaggatca tcatcaagcc gcgcgcgccg actttgcgtt
     1981 gcaacgcctg agccgccacg ccacgcagcg cgtcttcggt aaaccgcagc ttaacattgt
     2041 cgaagtcgaa cttcttctga tactgcttga cgagcgcatt ctttggctcg gtgagaattt
     2101 tgatcagcgc ggcttcatcc agctcctgca gcacgccgca aaccggcaag cgtcccacga
     2161 attccggaat caatccgtag cgaatcagat cttccggctg gacatgagcg agcgcgtcgg
     2221 cctgacgctg tgagcctgtc ttcactacgg catgaaagcc gagcgacttg ttgcgcaagc
     2281 ggcgctcgac gaccttttcc aatccgacga acgcaccgcc acagatgaac agaatgttcg
     2341 tggtgtcaac agggaagaat tcctggtgcg gatgcttacg tccgccttgc ggcggaacat
     2401 tcgcaacggt gccttccagg attttcagaa gcgcttgctg cacgccttca cccgaaacgt
     2461 cgcgggtgat cgaagggttt tcatccttgc ggcaaatctt gtcgatctcg tcgatgtaga
     2521 taatgccctg ctgcgcgcgt tcgacatcgc cgttggcggc ctgcaaaagc ttgagaataa
     2581 tgttctcgac gtcttcaccg acatagccgg cttcggtcaa cgtcgtcgca tcgacgatgg
     2641 tgaaggggac gctcaacatg cgcgcgagcg tctgcgccag cagcgtcttg ccggtgcccg
     2701 tcggaccgat gagcacgatg tttgattttt gaatctcaac a
//
LOCUS       DASZZE010000235         1754 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_135709, whole genome shotgun sequence.
ACCESSION   DASZZE010000235 DASZZE010000000
VERSION     DASZZE010000235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1754)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1754)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1754
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_135709"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..391)
                     /locus_tag="VHD88_04565"
     CDS             complement(<1..391)
                     /locus_tag="VHD88_04565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21095.1"
                     /translation="MPVRTNRSLVSLCKKVFGLALGVCIALTAQAGAHSSTPIFQSNE
                     GVRFELPANGNLRVENLRGGVIADLWSENYVSVSAITDTGQASRSPAVIQRTDSLLSV
                     RVARGSVGAPRINLELRIPARAHVAIVT"
     gene            complement(476..1684)
                     /locus_tag="VHD88_04570"
     CDS             complement(476..1684)
                     /locus_tag="VHD88_04570"
                     /inference="COORDINATES: protein motif:HMM:TIGR01420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilT/PilU family type 4a pilus ATPase"
                     /protein_id="HVS21096.1"
                     /translation="MNAIQEPPTEEASTAASLNLATVLQQMLAVSDKVSDLIFSPGRP
                     PQIELVGKLQPVPIAGVEKLSPAQTSDIAKLIIGNHESPAESLEKLGSADLSFSVPGL
                     SRFRVNIFKQRGTYAIVMRVIPPRPPRFEDFDLPNQLREIVEIKNGIVLVTGPTGSGK
                     SSTLAAVIDLINETKFYHIVTIEDPIEFLHMHKNSTIHQRELHSDTPDFALALRAALR
                     QAPKVILVGEMRDRETIEVALEAAETGHLVLSTLHTIDAAKSVERIIGVFPKNEEQSI
                     RTRLSQTFRYIISQRLLPRADGNGRVAAIEILKATSRTREYIERGESEGKSLTDAMEQ
                     GETEGMQTFDGQLEQMIRSGIVTKDDALAYASNSGNLLLRLGEYGGGTAAPKREAEPK
                     GDSILDTIER"
BASE COUNT          356 a          481 c          499 g          418 t
ORIGIN      
        1 cggtgacgat cgcgacgtgc gcgcgcgcgg gaatccttaa ctcgagattg atgcgaggcg
       61 cgccgaccga gccacgcgct acgcgcacgg aaagcaagct atcagttcgc tgaatgacag
      121 caggcgagcg gctcgcttgc ccggtgtcag taatcgccga aaccgaaacg taattctcac
      181 tccaaagatc ggcgatcact ccgccacgca gattttcgac gcgcaggttg ccgttagcgg
      241 gaagctcaaa gcgtacgcct tcgttcgact gaaaaattgg agttgaactg tgcgcgccgg
      301 cttgagcagt gagagcaatg caaactccga gcgcaaggcc gaatactttt ttgcaaaggg
      361 agacgagaga acgattggtt cgcactggca tgaactctat tctttcgtcg tttggtcgca
      421 cagactcaag tctgtgattc ttatccagtt gagcacagac taaagtctgg gccgcttacc
      481 gttcaatcgt atccagtatc gagtcgcctt tgggttccgc ttcgcgcttt ggcgccgcgg
      541 ttccaccgcc atactcgccc agccgcaaga gcagattgcc cgagttcgac gcgtatgcca
      601 acgcatcatc tttggtaacg atcccggatc gaatcatttg ctcgagttga ccgtcgaacg
      661 tttgcatccc ttcggtttcg ccctgttcca tcgcgtccgt cagcgacttc ccttccgact
      721 cgccgcgttc gatgtattcc ctcgtgcgcg acgttgcttt cagaatctcg atcgcggcga
      781 cgcggccgtt cccatcggcg cgcggcaaaa gacgctgcga aatgatgtaa cggaaggtct
      841 gcgacagacg cgtgcgaatc gattgctctt cgttctttgg aaagacgccg atgatgcgct
      901 cgacgctttt cgcggcatcg atcgtgtgca gtgtcgagag cacgagatgc cctgtttcgg
      961 cggcttccaa cgccacttcg atcgtctcgc gatcgcgcat ctcgccgacc agaattacct
     1021 ttggcgcttg gcgcaaagcg gcgcgaagtg ccagcgcaaa gtccggcgtg tcagagtgca
     1081 gctcgcgttg atgaatggtc gagttcttgt gcatgtgcag aaactcgatt gggtcttcga
     1141 tcgtgactat gtgatagaac ttggtttcat tgatcaagtc gatcacggcc gccagcgtcg
     1201 aactcttgcc actgccggtc ggtccggtaa ccagcacgat gccgtttttt atttcgacta
     1261 tttcgcgcaa ctgatttggc aaatcaaagt cttcgaagcg tggcgggcgc ggtggaatca
     1321 cgcgcatcac gatcgcgtac gtgccgcgct gtttgaagat gttgacgcga aaacgactga
     1381 gaccgggaac gctgaatgag agatcggcag agccgagttt ttccaaactc tctgccgggc
     1441 tttcatgatt gccgatgatg agttttgcga tgtcggaggt ttgcgccggc gaaagttttt
     1501 cgactcccgc aatcgggacg ggttgaagct tgcctacgag ttcgatctgt ggcgggcgtc
     1561 ccggcgagaa aattagatca ctgactttgt ctgaaacggc gagcatctgc tgcaacacag
     1621 ttgccagatt cagcgacgcc gcggtcgacg cttcttcggt cggtggttct tgaatagcat
     1681 tcattggatg tctttgtacg attcgggatt tccagagtta gtcacccacc cgctaacgca
     1741 ggtggtactg actt
//
LOCUS       DASZZE010000236         2369 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_151754, whole genome shotgun sequence.
ACCESSION   DASZZE010000236 DASZZE010000000
VERSION     DASZZE010000236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2369)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2369)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2369
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151754"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1365
                     /locus_tag="VHD88_04575"
     CDS             <1..1365
                     /locus_tag="VHD88_04575"
                     /inference="COORDINATES: protein motif:HMM:TIGR02669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SpoIID/LytB domain-containing protein"
                     /protein_id="HVS21097.1"
                     /translation="LALPDGRASDTMILAVRATEGQVLTDGRGQPADAYFGASCGGET
                     ANIAALWGTKPSQYLAGVRDEYCVAGPHAHWTDAITRADLLRALQSDVRTDVGARLDQ
                     VIVSKRDETGRAEFITIEGERRKTIRGWDFKIIVGRVLGWNLLKSSRFEVARAGSNFI
                     FHGSGFGHGLGLCQEGAHVMAQRGSGYQRILEKYFPGTSVRKGDRFASSLSGNERWDL
                     NAEDAKDFAKNAEENLCEPLRNPLRPLRLNAVFANHSRGTSTEKKTLSSEHFRVTYPA
                     DVDRRDANLVLNTLESARSDFLHRASAASLSTDVPTLEIRINASTGDFTSRTGQPWWA
                     AAATKGNRIELQPVGVLKRRGSLTTTLRHELAHVVIDAVSHNRAPRWLGEGFAIYLAG
                     EGPMFARYATKTKLSPDEIEKRLQRPGSQPEMRMLYSLAYNQVFELIRAGTEASVWKK
                     LAAS"
     gene            complement(1375..1983)
                     /locus_tag="VHD88_04580"
     CDS             complement(1375..1983)
                     /locus_tag="VHD88_04580"
                     /EC_number="3.2.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF002003.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003905 - alkylbase DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase"
                     /protein_id="HVS21098.1"
                     /translation="MKRLPREFYTRKNVLEVARDLLGKKLVVPSKNGSRVAGLIVETE
                     SYRGPEDRASHAYNGRRTQRTETMYGIGGTAYVYFVYGMYNQFNVVTNVEDVPHAVLV
                     RAVEPVEGLDIIRRQRRGRPEYELTSGPGRLCLALGIDRRLDKADLLGDRVWIEAGVS
                     VSPSQIARGPRIGIAYAEEWVAKPWRFWIRDNPFVSKPNNAR"
     gene            complement(2120..>2369)
                     /locus_tag="VHD88_04585"
     CDS             complement(2120..>2369)
                     /locus_tag="VHD88_04585"
                     /inference="COORDINATES: protein motif:HMM:NF014035.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HVS21099.1"
                     /translation="HDIHRANGIKNFLGICINGVAVFSFSIAHMVSWPRALPMAVAAT
                     IGGYVGARTARRVGRTFIRRAIVVIGFAITIVMLWRMR"
BASE COUNT          520 a          691 c          679 g          479 t
ORIGIN      
        1 ctggccctcc ctgacggtcg ggcttctgac acgatgatcc tggccgttcg agcaactgaa
       61 ggccaggtct taacggacgg tcgcggccaa ccggccgacg catatttcgg cgcatcatgt
      121 ggcggtgaaa ccgcgaacat cgccgcgctc tggggcacga agccatctca gtatttggcc
      181 ggcgtgcgcg acgagtactg cgttgccggc ccgcatgcac actggactga tgcgatcacc
      241 cgggcggatt tgctgcgggc gctgcagagc gacgtgcgca cggatgtcgg cgccagactc
      301 gatcaagtaa tcgtcagtaa gcgcgacgaa acgggtcgcg ctgaattcat tacgatcgag
      361 ggcgaacgcc gcaagactat tcgcggctgg gatttcaaga ttatcgtcgg gcgcgtgctg
      421 ggatggaacc tgctgaagag ttcgcgcttc gaagtcgctc gcgccggatc taacttcatc
      481 tttcacggca gcggctttgg ccacggtctc ggcctttgtc aggaaggcgc gcacgtgatg
      541 gcccagcggg ggtcaggcta ccaacggatt ctggagaaat attttccagg gacgagcgtc
      601 agaaaaggag atcgcttcgc gagtagcttg agtggaaacg aacgttggga tctaaacgca
      661 gaggacgcaa aggatttcgc aaagaacgcc gaggaaaacc tttgcgaacc tctgcgaaac
      721 cctctgcgtc ctctgcggtt gaacgccgtc ttcgcgaatc actcacgcgg aacctccacc
      781 gagaagaaga ccctctcaag cgaacacttc cgcgtcacct atcccgccga cgtcgatcgc
      841 cgcgacgcta atctggtttt gaatactttg gaatccgcgc gctccgattt cctgcaccga
      901 gcatccgctg cctcgctttc gaccgatgtt ccgacgctcg aaatccgcat caatgcgagc
      961 acgggggatt ttacttcgcg caccggccaa ccatggtggg ccgcagcagc tacgaaagga
     1021 aatcgcatcg aactgcaacc ggtcggcgtg ctgaagcgtc gcggatcgct tacgactacg
     1081 ttgcgccacg aactagcgca cgtggtgatt gatgcagtca gtcacaaccg cgcgccgcgc
     1141 tggcttggtg aaggcttcgc gatctatttg gccggtgaag ggccgatgtt cgctcgctac
     1201 gcaacgaaaa cgaagctgtc gccggacgag atcgagaagc ggttgcaacg gccaggttcg
     1261 cagccagaga tgcgcatgct ttactccctt gcatacaacc aagtgtttga gcttattcga
     1321 gcaggaactg aagcgagcgt gtggaagaag ttggccgcga gttaagattc taagttagcg
     1381 cgcgttgttt ggcttgctca cgaacggatt atcacgaatc cagaaccgcc acggcttcgc
     1441 gacccactct tccgcataag caattccgat tcgcggcccg cgtgcgatct ggcttggtga
     1501 gactgaaacg cctgcttcga tccaaactcg atcgcccaac agatcggcct tatcaagtct
     1561 gcgatcgatt cccagcgcca gacacaaacg acccggcccg ctggtcagct catattccgg
     1621 tcgtcctcgt cgctggcgtc gaatgatgtc caatccttcg accggctcaa ccgcgcgcac
     1681 cagcaccgcg tgcggcacgt cttcgacatt cgtcacgaca ttgaactggt tgtacatgcc
     1741 atagacgaaa tagacgtaag cagtgccgcc gatgccgtac atcgtctcgg tgcgctgcgt
     1801 gcggcggcca ttgtaagcgt gcgaggcccg gtcttccggc ccgcgatagc tttcggtttc
     1861 cacgatgagg cccgcgacgc gcgaaccgtt cttactcgga acgaccaact tctttccgag
     1921 cagatcgcga gcgacttcga gtacgttttt gcgcgtgtag aattcgcggg gaagtctttt
     1981 cattagttac aacaaacgac gatgtgatcc acagattacg cagattgcgc agattacaag
     2041 cagcgagcga gcccgtaaaa gatcgagatg agcatttgtt tctaagaatc tgtgtaatct
     2101 gcgaaatctg tggatgaagt cacctcatcc gccacaacat tacaatcgtg atcgcgaatc
     2161 cgatcacgac aatcgcgcgg cgaatgaacg tgcggccgac gcgtcgcgcc gtgcgggcac
     2221 caacgtagcc gccgatggtc gccgccaccg ccatcggcaa agctcttggc catgaaacca
     2281 tgtgggcgat cgaaaaactg aagaccgcaa cgccgttgat acagatgccc agaaaattct
     2341 tgatgccgtt ggcgcgatga atgtcgtgt
//
LOCUS       DASZZE010000237         4212 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_122008, whole genome shotgun sequence.
ACCESSION   DASZZE010000237 DASZZE010000000
VERSION     DASZZE010000237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4212)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4212)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4212
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122008"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1024
                     /gene="fabF"
                     /locus_tag="VHD88_04590"
     CDS             <1..1024
                     /gene="fabF"
                     /locus_tag="VHD88_04590"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: protein motif:HMM:NF005589.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HVS21100.1"
                     /translation="IHYAVAASQEAVDDSGLKITDDVAEGVGTYISSGIGDFWAIERE
                     HEKLLKDGPGRVSPFFIPSAIVNLASGQVSIRHNAKGPNSATATACSAGAHAIGDSFK
                     IIQRGDAEAMICGGAESAITPMSVAGFAALRALSTRNDDPVHASRPFDLERDGFVIGE
                     GAGIVILEELEFARRRGARIYAEVVGYGMTGDAFHITMPDATGSGAVRVMEKALKDAK
                     VEPEEVGYINAHGTSTPYNDRFETMAIKKTFGEHAYKVPISSTKSMTGHLLGAAGGVE
                     AVFSILGIVQNMLPPTINYVTPDPECDLDYIPNEARAAKINYALSNSFGFGGTNAALL
                     FKRYEE"
     gene            1122..1895
                     /locus_tag="VHD88_04595"
     CDS             1122..1895
                     /locus_tag="VHD88_04595"
                     /inference="COORDINATES: protein motif:HMM:NF013200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HVS21101.1"
                     /translation="MKILVLMKQVANKDAILRINKDSTWIEEADLSFEVNESDGYALE
                     ESLRIKEKVGGEVVVCSMGPPRAKSVIKDALARGADRAIHILGDNVGHLSPFAAASVL
                     AEAIKDEQADLIMTGLQSDDYGYAQTGVILAEILGLPQATIVIEIDATGEQLRVKREL
                     ESGWYQWYTMPKPALLTIQSGISQIRYATLKGIMAAKKKEIREVAPAADIVNKPSHQR
                     IEKIYLPQKSKQTQLLGGGDAKKGAVEFAEKLRTEARVI"
     gene            2057..3037
                     /locus_tag="VHD88_04600"
     CDS             2057..3037
                     /locus_tag="VHD88_04600"
                     /inference="COORDINATES: protein motif:HMM:NF013200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HVS21102.1"
                     /translation="MSSGILVFIEHKAGVLNKTSLEAIAAAQKLAGEISQTVWAIVLG
                     SGAQSLAQEIAAYDLSKVVYVDHPRLADYTPDAYAAAMDQVVRATDPQYVIMAHTYLA
                     RDFAPKVAARFGKGLIGDCIRMNVDGSKVVFTRRIFLGKLDADVVSDGASPVFVTFQS
                     GAFRGDQAVTGNGAPVETMNVEPGEIRMKPEAPFQEVKQAVDLTKANIIVAVGRGIKS
                     KDNIALAEKLAEVLGADLAASRPICDAEWLPIDRQIGSSGQTVAPKLYVAIGISGAIQ
                     HLVGMKNSGTIVAINKDPEAPIFDVADYGIVGDLFEVLPVLTEEIRKLKA"
     gene            3255..3929
                     /locus_tag="VHD88_04605"
     CDS             3255..3929
                     /locus_tag="VHD88_04605"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HVS21103.1"
                     /translation="MLVIEDDDKIASFIVNGLKQAGFATDHSANGEDGLHRASTEHYD
                     AAVVDLMLPRLDGLSLIEKLRRQEINTPVIILSAKRSVDDRVKGLQAGGDDYMVKPFA
                     FSELLARVQALLRRATGSVAAEPTRITVGDLCMNLLSREVVRAGEGIDLQAREFALLE
                     YLMRNAGRVVSKTMILEHVWDYSFDPQTNVVDVLICRLRNKVDKSFTEKMLHTIRGVG
                     YVLKVS"
     gene            3910..>4212
                     /locus_tag="VHD88_04610"
     CDS             3910..>4212
                     /locus_tag="VHD88_04610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21104.1"
                     /translation="MFLKYLSPKHIVRLRKTITFRLILWYSAFFIFSTSFLFLLAYFL
                     LSSSVRQKDREETHQKLGEYAAQYQTGGIEALKNEVGLEGRSAKENPFFVRVAGPHN"
BASE COUNT          989 a         1100 c         1217 g          906 t
ORIGIN      
        1 catccattac gccgtcgctg cctcgcagga ggcggtggac gatagcggcc tgaagataac
       61 cgacgacgta gcggaaggcg tcggcaccta catcagcagt ggcatcggcg atttctgggc
      121 gatcgagcgc gagcacgaaa agctcttgaa agacggccca ggccgcgtat cccctttctt
      181 cattccatcg gccatcgtca acctcgcttc cggacaggtt tctattcggc ataacgcgaa
      241 ggggccgaat tcagcaaccg ccacagcgtg ctcggcgggc gcgcacgcga tcggcgatag
      301 cttcaaaata attcagcgcg gcgacgctga agcgatgatt tgtggtggcg ctgaatcggc
      361 catcacgccg atgagcgttg ccggctttgc ggcgttacgc gcgctttcca cccgcaacga
      421 cgatccggtt cacgcgtccc gacctttcga tttggaacgc gacggattcg tgatcggcga
      481 aggcgcaggg atcgtaatcc tggaagaact tgagttcgct cggcgtcgtg gcgcgcgcat
      541 ctacgcggag gttgtgggct acggcatgac aggcgacgcg tttcacatca cgatgcctga
      601 cgccacaggc tcgggcgcgg tgcgcgtgat ggagaaagcg ctgaaggatg cgaaggttga
      661 accggaagaa gtcggctata tcaacgctca cggaacctcc acgccctaca acgacagatt
      721 cgagacgatg gcgatcaaga agacgttcgg cgagcacgca tacaaggtgc ctatcagctc
      781 aaccaagtcg atgacgggac atctgttggg cgcggcgggc ggcgtcgaag cggtcttctc
      841 gatcttaggt attgttcaaa acatgttgcc gccgactatc aactacgtca cgccggatcc
      901 ggaatgcgat ctcgactata ttccaaacga ggcgcgtgca gccaagatta actatgcttt
      961 gtcgaacagt tttgggttcg gtggcacgaa tgcggcgtta ttgttcaagc ggtacgaaga
     1021 ataggaagag caggagccag aagtcagaat tcagaaggga atgacttcac ggctttcttc
     1081 tgaattctga ctcctgactt ctgacttccc aaacattggt tatgaagata ctggttttga
     1141 tgaagcaggt cgccaacaag gacgcgatcc tgcgaatcaa taaagactca acctggatcg
     1201 aagaagccga cctctcgttt gaagtgaacg agtcggacgg ctacgcgctc gaggaatcgc
     1261 tgcgcatcaa ggaaaaggtc ggcggcgaag ttgtcgtttg ctcgatgggc ccgccgcgtg
     1321 cgaagagcgt aatcaaggat gcgctagcgc gcggagcgga tcgcgcgatt catattcttg
     1381 gcgataacgt cggtcacttg tcgccgttcg ccgctgcgag tgtattggct gaagctatca
     1441 aagacgagca agccgatctg atcatgacgg gtttgcagtc tgacgactat ggctatgcgc
     1501 agacgggcgt gattctcgcg gagattctcg gcctgccgca ggcaacgatt gtgatcgaga
     1561 ttgacgccac cggtgagcaa ctgcgcgtca agcgcgaact ggaaagcggc tggtatcagt
     1621 ggtacacgat gccaaagccc gctctgctca cgattcaatc gggcatcagt cagattcgct
     1681 atgcgacctt gaaaggcatc atggcagcca aaaagaaaga gataagagaa gttgctcctg
     1741 ctgctgatat cgttaataag ccttcgcatc agcgcatcga aaagatctac ttgccgcaga
     1801 aatcaaagca gacgcagttg ctcggtggcg gtgacgcgaa gaaaggcgcg gttgaatttg
     1861 cagagaagct gcgcacagaa gcgcgagtaa tatagtagct tgctgaaaaa ctccctctcc
     1921 cgttgggaga gggttgggga gagcgactga gacggcaacg taggtgatgt gctgtggcgc
     1981 ctcgatttcc agactcacgc cctctccctg accctcatcc caaagggaga gggagaaaga
     2041 atctctctgg agaatcatga gcagcggcat tctagttttc atcgaacaca aagcgggcgt
     2101 gctgaataag acctcgctcg aagcgattgc tgccgctcaa aagctggccg gcgagatcag
     2161 ccaaacggta tgggccatcg tgctgggttc gggcgcccaa tcgctggcgc aagagattgc
     2221 ggcttatgat ctgagcaagg tcgtttacgt cgatcatcct cgactggccg actacactcc
     2281 tgacgcgtac gccgcggcga tggatcaagt tgttcgcgcg actgacccgc agtacgtaat
     2341 catggcgcac acgtatctgg cacgcgactt tgcgccaaag gtcgctgcgc gctttggtaa
     2401 aggactaatc ggcgactgca ttcgcatgaa tgtcgatggc tccaaggtgg ttttcacgcg
     2461 tcgcattttt ctcggcaagc ttgatgcgga tgttgtctcg gacggcgcat cgccggtctt
     2521 tgtgactttc caatcgggcg cgtttcgcgg cgatcaggca gtgacgggaa acggcgctcc
     2581 agtcgaaacg atgaacgtcg aacccggcga gattcgcatg aaacccgaag cgccatttca
     2641 ggaagtcaag caggcagtcg atctaacgaa ggctaatatc atcgtcgctg tcggacgtgg
     2701 catcaagagc aaagacaaca tcgcgctggc ggaaaagctc gccgaagttc tcggcgcgga
     2761 tctggcggcc tcgcgtccga tctgcgacgc tgaatggctg ccgatcgatc ggcaaatcgg
     2821 atcatcgggg cagacggtgg cgccgaaact ttacgtcgcc atcggtatct cgggcgcgat
     2881 tcagcatctg gtcggcatga agaactccgg gacgatcgtc gctatcaaca aagatcctga
     2941 agcgccaatc ttcgacgttg ccgattatgg gatcgtgggc gatctcttcg aagtcctgcc
     3001 cgtgcttacc gaggaaatca ggaagctcaa agcctgacga ccgcctgacc gcgcgcggaa
     3061 ggcaattaac agtgattcga gatatagata tttaggcgtt tagttgtgta agccgcacca
     3121 actcagtgag gcacttgact gagtcgttcg ctctccccag cgacttccca aaattccctg
     3181 gcatccgtat gcttttagga gagaattacg ggccaaaccc attctttact cctgacagga
     3241 gataaaatgt gagagtgctg gttatagaag atgacgataa gatcgcttcc ttcatcgtca
     3301 acggcctcaa gcaggccggg ttcgcaacgg accattcagc taatggcgaa gatggactgc
     3361 accgggcttc aactgagcac tacgacgcag cggttgttga tctcatgtta ccgcgactgg
     3421 atgggctctc tctcattgaa aagttgcggc ggcaagaaat aaatacgccg gtgatcattt
     3481 taagcgccaa gcgttccgtc gacgatcggg ttaaaggctt gcaagccgga ggcgacgact
     3541 acatggttaa gcctttcgcc ttttcagaac tcctcgcacg cgtgcaggcg ttgcttcggc
     3601 gtgctaccgg gagtgtcgca gccgagccga ctcggatcac agttggcgac ctttgcatga
     3661 atctcctatc gcgcgaggtt gttcgcgcag gcgaggggat agatcttcag gcgcgagagt
     3721 tcgccctcct ggaataccta atgcgcaacg ccgggcgggt ggtttctaag actatgattt
     3781 tggaacacgt gtgggactat agcttcgacc cgcaaacgaa tgtcgtagat gtgctgatct
     3841 gtcggctaag aaacaaagtg gataaaagct tcaccgagaa aatgctccac accattaggg
     3901 gagttgggta tgttcttaaa gtatcttagc cctaaacata ttgttaggct ccgcaagacc
     3961 atcactttca ggctgatcct ctggtattcc gccttcttca tttttagcac ctcgtttctc
     4021 tttctcctcg cgtactttct gttgtcttca tccgtgcggc aaaaggaccg ggaagaaacc
     4081 catcaaaaac ttggtgaata tgcggcgcaa tatcaaacag gtggtataga ggcgctaaag
     4141 aatgaagtag gtctcgaagg cagatccgcc aaagagaatc ccttttttgt tcgagtcgcc
     4201 ggacctcaca ac
//
LOCUS       DASZZE010000238         4891 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_54765, whole genome shotgun sequence.
ACCESSION   DASZZE010000238 DASZZE010000000
VERSION     DASZZE010000238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4891)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4891)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4891
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54765"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            235..837
                     /locus_tag="VHD88_04615"
     CDS             235..837
                     /locus_tag="VHD88_04615"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HVS21105.1"
                     /translation="MRATTSIADWGARADAELVRSAIAGREADFEELVRRYQRPIAAY
                     VYRMVGDYDAALDLTQEVFIKVYNSLARYRSEFKFSTWIYKIAHNAAIDHLRRYAVRG
                     HALANGVDSERREVAIESGRLTPEQESEKKERCSEIEAVVQMLPAAYRELIVLRHSHD
                     LSYDEIAEVAGLPLGTVKNRLFRAREAMRDQLVQRGITSA"
     gene            861..1445
                     /locus_tag="VHD88_04620"
     CDS             861..1445
                     /locus_tag="VHD88_04620"
                     /inference="COORDINATES: protein motif:HMM:NF024881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HVS21106.1"
                     /translation="MNEFNTDCGCQVEDVAAYLDGELDGAAIDSFETHLKTCTRCADE
                     LRTQRQLLCTLNVAFGETRSFDLPQNFTRVVAAHAESDMSGMRKQSERRRALQLCAIL
                     ALFSFALLGTASGALVFQPARSFLRIAGSLFDLVWRTIYDAGAGASVIVRMVGRAIVA
                     GPYGLGLFLVLAFVIAISLLPRLIANYHRAQIIE"
     gene            1467..2450
                     /locus_tag="VHD88_04625"
     CDS             1467..2450
                     /locus_tag="VHD88_04625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HVS21107.1"
                     /translation="MIASRLSPEIQFSASLARIFKITSLLGALLLWIIAAQAQVAPDN
                     HPGDSQARVIDGVSNSTVFGLGQSIRITGTVKQGAIAFGGDVIVEGTVDGDVAAIGGS
                     VIQREGSRIGGDVIVLGGVYHHDKSAPGRDPQSVTIMYAGYEDQLRRVMRDPFSLLHP
                     QLTPVFFGMRLLAVLFWFVISLALTAAMPNTISRAVARLQLTSLRVALIGVLGSIVIT
                     IGVVVCLLVLPEVVGAMISILALLLVLVAILFGRVVIFAATGRWLQRRFLLRLQSESI
                     ILLLGVAFWVTAASLPYVWPIVIAGLLVTSLGLTLTARYRLIWKRPQPAKT"
     gene            2494..3036
                     /locus_tag="VHD88_04630"
     CDS             2494..3036
                     /locus_tag="VHD88_04630"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HVS21108.1"
                     /translation="MAAAGAGDEAAFEQLFERHRRQVARIAGRFFSQREQIEDIIQDS
                     FTKAYFALSSYHGTHAASFKAWLTQIAVNSCYDQLRRARRRPEQPFGETNESEERELS
                     SQLRAASSDVESALVSRDLAVKLLARLSPDDRMVLTLLDVEGFSVSEIAELTTWSVSK
                     VKVRAHRARAHLRRVLRRFV"
     gene            3149..3577
                     /locus_tag="VHD88_04635"
     CDS             3149..3577
                     /locus_tag="VHD88_04635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21109.1"
                     /translation="MFSENRQMNEQLDRVGHAVLRAAAGNDAETEAAASAPFLFTRVR
                     AAIAEEQRRRNEAGGWLSMLFVARRAVPAMVLVAVLAAILTVWSAQPSAPTPAKFDED
                     ALFGTPGAGVEQTVLADRNGLSPDDVFNIVVDRNYGRSAR"
     gene            3574..3978
                     /locus_tag="VHD88_04640"
     CDS             3574..3978
                     /locus_tag="VHD88_04640"
                     /inference="COORDINATES: protein motif:HMM:NF025173.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic heavy metal sensor"
                     /protein_id="HVS21110.1"
                     /translation="MTLQGRTRLKMWLVLVAVFVLGSVTGAALTGLYRSRASGDRPEA
                     RDKAMKEHFESMRRDLNLTDEQTTAVRAILDETQAEYRALRTELRPRFEEPRQKARAR
                     IRALLTPEQQKKFDAMVAQRDAQRDDEQKSRH"
     gene            4124..>4891
                     /locus_tag="VHD88_04645"
     CDS             4124..>4891
                     /locus_tag="VHD88_04645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21111.1"
                     /translation="MKTLFGSLLTLAVAFSVGPTAQGQTPSASPAAQANSGITANGVI
                     GEVKSVDATAKQMLVKTDSGALVTVTLSEKTVYLRLPPGEKTLTNATKITFADIGEGD
                     RVWARGKVADDQKSLPALAIVQMTKADIAKKQEKERAEWRRRGVLGIVSALNTTTREI
                     TVSARSLMGTPQAVIIPVTDKVIMRRYPPDEIPKFSEAKPSKFEDLKVGDQLRALGDK
                     SEDGTHLTAEEVVSGSFRIAGGTVTAIDPTAGEVKIND"
BASE COUNT         1026 a         1360 c         1461 g         1044 t
ORIGIN      
        1 agccccccga agacatcgta gtggcgggga atgatctcga aaacctgagc cggaattgtc
       61 atcgtcgttt ctcctcgaat ggcttggtaa accaaggcta ttctagacaa ccgacctgac
      121 attcaacata catgtctccc aaagggagag ggggtttttc accggactgt taagtctgtg
      181 ccacttgaaa ctttcggcac tctaccagcg taaaaccgga gcaattagaa acagatgcgt
      241 gcaacgactt ccatagccga ctggggcgcg cgggccgacg ccgaacttgt tcgcagcgcc
      301 attgccggtc gcgaagcgga ctttgaagaa ttggtaagac gttatcagcg accgatcgcg
      361 gcgtacgtct atcgaatggt tggtgattac gatgctgcgc tcgacttaac gcaggaagtc
      421 ttcatcaagg tttataactc gctcgcgcgc tatcgctccg aattcaagtt ctcgacctgg
      481 atttacaaaa tcgcgcacaa cgcggcgatc gatcatctgc ggcgttacgc cgtgcgcgga
      541 cacgcgctgg ccaatggtgt tgacagcgag cgtcgcgaag ttgcgatcga aagcgggcgg
      601 ctcacacctg aacaggaaag cgaaaagaaa gaacgatgct cagagatcga agcggtggtg
      661 cagatgctcc cggctgctta tcgcgagttg atcgtgctca gacattcgca cgatttgagc
      721 tatgacgaaa tcgccgaggt agcagggctg ccactcggca ccgtgaagaa ccgtttgttt
      781 cgcgcgcgcg aagccatgcg cgatcagctt gtgcagcgcg gaatcaccag cgcttagaat
      841 ttattacgac agtctcatcc atgaacgagt tcaacacaga ctgcggatgc caggtggaag
      901 acgtcgccgc ttatcttgat ggcgaactgg acggcgcggc gattgatagt ttcgagacgc
      961 atttgaagac gtgcactcgt tgcgccgatg aactccgaac gcagcgccaa ctgctctgta
     1021 cgttgaacgt ggccttcggt gagacgcgat ctttcgatct gccgcaaaat tttacgcgtg
     1081 tagtcgcggc gcatgccgaa agcgatatga gcggcatgcg caagcagagc gagcgccggc
     1141 gcgctcttca gttatgcgca attctcgcgc tgttttcgtt cgcgctgttg ggcactgcgt
     1201 cgggagcgct ggtgttccaa ccggcccggt cctttctgcg tatcgccgga agccttttcg
     1261 atcttgtgtg gcgaacaatc tacgatgccg gcgccggagc cagcgtaatc gtgcgcatgg
     1321 taggccgcgc gatcgtagcg ggtccctacg gcctgggatt gttcctcgtt ctggcttttg
     1381 tgattgccat ttccctgctt cctcgtctga tcgccaatta tcatcgcgcg caaatcattg
     1441 aataggagtt ccgcgaattc tcttcaatga tcgccagccg gctctcacca gaaattcaat
     1501 tcagcgccag cctggcgcgg attttcaaaa taaccagcct gctcggagcg ttgctccttt
     1561 ggataattgc ggctcaggcg caagtcgcgc ccgacaatca tcccggtgac agccaggccc
     1621 gcgtgatcga tggcgtcagt aacagtacgg ttttcggact gggacaatcg atcaggatta
     1681 ccggcacagt gaaacaaggc gccatcgcgt ttggcggcga tgtgattgtc gaaggcacgg
     1741 ttgacggtga cgtggcggcc atcggcggct cggtgattca gcgcgaagga tcgcgaatcg
     1801 gcggcgatgt gatcgtgctg ggcggcgtct atcatcacga caagtccgcg cccggccgcg
     1861 atccgcaaag cgtcaccatc atgtacgcgg gctacgaaga tcaactgcgc cgggtgatgc
     1921 gcgatccgtt cagcttgctg catccacaac tcacgccggt gttctttggc atgcgcctgc
     1981 tggcggtctt gttctggttc gtcatttctc ttgcgctaac cgcggccatg cccaatacaa
     2041 ttagccgcgc agtcgcgcgt ttgcagttga ccagtctgcg cgtagcgctg attggcgtgt
     2101 tgggctcgat cgtgatcacc atcggcgtcg tagtttgtct gctggtattg ccggaagttg
     2161 ttggcgccat gatttcaatt ctggcattgt tgctggtatt ggtcgccatc ctgttcggtc
     2221 gagtggtcat cttcgcggcg acggggcgct ggttgcagcg ccgctttctg ctgcgcttgc
     2281 aatctgagtc gatcatttta cttctgggcg tggcgttctg ggttaccgcg gcgtcgctgc
     2341 cttatgtttg gcctatagta atcgccggtc tgctggtaac cagtctgggc ctgactctga
     2401 ccgcacgtta tcgtctcatt tggaagagac cgcagcccgc gaaaacctga aacgcttgtg
     2461 tattcacggg atgaaccgac agatgatgcg ctcgtggccg ctgccggtgc gggcgacgag
     2521 gctgccttcg agcaactgtt cgagcggcat cgccgtcaag tagcgcgcat cgccggccgc
     2581 ttcttctcgc aacgcgagca gatcgaagac atcattcagg atagtttcac caaagcatat
     2641 tttgcgctga gtagttatca cggtacgcac gccgcttctt tcaaagcgtg gctgacgcag
     2701 atcgcagtca actcgtgtta tgaccaactg cggcgtgcgc gtcgccgtcc agaacaaccg
     2761 ttcggcgaga ccaacgagag tgaagagcgc gaactctcgt cgcaacttcg tgctgcctcc
     2821 agcgacgtcg agagcgcgct ggtctcgcgt gatctcgcgg tcaaactgtt ggcgcgtctc
     2881 agccccgacg atcgaatggt tttgacgttg ctcgacgttg agggtttctc agtctcagag
     2941 atcgcggaat taacaacctg gtcagtctca aaagtgaaag tccgggcgca tcgcgctcgc
     3001 gcgcatttgc ggcgcgtgct gcgcagattc gtgtaggatg gcgtcgttta agggctagcc
     3061 gctggagaat tgttgtaacc ttcgagagcc ctgaatcgtc ttttattcgt gaggctctcg
     3121 aaactttgag cgcccggaga atccgaatat gttcagcgaa aatcggcaga tgaatgaaca
     3181 actcgaccgc gtcgggcacg ctgtcttgcg cgccgccgcc ggtaacgatg ccgagactga
     3241 ggccgccgcg tctgcgccgt ttcttttcac gcgtgtgcgg gcagcgatcg ccgaagagca
     3301 acgccgccga aacgaagcag gcggctggct ttcaatgctc ttcgtcgctc gacgcgcggt
     3361 gccggcaatg gtgctcgtcg cagtgttggc tgccatcctc accgtctggt cggcacaacc
     3421 gagcgctccg acgccggcaa aatttgatga agatgcactc ttcggaacgc ctggagcagg
     3481 agttgaacag accgtccttg ccgaccgaaa cggtttgtcg ccagatgacg tattcaacat
     3541 cgtcgtggat cgtaattacg ggagaagtgc cagatgactt tgcaaggtcg cacaagattg
     3601 aagatgtggc tggtgctggt ggcggtgttc gtcctcggct cagtaaccgg cgcggcgctt
     3661 acgggactgt atcgctcgcg ggccagcggc gatcgcccgg aggcgcgcga caaggccatg
     3721 aaagaacatt ttgagagcat gcgccgggat ctgaacttaa ccgacgagca gacaaccgca
     3781 gtgcgcgcga ttctggatga gacgcaagcc gagtatcgtg cgctgcgcac tgagttgcga
     3841 ccgcgtttcg aagagccgcg ccagaaagcc cgcgcccgca ttcgcgcctt gcttacgccc
     3901 gaacagcaga agaagtttga cgcgatggtg gcccagcggg acgcccagcg cgacgacgag
     3961 cagaagtcgc ggcattgaaa ctgcgctcgg ctttcgcact cgacagccaa tcgcccatcc
     4021 gacaaggcga gtattttgag gctcggacga acgacgttct tggaacaaac acccctattg
     4081 aggcgtaatg atgaatattt tgcaggcaaa cgaaagagga ataatgaaaa cgctatttgg
     4141 gtctcttctg acactcgcgg tcgcgtttag cgttgggccg accgcccagg ggcaaacgcc
     4201 gagcgcttct ccggcggcac aagcgaattc cggcatcact gccaacggcg taatcggtga
     4261 agtcaagtca gtggatgcaa ccgcgaagca gatgctggtc aaaacagaca gcggcgctct
     4321 ggtcacggtt acgctcagcg agaagaccgt gtatttgcgt ctgccgccag gtgaaaagac
     4381 cctgactaac gcgaccaaga tcactttcgc ggatatcggc gaaggcgacc gcgtctgggc
     4441 ccgaggaaaa gtcgcggacg atcagaaatc cttgcccgcg ctggcaatag tccaaatgac
     4501 caaagccgac atcgcgaaga agcaggaaaa agaacgcgct gagtggcgtc ggcgcggagt
     4561 gttgggcatc gtctcggcac tcaataccac caccagggag atcacagtct ccgctcgctc
     4621 gctgatgggt actcctcaag ctgtaatcat tcccgtaacc gacaaggtca tcatgcggcg
     4681 ttatccgcct gacgagattc cgaagttcag cgaagcgaag ccgagcaagt ttgaagactt
     4741 gaaagtgggg gatcaactgc gcgctctcgg cgacaagagc gaggacggca cgcacttgac
     4801 cgctgaagaa gtcgtctccg gctcgtttcg gatcgccggt ggcacggtga cggctatcga
     4861 tcccaccgcg ggcgaagtga agattaacga t
//
LOCUS       DASZZE010000239         1677 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_104850, whole genome shotgun sequence.
ACCESSION   DASZZE010000239 DASZZE010000000
VERSION     DASZZE010000239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1677)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1677)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1677
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104850"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(81..>1677)
                     /locus_tag="VHD88_04650"
     CDS             complement(81..>1677)
                     /locus_tag="VHD88_04650"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0009166 - nucleotide catabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="5'-nucleotidase C-terminal domain-containing
                     protein"
                     /protein_id="HVS21112.1"
                     /translation="LNRVCPRVSPRRIALASVVLLTVILAVGLATSGLRLAAAQEQRE
                     CPVRVTLLQVNDVYQFAPVDGGTRGGLARVLTLRKQIMSESPHTLFFLAGDTLSPSIE
                     SNTYKGKQMIEAWNAGGLDYATFGNHEFDFGPDVLRKRMGESHFKWLAANVIDKKTGK
                     LFGDTPEFVVREFDGVKIGIFGILLQETLQTSRPGPDVDILDPCATAARVIPKIHAAG
                     AQVIIALTHLSMGEDKRLARCSGVDLIIGGHEHTLLESMSGHAPIFKMTSDARELGRI
                     DLNISKSTGKLESIDWQVIPVTDKVKDDPAFAPLNEKYGPLLKSLEQVVGRTEVELDI
                     KSADVRTQETNMGDFIADAFRQATGADVALVNGGSIRADTIIEPGILTKRDVLSILPF
                     NNRVVKLQLTGAVIRTVFEHGVASIGEEAQPGRFPQVSGLRYEYDARRKPGARVTSIT
                     INGKPLDDRRTYTLATTSYVAIDAGDGYDMFRNAPLVIRPEQAPSETDILLKAIASAP
                     AIGPKTDGRIKRIDAAKDQGSCN"
BASE COUNT          342 a          471 c          472 g          392 t
ORIGIN      
        1 taactaatga gatttgtttc acttcaaact gacccactac ttcggatagc cgcctgtcgc
       61 ggcaggcggt tctgcaccac tcaattacaa gaaccctgat cctttgccgc atcaatgcgc
      121 ttgatccttc catcggtctt cggcccaatc gccggggcag acgcgatggc cttcagtaaa
      181 atgtccgtct cggacggggc ttgttcggga cgaatgacga gcggcgcgtt acggaacatg
      241 tcatagccgt cgcccgcgtc aatagctaca tagctggtcg tcgccagtgt atacgtgcgc
      301 cgatcgtcga gcggctttcc attgatcgtg atgctcgtga cgcgggcgcc gggtttccgc
      361 ctggcgtcgt actcataccg aaggcctgag acctgtggaa agcgaccggg ttgcgcttct
      421 tctccgatgc tggccactcc atgctcgaac actgtgcgaa tcactgcgcc ggtaagttgc
      481 aacttcacca cgcgattgtt gaaggggagg atcgaaagta catcgcgttt tgtcaggatg
      541 cctggctcga tgattgtgtc ggcgcgaatc gaaccgccat tgaccaatgc gacatcggct
      601 cccgtggctt gtctaaaagc atcggcgatg aaatcgccca tgtttgtttc ctgagtgcgc
      661 acgtcagcgc ttttgatatc caactcaacc tcagtgcgtc cgacaacttg ttccaggctc
      721 ttcaaaagcg gcccatactt ttcattaagc ggggcgaagg caggatcgtc cttaactttg
      781 tcggtcacgg gaatgacttg ccagtcgatg ctctcgagtt tgccggttga ttttgagatg
      841 ttgagatcga tgcggccgag ctcgcgcgcg tctgaagtca ttttgaagat cggcgcgtgg
      901 ccggacatcg attccagcaa cgtgtgttcg tggccgccaa tgatcaggtc gacgcccgag
      961 caacgcgcta gtcgtttgtc ttcgcccatc gacaggtgag tgagcgcaat gattacctgc
     1021 gcaccggccg cgtggatttt cggaatcacg cgcgcagcgg tagcgcaagg atcgaggatg
     1081 tcgacatcgg gtccgggccg cgaagtctgt aatgtttcct gcagcagaat gccaaagatt
     1141 ccaatcttca cgccgtcgaa ttcgcgcacg acgaactctg gcgtatcgcc gaataatttt
     1201 cctgtctttt tgtcgatcac gtttgcggcc agccacttga aatgcgattc acccattcgt
     1261 ttgcgcagta cgtcaggccc gaagtcaaac tcgtgattgc cgaacgtcgc atagtcgagt
     1321 ccgcccgcgt tccacgcttc gatcatttgc ttgcctttat aagtattcga ctcgatcgaa
     1381 ggcgagagag tatcgccggc cagaaaaaat agcgtgtgcg gcgactcgct catgatctgt
     1441 tttcgcaggg tcaggacgcg cgctaatccg ccgcgtgtgc cgccatcaac cggggcgaac
     1501 tgatagacgt cgtttacctg caagagcgtc acgcgcactg gacattcgcg ttgttcctgc
     1561 gcggccgcca gtctgagtcc tgacgtggcg aggccgacgg caagaatcac tgtgagcagc
     1621 acgacagagg cgagcgcaat tcgccttggt gaaactcgag ggcaaactcg attaaga
//
LOCUS       DASZZE010000240         8948 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_122048, whole genome shotgun sequence.
ACCESSION   DASZZE010000240 DASZZE010000000
VERSION     DASZZE010000240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8948)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8948)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8948
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122048"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1260
                     /locus_tag="VHD88_04655"
     CDS             <1..1260
                     /locus_tag="VHD88_04655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21113.1"
                     /translation="STCGGRTEDSENIFNEASPYLRGRECAGEGKAEFAPFTIKSSRE
                     LFEIKDEKDLAFARDAALLAVNGLPLSDRVSSSWLSSHVSPSEVRDWILFAGHLARVQ
                     QFSFPEDSTKPPAFSTALVAAVFGDKRADTLLNNADVDYLLSFHDGEQIPKANRADVA
                     MLLRDGHLSLFADATLRPKEAMSRARALHAIARLLEARGLLGLQKGTTRPASGGVMIL
                     RSNKGKDQPVVVSHDAFLFREFGEDLHQMRSLALVGGEPVTFHVNAKGEVDYLEVRPP
                     PNGASAERFSPFTNWTAELSLGEVQARLGRSVRGIGAITDLRVAARGSSRRVIDLEVV
                     GTSGKAHIRGGRIRSALGLREQLFVFDRVYNSNNRVTGFVFTGRGWGHGVGMCQVGAY
                     GLARQGYSSEQILKAYYTGIELTKVYN"
     gene            1366..2376
                     /gene="miaA"
                     /locus_tag="VHD88_04660"
     CDS             1366..2376
                     /gene="miaA"
                     /locus_tag="VHD88_04660"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: protein motif:HMM:TIGR00174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0052381 - tRNA dimethylallyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HVS21114.1"
                     /translation="MRESNKSEKEIQKCGQDVRAPGDTRAPGDTRAPGVIAIVGPTAS
                     GKSALGIELALRLGGEIINCDSVQVYQGIQIATAKVPLAERRGVPHHLIDFVSPRINF
                     TAADWARAAIEKIEEIEARGHRVLLVGGTGFYLRALCQPFFPSPPTDERLRGRLTKIR
                     DREGSERLHRILQRFDPAEAEKLNPRDWPRVQRAIEFCLQTGEPISRERPLRPEPPPL
                     ASRIRIIALNPPRAELYARINERVEKHFANGLVDEVRQLLDEGVPAESNALGAHGYRR
                     VVEYLRRQRDLASAIEQTKIDVRHYAKRQLTWFRHEVGVEWVEGFGDDAHVQQTVLAR
                     LS"
     gene            2513..2809
                     /gene="hfq"
                     /locus_tag="VHD88_04665"
     CDS             2513..2809
                     /gene="hfq"
                     /locus_tag="VHD88_04665"
                     /inference="COORDINATES: protein motif:HMM:NF028518.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006378 - mRNA polyadenylation [Evidence
                     IEA];
                     GO_process: GO:0016070 - RNA metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HVS21115.1"
                     /translation="MDAKAAPQNIQDGFLNLARREKTTVTIYLVNGAKLLGRIKSFDR
                     FSLIMESGATEQLIFKHAISTISQARRVTGELRAHHAVAASENPIEPTDETSAS"
     gene            2836..3486
                     /gene="tmk"
                     /locus_tag="VHD88_04670"
     CDS             2836..3486
                     /gene="tmk"
                     /locus_tag="VHD88_04670"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR00041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004798 - thymidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HVS21116.1"
                     /translation="MAGAFITFEGIDGCGKSTQLRLLASELRVRGIEVVTSREPGGTP
                     LGLKLRAALLDVQEQVHPLTELLVFAADRAQHVRKLLLPALESNHVVLSDRYADATVA
                     YQGAGRGFNPKLIEEIVQLATDGLRPDLTLLFDLSVAESVIRTRRRAASKRTDRLDIE
                     DAEFHTRVRNAYLEIVKAEPARVKVIDARGSVQETHAAVMDIVMPFLKDRGLIGEE"
     gene            3842..4882
                     /locus_tag="VHD88_04675"
     CDS             3842..4882
                     /locus_tag="VHD88_04675"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF024575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HVS21117.1"
                     /translation="MFSTLIGNDEVKALLRHLLASGRMPGSLLFTGEEGIGKKLFALE
                     LAKSFNCRNRQAAESCDECSSCKRISRSTFPPFGKDDDDKDRLIWSEHADVAMARPYK
                     NIIRVPVMRELEREANFRPFEGAARVFIVEDAEYMNDTSANALLKTLEEPAPTSHLIL
                     TTSNPTALLATIRSRCQTIRFAPIPVEEIEKFLIEERRLPTDDAQLLARTSSGSLGRA
                     LSTDIETYRARRDSMLDVLTALTLSGDRAQLLRSAEALAAAKDRDEYEQRLDALETLI
                     RDAWALALGQSKETIVNGDLFNQLQPIAAEIKSEQAAKWLIEIEDVRAALEVNINRRV
                     ASDALFLTMATS"
     gene            complement(4888..5997)
                     /gene="ispG"
                     /locus_tag="VHD88_04680"
                     /gene_synonym="gcpE"
     CDS             complement(4888..5997)
                     /gene="ispG"
                     /locus_tag="VHD88_04680"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: protein motif:HMM:NF016438.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0044237 - cellular metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HVS21118.1"
                     /translation="MRKSKAVQVKNVQIGGGAPVAIQSMTKTDTADVGATVAQIEEMI
                     SAGCEIVRLAVPDNDAAVALKEIRKRVPNVPIVADIHFHYKLALLALDAGIDKLRLNP
                     GNIGKHERIVEVVRAAQAQKVPIRIGVNGGSLEKDLLKKYGTATPEAMVESAMRHIQI
                     LEELDFTDIIISLKASDVQRTVAAYRLLAEKVDYPFHLGVTEAGTSFTGTIKSSIGLG
                     ILLHEGIGDTIRVSLAAEPQEEVRVAWEIVKSLGLRTRGVTVVACPTCGRLDVDNFVG
                     IVTEIEKRLAHIQEPLHLSIMGCAVNGPGEAHDSQLGITFGRGVGMIFKDGVPMRKVA
                     GEDIVEAFVKETEKLLAEGASAKPAVQSTLVAIES"
     gene            complement(6000..7406)
                     /gene="rseP"
                     /locus_tag="VHD88_04685"
     CDS             complement(6000..7406)
                     /gene="rseP"
                     /locus_tag="VHD88_04685"
                     /inference="COORDINATES: protein motif:HMM:TIGR00054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HVS21119.1"
                     /translation="MSLLQSGIIGMLAFIFILGAAVTLHEFGHFIVAKLLKIRVETFS
                     FGFGPRLLGRKWGTTDYRISAIPLGGYVKLGGDESNAPIEGDGASDIPAHERFDLRPR
                     WQRILVAVAGPTMNIMTALAIPFAGAMLYGVQLTPPPVVRQVLPGGAAEAAGLQPGDR
                     IVSFDGNVNPKWKTIADDALLSPGGQLPLEVERSGQRISLTIKPTPHTEAGETVGFLD
                     FLPDYGDLPIIVRAVEDNTPASEAGLRASDRIIAVNDEPVKSAEQVSQFIRDHKGQPI
                     TLHVQRKGAPLDITATARRLTDGRERLGFQPDEELPYKRVGVAGSLTDAVDENIEMVR
                     VTAKAFGQVFAGKRSVRNTISGPIGIYRAASAAAIRVGWAGVFGTLGFLSLNLGVMNL
                     LPIPVLDGGTIFLLLIEGLLAVVGMTISMSVRERIQQVGFVVVILLMVFVITNDLLKQ
                     ASIWRGSGNSQPTATPTK"
     gene            complement(7670..>8948)
                     /locus_tag="VHD88_04690"
     CDS             complement(7670..>8948)
                     /locus_tag="VHD88_04690"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: protein motif:HMM:NF009114.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0030604 - 1-deoxy-D-xylulose-5-phosphate
                     reductoisomerase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070402 - NADPH binding [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HVS21120.1"
                     /translation="KLRSPISGAVAASATCTAFELNFQNMRTRGVAILGSTGSIGCNT
                     LRVIESLGSERFRVVALGAGRNVEKLAEQISRHQPELVSVETEESAAQLKAELTKRKA
                     SWPCVVVGEPGLIEVATHSQADTVVSATVGAVGFVPTLRALEAGKRVALANKETLVMA
                     GELMTRAAEKSGGELLPVDSEHNALHQCLRGEKRSEVRRIILTASGGPFRTLDKAAIQ
                     SATVAEAMKHPTWNMGAKITIDSATLMNKGLEVIEAHWLFGFSADEISIVVHPESIVH
                     SMIELVDGSVIAQMGVTDMRHAIQYALTYPERHASELPALDLAKLSSLHFEAPDLERF
                     PCISLAYRALRAGGTLPAAMNAANEEAVQAFIDERIALTDIPRVIDDVMSRHQRREAN
                     DLDVVLDADRTARAAAGSVIDQLSRAAVESSAA"
BASE COUNT         1928 a         2576 c         2497 g         1947 t
ORIGIN      
        1 tcgacctgcg gcgggcgcac cgaagattcc gagaatatct tcaacgaagc gtcgccgtac
       61 ctgcgcggac gcgaatgcgc cggagaaggc aaggctgagt tcgcgccttt cacgatcaag
      121 agttcgcgcg agcttttcga gatcaaagac gaaaaggatt tggcgtttgc gcgcgacgcg
      181 gctctgctcg ccgtgaacgg attgcctttg tccgatcgcg tctcaagctc gtggttgtcg
      241 tcgcatgttt ccccgtcaga agtccgcgac tggattctgt tcgccggaca tctggctcgc
      301 gttcagcaat tctcttttcc cgaagattcg acgaagccgc cggctttcag cacggcgctg
      361 gtggccgcgg tctttggcga caaacgcgcc gacacgctat tgaacaacgc cgacgttgat
      421 tacctgctct cgtttcacga cggcgaacag attcctaaag ccaatcgcgc cgacgtggcg
      481 atgctgcttc gcgacgggca tctctcgctt ttcgctgacg caacgctgcg gccgaaagaa
      541 gcgatgtcac gcgcaagagc gctgcatgcg atcgcgcgac tgctggaagc gcgcggcctg
      601 ctcggcttgc agaaaggaac aacgcggcct gcgtccggcg gcgtgatgat tctgcgttct
      661 aacaaaggca aagaccaacc ggtcgtcgtc agccacgatg cttttttgtt tcgcgagttt
      721 ggcgaggacc ttcatcagat gcgctcactc gcgttggtcg gcggcgagcc ggtgacgttc
      781 cacgtcaatg cgaaaggcga agttgattat ctcgaagtcc gtccgccgcc caatggcgct
      841 tcggctgaac gcttttcacc attcacgaat tggaccgcgg agctctctct cggcgaagtg
      901 caagcgcgtc tgggccgatc ggttcgcggc attggcgcga ttactgacct gcgcgtcgcc
      961 gcgcgcggat cgtcacgacg agtgatcgat ctggaggtcg tgggcacatc aggcaaggcg
     1021 cacattcggg gcggccggat tcgctcggcg cttggcttgc gcgaacaact cttcgttttc
     1081 gatcgagttt acaactccaa caatcgcgtc acgggattcg ttttcaccgg acgcggctgg
     1141 ggccacggcg tcggcatgtg ccaggtcggc gcttatggtt tggcgcggca aggctatagt
     1201 tctgagcaga ttctcaaggc ttactacact gggatcgaat taacgaaggt gtacaactaa
     1261 gaccaaggct ccaatgcgct tctctcgcaa tcaaatcatt ggcgcaatca ttctgctcgc
     1321 catcatctgg ctcgtgatcg cgattcggct tatcatctct cgcgggtgag agagtcaaat
     1381 aaaagcgaga aagagattca gaaatgcgga caggatgtcc gcgctcccgg cgatacacgc
     1441 gctcccggcg atacacgcgc tcccggcgtc atcgccattg ttggtccaac cgcttcggga
     1501 aagagcgcgt tgggaattga actggcgctt cgtctcggcg gagaaataat caattgcgac
     1561 tccgtgcagg tttatcaggg cattcagatc gcgacggcga aagtgccgct cgcggagcga
     1621 cgtggcgtcc cgcaccactt gattgatttc gtttcgcctc gcatcaattt caccgcggcg
     1681 gactgggcgc gcgctgcgat cgagaagatc gaagagatcg aagcccgtgg tcaccgagtt
     1741 ctgttggttg gcggcacagg cttttatttg cgagccttgt gtcaaccttt cttccccagc
     1801 ccgccgactg acgaaagact tcggggcaga ctcaccaaaa tccgcgatcg tgaaggatct
     1861 gaacgtcttc atcgcatcct gcaacgcttc gacccggcgg aggcggagaa gttgaatccg
     1921 cgtgactggc cgcgagtgca acgcgcgatc gagttctgtc tgcaaaccgg cgagccaatt
     1981 tcgcgtgaaa ggccgctgcg gcctgaacca cctccgctcg cttcacgcat tcgcatcatc
     2041 gcgctgaatc cgcctcgcgc cgaactctat gcgcggatca acgaacgcgt agaaaagcat
     2101 ttcgcgaacg ggctagtcga tgaagtgcgc caactactcg acgaaggcgt gcccgccgaa
     2161 tcaaacgcgc tgggcgcgca cggttatcgg cgggtggttg aatatctgcg tcgccagcgc
     2221 gatcttgcaa gcgcgatcga acagaccaag attgacgtgc gtcactatgc caagcgacag
     2281 ttgacgtggt ttcgccacga ggtcggcgtc gagtgggttg aaggattcgg cgatgatgcc
     2341 cacgttcagc aaacagtgtt ggcgcggctt agctgagtgc tcaccgaaca cccgctcgat
     2401 accgcgagcg gttcggtaca ctccgcggaa aaaccttgtc aggatcgact gcttgttata
     2461 ctctgaggcc gcttaagcaa acttcagtta caaagacccc gcggagcgac tcgtggacgc
     2521 caaagcagca ccgcaaaaca tccaggatgg gttcctcaat ctcgctcgac gcgagaagac
     2581 cacggttacg atctatctgg ttaacggcgc gaagctgctg ggccgcatca agagtttcga
     2641 cagattctcg ttgattatgg aatcgggcgc gacagagcaa ttgattttca agcacgctat
     2701 ttcgacgatc tcccaggccc ggcgcgtgac cggcgagctt cgcgcgcacc atgccgtagc
     2761 cgcgagtgag aacccgatcg aaccgacgga cgagacttcc gcctcttgat accagtcgac
     2821 gcacacgcaa cccgcatggc cggcgctttc attactttcg aagggattga tggttgcgga
     2881 aaatccacgc agcttcgttt gcttgcgagt gagctccgag tgcgcggcat cgaggtagtg
     2941 acgtcgcgag agcctggcgg cacgcctctg ggtttgaagc tgcgcgctgc cctgctcgac
     3001 gtgcaggaac aagtccatcc gctaaccgag ttgctggttt tcgccgctga ccgggcgcaa
     3061 cacgtgcgta aacttctgtt gccggccctt gagtcgaatc acgtggtctt gtccgatcgg
     3121 tatgcggacg cgacggtcgc ttatcagggg gcgggccgtg ggtttaatcc gaaactgatc
     3181 gaagaaatcg tccagcttgc gactgatgga ctcaggccgg acctaacctt gttgtttgat
     3241 ttgtcagtcg ccgagtcggt aatccgcacc aggcgtcgcg cggcatctaa gcgcaccgac
     3301 cgcctcgaca ttgaagacgc cgagtttcac actcgtgtac gcaatgctta tcttgaaatt
     3361 gtgaaagccg agccagcgcg cgtgaaggtg atcgacgccc ggggctcagt tcaggaaaca
     3421 cacgcagccg tgatggacat tgtgatgcct tttctcaaag atcgcggact gattggcgag
     3481 gaataggttt cgggtttgcg acaccatccc ggatcgttca tgaggtcttt gcctgcagag
     3541 tccgctgagc ggacgatcgg aaatagcccg gcacctttag tgctgggtgg gcggtcacag
     3601 ataataaaca agagcccgcg aagcgggtaa caggggttac agaaccggga gcggtagcga
     3661 ccggatgcga gcattcaact tgagtaattg actctatgtt ttgcgggtat cttcccaagt
     3721 cgagcgttgg catccgctcg ctaccgctcg cggttctgta ccaaaggggt gctgccgtcc
     3781 gcttcgcgga ctggatttgg cgctgcttat ctactgtttg ctggcttcta ctactgactt
     3841 tatgttttcc acgctcatcg gcaatgacga agtaaaggct ttgcttcggc atctgctcgc
     3901 gagcggccga atgcccggct cgctgctctt caccggcgag gaaggcatcg gcaagaagct
     3961 tttcgctctt gagctggcca agtccttcaa ttgccgcaat cgtcaggctg ccgagtcgtg
     4021 cgatgaatgc tcctcgtgca aaaggatttc gcgatctact tttccgccct tcggcaaaga
     4081 tgatgatgac aaagatagat tgatctggag cgagcacgct gacgtggcga tggcgcggcc
     4141 gtacaagaac atcatcagag tgccagtgat gcgcgaactg gaacgcgaag ccaattttcg
     4201 acctttcgaa ggagcggccc gcgtctttat cgtcgaggac gctgagtaca tgaacgacac
     4261 ttctgccaac gccctgttga aaacactgga agaaccagca ccaacgtcgc atttgattct
     4321 gaccacgtcg aacccgaccg cgctgctggc gacgattcgt tcccggtgtc agacgattcg
     4381 tttcgcacca attcctgtcg aagaaatcga gaagtttctg attgaagaaa ggcggctgcc
     4441 taccgacgac gctcaactcc tggcgcgcac ctcgagcggc agcctgggcc gcgcactctc
     4501 aaccgatatt gaaacttatc gcgcgcgacg cgactcaatg cttgacgtgc tcaccgcgtt
     4561 gacgctgagt ggcgatcgcg cccaactgct tcgctcggcc gaagcgttag ccgcagccaa
     4621 agatcgcgat gaatacgaac aacggcttga tgcgttagag actttgattc gcgacgcctg
     4681 ggcgctggcg ctgggacaat ccaaggaaac aatcgtaaac ggtgatctct tcaaccagct
     4741 tcagccgatc gccgctgaga tcaagagcga acaggctgcg aaatggctca tcgaaatcga
     4801 agacgtgcgc gcggcgcttg aagtaaacat caatcgtcgc gtcgccagcg atgcactttt
     4861 cctgacaatg gctacgtcgt aaatatccta agattctatt gcgacaagcg tggattgtac
     4921 cgccggtttt gctgaggcgc cttcggcgag aagtttttct gtctctttca caaacgcttc
     4981 gacgatgtct tcgccggcaa ccttgcgcat cggcacaccg tccttgaaga tcatgccgac
     5041 gccgcgaccg aaagttatgc cgagttgcga atcgtgcgct tcacccggac cgttgaccgc
     5101 gcaacccatg atcgagagat gcaatggttc ctggatgtga gccagacgct tttcgatctc
     5161 cgtgacaatg ccgacgaagt tgtcgacatc gagtcgacca caggtcgggc aagcaaccac
     5221 ggtaacgccg cgcgttcgca agcccagcga cttcacaatc tcccaggcga cgcgaacctc
     5281 ttcctgcggc tcggccgcga gcgagacgcg aatcgtgtca ccgatgcctt catgcagcag
     5341 gatgccgagg ccaatcgacg atttgatcgt tccggtaaac gaggtgcctg cttcagtcac
     5401 gccgagatga aacggatagt caaccttctc cgcgagcagt cgatatgcag cgacagtgcg
     5461 ctgtacatca gaggccttga gcgaaatgat gatgtcggta aagtccaact cttccaggat
     5521 ctggatgtga cgcatggctg actcaaccat cgcttcaggt gtcgccgtgc cgtacttctt
     5581 caacaaatcc ttttctaaag agccgccatt gacgccgatg cgaatcggaa ctttctgcgc
     5641 ttgcgccgcg cgcactactt cgactatgcg ctcatgcttg ccgatgttgc cgggattcag
     5701 acgcagcttg tcgataccgg cgtccagcgc cagcagagcg agcttgtaat gaaaatggat
     5761 gtcagcgacg ataggcacgt taggcacgcg cttgcgaatc tctttcagcg ccacagccgc
     5821 atcgttgtcg ggcacggcga gacgcacaat ctcgcaacca gcgctgatca tttcttcgat
     5881 ttgcgcaact gtggcgccaa catcggccgt gtccgtcttg gtcatcgact ggatggccac
     5941 cggcgcgccg ccgccgattt gaacattctt aacttgtact gcttttgact ttcgcatcac
     6001 tatttcgtcg gcgttgccgt aggttgactg tttccagagc cgcgccagat cgaagcttgt
     6061 ttcaacaaat catttgtaat cacaaacacc atcaagagaa tgacgacgac gaatccaact
     6121 tgctgaatcc gctcgcgcac actcatagat atcgtcatcc ccacaacagc caacaaacct
     6181 tcgatgagca gcaaaaagat tgtaccgcca tccagtacgg gaatcggtag gagattcata
     6241 actccgaggt tcaaactcaa gaatccgagg gtgccaaaga caccggccca ccccacacgg
     6301 atcgctgccg ctgatgccgc cctatagatt cctatcggac cagagatcgt atttcgcact
     6361 gaacgtttgc cggcaaatac ctgaccaaag gccttcgctg taacgcgcac catttcgatg
     6421 ttctcatcaa cggcgtccgt aagtgaacca gccactccca cacgtttgta gggtagttct
     6481 tcgtccggtt gaaatccaag ccgttctctt ccgtcagtca agcgcctggc tgtcgctgta
     6541 atatcgagag gggctccctt gcgttgcaca tgtaaagtga tcggctgacc cttgtggtcg
     6601 cgaatgaatt gactcacctg ttctgcgctt tttactggtt cgtcgttaac ggcaatgatg
     6661 cgatcactcg cacgcaatcc ggcttccgat gccggagtat tgtcttccac ggctcgcact
     6721 atgatcggca aatcgccgta gtcagggaga aaatcaagaa agccaactgt ctcgcctgct
     6781 tcagtgtgcg gcgtgggttt gatagtcaaa ctgattcgtt gcccagatct ctcgacctcg
     6841 agaggtaatt gtcccccggg cgaaagtaat gcgtcgtccg cgattgtctt ccatttggga
     6901 ttgacgttac cgtcgaacga aacgattcga tcgcccggtt gcaaaccggc cgcttctgcg
     6961 gcgccgccag gcagtacctg ccggacaact ggtggaggag tcaactgcac gccataaagc
     7021 attgcccctg caaaaggaat tgccaatgct gtcatgatgt tcatcgttgg acccgctacg
     7081 gcgacgagaa ttctctgcca gcgtggtcgt aaatcgaacc tctcgtgcgc gggaatgtcc
     7141 gaagcgccat cgccctcaat cggtgcgttt gattcgtcgc ctcccagttt gacgtacccg
     7201 cccagaggga tcgccgaaat tcgatagtcc gtcgtgcccc acttgcgacc aagcagcctt
     7261 gggccaaagc caaacgagaa cgtctccacg cgaatcttga ggagtttcgc gacgataaag
     7321 tggccgaatt cgtggagcgt taccgctgcg ccaagaatga atatgaaggc cagcattccg
     7381 ataattccgc tttgcaacaa gctcatcagt taatccaata ccattcgttt agagccgaaa
     7441 cacagcattc cttggtagtg tcttggtctg atttattctc tgcgttaact ctgcgttcct
     7501 ccgcgcctct gcggtgaatc ctagccacga aaagctcacc gcagagacgc agaggccgca
     7561 aaggctgcgc agagaagagc tgaaattaag acactaccca ttccttaatc gagtttacgt
     7621 ggctggtggg agatgcgtca aaccgggtga agcttgcgga ttcgtggatt caagcggcac
     7681 tgctttcgac cgcggcgcgc gataactgat cgatgaccga accggctgcg gctcgcgccg
     7741 tgcgatccgc gtcgagcacg acgtcgagat cattcgcctc gcgccgttgg tgacgactca
     7801 ttacatcgtc aatgacgcgc ggaatatcag tcagagcaat ccgttcgtcg atgaatgcct
     7861 gcactgcttc ttcgttcgcc gcgttcatcg ccgccggcaa agttcctccg gcgcgcagcg
     7921 cacggtaggc aagcgagatg catggaaagc gctccaaatc gggcgcttca aaatgcagcg
     7981 aagaaagctt tgcgagatcc agcgccggaa gctctgaagc gtggcgttcg ggataggtga
     8041 gcgcgtactg aatcgcatgg cgcatgtcgg ttacgcccat ctgtgcaatc actgaaccat
     8101 cgaccaattc gatcattgaa tgaacgattg attcaggatg cacgacgatg ctgatctcgt
     8161 ccgcgctgaa accaaagagc caatgggcct cgattacttc cagcccttta ttcatcagag
     8221 tcgccgaatc gatcgtaatc tttgcgccca tgttccacgt tggatgcttc atcgcttccg
     8281 cgacggtggc agattgaatc gctgccttat caagagtgcg aaacggccca cccgacgcgg
     8341 tgagaattat tcgtcggacc tctgatcgct tctcgccacg cagacattga tgcagagcgt
     8401 tgtgctcgga atcgactggc agcaattcac cgccagactt ctctgccgcg cgtgtcatca
     8461 actccccggc cataaccagc gtctctttgt tggccaacgc gacgcgcttc cctgcttcca
     8521 acgcacgcaa agtcgggacg aatccaacgg cgccgacagt agccgaaaca acggtgtctg
     8581 cttgcgagtg cgtcgcgact tcaattagac caggttcgcc aacgacgaca cacggccacg
     8641 atgcctttcg cttagtcaac tcagctttca gttgtgccgc ggattcttcg gtctcgactg
     8701 aaaccagctc aggctgatga cgagagattt gctcagcgag tttctcaaca ttgcggccgg
     8761 cgccgagcgc aacgacgcga aaacgctcgg agccgagcga ttcgatcacg cgtagcgtat
     8821 tgcatccgat tgagccagtc gatcctaaaa tggcaacgcc gcgtgttcgc atattttgaa
     8881 agttcaattc gaaggcggtg caggtggcgg aggcggcgac tgctccgctg atgggggacc
     8941 gtagcttt
//
LOCUS       DASZZE010000241         2690 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_267983, whole genome shotgun sequence.
ACCESSION   DASZZE010000241 DASZZE010000000
VERSION     DASZZE010000241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2690)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2690)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2690
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_267983"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..701
                     /locus_tag="VHD88_04695"
     CDS             <1..701
                     /locus_tag="VHD88_04695"
                     /inference="COORDINATES: protein motif:HMM:NF013682.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004571 - mannosyl-oligosaccharide
                     1,2-alpha-mannosidase activity [Evidence IEA];
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 47 protein"
                     /protein_id="HVS21121.1"
                     /translation="YLLKSWLLFDDEDCHRMWLDSIAAINKYLSDEVSNINRSFLGPI
                     PKKELWYGHADMSSGKRTGTTYGALDAFFPAVLALSGDLDRARRLQDSSFKMWRTYGI
                     EPEEINYQTMEAASPGYPLRPEIVESTYYLYHYASVSAPGLPTLRKGKPALTEGYLQM
                     GQTMFEDFVNYCRTDEGYAALKNVVTKEKADSMQSFLFAETFKYFYLLFAPPKTLDFD
                     RVIFNTEAHPVRRK"
     gene            706..1131
                     /locus_tag="VHD88_04700"
     CDS             706..1131
                     /locus_tag="VHD88_04700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HVS21122.1"
                     /translation="MVSQNDSSEKLIALLQLAYSGELAAAHAYQGHWHSVSDAAEKAS
                     IQSIENDEWRHRKLVGEMLAGLNAGPSKQREVRATIIWSDVGIFMSRHGLARADVRRR
                     QIGEPQHSRVRNRCAPCTRLWPHGLDRLLIGNGGSRVGA"
     gene            1186..1326
                     /locus_tag="VHD88_04705"
     CDS             1186..1326
                     /locus_tag="VHD88_04705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21123.1"
                     /translation="MATTAALSGDVKVTSVSGDTIAGDVDLTSSETTIKGSFTAKILT
                     RK"
     gene            1415..2077
                     /locus_tag="VHD88_04710"
     CDS             1415..2077
                     /locus_tag="VHD88_04710"
                     /inference="COORDINATES: protein motif:HMM:TIGR01065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin III family protein"
                     /protein_id="HVS21124.1"
                     /translation="MARMTEAHFPHERSQTLREEIANAISHGVGLALAIVATPFLIVA
                     AFRAGTVWNTVGVSVFAASMVLLYFASTLYHALTHDGAKRVFRVLDQGAIFLLIAGTY
                     TPFTLGVMRGPWGWTLFELVWALAIFGLTMKALFATRFAWLSMVLYLTMGWLVLIAAP
                     QVWARVPLTGLLWILAGGIAYTAGVGFFVAHRVRYSHFAWHLFVIVGTTCHFFAVLWY
                     SA"
     gene            2385..>2690
                     /locus_tag="VHD88_04715"
     CDS             2385..>2690
                     /locus_tag="VHD88_04715"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HVS21125.1"
                     /translation="MATAIAPKKPEIKTALPGPKAKAIVEADAQFVNPAYPRPSFKLV
                     AERAQGVWVEDVDGNVFLDCNAGVAVCSTGHCHPEVVRAIQEQAAQLIHMCGTDYYYS
                     "
BASE COUNT          567 a          741 c          764 g          618 t
ORIGIN      
        1 agtatcttct taagagttgg ttgttattcg acgatgagga ttgccatcgc atgtggctcg
       61 atagcattgc ggccatcaac aagtatcttt ccgatgaagt ctccaacata aatcgaagtt
      121 tcttaggccc gattccgaag aaagaactct ggtacggtca cgccgacatg agcagcggca
      181 aacgaactgg gacgacctac ggagcacttg atgctttctt cccggcggtg ctggcgttgt
      241 caggcgatct ggatcgcgcg cggcgcttgc aggactcgtc tttcaaaatg tggcgcacgt
      301 acggaatcga gcccgaagaa atcaactacc aaacgatgga ggccgcgtcg ccgggctatc
      361 ctctgcgtcc ggagatcgtt gagtcaactt actatcttta tcactatgca tcggtcagcg
      421 cgcccggtct tccaacactt cgaaaaggca aacccgcctt aactgaaggg tatctccaaa
      481 tgggccagac gatgttcgag gacttcgtca actattgccg caccgacgaa ggctacgcgg
      541 cgctgaagaa cgtcgtgacg aaagaaaaag ctgattcaat gcaaagcttt ctcttcgccg
      601 agactttcaa gtatttctat ctactcttcg ctccgccgaa gactttggat ttcgacagag
      661 taatcttcaa caccgaagcg catccggttc gaagaaagtg ataaaatggt ttcgcaaaac
      721 gatagcagcg aaaagctaat cgctcttctc cagttggcct actcgggcga attggcggcg
      781 gcgcatgcct atcaagggca ttggcattcg gtcagtgatg cagccgagaa ggcttcgatt
      841 caaagcatcg agaacgatga gtggcgccac cgcaaacttg tcggtgaaat gcttgccggc
      901 ctcaacgccg gaccgagcaa gcaacgcgaa gtccgtgcga caattatttg gtcggacgtt
      961 gggattttta tgtcacgtca cgggctggct cgcgccgatg tgcggcgccg gcagattgga
     1021 gagccgcaac attcgcgagt acgaaaccgc tgcgcgccat gcacgcgatt gtggccgcat
     1081 ggacttgatc gactgcttat tggaaatggc ggaagtcgag tgggagcatg aattgtattt
     1141 tcgatcgcgc gtgcgggagc acgggcttgg tcgtcgactt cgactgtggc cacaaccgcc
     1201 gcgctaagtg gcgacgtgaa agtgacgtcg gtttctggcg acacgattgc cggcgacgtt
     1261 gatctgacca gcagcgagac tacgatcaag ggctcgttca ccgcgaagat cttgacgaga
     1321 aagtaacagc gcagattccg cgaaccgaag aagcggcggt aatcccggcg gcagcgaaat
     1381 ttttcgctca ctgcgggacg ggaatctgcg tagaatggct cgcatgacgg aagcgcattt
     1441 ccctcatgaa cgctcgcaga ctctgcgaga agagatcgcc aacgcgatca gccacggtgt
     1501 cggactggcg ctggcgatcg tggcgacgcc attcttgatc gtcgccgcgt ttcgcgccgg
     1561 cactgtgtgg aatacagtcg gcgtgagcgt cttcgcagct tcgatggtgc tgctgtactt
     1621 cgcttcgact ctctatcacg cgctaacaca tgacggagca aagcgcgtct tccgcgtgct
     1681 ggatcagggc gcgatctttt tgctgatcgc cggcacctac acgcctttca cgttgggtgt
     1741 aatgcgcggt ccgtggggct ggacgctttt tgaactcgtg tgggcgctgg ccatctttgg
     1801 cctgacgatg aaagctctgt tcgcgacacg attcgcctgg ctgtcgatgg tgctgtatct
     1861 gacgatgggt tggctggtgc tcattgcggc gccgcaggtt tgggcgcgag ttccgttaac
     1921 cggcttgctc tggatcctgg cgggcggcat cgcctacacg gccggtgtcg gtttctttgt
     1981 ggcgcaccgt gtgcgttaca gccacttcgc ctggcatctg tttgtaatcg tgggaacgac
     2041 ttgccacttc ttcgcggtgc tctggtattc agcttaatcg ctgatcgact catcggcaga
     2101 aacccgaccg tgagggaggg tgccactcgt tctcgcaccc tccctcacgg tcgggtttct
     2161 gcctcaagac gcttagggca tttgctctgg ccacggtgtg cgtatgtggt atcatcaagc
     2221 ctcctacaaa gaactatgcc cgatcgtcag tctttacact tccgacctct cgacaaccgc
     2281 gccgatctct tcgcggacta gcgtttccat cttcaacatc gcttcgcttg atctgacact
     2341 actgttaagt gtcgtccacg attttttcaa ggaggagaaa gatgatggca accgccatcg
     2401 caccaaagaa acctgaaatc aaaaccgcgc tgcccggccc aaaggccaaa gccatcgtcg
     2461 aggccgacgc gcagttcgtt aacccggcat atccgcgtcc gtcattcaaa cttgtcgccg
     2521 agcgcgcgca gggcgtttgg gtcgaagatg ttgatggcaa cgtctttctt gattgcaacg
     2581 ccggcgtggc cgtttgctcg accggtcact gtcatcccga agtcgtgaga gccattcaag
     2641 agcaagccgc gcaactgatt cacatgtgcg gcaccgacta ttattactcg
//
LOCUS       DASZZE010000242         5440 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_24412, whole genome shotgun sequence.
ACCESSION   DASZZE010000242 DASZZE010000000
VERSION     DASZZE010000242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5440)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5440)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5440
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24412"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..939
                     /locus_tag="VHD88_04720"
     CDS             <1..939
                     /locus_tag="VHD88_04720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21126.1"
                     /translation="TESTQRPITVTELLNVESTADRREYKYVSLNLNREKRYADLTVR
                     GPEAGLPTTPEEIQKLGDAFWPLRAYRELDDALLHLRVNEPEIGLVCIRTQGNIDDVV
                     AIDKTLAANRDHWLIREIILYMARTLWRLDLTAKSFFAMIEPGSCFAGNLLELMLASD
                     RSYMLNNSDDRVEIATSELSAGAFPMSNGLTRLQSRFLAEPDKVDEVLAHDGSFDTEA
                     AEKAGLVTFAPDDLDWEDEIRLAIEERTSLSPDALTGMEASLRFAGPETMDTKIYGRL
                     TAWQNWIFQRPNAVGPQGALTNYGKPTQAQFDYKRT"
     gene            1025..2431
                     /gene="boxB"
                     /locus_tag="VHD88_04725"
     CDS             1025..2431
                     /gene="boxB"
                     /locus_tag="VHD88_04725"
                     /EC_number="1.14.13.208"
                     /inference="COORDINATES: protein motif:HMM:TIGR03225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051213 - dioxygenase activity [Evidence
                     IEA];
                     GO_process: GO:0010128 - benzoate catabolic process via
                     CoA ligation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="benzoyl-CoA 2,3-epoxidase subunit BoxB"
                     /protein_id="HVS21127.1"
                     /translation="MNLYNRIPNNVNLSEDKRLQRALEKWLPNFLSWWHDMGPDGFQD
                     KDVWLRTAIDVGSEGWAHFDYVKMPDYRLGIFLEPAQADAKVGFGDNYGQPAYQEVPG
                     EFRNALRRIIVTQGDTEPASVEQQRQLGKTCPSLYDMRNLFQVNVEEGRHLWAMVYLL
                     HGYFGRDGRDEADALLERRSGNPDKPRILEAFNQPCDDWLNFFAFTMFTDRDGKYQLS
                     ALAESGFEPLARTCKFMLTEEAHHMFVGDTGLSRVVKRTAQLMKQNPNQDVRELGGIP
                     LDIIQKYINFWFSYSLDLFGGEISSNSADFFAAGLKGRFKEQEQYTDHIAAEGIFTLM
                     VVEDGKLVPREVPLRNALNEVLRGEYVKDCEKGLARWNRALADEGISERLFLPNVRFH
                     RHVGEYAGHHFDLEGNLITKEEFEQRKGEWLPTMEDREYVRSLMHSVTEPGKIANWIA
                     PPAAGIKGKPFEFEYVRL"
     gene            2494..3264
                     /locus_tag="VHD88_04730"
     CDS             2494..3264
                     /locus_tag="VHD88_04730"
                     /inference="COORDINATES: protein motif:HMM:NF036525.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HVS21128.1"
                     /translation="MKRTRTNHNELPGNPQSEIRISKSPDLSHYDQKLEMILRTSARI
                     FAAKSYHSTSMRDISRATGVSLAGLYHYCKSKEELLFLIQDHCFGRVLEQLEQRIKGI
                     EDPFEKLRIFIDNHLSFFAANMAEMKVLSHEAESLAGELHQQVSSRKRQYTRRARKIL
                     SEVQQAKSSRSRAMRKNGQRARTSGRLIDLTVATYALFGMMNWIYNWYDPRGKLSVSQ
                     LVDNITRLFLAGFLSETDAPFALADSATVEKVSIWRTA"
     gene            3297..4103
                     /locus_tag="VHD88_04735"
     CDS             3297..4103
                     /locus_tag="VHD88_04735"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HVS21129.1"
                     /translation="MTDLKRNLVEYCVSEGVAVLTLNDPPANTYSYEMMQQLDARILE
                     ARMDESVQVIVITGSGEKFFCAGANIPMLSSVTPEFKYYFCLHANETLSRFEQTPKLV
                     IAAINGHCVGGGLEVAMAADIRVAHRNAGKMGLPEVSLGVLPGTGGTQRLARIVGKST
                     AIELIATGELFDFEKGQKLGLVNQIHDADSSEKFMDQVMNYARQFTTPNKAARAVGRI
                     KRSVQTGAEITFESALALERELQQQLFQSEDAKEGLEAYVNKRKPVFKGK"
     gene            4213..5004
                     /locus_tag="VHD88_04740"
     CDS             4213..5004
                     /locus_tag="VHD88_04740"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase"
                     /protein_id="HVS21130.1"
                     /translation="MSDQLIKVAEDNGIVTITLNRPDRLNAFVGHMRRDLAEALEEAG
                     SDPHVRVVVITGEGRAFCAGGDVQFMAELVERNDSEEFGRLLGAARRVILAIRQMTKP
                     VIASIGGPAFGAGFNLALACDLRIASADATFSQSFVKLGFHPDWGGTYFLPRMVTSNI
                     ACELFFLGDAIDAQEALRLGLVNRVVAPEDLEAETRKLVERLRAGPAVSIAAAKHAVY
                     ASEHDTLERMLQYEVEAQARCFESEDGREGVRAFLEKRPPRFTGR"
     gene            5084..>5440
                     /locus_tag="VHD88_04745"
     CDS             5084..>5440
                     /locus_tag="VHD88_04745"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HVS21131.1"
                     /translation="MRLKNRVALITGGGRGIGRAIAFAFARDGASIAVAARTRKQVES
                     VANEIASECGVQTLAIECDVANAENVNRAFERANEKFGRGPDILVNNAGIVETAAFLK
                     IDEARWQRHLAVNLTGT"
BASE COUNT         1288 a         1398 c         1583 g         1171 t
ORIGIN      
        1 acggaaagca cgcaacggcc aataaccgtc accgagcttc tgaatgtcga atctaccgcc
       61 gatcgtcgcg aatacaaata cgtaagcttg aacctgaatc gcgaaaagcg ttacgccgat
      121 ctaactgtcc gcggacctga agcaggattg cccacgacgc cggaagagat tcagaaactg
      181 ggcgatgctt tttggccgct tcgtgcttac cgtgaattgg atgatgcgct gctgcacctg
      241 cgcgtcaacg agcctgagat cggtttagtt tgcatccgca cgcaaggaaa catcgacgat
      301 gtagtggcga tcgataaaac actcgctgcg aatcgagatc actggctgat ccgcgaaatc
      361 attttgtaca tggcgcgcac gctgtggcgt ttggatctga cagcgaaaag tttctttgcg
      421 atgatcgagc ccggcagttg cttcgcaggc aacctgctcg aactgatgct tgcgtctgac
      481 cgcagttaca tgctcaacaa ctcggatgac agagttgaaa tagcgacgag tgaattaagc
      541 gctggcgcgt tcccgatgag caatggattg actcgtttgc aatcgcgttt tctggccgag
      601 ccggacaaag ttgatgaagt gctcgctcac gatggctcgt tcgacacgga agccgccgaa
      661 aaggccggcc tcgtaacctt cgcaccggat gatctggatt gggaagacga aatcaggctg
      721 gcgattgaag aacgcacctc actttcgccc gacgcattga ccgggatgga agcatcacta
      781 agattcgcgg gaccggaaac aatggacaca aagatctacg gacgcttgac cgcgtggcag
      841 aactggatct ttcagcgccc gaacgccgtc ggaccgcagg gcgcgttgac gaattatggc
      901 aagccgacgc aagcgcagtt tgattacaag aggacttagc cacagatgaa cacagattca
      961 cactgatgca ttaggacttt atctgtgttt atctgcggaa atctgtggct gatgtattta
     1021 agtcatgaat ctatacaatc gcattcctaa caacgttaac ctttccgaag acaagcgcct
     1081 gcaacgcgct ctggaaaagt ggctgccaaa ctttctcagt tggtggcatg acatggggcc
     1141 ggacggcttt caagataaag acgtttggtt gcgcaccgcg atcgatgtcg ggtccgaagg
     1201 gtgggctcat ttcgattacg tgaagatgcc tgactatcgt ttgggcattt ttcttgagcc
     1261 cgcgcaggcg gatgcgaagg ttgggtttgg cgataactac ggacagccgg cttatcagga
     1321 agttcccgga gagtttcgca acgcgctgcg gcggatcatt gtcacgcagg gcgatactga
     1381 accggcatcg gtcgagcagc aacgacaact cggcaagacc tgtccgtcgc tttacgacat
     1441 gcgcaatctc tttcaggtga acgttgaaga gggtcggcat ctttgggcga tggtttactt
     1501 gctacacgga tattttggcc gcgacggtcg cgacgaagct gatgcgttgt tggagcgacg
     1561 gagcggcaat cctgacaagc cgcgcattct cgaggcattc aatcagccat gcgacgactg
     1621 gctgaacttt ttcgcgttca cgatgtttac agatcgcgat ggcaagtatc agctttcagc
     1681 tctggctgaa tccgggttcg agcctttggc gcgcacgtgc aaattcatgt tgacggaaga
     1741 agcgcaccac atgtttgtcg gcgacacggg cttgagccgc gttgtcaaac gcaccgcgca
     1801 actaatgaag cagaatccaa accaagacgt gcgcgagttg ggtggaatcc cgctcgacat
     1861 cattcaaaag tacatcaact tctggttcag ctattcgctc gatctgttcg gcggcgagat
     1921 cagttccaac tccgcggatt tctttgccgc cggattgaag ggccgcttca aagaacagga
     1981 gcagtacacc gatcacatcg ccgccgaagg catcttcacg ttgatggtcg tcgaagatgg
     2041 aaagctcgtt ccacgggaag tgccgctgcg aaacgccctg aacgaagtgc tgcgcggcga
     2101 atacgtgaag gattgcgaga aaggcctcgc gcgatggaac agagcgctgg cagatgaagg
     2161 aatcagcgag cgattgttcc tgccaaacgt ccgctttcat cgccacgtag gcgaatatgc
     2221 cggtcatcat ttcgatcttg aaggcaacct gatcacgaaa gaagaattcg agcagcgaaa
     2281 gggcgagtgg ctgccaacga tggaagatcg cgaatatgtg cgcagcttga tgcactcggt
     2341 aactgagccc ggcaagatcg ccaactggat cgcgccaccg gcggcgggaa tcaaaggcaa
     2401 gccctttgag tttgaatatg tgaggctttg aagattgcgg atttcggatt gcgaaatgcg
     2461 gatttgaaag acgttgttcg gacgggtagc gcaatgaaac gaacaagaac taatcacaac
     2521 gaattgccag gcaatccgca atccgaaatc cgcatttcga aatcgcccga tctttctcat
     2581 tacgatcaaa agctcgaaat gatcctgcgc acttccgcgc gcatctttgc tgcaaagagt
     2641 taccactcaa cgtcgatgcg cgacatctcg cgcgcgacgg gcgtcagcct tgccggtctc
     2701 tatcactact gcaaatcgaa agaagagttg ctgtttctca ttcaggatca ttgttttggc
     2761 cgcgtgcttg agcagctcga gcaacgaatc aagggaatcg aagatccctt tgaaaagctg
     2821 cgcatcttta tcgacaatca cctttcgttc tttgccgcga acatggccga aatgaaggtc
     2881 ttgtcgcacg aggccgaatc gctggctggt gaattgcacc aacaagtatc gagcaggaag
     2941 cgacaatata ctcggcgcgc gcgcaagata ctttccgaag tgcagcaagc aaagagttcc
     3001 aggtcgcgag cgatgcgaaa aaacggccag cgcgcccgaa cctccggacg gctcatcgat
     3061 ctaacagtcg cgacttatgc gttgttcggc atgatgaatt ggatttacaa ctggtacgat
     3121 ccgcgcggca agttgtccgt cagtcaactc gtggataata ttactcgtct gtttctcgct
     3181 ggttttcttt ctgaaacaga cgcgcccttt gctctcgcgg attctgcaac ggtcgagaag
     3241 gtaagcatct ggcgcacggc ttaacgccaa tcagcttgaa agcgacacga tccctgatga
     3301 ctgatctgaa acgcaatctt gtagagtact gcgtcagcga aggcgtcgca gtgctgacac
     3361 tgaacgatcc gcctgcgaac acgtattcat acgagatgat gcagcagctt gatgcgcgta
     3421 ttctcgaagc gcgcatggac gaaagcgtgc aggtgatcgt catcaccggc agcggcgaaa
     3481 agtttttttg cgcgggcgcg aacattccga tgctcagcag cgttacgccc gagttcaaat
     3541 actatttctg cctgcatgcg aacgaaacgc tgtcgcgttt tgagcagact ccaaaactgg
     3601 tcatcgccgc gatcaacggt cactgtgtcg gcggcggatt agaagtagcc atggccgcgg
     3661 acattcgcgt cgcccaccgc aatgccggca agatgggttt gccggaagtt tcgctcggcg
     3721 ttttgccggg aaccggcggc acacagcgtt tggcgcgcat cgtgggcaaa tcaacagcga
     3781 ttgaactgat agcgaccgga gagctgttcg acttcgaaaa gggccagaaa cttggtcttg
     3841 ttaatcagat ccacgacgct gattcgagtg agaagttcat ggatcaagtt atgaactacg
     3901 cgcgtcagtt cacgacgccg aacaaagccg cgcgtgcggt cgggcgaata aaacgcagcg
     3961 tgcaaaccgg cgcggagatt acattcgaat cggcgctggc tttggagcgc gagctccaac
     4021 agcagttatt ccaatcggaa gatgccaaag aaggtttgga agcttacgtc aataaaagga
     4081 aaccggtatt caagggaaag taatatggag tgcgccggca gagcgcagcg gcgacggcgc
     4141 ttttgatggt gtcgctcgcg atagatcatc caaagcggtg tcgcgctgcg cttgcccccg
     4201 cactccaaag ttatgtcaga ccaactgatc aaggtcgctg aagacaacgg catcgttacg
     4261 atcacgctga accggcctga tcgtctcaac gctttcgtcg gtcacatgcg gcgcgatctc
     4321 gccgaagctt tggaggaagc ggggagcgat ccgcatgtgc gcgtcgtcgt gattaccggc
     4381 gaagggcgcg cgttctgcgc cggcggtgac gtgcaattca tggccgagtt ggttgagcga
     4441 aatgacagcg aagagttcgg gcggctgctc ggcgcggcaa ggcgggtgat cctcgcgatt
     4501 cggcaaatga caaaaccggt catcgcttcc atcggcgggc cagccttcgg agcgggattc
     4561 aatcttgcgc tcgcttgcga tctgcggatc gcctcggctg acgcgacgtt cagccagtca
     4621 tttgtgaagc tcggttttca tcctgactgg ggcggaacgt atttcctgcc acgcatggtt
     4681 acatcgaaca tcgcctgcga actatttttt cttggcgacg cgatcgatgc gcaggaagct
     4741 ttgcggcttg gcttagtcaa tcgcgttgtt gctcccgaag atctggaagc agaaacgcga
     4801 aagctcgtgg agcgtttgcg cgctggcccg gccgtttcga tcgccgcggc gaaacatgcg
     4861 gtgtacgcga gcgagcacga cactctggag cggatgctgc aatacgaagt cgaagcacag
     4921 gcgcgttgct ttgaatctga ggatggccgc gaaggcgtgc gcgcgttttt ggaaaagcga
     4981 ccaccgcgat ttacgggaag ataatgtgta ggggcagggc ttgtccctgc ccgcgtttca
     5041 atgtgaatca agaacgggca gggataaacc ctgcccctac attatgcggc taaagaatcg
     5101 agtcgcctta atcactggcg gtggacgcgg cattggtcgc gccattgctt ttgcgtttgc
     5161 gcgggacgga gcgtcgattg ccgtggctgc gcgcactcgc aagcaggtcg agagcgtggc
     5221 gaatgagatc gcaagcgagt gtggcgttca aacgctcgcg attgaatgcg acgttgcaaa
     5281 cgccgaaaac gtgaaccgtg cgtttgagcg cgcaaatgaa aagtttggtc gtgggccgga
     5341 cattctggtc aacaacgcag gcatcgtcga gactgctgcg tttttaaaga tcgatgaagc
     5401 acgctggcaa cgacatctgg cggtgaattt gacgggaacg
//
LOCUS       DASZZE010000243         4080 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_249487, whole genome shotgun sequence.
ACCESSION   DASZZE010000243 DASZZE010000000
VERSION     DASZZE010000243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4080)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4080)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4080
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_249487"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(136..1212)
                     /gene="nuoH"
                     /locus_tag="VHD88_04750"
     CDS             complement(136..1212)
                     /gene="nuoH"
                     /locus_tag="VHD88_04750"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF004741.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HVS21132.1"
                     /translation="MEDLKEVAFILAGILVAFFVVMTMVAYTVLAERRVLGFIQGRLG
                     PNRVGPGGLLQPLADLIKFIFKEDIVPDKSTRFVYFLAPVIATTAALMTIVVYPFGPE
                     IHLPIINRTIPLVIARFDVALLYVLGVTSVGVYGIALAGWSSNNKYSLMGGLRSAAQM
                     ISYELALGLALIGVILQSGTLDLYSIVEQQAGHLGISGWNFFWVQPLGFLIYLIAAIA
                     ETNRVPFDLPEAETELVAGFHTEYSAMKFALFFLSEYVNMFTVSMLATTLFLGGWNGP
                     FVHELPWLGVFYFFGKVILFLFLYIWLRGTLPRFRFDQLMSFGWKFLVPAAIINIVLT
                     ATLQWSPVFDYVSKFLKTSIGWWG"
     gene            complement(1333..3615)
                     /locus_tag="VHD88_04755"
     CDS             complement(1333..3615)
                     /locus_tag="VHD88_04755"
                     /inference="COORDINATES: protein motif:HMM:NF012602.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HVS21133.1"
                     /translation="MSTELIKVTINAKDFRVPKGARLIDVCRENQFDIPSFCYYADLA
                     LQASCRMCLVRIEKMPKLQTSCTIICTDGMVVTTQSEEIEKAQRSMLEFLLANHPLDC
                     PVCDRGGECELQELTFDWGNLEERFIEQKNATPEKYLSPMVANDPQRCILCKRCTRVC
                     DEWMGEDAIEAGNRGANTVIGTYGDWLNCSQCGNCIEVCPTGTLLDGTYRHQARPWEL
                     TQTVSTCSYCSDGCQMSLGSRGGELMRIVARDRYVNGLNGEFLCIKGRFGHPFVNHEK
                     RIRTPLIRYKKGGKLIPATWDEAIRFTAQKLDATVEAHGNNSVAIVGSPRLTNEALYC
                     LRKFAAEVVETENFAVADAFSLKPFFENLGGSLATHHDLRHAKTIVLIGGEPEELQPL
                     TGKQIRQAVRNGGAKFILVNSVRIRLSEQASQFIHLRPGSEDAAVLALTSAANDSLAA
                     RKMGVQAIELETLRAAITETQGDVVIMFGGELSYAAQAVVAQLPYIFAGEGRRVLLHP
                     LPLFNNSVGAHDMAKSEARSAIELLNAAGESIRALYVAGSFLPTHLRDHEDALTKLDL
                     LVVQELFETDTTAFADVVLPAASFAEIDGTFTNNDGFVQRVRKSIDPVHQAKPDWMIT
                     ALVAKELGVDFGFEMSASAVFREIAERVPAYADLRYPLLKDESKPAQVKHAIAPKRDL
                     SNEIEAIRRAVEAMGENSENTSDTPPVGHELFKLGTLTDKVPQFHLLAAGNPKPETFA
                     ISPLYQITIDESLKRETAIA"
     gene            complement(3626..3838)
                     /locus_tag="VHD88_04760"
     CDS             complement(3626..3838)
                     /locus_tag="VHD88_04760"
                     /inference="COORDINATES: protein motif:HMM:NF027249.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HVS21134.1"
                     /translation="MVFNITIDRDEDGVFIVECASIPGCVSQGKTKQEALKNIEDAIK
                     LCLQVRSEKGLPLTIETRQIEVAARV"
     gene            complement(3851..>4080)
                     /locus_tag="VHD88_04765"
     CDS             complement(3851..>4080)
                     /locus_tag="VHD88_04765"
                     /inference="COORDINATES: protein motif:HMM:NF022059.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NADH-ubiquinone oxidoreductase-F iron-sulfur
                     binding region domain-containing protein"
                     /protein_id="HVS21135.1"
                     /translation="GTDWLVKIFKRIEKGGGRPEDTQLLLDLCDNIEGKSFCPLGDAA
                     AWPIQSALKRFPEDFEKHLLPGLIDVRPDSH"
BASE COUNT          943 a         1147 c         1080 g          910 t
ORIGIN      
        1 ctgcaaacaa gatgaacaga attgctaaca cgctttgatt ttctctgtgc aacctctgtg
       61 ttcctctgtg tctctgtggt aaacgaacgt tacttcacca cagagacaca gagatccaca
      121 gagtttcacg gagagttatc cccaccaacc gatagacgtt ttaagaaatt tgctcacgta
      181 atcaaacacg ggcgaccatt gcagtgtcgc agtcagcacg atattgatga tcgccgccgg
      241 caccaaaaac ttccaaccaa aactcatcaa ctgatcgaaa cgaaagcgcg gcagcgtccc
      301 gcgcagccag atgtacagga aaagaaacag aatcactttg ccgaaaaagt agaagacgcc
      361 cagccacggc aactcgtgca cgaaaggtcc gttccagccg ccaaggaaaa gtgtcgtcgc
      421 cagcatcgag acggtgaaca tgttgacgta ctcggaaagg aagaacagcg cgaacttcat
      481 cgcgctgtat tcagtgtgga aaccggcaac cagttcagtc tcggcttccg gaagatcgaa
      541 cggcacgcgg ttggtctcgg caatcgccgc gatcagataa atgagaaacc cgagcggctg
      601 cacccagaaa aagttccaac cgctgatgcc gagatgtccc gcctgctgct cgactatgct
      661 gtagagatcg agcgtacccg attgcagaat cacgccaatc agcgccaggc ccagcgccaa
      721 ttcataagaa atcatctgcg ccgccgagcg caggccaccc atcaagctgt acttgttgtt
      781 tgacgaccag cccgcgagcg cgattccgta aacgcccacc gacgtaacgc cgagaacgta
      841 aagcaacgcg acatcgaacc gcgcaatgac caatgggatc gtccgattga taatcggcag
      901 gtgaatctca ggcccgaagg gatagaccac aatcgtcatc agcgctgcgg ttgtcgcaat
      961 caccggcgcg agaaagtaaa cgaagcgcgt cgatttgtcg gggactatgt cttccttgaa
     1021 gatgaacttg attaggtcag cgagcggttg cagcaagccg ccgggtccga cgcggtttgg
     1081 gccgagtcgc ccctgaataa aaccgagcac gcggcgttca gccaaaactg tgtacgccac
     1141 catcgtcatc accacgaaga aggcgacgag gatgccggct aagatgaagg caacttcttt
     1201 taggtcttcc atactaactt cagccacaga gacacggagt cacagagaaa gtcattatag
     1261 aaacctggga gtctctgaat ttcatggatg gttttatctc tgcgtctctg tgcctctgtg
     1321 gcaattcaga cttcacgcta tcgccgtctc gcgcttcaaa ctctcatcga tcgttatttg
     1381 ataaagcggc gaaattgcga acgtctcggg ctttggattt ccggccgcaa gcagatggaa
     1441 ctgcggcact ttgtcagtca gcgttccgag cttgaacagt tcgtgcccga ccggcggggt
     1501 atcggaagtg ttttcgctat tctcgcccat cgcttcgact gcgcgacgaa tcgcttcaat
     1561 ttcatttgaa agatcgcgtt tcggcgcgat cgcgtgtttc acctgcgccg gcttgctttc
     1621 atccttcaag agcggatagc gcaagtcagc gtaagcggga acgcgctcgg caatttcgcg
     1681 gaacaccgcg ctcgctgaca tttcgaatcc gaaatcaact ccgagttctt tcgcaactag
     1741 cgcggtgatc atccaatccg gcttcgcctg atgcaccgga tcgatcgatt tacgcacgcg
     1801 ttggacaaag ccgtcattgt tcgtaaacgt gccgtcgatc tcggcgaacg aagccgcggg
     1861 caaaacaacg tcggcgaatg cagttgtgtc cgtttcaaaa agttcctgca cgacgagaag
     1921 atcaagtttg gtaagtgcat cttcatggtc gcgcaagtgc gtcggcaaaa agcttcccgc
     1981 gacgtacagc gcacgaatcg attcgcccgc ggcgttcagc agctctattg cactccgcgc
     2041 ttcgctctta gccatgtcgt gcgcgccgac gctgttgttg aaaagcggca gtggatgcaa
     2101 gagcacgcgc cgaccttcac cagcgaagat gtaaggcagt tgagcaacaa cggcctgggc
     2161 tgcatagctc agttcgccgc cgaacatgat tacgacatcg ccctgcgttt cagtaatcgc
     2221 ggcgcgcaga gtttcaagtt cgattgcttg aactcccatc ttgcgcgcgg ccagtgaatc
     2281 gtttgccgcg ctagtcaacg ccagcacggc agcatcttca cttcccggcc gaagatgaat
     2341 gaactgcgaa gcctgctcgc tcaagcgaat tcgcacgctg ttcacgagaa tgaatttcgc
     2401 accgccgttg cgcaccgcct ggcgaatttg tttgccagtc aaaggttgaa gctcttccgg
     2461 ctcgccgcca attagtacga tcgttttcgc gtgcctgagg tcgtgatgag tagccagtga
     2521 cccgcccagg ttttcgaaga atggttttaa gctgaacgcg tcagcgacgg cgaagttttc
     2581 tgtttcaact acttcggccg cgaactttcg caggcaatag agggcttcgt tcgttaagcg
     2641 cggactacct acgattgcaa ccgagttgtt gccgtgggcc tcgaccgttg cgtcgagctt
     2701 ctgcgcggtg aagcgaattg cttcatccca cgtcgctgga atcagcttgc cgcccttctt
     2761 gtaacgaatc agcggcgtgc ggattcgctt ttcatgattg acgaagggat ggccgaagcg
     2821 acctttgata caaaggaatt ctccgttcag tccattgacg tagcgatcac gcgccacgat
     2881 gcgcattaat tcaccgccgc gagagccgag cgacatctga cagccatcag aacaatagct
     2941 gcaagtcgaa accgtttggg tcagttccca cggccgcgcc tgatggcgat aggtcccgtc
     3001 gagcagggtt ccggtgggac acacttcgat gcagttgcca cactgagaac aattcaacca
     3061 atcaccgtac gtgccaatga cggtgttcgc tccgcgattg cccgcttcga tcgcgtcttc
     3121 gcccatccat tcgtcgcaga cgcgcgtgca gcgtttgcag aggatgcagc gctgcggatc
     3181 gtttgcgacc atcggtgaca gatacttttc cggggtggca ttcttctgtt caataaagcg
     3241 ttcttccaga ttgccccaat cgaaagtcaa ctcctgtaac tcgcattcgc cgccacgatc
     3301 gcagacggga caatccaggg gatgattggc gagcaggaac tcgagcatcg accgctgggc
     3361 tttctcgatc tcctcgctct gtgtcgtgac caccatcccg tcggtgcaga tgatggtgca
     3421 ggaggtctgg agcttcggca tcttctcgat gcgcaccaga cacatgcggc aggacgcctg
     3481 caaagccagg tcggcgtaat aacagaacga cggaatgtcg aactggtttt cgcgacacac
     3541 gtcgatcagg cgcgcgcctt tgggcacgcg aaagtctttg gcgttgattg tgactttgat
     3601 tagttcggta ctcatttgaa actgcttaga cgcgggcggc aacctctatt tgtcgggttt
     3661 caattgtcag cggcagaccc ttctcagacc ggacttgcag gcagagcttg atcgcatctt
     3721 cgatgttctt aagagcctcc tgcttagtct tgccctggct cacgcatcca ggaatggatg
     3781 cgcactcgac tataaaaacg ccgtcttcgt ctctgtcgat ggttatgttg aataccatat
     3841 acgcgcctcc ttagtgtgaa tcaggcctga catcgattag tcccggaagt agatgcttct
     3901 cgaaatcttc cggaaatctt ttcagggctg attgaatcgg ccatgcagcc gcatcgccga
     3961 gagggcagaa cgatttgcct tcgatgttgt cacaaagatc gagcagcaac tgcgtgtcct
     4021 caggacggcc gccgcctttt tcgatgcgct tgaaaatctt aaccagccag tcggtgcctt
//
LOCUS       DASZZE010000244         5225 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_7042, whole genome shotgun sequence.
ACCESSION   DASZZE010000244 DASZZE010000000
VERSION     DASZZE010000244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5225)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5225)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5225
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7042"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(134..694)
                     /locus_tag="VHD88_04770"
     CDS             complement(134..694)
                     /locus_tag="VHD88_04770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21136.1"
                     /translation="MLVDSFAPNSDASETHDITIAASPDVVYRALWTADLGGSLIIKF
                     LLGLRSLPEFAAHPCRSLPRDRKITLQTLIDSGFGVLAEQPGKEIILGVSGKFWLPTG
                     NLSPFNREDFDRPVPAGLARAVWNFNVEGVNDQTTLSTETRVICGDGSSRRKFRAYWF
                     FVRPFSGLIRRLMLRAIRRACCVAGR"
     gene            776..1255
                     /locus_tag="VHD88_04775"
     CDS             776..1255
                     /locus_tag="VHD88_04775"
                     /inference="COORDINATES: protein motif:HMM:NF018663.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HVS21137.1"
                     /translation="MQKITPFLWYDDKAEESANFYVSIFKNSKVLSVNRYGEAGPGPK
                     GSVMVAEFQIEGQKFVALNAGPRFKFTEAISFVINCETQEEVDYFWEKLTADGGAESM
                     CGWLKDKYGLSWQVVPTILTELMKDKDPAKAQRVMQAMLQMKKIDIPTLKRAYEQGT"
     gene            1299..1694
                     /locus_tag="VHD88_04780"
     CDS             1299..1694
                     /locus_tag="VHD88_04780"
                     /inference="COORDINATES: protein motif:HMM:NF020397.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1801 domain-containing protein"
                     /protein_id="HVS21138.1"
                     /translation="MKKTCLKSAPARDVDEYLAGVPKEARAVLEKLRQTIKAAAPMAS
                     EVISYQMPMYKYHGMVIGFAAFKDHCSIFPGSAVMDAHKEELKRYSTSKGTIRFPVNQ
                     PLPATLVKKLVKTRIKENEARAAKRRERS"
     gene            1691..2671
                     /locus_tag="VHD88_04785"
     CDS             1691..2671
                     /locus_tag="VHD88_04785"
                     /inference="COORDINATES: protein motif:HMM:NF013989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HVS21139.1"
                     /translation="MNIVLWIIQVLLALLFLFAGGTKLGLPIDVMKSMGSPNQVQLPG
                     LLIRFIGVCEVLGGLGLILPGLLRIRRGLTPLAAAGLVIIMIGAVALTFIGDGVRPSV
                     FPLLVALLLAFVAYGRRGLVQQLEHTCEEGGIRRKTMQKLVVFNHVSLDGYFVDANGD
                     MSWAKADHQDPEWNSFVAENASGGGTLVFGRITYELMASFWPTPVAIEHMPEVAERMN
                     NLPKVVFSKTLDQASWNNTKLLKGDLVAEVRKLKQEPGEGMVILGSGSIVSQLAPEGL
                     IDAYQMVVNPIVLGKGRTMFEGVKEKLALRLTKTRAFGNGNVLLCYEPKR"
     gene            2683..3099
                     /locus_tag="VHD88_04790"
     CDS             2683..3099
                     /locus_tag="VHD88_04790"
                     /inference="COORDINATES: protein motif:HMM:NF018663.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HVS21140.1"
                     /translation="MQLNPYLNFNGQAEAAFKFYEPVLGGKITFSMTWGEMPGADQFP
                     AETHKLIMHATLSVGDAVLMGADSPPGRYQQPKGMNVSLHFKDIAEGERIFNSLSENG
                     SVTMPFQKTFWSPGFGMCVDQFGIPWMVNCEGVATS"
     gene            complement(3182..4960)
                     /locus_tag="VHD88_04795"
     CDS             complement(3182..4960)
                     /locus_tag="VHD88_04795"
                     /inference="COORDINATES: protein motif:HMM:NF012688.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase"
                     /protein_id="HVS21141.1"
                     /translation="MNPQYQLITNGEDLRRATDELFNKQAIGLDTETTELDPYLGRLR
                     LVQLASANDVYIVDLNAFSDGDFSKSEALEPLRQLLAAPRPIKIAHNAKFDAKFIKHN
                     FGVDLGGLFDTLLASQLVSAGDIEERHGLNAIAARYLNEEVDKAERLSNWEFELSEAQ
                     LQYAARDAAVLIPLRDKLIERIKSLDLIQCAQLEFECVMPVVDLELAGFYMDKQRWLE
                     QLAVVEKRRAELANELQEMLGEGVAQASLFGPPRANINLDSQLQVTDALNRLGIPVPD
                     STRNWKLQPLAAQYPVVAKLLEYRTMQKALTSYGHNVIEFINPKTGRLHADFRQIGAP
                     TGRFACTNPNIQQVPHAAEYRRCFMGHPAGRKLVIADYSQIELRILAEFSGDQGFIDA
                     FNSGADLHRVTAAQVFNVAQDQVTADQRSFAKRLNFGVVYGIGAQRFSMMTGLSVTEA
                     ENVLRRYFSTYRGLDAYLRKSANRAVSEKQARTGSGRLIRFNFDASDRQQVSMTQRNG
                     KNAPIQGTSADILKRALRLLNDNLRDTSAKLVNIIHDEIVVEVDAGESEAIAQKVERA
                     MCAAGEEYLTTVPVKVEYHIACEWAK"
BASE COUNT         1216 a         1380 c         1519 g         1110 t
ORIGIN      
        1 gtgtattagt cgcttgagcg cgcgaattat atgactctga tgcggaaaat gctcagttcg
       61 aagcggggca ctagcccgat cgtgagggag ggctcctttc agcgcggaca cagagccctc
      121 cctgacggtc gggctaacgc cccgccacac aacacgcgcg cctaattgcc cgcagcatca
      181 gccggcgaat caggccgctg aatggccgga cgaaaaacca gtaggcgcga aactttcggc
      241 ggctactgcc gtcgccacag attacgcgcg tctccgtgga caaggtcgtc tgatcgttaa
      301 cgccttcgac gttgaaattc cagacggcgc gcgcgagacc cgccggcacc gggcgatcaa
      361 agtcttcacg attgaaaggc gaaagattgc ctgtcggcag ccagaacttt ccgcttactc
      421 ccaggataat ctcttttccc ggctgctccg cgagcacgcc gaagccggaa tcgatcaagg
      481 tctgtagcgt gatctttcga tctcgcggta gagatctaca cggatgcgcg gcaaactccg
      541 gcagtgatcg cagacccaac aggaacttga ttatcaggga gccgcccagg tccgcagtcc
      601 agagcgcgcg gtagacaacg tcgggcgacg cggcgatggt aatgtcgtgc gtctcgctgg
      661 catcagaatt cggcgcgaat gaatctacta gcatgcacta cactgaagtt ttgatctata
      721 tcctcgcgga tgatattaaa ggagttcgga aacaacaaac caagaggaga ctacgatgca
      781 aaaaatcacg ccgttcttgt ggtacgacga caaagccgaa gagtcagcga atttttatgt
      841 ctctattttc aagaactcaa aggttctgag cgttaatcga tatggcgaag cagggccggg
      901 accgaaaggc tctgtcatgg tcgcggagtt ccaaatcgag ggccagaaat tcgtggcctt
      961 gaatgccggc ccgcgcttca aattcacgga agctatatcg ttcgtgatca actgcgagac
     1021 gcaggaagag gttgattatt tttgggagaa actcactgct gacggcggcg cagaaagcat
     1081 gtgcggctgg ctcaaagaca agtatggtct gtcgtggcag gtcgttccca ctatcttgac
     1141 tgaattgatg aaggacaaag acccggcgaa agcgcaaagg gtcatgcagg cgatgctgca
     1201 aatgaagaag attgacatac cgaccttgaa gcgagcgtac gagcagggaa cgtaaacact
     1261 gaaatcaaag cgtgccgttg catgagagga gaagcaacat gaaaaagact tgtctgaaga
     1321 gcgctccagc aagagacgtg gacgagtatc ttgccggcgt gcctaaagaa gcgcgcgccg
     1381 tgctcgagaa actgcgccag acgatcaaag ccgccgcgcc catggcttcg gaagtaatca
     1441 gctatcagat gcccatgtac aaataccacg gaatggtgat tgggtttgcg gcgttcaagg
     1501 atcactgcag tattttcccc ggatcggccg tcatggacgc gcacaaggag gaactcaagc
     1561 gctacagcac gtcgaaaggc acgatccgtt ttccagtcaa ccagccgctg cccgccacgc
     1621 tggtaaagaa gctcgtcaag acgcggatca aagagaacga ggcgcgcgca gccaaacgaa
     1681 gggagcgatc atgaacattg tcttgtggat cattcaggtg ttactcgctc tgctcttttt
     1741 gttcgccggc ggaaccaagt tagggctgcc gattgacgtg atgaaatcaa tgggctcacc
     1801 caaccaggta caactcccgg ggctgctgat ccgattcatc ggcgtctgcg aagtgctcgg
     1861 cgggctgggc ctgattctgc cagggctcct gcggattcgg cgtggtctga caccgctggc
     1921 tgccgctggt ttggtgatca ttatgatcgg cgctgtcgcg ctgaccttta ttggtgacgg
     1981 cgtccggcca tcggtgttcc cgctgttggt ggcgttgctg ttggcgtttg tagcttacgg
     2041 ccgcaggggg ttggtgcagc aattagaaca cacttgtgaa gaaggaggta taaggagaaa
     2101 aaccatgcag aaactagtcg tcttcaatca cgtgtcgctg gatggttact ttgtggacgc
     2161 gaacggcgat atgagttggg ccaaagcaga tcaccaggac ccggagtgga attcatttgt
     2221 cgcagaaaac gccagcggcg gaggtacgct ggtgttcggt aggatcacct acgaactcat
     2281 ggcaagcttc tggcccacac cggttgcgat cgagcatatg cctgaggtgg ccgagcggat
     2341 gaacaatctg ccgaaagtcg tattttcgaa gacgctcgat caggcgtcgt ggaacaatac
     2401 caagctgttg aagggcgacc tggtggcgga agttcgcaag ttgaagcaag agccgggaga
     2461 gggcatggtg attttgggaa gcggcagcat tgtttcgcaa ttggctccgg agggtttgat
     2521 tgatgcatac cagatggtcg tgaaccctat cgtcctgggc aagggcagga cgatgttcga
     2581 aggcgtcaaa gagaagctgg cattgaggct gacaaaaacg cgcgccttcg gcaatgggaa
     2641 tgtcttgctc tgctacgaac cgaaaaggta aaggagaaca aaatgcaatt gaatccatat
     2701 ctgaatttca atggccaagc ggaggccgct ttcaaattct acgaaccagt cctgggcggt
     2761 aaaatcacct tctcgatgac ctggggtgaa atgcccggcg ccgatcagtt tccggccgag
     2821 acgcacaaac taatcatgca cgcgacgctc agtgtcggcg acgcagtact gatgggagcc
     2881 gattctccgc caggccgtta ccaacagcca aaaggcatga acgtgtcgct tcacttcaaa
     2941 gacatcgctg agggcgagcg catctttaat tcgttgtccg agaatggaag cgtgacgatg
     3001 ccattccaga agacgttctg gtcgcccggt tttggcatgt gcgtcgatca gtttggcatt
     3061 ccgtggatgg tcaactgcga gggcgttgcc acaagttaat cgtacctctc tgcgtctcag
     3121 cggtgaggtt caaaatgcaa tcacgcagag ttcgcagacg ttgagcagag aaaaaagttg
     3181 actatttcgc ccactcacaa gcgatgtgat attcaacctt caccggcacg gtcgtcagat
     3241 actcttcgcc cgcggcgcac atcgcgcgtt cgactttctg cgcgatcgct tctgattcgc
     3301 cggcatcgac ttcgacaacg atctcgtcgt gaatgatgtt tacgagctta gcggacgtat
     3361 cgcgcagatt gtcgttgagc aagcgcagcg cgcgtttgag aatatctgcg ctggtgccct
     3421 ggatcggcgc gttcttgccg ttgcgctgcg tcatcgagac ctgctgacga tctgaagcgt
     3481 cgaagttgaa acgaatgagt cgccctgaac cggtgcgcgc ctgcttctcg ctcacggcgc
     3541 ggttcgccga cttgcgcagg tatgcatcca gaccacgata agttgaaaag taacgacgca
     3601 gaacattctc agcttcagtc acactcaatc ccgtcatcat ggaaaagcgc tgcgcgccga
     3661 tgccgtacac gacgccgaaa ttcaaacgct tggcaaacga acgctgatcg gcggtgactt
     3721 gatcctgcgc gacgttgaaa acttgcgctg cagtgacgcg atgcaagtcg gcgcccgaat
     3781 tgaacgcatc gatgaaaccc tgatcgccgg aaaactcagc aaggatgcgc agttcgattt
     3841 gcgagtagtc agcgattacc agttttcgtc ctgcgggatg gcccatgaag cagcgtcgat
     3901 attcggccgc gtgcggcacc tgttgaatgt tcggattcgt gcacgcaaag cgcccggtcg
     3961 gcgcgccgat ctgacgaaag tccgcgtgca ggcgaccagt ctttggattg atgaactcga
     4021 tcacgttatg accatagctg gtcagcgcct tttgcatcgt gcggtattcg agcagcttcg
     4081 cgacgaccgg atactgcgcg gccagcggct ggagcttcca gttgcgcgtg gaatcgggaa
     4141 cgggaatgcc cagacgattc agcgcatcgg tcacttgtag ttgcgaatca agattgatgt
     4201 tcgcgcgcgg cggcccgaac agcgaagcct gcgccactcc ttcacccagc atctcttgta
     4261 actcattcgc cagctccgcg cgtctcttct cgacgactgc aagctgctca agccagcgtt
     4321 gcttgtccat gtaaaaaccg gccagctcca aatcgacaac cggcatcacg cactcaaact
     4381 caagctgcgc gcattggatc aaatcgagcg atttgattct ctcgatcagt ttgtcgcgga
     4441 gtggaatgag tacggccgca tcgcgcgcgg cgtactgcaa ctgcgcttct gaaagttcga
     4501 attcccaatt gcttaaccgc tcggccttat cgacttcttc gttgagatag cgcgcggcga
     4561 tcgcgttcag gccgtgacgt tcttcgatgt cgcccgcgga aacaagctgg ctcgccagca
     4621 acgtgtcgaa caaaccgccg agatcgacgc cgaaattgtg cttgatgaac ttcgcgtcga
     4681 acttcgcgtt gtgcgcgatc ttgatcggtc gcggcgcggc gagcagttga cgcaacggct
     4741 cgagcgcttc gctttttgaa aagtcgccgt cagagaacgc gttgaggtcg acgatataaa
     4801 cgtcattcgc agaagcaagc tgaactaagc gcaagcgacc gaggtaagga tcaagctcag
     4861 tggtttcggt atcgagcccg atggcttgct tattaaagag ttcgtccgtc gcgcggcgca
     4921 gatcttcgcc gttagtgatc agttgatatt gcgggttcat cattgaattg atttagccac
     4981 aagaaggcac aagggggaac caccggggac aactcgtgtc tcccttctcc cgttgggaga
     5041 agggccgggg aagagggggc gcgtagcctc aggccggctt cgtaacaccc tctccccaac
     5101 cctcccatag tgtacagacc ggagagatgg gtaacaggtg tccatagaca taggtaacac
     5161 ttttgttgct cagttgcctg cgctcatttg gcggcccaca tcgatcggat cgacgtggtt
     5221 atggt
//
LOCUS       DASZZE010000245         2988 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_7045, whole genome shotgun sequence.
ACCESSION   DASZZE010000245 DASZZE010000000
VERSION     DASZZE010000245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2988)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2988)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2988
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7045"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            52..1413
                     /locus_tag="VHD88_04800"
     CDS             52..1413
                     /locus_tag="VHD88_04800"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HVS21142.1"
                     /translation="MLPFLNLSADKNDEYLSDGMTEELLNVLTKVKGLRVPGRSSSFA
                     FKGKNEDGIFRKVGDQLHVNAVLEGSVRKAGDKLRITAQLINVADGFHLWSETYDRDM
                     KDILAVQSDVAKRVVQALQVELGVDEARALAKKSTENPEAHRLYLLGRYHFAKFTRAG
                     WANAIHYYEQALQVDPDFALAYCGLADTYGWAGGETLPGREAWAKEMEFAQKALALDP
                     NLAEAHLAMGTALFSVLDPHASEKELDRAVELNPNLALAYDQYGFTFAEMGRHDESIA
                     AEKKALELDPLNTLLNTDLAFFLYWARRYDDSIAQIRKTLELDANNALAHQLLGWCMV
                     WKGNVTEAKTEFQKATTLDDLPWYVGSLGYACAVSGDRAKAEQILRDLDELAKKQYVS
                     PGDRVPVYLGLGEKAKALDWFEKAYDDRDPALWWNADQLYDSIRNEPRFKAVMQKIAG
                     VKR"
     gene            1410..>2988
                     /locus_tag="VHD88_04805"
     CDS             1410..>2988
                     /locus_tag="VHD88_04805"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HVS21143.1"
                     /translation="MKIDNFFAELKRRNVYKVAVAYAVIAWLLIQASSILFPTFEAPP
                     WVMKVFVAVVLLGFPIALILAWAFELTPEGIKRAEDVDLSESITHRTGQKLTALIVFV
                     AVVAAVLLLLQLTRHKPAVATGNSATASAVPKAALEVIAEKSIAVLPFENFSEDKAFA
                     FFADGVQDEILTDLAKIADLKVISRTSVMQYKNTATRKLPEIAQALKVAHVLEGSVQR
                     SANRVRVSAQLIDARNDTHVWAEKYDRELADVFAIQSEIAQKIADQLQAKLSPTEKGA
                     ISERPTSDLAAYDLYLRAKELIYDLNFSRAKENAFKAVQLLEQAVAHDPTFLLAYCQL
                     AYAHDRIYFSNFDRTETRLALAETNVRAAVHLQPDSGETHLAQAIHFYWGYRDYDGAR
                     KELAKAQAALPNNARIFEFLGLIDRRQGRWNEAVRNLERALDLDPRNQDILGDLAPTY
                     WMLRRNGEATALDNRALALRPQSAFLRAITVSSVETDANMAPLRATLNKIEAEGPASA
                     AEVAGISFQLALRERDPA"
BASE COUNT          682 a          822 c          864 g          620 t
ORIGIN      
        1 agtgtttcga cctctggcgc agcgcccgcc gtcgatcaga aatcgatcgc cgtgctgccg
       61 ttcttgaacc tgagcgcgga caagaacgac gaatatctga gcgatggcat gaccgaggaa
      121 ctgctcaacg tgctgacgaa agtgaaagga ctgcgcgtgc cggggcgcag ttcctcgttt
      181 gctttcaagg gcaagaacga ggacggcatc ttccgcaaag tcggcgacca attgcacgtc
      241 aacgccgtgt tggaaggcag cgtgcggaag gccggcgaca agctgcggat caccgctcag
      301 ctcatcaacg tagccgatgg gtttcatctt tggtccgaaa cctatgaccg cgatatgaag
      361 gatattctcg ccgtgcaaag cgacgtggcc aaacgcgttg tccaggcgtt gcaggtagag
      421 ttaggtgtcg acgaagcgcg cgcgctggcg aagaagtcga ccgagaatcc ggaagcacat
      481 cgtctctatc tgctgggccg ttatcatttc gccaagttca ctcgcgcagg ctgggctaac
      541 gcgatccact attatgaaca ggcactgcaa gtagatcccg acttcgcttt agcttattgc
      601 ggactagctg acacctacgg ctgggccgga ggggagacac tgccggggcg agaagcgtgg
      661 gccaaagaaa tggaatttgc gcaaaaggcg ctggcgctcg atccgaatct cgccgaagcg
      721 cacctagcca tggggacagc tctcttctcc gtgctggatc ctcacgcctc cgagaaggaa
      781 ctcgaccgcg cagtggaatt gaatcccaac ctcgctctgg cttatgatca atatggtttt
      841 accttcgcgg aaatgggccg ccatgacgag tcgatcgcgg cagaaaagaa agcgctggaa
      901 ctcgatccac taaatacttt actgaataca gatctcgcct tttttcttta ctgggcgcgc
      961 cgttacgacg actcgattgc gcaaatccgc aaaactttgg aattggatgc gaacaatgcc
     1021 ctggcccacc agttgttagg ctggtgcatg gtctggaaag ggaatgtgac tgaagccaag
     1081 acggagtttc aaaaggccac gacgctggat gacctgcctt ggtatgttgg ttcgctcggc
     1141 tacgcctgcg ccgtcagcgg tgatcgtgct aaagcagagc agatacttcg ggatttggac
     1201 gagttggcaa agaagcaata tgtctcaccg ggggatcgag tgccggttta tttgggactt
     1261 ggcgaaaagg caaaggcctt ggactggttc gagaaggcct atgacgaccg ggatcccgcg
     1321 ttgtggtgga acgccgacca gctttacgac agcatccgca acgagccgcg cttcaaggcg
     1381 gtgatgcaga agatcgctgg cgtaaaacga tgaagatcga caacttcttc gccgaactga
     1441 agcgacgcaa tgtctacaaa gttgcggtcg cgtacgccgt catcgcgtgg ctgctgattc
     1501 aggcgtcgtc gatcttgttc ccgaccttcg aagcgccgcc atgggtgatg aaagtgttcg
     1561 tggcggtcgt gctgctggga tttccgattg cattgattct tgcctgggcc tttgaactta
     1621 cgccggaagg aatcaagcgc gcggaagatg tcgatcttag cgaatcgata acgcaccgaa
     1681 ctgggcagaa gttgaccgcc ctgattgtct tcgtcgcagt cgtcgcagcg gttttactcc
     1741 tgcttcaact gacgcggcac aagcccgcgg tggctacagg gaactccgcc accgcttcgg
     1801 ccgttccgaa ggcggcgctg gaggtcatcg ccgagaaaag tatcgctgtt ctgccgtttg
     1861 aaaatttcag tgaggacaaa gcattcgcat tctttgccga tggcgtgcag gacgagattc
     1921 tgactgatct cgcaaaaatt gctgatctga aagtgatcag tcgcaccagc gtgatgcagt
     1981 acaaaaacac ggcgacacgc aagcttccgg agatcgcgca ggcgttgaaa gtcgcgcacg
     2041 tgctggaagg cagcgtgcag cgctccgcga accgtgtccg ggtaagcgcc caattaatcg
     2101 atgcccgcaa tgacacgcat gtgtgggccg aaaaatatga ccgcgagttg gccgatgtct
     2161 ttgccattca gagcgagatt gcccaaaaaa tcgccgacca acttcaggcc aagctttcgc
     2221 caacggagaa gggtgcgatc agcgagcgcc ctacctctga cctggcggct tatgaccttt
     2281 acctccgagc aaaagaactc atctacgacc ttaacttctc tcgcgcaaaa gagaatgctt
     2341 tcaaagcggt gcaactcctt gagcaagccg tagcgcacga ccccaccttt ctcctcgctt
     2401 attgtcagct cgcctatgcg cacgatcgaa tatacttctc taacttcgat cgcaccgaaa
     2461 cgcgcctggc gttagccgaa acgaatgtca gagcagcagt tcacctccaa ccggattcgg
     2521 gcgagacaca tctcgcgcag gcgattcatt tttattgggg ttatcgcgat tacgacggag
     2581 cgcgaaagga actggccaaa gctcaagctg ccctgcctaa taatgcgcgc atctttgagt
     2641 ttctcggtct aatcgatcgg cgccaggggc gctggaacga ggctgttcgc aaccttgaac
     2701 gcgcactcga cctggatccg cgaaatcagg atattctcgg cgatctggcg cctacttact
     2761 ggatgttacg cagaaacgga gaggcaaccg cgttggacaa tcgtgcgttg gcgttgcggc
     2821 cgcagagcgc ctttctgcga gccatcaccg tatcgagcgt cgagacggac gcgaacatgg
     2881 cgcccttacg tgccacgctg aacaagatcg aagcggaggg tccggcgtca gcagccgaag
     2941 tggccggcat ctcgtttcaa ctcgcacttc gcgagcgcga ccctgccg
//
LOCUS       DASZZE010000246         5695 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_54802, whole genome shotgun sequence.
ACCESSION   DASZZE010000246 DASZZE010000000
VERSION     DASZZE010000246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5695
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54802"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..903
                     /locus_tag="VHD88_04810"
     CDS             <1..903
                     /locus_tag="VHD88_04810"
                     /EC_number="2.4.2.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008479 - tRNA-guanosine(34) queuine
                     transglycosylase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HVS21144.1"
                     /translation="VWSLGKLRKITEEGTEFRSHIDGALCFLSPEISMEVQAVLGAEI
                     AMAFDECAPGEASHEEARQSMELTLGWAKRSREAFDRFRTASGSDRVERAGKDASEPQ
                     ARMPALQQSLFGIIQGASHLDLRRESLERTVEIGFDGYAIGGLSVGEEKPAMLDVIED
                     IAPRMPADKPRYLMGLGTPQDLIDAVARGVDMFDCVLPTRNGRTGQAFTSRGKLNIKN
                     ARHAQDQRPLDESCRCSVCLRHSRAFIRHLYLAGEMLASILLTHHNLAFFLDTMRGVR
                     QAIRSRQFAKFQREFTEQLNSGLE"
     gene            945..1250
                     /gene="yajC"
                     /locus_tag="VHD88_04815"
     CDS             945..1250
                     /gene="yajC"
                     /locus_tag="VHD88_04815"
                     /inference="COORDINATES: protein motif:HMM:TIGR00739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HVS21145.1"
                     /translation="MIIFLMFLQGIGGLGGALLPMILIFGVFYMLLIRPQQKKQRQLQ
                     ATIAELKTGDKVVTTGGVIGTITAVRDTSFLIRSADKSILEIARSAVAGVDLEEPKS"
     gene            1293..3005
                     /gene="secD"
                     /locus_tag="VHD88_04820"
     CDS             1293..3005
                     /gene="secD"
                     /locus_tag="VHD88_04820"
                     /inference="COORDINATES: protein motif:HMM:TIGR01129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HVS21146.1"
                     /translation="MKKKNLLQRSIIIAIVTVVGFYVVIGPHGRRPHFKDFTYSGFKA
                     TLAQNIHLGLDLKGGSHLVMRVKIEDYLKRLTEDNATAAQNAAKDAGFEVKETHAETG
                     GDYRVVLQAGDASKAQAIRDAVEKKVEISDNRGWSFSASGPMLTWSLNGATQRTLAES
                     ATDQALKIIESRINTIGVAEPTLQRHGAQNSHEILLQMPGIQDPEHVKKLIGDPSHLE
                     LVHVISEQNPAPSKTYLTKEEAIASLNSGGAPPANRRVLAYTERSDLATTTTQDATSN
                     APKPTKWVVVESPAIIDGAELRSATASQGRAGGDEYEIDFSLKKSGADKFGAWTGANV
                     NEYMGVVLNDEVKSIAFIKSQIFDQGQISGRFSKQTADDLALTLRSGALPAAIQYEEE
                     RTVGPSLGADSIRSGVRASVLGLALVVFFMLFYYRGSGINAVIALLLNMVLMIAGLII
                     FGATLTLPGIAGMILTIGMAVDSNVLIFERIREELRSGKTVPSAVEQGFGHAFVTIID
                     THVTTIVSSLFLYVFGAGPIRGFAVTLVLGLLVNLFSAVYVSRTIFIWLLSRKGRRVQ
                     SLSI"
     gene            3089..4192
                     /gene="secF"
                     /locus_tag="VHD88_04825"
     CDS             3089..4192
                     /gene="secF"
                     /locus_tag="VHD88_04825"
                     /inference="COORDINATES: protein motif:HMM:TIGR00966.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HVS21147.1"
                     /translation="MIQIFKNSNIDWLGKRRYFIGLSILLLLAGMGTAFYRHKFHPNG
                     TEAFNLGVDFKGGTVVTARFKQPLSVEALRTAIDRAGVANSVIQQALDKPGEFLIKVP
                     HQGSEETTSENQAGVDAARANVKKALDSFGPEAEPNKNLEDDPKAVYKIEGTEAVGQV
                     ASKQLRNQAIAVTIAALVGMLLFIAFRYEWTYGASAVIAVFHTVLVTLGLFSMFQWEI
                     NLTVIAALLTLVGFDVNDTIVIFDRIRENRKLYRRMSLYDVTNLSINQTLSRTVITSG
                     LVFLSVVALVLLGGETLRPFSLALLMGIVFGTYDTIAVAGPIMVWWEKRLEAANKLPA
                     TAREAGIQTSGRGSARGASGRNEVAKASRAARV"
     gene            4624..5391
                     /locus_tag="VHD88_04830"
     CDS             4624..5391
                     /locus_tag="VHD88_04830"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HVS21148.1"
                     /translation="MFENLVESGSHSADVKRKGSFLMGTLAVYGVLIVAGLIAGILMA
                     PAYIDQQNLELTALIAPVPVPQKQAEAKPEKVNIDKNVDVRKELIAAVDRADLVPKTI
                     SAKASDIPPMRNNVVTMLGGSNSNAVAPVAPGAGTGQIISTPAKVETSDAPPPPPKPT
                     PHAPISGGVLNGQAIRLVQPNYPAIAKTAHASGQVRVQILIDENGNVISASAVSGHPL
                     LQAAAAAAARASKFTPTKLSGQPVKVSGVIIYNFLPQ"
     gene            5485..>5695
                     /locus_tag="VHD88_04835"
     CDS             5485..>5695
                     /locus_tag="VHD88_04835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21149.1"
                     /translation="MTILTSILGPKVFGLLFALWQASPAASEAETGGQEINFTEMVKH
                     MGPVAITVVIILLIMSVYSIAIMVER"
BASE COUNT         1237 a         1460 c         1705 g         1293 t
ORIGIN      
        1 gtctggagtc ttgggaagtt aagaaagatt actgaagagg gaactgagtt tcgctcgcac
       61 atcgacggtg cgctttgctt tctgtcgcct gagatttcga tggaagtgca agctgtgctg
      121 ggcgcggaga tcgcgatggc ctttgacgaa tgcgcgccgg gtgaagcgag tcatgaagaa
      181 gcgcgacaaa gtatggagtt gacgttgggc tgggcgaaaa gatcgcgcga ggcttttgat
      241 cggttcagaa ccgcgagtgg tagcgaccgg gtagaacgag ctggcaaaga tgccagcgaa
      301 ccgcaggcaa ggatgccggc gctccaacaa tcgctgtttg gcatcattca aggcgcgtcg
      361 catctggatc tgcggcgcga gagtttggag cgcacagttg agattggttt cgacggctac
      421 gcgattggcg gactgagcgt cggcgaagaa aagccggcga tgttggacgt tatcgaagac
      481 atcgcgccgc gcatgccagc cgacaaaccg cgctacttga tgggactcgg cacgccgcaa
      541 gacttgatcg acgcggtggc gcgcggcgtt gacatgtttg attgcgtgct gccgacgcgt
      601 aatggccgca ccggccaggc gttcacttcg cgcggcaaat tgaacatcaa gaacgctcgc
      661 catgcgcagg atcagcgacc gttggacgag tcgtgccgct gctcagtctg tcttcggcat
      721 tcgcgcgcgt tcattcgtca tctctatctg gcgggcgaaa tgctcgccag cattctgttg
      781 acgcaccaca atctggcgtt cttccttgac accatgcgag gcgtcaggca agctatccgt
      841 tctcgtcaat tcgcgaaatt tcagcgagag ttcactgagc aactgaactc gggattggaa
      901 tgagcgccgg cgcgaagtgc gcttcgcaaa ctccgcgaca aaatatgatt atatttctaa
      961 tgttcttgca gggcatcggc gggctgggtg gcgcgctcct tccaatgatc ctgatcttcg
     1021 gcgtgttcta catgttgctg atcagaccgc aacaaaaaaa gcagcgccaa ctgcaagcga
     1081 ccattgccga attgaaaacc ggcgacaagg tcgtcacgac cggcggagtc atcggcacga
     1141 tcaccgccgt gcgcgacacg agttttttaa tcagaagcgc ggacaagtcc attctggaaa
     1201 tcgcgcgttc ggcggtggcc ggagttgatt tggaagaacc gaagtcgtag ccgagagtta
     1261 acacaggcga aagcctgtgc cacttggaat tcatgaaaaa gaagaatctc cttcagcgat
     1321 ccatcatcat cgcgatagta actgttgtcg gtttttacgt cgtgatcgga ccgcacggac
     1381 ggcggcctca tttcaaagac ttcacttact ccggattcaa agctacgctg gcgcaaaaca
     1441 ttcaccttgg gctggacctc aaaggcggct cgcatctggt catgcgcgtc aagatcgagg
     1501 actacttgaa gcgcctgacc gaagacaacg cgaccgcggc gcagaacgcg gccaaagacg
     1561 cgggctttga agtaaaggaa acgcacgccg aaaccggcgg cgattaccgc gttgtgctcc
     1621 aggcaggtga tgcgtccaaa gcgcaggcca ttcgcgatgc ggttgagaag aaggtggaaa
     1681 ttagcgataa ccgaggctgg tcgttttccg cgtctgggcc aatgctgacc tggtctttga
     1741 acggagcaac tcagcgcacg ctggcagagt cggcgacgga tcaggcgctg aagattatcg
     1801 agagccgcat caacacgatc ggcgtagctg agccgactct gcaacgtcac ggcgcgcaaa
     1861 actctcacga gattcttttg caaatgcccg gcatacaaga tccggaacac gtgaaaaagc
     1921 taattgggga cccgtctcac ctcgaattgg tccacgtgat cagtgaacag aatccggcgc
     1981 cttctaaaac ttatctaacg aaggaagagg cgattgcttc gctgaacagc ggaggcgctc
     2041 ctcccgcgaa tcgccgcgtc ctagcttata cagagcgatc tgatctggcc acgacgacta
     2101 cgcaagacgc gacctcgaat gcgcccaagc caacaaagtg ggtagtcgtc gaatcaccgg
     2161 caattatcga cggagctgaa ctgcggagtg cgactgcgtc tcaggggcga gccggcggtg
     2221 acgaatacga aatcgacttt tcactgaaga aaagcggcgc cgataagttt ggtgcgtgga
     2281 ccggcgcgaa cgttaacgag tacatgggcg tcgtgctcaa cgacgaagtg aagtcgattg
     2341 cctttattaa gtctcagatt ttcgatcagg gccagattag cggcagattc tcgaagcaaa
     2401 ccgccgacga tctcgcgctg acgcttcgct cgggcgcact gccggcggcg attcaatatg
     2461 aggaagaacg aaccgtcggc ccaagtttgg gcgcggattc gattcgttcc ggagtcagag
     2521 cgtcagtgct tggcttggca ctggttgtct ttttcatgct cttttactat cgcgggtccg
     2581 gtattaatgc agttatcgct ttgttgctca acatggttct gatgatcgcc gggctgatca
     2641 tctttggcgc gacgctgacg ttgccgggca ttgccggcat gattctgacg attggcatgg
     2701 ccgtggattc gaacgtgctg atctttgagc gcattcgcga ggagttgcgc tctggcaaaa
     2761 cggtgccatc ggccgttgag cagggtttcg ggcatgcctt cgttacgatc atagatacgc
     2821 acgtcacgac gatcgtctcg tcgctgtttc tgtacgtgtt tggtgctgga ccaattcgcg
     2881 gctttgcggt cacgttggtt ctgggccttt tggtcaatct attctcggcg gtttatgttt
     2941 cgcgcacgat ctttatctgg ttgctgagtc gcaaaggaag gcgagtgcag tcgcttagta
     3001 tttgaaagcg gtgacaagtg aaaagtgacg agtgacgaaa aggtaactgt tctgcttgtc
     3061 acccgtaact tgtcactggt tttaggcaat gattcaaata ttcaagaatt cgaatataga
     3121 ttggctcggc aagcgtcgat actttatcgg actctcgatc ctgttgctgt tggcgggcat
     3181 gggcaccgca ttctatcgtc ataagttcca tcccaatggg accgaggcct tcaatctcgg
     3241 cgttgacttc aaaggcggca cggtcgttac ggcaaggttc aaacaaccac tttcggtcga
     3301 ggcgctgcgc acggcgattg accgcgccgg ggttgccaat tccgtgattc agcaggcgtt
     3361 ggataagccc ggcgagttcc ttatcaaagt gcctcatcag ggatcggaag agacaacctc
     3421 cgagaatcag gccggagtgg acgcggcgcg cgccaacgtt aagaaagcgt tggattcatt
     3481 tgggccggaa gccgaaccca acaagaacct cgaagacgat cctaaagcgg tgtacaagat
     3541 cgaaggcact gaagcagtcg gtcaggtcgc gagcaaacag ttgcgtaatc aggcgattgc
     3601 agtaacgatc gcggcgctcg tcggcatgct tctctttatt gctttccggt atgaatggac
     3661 gtatggcgcg tcggccgtga tcgcggtctt ccacaccgtg ttagtgaccc tgggactctt
     3721 ttcgatgttt cagtgggaga tcaacctgac ggtgatcgcg gcgttgctga cgctggtcgg
     3781 ctttgacgtt aacgacacga ttgtgatctt cgatcggatt cgcgagaatc gaaagctgta
     3841 tcggcggatg agtctctatg acgtgacgaa cctttcgatt aatcagacgc tctcgcgtac
     3901 ggtaatcacc tcgggcctcg tctttctttc cgtcgtggcg ctggtgctgc tgggcggcga
     3961 aacgctgcgg ccgttctcac tcgctttgtt aatgggtatt gtctttggca cttacgacac
     4021 gatcgcggtc gctggtccga tcatggtctg gtgggagaag cgactcgagg ccgcgaacaa
     4081 actgccggcg actgcgcgcg aagccggaat ccaaacttcg ggtcgcggtt cagcgcgcgg
     4141 ggcgagcggg cgcaacgaag ttgcaaaagc ttcacgtgcg gccagagttt gatcgggaac
     4201 ccgctggtga actttggagt ctaaacggta gcggttgttg catggcaacg tgttcagtca
     4261 agaccgcgaa aatgctcgtt cattgcacgt ttttgctctt gactttgcgg ctgattgcgg
     4321 aatagactgc acgcgttgct ggccaattga atacgctttg tgatcgtgcc ctgttggttt
     4381 acagaggctg ggatgcacgg tggtttatac gttgagatgg ccagtttatt tgtgtcttgt
     4441 gtggcggccg ggctcaacgt ggtggcgtgt tgaagagcgc cgggccctcc gttgttttct
     4501 ttcttttctg aagcgtccag cgggctcgag caacgcgttt catctgtaat tattttctag
     4561 taatcgccgc ggaatagatt tccaaacctg acccttttgg caccgaattg ggaggacaga
     4621 aggatgttcg aaaacctggt tgagtccgga tcgcattcgg cagatgtaaa gcgaaaaggc
     4681 tcgtttctca tgggcacgtt ggccgtgtac ggggttttga tagtggcggg gctcattgct
     4741 gggatcctga tggcgccggc atacatcgat cagcaaaacc ttgagctgac cgctttgatt
     4801 gctcctgtgc cggttccgca gaagcaagcg gaagcaaagc ccgaaaaggt aaacatcgac
     4861 aagaacgttg acgtgcgcaa ggagttgatt gccgcggtcg accgagctga cttggtgccg
     4921 aaaacgattt cggccaaggc tagtgatatc ccgccgatgc gcaacaatgt ggtgacgatg
     4981 ctcggcggct cgaactccaa tgcggttgca ccggttgcgc cgggcgccgg aacgggccaa
     5041 atcatctcga cgccggcgaa agtagaaacg agcgatgcgc caccgccgcc acccaagccg
     5101 acgcctcatg cgccgatttc gggaggcgtg ctcaacggcc aggcgatacg cttggttcag
     5161 ccaaattatc cagcaattgc gaagaccgcg catgcgtcgg gccaagtcag agtgcagata
     5221 ttgatcgacg agaacggcaa cgtgatctct gcgtcggccg tgtccggcca cccgctcttg
     5281 caagccgcgg cggctgcggc tgcgcgcgcc tcgaagttta cgccgacaaa actttcaggc
     5341 cagcccgtta aggttagcgg ggtgattatc tataactttt tgccgcagta gtgagccggc
     5401 gcgttggtct tgaatgcccg ggaccaactc aagttacatc cgccggtacg gaattaatgt
     5461 aatcaacctt ttggaggatt tcccgtgact attctaacaa gcattctcgg accgaaagtt
     5521 tttggtttgc ttttcgctct ctggcaagct agcccagcgg cgagtgaggc ggagacgggc
     5581 ggccaagaga tcaatttcac cgagatggtc aagcacatgg gccccgtggc gatcacggtc
     5641 gtgatcattc tgctgatcat gtcagtctat tcgattgcca ttatggtcga gcgtt
//
LOCUS       DASZZE010000247         4477 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_317741, whole genome shotgun sequence.
ACCESSION   DASZZE010000247 DASZZE010000000
VERSION     DASZZE010000247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4477)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4477)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4477
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_317741"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2610)
                     /gene="infB"
                     /locus_tag="VHD88_04840"
     CDS             complement(<1..2610)
                     /gene="infB"
                     /locus_tag="VHD88_04840"
                     /inference="COORDINATES: protein motif:HMM:TIGR00487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HVS21150.1"
                     /translation="MGALTNKVRLYDLAKDLKIDTKRLIEEVRREGVDVSVPSNSVSK
                     ELADKIREKYFPQKDTAVKRAIRVVKKAARPVVEEAPPAETQEIAAAPEPAQPEPTDV
                     AETAIPAQATPTRVIRKLSPAARAAKPIATSPATATPEQTETESELAASASEDGAAAA
                     AQSEPVQIPSRQVRVMRPTAAALSAGVRPGERAPAPPPTAPTVRERSRDRSGRARVEY
                     AGTPGETPTPQTTYIPPPDAGRRRSRRGSSRMGKRTDGKGSRFDKEFIPPPKPLSLEE
                     RVAGRLEATVPGELKPVRLVEGSTVKEFAEKLGIKPKDVVALLLQRGVFATINQALND
                     DVAAEFGQRFGYDVSFVPFEEMVAEEEFEELIAADADDVEVPRAPVVTVMGHVDHGKT
                     SLLDAIRTTNVVAGEAGGITQHIGAYSVEVQSPDNPNEKRRVVFLDTPGHEAFTLMRA
                     RGAKATDVVVLVVAADDGVMPQTIEAIEHSRAANVPIVVAINKIDKPDANPDRVRQEL
                     SQQGLNPVEWGGETEVVQVSAKKRENIEHLLETILLTSDILNLRASTTRLASGVVLEA
                     KLDRGRGSVATALVQQGTLRVGDPFIVGQIFGKVRAMFNDRGEPVAEAGPATPVEVLG
                     LQGVPQAGESFQVVADVGRAQQISGHRQAAERQRTLIKTTKRGIEALGETEVKELLVV
                     LKADVQGSVEVLKSTLQKMSTERVKVKVVRSGVGAITESDVLLASATQAGSASTAVVI
                     IGFNVRPESRAGDLAKQESVDIRLHSIIYKVEEEIKAAMIGMLEKIEKEKILGKADVR
                     EVFKVPKVGAVAGCMVIDGIMKRNARARLIRDAVVIWEGNIGSLRRFKDDASEVREGF
                     ECGIGLENFNDIKV"
     gene            complement(2764..>4477)
                     /gene="nusA"
                     /locus_tag="VHD88_04845"
     CDS             complement(2764..>4477)
                     /gene="nusA"
                     /locus_tag="VHD88_04845"
                     /inference="COORDINATES: protein motif:HMM:TIGR01953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="transcription termination factor NusA"
                     /protein_id="HVS21151.1"
                     /translation="ALCQEQGIDRELVIEAVKEAVRAAAKKQFRGGEDIQVDWSPETG
                     LELSASKVVVDAVENPSTELSIDEARELGGDEVEVGDALLLPMPMEELGRIAAQTAKQ
                     ILFQKVRDAVRTNVYDQYIDRVGELVNGFVKRFERGNMIVDLGNLEAILLRSQQSRGE
                     QWNQGERIRVVITNVSKESKGPQIEVSRTSPELLERLFEMEVPEIYDGTVVIKSCVRE
                     PGERAKIAVISNERDVDPVGACVGMKGSRVQAIIRELRGEKIDIIEWSEEPSVFAANS
                     LSPAKVNQVRITDIENRQMEVIVNEDQLSLAIGKRGQNVRLATKLVGWNIDIRSEEEL
                     KKEVTEQMGAMIASGAPVPLSVIEGVTAQQQDALAEHGVTDIDGLANTSVDDLVEFLD
                     VSLDEAETILTAARAVIAMREQSMQAATEEAGEGTTAHAVSAELDESVAGEIEPNDEM
                     TAAGYDEAVENGTPFSADANHLAQESAEPVALTEADPISVDELMLQEAGRDLRPDVIT
                     PAPDITSMGVADLEAVEHAEETEVMETAEASASQAEAQTETPLASSSNEVAATNESLE
                     DEKQ"
BASE COUNT          798 a         1374 c         1283 g         1022 t
ORIGIN      
        1 gaccttgatg tcgttgaaat tctctaaacc gatgccgcat tcgaagcctt cgcgcacttc
       61 ggaagcgtca tccttgaatc gtctcagcga cccaatgttg ccttcccaga tgacgacagc
      121 gtcgcgaatc aggcgcgcgc gcgcgttgcg cttcatgatg ccgtcgatca ccatgcaacc
      181 ggccacggcg ccgaccttcg gcaccttaaa gacttcgcgc acgtcggcct tgccgaggat
      241 cttctctttc tcgatcttct cgagcatgcc gatcatcgcc gccttaatct cttcttcgac
      301 cttgtagatg atcgagtgca ggcgaatgtc cacgctctcc tgcttagcca gatcgccagc
      361 gcgcgattca ggacggacgt tgaagccgat gatcacgacg gcggtcgagg ccgagcccgc
      421 ctgggtggcc gaagcgagca acacgtcgga ttcggtgatc gcaccgacac ccgagcgaac
      481 gacttttacc ttgacgcgct cagtggacat cttttgcaga gtcgatttca aaacttcgac
      541 tgagccctgc acgtccgcct tgaggacgac cagcagttcc ttgacttcgg tttcgccaag
      601 agcttcgatg ccgcgcttgg tcgtcttaat caaagtgcgc tggcgttcgg ctgcctgccg
      661 atgaccggaa atttgctgcg cgcgcccaac gtcggcgaca acctggaaac tttcgccggc
      721 ttgcggcact ccttgcaggc cgagtacttc gactggcgtt gcgggacccg cttcggcgac
      781 cggctcgccg cgatcattaa acatcgcgcg caccttgcca aagatttggc cgacgatgaa
      841 cggatcaccg acgcgcaaag tgccttgctg aaccagcgcc gtagctactg agccgcgtcc
      901 gcgatccagc ttcgcttcga gcacgacgcc ggaagcgaga cgagtagtgc tggctcgcaa
      961 gttcaagata tcggacgtca gcaaaatggt ttcgagcaag tgctcgatgt tctctcgttt
     1021 cttcgcggaa acctggacca cctctgtctc gccgccccac tcaaccggat tgagtccttg
     1081 ctgcgatagt tcctgcctga cgcgatcagg attcgcatcc ggcttgtcga tcttgttaat
     1141 cgcgaccacg atcggaacat tggcggcgcg cgagtgttcg atcgcttcga tcgtttgcgg
     1201 cataacgcca tcgtcggcgg ccacgaccag cacgaccacg tcggtcgctt tcgcgccgcg
     1261 cgcgcgcatc agggtgaacg cttcgtggcc cggcgtgtcg agaaacacaa cgcgtcgttt
     1321 ttcgttcgga ttgtccggac tctgaacttc aacgctgtag gccccgatgt gctgcgtgat
     1381 tccgccggct tcgccggcaa ctacgttggt tgtgcgaatc gcgtcgagca gggaagtctt
     1441 gccgtgatcg acgtggccca ttacggtgac gacgggcgcg cgcggaacct caacatcgtc
     1501 ggcatcggcg gcgatcagtt cttcaaactc ttcttcggcg accatctctt cgaacggcac
     1561 gaagctcacg tcatatccga atcgctgacc gaattcggca gcgacgtcgt cgttcaacgc
     1621 ctggttgata gtcgcgaaca cgccgcgttg aagcagcaag gcgaccacgt ctttcggttt
     1681 gatgcccagc ttttcggcga actctttaac cgtcgatcct tcgaccagac gcacgggctt
     1741 caactcgccg ggaacagtag cctccaggcg accggcgact cgttcctcga gcgagagcgg
     1801 cttaggaggt ggaatgaact ctttgtcgaa gcgactgccc ttgccgtcgg ttcgcttgcc
     1861 catgcgcgac gagccgcggc gcgatcggcg gcgcccggca tccggcggcg gaatgtaggt
     1921 ggtctgcgga gtaggcgttt cgcccggcgt gccggcgtat tcgacgcgag ctcgcccgga
     1981 tcgatcgcgc gaacgttcac gcacggttgg cgctgtcggt gggggcgccg gagcacgctc
     2041 gcccggacga acgccggcgc tgagcgctgc agcagtcggg cgcatcacgc gcacctggcg
     2101 cgaagggatt tgaacgggtt cggactgcgc tgccgcagcg gctccatctt cgctcgctga
     2161 agctgccaac tcggattcag tttctgtttg ttccggagtc gcagtcgctg gactggtagc
     2221 aatcggtttc gcagcgcggg ccgccggtga taactttcga atgacgcgag tgggcgtagc
     2281 ttgagcggga atcgcagtct ctgcgacgtc tgtcggttcg ggctgagcag gctctggcgc
     2341 agccgcgatt tcttgtgttt ccgcaggcgg cgcttcttca acgacgggcc gcgcggcttt
     2401 ctttacgacc ctgatcgcgc gcttgacggc cgtgtctttt tggggaaagt atttctcgcg
     2461 aatcttgtcg gcgagttcct tcgagaccga attcgaaggc acactgacat ccacaccttc
     2521 gcgccgcact tcttcaatga ggcgcttagt gtcgatcttt aggtctttgg cgagatcgta
     2581 aagacgaact ttgttggtaa gggctcccat gcgctccttt gctgtttcga aagtggctgt
     2641 cgctccgcca ctttccgcaa gcacgcttca ggagcgtcat gctaaagcag acgttggagg
     2701 cgagcagccc ggcgcgccgg cgcgcgctca ctgcgatgat ttggccgcat tatcggaagc
     2761 atctcattgc ttctcgtcct ctaagctctc gttcgtcgcg gccacttcgt tcgatgacga
     2821 cgcgagaggg gtttcggttt gcgcttcggc ttgcgacgca gaggcctcgg cggtttccat
     2881 tacttcagtt tcttctgcgt gttcgacggc ttcaagatca gcgacgccca tcgaggtaat
     2941 gtccggagca ggtgtgatca cgtcgggacg aagatcgcgt ccggcttcct gcaacattaa
     3001 ctcgtccaca ctgatcggat cggcttcggt cagggccacc ggttcggctg attcttgcgc
     3061 gagatgattg gcgtcggccg agaaaggcgt gccgttttcg actgcttcat catagccggc
     3121 ggccgtcatt tcgtcgttgg gttcgatttc tcccgcgaca ctttcgtcaa gttcagcaga
     3181 gacagcgtgc gctgtagtgc cttctccggc ttcctcggtc gctgcttgca tactctgctc
     3241 acgcatcgcg attacggcgc gagcggcggt gagaatcgtt tcggcttcat cgagactgac
     3301 gtcgagaaac tcgaccaagt catcgacgga tgtattcgcg agcccgtcaa tgtcggtgac
     3361 tccgtgttcg gccagcgcgt cttgttgctg tgcggtgaca ccttcgataa ctgaaagcgg
     3421 cacaggagcg ccggacgcga tcattgcgcc catctgttca gtaacttcct tcttcaattc
     3481 ttcttcgctg cgaatatcga tgttccagcc gaccagctta gttgcgagcc gaacgttctg
     3541 gccgcgcttg ccaatcgcca gactcagttg gtcctcgttg acgatcactt ccatctgtcg
     3601 attttcgatg tcggtgatgc gcacctgatt caccttcgcg ggcgaaaggg agttcgcggc
     3661 gaacaccgaa ggctcttccg accattcaat gatatcgatc ttctcgccgc gcagttcgcg
     3721 aataatcgcc tgcacgcgcg agcctttcat gccgacgcac gcgccgaccg gatcgacgtc
     3781 gcgttcgttc gagatgaccg caatcttggc gcgctcgccg ggttcgcgca cgcacgattt
     3841 gatcacaacc gttccgtcgt agatttccgg cacttccatt tcgaacaagc gttcgagcaa
     3901 ctcgggcgaa gtacgcgaaa cttcgatttg cggccctttt gactccttcg aaacgttagt
     3961 aatgacgacg cgaatgcgct cgccctggtt ccattgctcg ccgcgcgact gttgggaacg
     4021 cagcaagata gcttccaggt ttcccagatc gacgatcatg ttgccgcgtt caaaacgctt
     4081 cacaaaaccg ttgaccaatt cgccgacgcg atcgatgtac tggtcgtaaa cgttcgttcg
     4141 gaccgcgtcg cgaaccttct gaaacagaat ctgtttggcg gtttgcgccg cgatgcggcc
     4201 aagttcttcc atcggcatag gcagcaacaa cgcgtctcca acttcgactt cgtcgccgcc
     4261 aagttcacgc gcttcgtcaa tcgacaactc cgtcgaagga ttctcaaccg cgtcaacgac
     4321 gaccttcgaa gcggaaagtt cgagcccggt ttccggactc caatccactt gaatgtcctc
     4381 gccgccgcga aactgcttct tggccgcggc gcgcacggct tccttgaccg cttcgattac
     4441 gagttcgcga tcaatgcctt gttcctggca gagggct
//
LOCUS       DASZZE010000248         3020 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_7055, whole genome shotgun sequence.
ACCESSION   DASZZE010000248 DASZZE010000000
VERSION     DASZZE010000248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3020)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3020)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3020
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7055"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(42..908)
                     /locus_tag="VHD88_04850"
     CDS             complement(42..908)
                     /locus_tag="VHD88_04850"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HVS21152.1"
                     /translation="MKTSSFSFEALRLFAAFVLCVTVVQSAGLSRPSASHINAPAHET
                     SRASAFTQYDDPYSDFRNAHYSNSGLLNERDEIKLGTHLHREVTKKFNLTDAGLVRVD
                     RIGQRCAKASLRPNLVYKFHVIESREINGFSLPGGHVYVTTALIKLANENELASVLAH
                     EVGHIVARHSLKTLKQSQEYDDIAKSLGELTGVAGDMARDLGVALGRMVGEGFLAVHT
                     RDEEREADFLGVRAMPRAGFDPRGMITMFQKLARIEEENSNLLGSLFSDHPDAEERID
                     STRYEIARMKRR"
     gene            1045..2448
                     /locus_tag="VHD88_04855"
     CDS             1045..2448
                     /locus_tag="VHD88_04855"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HVS21153.1"
                     /translation="MTTLSFWGAAGTVTGSKYLIETDRARVLVDCGLFQGLRELRERN
                     WQEPPFNAASVDAVIITHAHIDHTGYLPRFVSHGFRGPVYCSRGTADLLKILLLDAAR
                     LQEEEADYRNRHKITKHLPALPLYTEQDARETLKLLQVVENDGRPNQVAKGISAEFRI
                     AGHILGSSHVLVHLDGAGKDEQSRSVLFSGDLGKYDQPIIRDPAPPPACDYLLVESTY
                     GDRLHDVEEPKDALARIIKRAAARNGAVLIPAFAVGRAQEILYLIRKLEDEKRIPALP
                     VCLDSPMAAAATKAYAGLKEEQDEEYAAALKQTPTPLSTHSMLACATKEDSKRLNDAV
                     GARVIIAASGMMNGGRVLHHALRLLPDENATVVFVGYQAAGTLGRRVADGEKNVKVFG
                     QWIPVRCQIEKIGGFSAHADWKEVIRWLEGMPSAPRRVFVTHGEPDAAQAMAGHIRDR
                     FGWQIEVPQYGERFELV"
     gene            2563..>3020
                     /locus_tag="VHD88_04860"
     CDS             2563..>3020
                     /locus_tag="VHD88_04860"
                     /inference="COORDINATES: protein motif:HMM:NF024773.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HVS21154.1"
                     /translation="MSVLVDKSTRLVVQGITGKEGTFHTKQMVEYGTNVVGGVTPGKG
                     GTTHEGIPVFNTVADAVKEAGANASVIYVPPAFAADAIMEAADAGIPVVVCITEGIPT
                     LDMVKVKEYLSDKPTRLIGPNCPGIISPGKCKIGIMPGHVHREGCVGVVSR"
BASE COUNT          645 a          846 c          864 g          665 t
ORIGIN      
        1 ctccctcacg gtcgggcttc tgacacctcc aatcgttcgg cttagcgtct cttcatcctg
       61 gcaatttcat acctcgtact atcgattcgt tcctcagcat cgggatgatc tgagaagagc
      121 gagccgagca agtttgaatt ctcctcctca atgcgcgcga gtttttggaa catcgtaatc
      181 attcctcgcg gatcgaaacc ggcacgcggc atcgcgcgca cgccgagaaa atccgcttcg
      241 cgctcttcgt cgcgagtgtg caccgcgaga aagccttcgc ctaccattct tcccagcgcg
      301 actccgagat cgcgcgccat atcgcccgcg actcccgtga gttcaccgag cgactttgca
      361 atgtcatcgt actcctgcga ctgcttgaga gttttcaaac tgtgacgcgc cacgatgtgc
      421 ccgacttcgt gagcgagcac tgacgcgagc tcgttttcgt tcgccagctt gattagcgcc
      481 gtcgtgacgt aaacgtgccc gcccggcagc gagaagccgt tgatctcgcg gctctcaatt
      541 acgtgaaact tgtaaaccag gttgggacgc agactggctt tcgcgcagcg ctggccaatg
      601 cgatcgacgc gaacgaggcc ggcgtctgtc aggttgaatt tctttgtgac ttcgcggtga
      661 aggtgcgtgc cgagtttgat ctcgtcgcgc tcgttcagca atccagagtt tgaatagtgc
      721 gcgttgcgaa agtcggaata cggatcgtcg tattgggtga acgctgacgc ccgacttgtt
      781 tcatgagcgg gtgcgttgat gtggctagct gacggccggc tgaggccggc actctgcaca
      841 acggtcacgc aaagcacgaa cgcagcaaac aatcgcaagg cttcgaaact gaaactcgat
      901 gttttcatag gctgactctt ccggcgtgtc gcgcgtaaat aataagcgac tatgcccacg
      961 cagtgaagcg caaaatcaaa cgtgaccgat caatggacat tgattgacga ttccgatatg
     1021 tttcccgcgc tacgtttatt caagatgacc acactttcat tctggggagc agcggggaca
     1081 gtcaccggct cgaagtatct gatcgagacg gatcgcgcgc gcgtgctggt tgattgcggt
     1141 ttgtttcaag gcctgcgcga attgcgcgag cgcaactggc aggaaccgcc tttcaatgcg
     1201 gcttcggttg acgctgtaat catcactcac gcgcacatcg atcacaccgg ctatctgccg
     1261 cgctttgtca gccacggttt tcgcggacca gtttattgct cgcgcggcac ggccgatttg
     1321 ctgaagatcc tcttgctgga cgcagcgcgc cttcaggaag aagaagccga ctatcgcaat
     1381 cggcacaaga tcacaaaaca cttgccggcg ctgcctctct atactgagca ggatgcgaga
     1441 gagaccttga agctgcttca agttgttgag aacgatggcc gaccgaacca agttgcgaag
     1501 ggaatcagcg cggagtttcg catcgccgga cacattcttg gttcgagtca cgtgctcgtg
     1561 catctcgacg gcgcgggaaa agatgagcaa agtcggagcg tgcttttttc cggcgacctc
     1621 ggcaagtacg atcagccgat cattcgcgat ccggcgccac caccggcgtg cgactatctt
     1681 ctggttgagt caacgtacgg cgatcgtctg catgacgtcg aggaaccgaa agacgcgctc
     1741 gcacgaataa tcaagagggc tgcggcgcgc aacggcgccg ttctgattcc tgcgttcgcg
     1801 gtcggacgcg cgcaggagat tctttatttg attcgcaagc tcgaagacga aaagcgaatc
     1861 ccggcgttgc cggtttgttt ggattctccg atggccgccg ctgcgacgaa agcttacgcc
     1921 ggcctcaaag aagaacagga cgaagaatat gccgccgcgc taaagcaaac gccgacgcct
     1981 ctaagcaccc attcgatgct cgcgtgcgcc acaaaggaag actcgaagcg tctgaacgac
     2041 gctgttggcg cgcgtgtgat cattgccgcg tcggggatga tgaatggtgg tcgcgtgctg
     2101 catcacgcgc tgcgattgtt gcctgatgaa aatgcgacgg tcgtttttgt cggctatcaa
     2161 gccgcaggca cgctcggtcg ccgcgttgcc gatggcgaaa agaatgtgaa ggtctttggc
     2221 caatggattc cggtgcgctg ccagattgaa aagattggcg gcttttccgc gcacgcggat
     2281 tggaaagaag tcattcgctg gctggaaggc atgccgtccg cgccgcgccg cgtgttcgtt
     2341 acgcacggcg agcccgatgc cgcgcaagcc atggccggtc acattcgcga tcgattcggc
     2401 tggcagattg aagttccgca atacggcgaa cgattcgaac tcgtttgaat cgtacctatt
     2461 aattcaccgc tcctctttgt gcggcactaa tccagttgct atactgcgcg ctcgttatct
     2521 tcaaactgat cgctgatcac cgaccaccga ccactgattt caatgagcgt tctcgtcgat
     2581 aaatctacgc gcctcgtggt gcagggcatc accggcaaag aaggcacgtt tcatacaaag
     2641 cagatggttg agtatggaac gaacgtcgtt ggcggtgtga cgccaggcaa aggcggaacg
     2701 actcacgaag gcattcctgt tttcaacact gttgccgatg ctgtgaaaga agccggcgcg
     2761 aacgcttcgg tgatttacgt gccgccggca ttcgccgccg atgcgatcat ggaagcggcg
     2821 gacgcgggaa ttccggttgt cgtctgcatc accgaaggaa tccccacgct cgacatggtg
     2881 aaggtcaagg aatacttgag cgacaaaccg acgcgcttga ttggaccaaa ctgtcccgga
     2941 atcatctcgc ccggcaaatg taaaattgga atcatgcccg gtcacgttca tcgtgaaggc
     3001 tgcgtcggtg tcgtctcgcg
//
LOCUS       DASZZE010000249         2804 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_232625, whole genome shotgun sequence.
ACCESSION   DASZZE010000249 DASZZE010000000
VERSION     DASZZE010000249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2804)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2804)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2804
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232625"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1388
                     /locus_tag="VHD88_04865"
     CDS             <1..1388
                     /locus_tag="VHD88_04865"
                     /inference="COORDINATES: protein motif:HMM:NF018884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GAF domain-containing SpoIIE family protein
                     phosphatase"
                     /protein_id="HVS21155.1"
                     /translation="SASVPEATIALSSADRTTSGLFEAIEGARTQSEETAAHRTSRQS
                     DLLALISKVGVALLASVTLNETLDQIVSLVFEAVPADRCMVMMRDEKSPDLKVAVARL
                     RDRAGEVGEIRISRSVIEEVVTNGKAVLTSDAQADPRFAGGTVMLQGVRSVLAVPLGV
                     GQNVFGIIYADSPLAEGRFTEDHLKVLTTLASVASIRVENARLVEEQLGRERLERELQ
                     VASEIQQRFQPATAPLVAGYELQGISFPCYEIGGDYYDFIPRADGKMVVALGDVSGKG
                     TAAALLMSSLHAAVHAQADTHDSLVKTISAVNKYLVESIPPNRFVTLFYAELDPKNGA
                     LAFLNAGHNPPLIVHASGTMEQLAAGGLPLGIMTDADFREGRTKLHPGDVLVIYSDGV
                     SEAFNPSGEEFGPTRLYETVARNLDASAAGIRDRIESALTKFCQGTPAADDITLVIVK
                     RLAEAAAAAAS"
     gene            complement(2161..>2804)
                     /locus_tag="VHD88_04870"
     CDS             complement(2161..>2804)
                     /locus_tag="VHD88_04870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21156.1"
                     /translation="TSAAFFLSIEFQGTGYLVERIYKSAYGNISGAPVPVRLNEFLPD
                     TQEIGQGVIVNQGNWQQQLENNKQAFTLEFVQRSRFTSAYSTTLTPTQFVNTMFANAG
                     VTPSSADRTTAINEFGGATTTADVAARSRALRDVAENTTLNQQEFNKAFVLMQYFGYL
                     RRNPYDPPEPTLDYQGYNFWLNKLNSFNGNYVNAEMVKAFITSSEYRQRFGTP"
BASE COUNT          585 a          764 c          843 g          612 t
ORIGIN      
        1 actcggcgtc ggttcccgaa gcgacgatcg cgctctcttc cgccgatcgc accacgtcgg
       61 ggttgttcga agcgatcgaa ggcgcgcgca cgcaatctga ggaaaccgcc gcgcaccgga
      121 cctcgcggca gagcgatctg ctggccttga ttagcaaggt gggcgtcgcg ctgctggctt
      181 cggtgacctt gaatgaaact ctcgatcaaa tcgtctcgct ggttttcgaa gcagtgccgg
      241 cggatcggtg catggtgatg atgcgcgacg agaagagccc ggacctgaaa gtggccgtcg
      301 cgcgtttgcg cgatcgcgcc ggcgaggtcg gcgagattcg catcagccgc tcagtgatcg
      361 aagaagtcgt gacgaacggc aaggccgtgc tgacttccga cgcgcaggcc gatccgcgct
      421 ttgccggcgg caccgtgatg ctgcaaggcg tgcgttcggt gctcgcggtg ccgctcggcg
      481 tggggcaaaa cgtttttggg atcatctacg ccgactcgcc tttggccgaa ggccgcttca
      541 ccgaagatca cttgaaagtt ttgacgacgc tcgcttcggt cgcctccatt cgcgttgaga
      601 atgcgcgcct ggtcgaagag cagttggggc gcgagcgtct cgaacgcgag ctgcaagttg
      661 ccagcgagat tcaacagcgg tttcagccgg ccacggcgcc gctggttgcc ggttatgaat
      721 tgcagggcat tagttttccc tgttacgaaa tcggcggcga ttattacgat tttattccgc
      781 gcgccgacgg caagatggtc gtggcgctcg gcgatgtttc cggcaaaggc actgccgccg
      841 cgctgctgat gtcgtcgctc cacgctgcgg tgcacgcgca ggccgacacg cacgactcgc
      901 tggtaaagac gatcagcgca gtcaataaat atctggttga aagcattcct cccaatcgat
      961 tcgtgacgct cttctatgct gagcttgatc cgaagaacgg agcactggcg tttctcaacg
     1021 caggtcacaa tccgcccctg atcgttcacg ccagtggcac gatggaacaa ctcgcggccg
     1081 gcggtctgcc gcttggcatc atgacggacg cggattttcg ggaagggcgc acgaagttgc
     1141 atcccggtga cgtgttggtg atttattccg acggagtttc ggaagccttt aatccgagcg
     1201 gcgaagaatt tggcccgacg cggctttacg aaacggtggc gcgcaatctc gacgcttcgg
     1261 ctgccggcat acgcgatcgc atcgaatccg cgctcacaaa attctgccag ggcacgcccg
     1321 ccgccgacga catcacgctg gtgatcgtca agcgcctggc ggaagccgcc gccgctgccg
     1381 cgagttaagc tgggaagggc gttactcact catgtagcct gcggagcagg cgttagcata
     1441 aagcctgggg cgtgagcccc aggtacgaat tgggccggaa cctcaaagcc cgtgaaacgg
     1501 gcgacagcat gtcactaaag ataccgctcg tcgtattcaa ttccgttcgg tttcaagaac
     1561 tgaataaact cgtcgcgaaa agagaccttc tcgtgatgct ctttctgccg aacaatatag
     1621 cggcgtactt cctcgatgag ggcctcttgc ttaaggcgtc accagcaaga acgaggctgc
     1681 cagcagaaca gtgcttgaaa agagcaaaaa agagaccggt gaagtaaacc aacgggtaca
     1741 tataattgat ttcgggagat tcattgaggt ggacaagaga ctacgacgta agcaaggttg
     1801 ggacgagaag aactgctccc aaatttaatt cggaactctc acaaagacgg ctttcggcta
     1861 gtggccgcga ggcatcccga cgccatctgc attgctaagg cgcttagtat ttagagcgct
     1921 cggcgcctta gcaagggttc atttgagtag attgtgagct gaggcacagg gatcgtgaaa
     1981 ggattacggg ccagagcgct cgcggtgcga ttaatcgctt cagggatgcg ggcccttttc
     2041 agtcattgcc tgtgtcggtg cctgctcgcg gagatttgtg aatcgcccgc aagcaatgtg
     2101 ccgcgttcgg tgaacgtgga tcgccccgga ctgacgttcc gccgatccat cgaaatttac
     2161 tcacggcgtg ccaaagcgtt gtcgatattc ggaggaagtg ataaaggctt tgaccatttc
     2221 agcgttgacg tagttgccgt tgaagctgtt caacttgttc agccagaagt tgtatccttg
     2281 atagtccagc gtcggttccg gtgggtcgta gggattcctt cttaaatatc caaagtattg
     2341 catcaacaca aatgccttgt tgaactcctg ctgattcagc gttgtgttct ccgccacgtc
     2401 gcgcagtgca cgcgaacgcg cggcgacatc cgcagtcgtc gtcgcgccgc caaactcgtt
     2461 gatggctgtg gtgcgatctg ctgatgacgg cgtcacgccc gcattcgcga acattgtgtt
     2521 cacgaattga gttggcgtca gcgtggtgga gtacgccgaa gtgaagcgtg agcgctgcac
     2581 gaactccagc gtgaaggctt gcttgttgtt ctccaactgc tgttgccaat tgccttggtt
     2641 gacgatcaca ccttggccaa tctcctgagt gtcaggcaga aattcgttga gtctgaccgg
     2701 caccggcgcg cctgagatgt tgccgtaagc cgatttgtaa attcgttcga ccagataacc
     2761 cgtcccctgg aattcaattg agagaaagaa agccgccgaa gtgt
//
LOCUS       DASZZE010000250         4137 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_188827, whole genome shotgun sequence.
ACCESSION   DASZZE010000250 DASZZE010000000
VERSION     DASZZE010000250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4137)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4137)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4137
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_188827"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..229
                     /locus_tag="VHD88_04875"
     CDS             <1..229
                     /locus_tag="VHD88_04875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21157.1"
                     /translation="GARRVTAIAQRGLSGFAISSEEIVKPSVRVLTRVEGDQVFLELR
                     PRASLAPGEYAIIGDDLTRIATFRVAEAPQP"
     gene            252..929
                     /locus_tag="VHD88_04880"
     CDS             252..929
                     /locus_tag="VHD88_04880"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HVS21158.1"
                     /translation="MDSSNHSSKAPSTGNRGFWTPARIVLTLAVVGLLAALGLSSCNS
                     SEVPSNATANRVATASPPKNTLPPAFVPLPQQIRDLKLQTLEGESLKLSDYADKVVVV
                     NIWATWCGPCRTEMPDLVKLSHEYKERGLVVLGLATTYNEHNDPTHVKDFVRSQNVDY
                     KIIWDDGTLAAPLVRMVNGPNAIPQSFVISRDGRIVKHFPGFSPYSTPTLMRQAVEDA
                     LNDKGKA"
     gene            1016..1504
                     /gene="greA"
                     /locus_tag="VHD88_04885"
     CDS             1016..1504
                     /gene="greA"
                     /locus_tag="VHD88_04885"
                     /inference="COORDINATES: protein motif:HMM:NF013440.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0070063 - RNA polymerase binding [Evidence
                     IEA];
                     GO_process: GO:0006354 - DNA-templated transcription
                     elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HVS21159.1"
                     /translation="MPSDATTEVKQRLQTELDGLETELRIHLPKEIKLAREFGDLREN
                     SEYQTALQRQTMVKARIRELRQRISEVSSIDLSRIPRDKAAYGSTLVLYDSERDEEVT
                     YRLVTPEETDPAAGLISTVSPVGRSLMGKEEGDEVVVTTPAGSRRFEIKRLKTLHDEA
                     KS"
     gene            complement(1779..2501)
                     /locus_tag="VHD88_04890"
     CDS             complement(1779..2501)
                     /locus_tag="VHD88_04890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21160.1"
                     /translation="MPAAIFRLPFAALLLLSAAFLSFPQDPTKRNDRQPQPSPTPQRR
                     EENKKPPDPTAYSYEFTQPKFLISRILIEHDALGRGKITFVRQSETPIVEPIELSTGA
                     LGRIFGLWNDLHFLDSNENYQTTKDFSYLGVYRLHMDDGQRRRTAEFNWSDNKPAWAL
                     VKEYQRVSDQAVFVFDMTVARENQPLNAPSLMNQLESMYTRGGLSDPHQLVPLLTELR
                     TDERIPLIARNHADRLLKKIEK"
     gene            complement(2567..>4137)
                     /locus_tag="VHD88_04895"
     CDS             complement(2567..>4137)
                     /locus_tag="VHD88_04895"
                     /inference="COORDINATES: protein motif:HMM:NF014516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21161.1"
                     /translation="AGNGRALEEGAGLLTFKRELRELELRAGDLAAELAVAEMTVKDA
                     RARLTELEESVVLLNASIAREERDSMAREHTAGTLQQDIERAQRHMRVVADDAERLHQ
                     ERRELEERRAKTVAEAESANALRRATQERIEQSANLLAGIRHEGEFESELLNKQRSEA
                     AAANERRRSTTSDLRRLEIELEDVTSRLARHNLEMTEAGTRIEALGNSIAEIDRLAAT
                     VDDEKAREENQIAAATMRLTEARERADALSAELAELNRNAAASRDARAAVEVQRAEAH
                     ARVNFVRETCANELNQSLEEIARELTPDAEFDLETGRARAEELRDRLENFGAVNMMAL
                     EELSENDERLTFLTTQREDITQGIASTEEALREIKRRSRERFRDAFEKINHNFSELFK
                     ELFGGGRGEMSLIDTDDELESGIDIIAQPPGKRLQNILLLSGGEKAMAALSLVLGIFH
                     YRPSPFCLLDEVDAPLDEANIGRFTDKVVAMAADTQFIVITHNKRTMETARALYGVTM
                     EEVGVSKLVSVRFE"
BASE COUNT          837 a         1156 c         1225 g          919 t
ORIGIN      
        1 cggcgcgcgc agagtaacgg ccatagccca gcgcggattg agtgggtttg cgatctcttc
       61 agaagagatc gtcaagcctt cggttcgcgt gctgacgcgc gtcgaaggcg atcaggtttt
      121 tctggagctg cgcccgcgag cttcgcttgc gccgggtgag tatgcgatta ttggtgatga
      181 cctgacgcgc atcgcgacgt ttcgcgtcgc ggaagcgccg cagccatgat tctcaacaga
      241 acggaatttc gatggattca tccaaccatt cttctaaagc accaagcacc gggaacagag
      301 gcttctggac gcctgcgcga attgtgctca cgctcgcggt cgtcggattg ctcgcagcgt
      361 tgggtttgtc gagctgcaac tcaagcgaag tgcccagcaa cgcgacggca aatcgagtag
      421 caaccgcgtc tccgccgaag aataccttgc ctccggcttt cgttccgttg ccgcagcaaa
      481 ttcgcgactt gaaattgcag actctcgaag gcgaatcctt gaagctttct gattacgcgg
      541 acaaagtagt cgtggttaat atctgggcga cgtggtgcgg accatgccgg accgagatgc
      601 cggatctggt caagctaagc cacgaataca aggagcgcgg cctggtcgtg ctcgggctgg
      661 caaccacata caacgagcac aacgatccca cgcacgtgaa agatttcgtg cgttcacaaa
      721 acgtggatta caaaatcatc tgggatgacg gcacgttggc ggcgccgctg gttcggatgg
      781 ttaatggccc gaacgctatt ccgcagagct ttgtcatctc gcgtgacgga cgcatcgtga
      841 aacactttcc gggttttagt ccctactcaa cgcccacgtt gatgcggcag gcggttgagg
      901 acgcgcttaa tgacaaaggc aaagcctaga atcagtaagc agtaagcatt gagcagtcga
      961 tagcgagtgg gtagttttct aagacttact gagaaagcga tcgaggaagg taccgttgcc
     1021 aagcgacgca accactgaag tcaaacagcg attgcaaacg gaactcgatg ggttggaaac
     1081 cgagctgcgc attcatctgc cgaaagagat taagctcgcg cgcgagtttg gcgacctgcg
     1141 cgaaaactcc gaatatcaaa ccgcgctgca acgtcagacg atggtaaagg cgcgcatacg
     1201 cgagctgcgc cagcgcatta gcgaagtttc ttcaatcgat ctttccagga ttccgcgcga
     1261 caaagcggct tacggatcga ctctcgtgct ttacgattcg gaacgggatg aagaagtgac
     1321 gtatcggctc gtaacgcctg aagaaaccga tcccgcggcg ggtttgatct cgaccgtctc
     1381 gccggtcggc cgcagcttga tgggcaaaga agaaggcgac gaagtcgtgg ttacgacccc
     1441 ggccggttcg cgccgatttg aaatcaagcg gctgaagacg cttcacgacg aagcgaagag
     1501 ttaaccggag atcgattgat acccgcgagt ttgaaatcgt tcctggtggc gggcgagtat
     1561 cgcggacgat ttccaaagtg aggaaggata aaggcgcggc tctgccgcct gatgtgtggt
     1621 gaggctctgc ctcaccgtta agattgccca acgatttagg ggctgcgccc gagctttggg
     1681 gcgcagcccc ttttcctttt gtgcttgact gccggaaggt cagagacctt ccgcacatca
     1741 gacggcacag ccgaggagca cactttcata ctccccgact acttctcaat cttcttcaac
     1801 aacctatcgg catgattgcg ggcgatgagc ggaatgcgct cgtcggtgcg cagctcagtc
     1861 agcagcggca cgagttggtg cgggtctgac aaaccgccgc gcgtgtacat cgattcgagc
     1921 tggttcatca gcgatggcgc attcagcggc tggttctctc tggcgacggt catatcaaaa
     1981 acaaaaacgg cctgatccga aacgcgctgg tattccttga ccagcgccca cgccggtttg
     2041 ttgtcgctcc aattgaactc cgcggtgcgc cgtcgctggc cgtcgtccat gtgcaggcga
     2101 tagaccccca agtaagaaaa atcctttgtg gtctggtagt tttcgtttga atcgagaaag
     2161 tgcaaatcat tccacaaacc aaaaatgcgt cccagcgcgc cggtcgatag ctcgatcggt
     2221 tcgacgatcg gagtttcgct ctgacgcacg aacgtaatct tgccgcggcc gagcgcgtcg
     2281 tgctcgatca agatacggct gatgaggaat ttcggctgcg taaactcgta gctgtacgcc
     2341 gttggatcgg gcggcttttt gttttcctct cggcgctgcg gggtcgggct cggctgtggc
     2401 tgacgatcgt tgcgtttggt tgggtcctgg ggaaaagaca ggaacgcggc gctcaagagt
     2461 aacagcgcgg caaatggcaa tctgaaaatc gcggctggca tatgaatttc ggtaaacgta
     2521 tttctagatg atgacgggaa agaacgcaag ttgagaactt gctaagttat tcgaacctga
     2581 ctgagacgag ttttgagacg ccgacttctt ccatggtcac gccgtaaagc gcgcgcgcgg
     2641 tttccatcgt gcgtttgttg tgcgtgatga cgatgaattg cgtgtccgcg gccatggcga
     2701 cgactttgtc ggtgaagcga ccgatgttcg cttcgtccag cggcgcgtca acttcgtcaa
     2761 gcaaacagaa gggagagggt cgatagtgga atattccgag gaccagcgac agcgcggcca
     2821 tcgccttttc gccgccggaa agcagcaaaa tgttttgcag acgcttgccc ggcggttgcg
     2881 cgatgatgtc gatgccggat tcgagttcgt cgtccgtatc gatcaagctc atctctccgc
     2941 ggccgccgcc gaatagctct ttgaacagct cgctgaaatt atgattgatc ttttcgaacg
     3001 cgtcgcggaa ccgctcgcgc gagcggcgtt tgatttcgcg cagggcttct tcggtggaag
     3061 cgatcccctg cgtgatgtct tcgcgttgcg tggtcaggaa agtcaggcgt tcgtcgttct
     3121 cagacaattc ttccagtgcc atcatgttga cggcgccaaa gttttccaga cgatcgcgca
     3181 actcttcagc ccgggcgcgc ccggtttcga gatcgaattc ggcgtccggc gtaagctcac
     3241 gtgcgatttc ttccaggctt tgattcagtt cgttcgcgca ggtctcgcgc acaaagttta
     3301 cccgcgcgtg cgcttcggcg cgctgcacct cgacggcggc acgggcgtcg cgcgaagccg
     3361 cggcattgcg atttagttcc gctagttcgg cggaaagcgc gtctgcgcgt tcgcgggctt
     3421 ccgtcaatcg catcgtcgcc gcagcaatct gattttcttc ccgcgctttt tcgtcatcga
     3481 cggtggcggc gagccgatcg atttccgcga ttgaattgcc taacgcttca attcgcgttc
     3541 cggcttccgt catttccaga ttgtgccgcg cgagccgcga ggtcacgtcc tcaagttcaa
     3601 tctcgaggcg acgcaggtct gacgtcgtcg aacgccggcg ttcatttgca gccgcggctt
     3661 ccgaacgctg cttgttaagc aactcgcttt caaactcgcc ttcgtgccgg atgccggcca
     3721 gaagattggc ggactgttcg attctttcct gtgttgcgcg gcgcaaagcg ttggcgcttt
     3781 cggcttcggc cacggtcttg gcgcggcgtt cttccaactc acgacgctcc tgatgcaaac
     3841 gttcggcgtc gtccgcaacg acgcgcatgt gccgttgggc gcgctcgatg tcctgctgca
     3901 aagttccggc cgtatgttcg cgggccatcg aatcgcgctc ttcgcgggca atcgacgcgt
     3961 tcagcaagac gactgactcc tcgagttcgg tgagacgcgc gcgcgcatcc ttgacggtca
     4021 tctcggcgac ggcgagttcg gcggccagat caccggcgcg caattccaac tcgcgcagtt
     4081 cgcgcttgaa cgtcaacaaa cccgcgcctt cttccagcgc gcgaccgttg ccggcgt
//
LOCUS       DASZZE010000251         1834 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_24812, whole genome shotgun sequence.
ACCESSION   DASZZE010000251 DASZZE010000000
VERSION     DASZZE010000251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1834)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1834)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1834
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24812"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1834)
                     /locus_tag="VHD88_04900"
     CDS             complement(<1..>1834)
                     /locus_tag="VHD88_04900"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HVS21162.1"
                     /translation="ATGESHQLTAGPRDSSPRWSPDGKSLVFVRVTEKDGRPDTPQLS
                     MLSMAGGDSFQFTTIARGAGGPQWSPDGKTIAFVSGANPEDLAKAAPKPSPSPTEAKK
                     PDDSHESDVRVITRAVYRSNGAGYLDTKHPQHIWIINAPRSGDDKVTPKQLTSGRYDE
                     ANVTWAKDSSQIYFDSDRKDEPYYELPSTDLYSISVAGGSPVKLTSFDMGTGAFSVSP
                     NGKQFAFYASVNKPVQSYTEPDLWVMDIAPNAQPRNLTRDFDYDLGSGVGGDNTAPRG
                     GGGAPPVWAADGRSIIAVFGKEGKANLGAFDATTGKETDLTSGNQAVVSFRATPDASK
                     FAMIISTPTRVGDVFWLESAGVQPKQLTHLNDELFSKLNLTEPEEIWYTSFDGKRIHA
                     WIQKPPDFDPNKKYPLILNIHGGPHAAYGFVFDHEFQWMAAKGYVVLYPNPRGSTTYG
                     QAFGNIIQYNYPGDDYKDLMAGVDEVIKRGYIDEKKLGVTGGSGGGLLTNWTIGHTTR
                     FAAAVSQRDIASWSDWWYSSDFTLFQPSWFKAPPFEDPKDYEARSPITYIKNVTTPLM
                     LILGEADYRTPTGAGGEEMFRALKYRKIPTVMVRFPNETHELSRS"
BASE COUNT          359 a          518 c          541 g          416 t
ORIGIN      
        1 gagcgtgaaa gctcgtgcgt ctcgttcggg aagcgcacca tgactgtcgg aatcttgcga
       61 tacttgagcg cgcgaaacat ttcttcgcca cccgcgccgg taggcgtgcg gtaatcagcc
      121 tcgcccagaa tcaacatcaa aggcgtcgtc acattcttga tgtaagtgat cggagagcgc
      181 gcttcatagt ctttcggatc ttcgaatggc ggcgccttga accagctcgg ctgaaacaaa
      241 gtgaagtccg acgagtacca ccaatcagac cagcttgcga tgtcgcgttg tgagacggca
      301 gcagcgaaac gcgtcgtgtg cccaatcgtc caattagtga gcagcccgcc gccactaccg
      361 cccgtcacgc ccagcttctt ttcatcgatg tagccgcgtt tgatgacttc gtccacaccg
      421 gccatcaagt ctttgtagtc gtcgccggga tagttgtatt gaatgatgtt gccaaaggcc
      481 tgaccatagg tcgtgctgcc gcgcgggttc ggatagagca cgacgtaacc tttcgcagcc
      541 atccactgaa actcgtgatc gaaaacaaac ccgtacgccg cgtgcgggcc gccgtggatg
      601 ttcaggatga gcggatattt cttattcgga tcaaagtcag gcggtttctg tatccaggcg
      661 tggatgcgtt tgccgtcgaa actcgtgtac cagatttctt ccggctcggt caggttgagt
      721 tttgaaaaca gctcatcgtt gagatgtgtt agctgcttcg gctgaacgcc tgcgctttca
      781 agccagaaga catcgccaac tcgcgtcggc gtggagatga tcatagcgaa cttcgacgcg
      841 tcaggcgtgg cacgaaaact aacgaccgct tgattgccac tggtcaggtc tgtctctttg
      901 ccggtggtcg cgtcaaacgc gccgagattt gctttacctt ctttgccaaa cacggcgatg
      961 atactgcgac catcggctgc ccaaacaggc ggagcgcccc cgccaccacg cggcgcagtg
     1021 ttgtcaccgc cgactccgga gccgagatcg taatcaaaat cgcgcgtgag atttcgcggt
     1081 tgagcgttgg gcgcgatatc catcacccac agatcgggct cggtgtatga ctggactggc
     1141 ttattcaccg aagcgtaaaa cgcgaactgc ttgccgttgg gactgacgga aaaagcgcct
     1201 gtgcccatgt cgaatgaagt gagttttacc ggcgaacctc cggcgacgga gattgaatag
     1261 agatccgtcg atggcagttc gtaataaggc tcgtccttgc ggtcggagtc gaagtagatt
     1321 tgcgaactgt ctttggccca ggtgacattc gcttcgtcgt aacgtccgct ggtcagttgc
     1381 ttcggagtca ccttgtcgtc gccgctgcga ggcgcgttga tgatccagat gtgctgcggg
     1441 tgctttgtgt cgagatagcc ggcgccgttc gagcgatata cggcgcgcgt gatcactcgc
     1501 acgtcgcttt cgtggctatc gtcgggcttc ttcgcttcag tcggactcgg ggacggtttg
     1561 ggtgcggcct tcgcgaggtc ttcgggattc gctccgctca caaatgcgat cgtcttccca
     1621 tcgggcgacc actgcggccc gcccgctccg cgcgcgatag tcgtaaactg gaacgagtcg
     1681 ccgcccgcca ttgacagcat ggagagttgc ggcgtgtcgg gacgcccatc tttttccgtg
     1741 acgcgcacaa agacgagaga ctttccatca ggcgaccagc gcggcgaaga atctcttggg
     1801 ccggcggtca gttgatgcga ctcgccggtt gccg
//
LOCUS       DASZZE010000252         2914 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_204504, whole genome shotgun sequence.
ACCESSION   DASZZE010000252 DASZZE010000000
VERSION     DASZZE010000252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2914)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2914)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2914
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_204504"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..426
                     /locus_tag="VHD88_04905"
     CDS             <1..426
                     /locus_tag="VHD88_04905"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HVS21163.1"
                     /translation="DVDRFMIEKFVTTCSDGSTGHPRKYGTFTRKLREYVYNQKLISL
                     PFAVRNSSALTAETFRIPERGLIEPGYFADVIVFDEKTVADRATYEQPELLSVGMKFV
                     IVNGKIAVENGAYTGAHAGRALRKPVQNRERSRAGFYRH"
     gene            477..1505
                     /locus_tag="VHD88_04910"
     CDS             477..1505
                     /locus_tag="VHD88_04910"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HVS21164.1"
                     /translation="MKAVIFNQHGGPDVLQLTDVSDPSIKANEVLIEVRGCALNHLDV
                     WVRGGLPGIKIPLPHILGNDVAGVVREVGELVTRVKTGDEVMLQPGVSCGHCAECLAG
                     RDNMCDEYDIIGYRRDGGYAELLTVPGVNVIPKPQNLSWPEAAALPLVTLTAWHMLVT
                     RARVQPGEDVLIHAAGSGVGSLGIQIAKLHGARVLATASSGEKLAKARELGADDTINY
                     TRDDWPKEVKKLTNGRGVDVVFEHTGEATWPGSIVSLKKGGRLVTCGATSGFDARTDL
                     RQVFYRHLTILGSMMGSKGELLAAMRFIETGKIRAVVDRTVPLAEARKAHELMEDRAQ
                     FGKLVLIP"
     gene            complement(1663..2397)
                     /locus_tag="VHD88_04915"
     CDS             complement(1663..2397)
                     /locus_tag="VHD88_04915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21165.1"
                     /translation="MEPKRSKYDTNPLDEKVAGRAEQSWGSDRPGAPTEEVAGGPTRD
                     VGRTANEAARVHPEREAATRRIDEKSVTSYPSVFIPPTNQRSATYQPPRVSPQDIYLP
                     PPVPPPNVYQPPPLPVTQRPPSHNIAGLGIPERWANLLPYFPAHIGAVAAVIELLLVP
                     RTETRARFHAAQGLALQIAILILTGVFGFVTLISGSSLGSGLFRGASAIFLIVSMVRA
                     WKGKPHHIAPLDEATKWLDDKIKPRK"
     gene            complement(2432..>2914)
                     /locus_tag="VHD88_04920"
     CDS             complement(2432..>2914)
                     /locus_tag="VHD88_04920"
                     /inference="COORDINATES: protein motif:HMM:NF025819.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M67 family metallopeptidase"
                     /protein_id="HVS21166.1"
                     /translation="KAEPFRTSGGKATKHSFGIVMIALKQAHTNEIVGHAREENPREC
                     CGLIGGNGDRTETVYRMRNIAADPLVTYEAAPEDLFAAQRAMRERGEQLMAIYHSHPR
                     ANDPTPSPTDVRLAYYPSAVYFIVGLGNEEPCLRAFRISDREGRWEPAEYEVRSHSDE
                     "
BASE COUNT          608 a          783 c          888 g          635 t
ORIGIN      
        1 gatgtcgatc gcttcatgat agagaagttt gtgaccactt gctcggacgg ttcaaccgga
       61 cacccacgca agtacggcac tttcacgcgc aaactgcgcg aatatgttta caaccagaag
      121 ctcatcagct tgccgtttgc cgtgcgcaac tccagcgcac tcaccgccga aacatttcgc
      181 atccctgaac gtggtctgat tgaaccaggc tactttgccg acgtgatcgt ctttgacgaa
      241 aagaccgtcg ccgatcgagc cacctatgaa cagccggagc tgctttcggt tggaatgaag
      301 ttcgtgatcg ttaacggcaa gatcgcggtt gagaatggcg cgtacacagg cgcgcacgcc
      361 ggccgcgcgc tgcgcaagcc ggtacagaac cgcgagcggt cgcgagcggg tttctatcgc
      421 cactaaaagg cacaaaaacc acaagaggag ttcgtgatga aatggctaga taaacgatga
      481 aagctgtcat cttcaatcag cacggtggac ccgacgttct tcaactcaca gatgtctctg
      541 atccttccat caaagccaat gaagttttga tcgaagtgcg tggctgcgcg ctgaatcatc
      601 tcgacgtttg ggtgcgcggc ggcttgccgg ggatcaagat tcctctgccg catattctcg
      661 gcaacgatgt tgccggagtg gtacgcgaag ttggcgagtt ggtcacccgg gtcaagaccg
      721 gcgacgaagt gatgttacag cccggtgtct cttgtggtca ttgcgccgaa tgtctcgccg
      781 gtcgcgacaa tatgtgtgat gaatacgaca tcatcggtta tcgccgcgat ggcggctatg
      841 cggaacttct gaccgtccct ggcgtgaatg taattccgaa gccgcagaat ttgagttggc
      901 ccgaagctgc cgcgcttccg ctggtgacgc tgacggcgtg gcacatgctg gtaacgcgcg
      961 cgcgcgtgca acccggcgag gatgtcttga ttcatgcagc cggaagtggt gtcggctcac
     1021 tcggaattca gatcgcaaag ttgcacggcg cgcgggtgct tgcgacagcg agttcaggcg
     1081 agaagctcgc gaaagcgcgc gaactaggcg ctgacgatac gatcaattac acgcgtgacg
     1141 actggccaaa ggaagtcaag aagctaacga acggccgcgg cgtcgatgtc gtcttcgaac
     1201 acaccggcga agctacgtgg ccgggttcga tcgtttcact caagaagggc gggaggttgg
     1261 tgacctgcgg ggcgaccagc ggctttgacg cgcgcacgga tctgcgacaa gttttctatc
     1321 gtcatttgac gattctcgga tcgatgatgg gatcgaaagg tgaactgctt gctgcaatga
     1381 gattcatcga gaccggcaag atccgcgctg tcgtggatcg cactgtcccg cttgccgaag
     1441 cgcgcaaagc gcacgagttg atggaagacc gcgcgcagtt tgggaaattg gtgctaattc
     1501 cgtgacgaca tggtgctcat ccttttgtga cgatgtgttc cggcctgcca ctagcgtcgg
     1561 tcgagagcca cttgaggaca tgatagtcgc tgtctgtggt attcaatact gtgtgtaatc
     1621 gatcgaattg ccaaactctt ctggatcgaa gttcatcact agtcacttcc gcggtttgat
     1681 cttatcgtcg agccatttcg tcgcctcgtc cagcggcgcg atgtgatgcg gttttccctt
     1741 ccaggcgcga accattgaga cgatcagaaa gatcgcggac gcgccgcgaa agagtcccga
     1801 cccgagtgag ctgcccgata tcagagttac aaaaccgaat acgccggtga gaatcaatat
     1861 cgcgatttgc aaagccaaac cctgcgccgc atgaaagcgc gcgcgtgttt cagtgcgcgg
     1921 cacgaggaga agttcgatga ctgcggccac ggcgccgatg tgagcgggaa agtacggcaa
     1981 caggttcgcc cacctttccg gaatgccgag accggcgata ttgtgtgacg gcggtcgctg
     2041 agtaaccggc agcggaggag gctggtacac attaggtggc gggaccggcg gcggcagata
     2101 aatgtcttgc ggagaaacgc gcggcggttg gtatgtcgca gatcgttgat tggtcggcgg
     2161 aatgaatacc gacggataag acgtgacgga cttttcgtca atgcgtcgcg tcgccgcttc
     2221 gcgttcggga tgaacacgcg ctgcttcgtt cgccgtgcgt ccgacgtcgc gagtgggccc
     2281 gccggcgact tcttcggtcg gtgcgccggg tcgatcggaa ccccaggact gctccgcgcg
     2341 gccagcgact ttctcgtcga gcggattagt gtcgtacttg ctgcgtttcg gctccatgag
     2401 aagatgctta cgagagcctc gctaatttgg ttcactcatc agaatggctt ctcacttcgt
     2461 actcggctgg ttcccatcgt ccttcgcgat ctgagatgcg aaaggcgcgc aggcaaggct
     2521 cttcgttgcc gagtccaaca ataaagtaaa ccgctgatgg gtagtaggca agccggacat
     2581 ccgtcggcga cggcgttgga tcgttggcgc gcggatgcga gtgataaatc gccatcagtt
     2641 gctcgccgcg ctcgcgcatc gcgcgttgcg cagcaaatag atcttcgggc gcggcttcgt
     2701 aagtaaccag cggatcggcg gcgatgtttc gcatgcgata gactgtctcc gttcgatcgc
     2761 cgttgccgcc gatcaggcca cagcattcgc gaggattctc ttcgcgtgca tggccgacga
     2821 tttcattcgt atgggcttgc ttgagggcaa tcatcacgat tccaaaagag tgctttgtgg
     2881 ctttgccacc tgatgtgcgg aaaggctctg cctt
//
LOCUS       DASZZE010000253         1781 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_232707, whole genome shotgun sequence.
ACCESSION   DASZZE010000253 DASZZE010000000
VERSION     DASZZE010000253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1781)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1781)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1781
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232707"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            171..>1781
                     /gene="bshC"
                     /locus_tag="VHD88_04925"
     CDS             171..>1781
                     /gene="bshC"
                     /locus_tag="VHD88_04925"
                     /inference="COORDINATES: protein motif:HMM:NF021586.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0071793 - bacillithiol biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bacillithiol biosynthesis cysteine-adding enzyme
                     BshC"
                     /protein_id="HVS21167.1"
                     /translation="MSTVETACHSTPQEAGLRVEKLSFDQIPQQSRLFLDYLRDPVAL
                     RRFYPEAVRFHYELPARSDRVLANHKTDRGVLSEALERMNRAWDAGEKTLANIRLLRE
                     PDCLAVVSGQQAGLFAGPLYTIYKALSAVKLAECMMQRGVKAVPVFWIATEDHDFAEV
                     ATTEFIDRDCALNRVSVPLETHAEGLPVGRVLLNESINDTVQSLLAALPQNEFSEDLE
                     KLLHDAYQPKRNYGDSFARVMTALMSKHGLILLDPLDSQLKNLAAPLYAEAARRAHEI
                     ATAIASRSHELEQAGYHAQVAPSENSFPLFLHDESGARHALTRTKNGKYQTKAEGQKP
                     DREGGRDAAAEYSRDELADWALREPERFSPNVTLRAVVQDFLLPTVAYYGGAAEIAYF
                     AQTSEVYRLLGRPVTPILHRASMTMVEKHTWRSLERYNIGLTDFFAGFDHVVARVVEE
                     YLSKETSAAFDHTTRTFNSELDALQEQLRRIDPTLAEALEKGRRKINYQIDGLRTRFN
                     RAQVGRDEAVHRQIERAFDLLYPEKTLQE"
BASE COUNT          396 a          520 c          491 g          374 t
ORIGIN      
        1 agcgaccgaa cgaatctgct tgcgcggaga ttggccagtt gctagacgat gccactcgcg
       61 ctctcgatca aacgattcct ggcgaaacca ctgtggcttc acaggcacgt tcctcgctgg
      121 cactgaaaac aggcgacgcg tagaatgatc gcgcaggagc aaccccaaaa ttgagcaccg
      181 tcgaaactgc ctgtcatagc acgccccagg aagccggact gcgcgtcgag aagctttcgt
      241 tcgatcaaat tccgcagcag tcgcggctat ttcttgacta tctgcgcgat cccgtggcgc
      301 tgcgccgttt ctatcccgaa gcggttcgct ttcattacga acttcccgcg cgttccgatc
      361 gagttcttgc taatcacaaa accgatcgcg gtgtgctctc tgaagcgctc gaacgaatga
      421 atcgcgcgtg ggacgccggt gaaaagacgc tcgcgaacat tcgcttgttg cgagaacccg
      481 attgcctcgc cgtcgtgtcg ggtcagcaag ccgggctctt tgccgggccg ctttacacga
      541 tttacaaagc tctgtctgcg gtaaaacttg ccgagtgcat gatgcagcgc ggcgttaaag
      601 ccgttcccgt tttctggatc gccaccgaag atcacgattt tgcagaagtt gcgactaccg
      661 aattcatcga tcgtgattgc gcgctcaatc gcgtcagcgt tccgcttgaa acgcatgcgg
      721 aaggtttacc agttggccgc gtcctgctca atgaatcgat caacgacaca gttcagagtc
      781 tgttagcagc gctgccgcag aatgaattca gcgaggatct ggaaaagctt ttgcacgatg
      841 cctatcagcc gaaacgaaac tacggcgact cattcgcacg cgtgatgacc gctttgatga
      901 gcaaacacgg actgatactt ctcgatccgc tggactcgca actgaagaac ctggccgcgc
      961 ctttgtacgc agaagccgcg cgccgcgcgc acgagatcgc gaccgcgatt gccagtcgca
     1021 gtcacgaatt ggagcaagcc ggctatcacg ctcaggtcgc tccgtctgag aattcttttc
     1081 ctctgttcct gcacgatgaa agcggcgcgc gccacgcgct cacgcgaacc aagaacggca
     1141 agtatcaaac gaaagcagag ggtcagaagc ccgaccgcga gggcgggcgc gatgcagcag
     1201 cagagtattc gcgcgatgaa ctcgctgact gggccttgcg cgagcccgaa cgattcagtc
     1261 ccaacgtcac gttgcgcgcg gtcgtgcagg attttctctt accgacggtt gcgtactacg
     1321 gcggcgctgc tgagattgct tacttcgcgc aaacttccga agtgtatcgc ctccttggtc
     1381 gcccggtgac gccgatactt catcgcgcca gcatgacgat ggttgagaaa cacacctggc
     1441 gctcgctgga acgctataac attggtctaa cggatttctt cgcgggattc gaccatgtcg
     1501 tcgctcgcgt cgtcgaagag tatttgagca aggaaacttc cgcagctttc gatcatacga
     1561 cccggacttt caatagcgag cttgacgcgc tacaggaaca acttcgccgc atcgatccga
     1621 cgctggccga agccctggaa aaaggccggc gcaagatcaa ctaccagatc gatggcttgc
     1681 gcactcgctt taatcgagcc caggtgggcc gtgatgaggc agtacatcgg cagatagagc
     1741 gcgcattcga tcttctttat ccggaaaaga ctttgcagga g
//
LOCUS       DASZZE010000254         3133 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_152007, whole genome shotgun sequence.
ACCESSION   DASZZE010000254 DASZZE010000000
VERSION     DASZZE010000254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3133)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3133
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152007"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..328
                     /locus_tag="VHD88_04930"
     CDS             <1..328
                     /locus_tag="VHD88_04930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21168.1"
                     /translation="NKETGRIDRTYRLGPGFSWQLTKHMGLTANLANTIAGDAAKTSH
                     SRNTEFDASWTYRFARGKEGLKKVSGQFFIRYANHYSHTLERIFVSDTLRKNQTLTAN
                     LGITFF"
     gene            420..1688
                     /locus_tag="VHD88_04935"
     CDS             420..1688
                     /locus_tag="VHD88_04935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21169.1"
                     /translation="MNRFLLLAIALAFFCAPVVAQTISVSPSDVNAYSQGATSVLLTF
                     GGLINKRPAEATWCGALIPATPDLGLKCDPATIFGRLPARYDQSVRSGTNAFTDIVSI
                     TPQVARRAYLDAVRGNTSTFFYVRRFISTVAGPDEFVPVTIRLSGNGARVPLSLTEVK
                     LTWGVGKPVLFVKTSEKLPQFEAQLTYTGTGRLKGRWELVKPGETPPEPRDLLTEATL
                     PFEERGTQKRYTEISRFNLYLPPTGKIVLPGPEVWRVDESLNGLYLVLLRIEASDDKE
                     GDTNLASVGAGAGVVHGGAVAGFSLPTLRYYVGNGDYSQSVAVSGAAMTQLLPDDRAV
                     LSPDKPVDFKWTLIDNATTYRLEVQDLQGNPIVSAILTTGVSNYRAPSWLRDRVRDTV
                     MQWRVIAFDQTGKEIVETEWHSLRFKESAK"
     gene            complement(1693..>3133)
                     /locus_tag="VHD88_04940"
     CDS             complement(1693..>3133)
                     /locus_tag="VHD88_04940"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HVS21170.1"
                     /translation="VFALAPTTAVVYRPFLLTAFIVTLFVSLVCIAWLLRGLLQPYSQ
                     LVGEARRAPVTHSGRTQNEAAFVLETFQSVIAQLQAQQQELERLSDQASQRADSAERF
                     SERIVASMPTGLIAFDSSGRATVVNRPARVLFESEPHAPGEHFGVMFSHAPALAEMVE
                     ACLANGTLFRREEIEATNGLGQPKRLGATVAPIDPTNESGPRGALCLLTDITEVTRLR
                     EQVALKRNLESLGEMSAGLAHEFKNAMAALHGYAQFLQSIDHDEQGKAAADALLQEVR
                     NLSEMTTAFLNFARPQPLQLEEVSLDELIEECARELAPLFEERKVELILAPGVSSAPP
                     LRSLRLSGEPSPAIDHYGDTEKTEAAQRLEVRADARMLRQALLNLLRNAAEAIEDTTT
                     NRRVTVAASTESDQSGKQWAVISIEDTGNGIPASDLQKIFIPFFTTKSQGHGVGLALA
                     HRVITGHGGTLTAASAPEGGAVFEIRLPA"
BASE COUNT          672 a          873 c          904 g          684 t
ORIGIN      
        1 gaacaaagaa actggccgca tcgatcgcac ttatcggctg ggaccgggct tttcatggca
       61 actaacgaag cacatggggt tgactgcgaa cctggcgaac accatcgccg gcgatgcggc
      121 gaagacgagt catagtagaa acacggaatt cgacgcttcg tggacttatc ggtttgcgcg
      181 aggcaaggaa ggattgaaga aagtctcggg gcagtttttc attcgctacg ccaatcacta
      241 ttcgcatacg ctggaacgca tcttcgttag cgacacgctg cggaagaacc agacgctgac
      301 ggcgaatctg gggattacgt ttttctgatg tacgacaaac tttggtttgt cgatggctag
      361 gacggcggca acttgcgaca aactgaagtt tgtcggacat tgatcggacg aacaaagtca
      421 tgaatcgatt tctacttctc gcgatcgccc tcgctttctt ttgcgcgcct gtcgtcgcgc
      481 agacgatttc agtttcgccc agcgacgtca acgcttattc gcaaggcgcc acttcagtgc
      541 tgctgacttt tggcggcttg attaataaac gtccggcgga agccacctgg tgcggagcgt
      601 tgattccggc cacgcctgat cttggtttga agtgtgaccc ggcaaccata tttggccgtc
      661 ttcccgcgcg ctatgatcag tcggtacgca gcggcacgaa tgcctttacg gacattgtgt
      721 cgatcacgcc gcaagtggcc cgccgcgctt acctcgacgc ggtgcgtgga aacacgagta
      781 cattctttta cgtgcgacgc ttcatcagca ccgtggccgg tccggatgag ttcgtgccgg
      841 tgacgatcag gctgagtggc aacggcgcgc gcgtcccgct gtcactcact gaagtgaaac
      901 tcacctgggg cgtgggcaag ccggttctat tcgttaagac gagcgagaag ctgccgcagt
      961 ttgaagctca gctcacttac accggcacgg gccgtttgaa aggacgttgg gaactggtta
     1021 agccgggtga gactccgccc gagccgcgcg atcttttgac cgaagctacg ctaccgtttg
     1081 aagaacgcgg cacgcagaag aggtacaccg agatcagccg gttcaatctg taccttccgc
     1141 cgaccggaaa gatcgtcttg cctggaccag aagtgtggcg cgtggatgaa agtctcaatg
     1201 ggttgtacct ggttctgctg cgcatcgaag cttctgacga taaagaaggc gacacaaacc
     1261 ttgcttcagt tggtgccggc gccggagtag ttcacggcgg cgctgtagca ggattctcgc
     1321 tgccgacgct gagatactat gttggaaatg gtgattattc tcaatcggtc gctgttagcg
     1381 gagcggcaat gacgcaactg ctgccggatg atcgcgcggt tctgtcaccc gacaagcctg
     1441 tcgatttcaa atggactcta atagacaacg ccacgactta ccggcttgag gtgcaagacc
     1501 tacaaggtaa tccgatcgtc tccgcgattc tgactactgg cgtcagtaac tatcgcgctc
     1561 cttcgtggct cagagaccga gtccgcgaca cagtcatgca gtggagagtc attgcttttg
     1621 atcaaacagg caaggagatc gttgagaccg agtggcacag cttacgattt aaagaatcag
     1681 cgaaataacg cctcacgctg gaagtcgtat ctcgaaaaca gccccgcctt ccggagcact
     1741 cgccgccgtg agtgtcccgc catgccccgt aataacccga tgcgccagcg ccagaccgac
     1801 gccgtggccc tgtgatttcg tggtgaagaa gggaatgaaa atcttttgca ggtcagaggc
     1861 gggaatgccg ttgcccgtat cttcgattga aatgacggcc cactgcttgc cgctctgatc
     1921 gctttcagtc gaagcggcaa ccgttacgcg tcgattggtt gtagtgtcct cgattgcctc
     1981 ggccgcattg cgtagaagat tcaaaagcgc ctgtcgcagc atacgagcgt cggctcgaac
     2041 ttcaagtctc tgtgctgcct ccgtcttctc cgtgtctccg tagtgatcga ttgcgggaga
     2101 aggttcaccg ctgagccgca gagaacgcag agggggcgca gaggaaactc caggtgcgag
     2161 aatcaattca acctttcgct cctcaaacag cggcgccaac tctcgcgcgc actcttcgat
     2221 caactcatca agcgaaacct cctcaagttg caacggctgc ggtcgcgcga aattcagaaa
     2281 cgccgttgtc atctctgaaa gatttctgac ttcctgcaac aatgcgtccg ccgctgcttt
     2341 gccttgctca tcgtgatcga tgctctggag aaattgcgca tagccgtgca gcgcggccat
     2401 tgcgttcttg aattcgtgcg ccagaccggc ggacatctca ccgagacttt ccagatttcg
     2461 cttgagcgcg acttgttcgc gcaaacgcgt gacctctgta atatcggtca gcagacacag
     2521 cgcgccgcgc gggccggatt cgtttgtggg atcgatcggt gcgaccgtgg cgccgaggcg
     2581 cttcggttgg cccagaccgt tagtcgcttc gatctcttcg cgacggaata gcgtgccgtt
     2641 ggcgaggcaa gcctcaacca tttccgccag cgccggcgca tgcgaaaaca tgacgccaaa
     2701 gtgttcgccc ggcgcgtgtg gttcgctttc gaaaaggacg cgagccggtc tgttgacgac
     2761 cgtggcgcgg cctgatgaat cgaaagcgat caagccagtc ggcatgctgg cgacgatgcg
     2821 ctcgctaaat cgttcggctg aatccgcgcg ctggctggct tgatcgctca gccgttccag
     2881 ctcctgttgc tgcgcttgaa gctgagcgat tacggattgg aacgtttcga gcacgaacgc
     2941 agcttcgttt tgagtgcggc ctgaatgcgt taccggcgcg cgtctcgcct cgcctactaa
     3001 ttgactgtac ggttgcaaca gcccgcgcag cagccacgca atgcaaacca gactgacgaa
     3061 aagcgtgacg atgaaagcgg tgagaagaaa tggtcgatag acaaccgcgg tagttggcgc
     3121 caacgcgaag acc
//
LOCUS       DASZZE010000255         6250 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_249777, whole genome shotgun sequence.
ACCESSION   DASZZE010000255 DASZZE010000000
VERSION     DASZZE010000255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6250)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6250)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6250
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_249777"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..457
                     /locus_tag="VHD88_04945"
     CDS             <1..457
                     /locus_tag="VHD88_04945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21171.1"
                     /translation="RLLVLDEPTTGLDPQVRQEIWQKLEELRRVSGVTILLSTHYMEE
                     AEKLCERLVVMDHGKILASGTPRELVLAKVSRYALEVREVGDLALRTTSNGIAAVARN
                     NAHFYFAPEAETLTPIMKEYEGRRRMIRLSNLEDVFLQLVSDNESVPPA"
     gene            478..972
                     /locus_tag="VHD88_04950"
     CDS             478..972
                     /locus_tag="VHD88_04950"
                     /inference="COORDINATES: protein motif:HMM:NF016085.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF402 domain-containing protein"
                     /protein_id="HVS21172.1"
                     /translation="MSASNVAAPAQIVVRVLKYDGKEYRRWNARMARKEGSLLILEAE
                     FEFEVQHDSLGRIQRGTRTIEYYWLDRWYNIFRFLESDGRTRLYYCNVNMPPTFGGSE
                     LRYIDLDIDILVQPDLSYQVLDLEEFEANAIRYDYSEEVKSRTHAAVDELVAMIETRQ
                     FPFA"
     gene            1007..1786
                     /locus_tag="VHD88_04955"
     CDS             1007..1786
                     /locus_tag="VHD88_04955"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HVS21173.1"
                     /translation="MTLATTHVNLRDALAVWRRDVEVHLRLWKMNLIAPVIEPVFSVL
                     AFGWGLGALVAGKVSGISYLSFVGAGILGLTVLMRAMFETTYAAYFRMVYQSTYDAIL
                     ATPVDAESLAFAEILWAITHGLLDTIIILIVLVIFGAATSPWAAIAGLPLLVGSLFIA
                     GLSLGITAHVHDIDAFNVYMAAFFTVMLICGAWFPVDVLPTWLRMIAYAIPLTESIDL
                     TRALLTGRFLSRHAYEAAYLVISAVVACEWAMRSLRKRMVA"
     gene            1826..2410
                     /locus_tag="VHD88_04960"
     CDS             1826..2410
                     /locus_tag="VHD88_04960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21174.1"
                     /translation="MVVRIVIVLCLLLAVGSASTQSKNLLKNPTGEEGLQSWRVFGNA
                     SVSDCFGAGKCFSIHEDGYILQDINISESAVGMFAVLIGFASIEETNPDGSLGHPYLY
                     GYMMNPGEPRGGTIFSYLTGQEMANRPSASGEWAKQYGVFKVPEKTGRIRMFFRSGCP
                     KTQTSTNCVSRFREPGVFLFGTEDEAKAFISGYQ"
     gene            2440..4011
                     /locus_tag="VHD88_04965"
     CDS             2440..4011
                     /locus_tag="VHD88_04965"
                     /EC_number="6.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016874 - ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA carboxylase subunit beta"
                     /protein_id="HVS21175.1"
                     /translation="MSSQKQQPAKTSKLDQLREREQRADAGGGAARVEKQHAAGKMTA
                     RERVEFLLDEGTFQEFDKLVEHRSRDFGMEKEIYPGDGVITGHGLIDGRKVFVFAQDF
                     TVFGGSLSETHAEKICKVMDLAMKVGAPIIGLNDSGGARIQEGVVSLGGYADIFLRNT
                     LASGVVPQISCIMGPCAGGAVYSPAITDFNIMVKDTSYMFITGPEVIKTVTHEDVTKE
                     ELGGASTHNRKSGVAHFAADSDEHALRMVRELLSFIPSNNVDDPPRLSSTDSADRIEP
                     KLNSIVPEASNQPYDIREVIDLIVDDAYFFEVHREYAPNIVVGFARLDGRSVGIVANQ
                     PAYLAGVLDIDSSIKGARFVRFCDCFNISIVTFEDVPGFLPGISQEHGGIIKHGAKLL
                     YAFAEATVPKVTVITRKAYGGAYCVMGSKHIRTDINFAWPSAEIAVMGPEGAVDILYR
                     RKLAEASDKPSARRARVTELEDKFASPYVAAERGFIDEVIEPAQTRPKLIRALALLEN
                     KRDTNPPKKHGNIPL"
     gene            4686..5147
                     /locus_tag="VHD88_04970"
     CDS             4686..5147
                     /locus_tag="VHD88_04970"
                     /inference="COORDINATES: protein motif:HMM:NF024865.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HVS21176.1"
                     /translation="MKRLLVVALVVSTLCLPALAQKKGGDDFNDLIKRYYSAWNTLNP
                     DNASFLYAKDADLVFFDIAPLKYSGGWQEYRDNFKKNVAPGFSSLTLTPNNDVKVTRR
                     GNVALTTLTFHLSAKQKDGGALDFDARHTIVWEKRGGQWLIIHEHVSKPLF"
     gene            complement(5328..>6250)
                     /locus_tag="VHD88_04975"
     CDS             complement(5328..>6250)
                     /locus_tag="VHD88_04975"
                     /inference="COORDINATES: protein motif:HMM:NF025034.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aspartyl protease family protein"
                     /protein_id="HVS21177.1"
                     /translation="GTRAVSFGTALSVAGDIKNLDKVAANVAPAIIVPRPVTFRDVPG
                     RGLLLRTWVNSAGPFSFAIDTGAGATLLSPRVASEAQVTIKRGRGNPIAGLSGAPGST
                     QDATVRSIAIGDSENYLPAKGDVVVTRGLPSDLDGVLDPTEAFAPLGYVIDIPRRELS
                     GFDPHALPLRLDEQPADGAVVQWLREGHSRRPFVQLDNGDRALLDTGSNLALAIRDRD
                     DESNNQRVSGSVIRDVGGGNVSARRARPTNVAIGSLTLRNIPTDVISGAEANAPVLLG
                     LSALRPFRLRFDPVHHLIEIAPGVSQYHLR"
BASE COUNT         1340 a         1696 c         1753 g         1461 t
ORIGIN      
        1 gcgattgctg gttctggatg aacccacgac tgggctcgat ccgcaagtgc gtcaggagat
       61 atggcaaaag cttgaggagc tgcggcgcgt cagtggtgtg acgatcttgc tttctacgca
      121 ttacatggaa gaagccgaaa agctttgcga gaggttagtg gtaatggatc acggcaagat
      181 tctcgcgagt ggaactccgc gtgagctggt tctcgcgaaa gtctcgcgtt atgcgttgga
      241 agtacgtgag gttggtgatc tggcgttgcg cacgacaagc aacggcatcg ccgcggtggc
      301 gcgcaacaat gcgcactttt atttcgcgcc tgaagctgaa acgctaacgc cgatcatgaa
      361 agagtacgaa ggtcgccgtc ggatgattcg tctgtcgaac cttgaggacg tcttccttca
      421 actcgtcagc gataacgagt cagtaccgcc cgcgtaagcg ggtgggactt tccgtcaatg
      481 agcgcatcca acgtcgcagc acctgcccag atcgtcgttc gcgtcctcaa gtacgacggc
      541 aaggagtatc gtcgctggaa cgcacgcatg gcgcgaaagg aaggttcgct gctgatactt
      601 gaagctgaat tcgaattcga ggttcagcat gattcgcttg ggcggattca acgcggaact
      661 cggacaatcg aatattattg gctggatcgt tggtacaaca tctttcgctt tcttgagagc
      721 gatggtcgga cgcgactgta ttactgcaac gtaaacatgc cgcccacttt cggaggcagc
      781 gagttgaggt acatcgatct ggatattgat attctggtgc agccggacct ttcatatcag
      841 gttttggacc tggaagaatt tgaagcgaat gcgattcgct atgactattc ggaggaagtc
      901 aagagtagaa cgcacgctgc cgtcgatgag ctggtcgcta tgatcgaaac gcgccagttc
      961 ccttttgctt gagatcctct gcgtcctccg tggttaatta ttcttaatga ctcttgctac
     1021 gacgcacgtc aacctgcgcg atgcgctcgc cgtctggcgg cgcgatgtag aagtgcatct
     1081 gcgtctgtgg aagatgaacc taatcgcgcc ggtgatcgag ccggtctttt cggtgctggc
     1141 gttcggttgg ggtttgggcg cgctcgttgc cggcaaagtc tccggcattt cttatctttc
     1201 gttcgtgggc gcaggcatac tcggtctcac tgtcctgatg cgcgcgatgt tcgaaacgac
     1261 ttatgccgca tactttcgca tggtctatca atcgacttac gatgcgattc tcgcgacgcc
     1321 tgtcgatgcc gagtcgcttg ccttcgccga gattctttgg gctatcactc atgggctgct
     1381 tgatacgatc atcatcttga tcgtgctggt aatcttcggc gctgctactt cgccgtgggc
     1441 ggcaatcgcc ggcttacccc tgctcgtagg cagtttgttt atcgcgggcc tgtcgctggg
     1501 aatcaccgcg cacgttcacg acattgatgc tttcaatgtt tacatggcag cgttcttcac
     1561 ggtcatgctg atttgtggcg cgtggtttcc ggttgacgtt ttgccgacgt ggctccgcat
     1621 gattgcgtac gctattcctt tgactgaatc aatcgatctt actcgggcac tgttgacggg
     1681 ccgctttctc tcgcgccacg cgtatgaagc ggcttatctg gtaatatctg cggtagtagc
     1741 ctgtgaatgg gcgatgagga gtttgcggaa gaggatggtg gcttagcccg attctaatcg
     1801 accgcctttt tgcatggagg tccttatggt ggtacgcatc gtaatcgtgt tgtgcttgtt
     1861 gctggcagtt ggctcggcgt caacccaatc aaagaatctt ttgaagaacc caaccggcga
     1921 ggagggcttg cagtcttggc gcgtcttcgg caacgcctca gtctctgatt gtttcggggc
     1981 cggaaagtgt ttctccattc acgaggacgg ctacattctt caagacataa acatctcgga
     2041 aagcgcagta ggaatgttcg ctgtcttgat aggttttgcc tcgatcgagg agacaaatcc
     2101 tgacgggtca ttgggccatc cctatctcta tggttacatg atgaacccag gcgagccccg
     2161 tggcggaacg atcttctctt acctcaccgg acaggaaatg gcgaatcggc ccagtgcaag
     2221 tggggagtgg gcaaagcaat atggagtctt taaggtaccg gagaagacag gtaggatccg
     2281 gatgtttttc cggtctggtt gccctaagac ccaaacgtcg actaactgcg tcagccgttt
     2341 tcgcgagccg ggcgtgtttc tcttcggcac cgaggacgag gctaaggcgt ttattagcgg
     2401 ctatcaatag gtcacgcgcg tccgttacga agctcagcaa tgagttcaca aaaacaacaa
     2461 cctgcgaaga cttccaagct tgatcaactc cgcgagcgtg agcaacgcgc cgacgcaggc
     2521 ggcggcgctg cgcgcgtcga gaagcagcat gccgcgggca agatgaccgc gcgcgagcga
     2581 gttgaattcc tgctcgatga aggcacgttc caggagttcg acaagttggt cgagcatcgc
     2641 tctcgcgatt tcgggatgga gaaagaaatc tatcccggcg acggagtcat caccggtcac
     2701 ggcttgatcg atggccgcaa agtttttgtc ttcgcacagg atttcacggt gttcggcggt
     2761 tccctttccg aaacgcacgc ggaaaagatt tgcaaagtga tggacctcgc catgaaagtt
     2821 ggcgcgccga ttatcggtct caacgattcc ggcggcgcgc gcatacagga aggcgtcgtg
     2881 agtctcggcg gctacgcgga tatttttctg cgcaacactc tggccagcgg cgtcgtgccg
     2941 caaatcagtt gcatcatggg cccgtgcgcg ggcggcgccg tatacagtcc ggcgatcacc
     3001 gacttcaaca tcatggtcaa agacacgtcc tacatgttca tcaccggccc cgaagtgatc
     3061 aagactgtca cgcacgaaga cgtgactaaa gaagaactcg gcggcgcgtc gacgcacaat
     3121 cgcaaatctg gcgtcgcgca tttcgcggcc gactcagacg agcatgcgct gcgtatggtg
     3181 cgcgagcttc tatcgttcat tccgtcgaac aatgttgacg atccgccgcg tctttcgtcg
     3241 acagattcag ccgacaggat cgagccgaag ctgaactcga tcgttccgga ggcttcgaac
     3301 caaccttacg acattcgcga agtgatcgat ctgattgttg atgacgctta cttctttgaa
     3361 gtgcatcgcg aatacgcgcc aaacattgtc gtcggctttg cgcgtcttga tggccggagc
     3421 gtcggcatcg tcgctaacca accggcttat ctcgccggcg tgctggatat cgatagctcg
     3481 atcaagggcg cgcgtttcgt ccgcttctgt gattgcttca acatttcaat cgtgactttc
     3541 gaggacgtgc cgggattttt gcccggcatt tcgcaggagc acggtggcat catcaagcac
     3601 ggcgcgaaac tgctctatgc cttcgccgaa gcgacggtac cgaaagtcac cgtgatcaca
     3661 cgcaaggctt acggcggcgc gtactgcgtg atgggctcga agcacattcg caccgacatc
     3721 aacttcgcct ggccgtcggc agagattgcc gtgatgggac cggaaggcgc ggttgatatt
     3781 ctctatcgtc gcaaactcgc cgaagcttca gacaaacctt ccgcgcgccg cgcgcgcgtc
     3841 actgaactag aagacaaatt cgctagtcct tacgtcgccg ccgaacgtgg cttcatcgac
     3901 gaagtaatcg agcccgccca gacccgtccc aaactaatcc gcgctctcgc gctgctcgag
     3961 aataagcgcg acacaaaccc gccgaagaag catgggaata ttccgttgtg attagaaagg
     4021 ccaacccacc ctcggatcag aaacgtcgtc gccactctcg atcgtgtctg gcggcgtaaa
     4081 gcacagcgcc aacaacgaca gtctttttcg cttcgattac ttcgtagatt actcgataag
     4141 gaaaacgctc gggatatcgc cagcaaatgt tcttgctcgg atgacggcga caatgtagca
     4201 gtgggtttat ggcgagcgcg tcgaagaccg cgattgtctc ttctgaaaat cttgcgccga
     4261 ggccttcgct acagctttcg taccaggagg ccgcttcgac gacatcatct cttcagcttc
     4321 agggcgtaca acaaacgcgc cagttcattg tcttatgcgg gagcgcatgc gcgccttgga
     4381 ttctacgagc ggtatcgacg aactaggatc agcgtgatga gcggctaatc gtgattcgac
     4441 cagcgcttca tccgcctcag acagtggcgg ctcgtccagg tcgattgccc tccgaatgag
     4501 gaattgacgc tgttgaaacg taagattcgg aagttcttcg agaacctgcg tgaaactcat
     4561 ggctgtgtac cgacacaagc ggttcttttc aagactcatt cgccaagctc tgactcttga
     4621 cttaacctat cagttggcat agaagcatcc cgctctgtca tttcttatcc tggagtcaat
     4681 ttcaaatgaa acgcttactc gtggtggctt tggtcgtaag cacgctttgt ctgcctgcac
     4741 ttgcgcagaa gaaaggcgga gatgatttca atgacctgat caagcggtat tactcggcat
     4801 ggaacacgct caatcccgat aacgcttcgt tcctgtatgc gaaggacgcc gatttggtct
     4861 tctttgacat cgctccactg aagtacagcg gcggctggca ggagtatcgc gacaacttca
     4921 agaagaatgt cgcgcctggt ttctccagtc tcacactcac gcccaacaac gatgtgaagg
     4981 tcacgcgcag aggcaatgtg gcgttgacga ctctgacctt tcatctgtca gccaaacaga
     5041 aggacggcgg cgcgttagat ttcgatgccc ggcacacaat cgtctgggaa aaaagaggcg
     5101 ggcagtggct gattatccac gagcatgttt cgaagccgtt gttctagtga agcgttaatc
     5161 gtaaatcgtg aatggaacag gttcgagcgc tgaaggcgcg aaatgggatt gattggggtc
     5221 cacgtcatgt cgcgccttca gcgctcaacc tagactctta tcgttttgat ccaggggcgg
     5281 cgcccctggc tattacatct cacgccttca gcgtgatgac ccacccgcta acgcaggtgg
     5341 tactgactaa cacctggcgc gatctcgatt agatgatgga cgggatcgaa gcgcagtctg
     5401 aatggacgca gcgcgctcag gcctaacaga actggtgcgt ttgcttcggc gccggaaatc
     5461 acatcggtcg gaatatttcg cagagtgagc gaaccgatcg ctacgttagt tggtcgcgcg
     5521 cgtcgcgctg agacgttgcc gccgcctaca tcgcggatca cactccctga gactctctga
     5581 ttgtttgact cgtcatcacg atccctgatc gccagagcga gattcgatcc agtatccaac
     5641 aatgctcgat cgccgttatc aagctgaacg aacggcctgc gactatgtcc ttcacgcagc
     5701 cactgcacaa ccgcgccgtc ggctggttgc tcatccaatc gcagcggcaa tgcgtgagga
     5761 tcaaatccag aaagctcacg acgcggaata tctatgacgt atcccaatgg cgcaaacgct
     5821 tcggtcggat ccaacacgcc gtcaagatcg ctgggcaagc cacgcgtcac aaccacatct
     5881 cctttggcgg gcaaatagtt ttcgctgtct ccgatcgcga tgctgcgaac tgttgcatct
     5941 tgcgtcgatc cgggcgcgcc gctgagtccg gcgataggat ttcctcgacc acgtttgata
     6001 gtgacttgag cttcactggc aactcgcggc gatagcagcg tggcgccggc gcccgtatcg
     6061 atcgcaaagc tgaacggtcc tgctgagttg acccacgtcc tcaacaatag cccgcgcccg
     6121 ggaacgtcgc gaaacgtcac gggtcgcgga actataatcg cgggcgcgac gttagctgcg
     6181 actttgtcga ggttcttgat atctcccgca accgaaaggg cagttccaaa cgaaactgcc
     6241 cttgtgcctg
//
LOCUS       DASZZE010000256         1538 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_74119, whole genome shotgun sequence.
ACCESSION   DASZZE010000256 DASZZE010000000
VERSION     DASZZE010000256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1538)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1538)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1538
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74119"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..712)
                     /locus_tag="VHD88_04980"
     CDS             complement(<1..712)
                     /locus_tag="VHD88_04980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21178.1"
                     /translation="MIRRQLAATLLLLALIVPYVAFGQQPGAPQQPAADPNDPIVRIK
                     DEEMNRSQVMQTLSYLSDVIGPRLTASPNMKRACNWTRDTLEKWGMQNAHLEAWGPFG
                     RGWTLKRFSAQVTDPQDIPLIAYPKAWSPSTNGAITGEVVFLDAKNEADLEKYKGKLK
                     GAIVLTAVPRELKARFEPLGTRRDEKSLLALADAPAPGGGPNRGGGGGGGFRMTPEQR
                     AALQFNVRKLMFAQEEGVA"
     gene            982..>1538
                     /locus_tag="VHD88_04985"
     CDS             982..>1538
                     /locus_tag="VHD88_04985"
                     /inference="COORDINATES: protein motif:HMM:NF024785.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HVS21179.1"
                     /translation="MSSAKTQPARGMRDFLPADVRKREYVIGVIRSVYERYGFEPLET
                     PAVENIETLMGKYGEEGNQLIFKILKRGEHEKTGEADLALRYDLTVPLARVVAQYQNE
                     LPKFFKRYQIQPVWRADRPARGRFREFYQCDVDVLGSRSMLVEAELCAAASDALVALG
                     FKDFVVRLNHRQALAAVLNNAGVTV"
BASE COUNT          301 a          453 c          443 g          341 t
ORIGIN      
        1 ccgctacgcc ttcttcctgc gcgaacatca gcttgcgcac attgaattgc agagccgcgc
       61 gctgctcagg cgtcatgcga aaaccaccgc ctccgccacc accgcggttt ggcccgccac
      121 ccggcgccgg cgcatcggcc agcgctagca aactcttttc gtcgcggcgc gtgcccaacg
      181 gctcaaagcg cgctttcaac tcgcgtggca cggccgtcaa aacgatcgcg cctttcaact
      241 tgcccttgta cttttccaga tccgcttcgt tcttcgcatc gaggaaaact acttcaccgg
      301 taatcgcgcc gttggttgac ggcgaccagg ctttcggata agcgatcagc ggaatgtcct
      361 gcgggtcggt gacctgcgcg ctgaaacgtt tcagagtcca accacggcca aacggtcccc
      421 acgcttccaa gtgcgcgttc tgcatgcccc atttttccag cgtgtcgcgc gtccaattgc
      481 aagcgcgctt catgttcggc gacgcagtca gtcgcggccc gatcacgtcg ctcaaatacg
      541 aaagcgtctg catgacttgc gagcgattca tttcctcgtc cttgatacgg acgatcggat
      601 cgtttggatc ggccgcgggc tgctgtggtg ctccaggctg ctggccgaac gcgacgtacg
      661 gcacgatcaa agcaagaagc agaagggtgg cggcaagttg gcgtcggatc atcgggtggc
      721 tcctatctga gaaattgatt tggaaacgct gctcgttcgc cttgcagtca aggggacgtg
      781 cttctctgga attgacgttg cttatactcg gaaagttaca aagattcaag agcgggaagg
      841 atttactcgg cgacctctgc gaaatcccct gcgtacctct gcgtttaatt ttcgtgtgac
      901 tacgccctcc ctgacggtcg ggctactgcc cactctgatt tcgggttatg attgccggcg
      961 aattacttca gagctaactc gatgtcttca gccaagaccc aaccggcgcg cggcatgcgc
     1021 gactttctgc ccgccgacgt gcgcaaacgc gagtacgtca tcggcgtgat aagatccgtg
     1081 tacgagcgct acggtttcga gcctttggag actcctgccg tcgaaaacat cgaaaccctg
     1141 atgggcaagt atggcgaaga aggcaaccag ctcatcttca aaatcctcaa gcgcggcgaa
     1201 catgaaaaga ccggcgaggc ggatctggcg ttgcgctacg atctgactgt gccgctggcg
     1261 cgcgtcgtcg cgcaatatca aaacgagctg ccgaaatttt tcaagcgcta tcagattcaa
     1321 ccggtctggc gcgccgatcg tcccgcgcgg ggccgcttcc gagagttcta tcaatgcgat
     1381 gttgacgtgc tggggtcgcg atcgatgctc gtcgaagcgg agttgtgcgc ggcggcgagc
     1441 gatgcattgg tcgcacttgg tttcaaagat tttgtggttc gtttgaatca tcgccaggcg
     1501 ttggcggcgg tgctgaacaa tgccggcgtt acggtgga
//
LOCUS       DASZZE010000257         2615 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_122587, whole genome shotgun sequence.
ACCESSION   DASZZE010000257 DASZZE010000000
VERSION     DASZZE010000257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2615)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2615)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2615
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122587"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..830)
                     /locus_tag="VHD88_04990"
     CDS             complement(<1..830)
                     /locus_tag="VHD88_04990"
                     /inference="COORDINATES: protein motif:HMM:NF014683.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HVS21180.1"
                     /translation="MTWSQVYDPLSRVVLSTALAALPILVLLGSLGVFRIKAHYAASL
                     GLTTSVIVAFAVFRMPSTMILASAAYGCAYGLFPIGWIVLNVIFLYQLTNERGLFERL
                     RQSITGLTQDRRLQLLLVAFSFGAFIEGACGFGTPVAVTGAILIGLGFSPLSASGLSL
                     IANTAPVAFGALGAPLIGLQGVTGLDLKELSAMVGRQLPFFSLIVPFWLIWAFAGFRG
                     MLEIWPAILVASVCFAIPQFLVSNFHGPWLVDVVAAIVSIAALSVFLKFWQPKNIWRH
                     "
     gene            complement(873..1268)
                     /locus_tag="VHD88_04995"
     CDS             complement(873..1268)
                     /locus_tag="VHD88_04995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21181.1"
                     /translation="MVNETMQQCPFCSVPLDPAVVALIAERQEKANQACSDASYVRTA
                     AIAMFVFLGVSLIPFVAFAFWGFLLTFIAVLVMLIRWQVKFGNLLTSDPDYKLAKRSR
                     NRALGLWIAAIPLGFVVRPLIDVLLARLL"
     gene            complement(1385..1852)
                     /locus_tag="VHD88_05000"
     CDS             complement(1385..1852)
                     /locus_tag="VHD88_05000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21182.1"
                     /translation="MDHISSDWIECETTTHQDHVIAHVIGATVLGWFVAGEAAHLLLD
                     IGFLWTIYLDGEMNLLPQGVAIAELDSDTASSADKTEIAFDAQLLLSEGREAGGLKRF
                     TASPVECLITSVELFSSDSKRRIIIRGEIANIEIEAAPESGQVSVCESHTSTV"
     gene            complement(1985..>2615)
                     /locus_tag="VHD88_05005"
     CDS             complement(1985..>2615)
                     /locus_tag="VHD88_05005"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HVS21183.1"
                     /translation="AADGAEKSSLSLAALIEGLRFVWRTPIIVQTMTLDFVATFFASA
                     NQLLPIFAKDILKIGAQGLGFLASAPAIGAVIAGLVMARFGTLRKQGAVVIGSIAIYG
                     AATVAFGFSRIFWFSLVMLAVTGAADTVSTILRQTIRQLSTPNNLRGRMTSINMIFFM
                     GGPQLGEVEAGTVAALIGAPLSVVTGGIGCLIGAIVALLAAKNLRRYEQ"
BASE COUNT          662 a          761 c          694 g          498 t
ORIGIN      
        1 tcatgccgcc agatgttttt cggttgccag aatttcaaga agacggagag tgcggcgatc
       61 gaaacgatcg cggctaccac atcgacgagc cacggcccgt gaaagttgga caccaggaat
      121 tgcggaattg cgaagcagac gctggcgacc agaatggcgg gccagatttc caacatgccg
      181 cggaagcccg cgaacgccca gattaaccag aacggaacaa tcagcgaaaa gaaaggaagc
      241 tgtcttccga ccatcgcgct caactctttc aggtctaatc cggtcacgcc ttgcaatccg
      301 ataagcggcg cgcccaatgc gccgaacgct actggcgcgg tgttcgcgat tagcgacaaa
      361 cccgacgccg acaatggcga gaagcctaat ccgatcagaa tcgctccagt aacggcgacg
      421 ggcgttccga atccgcatgc gccttcaatg aatgcgccaa agctgaacgc aaccagcagc
      481 agttgtaatc tgcggtcttg agttagtccg gtaatgcttt ggcgcaagcg ctcgaaaagc
      541 ccgcgctcgt tcgtcaactg gtaaagaaag atcacgttga gcacgatcca gccgatagga
      601 aacagaccgt acgcgcaacc gtacgccgcg ctcgcaagaa tcatcgtact cggcatccgg
      661 aacacggcga aggccacaat tacagaagta gtcagcccga gtgacgctgc gtagtgcgcc
      721 ttgatccgaa acactccgag acttccgagc agcacgagta tcggcaacgc cgccagcgcc
      781 gtcgagagca cgacgcgcga caaaggatcg taaacttgcg accaggtcat aagcgactga
      841 tgcgaccttc agaagagtcg cagttgatgg gtttagagca accgagccag caagacgtct
      901 atcaacggtc gaacgacaaa tccaagcggg atggccgcaa tccaaagacc taaagcgcgg
      961 ttccttgagc gcttggcgag tttgtagtca gggtcgctgg tcaggagatt gccaaacttc
     1021 acttgccagc gaataagcat gaccagcact gcgatgaacg taagcagaaa cccccagaaa
     1081 gcgaacgcga cgaaaggaat taagctgacg ccgaggaaga caaacattgc tatcgcagcc
     1141 gtcctgacgt aactggcgtc gctacatgct tgattggctt tctcttgcct ttcggcgatc
     1201 agcgcaacga ccgctggatc gagcggaacc gagcagaacg gacactgctg catagtttca
     1261 ttgaccatct cgttacagtt cgggcagcga aatgtgcgcg gttgaacaaa catgacctta
     1321 gctcctaact tgggggaatc gagtacgaca tcaagtattc acacgtcttg ttcaacgcgc
     1381 cgaatcatac ggtcgatgtg tgagattcgc aaacactcac ttgcccactc tccggcgccg
     1441 cttcgatttc gatgttcgcg atctcgccgc gaatgatgat gcggcgtttt gaatctgagg
     1501 aaaacaattc gacggacgta atcagacact caaccggcga agccgtgaag cgcttcaagc
     1561 cgccggcctc gcggccttcg ctcaagagaa gctgagcgtc aaaagcaatc tcggtcttat
     1621 ccgcgctgga ggcggtgtct gaatcgagtt ccgcaatcgc gacgccctgc ggcaacagat
     1681 tcatctcacc gtcaagataa atcgtccaca gaaatccgat gtcgagcagg agatgcgcag
     1741 cttcgccggc gacaaaccag cccagcaccg tcgccccaat cacgtgcgca atgacgtgat
     1801 cctgatgcgt cgtagtttcg cattcaatcc agtctgaaga aatatgatcc atgtgtttgg
     1861 aaccagcttt ctgttcatct cccttctttg ggagaagggc tggggaagag ggagttgttg
     1921 cgtgacgacc aaacatgccc tctccccgac cctctcccct ggggagaggg agtctgccta
     1981 ctgctcattg ctcatagcgt cgcagattct tcgcggccag caaagcaaca atcgctccga
     2041 tcaaacatcc gattccgccg gtcactactg ataatggcgc gccaatcagc gctgccaccg
     2101 ttccggcttc gacttcgccc aactgcgggc ctcccatgaa aaaaatcata ttgatcgaag
     2161 tcatccgccc gcgcaaatta ttcggagtcg agagctggcg aatcgtttgt cgaagtatcg
     2221 tacttactgt gtcggcggct cccgtcaccg ccagcatcac cagcgagaac cagaagattc
     2281 gcgagaagcc gaacgcgacg gttgctgctc catagattgc gatcgatcca atcacgaccg
     2341 cgccttgttt tcgcaaagtc ccgaaccgcg ccatcaccag cccggcgatc accgcaccga
     2401 tcgccggagc cgacgcgaga aaaccaagtc cctgagcgcc gatcttcaaa atgtccttgg
     2461 caaagatggg caacaactga tttgctgacg cgaaaaatgt ggcgacaaaa tccagcgtca
     2521 ttgtttggac gatgatcggc gtgcgccaga caaaccgcaa accttcgatc agcgcagcaa
     2581 ggctgaggct ggatttctca gctccgtctg ctgcg
//
LOCUS       DASZZE010000258         2802 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_152056, whole genome shotgun sequence.
ACCESSION   DASZZE010000258 DASZZE010000000
VERSION     DASZZE010000258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2802)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2802)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2802
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152056"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..869
                     /locus_tag="VHD88_05010"
     CDS             <1..869
                     /locus_tag="VHD88_05010"
                     /inference="COORDINATES: protein motif:HMM:NF013567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HVS21184.1"
                     /translation="RAQSVTTDWQTNSTADWRELIGKVDAVSLAVPTESHCEIASGLL
                     EAGIHVLVEKPISRTLAEADRMIAASKKGQAILQVGHAERFNPALVALRPHVRNPVYF
                     EIHRVGQFTARSLDIDVVLDLMIHDLDIVQWLVGEDIEVTSLHAVGIPILTERVDAAN
                     ARLEFASGAVANITASRVGTEKIRKMRFFQPHDYIVVDYTTNYASISNLAPSRTHGPW
                     PGVNTRTLEVQDIEPLRAEIEAFLSAATNRSQPVVSGEDGRRALALALRTLEQIEEHT
                     VRSGVSAYFGRA"
     gene            911..2032
                     /locus_tag="VHD88_05015"
     CDS             911..2032
                     /locus_tag="VHD88_05015"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HVS21185.1"
                     /translation="MLATRIAAGDFPSAVYLIGERGEAIYADAIGDAVREPEEHAATI
                     ETIYDLASLTKPLITGLLCALLIDSGELTLDSSVAQHLQEFDRADTHHITIRELLTHT
                     SGLPAWRPLYLLAEGKKEDALAAIANEALEYKTGVRVLYSDLGFITLGFLLQRLTGLS
                     FDDLARRKIIDRLNLPRTFFNPARSMQTHIAASEAGNAYERDMCERDFPSSKPVANVP
                     GSVTPYSGWRSGIIWGEVHDGNAYFLGGAAGHAGLFSTAGETFRLANQFIPGLSELLS
                     KETCQLFRQNMTPGLNEARSFAWQLAATKDSTAGPSLPPDAFGHTGFTGTSCWIDAAR
                     ERVFILLTNRTHAHALPFANINAVRREFHTLAIRALESN"
     gene            2045..>2802
                     /locus_tag="VHD88_05020"
     CDS             2045..>2802
                     /locus_tag="VHD88_05020"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HVS21186.1"
                     /translation="MEIDQGTNARAWTSRLARLRDFLSLERNVTIASGAVFLLGFGEE
                     LWKKFLPKYLEALGASTPIIGLFGTAEDCFDAVFQYPGGWIADRLGRQRAFLIFLALA
                     CGGYLVYFFCPSWPYAFLGLALVMAWQSMASPAIFAVIGDALPKEKRAMGFTVQSILK
                     RVPIVIAPVIGGVIIASRGIVAGVHIGLVVTLVVVAVTALLLRLINIAREAHHPTNIF
                     GVWNSFQPGLKRLLISDIFIRTCEGMADVLVILYV"
BASE COUNT          575 a          821 c          776 g          630 t
ORIGIN      
        1 atcgcgcgca aagcgtcacc acggattggc aaacgaattc cacggccgat tggcgagagc
       61 tgatcggcaa ggttgacgcg gtcagtcttg ccgttcccac cgaatcgcat tgcgagatcg
      121 caagtggtct gctcgaagcc ggcattcacg tgctggttga gaaaccaatc tcgcgcacac
      181 tcgcagaagc tgatcgaatg attgccgcca gtaagaaagg tcaagcgatt ttgcaggttg
      241 gtcatgccga gcgtttcaat ccggcgctcg tcgcgctgcg gccgcacgtg cgcaatccgg
      301 tctatttcga gattcatcgc gtgggccagt tcaccgcgcg ctcgttggac atcgacgtcg
      361 tgctcgactt gatgattcac gatctcgaca tcgtgcaatg gctggtcggg gaagacatcg
      421 aagtgacttc gcttcacgcc gtcggcattc cgattttgac tgagcgcgtc gatgcggcaa
      481 acgcgcgact ggaattcgcg tcgggagccg tagccaacat caccgcatcg cgcgtcggca
      541 cggaaaagat tcgcaagatg cgtttctttc aaccgcacga ttacatcgtg gtcgattaca
      601 ctactaacta cgcttcgatc agcaacctgg cgccgtcgcg tactcatggc ccatggccgg
      661 gcgtaaacac gcgcacgctg gaagtgcaag acatcgaacc gttgcgcgca gagatcgaag
      721 ctttcttgag cgcagcgacg aatcgttcac agccagtggt ttcaggcgaa gatggccgcc
      781 gcgcgctggc gctggcgctg cgcacactgg aacagattga agaacatacc gtgcgctctg
      841 gagtgagcgc ttactttgga agagcctgac cttggttgtg caccccacac gcaacgaaac
      901 aatctcgtcg atgctagcta cgcgcatcgc tgccggcgac ttcccttccg cggtttatct
      961 cattggcgaa aggggcgaag cgatttatgc ggacgcgatt ggtgatgctg ttcgcgagcc
     1021 ggaagagcat gccgcgacaa tcgaaacgat ctacgatctt gcttcactga caaagcctct
     1081 catcaccggg ctgctgtgcg cgctgctaat tgattcaggt gagctaacgc tcgacagctc
     1141 cgtggcgcaa caccttcagg aattcgatcg cgccgacaca catcacatca ccatacgcga
     1201 actgctaacc cacacgtcag gtctgcccgc gtggcgaccg ctttacttgc tggcagaagg
     1261 aaaaaaggaa gatgcgctcg cagccatcgc taacgaagct ttggaataca aaactggtgt
     1321 gcgcgttctt tacagcgacc ttggtttcat cactctcggt ttcttgttgc aaaggctgac
     1381 cggcctgtca ttcgatgatt tggcgcggcg caagatcatc gatcggctca acctgccacg
     1441 aacgtttttc aatcccgcgc gctcgatgca aacccacatc gccgcaagcg aggcgggcaa
     1501 cgcctacgag cgagatatgt gcgagagaga ctttccgtca agcaagccgg tcgctaacgt
     1561 tcccggttct gtaactccct attccggctg gcgcagcgga attatttggg gcgaagtgca
     1621 cgatggcaac gcgtactttc tcggcggcgc agcaggtcac gccggattat tttcgactgc
     1681 gggtgaaact ttccgattgg caaatcagtt tatccctggc ttatccgaat tgctgtcgaa
     1741 agaaacttgc caactatttc gccagaacat gacgcctggg ttgaacgaag cgcgctcgtt
     1801 cgcgtggcaa ctcgccgcca cgaaagattc aactgctggc ccaagtttgc cgcccgacgc
     1861 tttcggccac accggattca cgggcacaag ctgctggatc gatgccgcgc gtgaacgcgt
     1921 ttttattctt ctaaccaatc gcacgcacgc tcacgcgctg ccattcgcga acatcaacgc
     1981 tgtacgccgc gagtttcata cgctggccat aagagcgctc gaatccaact gacggcgagc
     2041 ctgaatggag atcgatcaag gaaccaacgc cagggcctgg accagccggc ttgcgcggct
     2101 gcgagatttt ctcagtcttg agcgcaacgt caccatcgcc tcgggcgcgg tgtttctact
     2161 cggcttcggc gaagagcttt ggaaaaagtt tctcccaaag tatctcgaag cgctgggcgc
     2221 cagcactccg atcatcggat tgttcggcac ggcggaggat tgcttcgatg ccgtctttca
     2281 atatcccggc ggctggattg ccgatcgcct gggtcggcaa agagccttcc tgatctttct
     2341 tgcccttgca tgcggcggct atctggttta cttcttctgc ccgtcctggc cttatgcgtt
     2401 tctcgggctt gcgctggtga tggcctggca aagcatggcc tcgcccgcga tcttcgcggt
     2461 aattggcgat gcgctcccca aagaaaagcg ggccatgggt tttaccgttc agtcgattct
     2521 aaagcgtgtg ccgatcgtga tcgcgcccgt tatcggcggt gtgatcatag cgtcgcgcgg
     2581 cattgtcgca ggagttcaca tcggactggt cgtcacgctc gttgtagtcg ctgtcacggc
     2641 tctgctgctt cgtcttatca acatcgctcg cgaagcacat cacccgacaa acatctttgg
     2701 cgtttggaat tcctttcagc ccggtttgaa acgcctgctc atctccgaca tatttatccg
     2761 cacttgcgaa ggcatggccg acgtgctggt catcctttac gt
//
LOCUS       DASZZE010000259         5401 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_189091, whole genome shotgun sequence.
ACCESSION   DASZZE010000259 DASZZE010000000
VERSION     DASZZE010000259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5401)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5401)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5401
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_189091"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(269..835)
                     /locus_tag="VHD88_05025"
     CDS             complement(269..835)
                     /locus_tag="VHD88_05025"
                     /inference="COORDINATES: protein motif:HMM:NF013731.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HVS21187.1"
                     /translation="MFSSCILTAARDLMMMNPLNSAATDDGIGENEITSPDPQLLDLV
                     PFVAGDRLFAVVADQVDGTAEAKTPAPLPHAPNAVLGVVCVRGRMLTVLDPVALLTHT
                     PSTLPQTLPCVIALRGDEQIALAAESCRDTITIASADIEASVESRENTDGLALGLVRY
                     GGEEITVLNAENLFTSAMLRRERRRRRF"
     gene            971..1303
                     /locus_tag="VHD88_05030"
     CDS             971..1303
                     /locus_tag="VHD88_05030"
                     /inference="COORDINATES: protein motif:HMM:NF014664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HVS21188.1"
                     /translation="MDEFDLYRAEMNEKLLGSGHLGIKRFFALDTQAYEDGALDKKTK
                     ELMGLTGSIVLRCDDCITYHIKQCADCGVTREQFLDAFNVALVVGGSITIPHLRRAAE
                     RLDQVLGR"
     gene            1608..3524
                     /locus_tag="VHD88_05035"
     CDS             1608..3524
                     /locus_tag="VHD88_05035"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-like domain-containing protein"
                     /protein_id="HVS21189.1"
                     /translation="MPVQEGDRIHAPELDGGRGWLNTDKPLSLSKLKGKVVLLDFWTY
                     GCINCMHIIPDLKKLEKKYPNELVVIGVHSAKFENEKDTENIRRIILRYEIEHPIVND
                     ADYAVWKSYGVNAWPTQVLIDPAGYIIGSLSGEGNYEAFDKAIGHTIAEFRKHGKLNE
                     EPLKLTLERAKVGDLPLAFPGKILADAKGGRLFIADSDHNRIVIAKLDGTLIETIGTG
                     AHGADDGAFDRATFFRPQGMVLDGDSVYVADTENHLIRRVDLKVRTVQTIAGTGQQSH
                     DYFQTGPARTIALSSPWDLQLVGRTLYIAMAGPHQIWQLDLDKNQVSTFAGSGREARH
                     DGSLLKAAFAQPSGITSDGKNLYTADSEANIIRQIDLASGEVRTLVGGDLFEFGDKDG
                     RGDGVRLQHPLGIFSLDGKLLIADTYNHKIKELDPQARTVKTFLGTGKPGQSDGAAPS
                     FYEPGGLSVANGKLYVADTNNHAIRITDLKTKETKTLQIRGLQPPASNQTAASAEVAP
                     NAEEIKLAPQKIRAGDATILINVELPKGYHLNPTAPQRYKVSVENGAQSITIDQQNAS
                     RTTKGLQLPVRIPVRASAGVAEIRASLTFVYCREDNTGTCRIKTLVWRAPVEVVTDAN
                     AAGEIRLSSKVSGD"
     gene            3673..4212
                     /locus_tag="VHD88_05040"
     CDS             3673..4212
                     /locus_tag="VHD88_05040"
                     /inference="COORDINATES: protein motif:HMM:NF012436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HVS21190.1"
                     /translation="MVDKPFLTDIKTLRERARRHIEKGAVTEGYSADRETVNKLLNEA
                     LATEIVCVLRYKRHYFMASGIHAEGVAAEFLQHANDEQGHADQIAQRIVQLGGEPNFS
                     PEGLLTRSHAEYVEGETLTDMIKEDLVAERIAIDSYRDMINYVGNDDPTTRRMMEGIL
                     AMEEEHADDLVNLLGELGK"
     gene            4250..5185
                     /locus_tag="VHD88_05045"
     CDS             4250..5185
                     /locus_tag="VHD88_05045"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF013827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HVS21191.1"
                     /translation="MPDNQPNYAGRPSLCRSCGALIGAGETTCHVCGAPLQQTPPAAL
                     PFHERYAMSYARAVLSRPYIFTIIFLIANFFVFMLMWQSSGMKSTVLWAGFPEGVLLD
                     YGAKKNYYIFFEHEYWRLVTPIFIHVNLPHVLINMYSLWIIGPWVEKLYGSAKFVVFW
                     VATGIVGVLASYLTVIPGSHPGLIGSFLIKTADEASAGASGALFGLVGVLFVFGIKYR
                     RELPEGFKRAFGTGMIPVIVLNLGIGFLGRGFIDNAAHMGGLLSGAALAAVVSYKRPG
                     KATSVTIAWRVLQIAAIIVVLACFAIAARHFQFTS"
BASE COUNT         1233 a         1430 c         1573 g         1165 t
ORIGIN      
        1 agaaacaaaa actctcgtct caagctcatg gtagaacact cctgccaagg catgttgccc
       61 tcctaaaaag gttttcatgc cattgtctat tgtgttaccc atgtcctcgg acacctgtta
      121 cctttgtctc cggtctatac actcccaaag ggagagggag aaaaaagcag aaagccggac
      181 aggaatacga agtcgagatc gtccgcgtca aggccggttt aagcagatta cccggcccca
      241 aaaaatcgag aaaactcgaa agtttgggct aaaaacggcg ccgccggcgc tctctgcgca
      301 gcatggcaga cgtgaacaaa ttctctgcgt tgagcacggt gatttcttcg ccgccgtatc
      361 ggactaagcc gagcgcaaga ccgtcggtat tctcacggct ttcgaccgac gcttcaatgt
      421 cggcgctcgc gatcgtaatc gtgtcgcggc agctttcagc agccagcgcg atctgttcgt
      481 cgccacgcaa agcgatcacg cacggcaaag tttgtggaag ggtggaaggc gtgtgcgtca
      541 agagcgcgac gggatccaag acggtcagca ttcggccgcg cacgcagacc actcccagga
      601 cggcgttcgg cgcgtgcggc aaaggcgcgg gcgttttcgc ctccgcagtg ccgtccacct
      661 gatcggcgac gactgcgaag agacgatcgc cggccacaaa aggaacgaga tcgagaagtt
      721 gaggatcagg cgaagttatt tcgttctcgc caatcccatc gtcggttgcg gctgagttaa
      781 gggggttcat catcatcaaa tcgcgcgccg cggtgaggat gcacgatgag aacacgggaa
      841 tgattcgctg gtcaattcgt ttggcgcgtt catagcgtca cgcctggccg cggccattcg
      901 ggtcaacgcg cgagcgtgtg gtaaattgca gttaagcaaa gacgcgtcgc gcagtgaaag
      961 gattatcgta atggacgagt ttgatctcta tcgcgccgag atgaatgaaa agctcttggg
     1021 cagcggccat ctcggcatca aaagattttt cgcgctggat acgcaggcct atgaagatgg
     1081 cgcgctcgac aagaagacca aagaacttat gggcctgact ggttcgatcg ttttgcgctg
     1141 cgacgattgc attacgtatc acatcaaaca gtgcgccgat tgcggcgtga cgcgcgaaca
     1201 attcctggac gcgttcaatg ttgcgctcgt cgtaggcgga tcgataacga taccgcatct
     1261 gcgacgggcg gctgagagat tggatcaggt actgggaagg tgacgaaatg agatcggatt
     1321 tgccagcgag agacgattgc ggctttgccg ctatccagtg cggaaaggct cggcctttcc
     1381 ggccccatgg gtgttttgat aaagaggctg tgcctcgact cggaggcgta gcctcctggt
     1441 tgccgtttgg attgcgagcc ggtaaggcaa agccttaccg cactgggctg cggcaaagcc
     1501 gcagggggac ggcctttcat tgtttcggtt tactcttatt tcttttgctg acaaattggt
     1561 catcgaatgt tcattctcgg tctcttcatt cacaggaagg tcttgaaatg cccgtacagg
     1621 aaggcgatcg aatccatgcg ccggagctgg atggtggccg cggctggctg aacacagaca
     1681 agcctttgtc gctctcgaaa ttgaaaggca aggtggtgct gctagacttt tggacttacg
     1741 gctgcatcaa ctgcatgcac atcattcccg atctgaagaa gctcgaaaag aaatatccaa
     1801 acgaactggt cgtgatcggc gtgcactccg ccaagtttga aaacgagaaa gacactgaga
     1861 acattcgccg catcattttg cgttacgaga tcgagcatcc gatcgttaac gatgcggatt
     1921 acgccgtttg gaaaagctat ggggtgaacg cttggcccac tcaggtcttg attgatcccg
     1981 caggctacat aatcggtagc ctttcaggcg aaggcaatta tgaagcgttc gataaggcga
     2041 tcggtcacac gattgccgag tttcgtaagc acggcaagct gaacgaagag ccgctgaaac
     2101 tcacactcga acgcgcaaaa gtgggcgatc tgccgctggc ttttccaggc aagattctgg
     2161 cggacgcaaa aggcggccga ctgtttatcg ccgattcaga tcacaatcga atcgtcatag
     2221 cgaagctcga cggcactttg atcgaaacga ttggcacggg cgcgcacggc gccgacgacg
     2281 gcgcgttcga tcgcgcaaca ttctttcggc cgcagggcat ggtgctggac ggcgattcgg
     2341 tctatgtcgc cgacactgag aatcatttga ttcgacgcgt ggatctgaag gtgcgcacgg
     2401 tgcagacaat cgccggcact ggacagcagt cgcacgacta tttccaaacc ggcccggcgc
     2461 gaacaatcgc gctgagttcg ccgtgggatt tgcagcttgt gggacgcacg ctctacatcg
     2521 cgatggccgg cccgcaccaa atctggcaac ttgatttgga caagaaccag gtttccacct
     2581 ttgccggatc gggacgcgag gcgcgtcatg atgggtcact gctcaaagct gctttcgcgc
     2641 aaccttctgg aataaccagc gatggcaaga atctctacac ggctgacagc gaagcaaaca
     2701 tcattcgtca gattgatctg gcaagcggcg aagtgcgcac gctggtcggc ggcgatcttt
     2761 tcgagtttgg cgataaggac ggccgtggcg acggcgtgcg tttgcagcac ccgctgggaa
     2821 tcttttcgct ggatggcaag ctgctgattg ccgacactta caatcacaag atcaaagaac
     2881 tcgacccgca ggcgcgcacg gtcaagacat ttctcggcac cgggaagccg ggtcaatcgg
     2941 atggcgctgc gccttctttc tacgaaccag gcgggctgag cgttgcgaac ggcaagctct
     3001 acgtcgcgga cacaaacaac cacgcgattc gcatcactga cttgaaaacg aaagaaacga
     3061 agacgctgca aattagaggc ttgcaacctc ccgcttcgaa tcaaaccgct gcgagcgctg
     3121 aagtcgcgcc gaacgcggaa gagatcaaac tggctccgca gaagatccga gccggagatg
     3181 cgaccatctt gatcaatgtc gagctgccca aaggctatca cctgaatccg accgcgccgc
     3241 agcgctacaa agtttcggtt gagaatggcg cgcagtcgat cacaatcgat cagcaaaacg
     3301 cgtctcgcac aactaaaggc ttgcagcttc cggttcgcat tccggtgcgc gcgtccgcag
     3361 gcgtcgccga aatacgagca tcgctcactt tcgtatactg tcgcgaagac aacacgggca
     3421 cgtgtcgcat caagacgctc gtctggcgcg cgccggtgga agttgtcacc gatgcaaatg
     3481 cggcaggcga gatccgattg agcagtaaag tgagtggcga ctgagcaacg cgtcgttctg
     3541 ctggagtttc tgtcgcaatt ccgtttcaag aactcgaaac acaaaactct gacgagcttt
     3601 cacttgctct gtcttcctgc gaccctgtaa tatcgtgctt ccctaattca tagacttgga
     3661 aggagtcacg tcatggtcga taaaccattt ctgactgaca tcaaaactct gcgcgaacgc
     3721 gcgcgtcgtc atattgagaa aggtgccgtc accgaagggt atagcgccga tcgcgaaacc
     3781 gtgaataagt tgttgaacga agcgctggcg acagagatcg tctgcgttct gcgttacaag
     3841 cggcattatt tcatggcgtc tggaattcac gctgaaggag tcgcagccga gtttctgcaa
     3901 cacgcaaacg acgaacaagg acacgcggat cagattgcgc aacgcatcgt gcagctcggt
     3961 ggagagccga acttttcgcc ggaaggattg ctgacgcgca gtcatgcgga atacgtcgaa
     4021 ggcgaaacgc tgactgacat gatcaaggaa gacctggtcg ctgagcgcat cgccatcgac
     4081 agttatcgcg acatgatcaa ctatgtcggc aacgacgatc cgacgacgcg ccgcatgatg
     4141 gaaggaatcc tggcgatgga agaagagcac gccgacgatc tggtgaacct tctgggagag
     4201 ctgggcaagt aagatcgtgc cgcgtcaaca cgccatcgtc taaacgcgtt tgcctgacaa
     4261 tcaaccaaac tacgccggcc gccccagtct ctgtcgaagt tgtggcgcgc tgattggcgc
     4321 gggcgaaacc acttgccacg tgtgcggcgc gccacttcag caaactccgc cggccgcatt
     4381 gccttttcac gagcgctatg cgatgagtta cgcgcgcgcg gtgctttcgc ggccttacat
     4441 cttcacgatc atttttctga tcgcgaactt tttcgtcttc atgttaatgt ggcaatcgag
     4501 tggaatgaag tccacggtgc tctgggccgg ctttcctgaa ggagtgttgc tcgattacgg
     4561 ggcgaagaag aattactaca ttttcttcga acacgagtac tggcgtctcg tcacgccgat
     4621 tttcattcac gtcaacttgc cgcacgttct gatcaatatg tacagccttt ggatcatcgg
     4681 tccgtgggtc gagaagcttt acggctcggc aaagttcgtc gtgttctggg tcgcaaccgg
     4741 aatcgtcggt gtgctggcaa gttacttgac cgtgattcct ggctcgcatc ccggattgat
     4801 tggaagcttt ctgatcaaaa ccgcggacga ggcttcggcg ggcgcatcgg gagcattgtt
     4861 cgggcttgtt ggtgtgcttt tcgtttttgg catcaagtat cgtcgcgagt tgcccgaagg
     4921 tttcaagcgc gcgtttggca ccggcatgat tccggtgatc gtgctaaacc tgggaattgg
     4981 atttctcggt cgcggcttta tcgataacgc ggcgcacatg ggcgggctct tatccggcgc
     5041 agcgctggcg gctgttgtga gctacaaacg ccccggcaag gccacgagcg tgacgatcgc
     5101 gtggcgtgtt ttgcagatcg cggcgatcat agtcgtcctg gcgtgctttg cgatagcggc
     5161 gcgacatttt caatttacga gttaggtgca gaacctctct cggtggcgag cgagcgatcg
     5221 aatctagccg gtcgtaccgc tctcggttct gtaccggttg attaaggaga ctgaaatgga
     5281 aatcaagaaa gttggcgtgc tgggctgcgg cttgatgggc gccggcattg cgcaaacagc
     5341 cgcaagcgca ggcttcgaaa ctacggtgcg cgaagtttca gaggagctga ttcagaaagg
     5401 c
//
LOCUS       DASZZE010000260         8539 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_189155, whole genome shotgun sequence.
ACCESSION   DASZZE010000260 DASZZE010000000
VERSION     DASZZE010000260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8539
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_189155"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..855
                     /locus_tag="VHD88_05050"
     CDS             <1..855
                     /locus_tag="VHD88_05050"
                     /inference="COORDINATES: protein motif:HMM:NF014027.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008612 - peptidyl-lysine modification to
                     peptidyl-hypusine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyhypusine synthase family protein"
                     /protein_id="HVS21192.1"
                     /translation="LIPAGMRRLLAYVIKNRFVDVLVLSGSLIFHDLHETLGRHHFQA
                     HPNMTDAELESAKINRMCDLLASEEEYHEAEEWVGGFASQLDQSRPYSTREFLHLLGR
                     ELAEIAAEDGVLTAAYKARVPVFCPGITDSGIAVGIAGARFEKKNNFQFDIVQDVLDL
                     AQIAIRARVSGVINLGGGITKSFMRQTEMSAKIFKQQIHGHKYAIQIAADAPHPGGRS
                     SAVAFDESLVYGKLGRGALTAYVNCDATIALPIIITALSQTAAKYMKGRRRPNFVFMG
                     RDLTIEVP"
     gene            1000..1905
                     /gene="speB"
                     /locus_tag="VHD88_05055"
     CDS             1000..1905
                     /gene="speB"
                     /locus_tag="VHD88_05055"
                     /EC_number="3.5.3.11"
                     /inference="COORDINATES: protein motif:HMM:TIGR01230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008783 - agmatinase activity [Evidence
                     IEA];
                     GO_process: GO:0008295 - spermidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="agmatinase"
                     /protein_id="HVS21193.1"
                     /translation="MTESQSLPVNFGGIAEEEFYSFENSRILVWPIAYEGTVSYGGGT
                     GRGAAAIIDASRNMELYDDETDAEVYRLGIHTLDESPSLDPPEQMMASLYDRAKELVS
                     SKKFIAMIGGEHSVSAPVIRAHAEKYSNLSVLQIDAHADLRDTYDGTPHSHASIMARV
                     VKDMKIPAVQCGIRSVSADEARVIDKLPTRIFWAKDIVGRSDWWDEAVDGLTDNVYLT
                     IDIDGLDPSLVSATGTPEPGGLSWYETIGLIRTLARKRDVVGMDLTEYSYVEGQNASA
                     FMCAKLIYKTLAFVFEKETERVRNV"
     gene            complement(2083..3345)
                     /locus_tag="VHD88_05060"
     CDS             complement(2083..3345)
                     /locus_tag="VHD88_05060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21194.1"
                     /translation="MKITNALLILIAALLIAPRAVAQQPKSAWLTEAERAKFETLRIA
                     GSEALFDLDYETARKNFKEMALAFPNYPAGPQFLADTLWTETLYQTRRLQSSLYDSDS
                     FYSTNEDKADPRVVDQFRTWTRQARLLAEARLKQSPHDPEALYFLGATEGLKASFEEA
                     VERRHFAALKDGSDAVDRHREVIKLDPSCRDAELSIGLYDYTVGSLALPLKIMAGVAG
                     FHGSKKRGLATLERVAKEGHWVHDEAKTLLIVLYTREKRYAEAATLARELGAKYPRNY
                     LYRLEEADALVSQAALEREANHATAGAAESEAFATFETLLRDKTLRDTTAGALDLIHF
                     KYGEALQTAGQYVRAAKEFLASADTSGAQAGLATMAHLYAAHSLDLAGKRSDAVTQYR
                     AVLARPNVYDAHDQAQTGLKEVFKRKLS"
     gene            complement(3365..4531)
                     /locus_tag="VHD88_05065"
     CDS             complement(3365..4531)
                     /locus_tag="VHD88_05065"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: protein motif:HMM:NF006050.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HVS21195.1"
                     /translation="MNVTHLECAACGLRHEARRLQNLCSQCGKPLLVRYDLNRAAAAL
                     TKESLGTRDPDLWRYREVLPVERDENVVSFGEGFTPLVRAPRLGAQLGLRELYIKDEG
                     QNPTQSFKARGMALAVSMAKELGAKKLAVPSAGNAAGALAAYAARAGLESFIFMPRDT
                     PRANVIECEQTGAHVTLMDGLITDCGAEVARRKDAEGWFDVSTLKEPYRIEGKKTMGY
                     ELAEQFDWELPDVIMYPTGGGTGLIGMWKAFDEMEQMGWIGSKRPRMVTVQAAGCAPI
                     VRAFEEGKRFADEFPNAHTTASGLRVPRAIGDFLILDALRESGGTALAVTDEELIAAT
                     KEIGAAEGIFCAPEGAACLPALRKLMAGGSVKPDERIVLFNTGSGVKYVESFSN"
     gene            4866..5348
                     /locus_tag="VHD88_05070"
     CDS             4866..5348
                     /locus_tag="VHD88_05070"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0016018 - cyclosporin A binding [Evidence
                     IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HVS21196.1"
                     /translation="MQNRTAVIQTNKGTIRFELLEQDAPKTTENFRLLAQQGFYDGVI
                     FHRVIKGFMIQGGDPTGTGRGGQSAWGGRFDDEINRSSEVYKRGYKAGTVAMANAGPN
                     TNGSQFFIIHVDYLLPPSYTIFGRVTEGQDIVNAIATAQRDGNDRPLSEIKMEKVTIE
                     "
     gene            complement(5349..6191)
                     /gene="thiD"
                     /locus_tag="VHD88_05075"
     CDS             complement(5349..6191)
                     /gene="thiD"
                     /locus_tag="VHD88_05075"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR00097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008902 - hydroxymethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0008972 - phosphomethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HVS21197.1"
                     /translation="MDIEQKLPGPVVMTIAGFDPSGGAGILADVKTLIAFGCLPAAAV
                     TSVTFQNIHGVKGAAHQTALTVREQVMSIVAESQVAAVKTGMLPTPEIVREVARLFRE
                     TKLPAPVVDPVLRSTSGYQLMQPDAIEVLLTELMPLARVITPNIPEAERLTDLRVEDE
                     EGMRKAAGKLREMGACAVFVKGGHLRQRSGVSGQGSERTGPIGQAIDVLDDEGCVTVF
                     RGEWIDAPPVRGTGCMLSSAIAACLGKGMALEDAVATAKEFAAGAIRNSELRIQHSQF
                     NTQN"
     gene            complement(6207..6851)
                     /locus_tag="VHD88_05080"
     CDS             complement(6207..6851)
                     /locus_tag="VHD88_05080"
                     /inference="COORDINATES: protein motif:HMM:NF014622.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HVS21198.1"
                     /translation="MSLNLPRPILYLITRGATTETTTSSSEEFQKILEQVSAAVAAGI
                     PLIQVREKRLTARVLFELTASVLAITRGSATRVLVNDRADIAAAAGADGVHLTTRSLD
                     ANVVCKTFGEKFLIGASTHSLAEAMAARDGGADFAVFGPVFETSTKTKYGAPLGVAAL
                     AEVSRASKPFPILGLGGISKENAPDCLRAGASGVAGISLFSDAATLRVVLANLE"
     gene            complement(6793..7188)
                     /locus_tag="VHD88_05085"
     CDS             complement(6793..7188)
                     /locus_tag="VHD88_05085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21199.1"
                     /translation="MSSRLSVIFYIILCLEIGIVLTVLPWVPHGWMGLSDWGNNYFLL
                     LAAHKTGYGVQRFVASGWVRGAVSGLGILNLAMGLWELLHFRQTVRALDAGLPSVESS
                     RQQSAKVVAADVAQSAQTDPLSDYPRRNH"
     gene            complement(7351..>8539)
                     /locus_tag="VHD88_05090"
     CDS             complement(7351..>8539)
                     /locus_tag="VHD88_05090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HVS21200.1"
                     /translation="QLTRLVPDQAHHLERLSQLGGAEEEVEFKTLPDFETATEHTAES
                     AAVGDQFVFDSQTLSSPVGEAEFEWNPVGDIADTRAESESESAGERGFTFETVVAEEL
                     ASGTEHVIADADADAQSRNAAIRAQELESVDFYIAQGYADIAIDTLDLLERQFGPHAD
                     IDVRRHQLQTRTERSKAATVDQKIVLDDGNAAPSQPEPEAPSPAIVATSDLKPANPQQ
                     PPPPHEGIHPSLAEVFEEYRVSAEKEADTAVNGDYETHYNLGLAYKEMDLFEEALEEF
                     QIAVAMVTPGDSTPRYLQCCNLLGHCFMRKGVPQLALKWFNKGFNAPGANEDERQALR
                     YELGDVYEQIGELDRAIDIFTEVYGINVSYRGVNERLRRLQAQTALRDDSAVMNQQAL
                     RPS"
BASE COUNT         1840 a         2544 c         2299 g         1856 t
ORIGIN      
        1 ttaattcccg ccggcatgcg acggctgctg gcgtacgtga tcaagaaccg gttcgttgat
       61 gtgctggtct tgtcgggctc tctgattttt cacgacttgc acgagacgct cggccgtcat
      121 cattttcagg ctcatcccaa catgactgat gccgagctgg agtcggcgaa gatcaatcgc
      181 atgtgtgacc tgctggccag cgaagaggaa tatcacgaag ccgaggagtg ggtcggaggg
      241 tttgcgagtc agttggatca gtcgcggcct tattcgacgc gagagtttct gcatctgctg
      301 ggtcgcgaac tggcagagat cgcggcggaa gacggcgtgc taacggccgc atacaaagcg
      361 cgcgtgcccg tgttctgtcc gggcatcact gacagcggca tcgcggttgg tattgccggc
      421 gcgcgattcg aaaagaaaaa caactttcag tttgatatcg tgcaggacgt cttggatttg
      481 gctcagattg cgatccgtgc gcgcgtttcc ggcgtcatca atctcggcgg cggaatcacg
      541 aagagcttca tgcgtcagac cgagatgtcg gcgaaaattt tcaaacaaca gattcatggg
      601 cacaagtacg cgattcaaat cgccgccgac gcgccgcatc ccggcggacg gtcgagtgcc
      661 gtcgcctttg acgagtcgtt ggtctatggc aagctcggtc gcggcgcgct cactgcttac
      721 gtgaactgcg acgccacgat tgccctgcca attatcatca cggcactatc gcagacggcc
      781 gcgaaataca tgaaaggccg ccgccgtccg aactttgttt tcatgggccg agacttgacg
      841 atcgaagtgc catgaaacca atcggccaca gatgaacacg gatctgcacg gataaggagc
      901 atattcctta tctcattcag tatcttatcc gtgtcatctg cgttaatctg tggctgaatt
      961 tggttggctt ctcgctctca cctcgctaaa ctgcgacgca tgaccgagtc gcagtccctt
     1021 cccgtgaact tcggcggcat cgccgaggaa gagttttaca gcttcgaaaa ctcgcgcatc
     1081 ctcgtctggc ccatcgccta cgaaggcacg gtttcctacg gtggcggcac gggccgtggc
     1141 gcggcggcaa tcatcgatgc ctcgcgcaac atggaactct acgacgacga gaccgacgcc
     1201 gaagtttaca gactcggcat tcacacgctc gatgaatcgc cgtcgctcga tccgcctgaa
     1261 cagatgatgg cttcgctcta cgatcgcgca aaggaattgg tctcaagcaa aaagttcatt
     1321 gcgatgatcg gtggcgagca ttcagtcagc gcgcccgtaa ttcgcgcgca cgccgagaag
     1381 tactcgaacc tttccgtttt gcaaatcgac gcgcatgcag acctgcgcga cacctacgac
     1441 ggcacgccgc attcgcacgc ttcgatcatg gcgcgcgtag tgaaagacat gaagattccg
     1501 gcagtgcagt gtggtattcg ttccgtttca gcagatgagg cgcgcgtgat tgataaactg
     1561 ccgacgcgaa tcttctgggc gaaagacatt gtcgggcgca gcgattggtg ggacgaagct
     1621 gttgacggcc taaccgacaa cgtttacctg acgatagata ttgatggcct cgatccttcc
     1681 ttggtttcgg caacgggcac gcccgaaccc ggcggactca gttggtacga aacgattgga
     1741 ttgatccgca cactcgctcg gaagcgcgat gtcgttggga tggacctgac cgagtactct
     1801 tacgtcgagg gtcagaacgc ttcggcgttt atgtgcgcga agttgattta caagacgctg
     1861 gcgtttgttt ttgagaagga aacggagcgg gtgagaaatg tttagaggag gtcagacttc
     1921 cgaaggctcc gttaggagcc agatgtttat agcaagcgat gctcttaatc gattagctcc
     1981 tttaggagcg aaatgttgat tacgctccta aaggagcttc agtaattcaa tgacttgaga
     2041 aactataaac attgcgcgcc gaatagcgct gcagcggaat actcaactga gtttcctctt
     2101 aaacacttcc ttcaaacctg tctgtgcctg gtcgtgcgca tcgtaaacat taggccgcgc
     2161 cagcaccgcg cgatattgcg tcacagcatc gctgcgtttg ccggcgagat ccagcgagtg
     2221 tgcggcataa agatgcgcca tcgtcgccaa tccggcctgc gcgccggaag tatcagccga
     2281 agcgagaaac tctttcgccg cgcggacgta ctgaccggcg gtctgcaacg cctcgccgta
     2341 tttgaaatga atcaagtcaa gcgcacccgc ggtcgtgtcg cgcagagtct tatcgcgcaa
     2401 cagagtttca aacgtcgcga acgcttcgct ttccgccgcg ccggccgtcg cgtggttcgc
     2461 ttcgcgttcc agcgccgcct gcgaaaccag cgcgtcagcc tcctccaaac gatagagata
     2521 gttgcgcgga tatttcgcgc cgagttctcg cgccagggtc gcagcctcag cgtatctttt
     2581 ttcgcgcgtg taaaggacga tcaaaagcgt cttcgcttcg tcatgcaccc agtgcccttc
     2641 tttggcaacg cgctcgagcg tagccagccc acgctttttc gatccgtgaa agccggcaac
     2701 tcccgccatg atttttagcg gcaacgccag cgagcccacc gtgtaatcgt acagaccgat
     2761 cgataactcg gcgtcgcgac aagaaggatc gagcttgatt acttcgcgat gccgatccac
     2821 ggcatccgat ccgtctttca acgccgcaaa gtgacggcgc tcgactgctt cctcaaacga
     2881 agccttcagg ccttcggtcg cgccgagaaa ataaagtgct tccgggtcat gcggactttg
     2941 tttcaaacgc gcctcggcaa gcagccgcgc ctggcgcgtc cacgtgcgaa actgatcgac
     3001 gactcgcggg tcggccttgt cttcgtttgt cgaatagaag gaatcgctgt cgtagagtga
     3061 agactgcaac cgccgcgttt gataaagagt ttcagtccag agcgtatcag ccaaaaactg
     3121 cgggccggca ggataattcg ggaatgccag cgccatttcc ttaaagttct tccgcgccgt
     3181 ttcgtagtcg agatcgaaca gcgcttccga gccggcgatg cgcaacgttt caaactttgc
     3241 gcgctcggct tcagtgagcc aggctgactt tggttgttga gcgaccgctc gaggggcaat
     3301 cagaagagcc gcaataagaa ttaagagtgc attcgtgatt ttcatggact gataactact
     3361 aagtctagtt tgaaaaactc tcgacatact ttactccact gccagtatta aagagcacga
     3421 tgcgctcatc gggtttcacc gatccgccgg ccatcaactt cctcagcgcc ggcaagcaag
     3481 ccgcgccttc gggcgcgcag aagattcctt cagccgcgcc tatttctttt gtcgcggcga
     3541 ttaactcttc gtccgtaaca gcgagcgctg ttccgccaga ctcgcgcagc gcgtcgagaa
     3601 tcaaaaaatc tccgatcgcg cgcggcacgc gcaggccgga agcggtggtg tgcgcatttg
     3661 gaaattcatc cgcgaaccgc ttaccttcct cgaacgctcg gacgataggc gcgcagcccg
     3721 cggcttgcac cgtcaccatg cgcggtcgct ttgatccgat ccaccccatc tgttccatct
     3781 cgtcaaacgc tttccacatg ccaatcaatc cggtgccgcc tccggttggg tacatgatca
     3841 cgtcaggcaa ttcccaatcg aattgttcgg ccagttcata gcccatcgtc ttcttgccct
     3901 cgatgcgata cggctccttc aaagtcgaga catcgaacca tccttccgca tctttgcggc
     3961 gggcgacctc cgcgccgcaa tcggtgatca agccatccat caacgtcaca tgcgcgccgg
     4021 tttgttcgca ttcgatcacg tttgctcgcg gcgtatcgcg cggcatgaag atgaatgatt
     4081 ccaatcccgc gcgcgctgca taagccgcca gcgcgccggc cgcgttaccc gccgatggca
     4141 ctgcaagttt cttcgcgccc aactctttgg ccatcgaaac tgccaacgcc atgccgcgcg
     4201 ctttgaaact ctgcgtcgga ttctgccctt cgtctttgat gtaaagctct cgcaaaccga
     4261 gttgcgcgcc gagccgcggt gcgcgcacga gcggagtgaa tccttcgcca aagctgacga
     4321 cgttctcgtc tcgttcgacc ggcaacactt cccgatagcg ccataaatcc ggatccctcg
     4381 tgcccaaact ttctttcgtt aacgccgccg ccgcgcggtt caagtcatag cgaaccaaca
     4441 gcggcttgcc gcattgcgaa cacaggttct gcaagcgtcg tgcctcgtgt ctgaggccgc
     4501 acgccgcgca ttcgagatga gtgacattca tggtcttctt tagtgattcc cctccaaaga
     4561 ttcgaaaggc ggtctgtcag ataacttgac caatcatcat agcttttgtg ggcgaatccg
     4621 tcaggtggag ccggaatctt gcgccggtaa atgcccctga agaattccga atcgttcctt
     4681 gctcccctct ccgttgggag aggggttagg ggtgagggct tacgacgcca acaaccccca
     4741 ccctaaccct cccccagaat gggggggaat cgagcctatc caacgagcgt cctccgcgtg
     4801 acctttgcgt actctgcggt tacgctatct gctcgcaatc aacaaccgct aaggggagac
     4861 actagatgca aaatcgaacc gcagtcattc aaaccaacaa aggcacgatc cgctttgaac
     4921 tactcgaaca agatgcgccg aagacgaccg aaaactttcg tctgctcgcc cagcaaggtt
     4981 tttacgacgg agtgattttt catcgagtaa tcaaaggatt catgattcaa ggcggcgatc
     5041 cgaccggcac gggccgcggc ggacagtcgg cgtggggcgg acgattcgac gacgaaatca
     5101 atcgatcgtc tgaagtttac aagcgcggtt acaaggcggg aactgtcgcg atggccaacg
     5161 ctggcccgaa caccaacggc tcgcagttct tcatcattca cgtcgattat cttctgccgc
     5221 cgagctacac gatctttggc cgcgtcactg aaggacagga catcgtcaac gcgatcgcca
     5281 ccgctcagag agacggcaac gaccgcccgc tatcggaaat taaaatggaa aaggtgacga
     5341 tcgaatgatc agttttgagt gttgaattgt gaatgttgaa ttctgagctc tgagttccga
     5401 atggcgccgg cagcgaattc tttcgccgtg gcgacggcat cttccagcgc cattcctttt
     5461 ccgaggcacg ccgcaatcgc cgacgataac atgcagcccg tgccgcgcac cggcggcgcg
     5521 tcgatccatt caccgcgaaa aactgtaacg catccttcgt catcgagcac gtcgatggct
     5581 tgacctatcg gccctgttct ttctgacccc tgaccactga cccctgacct ctgtcggaga
     5641 tgtccgcctt tcacaaacac cgcgcacgcg cccatctcgc gcaacttgcc tgcggctttg
     5701 cgcattcctt cttcgtcttc aacgcgcaag tctgttaagc gttcagcttc gggaatgttc
     5761 ggcgtgatca cgcgcgccag cggcatcaat tcagtcaaca agacttcaat cgcgtctggc
     5821 tgcatcaact ggtaaccaga agtcgatcgc aaaactggat cgacgaccgg cgcgggcagt
     5881 tttgtttcgc gaaagagccg cgcaacttcg cgaacaatct caggcgttgg tagcatcccc
     5941 gttttcaccg ccgcgacttg cgactcggcc acgattgaca tcacctgttc gcgcaccgtg
     6001 agtgcggtct gatgcgctgc gcccttgacg ccgtgaatgt tttgaaacgt taccgacgtg
     6061 acggccgcgg cggggaggca accaaaggcg atcagcgttt tgacgtcggc aagaatccca
     6121 gcaccgcccg acggatcgaa gccggcgatg gtcatgacaa ccggcccagg aagtttctgt
     6181 tcgatatcca tctgcggctc aatcgatcac tctagattgg cgagcacaac tctcagtgtc
     6241 gccgcatcac taaacaagct aatgccggcg actccgctcg cgccagcgcg aagacaatca
     6301 ggcgcgttct ctttcgaaat cccaccaagc ccgagaatcg gaaacggttt tgacgcgcgc
     6361 gaaacttcgg cgagcgccgc cacaccaagc ggtgctccat atttcgtttt cgtagaggtc
     6421 tcgaacaccg gaccaaagac cgcgaagtcc gctccaccat cgcgcgccgc catagcttcg
     6481 gcgagcgaat gcgtcgaagc gccaatcaga aacttctcgc cgaaagtttt gcaaacaaca
     6541 ttcgcatcaa gcgaacgcgt agtcagatgc actccgtcgg cgccggcggc cgcggcgatg
     6601 tcagcgcgat cgttaactaa gactcgcgtc gcgcttccac gcgtgatcgc taagacgctc
     6661 gccgtaagct cgaagagcac ccgcgcagtc agccgttttt ctcttacctg aatcagtgga
     6721 atgccggcag cgacggccgc ggagacttgc tcaagaattt tctgaaactc ttcgctcgac
     6781 gaggtagtcg tctcagtggt tgcgccgcgg gtaatcagat aaaggatcgg tctgggcaga
     6841 ttgagcgaca tcggcggcaa ctactttcgc ggactgttgc cgagagcttt ccacagaagg
     6901 caggcctgcg tccagcgcgc gcactgtctg gcgaaaatga agcaactccc acaagcccat
     6961 cgccagattg agaatgccaa gccccgaaac tgcgccgcgc acccaacctg acgctacaaa
     7021 gcgttgcact ccatagccag tcttgtgcgc cgccaaaagc agaaagtaat tgttgcccca
     7081 gtcgctcagc cccatccaac cgtgcggcac ccagggcaaa accgtaagca cgatgcctat
     7141 ctcaaggcag agaatgatgt agaagatgac cgagagccgc gaagacattt ccgatccctc
     7201 ttgaacctgc gaagctgctt attgtacacg aggactggcc agatcagtgc ggcgagatag
     7261 tagcgtactc actcgactgt cggcactctc gccatttcgg agcgccggct gacgtgtcga
     7321 tactcgagtc ttaagctatc cgcgactgct tcacgacggc cgcagcgctt gctgattcat
     7381 cactgcgcta tcgtctcgca gcgctgtttg cgcctggagc cgtcgcaatc gttcgttaac
     7441 tccgcgatat gaaacgttga ttccgtaaac ttcagtaaaa atatctatgg cgcgatccag
     7501 ctcgccgatt tgctcgtaaa cgtcgccgag ttcgtaacgg agcgcctgac gttcgtcttc
     7561 attcgcaccc ggagcattga atcctttatt gaaccacttc aacgccaact gcggaacgcc
     7621 tttgcgcatg aaacaatgtc ccagcagatt gcagcattgc aagtagcgcg gcgtgctgtc
     7681 gcccggcgta accatcgcga ctgcgatctg aaactcttcc agagcttctt cgaacaggtc
     7741 catctctttg taagccagac ccagattgta gtgagtttcg tagtcaccat taaccgcggt
     7801 atcagcttct ttttcagccg acacgcgata ctcttcaaag acctcggcca aacttggatg
     7861 gattccctcg tgcggcggag gaggttgttg agggttcgcg ggtttgagat cgctcgtcgc
     7921 tacaatcgct ggtgatggag cctcaggttc aggctgcgac ggagctgcat ttccatcgtc
     7981 cagcactatc ttttgatcaa cggtagccgc cttgctcctc tctgtccggg tttgaagttg
     8041 atgacgacga acatcgatgt ccgcatgcgg cccaaactgc cgctccaata ggtccagcgt
     8101 gtcgattgcg atgtccgcgt aaccctgcgc gatgtagaaa tccacgctct cgagttcctg
     8161 cgcgcgaatg gcagcgttgc gcgactgcgc gtcggcatcc gcatccgcga tcacgtgctc
     8221 cgtgcccgat gccaattcct cagcgacgac ggtttcgaaa gtgaagcctc gctcaccagc
     8281 cgactcactc tcggattctg cgcgggtgtc agcgatgtcg ccaaccgggt tccattcaaa
     8341 ctcagcctcg ccgaccggcg atgagagcgt ctgcgaatca aaaacgaact gatcgccgac
     8401 ggcagcactt tccgctgtgt gctcggtcgc cgtttcaaag tcaggcaaag ttttgaactc
     8461 aacttcttct tcggcgccac caagttggct gaggcgctcg aggtgatgcg cctgatcggg
     8521 caccagccgc gtcaactgg
//
LOCUS       DASZZE010000261         1598 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_40887, whole genome shotgun sequence.
ACCESSION   DASZZE010000261 DASZZE010000000
VERSION     DASZZE010000261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1598
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40887"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1258
                     /gene="gcvPB"
                     /locus_tag="VHD88_05095"
     CDS             <1..1258
                     /gene="gcvPB"
                     /locus_tag="VHD88_05095"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: protein motif:HMM:NF003346.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004375 - glycine dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0006546 - glycine catabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase
                     subunit GcvPB"
                     /protein_id="HVS21201.1"
                     /translation="FANLHPLACEQEAQGALRVIYELQQHLAEITGVPGISLQPAAGA
                     HGEMTGIMIIRAFIDARDGKEASAKRRTMLIPDSAHGTNPASAHLSGFTVKTIRSTAE
                     GLTDLDHLRELCAHGDVAGLMLTNPNTLGLFEKNIQEICRIVHDAGGLVYMDGANMNA
                     LVGVARPGDMGVDVIHLNLHKTFSTPHGGGGPGSGPVCCTKELESFLPVPRVVVRTRS
                     GSDGANDGTGDSTRDSTVFKLDFDYPQSIGRVKAFLGNYGMMLRALSYILTHGCDGLR
                     EATEAAVLNARYIAHGLISDYEKPFEAAPMHEVVFTDKRQARKGVHTLDIAKRLIDYG
                     FHPMTIYFPLIVSGAMLIEPTESVGRQELDQFIEAMRSIAREVIEDPELVLNAPHTTR
                     IGRLDEAAAARKPVLRWKPTQAASAS"
     gene            1299..>1598
                     /locus_tag="VHD88_05100"
     CDS             1299..>1598
                     /locus_tag="VHD88_05100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21202.1"
                     /translation="MAAQQPWTRIQIETSFFPLSFFLYLCTPTIVIDGVACQRQWGTH
                     SFPLAPGMHNVRIFFRYLFMDTCGANSINVVVQPNCIHRIKYEMPPWMFSQGRSEN"
BASE COUNT          359 a          451 c          453 g          335 t
ORIGIN      
        1 ctttgcgaat cttcatccgc tggcttgcga acaggaagcg caaggcgcgt tgcgagttat
       61 ctatgagttg caacagcatc tcgctgaaat caccggcgtg cccggcattt cattgcagcc
      121 ggcggcgggc gcgcatggcg agatgacggg catcatgatc attcgcgcgt tcatcgacgc
      181 gcgcgacggc aaggaagcgt cagcgaaacg acgcacgatg ctgattcccg attccgcgca
      241 tggaacgaat ccagcttcgg cgcatctgtc cggcttcacc gtcaagacga ttcgctcaac
      301 tgccgaagga ttgactgact tggatcattt gcgcgagttg tgcgcgcacg gcgacgtggc
      361 cggcttgatg ttgacgaatc caaacacgct cggactgttt gaaaaaaaca tccaggagat
      421 ttgtcgcatc gttcacgacg ccggcggatt ggtttacatg gacggcgcga acatgaacgc
      481 gctggttggg gtggcgcggc caggcgacat gggcgtcgat gtgatccacc tgaacctgca
      541 taaaactttt tcgactccgc acggcggcgg tggcccgggt tcaggcccgg tttgctgcac
      601 gaaagaactt gaatcattct tgccggtgcc gcgagttgtt gtcagaaccc ggagcggtag
      661 cgacggggca aacgatggca ccggagactc aacccgcgac tccacagtct tcaagctcga
      721 tttcgattac ccgcaatcga ttggtcgcgt caaagccttt ctgggcaact atggaatgat
      781 gctgcgcgcg ctctcgtaca ttctcacgca cggttgcgac ggcttgcgcg aagcgacaga
      841 agcagccgtg ctgaacgcgc gctacatcgc acacggcctt atctcggatt atgagaagcc
      901 attcgaagca gcgccgatgc acgaagttgt tttcaccgac aagcgccagg cgcgcaaagg
      961 cgtccacact ctggacatcg ccaagcgcct gatcgattac ggcttccatc ccatgacgat
     1021 ctattttcct ttgattgttt cgggagcgat gctgattgaa cccacagaat cagtcggccg
     1081 gcaggaactc gatcaattca tcgaagcgat gcgttcaatc gcgcgcgaag tcatcgaaga
     1141 tcccgaactg gttctgaacg cgccacacac gacgcggatc ggccgtctcg acgaagccgc
     1201 ggctgcacgc aagccggtgc tgcgctggaa accgacccag gctgcgagcg catcgtgaat
     1261 aaatcacgtg aacgctagca agcaaaggag aacaaccgat ggccgcgcaa cagccctgga
     1321 cacgcattca gatagaaacg agcttttttc cgctatcatt tttcctttat ctttgcacgc
     1381 ccacaattgt gatcgacggc gtcgcgtgtc aaagacagtg gggaactcat tcatttcctt
     1441 tagcgccggg aatgcacaac gtcaggattt tcttccggta cttgtttatg gatacgtgcg
     1501 gggcgaattc catcaatgtg gtggtccagc ccaactgtat tcaccgaatc aagtacgaga
     1561 tgccgccgtg gatgttctcg caagggcgat cagagaac
//
LOCUS       DASZZE010000262         2697 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_25624, whole genome shotgun sequence.
ACCESSION   DASZZE010000262 DASZZE010000000
VERSION     DASZZE010000262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2697)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2697)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2697
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25624"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..648)
                     /locus_tag="VHD88_05105"
     CDS             complement(<1..648)
                     /locus_tag="VHD88_05105"
                     /inference="COORDINATES: protein motif:HMM:NF013183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence/damage-inducible protein A"
                     /protein_id="HVS21203.1"
                     /translation="MLTAEIIAIGSELLAPDRTDTNSLWLTEQLNRLGIDVKLKTIVG
                     DDVARLEELIKDAVRRSRVVITTGGLGPTEDDITRKVVARALGRRLALDENVLAEIRA
                     RFQSFGVTMPERNSRQAMVIEGAEVLPNPNGTAPGLYLEHEGCAIALLPGPPREMKPM
                     FENHVQARLEKLAGDLRFARRVLRVSGMGESAVDEKIAPVYSQYENPQTTILFNSG"
     gene            complement(711..1778)
                     /locus_tag="VHD88_05110"
     CDS             complement(711..1778)
                     /locus_tag="VHD88_05110"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: protein motif:HMM:NF002898.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HVS21204.1"
                     /translation="MSTSTKRIAVIPGDGIGPEVIREAVGVLDRIRETHGVEFHLTEF
                     DWGVEKFLREGVTLPEGALEMLARDFDAILGGAFGDPRVPANKHAEDILLGMRRGLDL
                     YINLRPVKLLHERLTPLRNRKPEQIDFVVFRENTEGAYCGAGGFMKKGTADEIATQEE
                     LNTRRGVERIIVAAFEYARTHGCERVTMADKSNVQRFGGDLWQRVFKEVAARYPEIEA
                     THQYVDAMAMFMVLDPSQYEVIVTNNLFGDILTDLGAALQGGLGLAASGNIHPGRVSL
                     FEPVHGSAPPLAGKNVANPVGAVLTAAMMLDYLGHKEASAAIERAVQGAIKDGATTRD
                     LGGSLSTEAAGTAICDRIESS"
     gene            complement(1964..>2697)
                     /locus_tag="VHD88_05115"
     CDS             complement(1964..>2697)
                     /locus_tag="VHD88_05115"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="M28 family metallopeptidase"
                     /protein_id="HVS21205.1"
                     /translation="EFHPVTPVGDRKMVNVTAELPGESSDVIIISSHYDTKLIREFKF
                     VGANDAGSSTGELLELARVMAANKTKPKLTYWFVFFDGEEALCFDWEECKNPNPSDPS
                     AKLPDNTYGSRRFVAQLTEKNELKRVRAMILFDLMGYKNLRLGRDDMSTGWLVDAIWQ
                     TAKQLGYGSIFVDGREGVGGDDHEPFLRAGIDALDIIQLSSYQYWHTREDTLDKVSAK
                     SLKIVGDVVLTSLPQIEERLSKSSK"
BASE COUNT          578 a          811 c          718 g          590 t
ORIGIN      
        1 gccgctgttg aagagaatcg ttgtctgcgg attctcgtac tgcgaataga cgggcgcgat
       61 cttttcatca actgccgatt cgcccatgcc cgagacgcgc agcacgcggc gcgcaaaacg
      121 caggtcgccg gccagcttct ccagacgcgc ctgcacgtgg ttctcgaaca tcggtttcat
      181 ctcgcgcggc gggcccggca gtagcgcaat cgcacagcct tcgtgctcga gataaagacc
      241 gggcgccgtg ccgttcggat ttggcaggac ttccgcgcct tcgatcacca tcgcttgccg
      301 agagtttcgc tcgggcatcg tcacgccgaa actctgaaaa cgcgcgcgaa tttcggcgag
      361 gacgttttcg tcgagagcta gccgccgccc gagcgcccgc gccacgactt tgcgcgtgat
      421 gtcgtcttca gttgggccga gtcccccagt agtaatgact acccgcgaac gccttaccgc
      481 gtctttgatc agctcttcga gccgcgcaac gtcgtcaccg acgattgtct tgagcttgac
      541 gtcgatgccc aggcggttga gttgttcggt gagccagaga ctgttggtgt cggtgcgatc
      601 tggtgcgagg agttcggaac caatggcgat gatttcagca gtgagcatgg acgatgatta
      661 ttaccacaga ggacacagag gaagaacccc gcacagctag ccaaatgaaa tcaactcgat
      721 tcaattcgat cgcaaatcgc cgtgccggcc gcttcggtcg aaagcgagcc gccgagatcg
      781 cgcgttgttg cgccatcttt gattgcgccc tggaccgctc tttcaatggc ggcgctcgct
      841 tctttatgac ccagataatc cagcatcatg gccgcagtca gaacagcgcc gaccggattt
      901 gcgacattct ttcccgcgag cggcggcgcg ctgccatgca cgggctcaaa caacgaaacg
      961 cggccgggat gaatgttgcc tgaagccgcc aggccaagcc cgccctgcaa cgccgcgccg
     1021 agatccgtca ggatgtcgcc aaacagattg ttcgtcacga tcacttcata ctgcgacgga
     1081 tcgagcacca tgaacatcgc catcgcatcg acgtattgat gagtcgcctc gatctctgga
     1141 taacgcgcgg cgacttcttt gaaaacccgc tgccacaaat cgccgccgaa gcgttgcacg
     1201 tttgatttgt ccgccatcgt cactcgctcg caaccgtgcg tgcgcgcata ttcgaacgcg
     1261 gcaacgatga tgcgttccac gccgcgacga gtgttcagct cttcctgcgt cgcgatctcg
     1321 tcggcagttc ccttcttcat gaaaccgccg gcgccgcagt acgcaccttc agtgttttcg
     1381 cgaaagacta cgaagtcgat ctgctcaggc ttgcgatttc gaagaggagt taatcgctcg
     1441 tgaagcaatt tgacgggacg gagattgatg tagagatcga ggccacgccg catgccaagc
     1501 agaatgtctt cggcgtgctt gttcgcaggc acgcgcggat cgccgaacgc tccgcccaga
     1561 atcgcatcaa agtcgcgcgc gagcatttcc aacgcgcctt ccggaagcgt gacgccttcg
     1621 cgcaaaaact tttctacgcc ccaatcgaat tcagttaggt ggaattcaac gccgtgtgtt
     1681 tcgcgaatac ggtccagaac gcctacagct tcgcgaataa cttcagggcc gatgccgtcg
     1741 ccgggaatga cggcaatgcg ttttgttgaa gtggacatcc gaacgtattg cggttgtgcc
     1801 gcttgatgtg cggaaaggct ttgcctttcc gatcctgcta atcaaattga ttctcgcttt
     1861 ggcgagggct ccggcctcgc aaagcgaatg gataagaaga agcccttaac ggaaagccga
     1921 aggctttccg cacagtgggc ggcatagccg taaaccgcaa atcctacttg gaactcttac
     1981 tcagacgctc ttcaatttgc ggcaagctcg tcaaaaccac gtcgccgacg atcttcaagc
     2041 tcttcgccga aaccttatcg agcgtgtctt ctcttgtgtg ccagtattga tatgaactca
     2101 attgaataat gtcgagagca tcgatgcccg cgcgcagaaa cggctcatga tcgtcgccgc
     2161 ccacgccttc gcgcccatcg acaaaaatcg aaccgtaacc aagctgtttc gcggtttgcc
     2221 agatagcatc aaccagccag cccgtgctca tatcgtcgcg gcccagccgg agattcttgt
     2281 aacccatcaa gtcaaacaga atcatcgcgc gcacgcgctt caactcgttc ttttccgtaa
     2341 gctgagctac aaatcggcgg ctgccgtaag tattgtccgg caactttgcg ctcgggtcag
     2401 acggattcgg gttcttgcat tcttcccaat caaagcacaa agcttcttcg ccatcgaaaa
     2461 acacgaacca gtaagtcaac ttcggtttag tcttgttcgc ggccatcacg cgcgcgagtt
     2521 ccagcagttc gccggtcgaa gaaccggcat cgttcgcgcc cacgaacttg aattccctga
     2581 tcagtttcgt gtcgtagtga cttgagataa tgatcacatc actcgattcg cctgggagtt
     2641 cagccgtgac gttcaccatc tttcgatcac cgaccggcgt caccggatga aactcat
//
LOCUS       DASZZE010000263         2304 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_136611, whole genome shotgun sequence.
ACCESSION   DASZZE010000263 DASZZE010000000
VERSION     DASZZE010000263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2304)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2304)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2304
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136611"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1968)
                     /locus_tag="VHD88_05120"
     CDS             complement(<1..1968)
                     /locus_tag="VHD88_05120"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HVS21206.1"
                     /translation="MSLLEALQLIGYSLGALLPLWMGYLLFRQRLGLVPIQRLLLGLG
                     LCMAGWHASNLIITLRALLGLNVAQWTGVLRVADSIAVVSITVCYSLLLHVHIHLWAG
                     AQSRTLTRTERIRIYLSYLPCLFLIAAIPKIWLESYQPMLARLSAFVLPFALWIAYSL
                     AFVAVTELLVARRSPSRSERLILRTLAFSFIGIAVLVLAALGFGLGKGSVAGLYLNTF
                     ANLGSLLPSALLAYYIYRYRYLELIIKESLIVATFAAVVLAVYVYGIRRIGDWANARY
                     GLRAGVVEAILILALTLIAAPLRGWLEKRFRALFERETALYRDVVTRIGSHAGQYRSL
                     SDLLSFIESETARALSLRRVKIVLGDSNLTERDFELRYPLSREGKSVGAMLIEASPNA
                     LTPDARAVLEVLAGQVAIAIEDWRLVEENMRLERRVADGERLAALGQMAATVAHEVKN
                     PLSAIKSIAQVMSEDEAVTSQHARDLSLIVGETDRLSKSVTQLLSFASKQPPAAPPSR
                     ADELVRSVAGLFRADAEERNLALQCSATTNAELDGVQTAAVRDALSNFVLNALQASAA
                     GGKVAIESFLDGDEIVFAVIDSGPGVAAEMRARIWEPFFTTKQRGTGLGLAIVRKRME
                     EAGGSARLGPSHNGEGARFELRLPLISARSGH"
BASE COUNT          557 a          700 c          630 g          417 t
ORIGIN      
        1 gtgccccgat ctagcgctaa tcaacggcaa gcgcaactca aatctcgcgc cttcaccgtt
       61 gtgcgatggg ccaagccgag ccgaaccgcc ggcttcttcc atacgcttgc ggacaatcgc
      121 caacccgaga cctgtgccgc gttgtttcgt cgtaaagaat ggctcccaaa ttcgcgcgcg
      181 catctccgcg gcaacgcccg gtccactatc aattacggcg aaaacaattt cgtctccatc
      241 cagaaacgat tcaatcgcga ccttgccgcc ggcagcactg gcttgcaaag cattcaagac
      301 gaagttcgac agcgcgtcac gaactgcggc ggtctgcact ccatcaagtt ccgcgtttgt
      361 ggtggccgag cattgcagcg ccaggttgcg ttcctcggcg tcagcgcgaa acaggccagc
      421 gacgctgcgc accaactcgt ccgcgcggct aggcggtgcg gcgggaggtt gtttgctggc
      481 gaagctgagc aactgcgtaa cgctcttgct caagcgatca gtttcgccga caatcaaact
      541 caggtcgcga gcatgctgag atgtgacggc ctcgtcctcg ctcatcacct gagcgattga
      601 cttgatggcc gaaagcggat tcttcacttc atgcgccacc gtcgcggcca tctggcccag
      661 ggccgcaagc cgctcgccgt cggcaaccct ccgttccaaa cgcatgttct cttcaaccag
      721 ccgccagtct tcgatcgcga ttgcgacttg accagcgagc acttccagca ccgcgcgcgc
      781 atcgggggtc aatgcatttg gcgaagcttc aatcagcatc gcgccgacgc tcttgccttc
      841 gcgactcagc ggataccgaa gctcgaaatc acgctccgtc aaattggaat cacccagcac
      901 aatcttcacg cggcgcagcg acaaggcgcg ggcggtttcc gactcaatga agctaagtaa
      961 atccgaaagg ctacgatatt gccccgcgtg cgagccgata cgtgtgacga catctcggta
     1021 aagcgcagtc tcgcgctcga acagtgcacg gaaacgtttt tccaaccagc cgcgcaaggg
     1081 agcggcgatg agcgtcagcg cgagaatcag aatcgcttcc actacgccgg cacgcagacc
     1141 atagcgcgcg ttggcccagt cgccgatgcg ccgaattccg taaacataaa cggcgagcac
     1201 gaccgccgcg aacgtcgcca caatcaaact ctctttgatg atcagttcga gatagcgata
     1261 acgatagatg taataagcga gcagggccga cggcagcagc gaccccagat tagcgaacgt
     1321 gttgagatac agaccggcca cgcttccttt gcccagcccg aatcccagcg ccgccaaaac
     1381 gagcacggca atgccgatga atgaaaacgc cagcgtgcgc agaatcagtc gttcgctgcg
     1441 cgacggcgag cgacgcgcta ctaacagttc agtcaccgcg acgaatgcca gcgagtaagc
     1501 gatccagagc gcgaacggca gcacgaaagc cgaaagtctc gcgagcatcg gctggtaact
     1561 ttccagccaa atctttggaa tggcggcgat gagaaacagg caaggaagat acgaaagata
     1621 aattcggatt ctttcggtgc gagtgagcgt gcgcgactgt gcgccggccc agagatgtat
     1681 gtgcacgtgc aggagcagcg aatagcagac ggtgatgctg acgaccgcga tcgaatccgc
     1741 aactcgcagt acgccggtcc actgcgccac gttaagtcct agcaatgcgc gcaacgtgat
     1801 gatcagattg ctcgcgtgcc agccggccat gcacagcccc agaccaagca acaaacgctg
     1861 aatcggcacg agcccgagtc gctgcctgaa cagcaaatac cccatccaca gcggcagcaa
     1921 cgcgccgagg ctgtagccga taagttgaag ggcttcgaga agggacatga aagcgagcgt
     1981 agctctattc ctaaactaaa cagaatcgtg atggtgtagt atcgcagctt tagccatttc
     2041 gtcgctatga actggccttc aatacaactt cgacgtcaca gaggcgtggt tcaagatgat
     2101 aggcagcctc gattttagtt tcatccccgc aggggatgaa ttcaatagcc gtgggcagcg
     2161 ccaacggatc gacgtcaaac cagaaccccg accctgaaag ggtcgaacaa tcagttccac
     2221 aagtaccgct cgtcgtattc gataccgtac tgatcgagga agtcaataag ctcttcctga
     2281 aaagatcgct ggcgatggtg ctcc
//
LOCUS       DASZZE010000264         2596 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_299120, whole genome shotgun sequence.
ACCESSION   DASZZE010000264 DASZZE010000000
VERSION     DASZZE010000264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2596)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2596)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2596
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299120"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..644)
                     /locus_tag="VHD88_05125"
     CDS             complement(<1..644)
                     /locus_tag="VHD88_05125"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HVS21207.1"
                     /translation="MQTVTVVGAGFSGLVTAYYLVKEGINVRVVEKSSRVGGLLQTIR
                     TEHGLVETAANGIRNSARLEAMCTDIGVRLQTTRREGRARFMHRGKPRQWPLTPSDSL
                     ALTLKLAANATRLRPRQFETIAGWGQRVIGRGATEYLLAPALGGIYAGDPKTLSASLI
                     LRRASLPSELQVKPGPNPKHRGTVAPTEGMQQLIDGLFEYLERSGVDFIFDHVG"
     gene            complement(663..2006)
                     /gene="hemN"
                     /locus_tag="VHD88_05130"
     CDS             complement(663..2006)
                     /gene="hemN"
                     /locus_tag="VHD88_05130"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR00538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051989 - coproporphyrinogen dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HVS21208.1"
                     /translation="MTDLFAKYDVPAPRYTSYPTVPFWSNSPTTAQWLNELESACEDV
                     AMTWSLYLHLPFCETLCTFCACNTVITRNHEREDGYVKLLLREWELYTDRVPALCQRP
                     LRQLQLGGGTPTFFSSENLRRILEPILSDTHRNNDEFEASIEVDPRHTTREQLEALRS
                     LGFNRISLGVQDFDPEVQRLVNREQPLEITKSITDAARELGYGSVNYDLIYGLPRQTP
                     ASFQQTVEQTIELLPDRIALYSFALVPWIKPAQRSYKDEDLPRAGEKRELYELAREML
                     EGAGYVEIGMDHFALPKDGLAQAQRAGTLHRNFMGYAERRTRVLLGLGVSAISETPGC
                     FHQNEKAFPVYERKVQQGEIPTFRGHLLSDQDRRLREQILTFMTRFEVELLPEQSADA
                     KVFLDSLISDGLVEVSAQKIVLTERGRPFLRNACMFFDERLRQQQPQPRVFSQAL"
     gene            complement(2003..>2596)
                     /locus_tag="VHD88_05135"
     CDS             complement(2003..>2596)
                     /locus_tag="VHD88_05135"
                     /inference="COORDINATES: protein motif:HMM:NF013381.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase family protein"
                     /protein_id="HVS21209.1"
                     /translation="GPWTLFAYAVEGSHSGTLAPSKTLLHLFPKFCERLVPLLIRNIE
                     LQLRSGAELVMIFDTAAGELSPHVFAAEVIPQLELLAQRFPSRLGYYSKGTQRDHLDH
                     SVFTDGDFAGIGVDYRWDLREALDLFTRGFVQGNFDPALLLCEHGELKKRLRDYLKPL
                     TNHTRDGWVCGLGHGVLPGTPEENVRLFVSTVREVLS"
BASE COUNT          584 a          732 c          720 g          560 t
ORIGIN      
        1 tttccaacat gatcgaaaat aaaatcgaca ccggatcgct caagatactc gaagagccca
       61 tcgataagtt gctgcattcc ttcagtaggc gcaacggtgc cgcgatgttt cggattcggt
      121 cccggcttaa cctgcaactc cgagggaagc gatgcgcgac gaagaatcag actggcactg
      181 agtgttttcg gatcgcccgc gtaaattcca ccgagcgcag gagcgagtag atattcagtc
      241 gcaccgcgac cgattactct ttgtccccag ccggcaatcg tttcgaattg gcgcggtcgc
      301 aacctcgtgg cgttcgccgc caacttgaga gtaagagcga gcgagtcaga gggcgtgagc
      361 ggccactggc gcggttttcc gcgatgcatg aatcgcgccc ttccctctcg ccgcgtcgtt
      421 tgcagccgta ctccaatgtc cgtgcacatc gcttccagcc gcgctgaatt ccgaataccg
      481 ttggcggcgg tttccaccag gccatgctcg gtgcgaatcg tttgcagcaa tccgccaacg
      541 cgtgaactct tctcgacaac acggacgttg attccctctt tgacgagata gtacgctgtc
      601 accaaaccgg aaaaccctgc gccgacgact gtgacggttt gcatctcagg gatgtgtttg
      661 aattaaagcg cttgcgagaa aacgcgcggc tgtggttgtt gctgacgcaa tcgctcgtcg
      721 aaaaacatgc aagcgttgcg caggaatgga cgcccgcgtt cggtcagaac aattttttgc
      781 gcgctcactt cgacgaggcc atcactgatc agcgaatcga gaaacacctt cgcgtctgcg
      841 gactgttcgg gcagtaactc aacttcgaag cgagtcatga acgtgagaat ctgttcgcgc
      901 aagcggcggt cctgatcaga aagcagatgg ccgcgaaacg tcggaatttc gccctgctgg
      961 actttgcgtt cataaactgg aaacgccttt tcgttttgat gaaagcagcc gggcgtttcc
     1021 gaaatcgcgc tgacgccgag tccaagcaac acgcgcgtgc ggcgctcggc ataacccatg
     1081 aaattgcgat gcagagtgcc cgcgcgctgc gcttgtgcca gcccatcctt aggcaatgcg
     1141 aagtggtcca ttccgatctc aacgtaaccc gcgccttcca gcatttcgcg cgcgagttcg
     1201 tatagctctc gcttctcgcc ggcgcgcggc aaatcttcat ctttgtagct gcgctgcgcg
     1261 ggtttgatcc agggcacgag tgcaaaactg taaagcgcaa tgcgatcagg cagaagttcg
     1321 atggtttgtt cgactgtttg ctgaaagctc gctggagttt gtcgcggcag tccgtaaatc
     1381 aaatcatagt tgactgagcc atagcccaac tctcgcgccg catcagtgat cgattttgtg
     1441 atttcaagcg gctgctcacg attgaccagg cgctgcactt cgggatcgaa atcctgaacg
     1501 ccgagagaga tgcgattgaa cccgagagag cgcagcgctt cgagttgctc gcgcgttgtg
     1561 tgacgcggat cgacttcaat cgaggcttcg aactcatcat tgtttcggtg cgtgtcagag
     1621 aggatcggtt caagaattcg ccgcaggttc tctgacgaga agaacgtcgg cgtgccgccg
     1681 ccaagttgca actgtcgcaa cgggcgctgg cagagcgctg gcactcgatc cgtgtagagt
     1741 tcccactcgc gcagcaacag cttgacgtaa ccatcttcgc gttcgtgatt gcgcgtgatg
     1801 acggtgttgc acgcgcagaa ggtgcaaagc gtttcacaga aaggcaggtg caggtaaagc
     1861 gaccatgtca tcgctacatc ttcgcacgcg ctttcgagtt cgttcagcca ctgtgcagtc
     1921 gtcggcgagt ttgaccagaa cggcaccgtt ggataactcg tgtagcgggg cgccggcacg
     1981 tcgtacttgg cgaataaatc cgtcacgaca gcacctctct caccgtacta acgaacaggc
     2041 gaacattctc ctccggcgtg ccgggtagaa caccgtgacc gaggccgcac acccacccgt
     2101 cgcgcgtgtg gttcgtcaac ggtttcagat aatcgcgcag tctctttttc aattcgccgt
     2161 gctcacacag cagcaaggcc ggatcgaagt tgccctgaac aaatccacga gtgaaaagat
     2221 cgagcgcctc gcgcaagtcc caacgatagt caactccaat gcctgcgaaa tctccgtcag
     2281 tgaagactga gtgatcaagg tgatcgcgtt gcgtgccttt cgagtagtaa cccagacgtg
     2341 aaggaaatct ttgcgctagc agttccagtt gcggaataac ctccgcagcg aaaacgtgag
     2401 gcgacaactc accggcggcg gtgtcgaaaa tcatcaccag ctcagcgccg ctgcggagtt
     2461 gcagttcaat atttcgaatc agcaacggaa ctaatctctc gcagaacttt ggaaataaat
     2521 gcaggagtgt tttcgaaggc gcaagggtgc cgctgtgcga accttcgacg gcataagcaa
     2581 acaatgtcca cggccc
//
LOCUS       DASZZE010000265         2203 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_318502, whole genome shotgun sequence.
ACCESSION   DASZZE010000265 DASZZE010000000
VERSION     DASZZE010000265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2203)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2203)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2203
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_318502"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(54..239)
                     /locus_tag="VHD88_05140"
     CDS             complement(54..239)
                     /locus_tag="VHD88_05140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21210.1"
                     /translation="MWDLKRQIIWLVAGISFGTFIVYMDAHDEAGHFDRGVFAFWEII
                     LLAIILTLFFLYSRRRT"
     gene            complement(308..799)
                     /locus_tag="VHD88_05145"
     CDS             complement(308..799)
                     /locus_tag="VHD88_05145"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HVS21211.1"
                     /translation="MDIRIRRAQPNEAGALTDIAHAAKRFWGYPENWIQHWKNDLTIT
                     PDFITENEMYVAVIDEEIAGCCALVLQDSLAELEHMWIRPEHMGTGIGRALFQQMVER
                     ATNLKATDLEISSDPNAEGFYERMGAKRIGEVKSEIEGQPRVLPRMSVDLESAHKKEP
                     PGW"
     gene            1039..1986
                     /locus_tag="VHD88_05150"
     CDS             1039..1986
                     /locus_tag="VHD88_05150"
                     /inference="COORDINATES: protein motif:HMM:NF012607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HVS21212.1"
                     /translation="MERIVFLERNTLQASFRRPKFDHEWIEHAETRPEEVIERLRGAT
                     IVISNKLALREAQLSQSPLIKLIAVAATGFDNIDLDYCRRHGIAVCNTRGYAVNSVPE
                     HVLMLILALRRNLLAYREDVRRGLWQQSKQFCLLTHELHDIHSSTLGIVGYGSIGKAM
                     ARLAESIGMHVLIAERRKATAIREGRTPFEDMLRQSDVISLHCPLTEETRNMFARAEF
                     EMMKRDALLINTARGGLVEDAALVEALQRGLIAGAGFDALREEPPRQGSPLLDLNLPT
                     FIVTPHVAWASNEAMQALADQLIDNIEAFIAGQPRNLVI"
BASE COUNT          462 a          613 c          642 g          486 t
ORIGIN      
        1 gagccaagac gatgcagccg ccggattgag gaatgatgat gagttgctga gtgctaggtc
       61 ctcctgcggg aatagagaaa gaaaagcgtc agaataatcg ccagcaggat aatctcccaa
      121 aacgcgaaca cccctcggtc aaagtgcccg gcctcgtcgt gcgcgtccat gtaaacaatg
      181 aacgtgccga aagatatgcc ggcgaccagc cagatgattt gacgcttgag atcccacatg
      241 tgacttgcaa atctgagccc tccctcacgg tcgggctact gccccgattc tcggcgcgcg
      301 atcctcctca ccaaccaggc ggctctttct tgtgcgccga ttcaagatcg actgacatgc
      361 gtggcagcac gcgtggttgt ccttcgattt cggacttgac ctcgccgata cgcttcgcgc
      421 ccatgcgctc gtagaagcct tccgcatttg gatcagacga aatctccagg tcggtcgctt
      481 ttagattcgt cgctcgttcc accatctgct gaaacagcgc gcgaccgatt ccggttccca
      541 tgtgctccgg tctaatccac atgtgctcca gctcggctag ggaatcctgc agcaccaaag
      601 cgcagcagcc cgcgatctct tcgtcgatca ccgcgacgta catttcgttt tcggtaatga
      661 aatcaggtgt gatcgtgagg tcgttcttcc agtgctggat ccaattctct gggtagcccc
      721 aaaaacgctt ggcggcgtgc gcgatgtcgg taagcgcgcc ggcttcattg ggttgggctc
      781 ggcgaattcg aatgtccatg tctcagtttg aagtttagca cttttgattc aaatattgag
      841 tgggtgccgg ccgttcatat tgtactgagg agcccttgct gacgcgcggg cttctgacac
      901 tctgttatga ggccgtgtgt cagtagcccg accgtcaggg agggctagtt acttatggtg
      961 ctagccgccg ttgtagaatg cggcagagtt acagaggggg taaggaattc gccggagccc
     1021 gggcgagcaa agcaaaccat ggaacgaata gtctttctcg agcgcaacac gcttcaggcg
     1081 agttttcgcc ggccaaaatt cgatcacgaa tggatcgaac acgccgagac tcgacccgaa
     1141 gaagttatcg agcgattgcg cggcgcgacg atcgtgatca gcaacaagct ggccttgcgc
     1201 gaagctcaac tgtcgcaatc gccgctgatc aaactcatcg ccgtggccgc gaccggcttt
     1261 gacaatatcg atctcgatta ctgtcgccgc cacggaatcg cggtctgcaa cacgcgcggc
     1321 tatgccgtga attcagtgcc ggagcacgtg ctgatgttga ttctggcgct gcgccgcaac
     1381 ctgctcgcat atcgcgaaga cgtgcggcgc ggactatggc aacaatcaaa gcagttctgt
     1441 ttgctcactc atgagcttca cgacattcac agcagcacgc tgggcatcgt cggttacgga
     1501 tcgattggga aggcgatggc gcgactcgcc gagtcgatcg gaatgcatgt attgatcgca
     1561 gaacgcagga aggcaacggc gattcgtgaa ggacgcacgc cgttcgaaga catgctgcgg
     1621 cagagcgacg tgatcagtct gcattgtcct ttgactgaag agacgcggaa catgttcgcg
     1681 cgcgcggagt tcgaaatgat gaaacgcgac gctctgctaa ttaacaccgc gcgcggcgga
     1741 ttggttgaag acgcggcttt ggttgaagct ttgcagcgcg gcttgatcgc cggcgccggc
     1801 tttgatgcgc tgcgcgaaga gcctccgcgg cagggcagtc cgctactcga tttgaatctg
     1861 ccgaccttta tcgttacacc tcacgtcgcg tgggccagca acgaagcgat gcaggctctt
     1921 gccgatcaac tcatcgacaa catcgaagcg ttcatcgccg gacagccgcg gaatttggtg
     1981 atttgagaat agcttcgttt ggaggcggca ctcgtggcgc gactgctcgc cgcacaagtg
     2041 cggcttctaa actgaacgaa ggaattaagg cgtcgccgcc tcgccggctt ccgggtgatg
     2101 ttcatcctcg gtcgtgtaga ggttgaggat ttcgcggcct tgcctagatc gcggatcgat
     2161 cgtgcgcaga tgtttgcgcc ctttcatctc ccagatggcg gta
//
LOCUS       DASZZE010000266         2649 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_123035, whole genome shotgun sequence.
ACCESSION   DASZZE010000266 DASZZE010000000
VERSION     DASZZE010000266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2649)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2649)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2649
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_123035"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2157)
                     /locus_tag="VHD88_05155"
     CDS             complement(<1..2157)
                     /locus_tag="VHD88_05155"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR00422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004832 - valine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006438 - valyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HVS21213.1"
                     /translation="MIDIPKTYDPKEAEQHHYARWEECGYFAPEINKDPNAPVFTIVI
                     PPPNVTGSLHMGHALQHTMMDVLTRYKRMSGFRALWLPGMDHASISTQLMVTRELKKE
                     GLTRHDLGREKFVARAWQWKQEYGGQIVNQIRREGASVDWSRERFTMDENLSRAVREA
                     FVRFYEEGLISRGNRIVNWCPNDQTVLSDLEVLREPQKGKLYYLRYPFKNNSGAITVA
                     TTRPETMLGDTAVAVNPDDERYRALLGQRLILPLVNREIPLIADEFVESEFGTGAVKV
                     TPAHDPNDYEMGQRHNLAQVRVIDQFARMTEDAGSEFAGLDRYNARKKVVERFEELGL
                     LEKVVDYEFAISKCERCKTVIEPLISTQWFCRMDHLRDLALPKLRDDGKPRFVPEVPY
                     AKVYADWLENLRDWTISRQLWWGHQIPAWYTPDGRTIVAHSEQEARAKFAEEQREIKR
                     SLKQKQGINDEVLDERFPENAPLTQDEDVLDTWFSAALWPFSTMGWPDETDDLKTFYP
                     TSVLVTARDIIFLWVSRMVMTSLKFMGGEPFADVYVTGTVLDKHGQRMSKMKGNGIDP
                     LEVFDKYGVDATRLTLASVGSTDTRWNEKQVESYRNFANKIWNAARFCLLNADGAEAV
                     TDPFVGELSLPDRWILSRLNKTAREVNAQLESYEFHGAVQTLYHFFWDDFCDWYIELA
                     KADVTAEAPSPERGTARARLISILEQALRLLHPFTPY"
     gene            complement(2366..>2649)
                     /locus_tag="VHD88_05160"
     CDS             complement(2366..>2649)
                     /locus_tag="VHD88_05160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21214.1"
                     /translation="QEVEAIPATVESQEWEMVAAPAVEEVAEPAIIEESLASSTPSQV
                     NLSDLSPEIIDAIARRAVEQLSERVVREIAWEVVPELAESLIKHKFEKK"
BASE COUNT          564 a          789 c          676 g          620 t
ORIGIN      
        1 ataaggcgtg aacggatgca gcagtcgcaa cgcttgttcg agaattgaaa tcagccgtgc
       61 ccgcgccgtg ccgcgctcgg gcgaaggcgc ttccgcagtc acgtccgcct tcgccagttc
      121 gatgtaccaa tcgcagaagt cgtcccagaa aaaatgataa agcgtctgta cggcgccgtg
      181 aaactcgtaa ctttcaagtt gcgcgttgac ctcgcgtgct gttttgttca gacgcgaaag
      241 aatccagcga tcaggcagcg acaattcgcc cacaaatgga tcagtcactg cttcagcgcc
      301 gtcggcgttt agcaagcaaa agcgcgccgc gttccaaatt ttgttcgcga aattgcgata
      361 gctttcgacc tgcttttcgt tccaacgcgt gtcggttgag ccgaccgaag ccagcgtcaa
      421 gcgcgttgcg tcaacaccgt acttgtcaaa gacctcaagc ggatcgatcc cgttgccttt
      481 catctttgac atgcgctggc catgtttgtc gagcaccgta cccgtgacgt aaacgtcggc
      541 gaacggctcc ccgcccatga acttcaaact cgtcatcacc atgcgcgaca cccaaagaaa
      601 aatgatgtcg cgcgctgtta ccagcaccga cgtcggatag aaggttttta aatcgtcagt
      661 ctcgtcaggc caacccatcg tcgagaacgg ccacagcgcg gcggagaacc acgtgtccag
      721 cacgtcttcg tcctgtgtca gcggcgcatt ctcaggaaaa cgctcatcta gtacctcatc
      781 attaattcct tgtttctgtt tgagacttcg tttgatttct ctttgctctt cggcgaactt
      841 tgcgcgcgct tcttgttcac tgtgggcgac aatggtgcga ccatccggtg tgtaccacgc
      901 cggaatctga tggccccacc aaagctgccg cgagatagtc cagtcgcgca aattctcaag
      961 ccaatccgca tagactttcg cgtaaggaac ttcgggaaca aagcgcggct ttccatcgtc
     1021 gcgcaacttc ggcaacgcaa gatcgcgcaa atgatccatg cgacagaacc attgcgtcga
     1081 gatcaaaggt tcgatgactg tcttgcagcg ctcgcatttt gagatcgcaa actcgtaatc
     1141 cacgactttt tcgagcaaac caagttcttc gaacctttcg acaacttttt tgcgcgcgtt
     1201 ataacgatcg aggccggcga attccgagcc ggcatcctca gtcatgcggg caaactgatc
     1261 gatgacgcgc acctgcgcga gattgtgtcg ctggcccatc tcgtaatcgt ttgggtcgtg
     1321 cgccggcgtg actttgactg cgccagtgcc gaattctgac tcgacaaact catcggcaat
     1381 caacgggatc tcgcgattga cgagcggcag gatcagcctt tgtccaagca gagcgcgata
     1441 acgctcgtcg tctggattta ccgcgaccgc cgtatcgccg agcatcgtct caggccgcgt
     1501 ggtcgcgacc gtaatcgccc cgctgttgtt cttgaaagga tagcgaagat agtaaagctt
     1561 gcctttctgc ggctcgcgca acacttcgag atcggacagc accgtctggt cgttcggaca
     1621 ccaattgacg atgcgattgc cgcgagagat caatccctct tcataaaatc ggacgaacgc
     1681 ctcgcgcacc gcgcgcgaaa gattttcgtc catagtgaat cgctcgcgcg accaatcaac
     1741 cgaagcacct tcgcgccgta tctgatttac gatttgcccg ccgtactctt gcttccactg
     1801 ccaggcgcga gccacaaact tctcgcggcc cagatcgtga cgcgtcaatc cttctttctt
     1861 cagctcgcgc gtgaccatca attgcgtcga gatgctggcg tgatccattc ccggcaacca
     1921 caacgcgcga aaacccgaca tgcgtttgta tctggtcagc acgtccatca tcgtgtgctg
     1981 cagagcgtgg cccatgtgca gcgacccggt gacgttcggc ggcggaatca cgatcgtgaa
     2041 aaccggcgca ttcggatctt tgtttatctc tggcgcgaaa tagccgcact cttcccagcg
     2101 agcgtaatga tgctgctcgg cttcttttgg atcgtaagtc ttggggatgt cgatcatctc
     2161 tacttgactc aaacttcgtt tagaggcggg acttgtcccg tcacaacaag cgtctcgtct
     2221 ttctctgcct cattggattg taaatcaagc gatgcgcgtt ttcatatcgg cgcgacgaag
     2281 cggaagcgat ctgggcctcg caccaaagaa taaaggcggg acaagtcccg cctctaaacg
     2341 ttcccggatt cttcacactc tgacgttact tcttctcgaa cttatgtttg atcagtgact
     2401 ccgccagctc gggcacgact tcccacgcga tttcgcgcac gactctttcg gagagctgct
     2461 caaccgcgcg acgcgcgatc gcgtcaataa tttccggcga cagatcagag agattgacct
     2521 gcgacggtgt tgaacttgcc agactctctt cgatgatggc tggctccgca acttcttcga
     2581 cggcaggtgc ggcgaccatc tcccactcct ggctttcgac tgtggccgga atcgcttcga
     2641 cctcttgtg
//
LOCUS       DASZZE010000267         5724 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_136700, whole genome shotgun sequence.
ACCESSION   DASZZE010000267 DASZZE010000000
VERSION     DASZZE010000267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5724)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5724)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5724
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136700"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..249
                     /locus_tag="VHD88_05165"
     CDS             <1..249
                     /locus_tag="VHD88_05165"
                     /inference="COORDINATES: protein motif:HMM:NF012619.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase delta/epsilon chain alpha-helix
                     domain-containing protein"
                     /protein_id="HVS21215.1"
                     /translation="NGSSSQLHVSGGFVEVSDDRVAVLAEVAERPEEIDAARARLSRD
                     HTEKQLSSWSGTEEDFEKARAKLERSMVRLKLASESRP"
     gene            complement(784..1536)
                     /locus_tag="VHD88_05170"
     CDS             complement(784..1536)
                     /locus_tag="VHD88_05170"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: protein motif:HMM:NF003625.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033856 - pyridoxine 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HVS21216.1"
                     /translation="MTARLNVNIDHVATVRQARRAPEPSVVAAAMICEQAGADGITIH
                     LRGDRRHIQDPDLTVLRQAVTTYLNVEMAATEEMVKIAIDVRPDAVSLVPENPGEITT
                     EGGLNVRPNIAIVRAAVNRLRDSGIVASLFIDPDPQQIEAAREVSAQQVELCTAAYAE
                     ATLGAQGIHGEGAVRANQELRRLREAAALAAQYGLHVAAGHGLTLRNVGAVAQISEIE
                     EFNIGHSIVSHAVFVGLERAVREMREAIVGKV"
     gene            complement(1661..2470)
                     /locus_tag="VHD88_05175"
     CDS             complement(1661..2470)
                     /locus_tag="VHD88_05175"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dolichyl-phosphate beta-glucosyltransferase"
                     /protein_id="HVS21217.1"
                     /translation="MPLKLSIVVPAYNEAARLGVGLRKILAYLNEKERDAELIVVDDG
                     SDDNTAAVAESCVADSGDVATRLIHYEPNRGKGYAVRAGLLAAQANVVLFSDADLSTP
                     ITETPKLVNPIRNGECDLTFGSRALDRRLIGVHQPWRREQGGRVFNLIVRLATGLPFW
                     DTQCGFKAFRLSVCRPLIEAAQIDRFGFDVELIYLAYLARLRLREIPVRWDHDPASKV
                     AVMRDSFRMVDEVRRIRREVDRGAYSEAISAARTAAMVEAKHGHRAANVAR"
     gene            2598..4373
                     /locus_tag="VHD88_05180"
     CDS             2598..4373
                     /locus_tag="VHD88_05180"
                     /inference="COORDINATES: protein motif:HMM:TIGR00225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HVS21218.1"
                     /translation="MTRSFTIFAVFVIVTASVAGGLQTQLARRRVANSAARSSVTTPT
                     DKHEADKIENDYREAISTVEDKYAGDIDYEKATQAAIQGMLFTLDPHSVYFSSAEFRK
                     LKEDQASSFYGIGVQIVRHDDGVYIQSVVQGTPASRAGLRYGDRIVEIDGKDARGWSS
                     AEVSKNVRGARGEAVLLKVERAGQEAALNFKIVRNAVPLPSIRNAFMIGPATGYVGLI
                     GGFQHTTDDEIRESIASLKKEGMRQLVLDLRNNPGGLLDQAIDVASEFLPRDKVIVSV
                     KGRSEYHDPAVYKSNGSEPEDLPLVLLINRNTASASEIVAGAIQDHGRGLVVGETSFG
                     KGLVQHVFQLPFNTGLTLTTARYYTPYGRSLQRDYSSGSLYDYYVRHDQEDKQQVTQP
                     GQPSPSELTPARNTNAPAFHTAAGRVFYGGGGITPDIEARALTASVVRGRIIEAAFYF
                     TRELAAGTIPGLESYRVDRVAYNREPKATDSPISDRVLEAFRNYLHKDASRHLQPTQI
                     DADIEFVKLRLREEIVTATFGADAGQRVLLESDPQALRAIGVLPDAKRLAEAVRNGTP
                     ISLNFRRLRVFPGIPESEEQDQILV"
     gene            4458..>5724
                     /locus_tag="VHD88_05185"
     CDS             4458..>5724
                     /locus_tag="VHD88_05185"
                     /EC_number="3.5.1.4"
                     /inference="COORDINATES: protein motif:HMM:NF006006.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HVS21219.1"
                     /translation="MNRRTFVRNSVIGGVGLASARVSASTTEVSSKNAAASSPPASEL
                     NELTVAELQSGMASGRFTAHSLARKYLDRIDEIDKHGPAINSVIELNPDALSIASDLD
                     KERKAKGARGPLHGIPVLIKDNIDTHDRMTTTAGSLALGGSIPLQDSFVAKKLRDAGA
                     VILGKTNLSEWANFRSSHSTSGWSGRGGQTKNPYVLDRNPCGSSSGTGAAVAANLAAI
                     GVGTETDGSVVCPSNANSLVGIKPTLGLISRAGIVPIAHSQDTAGPMCRTVTDAAILL
                     GSLAGIDSRDDATKAGAGKSIADYRKFLDADGFRGARIGVHRKGFGFNDAVDKLMGDC
                     IDIMKKRGAIIVDPADIPTQGKFDDSELEVLLYEFKADLNSYLASLGPRAPVKSLKEI
                     IDFNEQYRDREMPYFGQDLFIKAQAKGPLT"
BASE COUNT         1247 a         1671 c         1614 g         1192 t
ORIGIN      
        1 aacggaagca gctcgcaatt gcacgtctct ggtggatttg tcgaagtcag cgacgatcgc
       61 gttgctgtgc tcgccgaagt cgccgaacgt cccgaagaga tcgacgcggc gcgcgcgcgc
      121 ctctcgcgtg accacactga gaaacaattg agttcgtgga gtggaaccga agaagatttt
      181 gaaaaagcgc gagcgaaact ggaacgttca atggtgcgat tgaaactagc ttcggaatca
      241 aggccttgat gacttacggt ttattgagtg ccgtctcaag agcctctcgc cagggtatcc
      301 cacgtcgaat aggatcccac ccaatgaatc tatttagaac gtgaccttcc gacgataaga
      361 taagaatctg aggtatggct ctctttccgc cctccagtga agtacttgcc tgtgtgtcaa
      421 tccatccaag cggataacga attcttgatc tagccgcaaa ccttcggata cgaaccacgc
      481 ttgttcgacg gtcttcaccg gacaggccaa tgactgctac gccctgcctc gcgaaatcct
      541 tatcaatatg tgtgagctca atcattacaa atcgacacgg accacaccat gacgcccaca
      601 gacttagaac aatgaccttc ttgttggagg gcatcagtct gataggtcgg ctcctttgaa
      661 gcgacggaaa gcgcgcgcgc atcacttttt cagctataga ttcttttgga gcatcctgtg
      721 agtacgcact tccgtaagaa atgaggagta gcgcgaccga gatgattgct ttgatcgggc
      781 tcattacacc ttaccgacaa ttgcctctcg catctcgcgc acggcgcgct ctaatcccac
      841 aaagacagca tgtgagacga tgctatgacc gatgttgaat tcctcaatct cactgatctg
      901 tgctaccgcc ccaacgttac gtagggtaag gccgtgacca gcggcgacat gcaagccata
      961 ctgggctgct aatgctgcgg cttcccgcaa gcgccgcagt tcctgattcg cgcgcaccgc
     1021 gccttcgccg tgaattcctt gcgcccctag agtcgcttcg gcgtaagcgg cggtgcataa
     1081 ctcgacctgc tgtgcgctga cttcgcgtgc ggcttcgatc tgttgcgggt cggggtcgat
     1141 gaacaggctc gcgacgatgc ctgaatcgcg caagcgattc acagccgcac gcacgatggc
     1201 gatattcggg cgcacattca gaccaccttc agtagtaatc tcgccggggt tctctggcac
     1261 cagactaaca gcatcgggcc gaacgtcgat cgcgatcttc accatctctt cagtcgcggc
     1321 catctcgacg ttcaagtaag tagttactgc ttgccgcagc acagtcaggt cgggatcctg
     1381 aatgtgacga cgatcgccgc gcagatggat cgtgattccg tccgcgccgg cttgttcgca
     1441 gatcatcgcg gcggcaacga cgctcggctc aggcgcgcgc cgcgcctgtc gcacagtagc
     1501 gacgtgatcg atgttgacgt tgagtcgcgc agtcatttca atctaaatta ctcccagcgt
     1561 tggacgccct ccctcacggt cgggctactc cgcttttcga atgctaagtt gtctttggtc
     1621 gcgcgtcaat ccacgtttcg ttcgggtagc cgatcacaat ttaccgggca acgttagcgg
     1681 cgcgatgacc gtgtttcgcc tcaaccatcg ccgccgttcg cgccgcgctg attgcttcac
     1741 tgtacgctcc gcgatcgact tcgcggcgga tgcggcgcac ttcgtcaacc atgcgaaagc
     1801 tgtcgcgcat gaccgcgacc ttgctcgccg gatcgtgatc ccagcgcacg ggaatctcgc
     1861 gcaaacgcaa acgcgctaag taagcgaggt agatcaattc gacgtcaaaa ccaaagcgat
     1921 cgatttgcgc agcttcgatc agcggccggc atacgctcag gcgaaatgct ttgaagccgc
     1981 actgcgtgtc ccagaacggc aggccggtag ccaggcgcac aatcagattg aaaactcggc
     2041 cgccctgttc gcggcgccag ggttgatgca cgcctatcaa tcggcgatcg agcgcgcgcg
     2101 agccaaacgt gagatcgcac tcgccgttgc ggatcggatt taccagcttg ggtgtctcgg
     2161 taatcggcgt cgagaggtcg gcgtctgaga acaacacgac attggcctgc gcggcgagca
     2221 gtccggcgcg caccgcgtaa cctttcccgc ggtttggctc gtaatgaatc agccgcgtcg
     2281 cgacatcgcc cgaatcggcg acgcaactct cggcgactgc ggcggtgtta tcgtctgaac
     2341 cgtcatccac aacgatcaat tccgcgtcgc gttccttttc gttcaggtac gcgaggatct
     2401 tgcgcaagcc gacgcctaaa cgcgccgctt cgttataagc gggcacgacg atcgaaagtt
     2461 tcagcggcat tcgcgattat tctcgatgaa gactggttcc ggcacaagct agacccagag
     2521 ctttcggcgg tcagcgcgcg gctgtgttat attttggtgc tcagcttgat gtagccgaaa
     2581 tcgacggaac cactcttatg actcgcagct ttaccatctt cgcggtcttt gtaatcgtca
     2641 ccgccagtgt ggccggaggt ctgcagacac aattggcccg ccgtcgcgtc gccaactcgg
     2701 ccgccagaag ctcagtgacg actcccacgg ataagcacga agctgacaag atcgaaaatg
     2761 attatcgcga ggcgatctcg accgtcgaag ataagtacgc gggcgacatc gattacgaaa
     2821 aagccacgca ggccgcgatt cagggaatgc tcttcacgct cgatccgcac tcagtctatt
     2881 tctcctccgc agagttcaga aagttaaaag aagatcaggc ctcaagcttc tacggcattg
     2941 gcgtgcagat cgtgcgccac gatgacggcg tttacattca atcggtcgtc caaggcacgc
     3001 cggcgtcgcg cgcgggactg cgctatggcg atcgcatcgt cgaaattgac ggcaaagacg
     3061 cacgcggctg gtccagcgcc gaagtttcca aaaacgtgcg cggcgcgcgc ggcgaagcgg
     3121 tgctgttgaa agtcgaacgc gcgggccagg aagctgccct caatttcaag attgtgcgca
     3181 acgcggtccc gcttccttca attaggaacg cgttcatgat tggccccgcc acgggttatg
     3241 tcggattgat cggcggcttt cagcacacga ccgacgatga aattcgcgaa tcgattgcga
     3301 gcctcaagaa ggaaggcatg cgccagctcg ttctggattt gcgcaacaac cccggtggat
     3361 tgttggatca ggcgatcgac gtcgccagcg agtttttgcc acgcgataaa gtgatcgtgt
     3421 cggtcaaagg acgcagcgaa tatcacgacc cggcagttta caaatcgaat ggcagcgagc
     3481 ctgaggatct gccgctcgtg cttctgatca atcgcaacac cgcgtcagct tctgagatcg
     3541 tcgcgggagc aatccaggat cacggtcgcg gcctagtcgt aggcgaaacc agctttggca
     3601 aaggattggt ccagcacgtg tttcaactgc cgttcaatac cggattgacg ctgacgacgg
     3661 cgcgctacta cacgccttac ggtcgttcgt tgcagcgcga ctattcgagt ggttcgctct
     3721 acgactatta cgtgcgtcac gatcaggaag acaagcaaca ggtcacgcag ccgggacagc
     3781 cttcgcccag cgaattaacg ccggcgcgca acacgaacgc tccggcattt cacaccgccg
     3841 cgggccgcgt gttttatggc ggcggcggca tcacgccgga catcgaagcg cgggcgctga
     3901 cggcctcagt ggttcgcggt cgcatcattg aagctgcgtt ttatttcacg cgcgaactcg
     3961 cggcaggcac gattcccggt ttggagtcgt atcgcgtcga tagggtcgca tacaaccgtg
     4021 aaccaaaggc gactgattct ccgatctccg atcgagtgct cgaggctttc cgaaactatc
     4081 tgcacaaaga cgcatcgcgg catttgcaac caacgcagat cgatgcggac atcgaattcg
     4141 tcaagctgcg cctgcgcgaa gaaatcgtta ccgctacatt tggcgccgat gcgggacagc
     4201 gtgtcttgct cgaaagcgat ccgcaagctt tgcgcgcaat cggcgtgctg ccggatgcca
     4261 agcgtctggc cgaagccgtg cgcaacggaa cgccgattag tcttaacttt cgtcgcttgc
     4321 gagtttttcc cggcatccct gaaagcgaag agcaagacca gattctcgtc tgaattccca
     4381 ccaatccgat ttgacttttg cgagccttca gactagaagt ggctcgatcc aacataaaat
     4441 tgcagtgagg acttcacatg aatcgtagga cgttcgtgcg caacagcgtc attggcggcg
     4501 tcggtctcgc cagtgcccgc gtctccgcat cgaccacaga agtttcgagc aagaacgcag
     4561 cagcaagctc accgcccgca tctgagctca acgagctgac cgttgccgag ctgcaaagcg
     4621 gcatggcttc gggaagattc accgcgcatt cgctagcacg aaaatatctg gatcgcatcg
     4681 acgaaatcga taagcacggt cccgcgatca attcagtgat tgagttgaac cccgacgcgc
     4741 tgtcgatcgc gagcgatctc gataaagagc ggaaggcgaa gggagcgcgc gggccgctgc
     4801 acggcattcc cgtgctcatc aaagacaaca tcgacacgca cgatcgcatg acgacgactg
     4861 ccggttcgct ggcgctgggc ggatcgattc cgttgcagga ttcgtttgtc gcaaagaaac
     4921 tgcgcgacgc cggcgcggtg attctcggca aaacgaatct gagcgagtgg gccaactttc
     4981 gatccagtca ttcgaccagc ggctggagcg gccgcggcgg tcaaacgaag aatccctacg
     5041 tacttgatcg caatccgtgc ggctcgagtt ccggcaccgg agctgcagtc gccgcgaatc
     5101 tcgctgcgat tggcgttggc accgaaaccg atggctcggt agtttgtcct tcgaacgcga
     5161 attcgctggt tgggatcaag cccacgctcg ggctcatcag ccgcgccgga attgttccga
     5221 tcgcgcacag tcaggacacg gctggaccga tgtgccgcac cgtcaccgac gccgcgattc
     5281 tgctcggctc gcttgccgga atcgactcac gcgacgacgc cacgaaggct ggcgcgggta
     5341 aatcaatcgc tgactacaga aagtttctcg acgcggacgg atttcgcgga gcgcgcattg
     5401 gcgtgcatcg caagggcttt ggttttaatg acgccgtgga caagctgatg ggcgactgca
     5461 tcgatatcat gaagaaacgc ggcgcgatca tcgtcgatcc ggctgacatt cccacgcagg
     5521 gcaagttcga cgattcggaa ctcgaagtac tgctttacga attcaaagcc gacttgaatt
     5581 cttatctcgc ctcgctgggt ccgcgcgcgc cagtgaagtc tttgaaagaa atcatcgact
     5641 tcaacgaaca gtatcgggat cgcgagatgc cttactttgg tcaggatctt tttatcaagg
     5701 cgcaggcgaa agggccgctg actg
//
LOCUS       DASZZE010000268         2275 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_7574, whole genome shotgun sequence.
ACCESSION   DASZZE010000268 DASZZE010000000
VERSION     DASZZE010000268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2275)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2275)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2275
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7574"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..279
                     /locus_tag="VHD88_05190"
     CDS             <1..279
                     /locus_tag="VHD88_05190"
                     /inference="COORDINATES: protein motif:HMM:NF016408.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HVS21220.1"
                     /translation="GDIIAGQRIELGRAGKLNGNIQTPSLVIEQGGVFEGSCKMVQQK
                     AATERPAKVERKENVIDAPSLQAVKVDTASKPDGSIKKPEIASVAVAS"
     gene            553..>2275
                     /locus_tag="VHD88_05195"
     CDS             553..>2275
                     /locus_tag="VHD88_05195"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HVS21221.1"
                     /translation="MVASYTAATAQRPRANRPVSAIPTNVLLRIVRAEDERRWDNTLP
                     VLFGYKEASVRKRAALAMGRIGDERALPALIEVLKTEADNDVRQMIAFAIGEIESADG
                     AAALIEILDDTRAPAEVRARAVEALGKIGGALLSSARASSDRGNLPKPEDKPLAKIRT
                     TILEALRFEAGRRSMSDRETILLGLTAVLRTRPDGAGPVVVRFLHYTDFRIVADALNT
                     LARLRLKDGNEQVRQLLGSGDAVVRANAARVLGATEDKLAYDALLARALNDDDLRVRV
                     SAIRALGSLKDAKAAEPLLDRATRLSAGYRSKRSIGAGRAKELNELLEIGNTLGRLLS
                     NTNNNGALNWLWKIRVDEYFASPEFEIASARVSSDQYVQKTHRDIRELLGKPIDTSKI
                     MKDWKSLSGIAQGLQEIARTKDSPNAAAREKAQQILAHWLSSLDMPLFAVPAVTQAYA
                     DFKPTNLDQLLRKQLDEDDVIVRSTAAELLGNSPSSEPNARALVDALKRELSLTEKGE
                     MNDAVLAILDALAKQKTKEANDAIKTALDSSDHLIRLRAVALLKANVGDFSNRIGTVK
                     TRNTEADY"
BASE COUNT          532 a          594 c          682 g          467 t
ORIGIN      
        1 ggcgacatca tcgccggcca gcgcattgag ttgggtcgcg ccggaaaatt gaatggcaac
       61 attcaaactc cttcgctcgt gatcgaacag ggcggcgtct tcgaaggcag ttgcaagatg
      121 gttcagcaaa aggctgcgac cgaaaggcct gcgaaggtcg agcgcaaaga gaacgtcatt
      181 gatgcgccga gcttgcaagc agtcaaagtt gataccgcga gcaaacctga cggctcgatt
      241 aagaaacctg agatcgccag cgtcgccgtg gcgagctgat cgattagggc cgcatactgc
      301 tggagcgcgg agcgcgaagg ggttttgcgc gactcggttc cggacttgcc aagagggcgg
      361 acgttggtcc gccctttttg ttttcgatca cacgcttccg ctgggagcgc ggacattctt
      421 gttcacgatt gagcgcagag cgcgaacgag tttccgcgac aatctctttc ccacgcggta
      481 caatccaatc actaagcgcc tctgattatg caattgggaa gctatcgaac caccctcagt
      541 gctttgctgc tcgtggtcgc ttcgtacacc gccgcgaccg cgcagcgacc gcgcgcaaac
      601 agacctgttt ctgcgattcc gaccaatgtt ttgctgcgca ttgtgcgcgc cgaagacgag
      661 cggcgctggg acaatacttt gccggtcctg ttcggataca aggaagcgag tgtgcgaaaa
      721 cgcgcggcgc tggcaatggg ccgtatcggc gacgaacgcg cgctccctgc cttgattgaa
      781 gtcttgaaaa ctgaggctga caacgatgtg cgccagatga ttgcgttcgc aattggcgag
      841 atcgaatcgg cggacggcgc cgctgctttg atcgagatcc tggatgatac gagagcgccc
      901 gccgaggttc gtgctcgggc agtcgaagcg ctggggaaga ttggcggcgc gctgttgagc
      961 agcgccagag cttcaagtga tcgagggaat ctgccaaagc ccgaagacaa gccactggcg
     1021 aaaatcagga caactattct cgaagcgctg aggtttgaag cggggcgccg ttcgatgtct
     1081 gatcgcgaaa cgattctgct cggcctgacc gcggtcctgc gtaccagacc tgatggcgct
     1141 ggcccagtcg tcgttcgttt ccttcattac acagattttc gcatcgtcgc cgacgcgctg
     1201 aacaccctcg cgcgtctgcg tttgaaggat ggaaacgaac aagtgcgaca gttgcttgga
     1261 agcggcgacg cggtcgtccg cgccaacgcc gcgcgcgttc tcggcgcgac ggaagacaag
     1321 ctagcgtacg atgcgctgct ggctcgcgct ttgaatgatg atgacttgcg cgtgcgcgtc
     1381 agcgcaattc gcgcgctggg gagtttgaag gatgccaagg cagccgagcc attgctggat
     1441 cgtgcaaccc gattatctgc tggctatcga tcgaaacgat ctatcggtgc agggcgagcg
     1501 aaggaattga acgaactact cgaaatcgga aacactctgg gacgacttct ctctaatacg
     1561 aacaataacg gtgctttgaa ttggctctgg aaaattcgag tggacgaata cttcgcatcg
     1621 cctgaatttg agatcgcctc tgcgcgagtc tcaagcgatc agtatgttca gaaaacgcat
     1681 cgagatatca gagagctttt ggggaaaccg attgatacgt cgaagatcat gaaggattgg
     1741 aaatccctat cgggtattgc gcagggactc caggaaatcg ccaggacaaa ggatagcccg
     1801 aatgccgcgg cgagagaaaa agcccagcag atcttggcac actggttgag cagtttagat
     1861 atgccacttt ttgctgtgcc ggcggtgact caggcttatg cggatttcaa gccgacgaat
     1921 ctcgaccaac tgctgcgcaa acaattggat gaggatgatg tcatagtacg ttcgacggca
     1981 gcggaactgt tggggaattc gccgtctagt gaaccaaatg cgcgggctct agttgatgca
     2041 ctgaaacgcg aactctctct aaccgaaaaa ggtgagatga acgacgcggt cctcgcgatt
     2101 ctcgacgcgc tcgcgaaaca gaaaaccaaa gaggcgaatg acgcgatcaa gacagcgctg
     2161 gattcttccg atcatctgat tcgactgaga gcggtggcgc tattgaaagc gaacgtcggc
     2221 gacttttcga atcgcattgg cacggtaaag acgcgcaaca ctgaagctga ctatc
//
LOCUS       DASZZE010000269         2634 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_299223, whole genome shotgun sequence.
ACCESSION   DASZZE010000269 DASZZE010000000
VERSION     DASZZE010000269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2634)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2634)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2634
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299223"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1479
                     /gene="hflX"
                     /locus_tag="VHD88_05200"
     CDS             <1..1479
                     /gene="hflX"
                     /locus_tag="VHD88_05200"
                     /inference="COORDINATES: protein motif:HMM:TIGR03156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HVS21222.1"
                     /translation="RIELPDFKRVRVAGDRFRGLRCLHTHLRGEELTRDDLTDLALLR
                     LDLMAAIDVDDSNGLPGVVRAAHLLPFNASEAATNGHAKQFAFLDPASPAKLDLDFLA
                     LIDALEAEMARNRRTARRTVGSDAAILVNVTTGALADAEDSMAELRELTQSAGLSVLD
                     EIIQRRSMIDPRTVLGKGKLDELLIRAMQVGADAIIFDRELQAAQVRSISEATDLKVI
                     DRSQLILDIFAQRAQSREGKIQVELAQLKYILPRLVLGQNSAFSRLAGGIGGRGPGET
                     KLETDRRRVRDRIHRLEKELAAQGRHREQRRKERLRHRVPIISVVGYTNAGKSTLLNT
                     LTSSHAVAEQRMFATLDPTTRRLRLPREQEVIINDTVGFIRDLPPDLLAAFRSTLEEI
                     SGSCLLIHLVDAANPRFRQQIESVERVLAELKFDQIPRLLVLNKVDLIDNGPLDALKR
                     QAGGNDARDCLGISALRPNSLLPMLKTIGRMLSRNLTAVGQR"
     gene            1479..>2634
                     /locus_tag="VHD88_05205"
     CDS             1479..>2634
                     /locus_tag="VHD88_05205"
                     /inference="COORDINATES: protein motif:HMM:NF019318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HDIG domain-containing protein"
                     /protein_id="HVS21223.1"
                     /translation="MSPRPRFTSKLTRARNAVLGVILRPFRLFSAASQFVIGFVSLVI
                     VTTLLVLKWPPSLSSARWLVLVIASYFILWRLVDRHASGVELSVSNRRAFALAGSAIM
                     VETAMMRLGFMLAASVSAESIGPPFNDAAIWKFAIPFAAASLLVTMLIDRQIGMITGV
                     IAAAFAGLLAPHGAQTAVYALVSCAAAVYGIKHYRERQSVTLAGLVVAGVNAITAVAL
                     IVSTPQSRTMKGALLASGCGIASGLLTIIFASGGVPINESLFGILTDMRLLELSNADI
                     PVLNQLALRAPGTNQHSHAVSQLAEDACRAVGANALLARIGSLYHDIGKVAAPDHFVE
                     NQTGANPHDRLRPAASAKIITSHVTYGLKLAKEIGLPKQIADFIPQHHGTR"
BASE COUNT          531 a          764 c          762 g          577 t
ORIGIN      
        1 cgaatcgaat tgccggactt taagcgagta cgcgtcgccg gagatcgctt tcgcggcttg
       61 cggtgcttgc acacgcatct gcgcggcgaa gagttgacgc gcgatgacct cacagacctg
      121 gcgctgctgc gtctggatct aatggccgcg atcgacgttg acgatagcaa cggattgccc
      181 ggcgtggtgc gcgccgcgca cttactgcca ttcaatgcta gtgaagccgc aacgaatggc
      241 cacgcaaagc aatttgcttt tctcgatccc gcgtcaccgg cgaaactcga ccttgatttt
      301 ctcgcactga ttgatgcact ggaagccgag atggcgcgca accgtcgcac tgcgcggcgc
      361 accgtcggct ctgacgcagc gattctcgtc aacgtcacca ccggcgcgct cgccgacgcg
      421 gaagactcga tggctgaact gcgcgagctg acgcaatcgg ccgggctgtc tgtgctggac
      481 gagataattc aaagacgatc catgatcgat ccgcgaacag tgttgggcaa aggcaagctc
      541 gacgagttgt tgattcgcgc gatgcaagtc ggggccgacg cgatcatttt cgatcgcgag
      601 ttgcaagcgg cgcaggtgcg ctcgatttct gaagcaaccg atctgaaagt catcgatcgc
      661 tcgcaactca tccttgacat ctttgcgcag cgcgcgcaat cgcgcgaagg aaagatccag
      721 gttgagttgg cgcagttgaa atatattctt ccgcgcctcg ttctcggcca aaactccgcg
      781 ttttcacgac ttgcgggcgg gattggcggc cgtgggccgg gtgaaacgaa actcgaaacg
      841 gatcgccggc gtgtgcgcga tcgaattcat cgcctcgaaa aagagctggc cgcgcaaggc
      901 aggcacaggg aacagcggcg caaggaacgc cttcgtcatc gcgtgccgat tatttcggtc
      961 gtcggctaca caaacgccgg caagtcgact ttgctgaaca cgctcacgtc cagtcacgcg
     1021 gtggccgaac agcgaatgtt cgccacgctc gatccgacga cgcggcgttt gcgtctgccg
     1081 cgcgaacagg aagtgatcat caacgacacc gttggcttca ttcgcgattt gccgccggat
     1141 ttgctcgctg cttttcgatc cacgctcgaa gagatttccg gcagttgttt gctgattcat
     1201 ttggttgatg cagccaatcc acgttttcgg caacagatcg aatcagtgga gcgcgtgctc
     1261 gccgaattga agttcgatca gataccgcgc ctactcgttc tcaacaaagt cgatctgatt
     1321 gacaacggac cgctcgacgc gctgaagcga caagcgggcg gcaacgacgc tcgcgactgc
     1381 ctggggattt cagccttgcg tccgaacagc ctgctgccaa tgctcaaaac catcggccgg
     1441 atgttgtcgc gaaatctgac ggctgtggga caacgatgat gtctcctcgt cctcgattta
     1501 cttcgaaact caccagagcg cgcaacgctg tgctcggcgt tattctccgt ccgtttcgct
     1561 tgttttcggc agccagtcag ttcgtcatcg gttttgtctc gctcgtaatt gtcacgacgc
     1621 ttctggtcct gaagtggccg ccaagtctga gttcggcaag atggcttgtt ctggtcatcg
     1681 caagctattt cattctgtgg cgactcgtcg atcgccacgc gagcggagtc gagctttccg
     1741 tttcaaaccg aagagcattt gctttggcag gctccgcgat catggttgag accgccatga
     1801 tgcgacttgg attcatgttg gctgcgagtg tttctgccga gagcattggc ccgccattca
     1861 acgacgcggc gatttggaag tttgcgattc cgttcgcagc cgcgtcgctg ctggtcacca
     1921 tgttaatcga ccggcaaatc ggaatgatca cgggagtaat agcagcggct tttgccggac
     1981 tgctggctcc gcacggcgca cagacagccg tgtacgcgtt ggtttcgtgc gcagccgcgg
     2041 tttacggaat caagcactac cgcgaacgcc agtcggtgac gctggccggt ttggttgtag
     2101 cgggcgtgaa tgcaatcacc gcggttgctc tgattgtctc gacgccacag tcgcgcacga
     2161 tgaaaggcgc gttgctcgcc agcggctgcg gtatcgccag tggcttgctg acaatcattt
     2221 ttgcctcagg cggcgtaccg atcaacgaat cgctgttcgg cattctgacg gacatgaggc
     2281 ttttggagct ttcaaatgct gatatccctg tcctaaacca gttggctttg cgtgcgccgg
     2341 gaacaaacca gcattcgcat gccgtcagcc aacttgccga agacgcttgt cgcgcagtcg
     2401 gcgcaaacgc actactggcg cgcatcggat cgctctatca cgatatcggc aaagtcgcgg
     2461 cgccggatca ttttgttgag aaccagaccg gcgccaatcc tcatgaccgt ctgcgtccgg
     2521 cggcgagcgc gaaaattatc accagccacg ttacctacgg cctgaagctg gcgaaagaaa
     2581 tcggcttgcc gaaacagatc gcagatttca tcccgcagca tcacggcaca cgca
//
LOCUS       DASZZE010000270         1783 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_7614, whole genome shotgun sequence.
ACCESSION   DASZZE010000270 DASZZE010000000
VERSION     DASZZE010000270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1783)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1783)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1783
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7614"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1765)
                     /locus_tag="VHD88_05210"
     CDS             complement(<1..1765)
                     /locus_tag="VHD88_05210"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF004349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004832 - valine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006438 - valyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HVS21224.1"
                     /translation="MLTRHKRMSGFRTLWLPGMDHAGISTQLMVTRELKKEGKTRHDL
                     GREKFVERVWKWKKESGGQITKQMRREGASVDWSREQFTMDENLSGAVREAFVRFYDE
                     GLIYRGNRIVNWCPNDQTVLSDLEVLREPQKGKLYYLRYPFKDGSGSITVATTRPETM
                     LGDTAVAVNPGDERYQSLIGQTLILPLVKREIPVIADDFVELEFGTGAVKITPAHDPN
                     DYEMGQRHNLAQVRVIDQFARMTEEAGAEFAGLDRYKARDKVVEKFEELGLLEKVVDY
                     EFAISKCERCKTVLEPLISTQWFCRMDQLRDLALAKLRKEGKPRFVPEVPYEKVYGDW
                     LENLRDWTISRQLWWGHQIPAWYDDGGQVTVARSVEEARQKAGNQNLTQDPDVLDTWF
                     SSALWPFSTMGWPDKTEDLKTFYPTSVLVTARDIIFLWVSRMMMTGLKFMGKEAFADV
                     YVTGTVLDKHGQRMSKTKGNGIDPLEVFDKYGVDATRLTLASVGATDTRWSERQVESY
                     RNFANKIWNAARFCLMNAEGAETVSDPFAGESRSLPLHDRWILSRLNKTAREVNAQLD
                     AYEFHGVVQTLYHFFWDDFCDW"
BASE COUNT          363 a          559 c          470 g          391 t
ORIGIN      
        1 accaatcgca aaagtcgtcc cagaaaaagt ggtagagcgt ctgcacgacg ccgtgaaact
       61 cgtaggcgtc gagttgggcg ttgacctcgc gcgcggtttt gttcagccgc gaaagaatcc
      121 agcgatcgtg caaagggaga ctacggctct caccggcaaa cggatcggaa acggtctccg
      181 cgccttcagc attcatcaga caaaagcgcg ctgcattcca aatcttgttg gcaaagttcc
      241 gatacgattc cacctggcgc tcgctccagc gcgtgtcggt cgcgcccaca gaagccagcg
      301 tcaggcgcgt cgcgtccact ccatacttat caaacacttc cagcggatcg atgccgttgc
      361 ctttcgtctt cgacatgcgc tggccatgct tgtcgagcac cgtgccggtg acatagacgt
      421 cggcgaacgc ttctttgccc atgaacttca gacccgtcat catcatgcgc gacacccaca
      481 gaaaaattat gtcgcgggcg gtcaccagca ctgaagtcgg atagaacgtt ttcagatcct
      541 cagtcttgtc aggccagccc atcgtcgaaa acggccacag cgctgacgag aaccaggtgt
      601 cgaggacgtc cgggtcctga gtgagatttt ggttgcccgc tttctggcgc gcctcttcga
      661 cggaccgcgc gacggtcacc tggccgccgt cgtcgtacca cgccggaatc tggtgccccc
      721 accaaagctg ccgcgagatg gtccagtcgc gcagattctc aagccaatcg ccgtaaactt
      781 tttcgtaagg aacttccgga acaaagcgcg gcttcccttc cttccgcaat ttcgccaacg
      841 cgagatcgcg caactgatcc atgcgacaaa accactgcgt tgagatcaag ggctcgagga
      901 ctgtcttgca gcgctcgcat ttcgaaatcg caaattcgta atcgaccacc ttttcgagca
      961 gtcccagttc ttcaaacttt tcgacgactt tgtcgcgcgc tttgtagcga tcgaggcccg
     1021 cgaattccgc gcctgcctct tcagtcatgc gcgcgaactg atcgatgact cgcacctgcg
     1081 ccagattgtg acgctgaccc atctcgtaat cgttcgggtc gtgagccggc gtgatcttga
     1141 ctgcgccggt gccgaattcc aactcgacaa agtcgtcggc aatgaccgga atctcccgct
     1201 tcacaagcgg cagaatcaat gtctgtccaa tcaggctctg atatcgctcg tcgcctgggt
     1261 tcacggcgac ggctgtgtcg cccagcatcg tctcgggccg cgtcgtcgct accgtgatcg
     1321 agccgctccc gtccttgaac ggatagcgca gatagtagag cttgcccttc tgcggttcgc
     1381 ggagaacttc gagatcggaa agcaccgtct gatcgtttgg gcaccagttg acgatgcggt
     1441 taccgcgata gatgagtcct tcgtcgtaaa agcgcacgaa cgcttcgcgc accgcgcccg
     1501 aaaggttctc gtccatcgta aattgttcgc gcgaccaatc aactgaagcg ccttcgcggc
     1561 gcatctgttt ggtaatctgg ccgccggatt ccttcttcca cttccaaacg cgctcgacaa
     1621 atttctcgcg acccagatcg tgacgcgtct ttccttcttt cttcagctcg cgcgtgacca
     1681 tcaattgcgt cgagatgccg gcgtggtcca ttcccggcag ccacaacgtg cgaaatccag
     1741 acatgcgctt gtggcgagtc agcacgtcca tcatcgtgtg ctg
//
LOCUS       DASZZE010000271         4136 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_152178, whole genome shotgun sequence.
ACCESSION   DASZZE010000271 DASZZE010000000
VERSION     DASZZE010000271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4136)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4136)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4136
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152178"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            39..734
                     /locus_tag="VHD88_05215"
     CDS             39..734
                     /locus_tag="VHD88_05215"
                     /inference="COORDINATES: protein motif:HMM:NF024214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HVS21225.1"
                     /translation="MKTNERAGTSPAPTNHALAAILLAAGRSRRMGAFKPLLPFGDKT
                     VVECCVQNLRDAGIHNIIVVVGHRAEEIRRQLKNFDVIFALNPDPDSEMGASIARGVE
                     ALSQDVKAVLIALVDHPAVPSEIIKSLIEEWRLAKAKLIQPEHESRGGHPVLIDLVYR
                     DELLNLDPRRGLRALFDKHREQACRLPVESPFIARDMDTWEDYLALHEAVFGMKPSPM
                     AGFGKIGSEPTGT"
     gene            850..1341
                     /locus_tag="VHD88_05220"
     CDS             850..1341
                     /locus_tag="VHD88_05220"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HVS21226.1"
                     /translation="MIAVSVLVAAFAQGALAQDRTAEFSLRAVDGNTITSESLHGEVA
                     VLAFGASWLPLTRNQLEGVKKLADQYAGRGVAVYWVSTESESPKSKNYASDDQLRELA
                     RKYKVTVLRDPDGAVSKKLGVDQLPSVVIMDKQGNVSGVIGGMDPNANLTTQLAARLD
                     KIL"
     gene            complement(1413..2069)
                     /locus_tag="VHD88_05225"
     CDS             complement(1413..2069)
                     /locus_tag="VHD88_05225"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF014591.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Maf family protein"
                     /protein_id="HVS21227.1"
                     /translation="MEDKRNNQASESSRDDLICNRSNDGEMPAIPKLLLASASPRRAE
                     ILRTVGWPFETLAVDIDESRRAGETAASYVERLALAKAEAAALLRPDSMIVGADTVVV
                     IQDAILGKPHDEDDARRMLRLLNDLWHQVLTGVAVFNSVAAESKVAHETTEVKFAAMT
                     DDEIAWYVSTGEPMDKAGAYAIQGRGARFIEEIKGDYFNVVGLPVRQLYKLMNEFRSE
                     "
     gene            2165..2644
                     /locus_tag="VHD88_05230"
     CDS             2165..2644
                     /locus_tag="VHD88_05230"
                     /inference="COORDINATES: protein motif:HMM:NF017103.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF721 domain-containing protein"
                     /protein_id="HVS21228.1"
                     /translation="MIDLTRLLPKLAGTNPAMTEVAAKIAWTRAAGDGLRRHAVPFRL
                     YRKQLIVSVADAIWQKQLRAMSAELLFRINRLLGREVVDFIEFRVDPATVDQTRAQTL
                     SHEQRSPAERGQPIPAELISAAGSIADHDLRQHFLRAAENCITRRDVIESESGNPRY"
     gene            2647..2946
                     /gene="gatC"
                     /locus_tag="VHD88_05235"
     CDS             2647..2946
                     /gene="gatC"
                     /locus_tag="VHD88_05235"
                     /inference="COORDINATES: protein motif:HMM:TIGR00135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HVS21229.1"
                     /translation="MPITESDIERIAQLAHLEITDEERRVFAPQIADIVTYVEQLNEI
                     DTSAIEPALGGLTLEGERTAVLRSDEVQPSLGQRLALDQAPDPAAGHFRVPKVLG"
     gene            3224..3703
                     /locus_tag="VHD88_05240"
     CDS             3224..3703
                     /locus_tag="VHD88_05240"
                     /inference="COORDINATES: protein motif:HMM:NF017517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004725 - protein tyrosine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-tyrosine phosphatase family protein"
                     /protein_id="HVS21230.1"
                     /translation="MARQACYRSSSARGDWLTDEVRAWKQAGFDIMVSLLTKDESDEL
                     GLADEAHLSRVHGLQFCNFPIPDLGVPKSSAAARELIDKLNGALAAGKNVGIHCRQGI
                     GRSGLVAASLLVDSGVDPETAFRQVSAARGLPVPETSDQRDWVLELARESAASLVKG"
     gene            3721..>4136
                     /locus_tag="VHD88_05245"
     CDS             3721..>4136
                     /locus_tag="VHD88_05245"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HVS21231.1"
                     /translation="MSDSIATLRGSIARGETTARAIIASALDAAEKLNGKLNAFLEID
                     RAGALERADAIDAKMKSHARETPALPALPLAGVPIAIKDNICVRGLQTSCGSRILGPY
                     HAPYNATVIERLLAAGSVIVGKTNCDEFAMGSSNENS"
BASE COUNT          945 a         1140 c         1161 g          890 t
ORIGIN      
        1 gatgtagggg cagggctggt cactgcccgc aaacaatttt gaagaccaac gaacgggcgg
       61 ggacgagccc cgccccgaca aaccacgctc tcgccgcaat tctcctcgcc gccgggcgct
      121 cgcggcgcat gggcgcgttc aagcctctgc ttccctttgg cgataagaca gtcgtggaat
      181 gctgcgtaca gaatcttcgc gatgccggaa tccacaacat catcgtcgta gtcggacatc
      241 gagccgaaga gattcggcgc caactcaaga acttcgatgt tatcttcgct ctcaatcccg
      301 atcctgatag cgagatgggt gcttcgatag ctcgcggagt tgaggcgctc agtcaagacg
      361 tcaaagcagt attgatcgcg ctggtggatc atcccgcagt tccatccgaa ataatcaaat
      421 cgctgatcga agaatggcga ctcgccaaag caaaacttat acagcctgaa cacgaaagtc
      481 gcggcgggca tccggtctta atcgaccttg tttaccgcga cgaattgctc aatctggatc
      541 cacggcgcgg tttgcgtgca ctgtttgaca agcatcgcga acaggcctgc cggctgccgg
      601 ttgaatcgcc tttcattgcg cgcgacatgg acacgtggga agattatctc gccttgcatg
      661 aagccgtatt cggcatgaaa ccctcgccaa tggcggggtt tggaaaaatt ggcagcgaac
      721 caacgggaac ctagcggaac tcatctaagt ggctgtcagt cgtcgcggca agttgaagag
      781 ggttgggtga tgcgagcaga acgacgacaa aggagatcga tgatgttaac aagcattcca
      841 agatgcgcag tgattgcggt gtctgttttg gtcgcagctt ttgcgcaagg agctttggcg
      901 caagaccgca cggcggagtt ttctttgcgc gccgttgatg gcaacacgat cacttcggaa
      961 agcttgcacg gcgaagttgc ggtgctggcg ttcggcgctt catggttgcc gttgactcgc
     1021 aatcagttgg aaggcgtaaa gaaactcgcc gatcagtatg cgggccgtgg cgtcgcggtt
     1081 tactgggtca gcacggaatc cgagtctccg aaatcaaaga actacgcgtc cgacgatcag
     1141 ttgcgcgagc tggcacgcaa gtacaaagtc acggtgctgc gcgatcccga cggcgccgtt
     1201 tccaagaagc tcggcgtcga tcagttgcca tcggtcgtga tcatggacaa gcagggtaac
     1261 gtctctggcg ttatcggtgg aatggatccg aatgcgaatc tcacgacgca gttggcagcg
     1321 cggctggata aaattctctg agattttaaa tcttgaattt gaaatcctga attctaattc
     1381 tgagctggca ctaaggttct attacggtag ggctactccg accgaaactc attcatcaac
     1441 ttgtaaagct gtctcaccgg cagacccacc acattgaaat agtcgccttt gatttcttcg
     1501 atgaagcgcg cccctcgtcc ctggatcgca taagcgccgg ctttgtccat cggttcgcca
     1561 gttgagacgt accaggcaat ttcgtcgtcc gtcatcgcgg cgaatttcac ttcagtagtt
     1621 tcgtgagcga cctttgattc agcagccacg ctgttgaaga ccgccacacc ggtcagcacc
     1681 tgatgccata ggtcgtttag cagccgcagc attcggcgcg cgtcgtcttc gtcgtgcggc
     1741 ttgccaagaa tcgcatcctg aataaccaca acggtgtccg cgcccacaat cattgagtct
     1801 ggacgaagca acgcggcggc ttcggctttt gccagcgcga gacgttcaac gtagctcgcg
     1861 gcggtctcgc ccgcgcggcg agactcgtca atgtccacgg ccagcgtttc aaatggccag
     1921 ccaactgtgc gcaagatctc tgcgcggcgc ggactggccg aagccagaag aagcttcgga
     1981 attgccggca tttcgccgtc gttagaacga ttgcaaatta aatcatcacg cgaagactcg
     2041 cttgcttggt tgtttcgctt atcttccatt agacttcaag actcgatttg aatggactgc
     2101 ggattatttt gaaagctttc aatcgcaagt tcaaattcaa gcatcggctg taacttcgaa
     2161 aacgatgatc gacctaacca ggttgttgcc gaaactagcg ggtacgaatc cggcgatgac
     2221 ggaagtcgcc gcgaagattg cgtggacgcg cgccgccggc gatggattgc gccggcacgc
     2281 ggttcccttt cggctttatc gcaagcaact gatcgtttca gtcgctgatg cgatctggca
     2341 aaaacaattg cgggcaatga gcgcagaact cttgtttcgt atcaatcgat tactcggtcg
     2401 cgaagttgtt gactttatcg aattccgggt tgaccccgca acagtggacc aaacgcgcgc
     2461 ccagaccttg tcgcacgaac agcggtcacc ggcagaacgg ggtcagccga ttcctgcgga
     2521 attgatttcc gcggcaggct cgattgccga tcatgatcta cggcagcact ttctccgcgc
     2581 tgcggagaat tgcatcacgc gtcgcgacgt gatcgagtct gaatccggga atccaagata
     2641 ctagttatgc ccatcaccga atctgacatc gaaaggattg cgcaactcgc gcaccttgaa
     2701 atcaccgacg aagaacgccg cgtctttgcg ccgcagatcg ccgacatcgt cacgtatgtc
     2761 gagcaactga acgagattga tacgagcgcg atcgagcccg cgcttggcgg tctcacgctc
     2821 gagggcgagc gcactgcagt cttgcgcagc gacgaagtgc aaccatcctt aggccagagg
     2881 ctggcgcttg atcaggcgcc cgatccggca gcaggccact ttcgcgtgcc gaaagttctg
     2941 ggttagtgca taatcacatc caaacagcac tttgaaacaa tcgccgctca agtcattgca
     3001 cgctgacagc tcgctgaact cgcaaactgt ccaatgaacg gctcattgac tccctcaaac
     3061 caggccaagc gtgttctctg aaagttagac ccgatggtac gcttatcgag ggacatcatc
     3121 gcatcacggt tctccgagaa agaggaatag atgtggactc gctacctcga gagatcgtgc
     3181 ctaagagtta gatatttatg acgagctata agatcgaagg accatggcca ggcaagcttg
     3241 ctatcgttcc tcgtccgcgc gaggcgactg gcttacggat gaagtgcgcg cttggaaaca
     3301 agcgggtttc gacataatgg tatcgctgct aacaaaggac gaatcggacg aattaggttt
     3361 ggccgacgag gcacatctta gtcgtgtgca tggtcttcag ttttgtaact ttccgattcc
     3421 tgatttaggg gttccaaaat catccgcagc ggctcgggaa ctcatcgata aactaaatgg
     3481 agcgcttgcg gcagggaaaa acgttggcat tcattgtcgc cagggaatag gtagatccgg
     3541 tctggttgcg gcgagcctgt tggtagattc aggcgtcgat ccggaaacag cgtttcgtca
     3601 ggtgagtgcc gcgcgcgggc tgcccgtgcc ggaaacatct gatcaaaggg attgggtcct
     3661 agagctagcg cgagaatccg ccgcgtcgct cgtcaaagga taacgaacca taaccccctc
     3721 atgtctgaca gcattgccac acttcgaggc agcatcgcgc gcggcgaaac cacggcgcgc
     3781 gccatcatcg catccgcgct cgatgccgcc gagaagctga acggcaagct caacgcgttt
     3841 ctcgaaatcg atcgcgcggg cgcactggag cgcgctgatg cgatcgacgc gaaaatgaaa
     3901 tcccatgcgc gcgagacgcc cgcgctccca gctctgccgc tggccggcgt gcccatcgcc
     3961 atcaaagaca atatctgcgt gcggggactg cagacgtcct gcggctcgcg catccttggt
     4021 ccctatcatg caccatacaa cgcgacggtg atcgaacgat tgctggcggc cggctcagtg
     4081 attgtcggca agacgaactg cgacgagttt gcgatgggct catcgaacga aaattc
//
LOCUS       DASZZE010000272         1908 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_318661, whole genome shotgun sequence.
ACCESSION   DASZZE010000272 DASZZE010000000
VERSION     DASZZE010000272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1908)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1908)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1908
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_318661"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1038)
                     /locus_tag="VHD88_05250"
     CDS             complement(<1..1038)
                     /locus_tag="VHD88_05250"
                     /inference="COORDINATES: protein motif:HMM:NF024579.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21232.1"
                     /translation="MLDWIRLLLMLCYAPARGMKAVRDRAWLAPAIFTALLAQFLNVI
                     VTQFLAGNRVFLSSGVLFTLTLFQSALTLVPVALILIPLLMVVANIFDRRGSFSVVIT
                     QEYASVASVVFYVLTAVNVGAILIAVFFHFSGIQAAHVANAIQTAPQVRAMFHFGPEV
                     DAQLAQQLSDPRAIAENLFRIVKFVLLGIGLVIAVREVFRVSALRAFAITLVSAIAMI
                     AISPIWGLLFTRVIGSPFLLLMLILFLRGYVTDILKQQRAKAAFNRNLEAATLNPADA
                     SAHYNIGLILQQRGELDAARERFEHAIQIDAEEVDSHYQLGRIARQQKRWADAIKNFE
                     HVVTRDAAHSTH"
     gene            complement(1129..>1908)
                     /gene="lepB"
                     /locus_tag="VHD88_05255"
     CDS             complement(1129..>1908)
                     /gene="lepB"
                     /locus_tag="VHD88_05255"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: protein motif:HMM:TIGR02227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HVS21233.1"
                     /translation="LTSNWTDVCAVESVRGYLSLMFGIRSRRTPPFGGIHVDDDKDIQ
                     IHKPQDVARGNLWAEGRLLLRDLVFALMLAALMVVFVAQPVKVEGTSMLPRLHDGERI
                     FVNKLVYYDEYRWAPKIDRGDIVVFWFPDDPSKSYIKRVIGLPGDTVEVHDGLVRVNG
                     KDLQETYLDPRLNVSHRTQPSVYVRPNYYFVMGDNRDNSSDSRIWGLVPKKYVYGKAL
                     LRYWPLSNVSVIHHENVSPAVPPPTGVRPEFSETQGNNYDQ"
BASE COUNT          447 a          537 c          550 g          374 t
ORIGIN      
        1 atgtgtagaa tgcgccgcgt cgcgcgtcac cacgtgctca aaattcttaa tagcgtccgc
       61 ccaacgcttt tgctggcgcg caatgcgccc gagttgatag tgcgagtcga cctcttccgc
      121 gtcgatttgt atggcgtgct cgaatcgctc gcgcgctgcg tccagttcgc cgcgttgctg
      181 aagaatcaag ccgatgttgt aatgcgccga ggcgtccgcc ggattgagcg tggccgcctc
      241 gaggttgcgg ttgaacgcgg ccttggctcg ctgctgtttc aaaatatcgg taacgtaacc
      301 gcgcagaaaa aggatcagca taagcagcag gaacggcgaa ccgataactc tcgtgaaaag
      361 cagtccccag atcggcgaaa tggcgatcat ggcgatggcc gagaccaggg taatggcgaa
      421 tgcgcgcaga gcggaaacgc gaaacacctc tcgcactgca atcaccaacc cgatgccgag
      481 taaaacaaac ttgactatgc gaaacagatt ctcggcaatg gcccgcgggt cgctgagttg
      541 ttgcgccaac tgcgcgtcga cctcgggccc aaagtgaaac atcgcgcgga cctggggagc
      601 ggtttggatt gcgttggcca catgggccgc ctggataccc gagaagtgaa aaaacaccgc
      661 gatgagaata gcgcccacgt tgacggcagt cagaacgtag aaaaccacag aggcaacgga
      721 tgcatactcc tgagtgatga ccacgctgaa actgccgcgg cggtcgaaga tgttggccac
      781 caccatgagt aatggaatta gaatcagcgc caccggcacc agcgttagcg ccgattggaa
      841 aagcgttagc gtgaagagta cgccgctgga gaggaagacc ctgtttccgg ccaggaactg
      901 ggtcacgatc acgttgagga actgtgccag aagtgcggtg aagattgcgg gcgccagcca
      961 cgctcgatca cgtacggctt tcatcccgcg cgccggcgcg tagcagagca tcaacagcag
     1021 ccgtatccaa tcaagcatcg tgacttcaaa ctctttcagg ggcagaagcc cgaccgttag
     1081 ggagggctcg gagcccttgc ttacgcgcgg gcttctgcca ggtctcaact actggtcgta
     1141 attgttgcct tgcgtctccg agaactcggg ccgcacccct gttggtggcg gcacggcagg
     1201 agaaacattc tcatgatgaa ttacgctgac gttgcttagt ggccagtagc gcaacagcgc
     1261 ctttccatac acgtactttt tcggcaccag tccccagatg cgcgaatcgc tggaattatc
     1321 ccggttgtca cccatgacga agtaatagtt aggcctgacg taaaccgatg gctgcgtgcg
     1381 atgcgatacg ttgaggcgcg gatccagata agtctcttgc aaatctttgc cgttgactcg
     1441 caccagcccg tcgtgaactt ccacggtgtc gcccggcaaa ccgatcaccc gtttgatata
     1501 actcttcgaa ggatcgtcgg gaaaccaaaa gaccacgatg tcgccgcggt cgatcttcgg
     1561 cgcccagcga tactcgtcat agtagacgag tttgttgaca aagatgcgct cgccatcgtg
     1621 caggcgcggc agcattgacg tgccttcgac tttcacgggc tgcgcgacga agacaaccat
     1681 caaggcagcg agcatgagcg cgaagacgag atcgcgcaaa agcaaacgtc cttcggccca
     1741 aaggtttccg cgcgccacat cttgcggctt gtgaatctga atatctttgt cgtcgtcgac
     1801 gtgaatgccg ccaaacggtg gtgtgcgacg actcctgatt ccgaacataa gcgacaggta
     1861 accgcgtact gattcgaccg cacaaacatc ggtccaattc gaggttag
//
LOCUS       DASZZE010000273         3328 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_218119, whole genome shotgun sequence.
ACCESSION   DASZZE010000273 DASZZE010000000
VERSION     DASZZE010000273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3328)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3328)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3328
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_218119"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..471)
                     /locus_tag="VHD88_05260"
     CDS             complement(<1..471)
                     /locus_tag="VHD88_05260"
                     /inference="COORDINATES: protein motif:HMM:NF012879.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HVS21234.1"
                     /translation="MIQTEDFRRQMPAPLAPRPLNIPEPSEARLANGLRLVIVEDRRL
                     PLVNFRLTVRSGDANDPASIPGLSDMMSHLMTEGTETRSSRQIAEDVERLGATLSIGS
                     SSDFTTVAASALSIYAYDVLKLMADVTLRPAFPQSEIDLARENTKQLLIQQRAQP"
     gene            complement(523..1941)
                     /locus_tag="VHD88_05265"
     CDS             complement(523..1941)
                     /locus_tag="VHD88_05265"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HVS21235.1"
                     /translation="MQKTFQVPVTLIEQFTLDNGLRVVLNEDHSVPVVSVAVYYDVGS
                     RNEPEGRTGFAHLFEHMMFQGSENVPKAAHFQHISNAGGTMNGTTSSERTNYFETLPA
                     NQLPLALWLESDRMRSLHVTQENLDNQRNAVQEEKRLRYDNQPYVNGFLRLFEMSFRN
                     HANAHSTIGSMEDLDAATVEDVREFFRIYYAPNNAVLTVAGDFDNAETRRLIDKYFAT
                     IPRQPDPPPVDVSEPDEVAEREDTYLDKLAPVPAFALGWKIPPRRTPDFYALLLASHL
                     LFEGESARLYQKLVKGEESVVQIQGGIDERRGPSGLFIVVIPKPDHDGAQIRAAILQE
                     IKDLAVAGPSDEEMEKLRNNLFNGAVRSRQSSQFRAQQLAEFALYDGDPQLFNTDLHN
                     YLSVTAAQIRDEVKRYLDTNNRVLLEIEPAPQQVAASAPQSPGEPKQPTAPLPQVPPA
                     PAEPTPAANITAQHSTETARDS"
     gene            complement(2134..2565)
                     /locus_tag="VHD88_05270"
     CDS             complement(2134..2565)
                     /locus_tag="VHD88_05270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21236.1"
                     /translation="MSTSVQPQPDNSETKHELIMHEGESDQADERSTVGASVRNIAAR
                     IPEQLSAIGRDISRTIERAISAKDDYMLAVKVSQNAQIKLGQLVQAGVFGTRAEAAAF
                     LIDEGIKTQGALFERVEQKLAEIERLRAELRGLVGEKKDQV"
     gene            complement(2669..3100)
                     /gene="mscL"
                     /locus_tag="VHD88_05275"
     CDS             complement(2669..3100)
                     /gene="mscL"
                     /locus_tag="VHD88_05275"
                     /inference="COORDINATES: protein motif:HMM:NF013869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="large conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HVS21237.1"
                     /translation="MLKEFKEFIARASVIDLAIAVIIGVAFGKIVTSLVEGIIMPPIG
                     LLLGKVDFAGLFYVLNHTKGEPASLADAKAKGIPVIAYGAFINDVVTFVIIAFVIFLV
                     VKIVNRIRQKDPSTKDCPYCLSGIPVKATRCSGCCAELKAA"
BASE COUNT          693 a          903 c          945 g          787 t
ORIGIN      
        1 cggctgggcg cgttgttgga ttagaagctg cttcgtgttc tctcgcgcca gatcgatctc
       61 gctctgcgga aacgccgggc gcaacgtgac atcggccatg agtttcagaa cgtcgtaggc
      121 gtaaatagag agagcggaag cagccacggt ggtgaaatct gaacttgaac caatcgacaa
      181 cgtcgcgccc aggcgctcaa cgtcttcggc aatctgtcgg ctggaacgcg tctcggtacc
      241 ctctgtcatc aaatgcgaca tcatgtcgct aaggcccggg atacttgccg gatcgttcgc
      301 gtcgccggaa cgaacggtca gccgaaaatt caccagcggc aggcgccgat cttccactat
      361 gaccagccgc agcccgttcg cgagcctggc ttcagagggc tcaggtatgt tcagcggcct
      421 cggcgcgagc ggcgcgggca tttggcgacg aaagtcttcg gtttgaatca tgcagcgttg
      481 caagtctctt tagattcgaa aagttgtttt gccagtactc gatcacgaat cgcgtgcagt
      541 ttcggttgaa tgttgcgctg tgatgtttgc cgcgggcgtc ggttcggcag gagctggcgg
      601 cacctgtggt aggggcgccg tcggttgttt cggttcgccg ggagattgtg gcgccgaggc
      661 ggcgacctgt tgcggcgcgg gttcaatttc gagcagcacg cgattgttag tatcgaggta
      721 acgcttcact tcatcgcgaa tctgcgcggc agtcacgctc agatagttgt gcagatccgt
      781 attgaacaac tgcggatcgc cgtcataaag cgcgaactcg gcgagttgct gtgcgcgaaa
      841 ctgcgatgat tgccggctgc gcacagcacc attgaacagg ttgttgcgca acttctccat
      901 ctcttcatcg cttggtccag cgacggcaag atccttaatt tcctgcagaa tcgccgcgcg
      961 aatctgcgcg ccgtcgtggt cgggtttggg aatcaccacg atgaacaaac ctgacgggcc
     1021 tcggcgttcg tcgattccgc cctgaatctg cacgacagat tcttcgcctt tgacgagttt
     1081 ctgatagagg cgcgcgcttt cgccttcgaa caacagatgg ctcgccagca agagcgcgta
     1141 aaagtccggt gttcgccgcg gtggaatttt ccaacccagg gcaaaagccg gaaccggcgc
     1201 cagcttgtca agataagtgt cctcacgttc agcgacctcg tcgggctcgc tcacatcgac
     1261 tggcggcgga tcaggctggc ggggaatcgt cgcgaagtat ttatcaatca agcggcgcgt
     1321 ttcagcgttg tcaaaatctc cggctaccgt cagcactgca ttattgggcg cgtaatagat
     1381 gcgaaagaac tcgcgcacgt cttcgaccgt cgctgcgtca agatcttcca tcgatccgat
     1441 tgtcgagtgc gcgttagcgt ggttgcgaaa actcatttca aacaaacgca gaaacccgtt
     1501 gacgtaaggc tggttgtcat agcgcaaacg cttctcttcc tgcacagcat ttcgctggtt
     1561 gtcgaggttc tcttgcgtca cgtgcagcga tcgcatgcga tcactttcca gccacagcgc
     1621 cagcggcaac tgattcgccg gcagagtctc gaagtaattg gtgcgttcgc tcgaagtcgt
     1681 gccattcatc gtcccgccgg cgttcgagat gtgctgaaag tgagcggcct tcggcacgtt
     1741 ctctgagccc tggaacatca tgtgttcgaa aagatgcgcg aagcccgtgc ggccttcggg
     1801 ttcgttgcgc gagcccacgt cgtaataaac ggccactgac acaaccggaa ccgaatggtc
     1861 ttcgttcaaa accactcgca ggccgttatc gagagtgaat tgttcgatga gtgtaactgg
     1921 aacctggaaa gttttctgca cgtgatggct cgatccgaac cgcgcgacgc ggttagcttg
     1981 aacatcatct tgtagagctt tcaataaaga gtttaccgcg taatggctgc tattcacaaa
     2041 gacgctccac tttgaaagcg tacgctttgc aaaatggagc gaagtgttag tagccctggc
     2101 gaagtctgat gcagtgatta gtcggtcgag cgatcagacc tgatcctttt tctcgccgac
     2161 cagcccgcgc aattcggcgc gcagtctttc gatctctgcg agcttctgct cgacacgttc
     2221 gaacagggcg ccttgcgtct taatgccttc gtcgatcaga aaagcagccg cttcggcgcg
     2281 cgtgccgaac acgccggcct ggaccaattg gccgagcttg atttgcgcgt tctgcgaaac
     2341 cttgaccgcc agcatgtaat catccttggc cgagattgcg cgttcgattg tgcggctgat
     2401 atcgcggccg atcgccgaaa gctgttcggg gatgcgcgcg gctatgttgc gcaccgaagc
     2461 accgacagtg gaacgttcat cagcttgatc agactcgccc tcgtgcatga tcaattcgtg
     2521 ttttgtttcc gaattgtctg gttgcggttg aacagaagtg ctcataagac agttgctcct
     2581 taactttggt aaaaccttgt acgttattct agaggtgcag gttcattcta agaagcacgc
     2641 agaagagcgt caagcaagcc tgcttgccct atgcggcttt caattccgcg cagcagcccg
     2701 aacatcgcgt cgccttcacc ggaatgccgg acaagcagta aggacagtct ttcgttgaag
     2761 gatccttttg tctgatgcga ttgacaatct taacaaccag gaaaatcacg aacgcaatga
     2821 tcacgaaggt tacgacgtcg ttgatgaacg cgccgtaagc gatgacggga attcccttcg
     2881 ccttcgcgtc ggcgagcgaa gcgggttcgc ctttcgtatg gttgagaacg tagaacagac
     2941 cggcaaaatc aactttgccg agcagcaaac cgatgggcgg catgataatt ccttccacga
     3001 gcgacgtgac gatcttgcca aaagcgacgc cgatgattac ggcgatggcg aggtcaatga
     3061 cgcttgcgcg ggcgatgaat tccttgaatt ctttgagcat ctgttttctc ctggtgctag
     3121 aaacgaagta acggctaagc cctctctgac cgccccaccc cagccgggct ggagtcgggc
     3181 tagtgctccg gctctattca ccggcaatct tttgcgagtt tgtatccggc tttttccgct
     3241 tcatctttat ctttgaaggt gacacggctg ccttcgggca cggtctgttg tgcgtggcaa
     3301 tcggacggat aatagagctt tgttttcg
//
LOCUS       DASZZE010000274        10623 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_55368, whole genome shotgun sequence.
ACCESSION   DASZZE010000274 DASZZE010000000
VERSION     DASZZE010000274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 10623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10623
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55368"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..333
                     /locus_tag="VHD88_05280"
     CDS             <1..333
                     /locus_tag="VHD88_05280"
                     /inference="COORDINATES: protein motif:HMM:NF012758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21238.1"
                     /translation="GTSHVDALRLFQEDDETDGIVMIGEIGGTAEEEAAAFAKDNVAK
                     PIVAFIAGQTAPPGRRMGHAGAIIAGGKGTAAEKMAALTDAGIHVVKSPADIGSAMKE
                     ALGASSGA"
     gene            452..871
                     /gene="ndk"
                     /locus_tag="VHD88_05285"
     CDS             452..871
                     /gene="ndk"
                     /locus_tag="VHD88_05285"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: protein motif:HMM:NF001908.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HVS21239.1"
                     /translation="MAGNLTFAIIKPDAVRAGNAGKIIDRITAGGFRIRAMKMIDQSR
                     AQAEGFYEGHRGKPFFAGLTEFMSSAPCIVMVLEKEGAVTAWRDLMGATDPAKADAGT
                     IRKEFGSSVGENATHGSDSDENAAIEIAYFFSKLELV"
     gene            943..1527
                     /locus_tag="VHD88_05290"
     CDS             943..1527
                     /locus_tag="VHD88_05290"
                     /inference="COORDINATES: protein motif:HMM:NF025198.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4190 domain-containing protein"
                     /protein_id="HVS21240.1"
                     /translation="MKRCPTCNQTFDEEWLSFCTQDGTGLIEDSARLSEPPPTVMAPP
                     MPPSVSPNEQPTINLPGSEFTPAPAPRPYNPPQPMQPSWQPPPQPMQSGWQPPPPPAY
                     ANKPKQGLAIASLILGLASVTIGLCCYFGTLTAPVAIILGIISLVQIKNNPTENTGKP
                     LSIIGIVSGALYFVVIAFIILIYGMAFLMQGVNR"
     gene            1615..1905
                     /locus_tag="VHD88_05295"
     CDS             1615..1905
                     /locus_tag="VHD88_05295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21241.1"
                     /translation="MVSDSSASASPEQTPATPTVESGKRELPTTQGHGGLGGKATWSP
                     SQDQIAEIQQYVAASAATATSRRKTWPWVVAILAILFVIIATLVWVLSNRVR"
     gene            1934..2218
                     /locus_tag="VHD88_05300"
     CDS             1934..2218
                     /locus_tag="VHD88_05300"
                     /inference="COORDINATES: protein motif:HMM:NF017451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four helix bundle protein"
                     /protein_id="HVS21242.1"
                     /translation="MDKIELEKRTKQFTLRIIAFAATLPTGRIGDVIRYQLVKAGTGA
                     NYREANRAESRNDFIHKIGIVEKEAAETQYWLELCDEAKLGEATQLAWLL"
     gene            2326..2847
                     /locus_tag="VHD88_05305"
     CDS             2326..2847
                     /locus_tag="VHD88_05305"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit I"
                     /protein_id="HVS21243.1"
                     /translation="MSIISEVIESTRAIIQGMSVTLSYIPKRKQTVQYPDEPVTMQPR
                     YRGQHLLHVDEQGKEKCVACFLCAAACPSDCIYIEAVDDPRTPADRVGVDERYAKVYN
                     IDYGRCIFCGYCVEACPKDAITHGYNFELSVYNRADLLKTKDDLLITKQVQSKNYRVA
                     FSDEDVDSEYKEI"
     gene            2956..4815
                     /locus_tag="VHD88_05310"
     CDS             2956..4815
                     /locus_tag="VHD88_05310"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HVS21244.1"
                     /translation="MPFREFHYRWEFDLESSPEQLWPLVADTNRFNRDTGIPEIEAIS
                     GRGKGLSNARRRLRLFFLGMAVEWEEQPFEWVRPHRFGVVRRYTSGPMAELCMTAELI
                     PGAPTANDNDRETATKLIYQVWAQPKNILGLIAIPVQIGIVSARNFARTFREYDELAK
                     HGRTVASFSPEVEFVPGGRARLLALSEKLAAEGINSELVALLVDHVENADDFALARIR
                     PYELAQQWQQPRRAVLETCLCATRAGILDLQWNLICPMCRGGAATDSLKEIASQVHCP
                     GCNIDFTVNFEQSVELTFRLNPSIREADSENFCIGGPQVTPHIVAQQLLAARSARAID
                     LNLEAGRYRLRTMSLAGWQHLRAGDRGERAVRLRATSDGWPSEELLIAQDADVEFENA
                     TDDEQLFILERAAWSDEAATAAEVTALQVFRDLFASEALRPGEQISVGTLTVLFTDLK
                     ESTRMYREIGDATAFGRVMNHFDVLKQAIANEDGALVKTIGDAVMAVFRQPAAALRAM
                     LHAQQSLASPPDGMLPLKLKAGLHIGPCIAVTLNDRLDYFGSTVNLAARLEGQSTGDD
                     VVISTAVYSDPAVRELLSDPGNGFVATRFEMSLKGFEERFELWRVARASSASV"
     gene            4888..5559
                     /locus_tag="VHD88_05315"
     CDS             4888..5559
                     /locus_tag="VHD88_05315"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HVS21245.1"
                     /translation="MSLIETHEVTRVYQMGTNEVVALDHVSVGVNEGEFVAIQGTSGS
                     GKSTLLNMLGGLDRPTSGEVLFDSQPLGPLTKKQMARYRRHSVGMIFQTFNLIPTMTA
                     AENVRLALAFGGMRGAERGKRAEVLLERVGLSDRMEHRPAELSGGEQQRVAIARALAN
                     RPRVLLADEPTGNLDSTRAHELLALLREMVDSDKLTVLLVTHDHELATSFANRIILMK
                     DGRVM"
     gene            5625..6524
                     /locus_tag="VHD88_05320"
     CDS             5625..6524
                     /locus_tag="VHD88_05320"
                     /inference="COORDINATES: protein motif:HMM:NF017970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1003 domain-containing protein"
                     /protein_id="HVS21246.1"
                     /translation="MPNQNPPVMTLDAIRSVPLFASLDDAAARELRDLLRTREVRSGT
                     TLFRAGDKGDAMFLIERGRIRIAVTDDDKKEIVLAELAQGDFFGEMAIIDGKQRSAGA
                     AVIEDAILAVLSRDDFLRFIRNNPTVALEMLSATFSRLRSTDKMLQQRVSRNVNEEQK
                     KRMTLADRAADTLAEFGGSWKFIGAAVGIIISWIVFNSYILIRGFDPAPYQMLNLVMG
                     IIAGLQAPIIMMSQNRQSGKDRLRSDLDYQVNLKNEIALNEVLRRLDVLESERLPLLF
                     AEQNERMDKLKLPPRIASGQSAP"
     gene            6525..7229
                     /locus_tag="VHD88_05325"
     CDS             6525..7229
                     /locus_tag="VHD88_05325"
                     /inference="COORDINATES: protein motif:HMM:NF024811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HVS21247.1"
                     /translation="MIQAIFFDFNGVISDDERIHLNAYREVLTSEGLDLTDDDYFACL
                     GMDDVTFVRAAFARGKHALTDETLHELIKREHELHRKAIEDDLPVSSGVVSFIKEAAR
                     RYPLGVVSMAVRAEIDHVLRRAGLEDCFAVIVSAGEVTRHKPAPDSYQRALELLNEKC
                     RAERELPLLAKECLVIEDAPPGIEAARAAGMHTIGVTNTVSESQLRAAGADIVTASLA
                     DWGVDAVHHLFDLEKL"
     gene            7226..8716
                     /locus_tag="VHD88_05330"
     CDS             7226..8716
                     /locus_tag="VHD88_05330"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HVS21248.1"
                     /translation="MSFYDLLRLSFRNLREAKLRATLTSMGVIVGVAVIVTMVSFGLG
                     LQRNLLSRFKALDLFNEISVFGRGLGSLASSGFDRNAPRNTGEGGARRGPRFRPDKNP
                     TRVLDDAAIAEIAKIPGVAYVEPTLGFVVYLRSNGRAFLRNVSGANVPNSSSRFKEFV
                     AGKMISTPTADEAVVSESFASDFGYDKPADAVGKTLEFLTPESEGKTQKADQKQSDEE
                     GPPNFFGLPLDENGTDQAKAPALVAHTFVIAGVLNTEVKEGPGQGGLRGLMPGAEVYI
                     SLPTAHQWTLEHRSQFGQVALALARESGNLKEGEAEAYPAAVVRVDNPVALTEVRKRL
                     TELGFGSFSIVDQLEQIRTVFLIIDSVLGLLGGISLLVASFGIANTMIMSILERTREI
                     GIMKAIGAEDREIKLIFFFEAAVIGLTGGVIGALAAWGIDGVANRLAYRFILKPQGAS
                     FVDFFSLPPYLWLGAILFALVVSILAALYPAARAARIDPVRALRHD"
     gene            complement(8812..9390)
                     /locus_tag="VHD88_05335"
     CDS             complement(8812..9390)
                     /locus_tag="VHD88_05335"
                     /inference="COORDINATES: protein motif:HMM:NF024183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HVS21249.1"
                     /translation="MESRYYPGVEADVIKLTTELRSLFDEDFDVQTMQVSSTAVLQAR
                     KSSTLREITGLSAALTIKVTPETGGTRVEIGMQKWFDKAAVAAIALVLSAGLLIVLPA
                     LGAYWQYKLTEDAWKIIEDHIARKAGGYVPPLPGRCGTCGTAASAGSTYCSSCGANLR
                     AGLTCASCNAVQRDPSARFCNSCGKPLAASHR"
     gene            9484..>10623
                     /locus_tag="VHD88_05340"
     CDS             9484..>10623
                     /locus_tag="VHD88_05340"
                     /inference="COORDINATES: protein motif:HMM:NF014301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PA domain-containing protein"
                     /protein_id="HVS21250.1"
                     /translation="MRKLVRRSFAFSFLLTVVAVQSIGLAQNRSDASVLDGFAPQLSA
                     TERNFEEQFRAVPSPATAREELRRLTVEAHIAGSPEDYATAVYVRDQMRSFGLESELR
                     EYQVLLPFPRTPSIVELVAPRHERLQVREDVIPEDPSSSSKKIVPLYNGYGATGDITT
                     SLVYVNYGLPKDYEALKTAGVDVKGKIAIARYGNSFRGVKAKVAEDNGAIGLIIYSDP
                     ADDGYMQGDVYPKGPWRPDSSAQRGSVEFLFIYPGDPLTPGVPSVPGTPRIKKEEALN
                     LPHIPVQPISYGDARRLLQPLRGPLRPKGFQGGLPFPYHLGGTGDVRVHLKTDIEFVT
                     KTIWDVITRIDGAEQKDRWVVLGNHRDAWVFGAVDPNSGTTAMLEL"
BASE COUNT         2316 a         2858 c         3192 g         2257 t
ORIGIN      
        1 ggcacttcgc atgttgatgc tttgcgatta tttcaagaag atgacgagac cgacggcatt
       61 gtcatgattg gcgagattgg cggcacagcg gaagaggaag cagcggcgtt cgcgaaagac
      121 aacgtggcga aaccaatcgt cgctttcatc gccggacaaa ccgcgccgcc gggtcgtcgc
      181 atgggccacg ctggagcgat catcgccggc gggaagggaa ctgccgcgga aaaaatggcc
      241 gcgcttactg atgcgggcat tcacgtggtg aagtcgccgg cagatattgg atcggcaatg
      301 aaggaagcgc tgggcgcaag ctcgggagca taagacattt cggccacaga tttgcacgga
      361 tacgcgcaga tcagaaaaac aacaagagcc agtgaagtta gcttaatctg tgttcatcgg
      421 tgtgaatctg tggcgcattc agagggaatt gatggcaggt aatcttacat tcgcaatcat
      481 caagcccgac gcagtgcgcg cgggtaacgc cggaaagatc atcgatcgca tcacggccgg
      541 cggctttcgc attcgcgcga tgaaaatgat tgatcagtcg cgcgcgcaag ccgaaggctt
      601 ctacgaagga catcgcggca aaccgttctt tgcgggcttg acggaattca tgtccagcgc
      661 gccatgcatc gtgatggttt tggagaaaga aggcgcggtg acagcgtggc gcgatctcat
      721 gggcgcaacg gatccggcca aagccgacgc cggaactatt cgcaaagagt tcggctcgtc
      781 agtcggcgag aacgcgacgc atggctcgga ctctgacgag aacgccgcga tcgagattgc
      841 atattttttc agtaagcttg aactggttta gaggcggcac ttgtgctgcc taagaatgcg
      901 atccgccaga caagtctggc gtctaaacga attcgaggcg agatgaaacg ctgtccgact
      961 tgcaaccaaa cgttcgacga agaatggctg agcttctgca ctcaggatgg cacgggctta
     1021 attgaagact cggcccgact cagcgaaccg ccgccgacgg tgatggcgcc gcccatgcca
     1081 ccgagcgtca gtccgaacga acaaccgacg atcaatcttc cgggtagcga attcacgccg
     1141 gcgcccgcac cgaggccata caacccaccg caaccgatgc agccgtcatg gcagccgcct
     1201 ccacaaccga tgcaatctgg ctggcaaccg ccaccgccgc ccgcatacgc caacaaaccg
     1261 aaacagggtc tcgcgatcgc gtcgcttatt ttggggctgg ccagtgtcac tatcgggttg
     1321 tgttgttatt tcggcacgct cacagctccg gtagcgataa tccttggcat tatctcgctg
     1381 gtgcagataa agaataaccc caccgagaat actggaaagc cgctaagcat tatcgggata
     1441 gtgagtggtg ccctctattt tgtggtaatc gcgttcataa tcttgattta cgggatggcc
     1501 tttctgatgc agggcgtgaa tcgatagagg ggtcttacag tgaaacgctg cccccacttg
     1561 tgaataaaca ttcgatgacg ccacgctgac cttttcctgg ctgatgggac acggttggta
     1621 agcgacagtt cggcatcggc aagtcctgaa caaactcccg caacgccgac tgtcgaaagc
     1681 ggcaagcgcg aattgccgac gacgcaagga catggtggac tcggaggcaa ggcgacatgg
     1741 agcccttcgc aagatcaaat cgcggagatt cagcaatacg ttgccgcttc cgccgccact
     1801 gccacgagcc ggcgcaagac ttggccctgg gtcgttgcga tcctcgcgat tctatttgtg
     1861 attatcgcga cgctagtgtg ggttctgtcg aatcgggtaa gataattgcg aatctcggat
     1921 tgcgaattgc gaaatggata agatcgagtt agagaaaaga acgaaacagt ttacgctgcg
     1981 gattatagcg tttgcggcaa cgttgccgac gggaaggatc ggcgatgtga tcagatacca
     2041 actagtcaag gccggaacag gggcgaacta tcgtgaggca aaccgggccg aatcccgaaa
     2101 tgacttcatt cacaagattg gcattgtcga aaaggaagct gccgagacgc agtactggtt
     2161 ggaattatgc gacgaggcca aactcggtga agcaacgcag ctcgcatggc tcttgtaaga
     2221 gtccggcgaa ctcttggcaa tctttacccg atcggggaga acagcaaaag cagcgagagc
     2281 atagcatttc gaaatccgca attcgcaatt cgaaatctgc aaactatgtc aatcatcagt
     2341 gaagtaatag aatcgacgcg cgcgatcatt caagggatga gcgtgacgct gtcttacatt
     2401 cccaagcgta agcaaacagt tcaatatccc gacgagccgg tgacaatgca gccgcgttat
     2461 cgcggccagc atttgcttca cgttgacgag cagggaaaag agaagtgcgt ggcttgtttt
     2521 ctttgcgccg cggcgtgccc gtcggattgc atctacatcg aagcggttga cgatccgcgg
     2581 acgcccgcgg atcgcgtcgg cgtcgacgag cgctatgcaa aggtttacaa catcgattac
     2641 ggtcgctgca ttttttgtgg ctactgcgtc gaggcctgcc cgaaagacgc gatcacgcac
     2701 ggctacaact ttgaactttc ggtttacaac cgcgccgatt tgttgaagac aaaagacgac
     2761 ttgttaatta ccaagcaggt gcagtcaaag aattaccgcg tcgccttctc agacgaggac
     2821 gtggattcgg aatataagga aatctagaac ataggttata ggttaagggg aaagggcaaa
     2881 gggcaaaggt gacggtgcct ttgccttttc ctttaccctt ttcccattca ccttttaccc
     2941 ttattctttt ctgctatgcc ctttcgcgag tttcattacc gctgggaatt cgatctcgaa
     3001 tcgtcgcccg agcagctctg gccgctcgtg gccgacacga atcgcttcaa tcgcgacaca
     3061 ggcattcccg agatcgaagc gatctcgggc agaggcaagg gcttgagcaa cgcgcgccgt
     3121 cgcttgcgac tgttctttct tggcatggcg gtcgaatggg aggaacagcc gttcgagtgg
     3181 gtgcgcccgc atcgttttgg cgtcgtgcga cgctacacca gcggcccgat ggccgagttg
     3241 tgcatgactg ctgagctaat tccaggtgcg ccgaccgcaa atgataacga ccgcgagact
     3301 gcaacgaagt tgatctatca ggtttgggct cagccgaaaa acatcctcgg actgattgct
     3361 attccggttc agattggcat agtgagcgca cgaaactttg cgcgcacgtt tcgcgaatat
     3421 gacgagctgg cgaaacatgg acgcacggtg gcgagctttt cgccggaagt tgaattcgtt
     3481 cccggcgggc gagcgcgttt gctcgcgctc agcgaaaagc tggccgccga aggaatcaat
     3541 agcgagttag tcgcgttgct ggtcgatcac gtcgagaacg ccgacgattt cgcgctcgcg
     3601 cggatcaggc cgtacgaact cgcgcagcaa tggcaacagc cacgccgcgc agttttagag
     3661 acctgtctgt gcgcgacccg cgcaggaatt ctggatctgc agtggaacct gatctgcccg
     3721 atgtgtcgcg gcggcgcggc gactgactcg ttgaaagaga tcgcttcgca ggttcactgt
     3781 ccgggctgca acatcgattt caccgttaac tttgaacagt cggtcgagct gactttccgg
     3841 ctgaatccgt cgattcgcga agccgacagc gagaactttt gcatcggcgg cccgcaagtg
     3901 actccgcaca tcgtcgcgca gcaactgctc gcggcgcgca gcgcgcgcgc aatcgacctg
     3961 aatctcgaag caggacgtta tcgtttgcgc acgatgagtt tggcgggctg gcagcatctg
     4021 cgtgcaggcg accgaggcga gcgcgccgta agactgcggg cgacgagtga tggttggccc
     4081 agtgaagaac tcttgattgc gcaggacgct gacgtcgagt ttgagaacgc aaccgacgac
     4141 gagcagttgt tcatactcga acgcgccgcg tggagcgatg aagcagcgac ggccgccgag
     4201 gtgacggcgt tgcaagtctt tcgcgacctg ttcgcgagcg aagcgctgcg accgggcgaa
     4261 caaatttccg tcggcacgtt gaccgtgttg ttcacggatt tgaaagagtc aacgcgaatg
     4321 tatcgcgaga ttggcgatgc gacggcgttt ggacgcgtca tgaatcactt cgatgttctg
     4381 aaacaggcaa tcgccaacga agacggcgcg cttgtcaaaa caatcggcga tgcggtgatg
     4441 gcggtgtttc ggcagcccgc agccgcactg cgcgcgatgc tgcatgcgca gcaaagcctt
     4501 gcgtctccgc cggacggaat gttgccgctc aagttgaaag ctggattgca catcggtccg
     4561 tgcatagccg tgacgctgaa cgatcggctt gattattttg gctcgaccgt gaatctggct
     4621 gcgcgtctgg aagggcaatc gaccggcgac gatgtcgtaa tctcgactgc tgtctattcc
     4681 gatccggcag tgcgcgagct tctgagcgat cccggcaacg gcttcgtggc cacgcgtttt
     4741 gaaatgtcgc tgaagggatt cgaagagcgg ttcgaacttt ggagagtggc gcgcgcgagt
     4801 tccgcgagcg tttagaggcc ggacttgtcc ggccacattc ggaggccaga ggacaagtcc
     4861 tctgtctaaa caaaatcgaa agagcttatg tcgttaatcg aaactcacga ggtcacgcgc
     4921 gtctatcaga tgggaaccaa tgaagtggtt gccttggatc acgtgtcagt tggcgtgaac
     4981 gaaggcgagt ttgtggcgat tcagggaaca tcggggagcg gcaaatcgac tctgttgaat
     5041 atgctcggcg gactcgatcg cccaaccagc ggcgaagtgc ttttcgattc gcagccgctc
     5101 ggaccgttga ccaaaaagca gatggcgcgc tatcgccgtc actcggtggg aatgatcttt
     5161 cagaccttca atctgattcc gacgatgacc gcagccgaga acgtgcggct cgcgctggcg
     5221 ttcggcggta tgcgcggcgc tgagcgcgga aagcgcgccg aagtcttgct tgagcgcgtc
     5281 ggtctttctg atcgaatgga gcatcggccc gccgaactgt ctggaggtga gcagcagcgc
     5341 gtggcaatcg cgcgcgcgtt ggcgaaccgt ccgcgcgttt tgcttgccga cgagccgacc
     5401 gggaatttag actcgacgcg cgcgcacgag ttgctagcgc tgttgcgcga aatggtcgat
     5461 agcgacaagc tgacggtgct gctggtaact cacgatcacg agctggcaac tagctttgcg
     5521 aacaggatca ttctgatgaa agatggacga gttatgtagt gcaagttgtt aacttgcatc
     5581 tgcgcaagct ggcggcttgc gctacatttg cgaggtaaaa catcatgcca aaccaaaatc
     5641 ctcccgtgat gacgctggat gcaattcgtt ctgttccgct tttcgcatcg cttgacgacg
     5701 cggccgcgcg cgagttgcgc gacctgctgc gcacacgcga agtccgtagc ggcactacgc
     5761 tctttcgtgc cggtgacaaa ggcgacgcga tgttcttgat cgagcgcggt cgaatacgta
     5821 tcgctgttac cgacgacgac aagaaggaga tcgtcctcgc tgagttggca caaggcgatt
     5881 tctttggcga gatggcgatc atcgacggca agcaacgatc cgccggcgcc gcggtcatcg
     5941 aagacgcgat actcgcagtg ctttcgcgag atgactttct gcgattcatc cgcaacaacc
     6001 cgacggtagc gctggaaatg ctgagcgcga ctttctcgcg attgcgaagc accgacaaga
     6061 tgttgcagca gcgcgtctct cgcaatgtca acgaagaaca gaagaagcgc atgacgctcg
     6121 ccgatcgcgc ggctgatact ctcgcggagt tcggcggcag ttggaaattt atcggcgccg
     6181 ccgtgggcat catcatctcg tggatcgtgt tcaattccta cattttgatc cgcggatttg
     6241 acccggcgcc gtaccaaatg ctcaacctgg ttatgggaat aattgccggc ttacaagcgc
     6301 cgattatcat gatgtcgcag aatcggcagt cgggaaaaga tcgtctgcgc tcggaccttg
     6361 attaccaggt gaatctgaaa aatgaaattg cgctgaatga agttttgcgc cggctcgatg
     6421 tgctggaaag cgagcgactg ccgctgttgt tcgccgaaca gaacgagcgc atggacaaac
     6481 tgaaactgcc gccacggata gcgtcaggcc aaagcgctcc ttaaatgatt caagcgatct
     6541 ttttcgactt caacggcgtc atcagcgacg acgagcggat tcatctgaac gcctatcgcg
     6601 aagtgctcac cagcgaaggc ttggatctca cggatgacga ttacttcgcc tgtctcggga
     6661 tggacgatgt cactttcgtg cgcgccgctt tcgctcgcgg caagcacgcg ttgaccgacg
     6721 aaacgttgca tgagctgatc aagcgcgaac acgaactgca tcgcaaggca atcgaggatg
     6781 acttgccggt ttcgtccgga gtcgtctcct ttattaaaga agcggcgcgc cgctatccac
     6841 tcggtgtggt tagcatggcg gtgcgcgctg agattgatca tgtacttcgg cgtgcgggcc
     6901 tcgaagattg ttttgcggtc attgtcagcg ccggcgaggt gacgcggcac aaacccgcgc
     6961 ccgatagtta tcagcgcgca ttggagttgc tgaacgagaa gtgtcgcgct gagcgcgagc
     7021 tgccgttgct cgcgaaagaa tgtctggtga tcgaagacgc gccgccggga atcgaagccg
     7081 cccgcgccgc cggcatgcac accattggcg tgacgaatac ggtttcggag agtcagttgc
     7141 gcgcggcagg ggccgacatc gtcaccgcga gtctcgctga ttggggtgtc gacgcggtgc
     7201 atcacttgtt cgacttggaa aagttatgag tttctacgat cttcttcgtc tttcttttcg
     7261 caacttgcgc gaagccaagc tgcgcgcgac gctgacttca atgggtgtga ttgtgggcgt
     7321 ggcggtgatc gtgacgatgg tttcgtttgg gctgggtttg cagcgcaatc tactgtcgcg
     7381 tttcaaggct ctcgacctct tcaacgaaat tagcgtgttc gggcgcggcc tcggcagtct
     7441 ggcttcgtct gggtttgatc gtaacgcgcc caggaatacc ggtgagggtg gggcccgtcg
     7501 cggcccgcgt ttccggccgg acaaaaatcc cactcgcgtt ttggacgatg ccgcaattgc
     7561 cgaaatcgcg aagattcccg gcgtcgctta cgtcgagccc acactcggct ttgttgtcta
     7621 tcttcgatcg aacggccgcg ccttcctgag aaatgtttcc ggcgcaaacg tgcccaactc
     7681 gtcgtcacgt tttaaagagt tcgttgccgg caagatgatc tcgacgccga ctgccgacga
     7741 agctgtcgtc agcgaatcgt ttgcaagcga ctttggttac gacaaacccg ctgacgccgt
     7801 gggcaagacg cttgagttcc tgacaccgga gagcgagggc aagacgcaga aagcggatca
     7861 aaagcaatct gacgaggaag gtccgccaaa cttttttggc cttccgctcg acgaaaacgg
     7921 aactgaccag gcgaaagctc cggctctagt cgcgcacact tttgtgattg ccggcgtctt
     7981 gaacactgaa gtgaaagaag ggccaggaca gggaggcctg cgcggactga tgcccggagc
     8041 ggaagtttac atttcgttgc cgacggccca tcagtggacc cttgaacatc gcagccaatt
     8101 tggccaggta gcgcttgccc tcgcgcgcga aagcggaaac ttgaaagaag gagaagcaga
     8161 agcgtatccg gcggccgtcg tccgcgttga caatccggtt gcgctgaccg aggtgcgaaa
     8221 gcggctaaca gaactcggct tcggcagctt ctcgatcgtc gatcagttgg aacagattcg
     8281 cactgtcttt ctgattattg attcggtctt gggattgctc ggcggcatct cgcttctggt
     8341 cgcaagtttc ggaatcgcta acacgatgat catgtcgatc ctcgaacgca cgcgcgagat
     8401 tggcatcatg aaagcaatcg gcgccgaaga ccgcgagatc aaactcatct tcttttttga
     8461 agccgccgtg attgggctga ccggcggcgt gatcggagca ctggcggcgt gggggatcga
     8521 cggcgtggcc aatcggctgg cgtatcgctt catcttgaag ccgcagggcg catcgttcgt
     8581 tgatttcttt tcactgcccc cgtatttgtg gctgggcgcg attctgttcg cgttggttgt
     8641 ttcgatcctc gcggcgctgt atcccgccgc gcgagccgcg cgcattgatc cggtgagggc
     8701 gctcagacat gactagccac agatgaacac ggatggacac agatcaaaac taacaggaat
     8761 catacatgct ggcggtgaca attgatttgc tgaatccgtg cagatccgtg ttcatctgtg
     8821 gctagctgcc agcggtttgc cacacgagtt gcaaaaccgc gcgcttggat ccctctgcac
     8881 cgcgttgcac gatgcgcagg tgaggccggc gcgcagattc gcgccgcacg aagaacagta
     8941 ggtcgagccg gcactcgcgg ctgtgccgca ggtaccgcag cgaccgggca gaggcggaac
     9001 gtagccgccg gctttgcgcg cgatgtgatc ttcgattatc ttccacgcgt cttcagtgag
     9061 tttgtattgc cagtaagcgc cgagcgccgg cagcacgatc agcaaacccg cggacagcac
     9121 cagcgcaatg gcggcgaccg ctgctttgtc gaaccacttc tgcatgccga tctcgacgcg
     9181 tgtgccgccc gtctcaggtg tgactttgat tgtgagcgcg gcagagagtc cggtgatttc
     9241 gcgcaacgtg ctagacttgc gcgcttgcag cacggccgtt gatgaaactt gcatcgtctg
     9301 aacgtcgaag tcttcatcaa agaggcttcg aagttcagtt gtcagcttga taacgtcggc
     9361 ttcgacgccg ggataatagc ggctttccat ttgtacagtt tctccttgcg tcagtttacg
     9421 cgcggacagc tatgattgtt caatgaaatc gccacagaga cacagagaga cggagacgaa
     9481 tcaatgagaa aattggtaag acggagtttt gcgttctcct ttttgttgac ggtggttgcc
     9541 gttcagtcga tcgggctcgc ccagaaccga agcgacgcat cagtgcttga cgggtttgca
     9601 ccacagcttt ccgccactga gcgcaacttc gaagaacagt ttcgcgcggt gccttctccg
     9661 gcaactgcgc gcgaagagtt gcgacgattg actgtggagg cgcacatcgc cggctcgccg
     9721 gaagactatg ccaccgcggt ttacgtgcgc gatcaaatgc ggagctttgg actcgagtcc
     9781 gagttgaggg agtatcaggt gctgctgcca tttccgcgca cgccgagcat cgtcgagttg
     9841 gttgcgccgc gacatgaacg tctgcaagtc cgagaggatg tcataccgga agatccgtcg
     9901 tcgtcgagca aaaagatcgt gccgctttac aacggctatg gcgcgacggg cgatatcacc
     9961 acgtcgttag tttacgtcaa ctacggactg ccgaaagact acgaagcgtt gaagaccgcc
    10021 ggcgtggacg tgaagggaaa gatcgccatc gcgcgttacg gcaattcgtt tcgcggtgtc
    10081 aaggcaaagg ttgcggaaga caacggcgct atcggcctaa tcatttattc cgacccagcc
    10141 gacgatggtt acatgcaagg cgatgtctat ccgaaagggc cgtggcgtcc agacagttcg
    10201 gcgcagcgcg gctcggttga gtttctcttt atttatccgg gtgatcctct gacgccgggc
    10261 gtgccgtcgg tccccggcac accgcgcata aaaaaagagg aagcgctgaa cctgccgcac
    10321 attccggtgc agccgatctc gtacggcgac gcgcgacgtt tactgcaacc cttgcgtggt
    10381 ccattgcgac cgaagggttt tcagggcggc ttgccgtttc catatcacct cggcggcacc
    10441 ggcgacgtgc gcgtccatct gaaaaccgat atcgagttcg tgacgaagac gatctgggac
    10501 gtgatcacgc gcatcgatgg cgctgagcaa aaggatcgct gggtcgtgct cggtaatcat
    10561 cgtgacgcat gggtcttcgg cgcagtcgat ccgaacagcg gcacgaccgc gatgctcgaa
    10621 ctc
//
LOCUS       DASZZE010000275         1659 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_123267, whole genome shotgun sequence.
ACCESSION   DASZZE010000275 DASZZE010000000
VERSION     DASZZE010000275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1659)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1659)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1659
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_123267"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1659)
                     /locus_tag="VHD88_05345"
     CDS             complement(<1..>1659)
                     /locus_tag="VHD88_05345"
                     /inference="COORDINATES: protein motif:HMM:NF016448.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21251.1"
                     /translation="SFRDEDLLRAFYTVDEVRVEDGRLMVQVPETGTTNLTGMKVDFD
                     IKGRGPDPIVRKGKEITRTSLEGLRKANIGEVEIDPAQFEGAYAVADIVNTETGEVIL
                     EANNEITSAKLQEIAESGVTSFSVFFPERDDVGVVISQTLKKDTISKPVDALLEIYRK
                     MRPGDPPTVQTAYRLLEGMFFDPRKFDFSRVGRLKFNIKMGKPEMLRIEDPLLAASDF
                     FEVVSYVLKMRRNPVDDQKKPIYQADDIDHLGNRRVRAVGELLENQFRIGLERMERAI
                     KEKMSIHQEMQTTMPRDLINAKPVTAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSA
                     LGPGGLSRERAGFEVRDVHPTHYGRICPIETPEGPNIGLISSLSCYARINEFGFIESP
                     YRKVVDGKVVEFVRVINGGDTKFKPNDHVPQDGVDKANKRVGSGEKAIYEPFPFYLTA
                     WEEDKHVVGQANIQLDENSYIVNDRNAARKAGEFILAQRDEIEFVDVSPKQLVSVAAS
                     LIPFLENDDANRALMGSNMQRQSVPLLRAEAPYISTGMEDVTAR"
BASE COUNT          346 a          495 c          440 g          378 t
ORIGIN      
        1 tcgcgagcgg ttacgtcttc cattcccgtg ctgatgtaag gcgcttcggc gcgcagcaat
       61 ggcaccgact gacgctgcat gttcgaaccc atcagcgccc ggttcgcgtc atcgttctca
      121 aggaacggga tcagcgacgc ggccacggaa accaactgct tcggcgagac gtccacgaat
      181 tcgatctcgt cacgctgggc cagaataaat tcgccggcct tacgcgctgc gttacggtcg
      241 ttgacgatgt aactgttttc gtcgagctgg atattggcct gaccaactac gtgcttgtct
      301 tcttcccagg cggttaaata aaacggaaaa ggttcgtaga tcgccttttc gccggagccg
      361 acgcgcttgt tggctttatc gacgccatcc tgtggcacat ggtcgttggg cttgaacttc
      421 gtatcgccac cgttgatgac ccgcacaaac tcaaccacct tgccgtcgac aactttccga
      481 taaggcgatt caatgaaacc gaattcattg atgcgcgcat agcacgacag cgacgaaatc
      541 aacccgatgt tcggaccttc aggcgtctcg atcgggcaaa tgcgaccata gtgagtcggg
      601 tgcacgtcgc gcacttcgaa tccggcgcgt tcgcggctca acccgccagg tcccagggcg
      661 gacaaacggc gcttgtgagt aatctcagag agcggattgg tctgatccat gaactgcgac
      721 aactgagacg agccaaagaa ctcacgcacc gcagccgtga ccggcttggc attgatgaga
      781 tcacgcggca tcgtcgtctg catctcctga tggatcgaca ttttttcttt gatcgcgcgc
      841 tccatgcgct cgagtccgat gcgaaactga ttttccagca actcgccgac cgcccggacg
      901 cggcgattgc ccagatgatc gatatcgtca gcctgataga tcggcttctt ctggtcatcg
      961 accgggttcc ggcgcatctt caagacgtag gacacgactt caaagaagtc gctcgccgcc
     1021 agcagcggat cctcgatccg gagcatttcg ggcttgccca tcttgatgtt aaatttcaaa
     1081 cggcccacgc gcgagaaatc gaacttgcgc gggtcgaaga acatgccttc gagcagacga
     1141 taggcggtct gcaccgtcgg cggatcgcca gggcgcatct tgcggtaaat ctccagcagg
     1201 gcatcgacag gcttgctgat cgtgtccttc ttcaaggtct gcgaaataac cacgcccacg
     1261 tcgtcgcgct cggggaagaa tactgagaag ctcgttactc cgctttcggc aatctcctgc
     1321 agcttagccg aggtgatttc attattggct tcgagaatca cttccccggt ttcggtgttg
     1381 acgatgtcgg caaccgcgta ggcgccctcg aattgcgccg gatcgatttc cacttcacca
     1441 atgttcgctt tgcgcaagcc ctcaagcgat gtcctggtaa tttctttgcc cttgcggaca
     1501 atcggatcag gaccgcggcc cttgatgtcg aaatctacct tcatcccggt caagttcgtc
     1561 gttcccgttt ccggaacctg caccatcaag cgcccatctt cgacgcgcac ttcatcgacc
     1621 gtgtagaagg cgcgcagcag atcttcatct ctgaatgaa
//
LOCUS       DASZZE010000276         3315 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_189773, whole genome shotgun sequence.
ACCESSION   DASZZE010000276 DASZZE010000000
VERSION     DASZZE010000276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3315)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3315)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3315
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_189773"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..217
                     /locus_tag="VHD88_05350"
     CDS             <1..217
                     /locus_tag="VHD88_05350"
                     /inference="COORDINATES: protein motif:HMM:NF012626.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21252.1"
                     /translation="EKRPFDQLPNVQRLAGEVERELGNRGRLLLRYSGTESLARVMIE
                     GESESEIKVQAHALAEAIQAELSAAES"
     gene            619..1398
                     /locus_tag="VHD88_05355"
     CDS             619..1398
                     /locus_tag="VHD88_05355"
                     /inference="COORDINATES: protein motif:HMM:NF024299.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HVS21253.1"
                     /translation="MATSLAISSATRKLLVVTAALFCVLVTCACHRSSGKGANANDNT
                     TSSSLSDAEQSKREAQSLVEKGKDLYKNDQDERAAEAFQQAIRLQPDLAEAHLGLGMA
                     YAALEKKTEADDSYKKAIELYKKVVQSDPKDGEAFFNLGQAHSFLHQDEEAARAFRQA
                     SHLRPDDEEAFYQLGKAEIRLAHYPEAVTAFQKALELDPDDQRATDELDNAREGSKRI
                     QEGKKHAEDMLKKQQENQNANGNVNANPRSRPSPKPRLRRF"
     gene            1422..1595
                     /locus_tag="VHD88_05360"
     CDS             1422..1595
                     /locus_tag="VHD88_05360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21254.1"
                     /translation="MATYTPPPYFPQSSLSPPDKNRYRKFKVAVFAVVFALLFVVGGI
                     IVGAVYVIKWLAR"
     gene            2051..2434
                     /gene="rpsL"
                     /locus_tag="VHD88_05365"
     CDS             2051..2434
                     /gene="rpsL"
                     /locus_tag="VHD88_05365"
                     /inference="COORDINATES: protein motif:HMM:TIGR00981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HVS21255.1"
                     /translation="MPTINQLVRKGRQKVKYKTASPALQSSPQKRGVCTRVYTQTPKK
                     PNSALRKVARVRLTNGIEVTTYIPGVGHNLQEHSIVLIRGGRVKDLPGVRYHVIRGTL
                     DSVGVSDRKQSRSKYGAKRPKGGAK"
     gene            2438..2908
                     /gene="rpsG"
                     /locus_tag="VHD88_05370"
     CDS             2438..2908
                     /gene="rpsG"
                     /locus_tag="VHD88_05370"
                     /inference="COORDINATES: protein motif:HMM:TIGR01029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HVS21256.1"
                     /translation="MPRRRVAERRAVLPDPVYNSALVTKFINGIMWGGKRSIAERTFY
                     DALRQVGEKAGDEPLKLFKRAIENVRPTVEVKSRRVGGSTYQVPVEVHQERRGALAIR
                     WIVAYARGRGEKTMTDRLAGELLDAANNRGNAVKKKDDTHRMADANKAFAHYKW"
     gene            2977..>3315
                     /locus_tag="VHD88_05375"
     CDS             2977..>3315
                     /locus_tag="VHD88_05375"
                     /inference="COORDINATES: protein motif:HMM:NF012239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HVS21257.1"
                     /translation="MAKYDLNTFRNIGIMAHIDAGKTTTTERVLYYTGVSHKIGEVHE
                     GTATMDWMEQEQERGITITSAATTCFWERNGQDFRINIIDTPGHVDFTMEVERSLRVL
                     DGAVAVFDGVA"
BASE COUNT          814 a          862 c          969 g          670 t
ORIGIN      
        1 cgagaaaaga ccgttcgacc aactgccaaa cgttcagcga ctggcaggcg aggtcgaacg
       61 agaacttggc aatcgcggtc gattgttgct gcgctactcc ggcactgagt ctttggcgcg
      121 agtcatgatc gaaggcgaga gcgaaagcga gatcaaggtg caggctcatg cgctggcaga
      181 agcgatccaa gccgaactca gcgccgcgga atcgtaagtc gttagaccct cgtgatgatc
      241 gacaagtcgc acagagcctc atcgagaaat tcttacaatg tggaccatga aatagttgca
      301 cttgcgagcg tcgttagcag cggagagacc aagcaaatgg caagtttttg tgggtttctt
      361 gatgcgaaag aatcacttat tgcgcggcat aagtgttgcg ctgtatattg tggggcaaga
      421 gagacggttg gtggatcctc cgtctcaagt ggttgctggg gtgaggacag taaccacgaa
      481 aatggatggg cgctgcgacc cccacggttg cagcgcccat tctatttttt tggtagttcg
      541 tcaggctctc tttccgaaac aataatcgcg cgcaatttga ctcggaatcg catttcggcg
      601 tagatacttg gctgctccat ggctacgtcc ttagcgattt catcagcgac gaggaaactt
      661 ctcgttgtta ccgcggcgct gttttgtgtc ctcgtgacgt gcgcctgtca ccgcagttcc
      721 ggaaaaggcg ctaatgcgaa cgacaacaca acctcgtcaa gtctatccga tgccgagcaa
      781 tcaaaacgcg aagcgcagtc tctggttgag aaagggaagg atctctacaa gaacgatcag
      841 gacgaacgag ccgccgaagc ctttcaacaa gcgattcgtc ttcagcccga tctcgccgaa
      901 gcacatctcg ggttaggcat ggcctacgcc gctctggaaa agaagactga ggcggacgat
      961 tcgtataaga aagcgatcga gctgtacaaa aaagtcgtgc agtcggaccc gaaggatggg
     1021 gaagcctttt tcaatcttgg tcaggcgcat agttttctgc accaggacga agaagccgcg
     1081 cgtgcgtttc gtcaggcgtc acacctacgg cccgatgacg aagaggcttt ctatcaatta
     1141 ggaaaggctg agattcggtt agcgcattat cccgaagcgg taacggcgtt tcagaaagcg
     1201 ctcgaactcg atcccgacga tcagcgggcg actgatgaat tagacaacgc tcgcgaaggc
     1261 tcgaagcgaa ttcaggaagg taagaagcac gcggaggaca tgctcaagaa gcagcaggaa
     1321 aaccaaaacg cgaatggaaa cgtgaacgcc aacccgcgca gccgaccgag cccgaaacca
     1381 cgactgcgac ggttctgaat gcagagagtt ttggagacat aatggccacc tacacgccgc
     1441 caccctattt cccgcagagt tcgctgtcgc cacctgacaa gaatcgctat cgaaagttca
     1501 aggttgccgt gttcgctgtt gtgttcgctt tgctgttcgt ggtcggcggc ataatcgttg
     1561 gcgccgtcta tgtgatcaag tggctggctc gctgagcgcc agaaacggcg aaacgacacc
     1621 gagaaacaac caacctgcgc ttgacacaaa cgacgcgtcc ccttatagtt tcccgtttcg
     1681 gactcaggtc tgaattcctc tagtgcaacg ctgcaactgg ttctgtcggt gcggaggcgt
     1741 tgcccggttg tgcgtttagg cgatcagcct tttgacatta ttgtggcgta agagttcgcg
     1801 ttggcgattc gaaaaatacg acgatgcgag cgcgtacggc gaaaccctcg cacttgcgac
     1861 gccacagaaa agtttcggct ccggggaagc cacgatccgc gcccgcctga acagcgaagt
     1921 cagaacgtcc ctaaaccaga attattagca gggcagttat ctgcgctgac tgccggactc
     1981 gttccggaaa gaggcaggtg ccgctctttt gcgctcggaa cgcgaagcgc agttaacgaa
     2041 aaggaagacg atgccgacga tcaatcagct agttcgcaaa ggccgacaga aggtgaagta
     2101 caagacggcc agccccgctc tgcaaagctc gccgcagaag cgcggtgttt gcactcgcgt
     2161 gtacacgcag acgcccaaga aaccgaattc ggcgttgcgt aaagtcgcgc gcgtgcgctt
     2221 gaccaatggc attgaggtga ccacttacat tcccggtgtc ggccataact tgcaggaaca
     2281 ctcgatcgtc ttgatccgcg gggggcgcgt aaaagacctg ccgggtgttc gctatcacgt
     2341 gattcgtggg acgctggatt ccgtgggcgt tagcgatcgg aagcagagtc gttcgaagta
     2401 cggcgccaag cgtccgaagg gaggcgcgaa gtaaccgatg cccagacgca gagttgccga
     2461 aagacgcgcg gttctacctg acccagttta caacagtgcc ctggtgacca agttcatcaa
     2521 cggcatcatg tggggcggta agcgttcgat cgccgaaaga actttttacg acgctttgcg
     2581 tcaggtgggc gagaaggccg gtgatgagcc tttgaagctt ttcaagcgcg cgattgaaaa
     2641 cgtacgtcct actgtagaag tgaaatctcg gcgcgtgggc ggctcaactt atcaggttcc
     2701 ggttgaagtt catcaggaac gccgcggcgc attggcgatt cgttggatag tcgcttacgc
     2761 acgcggtcgc ggcgagaaaa cgatgaccga cagattggcg ggcgagctgc tcgatgccgc
     2821 gaacaatcgc ggcaacgccg tgaagaagaa agacgacacc catcgcatgg ccgatgcgaa
     2881 caaggcgttc gcgcattata agtggtagtg acaagtgatg agtgacaagt gacaagcaag
     2941 agcgggcatt aactcgtcac ttgtcactga attcaaatgg ctaagtacga cctcaacaca
     3001 ttcaggaata tcggcatcat ggcgcacatc gatgccggta agaccaccac gaccgaacgt
     3061 gtcctttatt acacgggcgt ctcgcacaag atcggcgagg tgcatgaggg cacggcgacc
     3121 atggactgga tggagcagga acaggaacgc ggcattacga ttacgagtgc cgcgaccact
     3181 tgtttttggg aacgtaacgg ccaggacttt cgcatcaaca ttatcgacac gccaggccac
     3241 gttgatttca ccatggaagt cgagcgttct ctgcgcgtac tcgacggggc agtcgcggta
     3301 ttcgacggcg tcgcc
//
LOCUS       DASZZE010000277         2657 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_218419, whole genome shotgun sequence.
ACCESSION   DASZZE010000277 DASZZE010000000
VERSION     DASZZE010000277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2657)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2657)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2657
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_218419"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..354
                     /locus_tag="VHD88_05380"
     CDS             <1..354
                     /locus_tag="VHD88_05380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21258.1"
                     /translation="IQARYASVEAQLGFLAQTKHIQPLTTQGNITDLDASKIAYDART
                     GEGGSGAPLFGPSGRVIGITNSVFTENTASNFAVPVRHAITLLEKAGWTAPNLETEQK
                     EGAAVSQTNARPPLR"
     gene            400..2601
                     /locus_tag="VHD88_05385"
     CDS             400..2601
                     /locus_tag="VHD88_05385"
                     /inference="COORDINATES: protein motif:HMM:NF015651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HVS21259.1"
                     /translation="MRERSFDDSASMNASAAHSVTGRPSRAKRSMVWAQAAAFVLGAL
                     LLVYMIRGVGVQPIFTALGRVGFGFFVVAAINGLRHVLRTIAMSTSVAPEHRRFTFLQ
                     AFAARLGGESMSFLTFAGPLLGEPTKVALLRKRVPLVHGVPALVVDNLLYNLSVVLMI
                     FGGACLMLFTYSVPPVAREVLIVIAATTLLGMIAAALATRRRVTLLTNMIDRLAHRGF
                     RPKFLRTRRHHIYRVELTVYGFYKRRRGAFFSMIGLDLASHAISVFEVYITLRMLGFV
                     PHVGAAYIIESLTKVINFVFGFVPATIGVYEGGTEIILKSLGFAAAAGLALGIVRKAA
                     IIFWTVIGVIIITWRTVPNAWANVLDRSPRLQKTMDNLVLSNIAHRPARTAVSIAGIA
                     IGVLLVVFTVGLAHGLLRERGRREANIGAEILLRPAGAIGLSGAQPFTIPVAHATELA
                     RIPGVRMAVPVGQLLDKSDTGFGSRLIEGIPFDQYAALTGLKIKEGRKLEKGDEVILD
                     SAWQQERHVVVGSTMEIYERPFRIVGIYEPPGGGRIKIPLSTIQDQVGSENRCNAVLI
                     ACIDPSQQEQVAARIKAQFPDDQIIFTRELPELYISSLPALNIFLKVVIGVAGTISLL
                     VILLAMYTTVTERTRQIGILKSLGMSKRSIAWVIEQEAILVSFLGVLGGVLLTLILRF
                     TVMRSTSLIVDIEPKWIAIALGVGLVGGSIGALYPALRAARQDAVDALSYE"
BASE COUNT          507 a          798 c          774 g          578 t
ORIGIN      
        1 attcaggctc gttacgcatc ggtggaagcg cagctcggtt ttctcgctca gaccaaacac
       61 attcagccgc tgacgacgca gggaaatatc accgatctgg atgcaagcaa gatcgcctac
      121 gatgcgcgca ccggcgaagg cggctctggc gcgccgttgt ttggaccgtc gggtcgggtg
      181 atcgggatca ccaactcggt gtttacggaa aacacggcct ccaactttgc ggtgccggtt
      241 cgtcatgcga tcactttgct ggaaaaagcg ggatggactg ccccgaatct cgaaaccgaa
      301 cagaaagagg gcgctgccgt cagccagaca aacgcgcgac cgccactccg gtaagtgtcg
      361 cccgctgaat cggaaggtag cctgcccaat gaaaacgaaa tgagagaacg ctcgttcgac
      421 gattctgcgt cgatgaacgc gagcgccgcg cattccgtga cggggcggcc ttcgcgcgcc
      481 aagcgttcga tggtttgggc gcaagcggca gccttcgtgc tcggcgcgct cctcctggtt
      541 tacatgatcc gtggagtcgg cgttcagcca atcttcacgg cgctcggccg cgttggcttc
      601 gggtttttcg tggtcgccgc gatcaatgga ctgcggcacg tgctgcgcac gattgcgatg
      661 agcacgtccg tcgctcctga gcatcgccgc ttcacttttc ttcaggcatt cgcggcccgg
      721 ctcggcggcg agtcaatgag ctttctcact ttcgccggtc cgctgctcgg cgaaccgacc
      781 aaagttgcac tgctcagaaa gcgcgtgccg ctggttcacg gcgtgcccgc gctggttgtg
      841 gacaatctgc tctacaacct ttcggtggtg ctgatgatct ttggtggcgc atgtctgatg
      901 ctcttcacat actcggtgcc gccggttgcg cgcgaggttc tgatcgtcat cgctgcgacc
      961 accttgctcg gaatgatcgc ggcggctctg gcgacgcggc gtcgcgtcac gctgcttacc
     1021 aatatgatcg acaggctggc gcatcgaggc ttccggccaa agtttttgcg cacccggcgc
     1081 catcacatct atcgcgtcga actgaccgtt tacggattct acaagcgccg gcgcggggcc
     1141 ttcttttcga tgattgggct cgatctggct tctcacgcca tcagcgtttt cgaagtttac
     1201 atcacgctca ggatgctcgg cttcgttccg cacgtcggcg ccgcgtacat catcgagtcg
     1261 ctaaccaagg tcatcaactt tgtgttcgga tttgtgccgg cgacgattgg cgtttacgaa
     1321 ggcggcaccg aaatcatttt gaagagtctg ggctttgccg cggctgcggg cctggcactg
     1381 ggtatcgtgc gcaaagccgc gatcattttc tggactgtta tcggagttat catcataacc
     1441 tggcgcacag tgcccaacgc ctgggcaaac gtgttggacc gcagcccccg tttacaaaaa
     1501 actatggaca atctagtgct ttcaaacatc gcgcatcgtc ccgcgcgcac tgccgtcagc
     1561 atcgccggca tagccattgg agttctgctc gttgttttca ccgtcggttt ggcgcacgga
     1621 cttttgcgcg aacgtggccg gcgcgaagcg aacatcggcg cggaaatttt gttacggccc
     1681 gcgggtgcga tcggactcag cggcgcacag ccattcacga tccctgtcgc tcacgccacc
     1741 gaactcgcgc gcatcccggg ggtgcgcatg gccgtgcccg tcggacaact cctggacaag
     1801 agcgacaccg gctttggctc gcgcttgatc gaaggaattc ctttcgatca gtacgccgcg
     1861 ctgaccgggc tgaaaatcaa agaaggaaga aaacttgaga agggcgacga agtaattctc
     1921 gattccgcgt ggcaacagga gcgccacgta gttgtcggct cgactatgga gatttacgaa
     1981 cgtccgtttc ggatcgtcgg tatctacgag ccgcccggcg gcggccgcat caagattccg
     2041 ctgtccacga tccaggatca agtcggcagc gaaaatcgct gcaacgcggt cctgatcgcc
     2101 tgcatagatc catcgcagca ggaacaggtc gccgcgcgca tcaaagcgca attccccgac
     2161 gatcaaatca tcttcacgcg cgagctgccg gaactctaca tatccagcct tcccgcgctg
     2221 aacatctttc tgaaagtcgt gatcggcgtc gccggcacga tcagcctact ggtaattcta
     2281 ctggcaatgt acacgaccgt caccgaacgc acgcgccaga tcggcatact gaaatctctc
     2341 ggcatgtcca aacgctcgat tgcctgggtc atcgagcagg aagcaattct cgtcagcttc
     2401 ctcggcgtgc ttggcggtgt gctgctgact ctcattttgc gcttcaccgt gatgcgctca
     2461 acctcgctca tcgtggacat cgaaccgaaa tggatcgcga tcgcgctcgg cgtcggactg
     2521 gttggcggct cgatcggtgc gctctatcct gccctccgcg ccgcgcggca ggatgcggtt
     2581 gatgcgctga gttatgagtg actagaaccg attgaaaact cgcgtgctct acggattcgg
     2641 ttcaaagttt agagagg
//
LOCUS       DASZZE010000278         2159 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_137207, whole genome shotgun sequence.
ACCESSION   DASZZE010000278 DASZZE010000000
VERSION     DASZZE010000278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2159)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2159)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2159
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_137207"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..257)
                     /locus_tag="VHD88_05390"
     CDS             complement(<1..257)
                     /locus_tag="VHD88_05390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21260.1"
                     /translation="MREQAIASRGSRRSAAATREFVQRPARRDGREADRSRSFSPRAL
                     FGYVPSALKVVLAILALMATFIGYRVAASAAMFQVRSIDVTG"
     gene            complement(332..1285)
                     /gene="murB"
                     /locus_tag="VHD88_05395"
     CDS             complement(332..1285)
                     /gene="murB"
                     /locus_tag="VHD88_05395"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: protein motif:HMM:NF010480.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008762 - UDP-N-acetylmuramate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HVS21261.1"
                     /translation="MTARTTDLAARDAAIEQIATKLGVRAERGKRFAELTSLRVGGAI
                     DWVLSPQTEEQAAALVHELEQKEIAWRPLGSGSNVLADDGAHHYVILSVKELKADPVF
                     SGARVSVSAGYSLPRLCIDSGRHGLSGIEGLSGIPGTVGGALWMNAGAFGQEIGTVVE
                     TVRVARDGRVVEIPGSEVKWNYRHTSFQDGELLLGATLVLHPGDAEEIRARMEEAKGQ
                     RLATQPHGARSAGCFFKNPPASALGTGKMIDDLGMKGTRRGGAVVSPKHANFIVTEGD
                     DARAEDALALAEEIRERVKREHGIDLEYEVELWSSRSGEET"
     gene            complement(1310..>2159)
                     /locus_tag="VHD88_05400"
     CDS             complement(1310..>2159)
                     /locus_tag="VHD88_05400"
                     /inference="COORDINATES: protein motif:HMM:NF019850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cyanophycin synthetase"
                     /protein_id="HVS21262.1"
                     /translation="EHMDYYHDMEDVRKCFADFVNKVPFYGAAILCLDDPHVQAVIPK
                     VERRRVTYGMSAQADVSAHEITYDQSFGSSFTVWRGVDVLGVVSLRVPGKHNVYNSLA
                     AIAVGLELEVPFETIAQALGEFSGADRRFQFKGDEAGVTVVDDYGHHPTEIKATLSAA
                     RIGAPNRRIVALFQPHRYTRTNDLMDEFASAFNNADLLFVTDIYAASETPIEGVNAEV
                     LTERIKSYGHKHAEYVGAVENAAEILREHVREGDLVITLGAGSVHRAGDQLLTRLREQ
                     GLAQSS"
BASE COUNT          414 a          694 c          600 g          451 t
ORIGIN      
        1 ccggtaacgt caatgcttct gacctggaac atcgccgccg aagcggccac gcgatagccg
       61 atgaaggtcg ccatgagcgc gagaattgcc agcactactt tcagagccga cggcacataa
      121 ccaaatagag cgcggggaga gaagcttctg gaccggtccg cttctcgacc gtctcgacgc
      181 gccggacgct gaacaaattc tctggtggcc gcggcgctgc gtcgcgagcc gcgcgatgcg
      241 atggcttgtt ctctcatagt ttttctcaac cggtcggagt ccaaccttta ggttgctctt
      301 tctgagcacg ctaaagcgtg aactctaaac tctacgtctc ttctccactc cgggaactcc
      361 acagttcaac ttcgtactcg agatcgattc cgtgctcgcg tttgacccgc tcgcgaattt
      421 cttccgccag ggcgagcgcg tcctcagctc gcgcatcgtc gccttcagtg acgatgaagt
      481 ttgcgtgttt cggcgaaacc actgcccccc ctcgccgcgt tcccttcatg ccgaggtcgt
      541 cgatcatctt gccggtgccg agcgcactcg cgggcggatt cttgaagaaa caaccggcgg
      601 agcgcgcgcc atgcggctgc gtcgccaggc gctgaccttt ggcttcttcc atgcgcgcgc
      661 gaatttcttc agcgtcaccc ggatgcaaaa ctagggtcgc tcctaaaagt aattcgccat
      721 cctgaaagga agtgtggcgg tagttccact tcacttcgct gccgggaatt tcgaccacgc
      781 gaccgtcgcg cgcgactcgc acggtttcca ctacggtgcc aatttcctgg ccgaaggccc
      841 cggcgttcat ccacagcgcg ccgcccacag tgccggggat gccactgagt ccttcaatgc
      901 ctgaaagtcc gtgccgcccg gaatcgatgc aaagacgcgg cagcgaatag ccggcgctca
      961 ccgaaacccg ggcgccagag aacaccggat cagctttcaa ttctttcacg ctcaagatca
     1021 cgtaatgatg agcgccgtcg tccgccaaaa cgttgctgcc cgatcccagc ggccgccacg
     1081 cgatttcttt ttgttccagc tcgtgcacga gcgccgccgc ctgctcttcg gtctgcggcg
     1141 aaagcaccca atcgatcgcg ccgccgacac ggaggctggt caattcagcg aaacgcttac
     1201 cgcgttcggc gcgcacgcca agctttgtcg cgatctgttc aatcgccgcg tcgcgggccg
     1261 ctaaatcagt agttcttgct gtcattgccg cagccattat caaatcgatt cacgagcttt
     1321 gcgccaagcc ctgttcgcgc aagcgtgtga gtaactgatc acccgcgcga tggactgagc
     1381 cggcgccgag tgtgatcacc agatcgcctt cacggacgtg ttcgcgaaga atctcggcgg
     1441 cattctcaac cgcgcccaca tactccgcgt gcttgtggcc gtaactcttg attcgctcgg
     1501 tcaacacttc ggcgttcacg ccctcgatcg gcgtctcgct cgccgcgtag atgtcggtca
     1561 caaagagcag gtcggcgttg ttgaaggcgc tggcgaattc gtccatcaaa tcgttggtgc
     1621 gcgtatagcg atgcggctga aacaaagcga cgatgcgccg gttcggagcg ccgatgcgcg
     1681 ctgcgctcaa ggtcgctttt atttccgtcg ggtgatgacc gtaatcgtcg accaccgtaa
     1741 cgcccgcttc gtcgcctttg aattgaaagc gacgatcggc gccgctgaat tcacctagcg
     1801 cctgcgcgat cgtctcgaac ggaacttcga gttccaggcc caccgcgatc gccgccagcg
     1861 agttgtaaac gttgtgttta cccggaacgc gcagacttac cacaccgagc acgtcaaccc
     1921 cgcgccacac ggtgaaactc gatccgaagg attgatcgta agtgatctcg tgcgccgaga
     1981 cgtccgcctg cgcgctcatc ccgtacgtga cgcggcggcg ctcgactttc gggatgacgg
     2041 cctggacgtg cggatcgtca agacaaagaa tcgcggcgcc gtagaaaggc accttgttga
     2101 cgaaatctgc aaagcactta cgcacgtctt ccatgtcgtg gtagtagtcc atgtgctcg
//
LOCUS       DASZZE010000279         3623 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_74716, whole genome shotgun sequence.
ACCESSION   DASZZE010000279 DASZZE010000000
VERSION     DASZZE010000279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3623
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74716"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..199
                     /locus_tag="VHD88_05405"
     CDS             <1..199
                     /locus_tag="VHD88_05405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21263.1"
                     /translation="KENAVSLRDIIDKVAEIIQCTPVIDEHAPLPAPVPLNYISDLTR
                     VREELGWQPQIGIEEGLRSLL"
     gene            256..1335
                     /gene="waaF"
                     /locus_tag="VHD88_05410"
     CDS             256..1335
                     /gene="waaF"
                     /locus_tag="VHD88_05410"
                     /inference="COORDINATES: protein motif:HMM:TIGR02195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008920 - lipopolysaccharide
                     heptosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HVS21264.1"
                     /translation="MRSSDIQDKEIKRVVVRGTNWVGDAVMTVPALREVRRVLPDAHI
                     TLVSRPGAADIFIDADFVDDILVYDRSGLGSAWNQVREWRRRQFDLALLFQSAFEAAA
                     IAFFARVPLRIGYDADRRGKLLTHAIPLPAWKDERHEVFFYLNIVAELERLLFGTSAT
                     ESNEPQFALRVSVDRQDNAKGFLLEHGARTGAPLVLLCPGSINSRAKRWPAERYAALA
                     DAFVESGASVALIGSPAETEVSSEVSQHTRNKPIVLTGKTTVAEATAIISIADVLITN
                     DTGPAHIGSAVGTPTLVIFGPTNPLTTRPFAKTAEIIRHEPDCAPCMLRDCPIDHRCM
                     TAITPEEVFLRARAMMLRQRVEVSA"
     gene            1316..1924
                     /locus_tag="VHD88_05415"
     CDS             1316..1924
                     /locus_tag="VHD88_05415"
                     /inference="COORDINATES: protein motif:HMM:TIGR01662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HVS21265.1"
                     /translation="MSRLAHEAPRRFHQSRCLISEEVGYVDHPSRFCLFPFAGEAIRL
                     LNDNDWLAIVVTNQSGVARGYFPEAMIHAVHNRLKDELESGGARLDAIYYCSHHPTIG
                     HPPYRLDCDCRKPKPGLIHRALKDFDVDLSRSWVIGDRYVDVELAGNAGLRSALVMTG
                     YGREEWEHQRNSWQTQPDILAEDLLEAVLRITKAPLRVGDAE"
     gene            1914..2924
                     /locus_tag="VHD88_05420"
     CDS             1914..2924
                     /locus_tag="VHD88_05420"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ADP-heptose synthase"
                     /protein_id="HVS21266.1"
                     /translation="MPSRDQHLTKIVGEFSRRRVVVVGDAIADQFIYGEISRVSREAP
                     VFILRHENTETTPGGAGNCAANLAALGAQVSLISVVGDDEPGRSLLEKLRAAGVNCDR
                     VFVSSEHRTTRKVRVLAGQIHSTRQQVIRIDYDCEPELSAVLRDELRAAVQELIADAD
                     AVIISDYNYGVAEPSFCEVLREAVRGRGLPVIVDSRFRLSSFTGFTSATPNEDEVAQL
                     LHEEPRDLNALASAAEQLRKQLGYQALLVTRGSEGMLLFEEGNGQLHIDAVGSRQPVD
                     VTGAGDTVIATYALAIASGASFADAARLANFAGGIVVMKRGTATVSAKELLSSITQVT
                     SE"
     gene            2921..3409
                     /locus_tag="VHD88_05425"
     CDS             2921..3409
                     /locus_tag="VHD88_05425"
                     /inference="COORDINATES: protein motif:HMM:NF013621.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyltransferase/cytidyltransferase family
                     protein"
                     /protein_id="HVS21267.1"
                     /translation="MTRRTQSPILERAQLIEAVAEAKKRVQRVVFANGCFDVLHVGHT
                     RYLEGARALGDLLVVAVNSDEQVRKQKGEGRPLMPQEQRAEMVASLQAVDLVTIFDEP
                     TVEQLLLALQPDIHAKGTDYTEDTVPERDVVRSFGGRVAIVGDPKDHSSSEMIWKIGS
                     KQ"
BASE COUNT          758 a          995 c         1081 g          789 t
ORIGIN      
        1 aaaagagaac gcggtgtcgc tgcgggacat catcgacaag gtcgccgaaa tcattcagtg
       61 cacgcccgtg attgacgagc acgcgccgct gcctgcgccg gtgccgctga attacatttc
      121 cgatctgacg cgcgtccgcg aagagttggg ctggcagcca cagattggaa tcgaagaagg
      181 attgcgaagt ttgttgtgat agccggagcg cggacatctt gtccgaattg agcgcgcagc
      241 gcgaacgttg ttgttttgcg aagctctgat attcaagaca aggaaatcaa acgcgtcgtc
      301 gttcgcggca cgaattgggt tggcgacgcc gtgatgactg tgcctgctct gcgcgaggtg
      361 cgccgcgtgc tgccagatgc gcatatcact ttggtttcgc gaccgggcgc tgccgacatt
      421 tttatcgatg cggatttcgt tgatgacatt ctggtttacg atcgttccgg tcttggctcg
      481 gcatggaatc aagttcgcga gtggcgccgg cgccaattcg atcttgctct ccttttccag
      541 agtgccttcg aggcggcagc gatcgcattc tttgcacgcg tgcctctacg aatcggctat
      601 gacgccgacc gtcgcggaaa acttttgacg catgcgattc ccttgcctgc ctggaaagac
      661 gaacgtcacg aggtgttttt ctacctgaac atcgtcgctg aactcgaacg actcttgttc
      721 ggcacttccg ccactgaatc caacgaaccg cagttcgctc ttagggtttc agtcgatcgg
      781 caagacaacg cgaaagggtt tttgcttgag cacggcgcgc gaacaggcgc accgttagtt
      841 ttgctttgtc ccggttcgat caatagccgt gctaaacgct ggcccgccga gcgctatgcc
      901 gcgttggcgg acgctttcgt tgaatcaggc gcgagcgtag ctttgattgg ctcgccggct
      961 gagacggaag tttcaagtga agtttctcag cacacacgaa acaaaccgat cgtattgaca
     1021 ggcaagacaa ctgtcgccga agccacggca atcatcagca tcgcggatgt cttgatcacg
     1081 aatgacaccg gcccagcgca tatcggctcg gccgttggca cgccgaccct cgtcatcttt
     1141 ggtccgacaa atccgttgac gacgcggcca tttgctaaga ccgccgaaat cattcgccat
     1201 gagcctgatt gcgcgccgtg catgctgcgc gattgtccaa tcgatcatcg atgtatgact
     1261 gcaatcacgc cggaagaggt ttttctgcgc gcgcgcgcca tgatgttacg gcaacgtgtc
     1321 gaggttagcg catgaagcgc cgcgccgttt tcatcaatcg cgatgcctga tttccgaaga
     1381 ggtcggctat gtcgatcatc cgtcgcgctt ttgcctgttt cctttcgctg gcgaagcaat
     1441 tcgtctgctg aacgacaacg attggttggc aatcgtcgta acgaatcaat cgggcgtcgc
     1501 gcgcggttac ttcccggaag cgatgattca tgcggttcac aatcgattga aagacgaact
     1561 tgagagtggc ggcgcgcggc tcgatgcgat ttactactgc tcgcatcatc caacgatagg
     1621 ccacccgccg taccggctcg attgtgattg tcgcaagcca aagccgggcc tgattcatcg
     1681 cgctctgaaa gactttgacg tcgatctatc gcgaagctgg gtgattggcg atcggtatgt
     1741 tgacgttgaa ttggctggga acgcgggcct gcgttcggcg ctggtaatga ctggctatgg
     1801 tcgcgaagag tgggaacatc agcgcaattc gtggcaaact cagccggaca ttctggcgga
     1861 ggatttgctc gaagccgttc taagaattac gaaagcacca ttacgtgtcg gagatgccga
     1921 gtagagatca gcatctgacg aaaatcgtcg gcgagttttc gcgtcgccgg gtcgtcgtgg
     1981 tcggcgacgc gatcgctgat cagtttatct atggcgaaat cagccgcgtc tcgcgcgagg
     2041 cgccggtctt cattcttcgc cacgagaaca ctgagacgac gccgggcggc gcgggcaatt
     2101 gcgcggcgaa cctggcggcg ctgggcgcgc aagtctcgct gatttccgtc gtcggcgatg
     2161 acgaacccgg cagatcgttg ctggagaagc tgcgcgctgc cggtgtcaat tgcgatcggg
     2221 tttttgtatc aagcgaacac cgaaccacga ggaaagttcg cgtcctggcg ggacagattc
     2281 attcgacacg acaacaggtg attcgcatcg actacgactg cgagcctgaa ctgagcgcgg
     2341 tgcttcgcga tgaactgcga gccgccgttc aagaactaat cgccgacgcc gacgccgtga
     2401 ttatttcaga ctataactac ggcgtggccg agccgagctt ttgcgaagtc ttgagagaag
     2461 ccgtgcgcgg ccgcggcctc ccggtgatcg ttgactcacg tttcagactg tcgagtttta
     2521 ccgggttcac ttcggcgaca ccaaacgaag acgaggttgc gcaactgctg cacgaagagc
     2581 cgcgagattt gaacgcgctc gcatcggctg ccgagcaact gcgcaagcaa cttggttacc
     2641 aggcgctgct ggtcacgcgc ggtagcgaag gcatgctgct tttcgaagaa ggtaatgggc
     2701 agcttcacat cgacgcggtc ggttcgcgtc aaccggttga cgtgactggg gccggcgaca
     2761 cggtgatcgc gacctacgcg ctggcaatcg cgtccggcgc ctctttcgcc gacgccgcgc
     2821 gcctggcaaa cttcgctggc ggtatcgtag tgatgaagcg cggtactgcc actgtcagcg
     2881 ccaaagaact tctctcctca attacgcagg tgacaagtga atgacccgaa ggacgcaatc
     2941 accaattctt gagcgagcgc agctaataga agccgtcgcc gaagcaaaga aacgcgttca
     3001 gcgggtcgtc tttgccaacg gctgcttcga tgtcttgcac gttgggcaca cgcgttactt
     3061 ggaaggtgcg agggcgctgg gcgatttgct ggtggtggct gttaactctg acgaacaggt
     3121 gcgcaaacaa aaaggggaag ggcgaccgct tatgccgcaa gagcagcgcg ccgagatggt
     3181 ggcatcgctc caggcagtcg atctggtcac gatctttgac gaaccgacgg tcgagcaatt
     3241 actgctcgcc ctgcagccgg acattcatgc gaaaggtact gactatactg aggacacggt
     3301 tcccgaacgc gatgtggtac gatcttttgg tggacgagtg gcgatcgtag gcgatccaaa
     3361 agaccactca tcgtccgaga tgatctggaa aataggcagt aagcagtagg cagcaacgag
     3421 aaaaaggcag cagttcatgc gccatcctgt ttcttaactg ctcaccgctc actgccgact
     3481 gctcactgat tcatgcgtat tctcatcgtc aaactcggca gcatcggcga catcgtgcac
     3541 accctgccgg cactcgcttc aatacgccgt gctttgccgg aagcggagat ttcgtgggct
     3601 gtcgaacgcg gggcggcaga gat
//
LOCUS       DASZZE010000280        10356 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_137440, whole genome shotgun sequence.
ACCESSION   DASZZE010000280 DASZZE010000000
VERSION     DASZZE010000280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 10356)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10356)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10356
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_137440"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1033
                     /locus_tag="VHD88_05430"
     CDS             <1..1033
                     /locus_tag="VHD88_05430"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VCBS repeat-containing protein"
                     /protein_id="HVS21268.1"
                     /translation="LALADFNRDDKLDLAVANSGSNNVTILLGDGAGGFRSAAGSPFA
                     AGHSPSDIAVGDINNDGNLDLAFANHDTNYLTVLTGDGKGSFGPAPGSPFTVQSKPHP
                     HGIVMADFNGDGKPDLATDDWQNNRITVVFNDGRGGFLSPGVSFAVGKMPYHKLRAAD
                     LNKDGRADIVTTNFEGGNVTILLADGKGIFIEPKGSPFEANQQPFGVAIGDLNADGNP
                     DLAVAHYSGHITDPSGDRMSILLGAGNGTFRLAWSQAAPGNAPTNAAIGDINGDGIAD
                     VVFGNYGSASVTVVLGGRREFLLAPGSPFKVGRHPSSVAVGDLNGDGKADIVTSNEED
                     NDISVLLTK"
     gene            1176..1655
                     /locus_tag="VHD88_05435"
     CDS             1176..1655
                     /locus_tag="VHD88_05435"
                     /inference="COORDINATES: protein motif:HMM:NF025734.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme-binding domain-containing protein"
                     /protein_id="HVS21269.1"
                     /translation="MKKILRVLKWIAIGLIVVFLGIQFVRPARTNPAVDESQTIFART
                     QMTPHVAAIFNRSCVDCHSNKTEWPWYTNVAPLSWFIVNHVNEGRKNWSLSEWGQLDR
                     DHQDRKLRQICDEITDGAMPLSSYTPMHPNSKLSADDKKKLCDWTDAERARLSNAAK"
     gene            1785..4400
                     /locus_tag="VHD88_05440"
     CDS             1785..4400
                     /locus_tag="VHD88_05440"
                     /inference="COORDINATES: protein motif:HMM:NF013592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M1 family aminopeptidase"
                     /protein_id="HVS21270.1"
                     /translation="MQSRFTFKSGAQNCFLTVAFTIIAASTAFAQQSQPTPTPAPSAT
                     PARRAARPIPPPRYIPPHDYDQRNIKLDLRFDWGREQAIGTETITLAPVVKDLRRVDF
                     DAAYMSVSGVALASGTALKFEYDATKEKLTVLLDRAYQPADELTLVISYHTNQPPPEK
                     RAGLGGGGLNFIKPRPDDPTRPRQVWSQGEAEANHLWFACFDHPNDFVTSEVIATVEK
                     PLTVISNGKLISMKDNPDGTRTFDWKIDDPHATYLTSIIVGEFAPIIGTYADIAVITN
                     VYTNEIDEGVVTAARLPEMVKFFSEKTGVKYPYAKYAQTTVRDFGGGMENISATTQTD
                     NMIHDARAELDQTADSLESHELAHQWFGDYVTCRTWSDIWLNESFATYFQAMWDEHHL
                     GHDDFLYLDVKANQDQYYQAWGRGQRRPIVTKNYTNPDAVFDTYAYPRGGAVLHMLRT
                     FLGEDNWWRSINHYLTKYAHQPVETEQLRIAIEETTGQPMDWFFDEWVYKMGHPVFRV
                     TQDYDAANKALTLIVRQEQHPDPDSQYPQVTYFQTPVDIEIATATGKRVERVQIDPKE
                     EQTIKLAVDSEPLLVNFDYGDTLIKELVFSKTTGQLLYQLAHDQDVLGRIWALQQLSA
                     RMNDANTTGADRRTIIKAIGDAATKDQFWGARLEAVTALNGLKDAKALLLTAIKDANA
                     RVRARAINSLAATKDASLADAYRQLLGDQSYAVIRAAAAALGQTKSPAAYDALMKIID
                     MPSWRDTIRASALIGLAALGDKRALDLGFKYFAAGNPNGVRAAAVGLLGATGKDDARI
                     FPLISAALTDTIERRNFALFAGEADALVALGDERGLALFQELSKKPGTPPQLVAALSG
                     FESRLRAKLAPKPNP"
     gene            4555..5334
                     /locus_tag="VHD88_05445"
     CDS             4555..5334
                     /locus_tag="VHD88_05445"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HVS21271.1"
                     /translation="MLDKENGEKGLTRSTEAAGVALAPAPMTSLLIIEDDDNISTAIE
                     EYFSRAGYAVNTAADGIAGLEAAATNRPDVVVLDLMLPKMDGLSVCKELRQKNPQMPI
                     LMLTAKDDVVDKVLGLEMGADDYITKPFSLREVEARIKSVLRRARAASVGSNGADETP
                     IVRGNLRIDPVRREVTVADQIVELTPKEFDLLRLFAANPGRVFPRKYLLEKIWDYSYE
                     GYDRTIDSHINRLRAKVEQNPDNPQLVLTVWGIGYKFTDAE"
     gene            5467..7140
                     /locus_tag="VHD88_05450"
     CDS             5467..7140
                     /locus_tag="VHD88_05450"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HVS21272.1"
                     /translation="MRTQNSTCGLLRSSQTLIAGVLCALAFLGATGLAHAQNADASSS
                     DDWLSALFSTYGFTIILVLFLVGLMVYKIRASKKTRDAAAAKTRARGQRSEKNYLAPV
                     GTPAEPGLLEDRRAHSRPAEPQLDKAPVVDFEQSAYGAYRIDQEVGKLVLGKPHRMDV
                     MASRVPDDRRAIEASLVKALDSSDAGEDGQRRARQALEEYGFVARQSAMLLQGRDAWE
                     RSSAARSLGQIGAQSSLVFLIEALHDMDSVVRNQAVSSLGSLKQPAAIGALLDIARRH
                     TDIPASLLSETLSACSVESLGYLDMPSSEPALLGDGASSAESHEMESFIDLEDLPAGN
                     EDEALTTMLTQLGSSDEKARARAVQELGLHHVQRSVSALSSMALNDSDSAVRAAAVAS
                     LGSIDHESVFAPVVIALADESREVRAAAARTLSGLHFDRADAYVRVMETADVETLQTV
                     ARACVKTGIAAQAADRLASEDRRQAYEAFSLFSLLAKAHETQPILDVIENHEDSEARL
                     CAVRVLNVAAQPDVAPKLRELVGKESVPDNLRTAILEVLYKLDQEPVFD"
     gene            7221..8966
                     /locus_tag="VHD88_05455"
     CDS             7221..8966
                     /locus_tag="VHD88_05455"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HVS21273.1"
                     /translation="MNTMNRSSCCARISWFVLPCALIPLIGSMLVIAQSRIVRPDSQT
                     NSNRSGKRQHVATLHSSDTPQGSHVALTSDQSLNDYEAYRRGDRFYLKIPAADVPRAE
                     ATRGRGYADVKAQRSGDSTVLSFRLQPGATAHVEQQRSNKLDVVFTMPGASVTAPTSN
                     SGREVARANNRSNSEPSARTDSTRKANAEKANASKGSSPLKSSTASPTNSSSPGAKAA
                     ASPATLAESSKPGASPLANPSPTKPSTATLPQKTSATTTASPTNHPTAQPPTQTSANA
                     WTNFEELAHYWMLSAQLNPIPVAIAAVVLLLLIALFVFQRRRAKATRRVRPGKSREVN
                     LATATGATLSTAAETAPIVTPVAAAAAIAATPSVTEREEAEKAVVTSSPVDPARQARV
                     AGVTEQVKNVMAGNEYDQRVIGSDDRETRQLVGAELLSALVGRNIQRRDRARAAFMEH
                     GYFDDATRDLRIAESPNERAAAARRLSFVHDREATPHLIAALDDPAPEVRRTAVEALM
                     DLRDPAAIAPLNSLMQTESDRKVPRTLIKHAIDSCASSEPASAAAAVSNFSAANPTAP
                     TSQPPIEPEREVIEL"
     gene            8963..>10356
                     /locus_tag="VHD88_05460"
     CDS             8963..>10356
                     /locus_tag="VHD88_05460"
                     /inference="COORDINATES: protein motif:HMM:NF036900.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21274.1"
                     /translation="MTAPELLSQLREIGVEVKTSDGERLVVDAPKGTITPDLRSALTA
                     HKAELLQILKTEQATDQPSTVTTESVEPHVPAPKVSESPAVLTGPADKSEIATTEAAE
                     EIKRLEAELMRLRAEEEARRAELAAARMAVENTLRAEQERWRQVEEETARRRAEQEKK
                     RIEAEAHEHAEEENRRRIAEHELARAEEELKRMRAMEDARRADVEAGQRAADETHRAE
                     LEALRRSETEQAQRRAEEERRYLEAEARKKAQEDELRRHTEMRFRAVEEEIVRVQARE
                     DARQKAAEEAQRLAEEAARRRSDEESRRLAEEQARLRAEQEAQLRAQIEAEMRAEAEA
                     RRKAEEETRRLAEEQARRRAEEEAERLAAAEAVRRAEEDARRHAEEKAHRRAAEDARR
                     QAEEQAQRQAEQQARLQSEEEARLKAEDAVRQRAEMEARIRAEVEAKIRAEEAERRQA
                     EALHRAEEERIQTE"
BASE COUNT         2399 a         3015 c         2964 g         1978 t
ORIGIN      
        1 cctggcttta gccgacttca atcgtgatga caagctcgat ctcgccgtcg ctaattccgg
       61 aagcaacaac gtcacgattc tcctgggcga tggcgcaggt ggctttagat ccgccgccgg
      121 ctccccgttt gctgccggtc acagtccgag tgatattgct gtgggcgaca tcaataacga
      181 cggcaacctc gatctggcct tcgcgaacca tgatacaaac tacttgacgg tgttgactgg
      241 agatggtaaa ggcagtttcg ggccggcacc cggctcgcca ttcactgttc aaagcaaacc
      301 gcatcctcac ggaattgtaa tggctgactt caatggtgat gggaagcccg atctggcaac
      361 tgacgactgg cagaacaacc gcataactgt tgtcttcaat gacgggaggg gcggcttcct
      421 ttctcctggc gtttcgttcg ctgttggcaa aatgccatat cacaaactgc gcgcggctga
      481 tctgaacaaa gacggcagag cagatatcgt caccactaat tttgaaggtg gaaatgtgac
      541 gatcctcctt gccgacggca aaggcatatt tatcgaaccg aagggatctc catttgaagc
      601 gaaccaacaa ccgttcggag ttgccatcgg cgatctaaac gccgacggaa atcccgatct
      661 ggcggtagca cattactcgg gacacatcac ggacccgagc ggtgaccgca tgtcgattct
      721 gctgggagca ggcaatggaa cattccggct ggcatggtcg caagccgctc cgggcaacgc
      781 gccaacaaac gcggcaattg gagacatcaa cggtgacggc atcgcggatg tagtatttgg
      841 caactatggg agcgccagcg taaccgtggt tctgggaggt cggcgcgaat tccttctcgc
      901 acccggttcg ccgtttaagg tcggccgtca cccctcgagc gtcgcggtag gagatctgaa
      961 tggtgatggc aaagctgata tcgttacctc taatgaggag gacaacgaca tctcggtttt
     1021 gctgacaaag taggcgcgaa gactcagaat caagttttcg atttgcttac aaactggagg
     1081 ccgccgtttc tcgtgttaac aatacggcta ccgtgacgtt tataagcaag ggggccgcgc
     1141 cgcgaattca atcataatcg acaaagacag cgagcatgaa aaaaatactt cgagttttga
     1201 aatggatcgc tattggcttg atcgtcgttt ttctcggaat tcaattcgtg cggcctgcca
     1261 gaacgaatcc ggccgttgac gagtcgcaaa caatcttcgc gcgcactcaa atgacgcctc
     1321 atgttgcggc gattttcaat cgctcatgcg ttgattgtca ttcaaacaaa acggagtggc
     1381 cgtggtacac gaatgtcgcg ccgctgtcct ggttcatagt caatcacgtc aacgaaggac
     1441 gtaagaactg gagtctgtcg gagtggggcc agctcgatag agaccaccag gatcgaaagc
     1501 tgcgccaaat ctgcgacgag ataacggacg gcgccatgcc gctcagttca tatacgccca
     1561 tgcatcctaa ttcgaagcta tcagccgatg acaagaagaa gctttgcgat tggactgacg
     1621 cggaacgcgc gcgtctttcg aatgcggcta agtgaccgtg tcgccttccc tgctctaatt
     1681 gcgattcaaa tgcttcgacc gcacttgtct ttgcgaaagc aggatgccaa aatccccact
     1741 ccgtaatccg tctgtcgcat atcgagtaaa tcctggagac tgccatgcaa tcacgtttca
     1801 cattcaagag cggtgcgcag aattgtttct tgactgtcgc attcacaatc atcgctgcga
     1861 gcacggcgtt cgctcagcaa agccaaccta cgccaacccc ggcgccatca gcgacacccg
     1921 cacggcgagc tgccagaccg attccgccgc cgcgatatat tccgcctcac gattacgacc
     1981 agcgcaacat caagctcgat ctgcgctttg attgggggcg cgaacaagcc atcggcaccg
     2041 aaacgattac tttggcgccg gtcgtcaagg acttgcggcg cgtagatttt gacgctgcgt
     2101 acatgtcagt ttcaggcgtg gccctggctt cgggcacggc gctcaaattc gaatacgacg
     2161 cgacgaaaga aaaactgacc gtgcttctgg atcgtgcgta ccagcctgcc gacgaactta
     2221 cgttggtgat ttcttatcat acaaaccaac caccgccgga aaaacgcgcc gggttgggcg
     2281 gcggaggttt gaacttcatc aagccacgtc ccgacgatcc cactcggcca cgacaggttt
     2341 ggtcgcaggg cgaagcggaa gcaaatcatc tttggttcgc ctgcttcgat catccgaacg
     2401 actttgtaac ttcagaagta attgccacgg tcgagaaacc actgacggtg atctcgaacg
     2461 ggaagttgat ctcgatgaaa gacaaccccg acggcacccg aaccttcgat tggaaaatcg
     2521 acgacccgca cgcgacttat ctcacgtcga tcatcgtcgg tgagttcgcg ccaatcatcg
     2581 gcacatacgc cgacattgcc gttatcacca acgtctatac aaacgagatc gacgaaggag
     2641 tagtcacggc ggcgcgcttg cccgaaatgg ttaagttctt ttccgaaaag accggagtga
     2701 aatatcccta cgccaaatat gctcagacga ccgtgcgcga tttcggcggc ggcatggaga
     2761 acatcagtgc gaccactcaa accgataaca tgattcacga cgcgcgcgct gagttagatc
     2821 aaaccgccga cagtttggag tcgcacgagt tggcgcatca gtggttcggc gattacgtga
     2881 cgtgtcggac ctggtcggac atttggctga atgaaagttt cgcgacttac ttccaggcaa
     2941 tgtgggacga gcatcatctg ggccacgacg actttttgta cctcgatgta aaagcaaacc
     3001 aggaccagta ctatcaagcc tggggacgcg gacagcgccg acccatcgtc acgaagaact
     3061 ataccaatcc tgacgcggtc ttcgacactt atgcgtatcc gcgtggcggt gcggtgttgc
     3121 acatgctgcg cacgtttctg ggcgaggata actggtggcg ctcgatcaat cactacctga
     3181 caaagtatgc gcatcagccc gtcgaaactg agcagcttcg aatcgcgatc gaagagacta
     3241 cgggacagcc gatggattgg tttttcgacg agtgggttta caagatgggc catccggtgt
     3301 ttcgcgtcac gcaggattat gacgcggcca acaaggcgct gacgttgata gtcaggcaag
     3361 agcaacatcc cgatcccgat tcgcaatatc cgcaagtgac ttactttcag actccggtgg
     3421 atattgagat tgccactgcg acgggcaaac gagttgagcg cgtgcagatc gatccgaaag
     3481 aagagcaaac aatcaagctc gcggtcgatt cggagccgtt gctggttaac tttgactacg
     3541 gtgacacgct gattaaggag ttggtgttca gcaagacgac gggtcagttg ctgtatcaac
     3601 ttgctcacga tcaggacgta ctcggtcgca tttgggcact ccaacagttg agcgcgcgaa
     3661 tgaacgacgc caacacgacg ggcgctgacc ggcgaacgat tatcaaggca atcggtgacg
     3721 cggcaactaa ggatcagttt tggggcgcgc ggctcgaagc agtcacggcg ctcaacggat
     3781 tgaaggatgc gaaagctttg ctgctgactg ctatcaaaga cgcgaatgca cgtgtgcgcg
     3841 ctcgcgcgat caattcgctc gcggctacga aagacgcaag tctcgccgat gcttaccgac
     3901 aacttctggg cgaccaaagc tacgcagtaa ttcgcgccgc tgccgcagcg ctaggccaga
     3961 cgaagagccc tgctgcctac gatgcgttga tgaagataat cgacatgccg tcatggcgag
     4021 acacgattcg cgcctcggcg ctgatcgggc tggccgccct cggcgacaaa cgcgcgctgg
     4081 acctcggctt caaatatttc gcggccggga atcccaacgg agtgcgcgcc gccgcggtcg
     4141 gtttgctggg cgcgacgggc aaggatgacg cgcgcatctt tccattgatc agcgccgcgt
     4201 taacggacac tatcgagcgc cgcaactttg cccttttcgc tggcgaggca gatgcgctgg
     4261 tcgcgctcgg cgatgaacgc gggctggcgc tgtttcagga gttgagcaag aaacctggaa
     4321 ctcctccgca gttagtcgca gcgctctcgg gctttgagtc gcgccttcgg gccaagctgg
     4381 cgccgaagcc aaacccatag cgccaagttc gcttgtctga tagtgccaat tttcgtcact
     4441 ttaaaaaact ttgggcttga gttgcgccgc gttgtcctgt tatagtcctt catgaaggcg
     4501 cactctttcg tgcgctcagc cgaaacgcct tctcgcctca aaggaaaact gccaatgctc
     4561 gacaaagaga acggggagaa aggcctgact cgctcaaccg aggccgccgg cgtagctctc
     4621 gcacccgcgc ctatgacctc gctcctgatc attgaagacg acgacaacat ctcgactgca
     4681 atcgaggagt acttctcgag agcaggctat gccgtgaaca ccgcggcaga cggaatcgcc
     4741 ggacttgagg cggcagccac gaaccggcca gacgttgttg tgttggacct gatgctgcca
     4801 aaaatggacg gcctctccgt ctgcaaagag cttcgccaaa agaatcctca gatgccaatt
     4861 ctcatgctaa ccgcaaagga cgacgtggtt gacaaagtgc tcggcctcga aatgggcgct
     4921 gacgattaca tcaccaagcc tttcagcctg cgcgaagtcg aagcccggat caaatccgta
     4981 ttgcgtcgag cgcgcgcggc ctcggttggc agtaacggcg cagacgaaac accgatcgtg
     5041 cgcggtaact tgcgcatcga tcccgtcagg cgcgaagtaa cggtggccga ccaaatcgtg
     5101 gaacttactc ccaaggaatt cgacctgttg cgtttgtttg ccgcaaatcc cggacgcgtt
     5161 tttccccgca agtacctgct cgagaaaatc tgggattact cctacgaagg ttatgatcga
     5221 acgattgatt ctcacatcaa tcggttgcga gcaaaggtcg agcagaaccc ggacaatccc
     5281 cagctcgtgc tcacggtatg gggcatcggg tacaaattca cagacgcaga ataggaaatt
     5341 gcctgcggct cactcgccac ggcttccctg gaatttgaat cacgcaacgc gttaatccgt
     5401 ctcccgaaca ctctcaggca tacacacgcc gctttgagag aaaaagccca aatcctggtg
     5461 aaagttatgc gaactcagaa ttctacctgc ggcttgctac gatcgtcgca aacgttaatt
     5521 gccggcgtac tgtgcgcgct tgctttcctg ggcgccaccg gcttggctca cgcgcagaat
     5581 gcggacgctt cgtcatcgga cgattggctt tccgcgctct tttcgaccta tggcttcacg
     5641 attattctag tgctgtttct ggtcggcctg atggtctata agatccgcgc ttcgaagaaa
     5701 acgcgcgacg cggctgccgc gaaaacgcgc gcacgaggcc agcgatcaga gaaaaactat
     5761 ctcgcgcccg ttggcacgcc tgcggaaccg gggttgctcg aagatcgtcg tgcccactct
     5821 cgcccagcgg aaccacaatt ggacaaggca ccggtggtcg atttcgaaca atcggcctac
     5881 ggcgcatatc gcatcgatca ggaagttgga aagctcgtcc tgggcaaacc gcatcgcatg
     5941 gacgtaatgg cttcgcgcgt tccggatgat cggcgcgcaa tcgaggcttc gctggttaag
     6001 gctttggatt cgtcggacgc cggtgaggac ggccagagac gtgcgcgaca agctctcgaa
     6061 gaatatggat tcgtggcaag gcaaagcgca atgctcttac agggccgaga cgcatgggaa
     6121 cgctcatccg cagcccgttc actcggacag atcggcgcgc agtcttcgct cgtgtttctt
     6181 atcgaagcgt tgcacgacat ggactccgta gttcgcaacc aggcagtttc cagtttgggt
     6241 tcgctcaaac agccggcggc gatcggcgcg ttgctcgaca ttgcgcggcg gcacacggac
     6301 atcccggcgt cgctgttgag cgaaacattg agcgcctgct cggtcgagag tctgggctat
     6361 ctcgacatgc cttcgtctga gccggccctt ctcggtgacg gcgcttccag cgcagagtcc
     6421 cacgagatgg aatcgttcat tgaccttgaa gacttgcctg cgggcaacga agacgaagcg
     6481 ctgacaacta tgttgaccca gctcggatcc tctgacgaaa aggcgcgcgc gcgcgccgtg
     6541 caggaactcg gcttgcacca cgtgcagcgc tcggtgtctg cgctctcgtc gatggctctt
     6601 aacgattccg attcggcggt gcgcgcggcg gctgtagcca gcctcggctc gatcgatcac
     6661 gaatcggtgt tcgcaccggt agtaatcgcg ctggccgacg aatcccgcga agtgcgcgcc
     6721 gcagccgcaa gaacattgtc gggtcttcat ttcgatcgcg ccgatgctta cgtgcgcgtg
     6781 atggaaactg ccgacgtgga aaccttgcaa accgtcgccc gcgcctgcgt taagaccggt
     6841 atcgctgcgc aggccgcgga tcgtctggcc agcgaagatc gtcgccaggc ctatgaagcg
     6901 ttctcgctat tctcgctact ggccaaagcc cacgaaactc aaccgattct cgacgtgatc
     6961 gagaatcacg aagacagcga ggcgcgactg tgcgctgtcc gcgtgttgaa tgtggccgcg
     7021 caacccgacg tggcgcccaa gctgcgcgaa ctcgtcggca aagagagtgt ccccgataac
     7081 ttgcgcactg cgattctcga agtcttgtat aagctggatc aggagccagt attcgactga
     7141 aagcgcgagt gacaacggcg cactgacgtt gcataattct ctggagcgtt ctcaggtttc
     7201 tcattaacgt tgccccaatg atgaacacga tgaaccgatc gtcttgctgc gcgagaatct
     7261 cgtggttcgt cttgccatgc gcgttgattc cgttgatcgg ttcaatgctg gtcatcgcgc
     7321 aaagccgcat cgtcagacct gattcccaaa ctaattccaa ccgctcaggc aagcggcagc
     7381 acgtcgctac gttgcattcc agtgacactc cccaagggtc gcacgttgcg ctcacgtcag
     7441 accagtcatt gaacgattac gaggcgtatc ggcgcggcga tcgtttttac ctcaagattc
     7501 cggctgccga tgtgccgcgc gcggaagcaa cccgcggtcg cggttacgcg gacgtgaagg
     7561 cgcaacgaag tggcgacagc acagtcctct cgtttcgttt gcaaccaggc gccaccgctc
     7621 acgtcgaaca acaacgctcg aacaagctcg atgtagtttt cacgatgccg ggcgcaagcg
     7681 tcacggcccc aacgtcgaac tctggccgcg aagtcgcgcg tgctaacaat cgatccaatt
     7741 ccgagccgtc agcgcgaaca gactcgacca ggaaagcgaa cgctgaaaaa gcaaatgcct
     7801 ccaaaggatc gagtccgttg aaaagctcga ctgcttcgcc aaccaactct tcgtcgcccg
     7861 gagccaaagc agccgcatcg cctgcgaccc tagccgaaag ttcgaagccc ggcgcgtcgc
     7921 cgttggcgaa tccaagtcca acgaaaccat caaccgcgac tctcccacag aaaacttcag
     7981 caacgacaac tgcatcgccg acgaatcacc cgaccgcgca gccaccgact cagacgtccg
     8041 caaacgcttg gaccaatttc gaggaactcg ctcactactg gatgttatcg gctcagctca
     8101 acccaattcc ggtggccatc gccgccgtcg tcctgctgct gttgattgcg ctgtttgttt
     8161 tccagcgtcg ccgggccaaa gccacgcgtc gcgttcgacc gggcaaatcc agggaagtaa
     8221 atttagcgac agcgaccggc gcgacactct cgaccgcggc ggaaacagca ccaattgtga
     8281 ctcccgtggc cgcagcagca gcaatcgcgg ccacgccttc cgtgacagag agagaggaag
     8341 ccgagaaagc ggtagttaca tcgagcccgg tcgatccagc gcgtcaggcg cgggttgccg
     8401 gcgttacgga acaagtgaag aacgtcatgg cgggcaacga atatgatcag cgcgtaatcg
     8461 gttctgatga tcgcgagacg cgacagctcg tcggtgcgga actgctttca gcgctcgtgg
     8521 gtcgaaacat tcagcggcgc gatcgcgcgc gcgcagcctt catggagcac ggttattttg
     8581 acgacgctac gcgcgacttg cgcattgcgg aatcgccgaa cgaacgcgct gcggccgcgc
     8641 gccggcttag ctttgtacac gatcgcgaag ccactcccca cttgatcgca gcgctcgacg
     8701 atccggctcc cgaagtgcgg cgcacggccg tggaagcgct gatggatttg cgagatccgg
     8761 cggcgatcgc tcccctgaac tctctgatgc aaaccgaatc cgatcgcaaa gttccccgca
     8821 ctctgatcaa gcatgcgatt gactcctgcg ccagcagcga gcccgcaagc gccgcagcgg
     8881 cagtttccaa cttttccgcg gctaacccaa ccgcgccaac ttctcaacca ccaatcgaac
     8941 ctgaacgcga ggtgatcgaa ctatgacagc gcctgaactg ctttctcaac tccgcgaaat
     9001 cggcgtcgag gtaaagacct ccgacggcga gcgcctggtt gttgatgcgc caaagggcac
     9061 catcacgccg gatttgcgca gcgcgctcac agcacacaaa gccgaactgc tgcaaattct
     9121 taagacggag caagcgaccg atcaaccatc gaccgtgacc acggagtccg ttgaaccgca
     9181 cgtgcccgct ccgaaagttt cggaatcgcc cgcggtcttg actggtccgg cggacaagag
     9241 cgagatcgca accaccgagg ctgcggagga aataaagcgg ctggaggccg agctaatgcg
     9301 tctgcgcgcg gaagaggaag cgcggcgcgc cgaacttgcc gctgcccgca tggctgtcga
     9361 gaacacgttg cgcgcggaac aggaacgttg gcgtcaggtc gaagaagaaa ccgctcgtcg
     9421 ccgcgccgaa caagagaaaa aacggatcga agccgaagct cacgagcacg ccgaggagga
     9481 aaatcgtcgt cgcattgcag aacatgaact cgcgcgcgcg gaagaggaat tgaagcgaat
     9541 gcgcgcgatg gaagatgccc gccgcgctga tgtcgaagct ggccaacggg ccgctgacga
     9601 aacgcaccgc gcagagttgg aagctcttcg cagatcggaa actgagcagg cgcagcgccg
     9661 cgccgaagaa gagcgtcgct accttgaagc tgaggctcgt aagaaagctc aggaagacga
     9721 gttgcgacgc cacactgaga tgagattcag agccgtcgag gaagagatcg tgcgggtgca
     9781 ggctcgcgaa gatgctcggc aaaaggccgc cgaagaagct caacgtctcg ccgaggaagc
     9841 cgcgcgtcgt cgctctgacg aagagagccg ccgcctggct gaagagcaag ctcggctgcg
     9901 agcggaacag gaagctcaac tacgcgctca aatcgaagct gaaatgcgcg ccgaagccga
     9961 agcgcgacgc aaggcggaag aagagactcg ccgtctcgcc gaagaacagg ccagacgccg
    10021 ggccgaagag gaagccgaac gactggccgc cgcggaagcg gtccgccgcg ccgaagaaga
    10081 cgcgcgacgt cacgccgaag aaaaagcgca ccgccgagcc gctgaggacg cccgccgtca
    10141 agcggaagag caggcgcagc gtcaggctga acagcaggca cgcttgcaat ctgaggaaga
    10201 ggcgcgccta aaagctgaag atgcagtgcg ccagcgcgct gagatggaag cgcgcattcg
    10261 cgctgaggtc gaggccaaga ttcgcgccga agaagctgag cgtcggcaag cggaagcttt
    10321 acatcgcgct gaagaggagc gcatacaaac cgagca
//
LOCUS       DASZZE010000281         4899 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_137551, whole genome shotgun sequence.
ACCESSION   DASZZE010000281 DASZZE010000000
VERSION     DASZZE010000281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4899)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4899)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4899
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_137551"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            228..1235
                     /locus_tag="VHD88_05465"
     CDS             228..1235
                     /locus_tag="VHD88_05465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21275.1"
                     /translation="MSANAAEVTARAGTSAPAVPKRITNAQTVCNERNEKGKACWGHL
                     KQLRTAGEPAEVHLRGDDVLFKCHRCGTLYMGPPLGHVRDPEKQTRFVEAELTELLQA
                     AGGTLPVIKKNDKGVYVLVEAGTEHAHTALAAKPSPTAGAASPPAVKTQPTTVTAQAT
                     SVAEKSMAAPAGPKPAAQPDRNLNRRSTYAGVLDSGPVPGETKEQKIERLAKVVAGAK
                     QRAEEGGTTEHAPNTAAVTVVNSSADADAHRPATEAQASTGPATPADLAPDTVAPAVS
                     STPTTSQSGEADRTLMKRSTYAEVVDTGPIAGETHEQKIERLTKLAAAAKQRSEEQGA
                     A"
     gene            1572..1880
                     /locus_tag="VHD88_05470"
     CDS             1572..1880
                     /locus_tag="VHD88_05470"
                     /inference="COORDINATES: protein motif:HMM:TIGR02607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antitoxin"
                     /protein_id="HVS21276.1"
                     /translation="MKTTTKAKAKMYNPPHPGEVLKQLCLEPLGLTVSEAAAALDVSR
                     KTLSAILNRRAGITPEMALRLSIAFNTTAESWLLQQIQYDLWRAEHRRKKLRVERLAA
                     "
     gene            complement(1877..2890)
                     /locus_tag="VHD88_05475"
     CDS             complement(1877..2890)
                     /locus_tag="VHD88_05475"
                     /inference="COORDINATES: protein motif:HMM:NF020133.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21277.1"
                     /translation="MIIESSAPTRVDLAGGTIDIWPLYLFHPGAMTVNFALSLRARVR
                     IETHNDNRVILESRDRGVRLETTLDRIDELASDVKLELVSKMVHFFRPEIGFHLMAHS
                     EAPAGAGISGSSALAIALIGALNRLVGNRYDERKFITIAANIETTVIKVPAGFQDYYP
                     AFFGSTSCIHFRPDGIEREHLAIDERELQRRIVICYTGEPRHSGINNWEVFKRHIDGD
                     EELFAIFERIRDAAAQMCAALLANDWNGVAETMRAAYPNRKRLAPGITTPQMDRLVEK
                     ALANGAEAAKVCGAGGGGCIAFLCDPERKQDVERALAEEEGVEILKWNVSREGLVVSE
                     NGV"
     gene            complement(2993..3670)
                     /locus_tag="VHD88_05480"
     CDS             complement(2993..3670)
                     /locus_tag="VHD88_05480"
                     /inference="COORDINATES: protein motif:HMM:NF020893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HVS21278.1"
                     /translation="MTSLHFLSQLIEQYGLYAVFFLAMIEGDITLLLAGVLAHNAFFG
                     DYSFARVLLWGTLGGVASDHIAYAAGRGFGKTVRGFRLYRGAKPRLERLTDRFGTLSI
                     FLSKYIYGLRWASCTFYGVGRMRYLRFLPLSLASCFLWVFVLSGVGYFFSSAVMGLIG
                     DFRHAGKILLVIVIVGVVGFYLIKRVWLSKRVEEAKPERLQEFEHAAIESLKELKEEI
                     RGKIHLK"
     gene            complement(3742..4242)
                     /locus_tag="VHD88_05485"
     CDS             complement(3742..4242)
                     /locus_tag="VHD88_05485"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HVS21279.1"
                     /translation="MADATQDKTALPELRQILLPTDFSGCANYALPYAAAIARATKAT
                     IICLYVVEPVVPAVGYSGLAEPLSISDVSEKLEDSAERELPKLAECEEFVGLGVEEVI
                     VHGAAAAEIVRVAAERKVDLIVISSHGRTGLGRIIFGSTAEAVVRHASCPVLVVKPPP
                     DEESSA"
     gene            4380..>4899
                     /locus_tag="VHD88_05490"
     CDS             4380..>4899
                     /locus_tag="VHD88_05490"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HVS21280.1"
                     /translation="MPFNSKSENNFAGIEIGGTTMRAIVISETGEVIARREAAYQPED
                     LVPEINKLVSELREAGTLKSVGVGIPGLVNRETDRVLISTGLPSVVRGDLHSELMKET
                     GLRFELENDANAAAYGEYKAGAGREARDIFYIGIGDSIGGAIILDGKLWIGASGCAGE
                     VGHITINTEGAEC"
BASE COUNT         1179 a         1394 c         1376 g          950 t
ORIGIN      
        1 gtcggcgccg cacaacgccg gggatgtagc gccatagcgc gccgaaagaa tctttgagca
       61 tgagttagtt agcatatcac ggtgttgcgc gcgacatgct cgaagcttgt cgccatcatg
      121 atgaccatca ttgacggcac tcgcatctgt cattaagatt ctcggagagt ctcctaatcg
      181 actttcgagt tttcatcaca cgaaaccagg gagcagagtc gaacgctatg tcagcgaacg
      241 ccgcggaagt tacagccaga gccggaacat cggcgccagc cgttccaaaa cggatcacga
      301 acgcgcagac tgtctgcaac gagaggaatg aaaaaggcaa ggcgtgctgg gggcacttaa
      361 agcagttgcg caccgctggc gagccggccg aagttcacct gcgcggcgat gatgtgctct
      421 tcaagtgcca caggtgcggc acgctctaca tgggcccgcc gctcggtcac gtccgcgatc
      481 ccgaaaagca aacccgtttt gtcgaagctg agttaacgga acttctgcaa gctgccggcg
      541 gcactctgcc ggtgatcaag aagaacgaca aaggcgttta cgttctggtt gaagctggaa
      601 ccgagcatgc gcacactgcg ttagccgcaa agccgtcgcc gactgccggc gcggcatcgc
      661 cgcctgcggt taagacgcag ccgactactg tgacagccca ggcaacttcg gtagctgaga
      721 agtcgatggc tgcgccggct ggtccaaagc ccgcggcgca acccgaccga aatttgaatc
      781 gtcgatcgac ttacgcaggt gttctcgaca gtggaccggt acccggtgaa acaaaagagc
      841 aaaagatcga gcgcctggcg aaagtggtcg ccggagcaaa gcaacgtgct gaagaaggcg
      901 gcacgacgga acacgcgccg aacactgcgg cagttaccgt cgtgaattct tccgccgacg
      961 ccgacgcgca tcgcccggca acagaggctc aggcgtcaac cggcccggca acaccggctg
     1021 atctcgcgcc ggatacagtt gcgccggctg tctcgtccac gcctacgaca tcgcagagcg
     1081 gcgaagcaga tcggacgttg atgaagcgat cgacttacgc tgaggttgtg gatactggac
     1141 caattgcagg agagactcac gaacaaaaga ttgagcggct aacgaaactc gctgccgcgg
     1201 cgaagcaacg atcggaagag caaggcgcag cctagccgtt cggatctgca ccccagtgtt
     1261 ctcggtttct ctgaattgta gccgcgtaac gacataggtt acacttgcgg ttgtgataaa
     1321 aagctttcgg cacaaagggc gaacgcttct tcacgacggg aagtaaatca ggaatacaag
     1381 cgaaacacgc taatcggttg cgattgatct tgggccgact aaatgtggcc aatgaagcgc
     1441 gagacgtgaa cttgccgggt cttgatcttc atcgcttgaa aggcgagcgg cacgggacgt
     1501 gggccgtcag tgtaagcggc aactggagag taacctttca gttcgccgag aagaatattg
     1561 gaacgtgaat tatgaagact accactaaag caaaagctaa gatgtataac cctcctcatc
     1621 cgggtgaagt cttgaagcaa ctctgcttgg agcctttggg gctaaccgtt agcgaagccg
     1681 ccgcggcgtt ggatgtgagc cgcaagacat tatcggcgat cttgaatcgg cgggcaggca
     1741 tcacgcctga gatggcatta aggttgtcga tcgccttcaa taccacagca gagagttggt
     1801 tactgcagca gattcaatac gacttgtggc gagccgagca ccgacgaaag aaactgcgcg
     1861 tggaacgctt ggctgcttag actccattct cgctgaccac caatccctcg cgtgaaacgt
     1921 tccatttcaa aatctctacg ccttcttctt ctgccaaagc tcgctcgacg tcttgtttcc
     1981 gctctggatc gcacagaaac gcaatacagc caccgccgcc cgcgccgcag accttcgctg
     2041 cttccgcgcc attcgcaagc gctttctcga ccagcctgtc catttgtgga gtcgtaattc
     2101 cgggcgcgag tcgtttgcga ttcggatagg cggcgcgcat cgtctcggcc actccgttcc
     2161 aatcgttcgc gagcaaagcc gcgcacatct gcgcggccgc gtcgcgaatg cgctcgaaga
     2221 tcgcaaacaa ctcctcgtcg ccgtcgatgt gacgcttgaa aacctcccag ttgttgattc
     2281 ccgaatgtcg cggctcgcct gtgtaacaga tcacgatgcg ccgttggagt tcgcgttcgt
     2341 ctatcgcgag gtgctcacgc tcgatgccgt cagggcgaaa gtgtatgcag gaggtcgagc
     2401 cgaaaaacgc cggatagtaa tcctgaaaac cggcgggcac tttgatgaca gtcgtttcaa
     2461 tgttcgcggc aatcgtaatg aacttgcgct cgtcataacg attcccaacc agacgattaa
     2521 gcgcgccgat cagcgcaatc gccagcgccg atgaacccga gatgcccgcg ccggccggag
     2581 cttcgctgtg cgccatgaga tgaaaaccga tctcgggtcg gaagaaatga accatcttcg
     2641 aaacgagctc gagttttaca tcgctcgcca gctcatcgat gcgatcgaga gtcgtttcca
     2701 aacggacgcc gcgatcgcgg gattccagga tgacgcgatt gtcgttgtgc gtttcgatgc
     2761 gcacccgcgc gcgcagcgac agcgcgaaat tgacggtcat cgcgccggga tgaaacaggt
     2821 agagcggcca gatgtcgatg gtgccgcccg ccagatcgac gcgggtcgga gccgatgatt
     2881 cgatgatcac gatttcaaat ttgagatttc agattcaaga ttcaaggctc aagtcctaag
     2941 actcaagact taagactcaa gattcaagag aagattcaag atcggcgatg cgctacttca
     3001 aatgaatttt cccccgaatc tcttctttca actctttcaa gctttcgatc gcggcgtgtt
     3061 cgaattcctg tagccgttcc ggcttggctt cttccacccg cttcgacagc cagacgcgct
     3121 taatcagata gaaaccaacg actccaacga tcacgattac caacagaatt ttcccggcat
     3181 ggcggaaatc gccaatcaat cccatcaccg cgctgctaaa gaaatacccg actccgctga
     3241 gaacaaaaac ccaaaggaaa caactggcca acgagagcgg aagaaaacgc aagtagcgca
     3301 tgcggccgac gccgtagaac gtgcatgacg cccaacgcaa accataaatg tatttcgaaa
     3361 gaaagatcga gagcgtgccg aagcgatcgg tgagtcgctc gagtcgtggc ttcgcgccac
     3421 gataaagtcg aaagccgcga actgtcttgc caaagccgcg gcccgccgca taggcgatgt
     3481 ggtcgctggc gacgccgccc agcgtgcccc aaagcaacac gcgcgcgaag ctgtagtcac
     3541 caaagaaagc attgtgggcg agcacgccgg ccaggagcag cgtgatgtcg ccttcgatca
     3601 tggcgaggaa gaatacggca tagaggccgt actgttcgat caactgagag agaaagtgga
     3661 ggctggtcat gaaacaacag tgctcagtgg ttagttttca gtgatcagca gtaggtagct
     3721 tctcggtgtt gaccgctgcg gctatgcaga actttcttca tcaggtggag gtttgactac
     3781 cagaacagga caactggcat gacgcacgac cgcctccgcg gttgatccaa aaatgatgcg
     3841 gcccaggccg gtgcgtccat gcgacgaaat cacaatcaag tcaactttgc gctcggcggc
     3901 cacacgcacg atctctgcgg cggcggcgcc gtggacaatc acttcttcga cacccagtcc
     3961 gacgaattct tcgcattcgg caagttttgg caactctcgc tcggccgagt cttccaactt
     4021 ttcactaaca tccgaaatcg acagcggctc ggctaagccg ctgtaaccga ccgccggaac
     4081 cactggctca accacgtaca ggcaaatgat cgtcgccttt gttgcgcgcg cgatcgccgc
     4141 cgcgtaaggc agggcatagt ttgcgcagcc gctgaaatcc gtcggcaaca aaatttgccg
     4201 aagctccggt aatgcggtct tgtcttgagt tgcgtcggcc atggctcgag ggcggaggga
     4261 attctacacg cagaacacgc ggtttgacag cccctccgcc cttttataag atcacggcga
     4321 aatccctgcc ctgctctacc aagcacttgc gaacaagcac ttgcgaaagg cttccgcgca
     4381 tgccgtttaa ctctaagagc gaaaacaatt ttgccgggat cgagatcggc ggaaccacga
     4441 tgcgcgccat cgtcatatct gagacgggag aagtaatcgc gcgccgcgaa gcagcatacc
     4501 aacccgaaga cctcgttcca gaaatcaaca aactagtttc agaactacgc gaagccggaa
     4561 cgctcaagtc ggtcggtgtc ggcattccgg gtttggtcaa ccgcgaaaca gaccgagtgc
     4621 tgatctcgac cggcttgccg tcagtcgtgc gcggcgacct tcattctgag ttgatgaaag
     4681 aaactggatt gcggttcgag ctggagaacg acgccaacgc tgccgcttac ggcgagtaca
     4741 aagcgggcgc aggccgtgaa gcgcgcgaca ttttttatat cggcatcggc gactcgatcg
     4801 gcggcgcgat cattctcgat ggcaagctct ggattggcgc atcgggctgt gccggcgaag
     4861 tcggtcacat caccatcaac accgaaggcg ctgaatgcg
//
LOCUS       DASZZE010000282         1846 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_251408, whole genome shotgun sequence.
ACCESSION   DASZZE010000282 DASZZE010000000
VERSION     DASZZE010000282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1846)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1846)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1846
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251408"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..316
                     /locus_tag="VHD88_05495"
     CDS             <1..316
                     /locus_tag="VHD88_05495"
                     /inference="COORDINATES: protein motif:HMM:NF015736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DnaB-like helicase C-terminal domain-containing
                     protein"
                     /protein_id="HVS21281.1"
                     /translation="SRAPENRTDHRPQLADLRESGAIEQDADLVAFIYREEQYNRTDE
                     NKNIAELIVAKQRNGPTDTVYLAFLNQFARFTDLERDALGTYLNRFDRSKGSPRISRG
                     GG"
     gene            582..1736
                     /gene="alr"
                     /locus_tag="VHD88_05500"
     CDS             582..1736
                     /gene="alr"
                     /locus_tag="VHD88_05500"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008784 - alanine racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HVS21282.1"
                     /translation="MTDADVGHRPTWAEIDLDALAQNFRVIRDHVGRDVKVMAAVKAN
                     AYGHGAVECARRLEDEGVDWFGVALPEEGIELRQARVTKPILCLGGFWKGQETACLRE
                     NLTPVVYRVDMIDSLNRAAEDAGVVAHVHVKVDTGMGRLGVRYEAVAEFCDALAGFRN
                     VRLDGVMTHLAAADDQNRESFTRQQLDRFKRAVNVFRERGFTPSCVHAANSAATFAFP
                     ESWGNMVRPGGTLYGFCRDVLPPQVERPPLRPVMSVRSRIMLLKPVGKGEELGYDCTF
                     ETTRESLIATIPIGYDDGYTRALSNRGRVIVRGKFAPVVGRVSMDLTLIDVTDVRDVS
                     LDDQVTLLGRDGELSITAEDVAELAGMISYEIACGISGRVPRIYLSNDGI"
BASE COUNT          379 a          481 c          569 g          417 t
ORIGIN      
        1 atcgcgcgcg ccggagaatc gcacggatca ccggccgcag cttgccgatc tgcgtgagtc
       61 gggcgccatc gaacaagatg ccgacctggt cgctttcatt tatcgcgaag agcaatacaa
      121 ccgcactgac gaaaacaaga atatcgcgga gctgatcgtt gccaaacaac gcaacgggcc
      181 gaccgacact gtgtatctcg ccttcctcaa ccagttcgcc agatttaccg atctggaaag
      241 agacgcgctc ggtacttatc tcaaccggtt cgatcgctcg aagggctcgc cgcgcatcag
      301 tcgtggcgga ggttagtttt agtcgacgct gattaccatc caacaaaatt tggagtgcgc
      361 cgccattagc ggcgctttgg attttgtgct tcccctctcc cggtcggaga ggggttaggg
      421 gagagggcat tggccaacgc atacatgagc cctccccaac ccctcccaaa gggaggggct
      481 tgcttcttaa gtccgccaat ccaccgctgc cgaccacgca atctcgctgc ttcgcttttc
      541 tgttttgcct gaattatggt tgactgttac gccaaacaat catgactgac gcagacgttg
      601 gccatcgccc gacctgggcc gagatcgatc tcgatgcgct cgcgcaaaac tttcgcgtga
      661 ttcgtgatca cgtcggccgc gacgtgaaag tgatggccgc cgtgaaagcg aatgcctatg
      721 gccatggcgc ggtggaatgc gcgcggcgtc tggaagacga aggcgtcgac tggtttggcg
      781 tagcgctgcc ggaagaggga attgagctta gacaagcccg cgtcacgaaa ccgattctat
      841 gtctcggagg gttttggaaa ggtcaagaga ccgcgtgctt gcgagaaaac ttgacgccgg
      901 ttgtatatcg cgtcgatatg atcgattcgc tcaatcgcgc ggcggaggat gcgggagttg
      961 tggcgcacgt tcatgtgaaa gttgacactg gcatggggcg tttgggtgtt aggtatgagg
     1021 cggtggcaga attctgcgat gcgcttgcag ggttcaggaa cgttcgtctt gatggagtta
     1081 tgacgcatct cgccgccgcc gatgatcaga atcgcgagag ctttaccagg cagcaactcg
     1141 atcgcttcaa gcgagcagta aacgtgtttc gcgagcgcgg tttcacgcca agctgtgttc
     1201 acgccgcgaa ttcggcggcg acgtttgctt tccctgagtc gtggggcaat atggtgcgtc
     1261 ccggtggaac tttgtatggt ttttgtcgcg acgtactgcc gccgcaagtt gaacggccgc
     1321 ctttgcgccc ggtgatgtca gtgcgttcgc gcatcatgct tctgaagccg gtcggcaagg
     1381 gcgaagagtt gggctacgac tgtacgtttg agacaacacg cgaatcgttg atcgccacca
     1441 tcccgatcgg ttatgacgat ggctacacgc gagcgctgtc gaatcgcggt cgagtcatcg
     1501 tgcgcggaaa gttcgctccg gttgtcggac gcgtgtcgat ggacttgacg ctgattgatg
     1561 tgaccgacgt gcgtgatgtg tcgcttgacg atcaagtgac gttgctggga cgagatggcg
     1621 aactatcgat tacggcggag gatgttgcgg aactcgccgg catgatctct tacgaaatcg
     1681 cttgtggtat tagcggccgc gtgcctcgga tttatctcag caacgatggt atttagaggc
     1741 gggacttgtc ccgcccctca ggaattgggc ggacaagtcc gccctctaaa ctggtgagtt
     1801 gtgctaatgg agctcagcga attcaaagta aaggtgaacg aaggcg
//
LOCUS       DASZZE010000283         7029 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_26825, whole genome shotgun sequence.
ACCESSION   DASZZE010000283 DASZZE010000000
VERSION     DASZZE010000283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7029
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26825"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..322
                     /locus_tag="VHD88_05505"
     CDS             <1..322
                     /locus_tag="VHD88_05505"
                     /inference="COORDINATES: protein motif:HMM:NF024843.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="zinc-ribbon domain containing protein"
                     /protein_id="HVS21283.1"
                     /translation="SREIAMPDLEITCAECGNVFSFSESEQDYYRERGLSHPKRCKPC
                     RDARRANFGGSGSQQGGAERERFEIVCDQCGKPDSVPFKPQAGRPVLCGACFSASRAQ
                     NRGA"
     gene            complement(330..527)
                     /locus_tag="VHD88_05510"
     CDS             complement(330..527)
                     /locus_tag="VHD88_05510"
                     /inference="COORDINATES: protein motif:HMM:NF027249.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HVS21284.1"
                     /translation="MIIEQGERNYWPHLPDLPGCIATGKTIEELKQRMSEAIELHLRG
                     LREDGLPIPEPTSLAEYVEAA"
     gene            complement(791..1759)
                     /locus_tag="VHD88_05515"
     CDS             complement(791..1759)
                     /locus_tag="VHD88_05515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21285.1"
                     /translation="MGKSLMQNSNGLNTGGIGWLGFELSVLRRLKFRSVALPLAGEPN
                     LGLYLKRWKARVAANDPAQWAWTKSLAFIENNSETLTEQDLDIVLDDAYVPRNYFHNP
                     TLLTWFNETDAWWFDNVRANAERLASPYKRALALALGMATGDYVFSFNLDTRDLRQPL
                     SLSNVFRRVWHTLASPVNNSQRNTSSNQQARNFLAELYDTDLLFLRLPRPARASDSRN
                     ARVLSWREEWLRQGKGFLGEQTKDRAGKVVGHVETKEQYLGLIEDLMHTAAHLPLWAI
                     EGVSDGFVSTDELVECVGSARKIDAIYTKDFSELLGIQAVIITAAA"
     gene            complement(1791..2477)
                     /locus_tag="VHD88_05520"
     CDS             complement(1791..2477)
                     /locus_tag="VHD88_05520"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HVS21286.1"
                     /translation="MSVETIDSEQLTVIEVFRNLGSSADEFECYQNPHAARIAVIADQ
                     LARSFNLGARDRFSLRIAALAHDLGQVVMARDYIQRPGPLTEDERIDLARHPLLGERE
                     AAGSGADRGAQLLVRWHHEWWNGNGYPDGLRFEQIPLGARILRVADAYASLTDARPFR
                     EAYSERQSREHLHEWVGLEFDPRVVQALLSLEPIKELQSYAPVVAAPPETSAMSDEMI
                     SRLQALASEL"
     gene            complement(2480..3976)
                     /locus_tag="VHD88_05525"
     CDS             complement(2480..3976)
                     /locus_tag="VHD88_05525"
                     /inference="COORDINATES: protein motif:HMM:NF025690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4388 domain-containing protein"
                     /protein_id="HVS21287.1"
                     /translation="MEGLLRAHPLAELIREISAAGVSGALRLARERAKAAIYFDDGAL
                     VFAASNLRAHRLSASLKGSRILNEAQIAKLPRTESDEELANTLVQRGLLTSETLAKIR
                     GNQVSDVLRVTLLWTEGTWEFDPRVRLADDVRVRVEVSRLLLECARHLPASFLASRFD
                     GTNGTFSQAENNGNTANLLPAEAFVFSRATAPVTLAELTALSGLGEEESLRAMYALLL
                     SGHLRLSNWSRTFISGISDAPRVKQSQRRPAAVSETPNAATEEIDEASELQALFARLQ
                     NATDHYEVLNLGRLASAEEIKSAYHTLARRYHPDRFHQSAPDLRSRVDSAFARIAQAY
                     ETLGDQSLRGVYDAKRASKPSRAGAHKPLTAGESPNGGSRISPGSEANRAESSFQRGV
                     AALKQNRREEAIRFLAEAAMLAPREARYRAHYGHALIGQANTRRIAEAELNAALALEP
                     DNVAYRIMLAELYKQLGLRRRAEGELERALATDPKNTAARTMLSSLKR"
     gene            complement(4130..4261)
                     /locus_tag="VHD88_05530"
     CDS             complement(4130..4261)
                     /locus_tag="VHD88_05530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21288.1"
                     /translation="MIRPLQGRKVMLAFDPVALPPAIESVRYADAQTFVIWLPPGCR"
     gene            4478..4765
                     /locus_tag="VHD88_05535"
     CDS             4478..4765
                     /locus_tag="VHD88_05535"
                     /inference="COORDINATES: protein motif:HMM:NF025392.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4242 domain-containing protein"
                     /protein_id="HVS21289.1"
                     /translation="MAVYMVDRDLPGIEMDQLAAAQKAAIETGKQMTAAGKDVRYLRS
                     TFVPGEAHCMCLFEAANPELVKELNETAKIPFTRIVEALDLTPETSSAAGK"
     gene            complement(4812..5273)
                     /locus_tag="VHD88_05540"
     CDS             complement(4812..5273)
                     /locus_tag="VHD88_05540"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HVS21290.1"
                     /translation="MSELVQLDLRDIDFKNKLLRVLGKRRKERIVPFGDPALKALKDY
                     LTVRDGFLEKAPLEKRDSQALILNYQGTRMTTRSVGRLIEKYIRLCSGIHDISPHALR
                     HSFATHLLDSGADLRDIQELLGHARLSTTQIYTHVSMEKLIEVYDKAHPKA"
     gene            complement(5159..5734)
                     /locus_tag="VHD88_05545"
     CDS             complement(5159..5734)
                     /locus_tag="VHD88_05545"
                     /inference="COORDINATES: protein motif:HMM:NF024502.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HVS21291.1"
                     /translation="MLDSFLTQFLDHLRYERNVSAHTLRNYASDLEQFFEYLAPADPK
                     TGKRTEPDIKQIDHITIREWLSNLHSDHKKKTSIARKLAALRTFFQFLVREGFVELNP
                     AKLVATPRKEKKLPVHLSVEEAVRFIETPDRETDLGKRDRAILELLYATECVCRSWSS
                     STCATSISRTSCCACWASGAKNASCRSAIRR"
     gene            complement(6151..>7029)
                     /locus_tag="VHD88_05550"
     CDS             complement(6151..>7029)
                     /locus_tag="VHD88_05550"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HVS21292.1"
                     /translation="DTGQANGEDVTDVVLVSSNLVPVPATVVDNRGVAVMNLKLEDFE
                     LRVDGQPLSISDISRADTPVRMTMLFDNSGSLSESRDFEKRAAIRFFHNVMRPSDQAA
                     IYSVSTTVELSQPMTNDVRRLEQTIQNFGKPDGATSLYDAIFDALAYLKPYTGRRVVV
                     IVSDGRDTTSRLPDHDFDNTLRRLLTDDCQVYVVQTGVYDNANVRDLAAERRMQEFAA
                     QTGGAAYIPKSVGELDDAFAQISADLAQQYILSYYPATDKRDGRYHIIAVSVKKQPNA
                     RVRARKGFLVKPHERM"
BASE COUNT         1489 a         1990 c         2006 g         1544 t
ORIGIN      
        1 ttctcgggag atagcgatgc cagaccttga aatcacttgc gccgaatgtg gaaatgtttt
       61 ttcgtttagt gagagcgaac aggattatta tcgcgagcgt ggcctgagtc acccaaagcg
      121 ctgcaagcct tgtcgcgacg cgcgccgcgc caactttggc ggtagcggtt cacagcaggg
      181 aggggcagag cgagagagat tcgaaatcgt ttgcgatcaa tgcggcaagc ccgacagcgt
      241 gcccttcaaa ccgcaggcgg gccggccagt attgtgcggt gcctgcttta gtgcgagccg
      301 ggcacagaat cgcggggcgt gaaaaggacc taggctgctt cgacgtactc agcgaggctc
      361 gtgggctctg gaatgggtaa gccatcttcg cgcagaccgc gcaaatgcaa ttcgattgct
      421 tcactcattc gttgttttag ttcttcgatg gttttgcctg tggctataca ccccggcaag
      481 tcaggcaagt ggggccaata gttgcgctca ccctgttcga tgatcattgc ataacgcata
      541 ttgtctgaac tccttacttc ttcaatcctg cttgcgtcaa gatactcttc aaagtcttcg
      601 ggtggacatc atctgtccgg acatgtgacc cggcccgcct tggccggatg tttgaattga
      661 cggtggctgc ccgcagtcgt gaccaggtgc cacccgtcat ctttcagcaa cctcaaaacc
      721 tcacgaacct tcaccctgcc tcatatgata ggtgacctaa attgaaatcg gaagtggctc
      781 cgcgagtgac tcacgctgcc gccgtaataa tcaccgcctg gattcctaac aactctgaga
      841 agtccttcgt gtagatagcg tcgatcttgc gcgcgctccc gacgcattcc accaactcat
      901 ccgtcgaaac aaaaccgtcg ctgactcctt cgattgccca cagcggcagg tgcgcggcgg
      961 tgtgcatcag gtcttcgatc agtccgaggt actgctcttt ggtctcgacg tgaccgacaa
     1021 cttttcccgc gcggtctttc gtctgctcgc ccaaaaaacc cttcccttgg cgcagccatt
     1081 cttcgcgcca cgacaaaacg cgagcgtttc ggctatcgct agcgcgcgcc gggcggggaa
     1141 gtcgcaggaa cagcaaatcg gtgtcgtaaa gttcagccag aaagtttctg gcctgttgat
     1201 tcgagctggt gttccgttgt gaattgttga ccggcgacgc gagcgtgtgc cagacgcggc
     1261 ggaagacgtt tgagagcgac agcggctgtc gcaaatcgcg cgtgtcgaga ttgaacgaga
     1321 aaacatagtc gcccgtcgcc atgcccaggg ccagagctaa tgcgcgtttg taaggtgacg
     1381 ccagccgctc agcattggcc cgcacgttgt caaaccacca ggcgtcggtt tcgttgaacc
     1441 aggtcaacaa tgtcgggttg tgaaaatagt tgcgcggtac ataagcatcg tcgagaacta
     1501 tatccaaatc ctgttcggtg agcgtctcgg aattattttc gatgaaggcc agcgacttgg
     1561 tccaggccca ttgcgccggg tcgtttgccg cgacgcgcgc tttccagcgc ttcagataca
     1621 gtccgaggtt tggctcgccc gccagcggca aagccaccga gcgaaactta agacggcgca
     1681 gcacactcag ctcgaaaccg agccaaccga tgccgccagt gttcagacca ttagaattct
     1741 gcattagtga tttacccacc cgctaacgca ggcggtaccg acacgaccgc tcacaattcg
     1801 gaagccaaag cttgtaggcg cgagatcatt tcgtcagaca tggctgacgt ctcaggtggc
     1861 gccgcgacta ctggagcata agactgcaat tctttgatcg gttccagcga taacagagcc
     1921 tgcacgacgc gcggatcgaa ttccaggcca acccactcat gcaagtgttc gcgggactgg
     1981 cgttccgagt aagcctcgcg aaacggtcgt gcgtctgtca aagatgcgta ggcatccgcg
     2041 acccgcagaa tccgcgcgcc aagaggaatt tgctcgaatc gcaagccgtc cggataacca
     2101 ttgccgttcc accattcgtg gtgccaccga accaacagtt gcgcgccgcg atccgcgccg
     2161 cttccagcgg cttcacgctc gccgagcaag ggatgccgcg cgagatcgat gcgctcgtcc
     2221 tcagtcaatg gcccgggtcg ctgaatgtaa tcgcgagcca tcacaacttg gccgaggtcg
     2281 tgcgccagag ccgcgatgcg cagcgagaac cgatcccgcg cgccgagatt gaaagacctt
     2341 gcgagttgat cggcaatcac tgcaatgcgc gcagcgtgcg ggttttgata gcactcaaat
     2401 tcgtccgcgc ttgagccgag gttccggaaa acctcgatga cggtgagttg ctcgctatca
     2461 attgtctcga ctgacatttc tatctcttca aactcgacag catggtgcgc gctgctgtgt
     2521 tcttgggatc ggtggccaac gcgcgctcga gttcgccttc cgcgcgacgg cgcaatccca
     2581 attgtttgta aagttcggcc agcataattc gataagcgac gttgtcgggc tcaagcgcga
     2641 gggccgcgtt aagctcggcc tcggcaatgc gccgcgtgtt cgcttgtccg atgagcgcgt
     2701 ggccgtagtg agcgcgatag cgagcctctc gcggcgccag catcgccgcc tctgccagaa
     2761 aacgaattgc ctcttcgcgc cgattctgct tgagcgccgc gacgccacgt tgaaaactcg
     2821 attcggcacg gtttgcttca gacccaggcg aaattcttga cccaccgttc ggactttcgc
     2881 ctgcggttaa tggtttgtgc gcgccggcgc gcgatggctt cgaagctcgc ttcgcgtcgt
     2941 aaacaccgcg caaagactga tcgcccagcg tctcgtaagc ctgggcgatg cgggcaaagg
     3001 ccgagtctac gcggctgcgc aggtcgggcg cactctgatg aaaacgatcg ggatgataac
     3061 gtcgcgcgag cgtgtgatat gcgctcttga tctcttcagc gctggccagc cgtccgagat
     3121 tcaggacctc gtagtggtcc gtcgcgttct gcaatcgcgc gaacaacgct tgcaactcgc
     3181 tcgcttcgtc aatctcttcg gtggcggcat taggtgtttc ggataccgcc gcaggccgcc
     3241 gctgactttg ctttactctg ggcgcgtccg aaatgccaga gatgaatgtg cgagaccagt
     3301 tactcagtcg caagtgaccc gacagcaaca acgcatacat ggcgcgcaga ctctcttctt
     3361 cgccgagccc gctaagcgcg gtcaactctg ccagcgtgac gggcgccgtg gctcgcgaaa
     3421 aaacgaatgc ttcagcgggg agaagattcg ctgtgtttcc attgttctct gcctgcgaga
     3481 acgtgccgtt cgtcccgtca aagcgcgaag cgagaaaact tgccggcaga tggcgcgcgc
     3541 actctaataa caaccggctc acttcgactc gaacgcgcac gtcgtcagcc aaacgcacgc
     3601 gcggatcgaa ttcccaggtt ccttcagtcc ataacagtgt cactcgcaac acgtccgaaa
     3661 cttgattgcc gcgaatcttc gccagcgttt cggaagtcag cagtccgcgt tgcaccagtg
     3721 tgttggccag ttcttcgtct gactcggttc gtggaagttt tgcgatctgc gcctcattca
     3781 aaatcctgct gccctttaga gatgctgaca gacgatgcgc gcgtagattg gacgccgcga
     3841 aaaccaacgc gccgtcatcg aaataaattg ccgccttggc ccgttcgcga gcgagccgca
     3901 aagcacccga cacgcccgcg gcgctgatct cgcgaatcaa ttcggctagc ggatgtgccc
     3961 tgagtagtcc ttccatgcaa tcgaggaatc ggcgtttctt tggagcgcag gcatcctgcc
     4021 tgcggtacgc cggcatcctt gccggccgtc caactcctgt tctgaatcat aacgcacgga
     4081 agtagagcgg cgaaagtgag aaaattgctg acgagtaggc agcaagtagt cagcggcaac
     4141 caggtggcag ccagatcacg aaggtttggg cgtccgcgta gcggacggat tcaatagccg
     4201 gtggcagcgc caccggatcg aaagccaaca tgaccttgcg accctgtaag ggtcgaatca
     4261 aagtttgggg attgtgcgac cctttcaggg tcgggctgaa tgaggcgctg tgatccgtgg
     4321 gcgatgccca cggctattca attcaaccgc ttcgcggttc agcgctcttg tcgacgactg
     4381 cagctaagct ttcggatgtg ccttgtagta aactacgatc agtttagaag cttcaatgaa
     4441 aagcgtagtc ctaactaaat gaaaaggaga aacgacaatg gctgtttaca tggtggaccg
     4501 tgatcttccc ggaatcgaaa tggaccagtt ggccgcggca cagaaggcgg cgatcgaaac
     4561 cgggaaacag atgaccgccg ctggcaagga cgttcgttac cttcgcagca cattcgtgcc
     4621 cggcgaagcg cactgcatgt gcctgttcga agccgcaaac ccagagctgg tgaaagagct
     4681 caatgaaact gcgaagattc ctttcactcg catcgtggaa gccctcgacc tgacgccgga
     4741 gacctcaagc gcggctggca agtaagagac ttgtgaggcg tagcgaagca ttaccgtagt
     4801 tccccgcgga gctaggcctt gggatgtgcc ttgtcgtaaa cctcgatcag cttttccatc
     4861 gaaacgtgag tgtagatttg tgtggtggaa aggcgagcgt ggcccagcag ctcctgaatg
     4921 tcgcgcaagt cggcgccgct gtcgagcaaa tgagtagcga acgaatgacg cagcgcgtgc
     4981 ggactgatgt cgtgaatgcc ggagcagagt cgaatgtatt tttcgattag acggccaact
     5041 gagcgcgttg tcatgcgcgt accttgatag ttcaagatca aggcttgcga gtcacgcttt
     5101 tccagcggag ctttttcaag aaaaccgtcg cgcactgtga ggtaatcctt caaagccttc
     5161 aacgccggat cgccgaacgg cacgatgcgt tctttgcgcc gcttgcccaa cacgcgcagc
     5221 agcttgttct tgaaatcgat gtcgcgcagg tcgagctgga ccagctccga cacacgcact
     5281 ccgtcgcgta aagcaattcc agaatcgctc ggtcgcgttt gcccaagtcg gtttcgcggt
     5341 ccggcgtctc gatgaagcgg actgcctctt ccacggacaa atgcaccggc agtttctttt
     5401 ccttgcgcgg tgtggctacc agcttcgccg ggtttagttc aacgaagcct tcgcgcacca
     5461 ggaattgaaa gaaggtgcgc agcgcagcga gctttctggc gattgaagtc tttttcttat
     5521 gatctgaatg caggttggaa agccattcgc ggatcgttat gtgatcgatc tgtttgatgt
     5581 ccggctcagt tcgttttcct gtcttcggat cagcgggcgc gagatactcg aaaaactgtt
     5641 ccaaatcgga agcgtaattg cgcagggtgt gcgcgctgac gttgcgctcg tagcgcaagt
     5701 ggtcgaggaa ttgagtgaga aacgagtcaa gcattgaggc aacgttacgc gccttgagat
     5761 aaccgccaat atcttatgaa agtttctaaa ccctccggta gcgaagtcag cgacaacgag
     5821 cgccggaggc gcggcatatg gtagccccgg gcgtgagccc ggggatcgcg atctatgaaa
     5881 aataaattag cccgcgaagc gggcgacata aaaagaagac ggttgtgatc tttgatactg
     5941 atatctgtcg ccccttcggg gctcacagga tcatttgatt ggatgttccc cgggctcacg
     6001 cccggggcta ctaatatgcc gcccgctccg cgggcttggt gaatcgcctt actttggatc
     6061 aaggaactca acagatacct tctcggataa cagcaatgaa cctctccatg cgctttggga
     6121 atgacttcat ttctttgcct cagatttacg ttacattcgt tcatgcggct tcaccaagaa
     6181 tccctttcgc gcgcgcaccc gcgcgttcgg ttgtttctta acgctcacgg cgatgatgtg
     6241 atagcgaccg tcgcgtttat cggttgccgg gtagtaactc aagatgtatt gctgtgcaag
     6301 atcggcggag atttgcgcga acgcgtcgtc aagctcgccc actgatttcg gaatgtaagc
     6361 cgcgccgccg gtctgtgcgg caaattcctg catgcgtcgc tcagccgcaa gatcgcgcac
     6421 gttggcgtta tcgtagacgc ccgtctgcac cacatagacc tggcagtcgt cggtcagcag
     6481 tcgccgcaac gtgttatcga aatcgtggtc gggcaagcga ctggttgtgt ctctgccgtc
     6541 ggacacgatt acaacgacgc ggcgtccagt gtatggtttc agataagcga gagcgtcaaa
     6601 gatcgcgtcg tagagagaag tcgcgccatc cggtttgccg aaattctgga tcgtctgctc
     6661 taacctccgc acgtcgttgg tcatgggttg cgagagttcg accgtagttg agactgaata
     6721 tatcgccgct tgatcgctcg gccgcatgac gttatgaaag aatcgaatcg ccgcgcgctt
     6781 ttcaaagtcg cgcgattcgc tgaggctgcc gctgttatca aacagcatcg tcatgcggac
     6841 gggcgtgtcg gcgcggctga tgtcgctgat cgagagcggt tgtccatcaa cgcgcaattc
     6901 gaaatcttcc agcttgagat tcatcaccgc cacgccgcgg ttatcgacaa ccgtggccgg
     6961 cacgggcacc agattcgaac ttacgagcac gacgtcggtc acgtcttcac cgttggcttg
     7021 tccggtatc
//
LOCUS       DASZZE010000284         1747 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_205272, whole genome shotgun sequence.
ACCESSION   DASZZE010000284 DASZZE010000000
VERSION     DASZZE010000284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1747
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_205272"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            90..>1747
                     /locus_tag="VHD88_05555"
     CDS             90..>1747
                     /locus_tag="VHD88_05555"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HVS21293.1"
                     /translation="MIHRLIELSLRNRGLVIAIYLGLAAWGYWALLRTPIDAIPDLSD
                     NQVIVFTDWTGRSPQEVEDQVTYPLVTNLQGLPGVRVVRASSAFSFSMINVIFEDNVD
                     LYWARTRVLERLNLVTKQLPAGVTPTLGPDATGVGQIFWYTLESDQMSLRDLRTLQDW
                     FVRYQLNSVPGVAEVASVGGYVQQYQIDVDPNKLRSYSLPLSMVVEAVERSNNNVGGN
                     VVEQSGQWSVVRGVGLIQSVTDVENIVLSAPNGIPIYVKNVANVKLGNAFRTGALDKD
                     GKEAVGGVVIARYGVNTLEVIDAVKQKINALQVGLPSGVRVVPFYDRTQLIQRATHTL
                     KRALIEELILVTLACIVFLAHFRSILIVTIPLPLAVLLAFLFMYYMGISSNLMSLSGI
                     AIAIGVLVDAGIVVTENAFRFIEQRKIDPKDRPLVWQTVLESTRLVGRPIFFSMAIII
                     LAFIPVFSLTGEEGKLFHPLAFTKTFAMVGATIIAVTLVPVLCTLLLRGKFHPEQANP
                     VMRALHFVYRPVLRFALNRRVLTVSVAALLCAGAIFLATGIGKE"
BASE COUNT          341 a          493 c          510 g          403 t
ORIGIN      
        1 aatgtcgaag tggcaggcga atggcaagcg cagcttgctt acgacggccc agcaggaacg
       61 gcgaagacga cgtttagcgt gacggcgcaa tgattcatcg tctaatcgaa ctcagcttgc
      121 gcaatcgtgg cttggtgatc gcgatctatc tcggtctcgc ggcctggggt tactgggcct
      181 tgctgcgcac gcccatcgat gcaattcctg acctctccga caaccaggtc atcgtgttta
      241 cggattggac tgggcggtcg ccgcaggaag tcgaagatca agtcacgtat ccgctggtca
      301 cgaatctgca agggctaccg ggcgtgcggg ttgtgcgcgc gagttcggcg tttagcttct
      361 cgatgatcaa tgtcatcttc gaagacaacg tcgatcttta ctgggcgcgg acgcgagtct
      421 tggaacgact gaatcttgtg accaagcagc ttccggcagg cgtcacaccc acgctcggcc
      481 ctgacgcgac cggcgtgggg caaatattct ggtacacgct tgaaagcgac cagatgagcc
      541 tgcgcgatct gcgcacactg caagactggt tcgtgcgcta tcaattgaac tcagtgcctg
      601 gtgttgcgga agtcgcgagc gtcggcggtt acgtgcagca gtaccagatc gatgtcgatc
      661 cgaacaagct gcgctcttat tcgttgccgc tgtcgatggt ggtcgaagcg gtcgaacgct
      721 ccaacaacaa tgtcggcggc aacgtcgttg agcaatcagg tcaatggtcg gtcgtacgcg
      781 gcgtcgggtt gatccaatct gtgactgacg tcgagaacat cgtgctcagc gcgccgaacg
      841 gcatcccgat ctatgtgaag aacgtcgcca atgtaaaact cggcaatgcg tttcgcaccg
      901 gtgcgctgga caaggacggc aaggaagcgg tcggcggggt cgtgatcgca cgctacggcg
      961 tgaacacgct cgaagtgatc gacgcggtca aacagaaaat caacgcgctg caagtcgggt
     1021 taccgtcagg cgtgcgtgtg gtgcccttct atgatcgcac gcagttgatt caacgcgcca
     1081 cgcacacctt gaaacgcgcg ctgatcgaag aactcatcct cgtcacgctg gcctgcatcg
     1141 ttttcctggc gcacttccgc tcgatcctga tcgtcaccat cccactgccg ctcgcagtgc
     1201 tgctggcatt cctgttcatg tactacatgg gaattagctc gaacctgatg tccctttcgg
     1261 gcattgccat cgccatcggc gtgctcgttg atgccgggat tgtggttacg gaaaacgcct
     1321 tccggtttat agaacagcga aagattgatc cgaaggatcg gccgctggtt tggcaaacgg
     1381 tgctggaatc cacgcggtta gttggacggc caatcttctt ttcgatggcg atcatcatcc
     1441 tggctttcat tccggttttc tccctcaccg gcgaagaagg aaagctcttt cacccgttgg
     1501 ctttcaccaa gacgttcgcg atggttggag ccacgattat cgcggtcacg cttgtgccag
     1561 tgctctgcac gctacttctg cgcggcaagt ttcatccgga acaggccaat ccagtgatgc
     1621 gcgctctgca ctttgtctac cggcccgttt tgcgctttgc gctgaaccgt cgcgtgctga
     1681 cggtatcggt cgccgctctt ctttgtgccg gtgccatttt tctcgccacg ggaatcggca
     1741 aggagtt
//
LOCUS       DASZZE010000285         3209 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_56014, whole genome shotgun sequence.
ACCESSION   DASZZE010000285 DASZZE010000000
VERSION     DASZZE010000285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3209)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3209)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3209
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56014"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..417)
                     /locus_tag="VHD88_05560"
     CDS             complement(<1..417)
                     /locus_tag="VHD88_05560"
                     /inference="COORDINATES: protein motif:HMM:NF012487.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21294.1"
                     /translation="MSTTATMIRSNEPEEIDVQSRSEHPGLARHSAGWIEVIAGSMFS
                     GKSEELIRRLRRAKIARQKVQVFKPEIDSRFSDDHIVSHSEMKHESANVRTAADVRAR
                     VEPDTQVIGIDEAQFFDNELIPIVNELAERGMRVIVA"
     gene            complement(477..2117)
                     /locus_tag="VHD88_05565"
     CDS             complement(477..2117)
                     /locus_tag="VHD88_05565"
                     /inference="COORDINATES: protein motif:HMM:NF014585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase B/oxoprolinase family protein"
                     /protein_id="HVS21295.1"
                     /translation="MRQFDPTTLEIYRALYTSVAEEMGVALRRTSFSPNIKERRDYSC
                     AVFDSSGRVIAQGDHMPVHLGSMPMAVAAALKEVEVGPGDVVALNDPFAGGTHLPDVT
                     LVMGVFGQSVGSRRQAAGNKSRSSPAPRFLPPAACLFYVANRAHHADIGGATPGSMGL
                     ATDVYGEGVRIPPIRIVRGGEICEDVMKLILANVRSSKERRADFEAQIGSLKTGATRL
                     LEIVERRGAKEAREYASHLISYSARMMRHAIASIPDGVYEAEDALDDDGIHENEIPIR
                     VRVTIKGDRVRVDFTGSAPQVAGAVNAVEAITVSAVSYVFRCLVGDIPASAGLIEPIE
                     VIAPPGTIVNAIHPASVAGGNVETSTRIVDTVFKALAQAIPERIPAASQGTMNNLTMG
                     GIDPRTGAEFSYYETVAGGMGARPSFDGMDAVHTHMTNSLNTPAEALEYAYPLRVRQY
                     RVRKGSGGKGKHKGGDGVMREIETLASARMSLLSDRRKRAPYGLQGGEAGALGRALII
                     RRDGREEQLASKGSWELQAGDRIRIESPGGGGFGNETV"
     gene            complement(2241..>3209)
                     /locus_tag="VHD88_05570"
     CDS             complement(2241..>3209)
                     /locus_tag="VHD88_05570"
                     /inference="COORDINATES: protein motif:HMM:NF039581.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase/oxoprolinase family protein"
                     /protein_id="HVS21296.1"
                     /translation="ACYGRSLLPTVTDAHVVLGHFPGSALLGGDFKLDEGRAREALDK
                     LAREMSVAVARRVSAVQAAQGVLDVVNTNMERALRHISVERGHDPRDFTLVPFGGAGG
                     LHAVELARALRIPRVLLPSSPGALSAIGVVTANVVKDQSRTVMLEATRGVEQKLARVF
                     REMEEQARSALRREGFSGSKQRHERSLAARYKGQSFELQIKQTSGDLASAFHRVHRVR
                     YGYAQEKNVVEIVSARVRSIGVVEKLKAARSRLARQSLAKPHDFTESYFEGKRIRAAV
                     YQRQELPAGARLRVPCIVAEYSATTLIPLGARVEVDGYRNLIIQVK"
BASE COUNT          665 a         1004 c          868 g          672 t
ORIGIN      
        1 ggcgacgatc acgcgcatgc cgcgttcagc gagttcgttg acgatcggaa tgagttcgtt
       61 gtcgaaaaac tgggcttcgt cgatgccgat aacctgggta tccggctcaa ctctcgcgcg
      121 cacgtcggcg gcggtgcgaa cgttcgcgga ttcatgtttc atctcggaat gcgagacgat
      181 gtgatcgtcg gaaaagcgcg aatcgatctc aggcttgaac acctgcacct tctgtcgcgc
      241 aatcttggcg cggcgcagac ggcgaatcag ttcttctgac tttcccgaga acatcgaccc
      301 ggcaatcact tcgatccagc cggcgctgtg acgcgcaagg ccaggatgct cgctccggct
      361 ttgcacatcg atctcttcgg gttcgttact tctgatcatc gttgcggtgg tgctcatgta
      421 tcgagtccgt tatctctttc gtataatttg tttgagagcg cgaatcgaag tctaattcaa
      481 acagtttcat tcccaaaacc gccaccgccc ggactttcga tgcggatgcg atcgcccgct
      541 tgcagttccc aacttccctt tgaagcaagc tgttcctcgc gtccatcgcg ccgaataatc
      601 aaagcccgac cgagcgcccc agcttcaccg ccttgcagtc catagggcgc acgcttgcgg
      661 cgatccgaca gcaaagacat gcgcgccgag gcgagagttt caatttcgcg catcacgccg
      721 tcgccacctt tgtgttttcc tttgccaccc gatcctttgc gaacgcggta ctgtcgcacg
      781 cggagcggat aagcgtattc gagcgcctcc gcgggtgtgt taagactgtt cgtcatgtgc
      841 gtgtgaaccg cgtccatgcc gtcgaacgac ggccgcgcgc ccatcccccc ggcaaccgtt
      901 tcgtagtaag aaaactccgc gccggtgcgc ggatcgattc cgcccatcgt caagttattc
      961 attgtgcctt gactcgccgc gggaatgcgt tcgggaattg cctgagccag cgctttgaaa
     1021 accgtgtcaa cgattcgcgt cgaagtctcg acgttccctc cagcgactga cgccggatga
     1081 attgcattaa cgattgttcc cggcggagca atgacttcga ttggctcaat caagccggcg
     1141 ctggcgggaa tatcgccaac caaacaacgg aagacgtacg aaacggcgga aacggtaatc
     1201 gcttcgaccg cgttcactgc gccggcaacc tgcggcgcgc tgccggtgaa atcaacgcgc
     1261 acgcgatcgc ctttaatcgt cacgcggaca cgaattggga tttcgttttc gtggatgcca
     1321 tcgtcatcaa gcgcgtcctc ggcttcgtaa acaccgtcag gaatcgaagc aatcgcgtgt
     1381 cgcatcatcc gggcagaata tgaaatcaag tgcgaagcgt actctcgcgc ttctttcgcg
     1441 ccacgacgtt cgacaatttc cagcaagcgt gtcgcgccgg tcttgagtga tccaatctgc
     1501 gcttcaaaat ccgcgcggcg ctctttgctg ctgcgcacgt tcgccaggat caatttcatc
     1561 acgtcttcgc aaatctcgcc gccacgaacg atgcgaatcg gcggaatgcg cacgccctcg
     1621 ccgtacacgt ctgtcgccag acccatcgat cccggcgttg cgccgccaat gtcagcgtgg
     1681 tgcgcgcggt tggcaacata gaaaagacag gcggcaggag gcaggaagcg aggggcagga
     1741 gaagaacgcg atttgtttcc tgcggcctgc cgtctgcttc ctaccgactg gccgaacacg
     1801 cccatcacca gcgtcacgtc cggcaaatgc gtgccgccgg caaacggatc gttaagcgcg
     1861 accacgtcgc cggggccaac ctcgacttct ttaagcgccg cggccacagc catcggcatt
     1921 gaaccgagat gcacgggcat gtgatcgccc tgcgcgatca ctcggcccga tgaatcgaac
     1981 accgcacatg agtagtcgcg gcgctccttg atattgggcg agaacgaagt gcgccgcagc
     2041 gcaacgccca tctcttccgc gaccgaagtg tagagtgcgc ggtagatttc caaagttgta
     2101 ggatcaaact gcctcattgg ctacctctca ggtcgggaag ggggcttgcc cccgctcctg
     2161 agtagtcttt ctaattgcat cctattatct gctctttttc acatcactgc gggggcaagc
     2221 ccccttcctg acttgcgaga ctatttgact tgaatgatca aatttctgta gccatcaact
     2281 tcaacgcgag cgcctaaggg aatcaatgtc gtcgccgaat actccgcgac gatgcacggc
     2341 acgcgcaagc gagcacccgc cggcaactct tgtcgttgat agaccgccgc gcgaatcctc
     2401 ttaccttcaa aatagctttc cgtgaaatcg tgcggctttg ccaagctctg ccgcgcaagc
     2461 ctggaccgtg cagctttcaa cttctcgacc actccaatcg atcgcacacg cgcgctaact
     2521 atttctacga cgtttttctc ctgcgcgtag ccatagcgca cgcgatggac gcgatgaaac
     2581 gctgaggcaa ggtcaccgct ggtctgcttg atttgtagct cgaacgactg gcccttgtaa
     2641 cgcgcggcca gcgatctttc atgacgctgc ttacttcccg aaaaaccttc gcgacgcaga
     2701 gcagagcgtg cttgctcctc catttcacga aatacgcgcg cgagtttctg ttcgacgccg
     2761 cgcgtggctt ccagcatcac cgtccggctt tgatctttca ccacattggc agtgaccacg
     2821 ccaatcgccg acagcgcgcc cggcgatgac ggaagaagca cgcgcggaat acgcagcgcg
     2881 cgcgccagct cgacggcatg caaaccacca gcgccgccga agggcactaa agtgaaatcg
     2941 cgcgggtcgt gaccgcgctc gacggaaatg tgacgcagcg cgcgctccat gttcgtgttc
     3001 acaacgtcga gcacgccttg cgctgcctgg acagcgctca ctctgcgtgc caccgcaaca
     3061 gacatttcac gcgcgagctt atcaagcgct tcgcgtgcgc ggccttcatc gagtttgaaa
     3121 tctccgccca gcaaagccga accgggaaaa tgaccaagca caacgtgcgc atcagtgacg
     3181 gtaggtagaa gcgatcgacc gtaacacgc
//
LOCUS       DASZZE010000286         2140 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_285992, whole genome shotgun sequence.
ACCESSION   DASZZE010000286 DASZZE010000000
VERSION     DASZZE010000286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2140)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2140)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2140
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285992"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..646
                     /locus_tag="VHD88_05575"
     CDS             <1..646
                     /locus_tag="VHD88_05575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21297.1"
                     /translation="FDWAFFRNDGDQFVKAERSLGSAGTLLSAGTTDELFWRDPFTTQ
                     FQNQARNFADRTRKMRLMVEDVAESLSRNEGRARRNNSAIAAMKFAAQRFDHLGRRME
                     VMQRFSDQYWDAYLNLGDRAKTRKLRYYTGAIYNNLREMAEELSILKEGYRAQWLAEN
                     RPYWLDSVLARYDQMISIWLMKSRAIDEALRKYETTSTLPSPEEFGLGTRPVAR"
     gene            952..2088
                     /locus_tag="VHD88_05580"
     CDS             952..2088
                     /locus_tag="VHD88_05580"
                     /inference="COORDINATES: protein motif:HMM:NF019403.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heparan-alpha-glucosaminide N-acetyltransferase
                     domain-containing protein"
                     /protein_id="HVS21298.1"
                     /translation="MRGDKGRAPTNRLISLDVFRGLTVVGMVLVNNPGSWAHIYWPLE
                     HAEWNGWTPTDLIFPFFLFIVGVAIPLAFGKRIERGDSRRARFIKVLYRSAIIFLLGE
                     FLAGFPYFHLATIRIPGVLQRIAVCYFCASIIYLTTRPRTTVIIALALLVVYWLLMKH
                     VPAPGYYVGDLSKEGSLASYIDRRIFGPHIWKQGIVYDPEGLLSTMGALATTLFGVLT
                     GNGLRSKTKTPIEKVAHMFIAGVCCVIVGWICNAWFPINKSLWTSSYVFFTGGLALQF
                     LALCYWLIDIKGYQRWTKPFVIFGVNAIALFVGTGVMARLMGLIKIPRSDGTRPSVQG
                     YIYNNAYASWLSPNKASLAFAISFILLWLFFMWLLYRKNVIIKI"
BASE COUNT          443 a          555 c          613 g          529 t
ORIGIN      
        1 tttcgattgg gcgttctttc gcaacgatgg cgatcagttt gtaaaggctg aacgttcgtt
       61 gggcagcgca ggaactctgc tgagcgccgg caccaccgac gagcttttct ggcgcgatcc
      121 gttcacgacc cagtttcaga atcaggcccg caactttgct gatcgaactc ggaagatgcg
      181 tctgatggtg gaagacgttg ctgaatcgtt gtcgcgaaac gaaggccgcg cgcggcgcaa
      241 caactccgcg atcgcggcga tgaagtttgc ggcgcagcga ttcgatcatc tcgggcgacg
      301 catggaggtt atgcaaagat tcagcgatca gtactgggac gcgtatctga acctcggtga
      361 tcgcgcgaaa accagaaagc tgcgttatta cactggcgcg atctacaaca acctgcgcga
      421 gatggcggaa gagctttcga tcctcaagga aggttatcgc gcgcagtggc tggcagagaa
      481 tcggccgtac tggctggaca gtgttttggc ccgctacgat cagatgattt cgatctggct
      541 catgaagagc cgcgcgatag atgaagcgct gcgaaagtac gaaacgactt cgacgctgcc
      601 gagtcccgag gagtttggat tggggacgcg accagtggcg cgatagccac gaaggttttg
      661 agtgccgtta ggcatgagat gtttatagtt ctgaccgctg ccttgtctta taaacccatt
      721 tatgggcgac agaaaacatg tcgctcctaa cggagctcag gattattacg tggaccttag
      781 ctataaacat ttcgctccta acggagcgag aaatacggaa gtaaagagca actccgtcac
      841 gaagatcgct gggccttact cggtctggcg aacacgacca tgagcgaatc atctgtagtt
      901 ccaaaatcca aggcagctgt aagtccgagg tcccaggttc tcctggactg gttgcgcgga
      961 gacaagggtc gagcaccaac caaccgcctt atctctctcg atgtctttcg cggcctgacg
     1021 gtcgttggca tggtgctggt gaacaatccc ggttcgtggg cgcacatcta ctggcctctg
     1081 gaacacgccg aatggaatgg ctggacgccg actgatctga tctttccgtt ctttctgttc
     1141 atcgttggcg tggcgatccc tctggctttc gggaagcgca tcgaacgcgg cgacagccgt
     1201 cgcgcgcgtt tcatcaaagt cctttaccgt tcagcgatca tttttctgct cggagagttt
     1261 ctcgccggct tcccatattt tcatctcgcg acgattcgca ttcccggtgt gctgcaacgc
     1321 atcgccgttt gctacttctg cgcttcaatc atttacttaa cgactcggcc gcgcacgacc
     1381 gtgatcatag cgcttgcttt gctcgtcgtg tattggttgt tgatgaagca cgtgccggcg
     1441 cccggctact acgtcggcga tttgagcaag gaaggcagtc tggcttcgta catcgatcga
     1501 cgcatctttg gcccgcacat ttggaagcag ggaattgtct acgatcccga aggactgttg
     1561 agcaccatgg gcgcgctggc gacgactctg ttcggcgtgt tgaccggtaa tggactacgc
     1621 tcaaagacga agacgcccat cgaaaaggtg gcgcacatgt tcatcgccgg cgtgtgctgc
     1681 gtgatagtcg gttggatctg taacgcctgg tttcccatca acaaatcgct gtggaccagt
     1741 tcgtatgttt tctttaccgg cggactggcg ctgcagtttc tcgctttgtg ttactggttg
     1801 attgatatca aaggctacca gcgttggacg aagccgttcg ttatctttgg cgtgaacgcg
     1861 attgctttgt tcgtgggaac aggagtcatg gcgcggctga tgggcctgat caaaattccg
     1921 cgctcggatg gtactcgtcc gtcggtgcag ggctatatct acaacaatgc atacgcgtcc
     1981 tggctttcac cgaataaagc ttcgctggcc tttgcgattt ccttcattct gctctggcta
     2041 tttttcatgt ggttgcttta ccggaagaac gtgatcatca agatttgagg acatgggtgt
     2101 cagaagcccg cgcgtcagca agggcaactc tcgccgggta
//
LOCUS       DASZZE010000287         1937 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_56169, whole genome shotgun sequence.
ACCESSION   DASZZE010000287 DASZZE010000000
VERSION     DASZZE010000287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1937)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1937)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1937
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56169"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..719)
                     /locus_tag="VHD88_05585"
     CDS             complement(<1..719)
                     /locus_tag="VHD88_05585"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HVS21299.1"
                     /translation="MSTAIDEPVQLTRITDEQELLEMERKYCSWGDTVHYLDPPKFFD
                     RAEGNYLYDREGTPYLDLQMWYSAASFGYGNQRLNKVLKDQIDKLPQLACQYLHPERV
                     ELAAAIGRLNESKFGLQGRVHFNVGGAQAIEDSLKLVRNSTGKNHVFAFMGGYHGRTL
                     GASAITSSYRYRRRFGHFSDRAHFVPFPYCFRCPYGKQKETCELYCVKQFEKNFETEY
                     NSFWDAKAGESEFSAFYVEAI"
     gene            complement(781..1506)
                     /locus_tag="VHD88_05590"
     CDS             complement(781..1506)
                     /locus_tag="VHD88_05590"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MtnX-like HAD-IB family phosphatase"
                     /protein_id="HVS21300.1"
                     /translation="MTKRQTPILFLDFDGTISKRDVIDAILEQYADERWLLIEEEWRA
                     GRIGSRACLNEQIALVRATQDELDALLDSIELDEGSSVLLQTSAAHHVPTHIISDGFD
                     YCIRRSLARRVTDFSRRGRRMRICASQLEVKGDREWRVDFPFFHQACAHGCATCKPAV
                     MSLLNSANAPTIFVGDGLSDRYAAASADLVFAKKSLAAYCREQRIAHVAYDDLEDVAA
                     YLETALQRGTDFSARELMERVGA"
     gene            complement(1499..>1937)
                     /locus_tag="VHD88_05595"
     CDS             complement(1499..>1937)
                     /locus_tag="VHD88_05595"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HVS21301.1"
                     /translation="HPIFLYRNALETRRQLERTQDVIAEVTGVRPQMARPPCGVRTPA
                     YFRAARELGLRTVQWTIAGFDWKKREAERIAHDVVRNATAGSIILLHDGDSAGKRDRS
                     ATVAAIPIIIAGLQSRGLRVAPLTQLLQVEKSQIHLSPETTYD"
BASE COUNT          386 a          573 c          520 g          458 t
ORIGIN      
        1 tggatcgctt cgacgtagaa ggctgaaaac tcagactctc cggctttcgc gtcccagaaa
       61 gagttgtatt cagtctcaaa gtttttttcg aactgcttga cgcagtagag ttcgcaagtc
      121 tctttctgct taccgtaggg acagcgaaag cagtagggga acggaacaaa gtgagcgcgg
      181 tcggagaagt gtccgaagcg gcgtcggtag cggtagctcg acgtgatggc tgacgcgccg
      241 agcgttcgtc cgtgatagcc gcccatgaag gcgaagacgt gatttttgcc cgtcgagttg
      301 cggacgagtt tgagcgagtc ttcaatcgcc tgcgcgccgc caacgttgaa atgcacgcgc
      361 ccttgtaagc cgaacttcga ttcgttgagc cgccctattg ccgccgccag ttcgaccctt
      421 tcaggatgaa gatattgaca tgcaagctgt ggcaacttat ctatctggtc tttcagcacc
      481 ttgttcaaac gctgattgcc gtaaccgaaa ctcgccgccg agtaccacat ctgcaagtct
      541 agataaggcg tgccctcgcg gtcatagagg taattcccct ccgcgcgatc aaaaaacttc
      601 ggcggatcga ggtaatgcac cgtatcgccc cacgagcaat acttgcgctc catctcaagc
      661 agttcctgct catcggttat tcgtgtcagt tggactggtt cgtcgatggc tgtactcata
      721 attatctctg ctgcgacttc tcacgccgcg ctcctttggt ctgaatcctt tgctctctgt
      781 tcaagcgccg acgcgctcca ttagttcccg cgcgctgaaa tcagttccgc gctgcaacgc
      841 cgtttcaagg tatgccgcta catcttctag atcgtcgtaa gcgacgtgcg cgatccgctg
      901 ctcgcggcag tacgccgcca gactcttctt ggcgaagacc aggtcggcgc tcgccgccgc
      961 gtacctatcc gacagcccgt caccgacaaa gatggtcggt gcgttcgcac tgttcagcag
     1021 gctcatcacg gcaggtttgc aggtcgcgca gccgtgcgcg caggcttgat gaaagaaggg
     1081 aaaatcaacc cgccattcac gatccccctt cacctcaagc tggctcgcgc aaatccgcat
     1141 cctgcgcccc cgtcggctga aatcagtcac cctgcgggcg agactgcgcc ggatgcagta
     1201 atcgaagccg tcgctgatga tgtgcgtcgg aacgtggtgc gccgcagatg tttgcagcag
     1261 tacacttgat ccttcgtcca actctataga atcgagcaac gcatcaagtt catcttgtgt
     1321 cgcgcgcacg agcgctattt gttcgttaag gcaggcacgt gaaccaattc ttcccgcgcg
     1381 ccattcctct tcgattaaca gccatctctc gtcggcatat tgctcaagga tggcgtcaat
     1441 cacatctcgt ttcgagatgg tgccatcgaa gtctaaaaac agaatcggtg tttgccgttt
     1501 agtcataagt cgtttcaggg ctcagatgaa tctgtgactt ctctacttga agtagctgtg
     1561 tgaggggcgc gactctcaag ccgcgcgatt gcagtccggc gataatgata ggaatggcag
     1621 cgacggttgc gctgcggtct cttttccccg cgctgtcccc gtcgtgcagc aggatgatcg
     1681 aacccgccgt tgcgttccgc accacgtcgt gcgcgattct ttcggcctcg cgctttttcc
     1741 aatcaaagcc tgctatcgtc cattgcaccg tgcgtaaacc cagctcgcgc gcggctctga
     1801 aataagccgg cgttcgcact ccgcaaggcg gacgcgccat ttgcgggcgc acgcccgtca
     1861 cctctgcgat cacatcttgc gttcgttcta gctgccgccg tgtttcgagc gcgttgcgat
     1921 agaggaaaat cggatgc
//
LOCUS       DASZZE010000288         6235 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_107361, whole genome shotgun sequence.
ACCESSION   DASZZE010000288 DASZZE010000000
VERSION     DASZZE010000288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6235)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6235)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6235
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107361"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            156..1208
                     /locus_tag="VHD88_05600"
     CDS             156..1208
                     /locus_tag="VHD88_05600"
                     /inference="COORDINATES: protein motif:HMM:NF020387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RES domain-containing protein"
                     /protein_id="HVS21302.1"
                     /translation="MTTPFDQLSRVLIVGQRTPLKQRLQEEANATAFIDDHNTWVESL
                     SDDNPMKEKLRATRTINLQARGEGEHPLSDISADAIRQQIGDLEVLKSPTADSSVISE
                     KVAALLDGYTLLTKCLRLKVIFRARRNSSRSEFTNITELWYPKPEYVTTIGRANKISS
                     PMFYCAQDFDIALTELHPKVGETITVLESEVIDPEHFPRTAQVGVTELTSKHIRAFAY
                     TLDEHMTLSGHLIRPGYSEKNALLHGYSLREFTQVVKDGAEYLYNITAQISEAILREH
                     GVEGLCYPSIAAEYRGVNLALEPKTVDDTYRPVGCLELHIEQLAPLRYKLLRRARSIE
                     RSGEIIWDGAVARSLA"
     gene            complement(1437..1943)
                     /locus_tag="VHD88_05605"
     CDS             complement(1437..1943)
                     /locus_tag="VHD88_05605"
                     /inference="COORDINATES: protein motif:HMM:NF012383.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HVS21303.1"
                     /translation="MFTAARACGFYEGALRASVLALKREPHVAPRLARLMSVTQRRTP
                     IDRANLIIPVPLHPDRERERGFNQAALLARELARLNNLPVDEHSVVRRIHTERHRAGM
                     DARARRESVADAFAVRHAGVIAGQRVLLIDDVFTTGATVSACAAALKDAGAEEVFVLT
                     VARPQQWQ"
     gene            2091..2294
                     /locus_tag="VHD88_05610"
     CDS             2091..2294
                     /locus_tag="VHD88_05610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21304.1"
                     /translation="MARFNAAAANRAGLWIDERQRGIVKSAQMMNPGRQVDLKRKGRK
                     DNRKGTQREILCALCGKLGVPLR"
     gene            complement(2432..2800)
                     /locus_tag="VHD88_05615"
     CDS             complement(2432..2800)
                     /locus_tag="VHD88_05615"
                     /inference="COORDINATES: protein motif:HMM:NF013427.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TraR/DksA C4-type zinc finger protein"
                     /protein_id="HVS21305.1"
                     /translation="MDKRKAKTYRDKLLVRREGLVGQVQAAEAYSRERDAEATQDPAD
                     MAANAYTKELMMSMSTNDRQLLESIDAALVRIEDGKYGKCIHCGQPIQEKRLEAVPWA
                     RHCLRCADLNERGLLHHEEE"
     gene            complement(2839..3297)
                     /locus_tag="VHD88_05620"
     CDS             complement(2839..3297)
                     /locus_tag="VHD88_05620"
                     /inference="COORDINATES: protein motif:HMM:NF014629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HVS21306.1"
                     /translation="MRFRFIWPGKTKDEHLRALVSEYLKRLSRFARCEVVETREGAAS
                     DPAAIEKESHRILDAIPAGSLTVLLDVKGREWSSQELAAQVQRWENDSIKEVAIVIGG
                     PQGVSAEVVARAQEKWRLSRLTLTHEMARVVVLEQFYRAYTINRGLPYQK"
     gene            complement(3364..4296)
                     /locus_tag="VHD88_05625"
     CDS             complement(3364..4296)
                     /locus_tag="VHD88_05625"
                     /inference="COORDINATES: protein motif:HMM:NF012385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HVS21307.1"
                     /translation="MIEIVALSDAMREAVSLAERVAPTDANALVTGESGAGKDALSAF
                     IHSRSRRSAHPLVKIDCATLPADLLEAELFGYERGAFTGATEAKPGRLEAAHGGTLVL
                     DEIAHLSSDAQAKLLRVIETREFERLGGRKTIEVDARLIALTIADLKNAVERRAFRDD
                     LFYRLNVVHIEVPPLRERGKDLETLSRGFVRTYAAKHGRPAKKLSAEALTLLRAYDFP
                     GNVRELANIIERAVIVSNDSQIAASDLPEGLRAAAAQRARKDRRPTLAEVESQYIRET
                     LASTKGNKAEAARILGISRKNLYERLARESKDER"
     gene            complement(4362..4820)
                     /gene="rsfS"
                     /locus_tag="VHD88_05630"
     CDS             complement(4362..4820)
                     /gene="rsfS"
                     /locus_tag="VHD88_05630"
                     /inference="COORDINATES: protein motif:HMM:TIGR00090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0017148 - negative regulation of
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HVS21308.1"
                     /translation="MSQELKEKSLRSEVPAASVGAPSGAAAADLSALDERILLALHAA
                     AEKKALDLTVLDLRGIASFTDFFIITTGANKRQMQAISDEVVEQLKRHGTRAARVEGY
                     QTAEWILVDYGDFIVHVFDEKARRFYDLERLWREAVRVDVSPDRLAEARP"
     gene            complement(4822..5493)
                     /gene="nadD"
                     /locus_tag="VHD88_05635"
     CDS             complement(4822..5493)
                     /gene="nadD"
                     /locus_tag="VHD88_05635"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: protein motif:HMM:NF000840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
                     /protein_id="HVS21309.1"
                     /translation="MALRRVAIYGGTFDPVHNGHIEAARNVAKLFALDKVIFIPACVP
                     PHKRNAGVTSALHRFAMLALATQDDEELRVSTAELDAPEMPYTVETIARLQGELGSNS
                     RLFFMVGADSWSEITTWRNWQRLLTMCDQIVVTRPGYELSTETLFTEQARVADVRGLS
                     EKEISALMNDGGKPRAFFTDAAMVDVSATAIREAARSLDSEKLKEMVPLAVASYIKKY
                     ELYKE"
     gene            complement(5497..>6235)
                     /gene="obgE"
                     /locus_tag="VHD88_05640"
     CDS             complement(5497..>6235)
                     /gene="obgE"
                     /locus_tag="VHD88_05640"
                     /inference="COORDINATES: protein motif:HMM:NF008956.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HVS21310.1"
                     /translation="LLFDCDEDGQRWLAARGGRGGFGNAHFTTSTNRAPRYHQEGSPG
                     EYFELQLELKLLADVGLVGFPNAGKSTFISKVSAARPKIADYPFTTLEPHLGVVDLGD
                     FRTFVVADIPGLIEGAHQGHGLGDRFLRHIERTKLLLHLVDVSSSSGRDPVTDYDVIN
                     HELAAYDERLAARPQFVVATKIDALDEPERLESLRARAQRDERSFFAISSATGAGVRD
                     LIMAVGRELDQIRMSPKRETGEPLLVV"
BASE COUNT         1390 a         1872 c         1619 g         1354 t
ORIGIN      
        1 cgtagagggt tcttagttct gccatgccca tatcataacg gcacttggca ccgtattagc
       61 aaacatcgac atgccggcgg tccatggggt aatcaagcgt tcgtgattcg gagttgattt
      121 cacgttaata tcgtggttgt gaaatgaggt gaatattgac aactccattt gaccagttaa
      181 gcagagtatt aatcgttggt cagcgcacgc cattgaaaca acggctccaa gaggaagcaa
      241 acgccactgc tttcatagac gatcacaaca cgtgggttga gtcactttcc gatgacaatc
      301 cgatgaaaga aaagcttaga gcgacgcgca cgattaacct gcaagctaga ggtgaggggg
      361 agcatccctt atctgacatc tcagctgatg cgattaggca acagatagga gatttggaag
      421 tcttgaaatc accaacggct gattcgtcgg ttatttcaga aaaagtcgcg gcattgctgg
      481 acggatatac gcttctaaca aagtgcctgc gactcaaagt catttttcgc gccaggcgca
      541 atagcagtcg ctctgagttc acaaacatca ccgaattatg gtatcccaag cccgaatacg
      601 tcacgacaat aggtcgagcg aacaaaatca gctcaccaat gttttattgt gcccaagatt
      661 tcgatatagc cttaacagaa ttgcacccta aagtgggaga gacaataacc gtattagagt
      721 ccgaagttat tgaccctgag cattttcccc gcaccgcgca agttggcgta accgaactta
      781 catcgaaaca catccgagcc tttgcttaca ctcttgacga gcatatgact ctgagtggcc
      841 acttgataag accgggctat tcagagaaga acgcgttgct ccacggctac tcgctgcggg
      901 agttcaccca agtagtgaag gacggagcgg aataccttta caatattact gcgcaaatat
      961 cagaggccat attgcgagag cacggggtgg aagggttatg ttatccgagc atcgcggctg
     1021 aatatcgagg ggtaaatctc gctctagagc caaaaacggt tgacgatact tatcgcccag
     1081 tagggtgctt ggagctgcat atagagcagt tagcccccct acgctataaa ctgctgcgcc
     1141 gagccagaag tattgagcgc agcggtgaaa ttatatggga tggcgccgta gcgcggtctt
     1201 tagcataagc cgcgtggcgc ttagttccat tcgctgaatg cgccgaatgg gtcccgtcgc
     1261 cgcgtcattt gtgacgacgg ggttatgccg ccccaacagg cttgggtgtt ccctgattgg
     1321 ttgattcagg ggcggcgcga cttcgtcgct tacccctggc tattagatct cacgccttcg
     1381 ctgacccggt cgctaccgct cccggttctg tacccaagcc ctccctgacg gtcgggctac
     1441 tgccattgtt gtggacgcgc aacagttagt acaaaaactt cttccgcgcc agcatccttc
     1501 aacgctgccg cgcacgccga aaccgttgcg ccggtcgtaa acacgtcgtc aatcagcaga
     1561 acgcgttggc cggcgatcac accagcgtga cgaacagcga acgcatctgc gacgctctcg
     1621 cgccgggcgc gcgcgtccat gccggcgcga tgacgctcgg tgtgaatgcg gcgcacgacg
     1681 ctgtgctcgt cgaccggcag gttgttaagc cgagcgagtt cgcgggcaag caaagcagct
     1741 tgattgaacc cgcgctcgcg ttcgcggtcg ggatgaagcg gaacggggat gatcaagtta
     1801 gctctatcaa tcggtgtgcg ccgttgggtc acggacatca agcgcgccag tcgaggcgcc
     1861 acgtgaggtt cgcgtttcag ggccagcact gaagcgcgca aggctccttc gtagaatccg
     1921 caagcacgcg ccgcggtaaa catgtcttca tcgcactgcc cacaacgaat gttctttcgc
     1981 ctgtcttccg taacttttgc gcggctgaag gcaccgcatt tccagcatag agtgtcgtcg
     2041 ccagtaaaca gcctagtcgc tttccaacat tttgcgcacg caaccccgtc atggcgcgat
     2101 tcaacgctgc cgccgcaaac cgcgcaggct tgtggataga cgagcgccag cgcggcatcg
     2161 taaagagtgc tcagatgatg aaccctggaa gacaagtaga tttgaaacgc aaaggtcgca
     2221 aagacaatcg caaaggaacg caaagagaaa tcctttgcgc gctttgcgga aaacttggcg
     2281 tccctttgcg ttagaacaat aaattcatat tactcaacac atccaggctg ggattcaaaa
     2341 cagttcggcc tcccaattga catcaggagg ccgcaattat gccacatctg cgatctcaaa
     2401 tctcagatca cagattttga gatgtcaaag ttcattcttc ctcatgatgc agcaatccgc
     2461 gctcgttcag atccgcgcaa cgcaaacaat gtcgcgccca cggaacggcc tcgagccgct
     2521 tctcctgaat cggctggccg cagtgaatgc acttcccata cttgccgtcc tcgattcgca
     2581 ccaacgcagc gtcgatcgat tccaaaagct gccggtcatt tgtcgacatc gacatcatca
     2641 actctttcgt gtacgcgttc gcggccatgt ccgccgggtc ctgcgtcgct tccgcatcgc
     2701 gctcgcgact gtaagcttca gcggcctgaa cctgaccgac caaaccttca cgccggacca
     2761 atagcttgtc tcgataagtt ttagccttcc tcttgtccat tctctgcatt ctttctgact
     2821 cctgtcttct gtcctttttc atttctgata cggcaggccg cgattgatcg tgtaagcgcg
     2881 ataaaactgc tcaagaacaa cgacgcgcgc catttcatgc gttagcgtca ggcgcgacag
     2941 ccgccatttc tcttgcgctc gcgcgacaac ttctgcgctg actccctgcg gaccgccaat
     3001 cacgattgcc acttccttaa tcgaatcgtt ctcccagcgt tgcacctgcg cagccaactc
     3061 ctgagaactc cattcgcgcc ctttcacatc aagcagaact gtcaaactgc ccgcgggaat
     3121 cgcatccaga attcggtgcg attctttttc gatcgccgcc gggtcgctgg ccgcgccctc
     3181 tcgtgtttca acaacttcgc accgcgcaaa tcgcgagagc ctcttcagat actcactaac
     3241 gagcgcgcgc aaatgctcgt ctttcgtctt gcccggccag atgaagcgaa accgcatcac
     3301 aggcaactat gaagttggaa cgatgaacga tgaactgaaa agcagttgtt catcattccg
     3361 cgttcatcgt tcatctttgc tctcccgcgc cagccgctcg taaagattct tgcggctgat
     3421 gccgagtatc cgcgccgcct ctgccttgtt tcctttcgtg gaagcaagag tctcgcgaat
     3481 gtattggctt tcgacttctg cgagtgtcgg ccgtcgatct tttcgcgctc gctgcgccgc
     3541 ggctgcacgc aagccctcgg gcaagtcact cgccgcgatt tgcgagtcgt tggaaacgat
     3601 taccgcgcgc tcaatgatgt ttgccagctc gcggacgttg ccgggaaaat cgtacgcccg
     3661 caacaaagtg agcgcttcag cggacaattt cttcgcaggc cgtccgtgct tggccgcata
     3721 ggttcgaaca aagccccgac taagcgtctc aagatctttg ccgcgctcac gaagcggcgg
     3781 cacctctatg tggacaacgt tgagccggta aaacagatca tcgcgaaaag cgcgccgctc
     3841 gaccgcattc ttgagatctg caatcgtcaa ggcgatcagc cgcgcgtcaa cttcaatcgt
     3901 cttgcgccca cccagccgtt caaactcgcg agtctcaatc acgcgcagca gtttcgcctg
     3961 cgcgtccgag gaaagatgcg caatttcgtc cagcaccaaa gtgccgccgt gtgcggcttc
     4021 caatcgaccc ggcttcgcct cagtcgcgcc ggtgaaagcg ccacgctcgt aaccaaaaag
     4081 ctcggcctcg agcagatcgg caggcagcgt cgcgcagtca atcttcacca gcgggtgtgc
     4141 cgagcggcgc gagcgtgaat gaatgaacgc ggagagcgcg tctttgcccg cgccggactc
     4201 tccggtgacc agcgcgttcg catcggttgg ggccactcgc tccgccaggc tgaccgcctc
     4261 gcgcatcgca tccgacaagg ccactatttc gatcactgct cctctttcaa acctgcggga
     4321 gaagcgcgaa cctgaaaaat gatccgcgat tgcgccctcc ctcacggtcg ggcttctgcc
     4381 aaccgatccg gcgaaacatc gacccgcacg gcttcacgcc acaaccgctc gaggtcgtaa
     4441 aagcgccgtg ccttttcatc gaaaacgtga acgataaaat cgccgtaatc gaccagaatc
     4501 cattccgcag tttgatagcc ttcgacgcgc gcggcccgcg tgccgtgccg tttcaattgt
     4561 tccacaactt cgtcactgat cgcttgcatc tgtctcttgt ttgcgccggt agtgatgatg
     4621 aaaaagtccg tgaagctggc gatgcctcgc aaatcgagca cggtcagatc gagggccttc
     4681 ttttcagccg cggcgtgcaa cgcgagcaga atccgctcat caagtgcaga cagatcggcg
     4741 gccgcggcgc cgctgggagc accaactgag gctgccggca cttctgaccg taacgatttc
     4801 tctttcagct cctggctcat gttattcctt gtacagctcg tatttcttga tatagcttgc
     4861 cactgccagc ggtaccatct ccttcaactt ttcgctatca agcgagcgtg cggcctcgcg
     4921 aatggcagtc gccgaaacgt ccaccatcgc tgcatcggtg aaaaacgcgc gcggcttgcc
     4981 gccgtcgttc atcaacgctg agatttcctt ttcgctcagc ccgcgcacgt cggcaacgcg
     5041 tgcttgctcg gtaaaaagag tctcagtgct cagttcgtat ccgggccgcg tcacgacgat
     5101 ctgatcgcac atcgtgagca atcgctgcca gttgcgccac gtcgtaatct ctgaccatga
     5161 atcggcgccc accatgaaaa acagccggct attcgatccg agttcgccct gaaggcgcgc
     5221 gatcgtctca accgtataag gcatttcggg cgcgtcaagt tcagcagtcg atactcgcaa
     5281 ctcttcatcg tcctgcgtag ccaatgcgag catcgcaaaa cggtgcaacg cagaagtgac
     5341 gcccgcattt cgtttgtgcg gcggcacgca tgccggaatg aagatcactt tgtcgagcgc
     5401 gaacagcttc gcgacgttac gagctgcttc gatgtgccca ttgtgaacgg gatcgaatgt
     5461 gccaccgtaa atcgcaacgc gccgcaatgc catgactcaa acaaccaaaa gcggttcgcc
     5521 agtctcccgc ttcggactca ttctgatctg gtcgagttcg cgcccaactg ccatgatcaa
     5581 atcacgcacg cctgcgcccg ttgcagacga aatcgcaaag aacgaccttt catcccgttg
     5641 cgcgcgcgcc cgcaaactct caagtcgctc tggctcatcg agcgcgtcga tcttagtcgc
     5701 tacgacaaac tgcggccgcg cagcgagccg ctcgtcgtac gcggccagct cgtgattgat
     5761 cacgtcgtaa tcggtaactg gatcgcgacc agacgaagac gacacatcca cgagatgaag
     5821 cagcaatttc gttcgctcaa tatggcgcag gaaacggtcg cccagcccgt ggccctggtg
     5881 cgcgccttcg atcaatccgg ggatgtcggc aacgacgaac gtgcgaaagt ctcccaggtc
     5941 cacgactccc agatgcggct caagcgtagt gaacggatag tcggcaatct ttggccgcgc
     6001 cgctgagact ttcgagatga aagtcgattt gccggcattg ggaaaaccta ccaggcccac
     6061 atcggccagc agtttaagct caagctgtag ttcaaagtat tcgcccgggc ttccctcttg
     6121 atggtaacgc ggtgcgcgat tggtcgaggt cgtaaagtgc gcattgccaa accctccgcg
     6181 accgccacgc gcagccagcc agcgctgtcc gtcttcatcg caatcgaaca acaga
//
LOCUS       DASZZE010000289         1789 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_75359, whole genome shotgun sequence.
ACCESSION   DASZZE010000289 DASZZE010000000
VERSION     DASZZE010000289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1789)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1789)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1789
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75359"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..856)
                     /locus_tag="VHD88_05645"
     CDS             complement(<1..856)
                     /locus_tag="VHD88_05645"
                     /inference="COORDINATES: protein motif:HMM:NF013486.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro peptidase family protein"
                     /protein_id="HVS21311.1"
                     /translation="MCTDRRNFLRLSAGVAGATLLGSQLSFAHTDDVEAIQQRQDVPD
                     LIQRLRRMTAGVVPITDDERKARIAKAQRLMAEQKIDAIYIESGTSMYYFTGMRWGQS
                     ERMFAVVIPQRGEIAWVCPKFEEERAHELIKIGTDIRTWEEDESPYRRVAQIIRDRGI
                     RSGRIGIEERVRFFLYDGIRQEAPKLEFVSATPITAGCRMYKSPAELALMQRANDITI
                     VAYRATWATMREGMTQAEFAGNCATAFHNLGVQGGIFVSFGKYTAFPHGSSTPQILNE
                     GDMVLMDDG"
     gene            complement(1003..>1789)
                     /locus_tag="VHD88_05650"
     CDS             complement(1003..>1789)
                     /locus_tag="VHD88_05650"
                     /inference="COORDINATES: protein motif:HMM:NF014757.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding
                     domain-containing protein"
                     /protein_id="HVS21312.1"
                     /translation="SLIQKGFTAIEASLERFAAKGTITAEQQKATRDRLFGTTSFDDL
                     ADCDIIIEAIIENLEEKQNTYRQLDAICKPQTIFASNTSSLSITQMMVATSPERQQRF
                     IGMHFFNPVPIMKLVEVVRTILTDSAVYEQAVEFGKQLGKVPVRASDKTGFIVNRLLV
                     PYLLDAIRALEEGVGSIVDIDNAMKLGCGYPMGPFTLGDFVGLDTTYYIAEIMFNEFR
                     EKRFAPPPLLKRMVMAGLYGRKSGRGFYDYAKDPKNPTSMNLV"
BASE COUNT          379 a          505 c          495 g          410 t
ORIGIN      
        1 agccgtcgtc catcaaaacc atgtcgcctt cattcaaaat ctgaggcgtg ctgctgccgt
       61 gcggaaacgc tgtgtacttg ccaaagctaa cgaagattcc gccctgcacg ccgagattgt
      121 gaaatgccgt ggcgcagttg ccggcgaact cagcttgcgt cattccttcg cgcatcgtgg
      181 cccaggtcgc gcgataagca acgatcgtga tgtcgttggc gcgttgcatc aacgcaagct
      241 cagcgggcga tttgtacatg cgacagccgg cggtgattgg agtagcgctg acgaattcca
      301 acttaggcgc ttcctggcgg atgccatcgt aaagaaaaaa gcgcacgcgc tcttcaatgc
      361 cgatgcggcc cgatcgtatg ccgcgatcgc gaatgatttg cgcgacgcga cgataagggc
      421 tctcatcttc ttcccaagtg cgaatgtcgg ttccgatctt gatcagctcg tgcgcgcgtt
      481 cttcttcgaa cttcggacaa acccaggcaa tctcgccgcg ctgcgggatg acgaccgcga
      541 acatgcgctc gctctggccc caacgcatcc cggtgaagta gtacatgctg gtgcctgact
      601 cgatgtagat ggcgtcgatc ttttgctcgg ccatcaaacg ctgcgccttc gcgatgcgcg
      661 ctttgcgttc gtcgtcggtg atcggcacga cgcctgcggt catgcgacgc agacgctgaa
      721 tcagatcggg aacgtcctgt cgctgttgga tggcttcgac gtcgtcggtg tgggcgaaag
      781 aaagctggct gccgagcaga gtcgccccgg caactccggc ggaaagacgc aagaagtttc
      841 gtcggtcagt gcacatggtc ggcgattgta atcgaaagcg cgatgtacaa gccacagatg
      901 aactcagatg agcacggatt cagcaaacca atgatcactg cctgggactc tttcttagtt
      961 cttatctgtg tcaatccgtg ttcatccgtg gctgattaat tgctagacca gattcatcga
     1021 cgtcgggttc tttggatctt ttgcatagtc ataaaacccg cggcccgatt tgcgcccata
     1081 gagcccggcc atcaccatgc gcttcaaaag cggcggcggc gcgaaacgct tctcgcgaaa
     1141 ttcattgaac atgatctcgg cgatgtagta agtcgtatcg aggccgacga aatcgcccag
     1201 cgtaaacggg cccatcggat aaccacagcc gagcttcatc gcgttgtcaa tatccacaat
     1261 cgatcccacg ccttcttcca gcgcgcgaat cgcgtccagc aggtacggca ccagcaaacg
     1321 gttcacgatg aatccggttt tgtcgctggc gcgcacggga actttgccga gctgttttcc
     1381 gaactcgacg gcctgctcgt aaacggccga gtcagtcaga atcgtgcgca cgacttcgac
     1441 cagcttcatg atcggcacgg gattgaagaa gtgcatcccg ataaagcgct gctgtcgctc
     1501 aggcgaagtc gctaccatca tctgcgtgat cgaaagcgac gacgtgttcg acgcaaagat
     1561 cgtttgcggt ttgcagatcg cgtcaagctg acgataggtg ttctgcttct cttcaaggtt
     1621 ttcgatgatt gcttcgatga tgatgtcgca atccgccagg tcgtcgaacg aagttgttcc
     1681 aaacaaacga tcgcgcgttg ctttctgctg ctcggctgta atcgtgccct tcgccgcaaa
     1741 tctttccagc gatgcttcga ttgcggtgaa gcctttctga atcagagat
//
LOCUS       DASZZE010000290         6216 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_190607, whole genome shotgun sequence.
ACCESSION   DASZZE010000290 DASZZE010000000
VERSION     DASZZE010000290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6216)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6216)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6216
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_190607"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..873)
                     /locus_tag="VHD88_05655"
     CDS             complement(<1..873)
                     /locus_tag="VHD88_05655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21313.1"
                     /translation="MPNTNQIKVNSGDTLVLVGTMKGAFLFRSGAAREKWNVAGPYFP
                     GRAIYSLAYDGRNGRRRLWAAVNSLHFGSFLSQSNDFGKTWSDPESYNIKFPEGSDLS
                     LTQIWQIAEGHPSEPDTLYCGVEPAALFKSTDAGETWSLERGLFDHPHRPLWMPGGGG
                     LCLHTILPDPSNDQRMFVAISTGGVYRTDDGGKNWQPRNKGVRAQFLPPDQQYPEWGQ
                     CVHKIVSHPSNPQRMFLQNHWGLYRSDDGADSWQDIANGVPSDFGFALEVDPHDANTA
                     YIIPVESDEFRCTPE"
     gene            1018..1230
                     /locus_tag="VHD88_05660"
     CDS             1018..1230
                     /locus_tag="VHD88_05660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21314.1"
                     /translation="MKETFTAVLWKEGKWYVAQCREFEVASQGTSKKEALRNLSEAIE
                     VHFSPPVASVLPEVIPIEAEVESGVA"
     gene            1242..1439
                     /locus_tag="VHD88_05665"
     CDS             1242..1439
                     /locus_tag="VHD88_05665"
                     /inference="COORDINATES: protein motif:HMM:NF019540.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003729 - mRNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HVS21315.1"
                     /translation="MEPSKKLEAAGFEERPARGSHRKFVKFTREGVITAVVPQHREVA
                     VGTLRSILRQAMLTPQEFEEL"
     gene            1572..5024
                     /locus_tag="VHD88_05670"
     CDS             1572..5024
                     /locus_tag="VHD88_05670"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HVS21316.1"
                     /translation="MFKRFSPAELCRRIAVALFVPVIAAAVLLTNFTAHAQTSNSGTR
                     LLRTPTVSATQIAFAYAQNIWVVPRAGGMARRVTSFQGQTTNPHFSPDGKWIAFSGEY
                     AGNFDVYVVPADGGEPKRLTWHPGADLVQGWTSDGKSILFSSTRATWSPSGAPRFWTV
                     SAEGGVEEPMPLPRAYQGKISADGSRIAYRMNNSWDEERRNYRGGQNRPIWIVDLKSY
                     DLVSPPWIDSKDMDPVWSGEAVYFISDRDGVANVWAYDTRTKKLAQVTRFMDFDVKTM
                     DSGAGAIVFEQAGYIHELDPKSGKEHIVNITAAGDFPWMMPKWEDVTARMTNMSLSPT
                     GKRVVVEARGEIFTIPAEKGDIRNLTNSSGSAERDPAWSPDGKFISYFSDKSGEYRLY
                     IEAQDGLTPPREIVLEHPTHYYTSSWSPDSKKIVFTDTNLHVWVVDVATGKAKVVGND
                     PWMVPQRTLNPVWSPDSKWVAYSSRLRSMYHAIFVSNAETGETKQVTDGLADAVWPAW
                     DASGKYLWFLASTDFGLRSQWLDMTSYDHSENLGLYFSVLKKSDASPLLPESDEDRGV
                     GTGRRTLPPGACVGDAPAATGDAAVGEQQPQTPRGPRQPVSVTIDFEGLSQRIVSVPG
                     VPERDYSELHSGVDGIVYFLEASGRGQGGGAGAGNDLIRYRLCDRRATTFVSGVLAYD
                     VSADGRKLVYRAAGGGGGGRGPGAAAAGGPPTPSLFIVDADRTPPQPGQGRINVNLRM
                     YLDPKEEFKQIFSEGWRNERDYLYVPNLHGTDWVKDREMYGAMLPYVMHRADLNYLLD
                     MMGAEIAIGHSYVRGGDMPEVPAVQGGLLGADFAIENGRYKVTRIYDNENWNPDLRSP
                     LSSPGAIVNVGDYILAINGIELKAPDNIYRLLDGTANRQTSLTVNDKPTMEGARHVTV
                     VPVVNEQTLRTRAWVESNRRLVEKLSDGQLAYVYLPNTGQPGYTSFNRYYFAQQDKKG
                     AIVDERFNGGGSAADYIIDVLQRDFDGYFNNVAGDRYPFTSPAAGIWGPKVMIINEMA
                     GSGGDLMPYMFKHRKIGLLVGKRTWGGLVHTADTPVFVDGGSMIAPRGGFFARDGKWA
                     VENEGVAPDVDVENWPKDVIAGRDPQLERAVQEAMRMLKEHPVDRAGKEPPPPTWGVR
                     PKQR"
     gene            5145..5600
                     /locus_tag="VHD88_05675"
     CDS             5145..5600
                     /locus_tag="VHD88_05675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21317.1"
                     /translation="MTFNFQKRSLVLFAGLVMVLLVTQTVVSAPPLPNPVLYLLGQEP
                     YQAGGKQWIRYKYDVLNKAAYPADFFAAAPALPPCGTNTKSSRTWVDIFDQRGKRLYG
                     FCALGKPDNLSGIWFALEEGVVPPSYVYIEMTDRQTNTKYKSNLAETTP"
     gene            5630..6187
                     /locus_tag="VHD88_05680"
     CDS             5630..6187
                     /locus_tag="VHD88_05680"
                     /inference="COORDINATES: protein motif:HMM:NF019614.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1697 domain-containing protein"
                     /protein_id="HVS21318.1"
                     /translation="MIKYVAFLRGINVGGKRLIKMEDLRRVVESLGLKNVRTFIASGN
                     VLFETSQTNRDALTRKIEKKLLTAFGHDVPVVLQTIDELRDILRRGPFKNIKPSPDVM
                     MCVTLLTGEPKGSPKLPLQSAIENLEVLAIKNRAAFILWRRKKNGMFSFPNNFFEKEF
                     KVTATTRQWNTINRIVALAEAEAGP"
BASE COUNT         1380 a         1696 c         1812 g         1328 t
ORIGIN      
        1 ttccggcgtg cagcgaaact catccgactc gaccggaatg atgtaagcgg tgttcgcatc
       61 gtgcggatcg acctccagcg cgaaaccgaa atccgaaggc actccgttgg cgatgtcctg
      121 ccaactgtca gcgccgtcgt cgctgcgata aagtccccaa tggttctgca aaaacattcg
      181 ctgcggattc gaaggatggc tgacgatttt gtggacgcac tgtccccatt cgggatactg
      241 ctgatcgggt ggcaggaact gcgcgcgcac gcctttgttg cgcggctgcc agttcttgcc
      301 gccgtcatca gtgcgataga cgccgccggt tgagatggct acgaacatgc gctgatcgtt
      361 agaaggatcg ggaagaatcg tgtgcaggca aagtccgccg ccgcccggca tccacagcgg
      421 ccggtgcgga tgatcgaata gcccgcgttc gagcgaccac gtttcgcccg cgtccgtcga
      481 tttgaaaagc gcggccggct cgacgccgca atagagcgtg tctggctcgc tcgggtgacc
      541 ctcagcgatc tgccagattt gtgtgagcga aagatcgctg ccttcgggaa acttgatatt
      601 gtagctttcg ggatcgctcc aggtttttcc aaaatcattc gactgactaa gaaaggatcc
      661 aaagtgaaga ctgttgaccg ctgcccacaa acgccggcgc ccattgcggc cgtcataggc
      721 cagcgagtag atcgcgcggc cgggaaagta tggcccggct acattccatt tttcgcgcgc
      781 cgcgccggaa cgaaacaaga acgcgccctt catcgtgccg acgagcacga gtgtgtcgcc
      841 tgagttaact ttgatctgat ttgtatttgg cattggggaa ctccaaagaa gaattaccct
      901 gacctgcggg cgcgattata tagaaagatt aggttgcccc caaagcgtct gagttatact
      961 gttgaggaat gttcgtagga tacatcgctt ttttgatcgc tacccgagga acagaaaatg
     1021 aaagagacat tcacagcggt tctctggaaa gaaggcaagt ggtacgttgc gcagtgtcga
     1081 gagttcgaag tcgcgagtca aggcacaagc aagaaagaag ctcttcgtaa cctctcagaa
     1141 gcgatcgagg tccacttctc gccaccagtc gcctcagtct tgcctgaagt aattcccatc
     1201 gaagccgagg tcgagagcgg tgtcgcttaa gcctcttcct tatcgaacca tcaaagaaac
     1261 ttgaagccgc tgggtttgag gagcgacctg cgcgcggcag tcatcgaaag ttcgtgaagt
     1321 tcaccagaga aggggttatc actgcggtcg tgcctcagca tcgcgaagtc gctgttggga
     1381 cgctgcgcag cattttgcgt caggcgatgc ttactcctca ggaatttgaa gaattatgag
     1441 ggttgtaaac ttttaattcc cgttgatgaa aaacggcccg cgtttgcggc ccgcaaaatc
     1501 cttggctctg ccgcgtgctt catgctaaaa gaagcacgca aacctatccg gttcgatctg
     1561 gaggaaaatt gatgttcaag cgatttagtc cggcggagct gtgccgccgc attgccgtgg
     1621 ccttgttcgt tcccgttatc gctgctgctg ttcttcttac caacttcaca gcgcacgcgc
     1681 aaacatcgaa tagtggcacg cgcctgctgc gcacgccgac ggtgagcgcg acgcagatcg
     1741 cttttgctta cgcgcagaat atttgggtcg taccgcgcgc gggcgggatg gcgcgtcgcg
     1801 tcacgagttt tcagggccag acgacgaacc cgcatttttc gccggacgga aaatggatcg
     1861 cgttcagcgg cgagtacgcc ggcaactttg acgtttacgt cgtgcctgct gatggtggcg
     1921 aaccaaagcg tctgacgtgg catccgggcg cggacttagt tcagggttgg acctccgacg
     1981 gcaaatcgat tctgttttca tcgacgcgcg caacctggtc gccgagcgga gcgccgcgtt
     2041 tctggaccgt ttcagccgaa ggtggcgtcg aagaaccgat gccgttgccg cgcgcatatc
     2101 agggaaaaat ctcagccgat ggatcgcgca tcgcttaccg catgaacaat tcctgggacg
     2161 aagaacgccg caactatcgc ggcggccaga accgtccaat ttggatcgtc gatctgaaga
     2221 gctacgatct cgtttcaccg ccgtggattg attcaaaaga catggatccg gtttggtcgg
     2281 gcgaggcggt ctatttcatt tctgatcgcg acggcgttgc gaacgtctgg gcgtacgaca
     2341 caagaacgaa gaagctggcg caggtcacga ggttcatgga ttttgatgtg aagacgatgg
     2401 attccggcgc gggcgcgatc gttttcgagc aagccggcta cattcacgaa cttgatccga
     2461 agagcggcaa ggaacacatc gtcaacatca ccgctgcggg cgactttccg tggatgatgc
     2521 cgaagtggga agacgtcacc gctcgaatga cgaacatgtc gctttcgccg acgggcaaac
     2581 gcgtggtcgt cgaagcgcgc ggcgaaatct tcacgattcc tgcggagaaa ggcgacatac
     2641 gcaacctcac caattccagc ggttcagcag aacgcgatcc ggcgtggtcg cctgacggaa
     2701 aattcatttc gtatttcagc gacaagtcgg gcgagtatcg tctctacatc gaagcgcagg
     2761 acggactgac gccgccgcgc gagatcgtgc tcgaacatcc cactcattac tacacgtcgt
     2821 cgtggtcgcc tgactcaaag aagatcgttt tcacggatac gaatctgcac gtgtgggtag
     2881 tcgatgtcgc gaccggcaaa gcgaaggtcg tcggcaacga tccgtggatg gtgccacagc
     2941 gcacgctcaa tcccgtctgg agtccggatt cgaagtgggt tgcatactca agccggctgc
     3001 gttcgatgta tcacgcaatc ttcgtgagca acgctgagac gggtgagaca aaacaggtga
     3061 ctgatggtct cgccgacgct gtgtggccgg catgggatgc gagcggcaag tatctgtggt
     3121 ttcttgcttc gacagatttt ggcttgcgct cacaatggct cgacatgacc tcttacgatc
     3181 atagcgagaa cctcggcttg tacttctcgg tgctgaaaaa gagcgacgcg agtccgctgc
     3241 ttccagagag cgatgaagac agaggcgtag gcacgggccg ccgcacacta ccgccaggcg
     3301 cttgcgttgg cgacgctccg gcagcgaccg gtgatgccgc tgttggtgaa caacaaccgc
     3361 agactccgcg cggtccgcgt cagcctgtaa gcgtaacaat cgatttcgaa ggattgtcgc
     3421 agcgcatcgt ttcagtgccg ggcgtgcccg aacgtgatta ttccgagctg cactcaggcg
     3481 ttgatggaat cgtttacttt ctcgaagcga gcggacgcgg tcagggtggt ggcgcgggcg
     3541 caggaaatga tttgatccga tatcgcttgt gcgatcgcag agctacgaca ttcgtcagcg
     3601 gcgtcctcgc ttacgatgtg agcgccgacg gccgcaagtt ggtctatcgc gcagccggcg
     3661 gtggtggcgg tggacgcggt cccggtgcgg cagccgcagg cggcccgccc actccttcgc
     3721 ttttcatcgt tgatgctgat cgaacgccgc cacagcccgg ccagggtcgc atcaatgtca
     3781 acctgcgcat gtatctcgat ccgaaagaag aattcaaaca gatcttcagc gaaggctggc
     3841 gcaacgagcg cgactatctc tacgtcccca atctgcacgg cactgattgg gtgaaagaca
     3901 gagagatgta cggagcgatg ttgccgtacg tgatgcatcg cgcggatttg aattatctgc
     3961 tggacatgat gggcgccgag atcgcaatcg ggcattcgta cgtgcgcggc ggcgacatgc
     4021 ccgaagtgcc cgcggttcag ggcggattgc tcggcgccga ctttgcgatt gaaaacggtc
     4081 gttacaaagt cacgcggatc tacgacaacg aaaactggaa tcccgatctg cgatcgccgc
     4141 tgtcttcgcc gggcgcgatt gtgaatgtcg gtgactatat cctggcaatc aacggtatcg
     4201 agttgaaagc gccggacaat atttatcgtt tgctcgacgg cacggcgaat cggcaaacat
     4261 cgctaacggt taacgacaag cccacaatgg aaggcgcgcg tcatgtcacg gtcgtgccgg
     4321 tggtaaacga gcaaactttg cgcacgcgcg cgtgggttga atcgaatcgc cgtctggtcg
     4381 agaagctttc cgacgggcaa ctcgcttacg tctatcttcc gaacaccgga cagccgggct
     4441 acacgagttt caatcgttac tacttcgcgc agcaggataa gaagggcgcg attgtcgacg
     4501 agcgcttcaa cggcggcggg tcggccgcgg attacatcat cgatgttttg caacgcgact
     4561 ttgacggcta cttcaacaac gtcgccggcg atcgttatcc gttcacgagt ccggccgcgg
     4621 gcatctgggg tccgaaggta atgatcatta acgagatggc cggctccggc ggcgacctga
     4681 tgccttacat gttcaagcac cgaaagatcg gattgctggt cggcaagcgc acttggggcg
     4741 ggctggttca cacggctgat actccggttt ttgtcgatgg cggatcgatg atcgctccgc
     4801 gcggaggttt cttcgcgcgc gatggcaagt gggcggttga aaacgaaggc gtcgcgcccg
     4861 atgtcgatgt tgagaactgg cccaaagatg tcatcgctgg ccgcgatccg caactggagc
     4921 gcgcggttca ggaagcaatg cgaatgctca aagaacatcc cgtcgatcgc gcgggaaaag
     4981 aaccgccgcc gccaacctgg ggcgtgcgac ccaagcagcg ataacgtttt ttgccgggtc
     5041 ttcgccgccg gcgagcaagt tcgcgcggct tcaagactta acccataaac tgatgatgat
     5101 gccaagtagt ctatcttcag tttactcacg aaaggagttt cccaatgact ttcaatttcc
     5161 aaaagagatc gctcgtgctc ttcgctggtc tagttatggt cctgctagta actcagacgg
     5221 ttgtctctgc gcctcccttg ccgaatcctg tgctttacct tctcggacag gaaccttatc
     5281 aagctggtgg caagcaatgg attcgctaca agtacgatgt gctcaacaaa gccgcttacc
     5341 ccgcagactt tttcgctgca gctccggcct taccgccttg cggtactaat accaagtcgt
     5401 ctcgtacctg ggtggacatc tttgatcagc gcggaaaacg cctctacggg ttttgcgcct
     5461 taggcaaacc cgataatctt agcgggatct ggtttgcgct ggaggagggc gttgttcccc
     5521 caagctacgt ctacatcgag atgactgatc gccagacaaa caccaagtac aaatcgaacc
     5581 tggctgagac taccccgtag cgcagccgca ggcactgaca agcgactaga tgatcaaata
     5641 cgtcgcattc ctgcgaggca tcaatgtcgg cggcaagagg ctgatcaaga tggaagactt
     5701 gcgccgcgtt gttgaatcgt tgggactgaa gaatgtccgc accttcatag cgagcggcaa
     5761 cgttctgttt gaaacttccc aaaccaatcg cgacgcacta accaggaaga tcgaaaagaa
     5821 actcctaacg gcgttcggtc atgacgtccc agtggtcctg caaacaatcg atgagttgag
     5881 agacattctc aggcgcggtc cttttaagaa tatcaaaccc agccccgacg tgatgatgtg
     5941 cgtcactctc ctcaccggtg aaccaaaagg cagcccgaag ctgccgcttc aatctgcgat
     6001 tgagaatctt gaggttctgg caataaagaa tcgcgccgcg tttattcttt ggcgccggaa
     6061 gaagaacggc atgttcagct ttcccaacaa ctttttcgag aaagagttta aggtgacggc
     6121 aacgacgcgt caatggaaca cgattaaccg gatcgtcgcg ctcgccgagg cagaagccgg
     6181 accgtaacag agggcttgtc cgtatcgccc gcagta
//
LOCUS       DASZZE010000291         4212 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_319811, whole genome shotgun sequence.
ACCESSION   DASZZE010000291 DASZZE010000000
VERSION     DASZZE010000291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4212)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4212)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4212
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_319811"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2106)
                     /gene="mutS"
                     /locus_tag="VHD88_05685"
     CDS             complement(<1..2106)
                     /gene="mutS"
                     /locus_tag="VHD88_05685"
                     /inference="COORDINATES: protein motif:HMM:TIGR01070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0030983 - mismatched DNA binding [Evidence
                     IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HVS21319.1"
                     /translation="MTTANPTPMVRQYRELKSQHPGTLLFFRLGDFYEMFFEDAVIGA
                     RELQITLTARHKERGDSIPMCGVPHHSAANYIAKLVRKGYRVAICEQTEEPSKTKKLV
                     RREVVRIVTPGTPIDPQLLEPRESVYLGAVCAQGDTAGAAFLDISTGEFRATQASGAD
                     AWNRIGADIESYAPRELIFPASLTPLVRAGFSSTARTSPLPLAETNAVPAEDSIGSRS
                     ADSSIALGTPDVFAGATLTPLDDWLWQSEDCAALLIRQFNVRSLDGYGLTGKSEAIRA
                     AGACLRYAQETQRASAAHISDIVYFEPQDHLVLDSVTVRNLELTAALGGSGTARSLLD
                     VIDETVSGMGARLLRSWLLRPSIRRGEVEARHGAVAELHASHIKRDRLRSLLKEVADV
                     ERLAGRLNLGSASPRDLVALRRSLDQVPQIREALVSSESSLLQVLNEAADELADVRSL
                     VAAAIEDDPPAKVVDGGVIRDGYSPELDELRSLSRDAKQTIANLEAAERARSGINSLR
                     IRYNNVFGYFIEVSKANAARVPADYERRQTLANAERFTTAALKEWESKVLGAEERILQ
                     LESELFGLVCRKVAAETLRIQATALSLACLDALSSLAETAVRQRYVRPAMHDGDEIEI
                     VHGRHPVIEVFNAEPFVPNSIYLNNSTDRLLIITGPNMGGKSTVLRQTAIICILAQTG
                     SFVPAEKARLPLLDRVWTRV"
     gene            3129..3803
                     /locus_tag="VHD88_05690"
     CDS             3129..3803
                     /locus_tag="VHD88_05690"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HVS21320.1"
                     /translation="MLSDKGSIGTAVAPTTYSFGENHEQPIAQHAMALVALSHTIPEQ
                     QLYSAMLAEISSVGTRVASLTTRRLMSLTGINGYSTVRRALNGLVNKLSIERQKVAGD
                     NGRHPMVYLVFTPEEIIERRRAIGLSAYPKGVESEHGTSSLARAIRRVVDLRSLSRRE
                     AQVALCCAQGLTNAEIGTRLQVSEQTVKFHLRNIFVKFGVKRRAELVSRLFRDGEVTD
                     NGLKFV"
     gene            3947..>4212
                     /locus_tag="VHD88_05695"
     CDS             3947..>4212
                     /locus_tag="VHD88_05695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21321.1"
                     /translation="MPKKEKEKKKEKKKKKKRKTALIVCRDRKEFWTTQKQFWQWVRD
                     GVIVKTDDSPLTGKFLREHEDLMVLVSHTVLNLAHPNHMREALLS"
BASE COUNT          901 a         1144 c         1232 g          935 t
ORIGIN      
        1 cacgcgcgtc cacacgcgat cgagcaaagg cagccgcgct ttctctgccg gcacgaacga
       61 acccgtttgc gccaggatac aaatgatcgc ggtctgtcgc agcacggtgc ttttgcctcc
      121 catgttcggg ccggtgatga tcagcaggcg atcagttgag ttgttgagat agatgctatt
      181 gggaacaaac ggctccgcgt tgaaaacctc gatcacggga tgacggccgt gaactatttc
      241 gatctcgtcg ccatcgtgca tcgcgggtcg aacgtagcgt tggcgaaccg cagtctcggc
      301 cagcgacgaa agcgcgtcaa gacaagcaag agagagcgcg gtcgcctgga tgcgcaacgt
      361 ctcagccgcg acctttcgac agacgagtcc gaagagttct gattcgagtt gcagaattcg
      421 ctcttccgcg cccagcactt tgctttccca ttctttcaat gccgcggtgg taaacctttc
      481 ggcgtttgcg agagtttgtc gccgttcgta atccgcaggt acgcgcgcgg cgttcgcttt
      541 ggagacttct atgaagtagc cgaagacgtt gttgtagcga atgcggagcg agttgatgcc
      601 gctgcgcgcg cgttctgcgg cttcgaggtt ggcgatcgtt tgcttcgcat cgcggctgag
      661 cgagcgcaac tcgtcgagtt cgggcgaata accatctcga atcacgccgc catcaacaac
      721 tttggcgggc ggatcgtctt cgatcgccgc cgcgacgagt gagcgaacgt cggcaagttc
      781 atccgcggct tcattaagta cttgcagcag cgacgattct gaactgacta gtgcttcgcg
      841 gatttgcgga acctggtcga gcgagcgtcg cagcgcaacg agatcgcgcg gtgaagccga
      901 gccaagattc aaacgcccgg ccagccgctc gacatcagca acttccttca aaagagagcg
      961 caggcgatcg cgtttgatgt gcgatgcgtg cagttcggcc accgcgccgt gtcgggcttc
     1021 gacctcgcca cgtcgaattg atggtcgcag aagccacgag cgcaacaaac gcgcgcccat
     1081 gccgctaacg gtttcgtcaa ttacatcgag cagcgagcgc gctgtgccgg agccgccgag
     1141 cgccgcggta agttccagat tgcgaacggt gacgctatcg agaaccaaat gatcctgcgg
     1201 ctcgaaatag acgatgtcgc tgatgtgagc agcggaagcg cgctgcgtct cctgcgcata
     1261 acgaaggcat gcgcctgcgg cgcgaatcgc ttcgctctta ccagtcaagc cgtaaccgtc
     1321 gagcgagcgg acgttgaatt gcctgatcaa taacgccgcg cagtcttcac tttgccagag
     1381 ccaatcatcg agcggcgtca gcgttgctcc ggcgaagaca tcgggcgtgc cgagtgcgat
     1441 tgatgaatca gcggaccgag aaccaatcga atcttcggca ggtacagcgt tggtttcggc
     1501 tagcggcaac ggcgaagtgc gcgcggtgct tgaaaaaccg gcgcgcacta atggcgtcag
     1561 cgatgcggga aagatcaact cacgcggcgc gtacgattcg atgtctgcgc cgatacgatt
     1621 ccatgcatcg gcgccgctcg cctgcgtcgc gcgaaactcg ccggtcgaga tatcgaggaa
     1681 tgctgcgcct gcggtgtcgc cttgcgcgca gacagcgcca aggtaaaccg actcacgcgg
     1741 ttccagcagt tgcggatcga ttggggtacc cggcgtgacg atgcgcacaa cttcgcgtcg
     1801 cacaagcttc ttcgtttttg aaggctcctc agtttgttcg caaatcgcca cgcgataacc
     1861 tttgcgcacg agcttcgcga tgtagttcgc cgcggaatga tgcggaacgc cgcacattgg
     1921 aatcgaatcg ccgcgctctt tgtgccgtgc ggtcagcgtg atttgcagtt cgcgagcgcc
     1981 gatgactgcg tcttcgaaga acatctcgta aaaatctccg agacggaaga agagcagcgt
     2041 tcccggatgc tgtgatttca gctcccggta ttgcctgacc attggagtag ggttagcggt
     2101 ggtcattcct ctgccagtga gagcgctgat tggcttcaat aattgcgaga gcgaagccta
     2161 cattgtaggg ggataacgtg caagcacgct ctagggttgg tactagtgct gtttgaaaaa
     2221 atcccttgac tcttcctggg cttcagccgt cttcagacgg ctttcccgca gggctgctag
     2281 accagcgctt ttagcgctgg gtcgtgcgag cggcttgacc attagcgcgc ttcagcgtgc
     2341 tttgaactaa cagctttagc aatacggcta gagccaccag ataagcccgt tgaaacgggg
     2401 ctgcgggatt ctggtgcgtc gtgacttcag cctcgccgct tgctttgtta agcttgagta
     2461 catggaggtc aggccgaaaa ggtattgccc ttattgtggc aggcgggttc gccgttccac
     2521 taatcgatgt cccaattgca agcacataat actcacttgg cgaggtgttc ttgtgatcct
     2581 tatcgccgta ctcgtaatta ccgcgttctt tcttgtccga aggctatagc cacacattta
     2641 ccccactact caaagggtcg gtactagtgc tgtttgaaat ccattgactc ttcgtgggct
     2701 tcagccgtgt tcagacggct ttcccgcagg gctgctagac cagcgctttg aatcggtggg
     2761 ctattcattc gcccgctttg cggggcttct tttaagcgct gaaggcggga gatgcgattg
     2821 aatcctcttt cgcatttcgc gccttcagcg ctcagactgt tttgtcgtga ttgatccagg
     2881 ggcgacgctt cgctcgcccc tggctattac atctcacgcc ttcagcgtga agacccaccc
     2941 tgctcaacgc ggtaaatgtt cttgacagtc cagaaccaaa caattagtct cttggcccta
     3001 atcgaaggat tgagcttcgg cgggtcagct cagaagctgc tgtatcagat gttgaaggac
     3061 gcctgacttt tcgtaaagca ggttggcttc tcgtctctcc gacctcggcg atttcataga
     3121 agcaaaacat gctctcagac aagggatcaa tcgggacggc ggtggcgccc acaacctact
     3181 ctttcggcga gaatcacgaa cagccgatcg cccaacacgc gatggcgctc gtggcgctaa
     3241 gtcatacgat ccctgagcaa cagctttact cggcgatgct ggctgaaatt tcaagcgtcg
     3301 gtactcgcgt cgcttcgctc acgacgcgcc ggctgatgag cctgaccggc atcaacggtt
     3361 acagcactgt gcgtcgcgcc ctcaacggac tcgtcaacaa gctaagtatt gaaagacaga
     3421 aagttgctgg agacaatggc cgtcacccaa tggtttacct cgtctttact cctgaggaga
     3481 tcatcgagcg gcggcgcgcc atcggtttgt ctgcttaccc gaaaggcgtg gaaagcgagc
     3541 acggcacttc gtctttggcg cgagccattc ggcgcgtagt tgacctaaga agtttgagcc
     3601 gccgggaagc gcaggtcgcg ctttgctgcg cacagggact tacaaatgcg gagattggaa
     3661 cgagactgca agtcagcgag cagacagtga agtttcactt gcggaatatc tttgtgaagt
     3721 tcggcgtgaa gcgtcgcgct gaacttgtct cgcgtttgtt tcgcgacggg gaagtaaccg
     3781 acaacggatt gaagttcgtt tgaacgcgtc gcttgttgaa gtgacgagca cgcgtgtttg
     3841 aaaaccggaa gctgcctcgc gttcgaggtt tcccttcggg gtcgctgcgt gccttcgagt
     3901 tttgatttga tgaagaacac gcatgagggg agagtgtgtg ttggtcatgc caaaaaagga
     3961 aaaggaaaag aaaaaggaaa agaaaaaaaa gaagaagagg aaaacggccc tgattgtttg
     4021 ccgtgaccgg aaagagtttt ggaccacgca gaagcaattc tggcagtggg taagggacgg
     4081 ggtcatcgtt aagaccgacg acagcccgct gaccggcaag tttcttcgcg aacacgaaga
     4141 cttaatggtg ctggtcagcc atacagtgct gaacctggct catcccaacc atatgcgcga
     4201 agcgctgctt tc
//
LOCUS       DASZZE010000292         3014 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_234662, whole genome shotgun sequence.
ACCESSION   DASZZE010000292 DASZZE010000000
VERSION     DASZZE010000292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3014)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3014)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3014
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_234662"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..531
                     /locus_tag="VHD88_05700"
     CDS             <1..531
                     /locus_tag="VHD88_05700"
                     /inference="COORDINATES: protein motif:HMM:TIGR00654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis isomerase"
                     /protein_id="HVS21322.1"
                     /translation="AHEQADIARALGLAREDLDESLPIQVISTGVGILAVPIRSLAEL
                     GHCRVNQAMLGDIYEAAGAIGCYAFTRETIEIGDARAHARFFIADNIGEDPATGGAAG
                     PLGAYLVHHGASGVDSVDGVYPFVIEQGDFINRPSRIGLEVKGEPGNVERVRVGGTSV
                     VVARGQLEFWVQNRER"
     gene            567..1595
                     /locus_tag="VHD88_05705"
     CDS             567..1595
                     /locus_tag="VHD88_05705"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HVS21323.1"
                     /translation="MTDNQLDLLIIGAGPAGLSAADVAARESLDYLVIEKGTIANTIR
                     QYPVGRRLFSTTNELEMREGALKPVREKPTREELLSHYIHFVLDHDLRINTGEEVIDI
                     ERAEPDGFVVHTKSHDVIGKATSATYHARFILFAIGAMDYPRRLKVPGEDLLKVHHRF
                     VEPYPYVRKEAMVVGGGNSAAEAALFLSEEGARTTMAIWRSDWENRDPKAGAMKHWVR
                     TPLDREIAEGRLRVILYKHLDEITATSVSLTTEDGESITIPNDVVFVLVGSDADLTLL
                     KKLGVETAPGKLTEVPVYDAETFETNVPGVYVAGHFTNARHIKPAIDVPRRIVPLIAQ
                     SLRATVAR"
     gene            1706..2266
                     /locus_tag="VHD88_05710"
     CDS             1706..2266
                     /locus_tag="VHD88_05710"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HVS21324.1"
                     /translation="MSAKSGAARGVRVDRERAHHDALRRAHCLDLSGKCAGRAASRST
                     AWDSGADGRSPPAASTIERLEDELGWTITHFYGLTETTPFITVCEPRPEHAELSSGER
                     AKIKARQGVELMTSGELRVVDEDGNEVPRDGETQGEIVARGNAIMAGYYNDPEATEQV
                     MRGGWFHTGDAAVVHPDGYPSRFAIA"
     gene            2263..2586
                     /locus_tag="VHD88_05715"
     CDS             2263..2586
                     /locus_tag="VHD88_05715"
                     /inference="COORDINATES: protein motif:HMM:NF024591.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21325.1"
                     /translation="MKDVIISGGENISSVEVESVLLRHPSVQEVAIVGLPHERWGEAP
                     HAFVVLKAEANATEDELREFARANLAHFKAPHTVTFISELPKTATGKIQKYVLRSGRA
                     GIATQ"
     gene            2671..>3014
                     /locus_tag="VHD88_05720"
     CDS             2671..>3014
                     /locus_tag="VHD88_05720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21326.1"
                     /translation="MVRSVLGVIVAFILLAILQVASFMTMYGLMGTDWSFKPASYQPS
                     TQWTAMQFVIIIVTSIIAGLICAAIAKGGKAPLALAAVVLVLGLGAALLRTSLHPDTH
                     EVRIGNVSQKDA"
BASE COUNT          663 a          808 c          930 g          613 t
ORIGIN      
        1 gcgcatgagc aagccgacat cgctcgcgca ctcggattgg cgcgcgagga tctggatgag
       61 agtttaccga ttcaagtgat ctctaccggc gtcggcattc tcgccgtgcc gatacgctcg
      121 ctggccgagc tgggccattg ccgggtaaac caggcgatgc tgggcgacat ctacgaagcc
      181 gctggcgcga tcggctgtta tgcgttcacg cgcgagacga tcgagatcgg cgatgcgcga
      241 gcgcatgcgc gtttcttcat cgctgacaac attggcgaag atcccgcaac aggcggcgcg
      301 gcaggaccgc tcggtgcgta tctagtccat cacggcgcga gcggcgtcga ttcggttgat
      361 ggcgtttacc catttgtgat tgagcaaggc gatttcatca atcgtccgag ccgcatcgga
      421 ctggaagtga agggcgagcc cggcaacgtt gagcgagttc gtgtgggtgg gacatcagtg
      481 gttgtagcgc gtggacagtt ggagttttgg gtacagaacc gcgagcggta gcgagcgggt
      541 caccatcaat aagttaaata agaagtgtga ctgataacca actagatctc ttaattatcg
      601 gcgccgggcc tgccgggctt tctgcggcgg acgtggcggc gcgtgaaagt ctcgattatc
      661 tagtaatcga gaagggaacc atcgcgaaca ccattcgcca gtatccggtg ggccgtaggc
      721 tgttctcaac gacgaacgaa ttggagatgc gcgagggcgc gctaaagcct gtgcgcgaga
      781 agcccactcg tgaagaactg ctttcgcatt acattcactt cgtcctcgat cacgatttgc
      841 gaatcaacac cggcgaagaa gtcatcgata ttgagcgcgc cgagccggac ggattcgtcg
      901 ttcacacgaa gagccatgac gttattggca aagctacaag cgcaacttat catgcgcggt
      961 tcatcttgtt tgcgattggc gcgatggact acccgcgacg acttaaggtt cccggcgaag
     1021 acttgttgaa agttcatcat cgctttgtcg aaccttaccc ctacgttcgc aaagaagcga
     1081 tggtcgtcgg cggcggcaac agcgcggccg aggctgcgtt gtttctttcg gaagaaggcg
     1141 cgcgcacgac gatggccatc tggcgcagcg attgggagaa tcgcgatccg aaagccggcg
     1201 cgatgaagca ttgggtgcgc acgccgctcg atcgcgagat tgccgaaggc cgcttgcgcg
     1261 tcattctcta caaacacctt gatgagatca ccgcaacatc cgtcagccta actactgaag
     1321 acggtgagtc gatcacgatt cccaacgacg tggtattcgt gttagtggga agcgacgccg
     1381 atttgacgct gctgaaaaag ttaggcgtcg aaacagcgcc cggcaaactt actgaagtgc
     1441 ccgtctatga cgcggaaaca ttcgagacga acgtgccggg cgtttacgtt gccggccact
     1501 tcacgaacgc tcgtcacatc aagccggcca tcgatgttcc gcggcgcatc gtgccgctga
     1561 tcgcgcaaag cttgcgcgcg acagttgcgc gttgatagag tctcggccat tctcggccgc
     1621 aggttttcta gcgagaaaaa atggaaaccc agctcaccgg ttggacgttc gtaaggacag
     1681 tgacggctgc gggtggtacg cacgtttgtc tgcgaaaagt ggagccgcgc gcggtgttcg
     1741 agttgatcgt gaaagagcgc atcacgatgc tctgcgccgc gcccactgtc ttgatctctc
     1801 tggcaaatgc gccggaagag ctgcgtcgcg cagcaccgcg tgggattcag gtgctgacgg
     1861 ccggtcgccg ccggcggctt cgacaatcga gcgactggaa gacgaacttg gctggacgat
     1921 cacccacttc tatggcctga ctgagaccac gccgttcatc accgtctgcg agccgcgccc
     1981 ggaacacgcg gaactttctt cgggagagag agcaaaaatc aaagcacggc agggcgtcga
     2041 gctgatgacg tcaggcgagc tgcgcgtcgt tgatgaggat ggaaacgaag tgccgcgcga
     2101 cggcgaaacg caaggcgaaa ttgtcgctcg cggcaacgcg atcatggccg gctactacaa
     2161 cgatccggaa gcaactgagc aagtgatgcg tggcggttgg tttcacaccg gcgatgcggc
     2221 cgtggtgcac ccggatggtt acccgtcgag attcgcgatc gcttgaaaga tgtaatcatt
     2281 agcggcggcg aaaacatttc atcagtggaa gtcgagagcg ttttgcttcg acatccttcg
     2341 gtacaggaag tggcgattgt gggacttcct catgagcgct ggggtgaagc gccgcatgcg
     2401 ttcgtagtcc tcaaagccga agcgaacgca accgaagacg agttgcgcga attcgcccgc
     2461 gcaaatctcg cgcatttcaa agcgccgcac acggtcacct tcatcagtga actacccaag
     2521 accgccacgg gcaagattca gaaatacgtt ttgcgatcgg gacgagcggg aatagcgacg
     2581 cagtgagaag aagcttgcgg ataagcctac gtctatgata gacgagcagc ctcaatgcag
     2641 gttcaatcca gctaaagagg agtcgatcgg atggtaagaa gtgtactcgg agtaatcgtc
     2701 gctttcattc tgttggcgat cctacaggtg gcctcgttca tgaccatgta tggtctgatg
     2761 ggcacggact ggtcattcaa gccggcatcg tatcagccat ccacccagtg gacggcgatg
     2821 cagtttgtga tcatcatagt cacttccatt atcgccggcc tgatttgcgc ggccattgcc
     2881 aaaggaggga aggcgcctct ggccctcgcg gccgtggtat tggtgttggg tctcggggcc
     2941 gcgcttttgc gaacgtcgct gcaccccgac actcatgaag tgcggattgg aaacgtttcc
     3001 caaaaggatg cgag
//
LOCUS       DASZZE010000293         4524 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_286274, whole genome shotgun sequence.
ACCESSION   DASZZE010000293 DASZZE010000000
VERSION     DASZZE010000293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4524)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4524)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4524
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_286274"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..695)
                     /locus_tag="VHD88_05725"
     CDS             complement(<1..695)
                     /locus_tag="VHD88_05725"
                     /inference="COORDINATES: protein motif:HMM:NF012703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginase"
                     /protein_id="HVS21327.1"
                     /translation="MSEPLSQHQSSNLDLPGLGHKVSILGVPLGFGQGKGGVDLGPSA
                     IRVAGLVDRIAKLGYEVHDLDDLEIERSRSHPASGERLKFLAEIHAACERLAVEVEKI
                     VDAGELPITIGGDHSIAIGSLAGVVKAFRKRDETLGLIYFDAHADMNTPETTPSGNIH
                     GMPLSALLGYGAPELVNLAGFAPKFDPKLCAHVGARDIDPGERELIRQLGIRFFAMRE
                     IDERGLGACMDEA"
     gene            complement(721..1641)
                     /locus_tag="VHD88_05730"
     CDS             complement(721..1641)
                     /locus_tag="VHD88_05730"
                     /inference="COORDINATES: protein motif:HMM:NF012956.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="discoidin domain-containing protein"
                     /protein_id="HVS21328.1"
                     /translation="MKRCPKCNRTYNDDTLRFCLDDGVPLADASDARPHGRDSDPPPT
                     AVMHEPAPTMKSSGPTIPSYTGPPDVYSPPPREARQSNPILTAGVVAIALLLLALVGI
                     AAYFVLRQPSGNEAAQTNRGSSPTVREASSPAKGQKNDPAPTDTRSADEMITPEPRAA
                     TPLKITVSASSQRLAVQSNTYYPANAIDGRRSTAWIEGADGPGIGEWIRFDFDREIVL
                     HRILIQPGYFKSPQIWAENNRLAAVTAYFSDGSSRELTFADRMESQKADIGAIRTRWV
                     RFVIKSVYHGANPGSTDDTALSEVAFEWEP"
     gene            complement(1868..2407)
                     /locus_tag="VHD88_05735"
     CDS             complement(1868..2407)
                     /locus_tag="VHD88_05735"
                     /EC_number="3.2.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF015597.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0009691 - cytokinin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LOG family protein"
                     /protein_id="HVS21329.1"
                     /translation="MERIVTIFGGSKCRESDLEYSQARRVGELLADAGFTICTGGYLG
                     VMEGASRGAHGRGGRVLGITMSQFKSEPNRYLTDKVATPHFYERLQQLITRSVGFIAL
                     RGGMGTVTEVSLVWNKLQTRVIDSRPLVLLGDCWPPIVREWQRYLAVSDDDVKALDFA
                     GTPEEAVAIINQKSKSVVV"
     gene            complement(2452..3765)
                     /gene="asnS"
                     /locus_tag="VHD88_05740"
     CDS             complement(2452..3765)
                     /gene="asnS"
                     /locus_tag="VHD88_05740"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: protein motif:HMM:NF003037.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004816 - asparagine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006421 - asparaginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HVS21330.1"
                     /translation="MNQTYIRDLSKHVGDEVTLKGWLYNLRSSGKLMFPQLRDGTGVV
                     QCVVAKNAVSENIWEALKGLGQESALIVTGSVREDSRAPGGFEIDVTDAQVVQSAHDY
                     PITPKEHGTEFLLDHRHLWIRSKKQQAILKVRHTVIKAVRDFFDNDGFTLCDTPIFTP
                     AACEGTTTLFEVDYFGDDKAYLTQSGQLYNEATAAAFGKVYCFGPTFRAEKSKTRRHL
                     TEFWMVEPEMTYATLDDVMDLSERFLSYIAARVLESRHEELKTLERDTAKLEAIMPPF
                     PRVHYDKAVKILHEGHERGTLEEKFEWGGDFGAPDEAYISSQFDKPVMVHHYPTAVKA
                     FYMARDKERDELALGVDVLAPEGYGEVIGGGERTTSLEFLQEQIAVHGLPQEAFEWYL
                     DLRRYGSVPHAGFGMGIERCTAWMCGTEHIRETIPFPRMLYRLRP"
     gene            complement(3877..>4524)
                     /locus_tag="VHD88_05745"
     CDS             complement(3877..>4524)
                     /locus_tag="VHD88_05745"
                     /inference="COORDINATES: protein motif:HMM:NF013775.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HVS21331.1"
                     /translation="IQAATPQAFELDSIAGRLAFDEAKLVWELNFFFEHYFGSLRKET
                     LRHAEAAELKAELNDIAAELSACPRVLCHRDYHSANLLVDKQGRIRIVDHQDARMGPA
                     SYDLVSLLMDRQPEPPSLAEVRAHRLFFLEERRRLGLEAIDPDDFAREFRLMTIQRGL
                     KAIGTFSCQTAVYGRGAFYEKHIRPTFLIVQQAAEWLERFPVLRRMISERIGGGS"
BASE COUNT          987 a         1374 c         1189 g          974 t
ORIGIN      
        1 atcgcttcgt ccatgcaggc gcccaagccg cgttcatcga tctcgcgcat cgcaaaaaac
       61 cgaatgccaa gctgccgaat caattcgcgc tcaccgggat cgatgtcgcg cgcgccgacg
      121 tgcgcgcaca acttcgggtc aaactttggc gcaaagcccg cgaggttcac caattccggc
      181 gcaccataac ccagaagcgc ggacagtggc attccgtgaa tgttaccaga cggcgtggtc
      241 tctggcgtgt tcatgtctgc atgagcgtcg aagtagatca agcccagcgt ctcatctcgc
      301 tttcgaaaag ctttcacaac tcccgcaagc gatccgatcg cgatggaatg atcgccgccg
      361 atcgtaatcg gcaattcgcc tgcgtcaacg atcttttcga cctcgacggc gagccgttca
      421 cacgcggcgt gaatctcagc cagaaacttt agcctttcac ccgacgctgg atgcgagcgt
      481 gaccgttcta tctccagatc gtcgagatcg tggacctcgt agccgagctt tgcgattcga
      541 tccacaagtc ccgcgacgcg gatagccgaa gggccaagat cgactccgcc tttgccctgt
      601 ccgaaaccaa gcggcacgcc gagaatgctc accttgtgcc cgagtccggg aagatccaaa
      661 ttgcttgatt gatgttgcga caacggttca ctcactgatt tgctttgagg aagggctcga
      721 tcaaggctcc cactcgaacg cgacttcgga aagcgcggtg tcatccgtcg atcctgggtt
      781 ggcgccgtgg taaaccgact tgattacgaa gcgcacccac cttgtcctga tggctccaat
      841 atccgccttc tgactctcca tgcgatcagc gaacgtcaat tcgcgcgagc tgccgtcaga
      901 aaaataagcg gttacggctg cgaggcgatt gttctctgcc caaatctgcg ggctcttgaa
      961 atagccgggc tgaatcagaa tgcgatgcag gacaatctcg cgatcaaaat cgaagcgaat
     1021 ccactcgccg atgcccgggc cgtccgctcc ttcgatccac gccgtgctgc gtcttccatc
     1081 aatcgcattc gccggatagt aggtgttgct ctgaactgcc aatctctgcg aagacgcgct
     1141 gacggtaatc ttcagaggcg tggccgcacg cggttctggc gtaatcatct cgtcagcgct
     1201 gcgggtgtca gtcggagcag gatcgttctt ttgacctttg gcgggtgatg aggcttccct
     1261 cacggtcggg ctactgcctc gattggtttg agccgcttcg tttccgctcg gctgtcgcag
     1321 aacgaagtag gctgcgatcc cgaccagggc gagcagcagc aatgcaatcg ctacgacgcc
     1381 ggcggtgaga atcggatttg attgtcgcgc ttcgcgcggc ggtggggaat agacatccgg
     1441 cggccccgtg taagaaggaa tcgtcgggcc ggaagatttc attgtcggcg cgggttcatg
     1501 cattaccgca gtcggcggcg gatcagagtc gcgcccgtgc ggtcgtgcat cgctcgcgtc
     1561 tgccaacggc acgccatcgt ccaggcagaa cctcagcgtg tcgtcgttat acgttcggtt
     1621 acatttagga caacgcttca tttttcaaag cctccgcacg gcaagatgat caagccctcc
     1681 catgccgctg tcccaaactg gaggattgtg gttttgcaaa gcgttttcaa ccgcagagga
     1741 cgcggaggta ttcgcagagg aacgcaaagt gagcgcttct ctgcgacctc tgcggttaac
     1801 cgtatccatg tttgccactc agccgaatcc tgacacctta cgctcgggtt aatgtactac
     1861 aacactctca caccacaacg ctcttcgact tttggttgat gattgccaca gcctcctcag
     1921 gtgtgccggc aaaatcgagc gccttgacat cgtcgtcgct gacggccaga tagcgctgcc
     1981 actcgcgcac gattggcggc cagcaatcgc caagcaagac cagcggccgc gaatcgataa
     2041 cccgcgtttg cagcttgttc caaaccagcg aaacttccgt gaccgttccc atgccgccac
     2101 gcaaagcgat gaagcccact gagcgcgtta tcaactgctg caagcgttcg tagaaatgcg
     2161 gagtcgctac tttgtccgtg agataacgat tcggttcgga cttgaactga ctcatagtga
     2221 tacccagcac gcgtccgcca cgtccgtggg cgccgcgact cgcgccttcc ataacaccga
     2281 gataaccacc ggtgcaaatc gtaaagccgg catcagccaa gagttcaccg actcgccgcg
     2341 cctgagagta ttcgagatcc gactcgcggc atttcgagcc gccgaagatt gtgactattc
     2401 gctccatgag ctagcagatg ataaagacaa acaccattcg ccacttacga tttacggcct
     2461 cagtcgatac agcattcgcg gaaatggaat cgtctcgcga atgtgctccg taccgcacat
     2521 ccacgccgtg cagcgctcga tgcccatgcc gaagcccgcg tgcggaacgc tgccatagcg
     2581 tcgcaggtcc aggtaccatt cgaaagcttc ctgcggcaac ccgtgtacgg cgatttgctc
     2641 ttgcaaaaac tcgagcgaag tcgtgcgctc gccgccgccg atcacttcgc catagccttc
     2701 cggcgcgagc acatcaactc ccagggcaag ttcatcgcgc tccttatcgc gcgccatata
     2761 gaaagctttg accgccgtcg gataatgatg aaccatcacc ggcttgtcga actggctgga
     2821 aatgtaagct tcatccggcg cgccaaagtc gccgccccat tcgaacttct cttcaagcgt
     2881 gccgcgctcg tgtccttcgt gcaggatctt caccgctttg tcatagtgaa cacgcggaaa
     2941 cggcggcatg atcgcttcga gcttcgcggt gtcgcgctca agcgtcttca attcttcgtg
     3001 acgagattcc aacacgcgcg cggcgatgta cgaaagaaac ctctcggaga gatccatcac
     3061 gtcatcgagc gtcgcgtaag tcatttccgg ctcgaccatc cagaactccg tcaggtgcct
     3121 tcgcgtcttt gacttctcag cgcgaaacgt cggaccaaag caataaactt tgccaaacgc
     3181 cgcggcggtc gcttcgttgt aaagctggcc cgactgcgtc agataagcct tgtcgtcgcc
     3241 gaagtaatcc acttcgaata gcgtcgtcgt gccttcgcac gccgccggtg tgaaaatcgg
     3301 cgtgtcgcaa agcgtgaagc cgtcgttgtc gaagaaatcg cggacggctt tgatgaccgt
     3361 gtgccgcacc ttcaatatcg cttgttgttt ctttgagcga atccagaggt ggcgatgatc
     3421 caagagaaat tcagtgccgt gctctttcgg cgtgatcgga taatcgtgcg cgctctgcac
     3481 gacctgcgca tccgtcacat cgatttcaaa gccgcccggc gcgcggctgt cttcgcgaac
     3541 gctgccggta acaatcagtg cggattcctg gcccagccct ttcaatgctt cccaaatatt
     3601 ttctgagaca gcattcttcg ccacgacaca ttgcacgaca ccagtcccgt cgcgcagttg
     3661 cgggaacatc agcttgccgc tggaacgcaa gttgtagagc cagcctttca gcgtcacttc
     3721 gtcgccgacg tgtttggata aatctcgtat gtaagtttgg ttcatgctga ttcaaacaaa
     3781 caagccacag agacgcagag acacagagaa accatcctca ccaaaaatga aactgatttg
     3841 cctttctgtt ctctctgtgt ctctgtgcct ctgtggctaa gaaccgccac caattcgttc
     3901 actaatcatt cgtcgcagaa ccggaaaacg ctcaagccat tcggcagcct gctgcactat
     3961 taagaaagtc ggacgaatat gtttttcgta gaacgcgccg cgtccgtaaa cggccgtttg
     4021 acaagagaat gttccgatgg ctttcaatcc gcgctgaata gtcatcaagc gaaactcgcg
     4081 cgcgaaatca tcgggatcga tcgcttccag acctagccgc cgccgctctt cgagaaaaaa
     4141 caaacgatgc gcgcgcacct cagccagcga aggcggctcg ggctgtcgat ccatcaaaag
     4201 cgacaccaga tcgtagctcg ccgggcccat gcgcgcgtcc tgatgatcga cgatgcgaat
     4261 gcgtccttgc ttatcgacca atagattcgc gctgtgatag tcgcgatgac aaagcacgcg
     4321 cgggcaggcc gacaactctg ccgcaatgtc gttcagttca gctttcaact cagccgcctc
     4381 ggcatgccgc aacgtttctt ttcgcagact gccaaagtaa tgctcaaaaa agaaattcaa
     4441 ctcccagacc agcttggcct cgtcaaaggc cagcctgccc gcgattgaat cgagctcgaa
     4501 cgcctggggc gtggctgcct gaat
//
LOCUS       DASZZE010000294         1838 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_205478, whole genome shotgun sequence.
ACCESSION   DASZZE010000294 DASZZE010000000
VERSION     DASZZE010000294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1838)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1838)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1838
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_205478"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..374
                     /locus_tag="VHD88_05750"
     CDS             <1..374
                     /locus_tag="VHD88_05750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21332.1"
                     /translation="VKTESGNLSQGRFAVSDPSADKDSLQLSLLEERELRAGESVTLR
                     VQVSRASLDGQAPVPKARVVLKTLGTSFLPSSTFSITDKHGVAMIIASLPAFDSGRAA
                     ILLRAEADGEFAELRRIIQPV"
     gene            389..685
                     /gene="thiS"
                     /locus_tag="VHD88_05755"
     CDS             389..685
                     /gene="thiS"
                     /locus_tag="VHD88_05755"
                     /inference="COORDINATES: protein motif:HMM:TIGR01683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HVS21333.1"
                     /translation="MLHVQVNGETRELAHELRLSELVEQLSLAPQRVAIELNHKVVRR
                     NEWPTTIVTDGDRIEIVHFVGGGAEARPPGSPAEHLGWGGAVREGAFHLSITRH"
     gene            769..1560
                     /locus_tag="VHD88_05760"
     CDS             769..1560
                     /locus_tag="VHD88_05760"
                     /EC_number="2.8.1.10"
                     /inference="COORDINATES: protein motif:HMM:NF017501.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990107 - thiazole synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HVS21334.1"
                     /translation="MSTAATALTDPLEIAGRAFRSRLIIGTGKYRTFEEMKAAHRASG
                     AEMVTVAVRRVPLDRSSESFLDHLDPSLQILPNTAGCYSAEEAVRTARLAREALNTEW
                     IKLEVIGDQTTLFPDNEQTLEAARTLVKEGFICLPYFSDDLIMAKKLLDAGCPAVMPL
                     AAPIGSGLGVQNPTNLRIMREQLQDATIIVDAGVGTASDATIAMELGADAVLMNTAIA
                     EANDAAKMAEAMKLAIEAGRLAYLSGRMPKRLYASASSPTHGVVR"
     gene            complement(1621..>1838)
                     /locus_tag="VHD88_05765"
     CDS             complement(1621..>1838)
                     /locus_tag="VHD88_05765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21335.1"
                     /translation="LRTGAEQYHVRLAQVEWLSGHEQQQHRLHNGSTEPAQHIHCLES
                     VQLQHQLLFDVHPRQRVMEGELSHTLH"
BASE COUNT          383 a          496 c          566 g          393 t
ORIGIN      
        1 aggttaagac tgagagcggc aatctctcgc agggtcgttt cgctgtgtcc gacccatccg
       61 cggataaaga ctccctgcaa ttatcgttgc tggaagagag ggaactgcgt gcgggcgaat
      121 cagtgacgct gcgcgtgcag gtcagccgcg cgtcgcttga tgggcaagcg cccgtgccaa
      181 aggcgcgcgt ggttttgaaa acgctcggca ccagcttttt accgtcgtca actttttcaa
      241 tcacagacaa gcacggtgta gcgatgataa tcgcgtcgct gccggcgttt gacagtggcc
      301 gcgcggcaat cttgcttcgc gcggaagccg atggagagtt tgccgagttg cgccggatca
      361 tccagccggt ctgaatctct gaacgacaat gctgcacgtt caagtcaacg gtgaaacacg
      421 tgagcttgct cacgaattga gattgagtga gttggtagag caactgtcgc ttgcgccaca
      481 acgcgtcgca atcgaactga accataaggt cgttcggcgc aacgagtggc ccacgacgat
      541 tgtgacggac ggtgatcgaa tagagatcgt tcatttcgtc ggcggcggtg cagaggcccg
      601 acctccgggg tccccggccg agcatctcgg ctggggtggg gcggtgaggg agggcgcctt
      661 tcatctgagc attacgcgac actgaacgca tcgacgatcc gcctgatttc ttttttcgtc
      721 gcagcggtgt agagtctttc tagattagga aaaaggaagt tcgtttgcat gtccaccgca
      781 gcaactgcac taaccgaccc tcttgaaatc gccgggcgcg cgtttcgctc acgactgatc
      841 atcggcactg gaaaatatcg caccttcgaa gaaatgaaag ccgcgcatcg cgcatcgggc
      901 gctgagatgg tgaccgtcgc cgtgcggcgc gtgccgctcg atcgcagcag cgaatcgttc
      961 ctcgatcatc tggatccgtc gttacagatt ctccccaaca ccgccggttg ctattcggca
     1021 gaagaagccg tgcgcaccgc gcgtttggcg cgtgaggctt tgaataccga atggattaag
     1081 cttgaggtga ttggcgatca gaccacgctc tttcctgaca acgagcagac tctggaagcc
     1141 gcgcgcacgc tggttaagga aggctttatc tgcctgcctt acttcagcga cgatttgatc
     1201 atggcgaaga aacttctgga cgctggatgt ccagcagtca tgccgctggc cgctccgatt
     1261 ggttcgggac tcggtgttca gaatccaacc aacttgcgca tcatgcgcga gcaacttcag
     1321 gacgcgacga tcatcgtgga cgccggagtc ggcaccgcga gcgacgcgac gatcgcgatg
     1381 gaactcggcg cggatgcggt gctgatgaat accgcgatag cggaagcgaa cgatgcggcc
     1441 aagatggccg aagcgatgaa gctcgcgatt gaagcgggcc ggttggctta cctctcaggt
     1501 cggatgccga agcgactcta cgcgagcgct tcgagtccca cgcacggcgt tgtgcgctaa
     1561 tttattcgca tcccgcgaaa aagaaagcgt catggtgagg gctcaagaaa cctgggccta
     1621 tcagtgaaga gtgtggctaa gctcgccttc catgactctc tgtcgaggat gaacatcgaa
     1681 gagtagctgg tgctgcaact gcacggactc aaggcagtgg atgtgttgcg cgggttcggt
     1741 gctcccgttg tgaagtctgt gttgttgttg ttcgtgtcct gacaaccact caacttgcgc
     1801 aagtcggacg tggtattgct cggcgccggt gcgaagct
//
LOCUS       DASZZE010000295         2215 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_56585, whole genome shotgun sequence.
ACCESSION   DASZZE010000295 DASZZE010000000
VERSION     DASZZE010000295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2215)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2215)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2215
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56585"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..690
                     /locus_tag="VHD88_05770"
     CDS             <1..690
                     /locus_tag="VHD88_05770"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HVS21336.1"
                     /translation="VSESALAPIPPNLDWAEAAAVPEVFMTAHDALFTQCGVQMGERV
                     LIHAAGSGVGTAAIQLVRAAGAFAYGTSRTADKLEKAKEFGLTESVVASGDPMEFVAA
                     VKNWTMDTGVDVVLDLVGAAYLKANLAALATRGRLIFVGTTSGSKAEMDYSIAMSKRL
                     RIMGTALRTRSLEEKATATRLFAQHVVPLLASGAVRPVIDKVFQMEEVRAAHERIESN
                     ESFGKVVLMIE"
     gene            complement(861..1574)
                     /locus_tag="VHD88_05775"
     CDS             complement(861..1574)
                     /locus_tag="VHD88_05775"
                     /inference="COORDINATES: protein motif:HMM:NF025690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4388 domain-containing protein"
                     /protein_id="HVS21337.1"
                     /translation="MSDDHKEPIGEVETALLDAELFIKYGSPDRALKRLRTALEHNPR
                     SIPLRERMREVAASHKHPEEAARHCLALASLYIERDDFDAAHDRLLEAKQLDHRISIA
                     TGLDAIRRARHPELHSKPARKTEPQRMKPGVTFAGDLSVISVFDAIQAIENSRLTGVL
                     MLSNNAQAGRVLFNDGQIVGAESGKLAAHEAFRQIVEIAGGAFNFQKSAQSFPITIEA
                     ASNTNLILDSLRQVDEEKA"
     gene            1771..>2215
                     /locus_tag="VHD88_05780"
     CDS             1771..>2215
                     /locus_tag="VHD88_05780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21338.1"
                     /translation="MNRQAFDTLEFNPLRALVRRGAQTEMGRARLDALEPFDDLLHLQ
                     HALRAVAESIELRQHGSRLSFDGIADATDSISRLKIEGVALEPLALLDLARLCERATE
                     TRATILAERDNAPTLFEIVAELPAELKNLAALLIRKILPGGELDDR"
BASE COUNT          445 a          595 c          678 g          497 t
ORIGIN      
        1 gtttctgaga gcgcgctcgc tccgattccg cctaatttgg attgggccga agccgcagcc
       61 gtgccggaag ttttcatgac cgcgcacgac gcgctgttca ctcagtgcgg agtgcaaatg
      121 ggcgaacggg ttttgattca cgcggcggga tcaggcgtgg gcaccgcggc gattcaactg
      181 gtgcgtgcgg ccggggcttt cgcttatggc acgtcgcgca ccgcagacaa actggaaaag
      241 gcaaaagagt tcggtttgac agagtcggtt gttgcaagcg gtgacccgat ggagttcgta
      301 gcagccgtga agaattggac gatggacacg ggcgtcgatg tcgtgctcga tctcgtcggc
      361 gctgcttact tgaaagcgaa cctcgcggcg ttggcaacca gggggcgttt gatttttgtc
      421 ggcacgacca gtggttccaa ggccgaaatg gattattcaa tagcgatgag caagcgcctc
      481 cggatcatgg gcacggcctt gcgcacacgc tcgctggaag agaaagcaac tgcgacacga
      541 ctgttcgctc agcacgtcgt gcccttgctc gccagcggcg cagtgcggcc ggtaatcgac
      601 aaggttttcc agatggaaga agtgcgcgcg gcccacgaga gaatcgagtc gaatgaaagt
      661 tttgggaaag ttgtgttgat gatcgaatga atctttggag acatgtatca accgcgtgga
      721 cggtaagact ggtcgaacgg tgtggtttaa cttctggaat accaagctga cttacgagcg
      781 taaaatatat gatcagttct cacgtcggcc tgcgtccccg cacgaaagca gcgacaagtc
      841 gccgcactcc aaactccacc tcacgccttc tcttcatcaa cctgcctgag actatccagg
      901 atcaagttcg tattactcgc cgcctcgatc gttatcggaa aggattgcgc ggacttctgg
      961 aaattgaacg cgccgccggc gatttcgacg atttgccgaa acgcttcatg ggcggcgagc
     1021 tttccgctct ccgcgccgac gatctggccg tcgttgaaaa gcacgcgccc cgcctgcgcg
     1081 ttatttgaga gcattagaac accggtcagc cgcgagttct caatcgcctg aatcgcgtcg
     1141 aacacactga tgactgagag atcgccggca aacgtgacgc ctggtttcat gcgttgcggt
     1201 tcggttttcc gcgccggctt tgagtgcagt tccggatgac gcgcgcgccg gattgcgtcc
     1261 agacccgtgg cgatcgagat gcgatggtcg agctgctttg cttccagcag acgatcgtgg
     1321 gcagcgtcga aatcatcgcg ctcgatgtag agactggcca gcgccaggca gtggcgcgcg
     1381 gcttcctcgg gatgtttgtg cgacgcggcc acttcgcgca tgcgctcacg cagagggata
     1441 gatcgggggt tgtgctcgag cgcggtccgt aaacgtttca gcgcgcgatc aggcgagcca
     1501 tactttatga acagctcggc atcaagcagc gcggtttcta cttcgccaat cggttctttg
     1561 tgatcgtcac tcatgcagca tcttgtcagt accacctgcg gcgttagcgg gtaggttctt
     1621 cacgccgaag gcatttgcgg cgcattgccg tctcaaccgt gcaaagttta tcacagggct
     1681 tttagctcgc gggcaggtga tcagttcggt cttttggtgc caggcttcag tctgtagtga
     1741 gccttgatgt taagattgac gattcaaaag atgaaccgac aggctttcga tacgctggaa
     1801 ttcaatccgt tgcgtgcgct ggtgcgtcgc ggcgcgcaaa ccgagatggg cagggcgcgc
     1861 cttgatgcgc tggaaccgtt cgatgatttg cttcacctgc aacatgccct cagagcagtt
     1921 gcggaaagta ttgagttgcg tcagcacgga agtcgtctgt cgttcgacgg aattgccgat
     1981 gctactgatt cgatctcgcg tctgaagatc gaaggcgtgg ccctcgaacc gttggccctt
     2041 ctcgatctgg cacggctctg cgagcgcgcg acggagacgc gcgcaacgat cctcgcggaa
     2101 cgtgacaatg ctccgacgtt gttcgagatc gttgctgagt tacctgctga actgaagaat
     2161 ctggcagcgc ttttgatcag aaagattctg cctggcggcg agcttgatga ccgcg
//
LOCUS       DASZZE010000296         9557 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_234783, whole genome shotgun sequence.
ACCESSION   DASZZE010000296 DASZZE010000000
VERSION     DASZZE010000296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9557)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9557)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9557
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_234783"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..430
                     /locus_tag="VHD88_05785"
     CDS             <1..430
                     /locus_tag="VHD88_05785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21339.1"
                     /translation="DGSYFTFTYSSAGQINLIQRYTSDSVQRSYVAYNYDAVTSDCPR
                     ISATRVWAENWTGINGVPSEVVTQFSLPGDGSHQATAPDGTVYKEFYAGSAGVPPAWG
                     KGLVIQTEVWVSGTRQKWTTTSWTQDNTRSFRSNDTAKLS"
     gene            810..965
                     /locus_tag="VHD88_05790"
     CDS             810..965
                     /locus_tag="VHD88_05790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21340.1"
                     /translation="MFRRTLHRPQPSHFQISGNTVTQNYDYYNDGRISVVHNTTDQNF
                     DRSYSYD"
     gene            complement(1094..1876)
                     /locus_tag="VHD88_05795"
     CDS             complement(1094..1876)
                     /locus_tag="VHD88_05795"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HVS21341.1"
                     /translation="MQRHEEASATVLAKPRYVDSLDDCFFYHTMELPGLGVVDGQWDL
                     RGRFDDYIGGVEVAGKSVIDVGAATGFLSFEAEKRGAARVVSFDMGDARQQTFLPFKE
                     KLYYRDYESFVSYHAITIERWKNAYWLCHRLLNSRAEVCYGNIYDLPRELGQFDVALV
                     GAVLEHLNDQITALASIARLVRETMVVVSPVLETEERIARFEPTADNPDYDYTWWRYS
                     IGVYREVFGMLGFSIASINHAEYYYRYGDRQERRTTIVATRD"
     gene            complement(2030..5023)
                     /locus_tag="VHD88_05800"
     CDS             complement(2030..5023)
                     /locus_tag="VHD88_05800"
                     /inference="COORDINATES: protein motif:HMM:NF021126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhO family protein"
                     /protein_id="HVS21342.1"
                     /translation="MFRPSNSLSRIKSDHVAALAVALAPIVYFFPAIRNHDVLCPDDG
                     IIFNVPLRVAAAQIMKSGHLPLWNPYIFSGMPLLASAQGGLLFPLNWFYLVFSPAVAT
                     NAMVVSSYIVAALGAYLYARRTGASIAGAMTTSLIWQWSGFLVGQISHINIVQTAAML
                     PWVLWAVEGYAGRGNRARGALLAALVAIQAFAGHQQSFAYALMLVTAYAIVMALVNAQ
                     MRARYFSSLAYVAAGVLLAAVQILPTFELLRNSLRSEATYDFFTSFSMPRRFVMAFFA
                     PYIMGGGDGRLFRATYIGEPFYAEFIGYAGALAIMLVLVALLLKPDARTKFWAVAAPV
                     CLVLAFGNRVPLQFYRLIYHVPILNLFRVPARHMMEVEFAIAVLAGRGLTSLAAAREK
                     KRVLLRVAIIGALVFLLTCLVVTWLRPANFHLGREAPVSVLRAPELFMPILFAGVGAW
                     ALWMFARRRRGSTVFLFAVLACDLILWGQSSGWYTSSPKSQEEFWRVPETVEFLRGVA
                     PQSAAEYRILTAPHTFDPEIPPVGPSVSHASDWVLWTQPDVYMMYGIQNAAGYDGFGL
                     ERYGHLAGEMKVWGELTDPNTTLRGDSREIDLCNVRYLLSMRTQSGVRETGFTSTPAD
                     AFSLATEEHGGFMFARDDLGLPNLSAGKLLRFTVAPVEADRVALLTNLSWSENVPNGV
                     AIGRVRLRAQDGRKFEFLLRAGIDSAEWSYDRPDIRARIRHKRPTVATSYEVKDAQGN
                     YEAHTYVTSFALPEKVAIASGEIQVEPVAQSPNLLLSVFRMSLVNASENKTYSLRRES
                     MQVESASTDAKSQESSEPKSDRWKLLTQTHDVDIYENARTLPRAWLASDARVLDESAM
                     LEVIRTGKLPDGSKWEPLRTVLVEAAPANFAAATRSEGHAEITRYEPNEVDLKTEAGA
                     ASILVLSENHYPGWRAYVDGWRVDVMRVDYNLRGVMVPAGKHNVTFAYWPKSVMIGLL
                     ISLLTAAVLAILSVRVKLAQQVVVS"
     gene            5011..6810
                     /locus_tag="VHD88_05805"
     CDS             5011..6810
                     /locus_tag="VHD88_05805"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HVS21343.1"
                     /translation="MDETLNGQSSVFESWSVGGAIWRALKALKRFALAHRAETACACL
                     LLLMSVNLLTAISRKSITNDEVVHIPAGYYHLVAGDFQLNNEHPPLVKMWAALPLLFV
                     QPEEPSPADEPIANSAEKTWGFDEEFWHANRARFLAISFWPRVIMVPVTIALGVFIFA
                     FARTLFGARGAVFAVALFTLEPTMLAHGRIVHTDVPVALTYLVFFFALLNYFRARTLR
                     RALILGLASGLALITKFSMIVLLPLLGCLMLAAFVFAPRLNESRKRVGLHATIVVCLA
                     LFTINAAYQFQSPPVAPADVQWVQARSPGAFDRWMTFFRVGSKVVPTYYLFGQYNVML
                     HNRDGHPTSLLGHYSTMGWRYYFPVAFALKTTLPFLLISIAALSWTLWMWLRKKDNRF
                     LWLLVPLAIYAALSMTSHINIGVRHFLPVYPFLFIAGGALLERLLSVRRARYLAIALA
                     VVTFGWMGVEVARAYPDYMPYMNQLASGHPHWWYLSDSNVEWGDDVGALADYLKARGE
                     TSVRGALSGGWSTLASYDVEFISLAPPNSNSRDTRYVAIGASYLNGSTVPSFQSDGVQ
                     LTEEQRVNYFDQYRRRTPEAIFGGSIFLYREHE"
     gene            6941..8824
                     /locus_tag="VHD88_05810"
     CDS             6941..8824
                     /locus_tag="VHD88_05810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21344.1"
                     /translation="MKRSITIPLLTAVLVCGAALYTFRASHNPPGFFVDESSIAYNAH
                     TISQTGRDEFGEAWPLFFRAFGEHKNPIYVYLLAGLFKVTGPSILTARLLSAFAGVVA
                     ATLIGLLAFRVSRRSDVGLLVAASALLTPWLFEMSHVALEVSLYPLIVALFLLCVRQA
                     STKAEWSRRNVAYLALSLALLTYTYSIGRLLGPLLAVGLVIFASRERMSGIIRVWGLY
                     ALTLLPLIVFQHRHAEALTGRFRLVSYIKPDSSIARIVWEFVKHYAGNLDPRRLFVTG
                     DPDIYQVAHVHGTPAMLAATMLLVIFGVWLVLKYQRSDSWWRFILYGLAASIVPASLT
                     IDYFHMLRLAAMPVFLLVLTVPAFAWLCEEPRRRSALLIVASLTLLQGAFFQWQYQAS
                     ERSSWRRHLFDADYPEKLLPTALAASSSNPIYIADSPPVPGYIQALWYGVVDRLPQNK
                     FVILAAEVPVPENAVVITTESGGPRCNWLAGREPYTVCVEQSPPRVPARLPESGFRAE
                     INVPTPPLRLSRGESSTIAVVVKNVGDTAWLARERVHSPFQLSLGNHWLDRDGNVVIN
                     DNGRATLLRDLRPGEVAQISLVINAPTRAGDYLLEIDMLQEGVSWFGLKGSRTWRGTV
                     RVE"
     gene            complement(8840..>9557)
                     /locus_tag="VHD88_05815"
     CDS             complement(8840..>9557)
                     /locus_tag="VHD88_05815"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HVS21345.1"
                     /translation="GGHVRVSCEANSGGALVRIEDAGQGIASDFLPFVFERFRQADGS
                     KTRAHGGLGLGLSLVKSFVEAHKGSVEAESEGVGFGSRFTVRLPRLDSARATAQRVTK
                     EIETEAQPQTAHLLIVEDDADTLEILQATFEARGFRVTTCASAAEALELAPVNSIDLI
                     VSDIGMPEMDGFEMMKRMRRLASMNDVPAIALTGYASRKDAEMALGAGFNAHVSKPVD
                     PAELTTLIDQLLAKARVAKD"
BASE COUNT         2013 a         2822 c         2640 g         2082 t
ORIGIN      
        1 tgacggcagc tacttcacct ttacgtacag cagcgcggga cagatcaacc tcatccagcg
       61 ctacacctcg gacagcgtgc agcgttccta cgtcgcttat aactatgacg cagtgaccag
      121 tgactgtccg cgcatttccg cgacgcgtgt gtgggctgag aattggacgg gcatcaatgg
      181 tgtgccttcg gaagtggtta cgcaatttag tttgcccggt gacggctcgc accaggcgac
      241 cgcgcccgac ggcactgttt acaaggagtt ctacgccggg agcgcaggcg tcccgcctgc
      301 ctggggaaag ggactcgtca ttcaaaccga agtgtgggta agcggcacgc gacagaagtg
      361 gactacgact tcttggacgc aggacaacac cagatccttt aggagcaacg ataccgcgaa
      421 gctctcatag tctccgcaca gtggaagccc aggagacatt cctagtgggg gcgggggtcc
      481 ggctgacagc cgttttgcgg ccatcgataa tccgggggcg ggctgcacac tagatggcgt
      541 ttatgcacct tgtgactgga tcattcgcat gtccgagagc ggtgcattgg ctttggcgct
      601 aacgctgcgt tccggcaaaa caacaaaagt ggacatccaa gactttggtc tgggaatcta
      661 tggcgtgtgg catcaaggaa gaccgggtcg atctggcaac tcttctgatg agattgatta
      721 ctcaggtgac atccccatcg cgcgaacaaa caatcgcggt aatgatacta caggatattg
      781 ggaattcctc agtactaact ttatcttggg tgttccgcag aaccctgcac cgacctcagc
      841 cttcgcattt ccagatcagc ggcaatacag tcacgcagaa ttacgattac tacaacgacg
      901 gaagaatcag cgtggtccac aacaccaccg accagaattt cgatcggtct tactcttacg
      961 attgacctgc ccccaaaatc cggcagtgaa tcggctgtca gcattcggct ctcagcaaac
     1021 caacaatcag ctatcagcgg tcagaaaaga gtgatcagtg atgggtggat ggtgataaca
     1081 agctcgactc tcgtcagtca cgcgtcgcga caatcgtcgt tcttctttcc tgacgatctc
     1141 cgtagcgata gtagtactcc gcgtggttga tgcttgcgat gctgaagccg agcatgccga
     1201 acacttcgcg atagacaccg atcgaatacc gccaccacgt gtagtcgtaa tccggattgt
     1261 ccgcggttgg ttcgaacctg gcgatccgct cttcggtctc cagcaccggc gaaaccacca
     1321 ccatcgtctc gcgcaccaat cgcgcgatcg aagccagcgc tgtgatttga tcgttcagat
     1381 gctcaagcac cgcgccgacg agcgctacgt caaattgccc aagttcgcgc ggcagatcgt
     1441 aaatgtttcc atagcaaact tcggcgcgcg agttaagcag ccgatgacag agccagtacg
     1501 cgttcttcca tcgctcaatg gtgatcgcat gatacgaaac aaagctctcg taatcgcgat
     1561 agtaaagttt ttctttgaac ggaaggaatg tctgctggcg tgcgtcgccc atgtcaaaac
     1621 ttacgacacg cgcagcgccg cgcttttccg cttcgaaact caggaatccc gtcgccgctc
     1681 cgacatcgat caccgacttg cccgccactt cgacgccgcc aatgtagtca tcaaagcgtc
     1741 cgcgcaaatc ccattggcca tccacgactc ccaagcccgg cagctccata gtgtgataga
     1801 agaaacaatc gtcgagactg tcaacgtaac gcggctttgc cagaacggtc gcgcttgctt
     1861 cttcatggcg ttgcatattt tttgctctcg acctgctgcg tcgtgtccta atttcagctt
     1921 ttctctgcgc agcctttgcg gccgctgcgt ctccgcggtg agattttcgt cactaggatt
     1981 caccgcagag acgcggagaa cgccgaggta acgcagagag gaaatcaaac taagacacta
     2041 ccacctgctg tgcgagcttg acgcgcaccg acaggattgc caaaaccgcc gccgtcagca
     2101 aagaaatcag caatccgatc atcaccgact ttggccagta tgcgaatgtc acattatgct
     2161 tgccggccgg aaccatgact ccgcgcagat tgtaatcaac acgcatcaca tccacgcgcc
     2221 agccatcgac atacgcgcgc cagccgggat agtgattctc gctcaagaca agaattgaag
     2281 ccgcgccagc ttcggttttt agatctactt cgttcggctc gtatctcgtg atttccgcgt
     2341 ggccttccga tcttgtagct gccgcaaagt tcgcaggcgc agcttcgacc agcaccgttc
     2401 gcagcggctc ccactttgat ccgtcgggta gctttcccgt acgaatcact tcgagcatcg
     2461 cgctttcgtc aagcacacgc gcatcagatg ccagccatgc gcgcggcagg gtccgagcgt
     2521 tttcgtagat atcaacgtcg tgcgtttgcg tcagcagctt ccatcgatca ctcttcggct
     2581 cactggactc ctgcgacttg gcatctgtcg aggcgctttc aacttgcatc gattcacgtc
     2641 gcaatgaata ggtcttgttc tcgctcgcat tcaccagcga cattcgaaac acgctcaaaa
     2701 ggagattggg cgactgagcg acgggttcga cttggatctc accgcttgcg atggcgactt
     2761 tttctggaag cgcaaaggaa gttacgtacg tatgcgcttc atagttacct tgcgcgtcct
     2821 tgacctcgta gctggtcgcc accgtgggac gtttgtgccg aatgcgcgcg cgaatgtctg
     2881 gccgatcgta tgaccattcg gccgagtcaa tcccagcgcg cagcagaaat tcaaacttgc
     2941 gcccgtcttg cgctcttaag cgcacgcggc caatcgccac gccgttggga acattctcag
     3001 accacgaaag attcgtcagc agtgcaacgc gatccgcttc gaccggcgcg accgtaaacc
     3061 gcagcagttt acccgcgctc agattcggca gacccagatc atctcgggca aacatgaaac
     3121 cgccgtgctc ttcggtcgcg agcgagaaag cgtcggccgg agtcgaagtg aaacctgttt
     3181 cccgaacgcc agactgcgtt cgcattgaga gcagataccg cacgttgcag agatcgatct
     3241 cgcgactgtc gccgcgaagc gtcgtgttgg gatcagtcaa ttcgccccac actttcattt
     3301 cacccgcgag atggccgtat cgctccaatc caaaaccgtc gtaaccggcg gcgttctgaa
     3361 tcccgtacat catgtaaaca tcgggctgcg tccacagcac ccaatcgctc gcgtgcgaga
     3421 ccgaaggccc gactggcggg atctccggat caaacgtgtg cggcgcagtc aggattctgt
     3481 actcggccgc gctctgcgga gcgactccgc gcaagaactc gaccgtctct ggcacgcgcc
     3541 aaaattcctc ttgcgattta gggctcgacg tgtaccatcc gctcgactgt ccccaaagaa
     3601 tcagatcgca agcgagcaca gcaaacaaga aaacagtcga gccgcgccgt cggcgcgcga
     3661 acatccacag tgcccacgca ccgacaccag caaacaaaat cggcatgaac aactcaggcg
     3721 cgcgcagcac gctgaccggc gcttcgcgtc cgagatgaaa gttcgcgggc cgcaaccatg
     3781 taacgacaag acacgttaac aggaagacga gcgcgccgat gatcgcaacg cgcagcagca
     3841 ctcgcttttt ttcgcgcgcc gctgccagcg aggtcaaacc gcgacctgcc agcacggcga
     3901 tcgcgaactc gacttccatc atgtggcgcg ccgggacgcg gaacaggttg agaattggca
     3961 cgtggtaaat caatcggtag aattgcaacg gcactcgatt tccgaacgcg agcacaagac
     4021 aaacgggcgc ggccacggcc cagaactttg tgcgcgcatc aggcttgagc agaagcgcaa
     4081 ccagcacgag catgatcgcc agcgctccgg cataaccgat gaactcagca tagaacggct
     4141 cgccgatgta agttgcgcga aacaaacgtc cgtcgccccc gcccatgatg taaggagcaa
     4201 agaaagccat gacaaaccgg cgcggcatcg agaacgaggt gaagaaatcg taagtggctt
     4261 cagagcgcaa actgttgcgc agcagttcga acgtcggtag gatttgcacg gccgcgagca
     4321 acacaccggc agcaacgtaa gcaagcgacg agaaataacg cgcgcgcatt tgagcgttca
     4381 cgagagccat cacgattgca taagccgtaa ccagcatgag cgcgtaagcg aaagattgct
     4441 gatgtccggc aaaagcttga atcgcaacca aagcggccag caaagcgccg cgcgcgcgat
     4501 tgccgcgacc ggcatatcct tcgacggccc aaagcaccca cggcagcatc gccgcggtct
     4561 gaacaatgtt aatgtgactg atctgtccga cgaggaaacc gctccattgc cagatcaaac
     4621 tcgtcgtcat ggcgcccgcg attgatgctc cggtgcgacg cgcgtaaagg taagcgccca
     4681 aggcggcgac gatgtatgac gatacgacca tcgcgtttgt ggcgacagcg ggcgagaaga
     4741 cgagatagaa ccagttcaga ggaaacagca atccgccctg ggctgaggcc aagagcggca
     4801 tgccgctgaa gatgtaagga ttccaaagcg gcagatggcc tgatttcatg atctgagcgg
     4861 cggcgacgcg caacggaacg ttgaagatta ttccgtcgtc aggacacagc acatcgtgat
     4921 ttcgtatcgc cggaaaaaaa tagacaatcg gcgccagcgc aacggcaagc gcggcaacgt
     4981 ggtcagactt gatcctagag agagagttgg atggacgaaa cattaaatgg tcagagttcg
     5041 gtcttcgaga gttggtccgt cggcggcgcg atatggcgcg cgctcaaagc cctcaagcga
     5101 ttcgctctcg cacatcgggc tgaaacggcg tgcgcttgtc tgctactcct gatgtctgtg
     5161 aatctgctca cggccatttc gcgcaagagc atcaccaacg acgaagtcgt gcacattccg
     5221 gccggatact atcatctggt cgccggcgat ttccaactca acaatgaaca tccgccgctc
     5281 gttaagatgt gggccgcgtt gccgcttctc tttgtccagc ctgaagagcc gtccccggcg
     5341 gacgagccaa ttgcgaattc cgccgagaag acctggggat ttgatgaaga gttttggcac
     5401 gcgaaccgcg ctcgtttttt ggcaattagt ttctggcctc gcgtgattat ggtgccggta
     5461 actattgcgc tcggcgtttt tattttcgcg ttcgcgcgga cactctttgg cgcgcgcggg
     5521 gcggtgttcg cggttgcgct ctttactctt gagccgacca tgctggcgca cggacgcatc
     5581 gtccacacag acgtgcccgt cgcgctcact taccttgtgt ttttctttgc gctcctgaat
     5641 tatttcagag cacgtacgct gcggcgcgcg cttattctcg ggttggcgag cgggttggcg
     5701 ctgatcacaa agttctcgat gatcgttttg ctgccgctgc tcggatgcct gatgctcgcg
     5761 gcgtttgttt tcgcgccgcg cctgaatgaa agtcgaaagc gagtcggact tcacgcgaca
     5821 atcgtagtgt gtctggctct cttcaccatc aacgcggcct accagtttca aagtccgcca
     5881 gttgcgccgg cggacgtgca gtgggtgcaa gcgagatcgc ccggcgcctt cgatcgatgg
     5941 atgacgtttt ttcgtgtcgg ctcaaaggtc gttccaactt attatctctt tggtcaatac
     6001 aacgtcatgc tccataaccg cgacgggcat ccgacgtcgc tgctcgggca ttacagcacg
     6061 atgggctggc ggtattactt tcccgtcgcg ttcgctctga agacgacgct tccgtttctg
     6121 ctcatttcta tcgcggcgct ctcgtggaca ctgtggatgt ggttgagaaa aaaagacaac
     6181 cgctttctct ggttgctcgt cccgttagct atctacgcag cgctctcaat gaccagccac
     6241 atcaacatcg gcgtgagaca ctttcttccg gtctatccgt tcctgttcat cgccggcggc
     6301 gcgctgcttg aacgattgct cagcgtgcga cgcgcgcgtt atctggcgat cgcgctcgcg
     6361 gtcgtgacgt ttggctggat gggcgtcgaa gtcgcgcgcg cttatcctga ttacatgcct
     6421 tacatgaatc agctcgcgtc gggacatccg cactggtggt atctgtccga ctcaaacgtc
     6481 gaatggggcg acgacgtagg cgcgctggcc gattatctga aagctcgtgg agagacgagc
     6541 gtgcgcggcg cgctgtctgg tggatggagc acgctcgcat catacgacgt cgagttcatc
     6601 agcttggcgc caccgaattc gaattcgcgc gacactcgct acgtcgccat tggcgcaagc
     6661 tatctgaatg gttcaactgt gccatcgttt cagtcggacg gcgtgcaact taccgaagaa
     6721 caaagagtca actattttga ccagtatcgc cggcgcacgc ccgaagccat ctttggtggt
     6781 tcgatttttc tttatcgcga gcacgaatga attcacatgt gagaggtcgg gattcttctc
     6841 atttcagttt cgggcgccgc tggccgagtt tgcccgcgag caggagccgc acgcccgaag
     6901 ccgtcttcgg tggctccatc tatctctatc gcgagcgcga atgaaacgct caatcacgat
     6961 tccgttgctc accgctgtgc ttgtctgtgg cgcagcgctt tacacttttc gcgcgtccca
     7021 caacccgcct ggcttctttg tggacgagtc atcaatcgcc tacaacgccc ataccatttc
     7081 gcaaaccgga cgcgacgagt ttggtgaagc ctggccgcta ttcttccgcg cgttcggcga
     7141 acataagaat ccgatttacg tttacctgct ggccggtctc ttcaaagtga cgggcccgag
     7201 cattctcacc gcgcgattgc tgagcgcttt cgctggagtc gtcgcggcca ccttgattgg
     7261 attgttagct tttcgcgttt cgcgtcgcag tgacgtcgga ctgctggtcg ctgcgtcggc
     7321 gctgctcacg ccgtggcttt tcgagatgag ccacgtcgca ttggaagtgt cgctttaccc
     7381 gctcatcgtc gcgctgtttt tgttgtgcgt gcgacaagct tcgacgaaag cggagtggag
     7441 caggcgcaac gtcgcatatc ttgcgttgtc gctcgcgctg ttgacttaca cttattcgat
     7501 cggccgtttg ctcgggccgc tgctcgccgt tggactagtc attttcgcta gtcgcgagcg
     7561 aatgtctggc atcatacgcg tgtggggact ttatgctttg acgctgcttc ctttgatcgt
     7621 gtttcagcat cgtcacgctg aagcgctcac cggtagattc aggctggtaa gctacatcaa
     7681 gcccgatagc tcgatcgcga gaatcgtctg ggagttcgtc aagcactacg ccggcaatct
     7741 cgatcctcga aggctcttcg ttacgggcga cccggacatt tatcaagtcg ctcacgttca
     7801 tggcacgccg gcaatgctgg cggcgacgat gctgctcgta atctttggcg tgtggctcgt
     7861 gctgaaatat caacgaagcg attcctggtg gcgtttcatc ctttacggcc tcgccgcttc
     7921 gatcgtgccg gcgtcgctga ccatcgacta ctttcacatg ctgcgactcg ccgcgatgcc
     7981 ggtgtttctc ctggtgctga ccgtgccggc tttcgcttgg ttatgtgaag agcctcgtcg
     8041 tcggagcgcg cttctgatcg tcgcgtcatt gacgttgctg caaggcgcgt tttttcaatg
     8101 gcaatatcaa gcgagcgagc gctcgtcgtg gcggcgtcat ctcttcgacg ctgactaccc
     8161 tgaaaaactt ctaccgacgg cgttggcggc ttcgtcgtcg aatccgattt acatcgcaga
     8221 ttcgccgccg gtccctggat acattcaggc cttatggtat ggagtcgttg accgcttacc
     8281 acaaaacaaa tttgtgattc ttgcggcgga agtgcccgtg cctgaaaacg cagttgtcat
     8341 cacgacggaa agcggcgggc cgcggtgcaa ttggctcgcc gggagagagc cttacacggt
     8401 ctgtgttgag caaagtccac cgcgcgtgcc tgctcgattg cctgagagcg gcttccgcgc
     8461 tgaaataaat gtgccgactc cacccttgcg actgagccgc ggagagtcat cgaccatcgc
     8521 agttgtcgtt aagaatgtcg gcgacaccgc ctggctcgcg cgtgaacgcg tgcactcacc
     8581 gtttcagttg agtctcggca atcactggct cgaccgcgat ggaaacgtgg tcatcaacga
     8641 caatggccgc gccacgctct tgcgcgattt gcgccccggc gaggtggcgc agatttctct
     8701 agtcatcaac gctccaacac gcgccggcga ttacttactt gaaatcgaca tgctgcagga
     8761 aggcgtgtcc tggttcggct tgaaaggatc gcgaacctgg cgcggaactg tcagagtgga
     8821 atgaagcacg gcccgcacat cagtctttgg cgacgcgagc tttcgccaac aactgatcga
     8881 ttagcgtagt cagttccgct ggatcgaccg gcttcgacac gtgcgcgttg aagcctgcgc
     8941 cgagagccat ctcggcatcc ttccgagagg catagccggt caacgcaatt gcgggaacgt
     9001 cgttcatcga ggcgagccgg cgcattcgct tcatcatctc gaatccgtcc atctccggca
     9061 tgccgatgtc tgagacaatc agatcgattg aattcacagg cgcaagttcc aacgcctcag
     9121 cggccgacgc gcaagtggtc acgcgaaagc cgcgcgcttc gaaagtcgcc tgcaaaatct
     9181 cgagcgtgtc cgcgtcgtcc tcgacgatca aaagatgcgc ggtttgcggc tgcgcttctg
     9241 tttcgatctc ttttgtgacg cgctgcgccg tggcgcgcgc cgaatccagc cgaggcaatc
     9301 gaaccgtaaa gcggctgccg aatcccacgc cttcgctctc agcttcgacc gaacctttgt
     9361 gcgcttcgac aaaacttttt accagagaca aacctaaacc gaggccgcca tgcgccctgg
     9421 tttttgagcc gtccgcctga cgaaaccgtt caaacacaaa cggcagaaag tcggatgcga
     9481 tgccctgacc cgcgtcctcg atgcgcacga gcgcgccgcc gctgttcgct tcgcagctaa
     9541 cgcgcacgtg tccgccc
//
LOCUS       DASZZE010000297         2405 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_41963, whole genome shotgun sequence.
ACCESSION   DASZZE010000297 DASZZE010000000
VERSION     DASZZE010000297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2405)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2405)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2405
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41963"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..929
                     /locus_tag="VHD88_05820"
     CDS             <1..929
                     /locus_tag="VHD88_05820"
                     /inference="COORDINATES: protein motif:HMM:NF014686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HVS21346.1"
                     /translation="LCLPGMSSVTAKTFRDKLAMSVKARDAGIRVPDFVAAINNEEIS
                     EYLDRVPPPWVLKPRSDVSAIGIRKLESAKEVWPAIEEMNKRESLRERASYYLLARFI
                     PGEVFHVDSLVDKGRVVFAGVNKYGRPPMQVAHSGGAYISQTIAHGSEDQRTLKEINR
                     RLIKTMKLDTGATHAEFIKSEADGEFYFLEIACRVGGAYIADVLEAESAINLWREWAR
                     LEVVGDCASRERLKPRKEYAGIILSLAKQEYPDTSAYDDPEIFYRVKKRHHVGLIVRS
                     KKMERVTELLDDYGRRFADDFIAVLPPLERPE"
     gene            complement(1201..1938)
                     /locus_tag="VHD88_05825"
     CDS             complement(1201..1938)
                     /locus_tag="VHD88_05825"
                     /inference="COORDINATES: protein motif:HMM:NF021371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2071 domain-containing protein"
                     /protein_id="HVS21347.1"
                     /translation="MHQNWGKLLFMHWTIDAKTLGPLIPAQLSIDTFDGKAWIAVVPF
                     TMWGIRASFLPPVPGTSAFHELNVRTYVHRNGVPGVWFFSLDAANSLAVWGARTFYHL
                     PYFNAQMSLQLTGETISYSSKRTDQRGAPAEFQTSWNIGEPLAQSQPDSLAFFLTERY
                     CLYSFHRDRLFRSRIFHQPWPLCRATLVSEPPALAGGSSLSEPLALAGGYRSTMIESL
                     GIEQPEGGPILHYAESIAVDIWPLKRT"
     gene            complement(2097..>2405)
                     /locus_tag="VHD88_05830"
     CDS             complement(2097..>2405)
                     /locus_tag="VHD88_05830"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HVS21348.1"
                     /translation="TEELWFTDWEFKGTPWSNPEMYDRWSPHKFVQNFNTPILIITNT
                     LDYRVPEGEGMQLFTAVQRMGVESKLVDFPDEGHWVQKPANSQFWYNTVLGWLDKHLK
                     "
BASE COUNT          551 a          640 c          690 g          524 t
ORIGIN      
        1 atctgtgcct gccgggaatg agcagcgtca ccgccaagac ctttcgcgac aaactggcga
       61 tgagcgttaa ggcgcgggac gccggcatcc gcgttcccga cttcgtcgcg gcaatcaata
      121 acgaagagat cagcgagtat cttgaccgcg ttccgccgcc ctgggtcttg aagccccgct
      181 ccgatgtctc cgcgattgga ataagaaaac tggaaagcgc gaaagaagtt tggccggcga
      241 tcgaagagat gaataagcgc gagagtctgc gcgagcgcgc ttcgtactat ttgcttgcgc
      301 gattcattcc cggcgaagtc tttcacgtcg attcgctcgt cgataagggc cgcgtcgttt
      361 tcgcgggtgt gaataaatat ggtcgtccac cgatgcaggt agcccacagc ggcggcgcgt
      421 acatctcgca gactatcgcg cacggctctg aagatcagcg cacgctgaaa gagattaatc
      481 gccgtttgat taagacaatg aaactcgaca ccggcgccac ccatgccgag ttcatcaaga
      541 gtgaagccga cggcgaattc tattttctcg aaatcgcatg ccgggtcggc ggcgcgtaca
      601 tagcggacgt tttggaagct gagtcagcga tcaatctttg gcgcgaatgg gcgcgtttgg
      661 aagtagtcgg cgattgcgca tcgcgcgaga gattaaagcc gcgaaaagaa tacgcgggta
      721 tcattctttc gctggcgaaa caggaatacc cggacacttc cgcttatgac gatccggaga
      781 ttttctatcg ggtgaagaag cgccatcacg tcggcttgat tgtgcgctca aagaaaatgg
      841 agcgcgtgac tgagttgctt gatgattatg gccggcgctt cgctgatgat ttcattgcgg
      901 tgctgccgcc gcttgagcgg ccagagtgat ttgttcttct ccgtgccctc cgtgtctccg
      961 tggttaaatc attttccgag aaatactcac cacggagctg ccttgctcgt actgcgacga
     1021 gcagataacg agatgaaact tgccaacccc gaaaaataag gggtttttga gcaagtttct
     1081 aagaaggcac ggagagtggc gctccatcgg gcagaaaccc gaccgtcagg gagggtgcgt
     1141 gatggcatca ggtccgaaag aagcaccctc cctgacggtc gggtttcttc ctcgttctcc
     1201 tcacgttctc ttcagcggcc aaatgtccac cgcgatcgat tctgcgtaat gcaatatcgg
     1261 cccgccctcc ggctgctcga tgccgagaga ttcgatcata gttgatcgat acccacccgc
     1321 taacgcaagt ggttctgaca aggacgatcc gcccgctaac gcaggcggtt ctgacacgag
     1381 cgtcgctctg cacagcggcc acggctggtg aaagatgcgt gaacgaaaca gccggtcgcg
     1441 atgaaacgag taaaggcaat agcgctcggt gagaaagaat gcgagcgagt ccggttgaga
     1501 ctgagccaat ggctcgccga tgttccacga ggtctgaaac tccgctggtg ctccgcgctg
     1561 atcagttcgt tttgaagaat agctgatggt ctctccagtc agttgtagtg acatctgcgc
     1621 attgaagtac ggcaagtgat aaaacgtgcg cgcgccccaa accgcgaggc tgttcgctgc
     1681 gtccaatgaa aagaaccaga cacccggaac gccgttccgg tgaacataag tgcgcacgtt
     1741 gagttcatga aaggcgctgg tgccgggcac cggcggcagg aaagacgcgc gaatgcccca
     1801 catcgtgaaa ggaactacgg caatccacgc cttaccgtcg aatgtatcaa ttgaaagttg
     1861 cgccggaatc agtgggccga gagtttttgc gtcgatcgtc cagtgcatga acagaagctt
     1921 gccccagttc tgatgcatga ggggaaagcc gcttgggcgt gtgcgaatcg ataggcgatc
     1981 gatatccaca gaatttgcgg ccacagatga acgcagatca ccacgggatt ggacaaagaa
     2041 cttaactccg cattcttatc tgcgtgaatc cgtgcttatc tgtggctgat ttgtcttcac
     2101 ttcaaatgct tatcgagcca accgagcacc gtgttgtacc agaactgtga attggcgggc
     2161 ttctgtaccc agtggccttc gtcgggaaag tccaccagct ttgattcgac gcccatgcgc
     2221 tgcacggcgg tgaacaactg cataccttcg ccttcgggca cgcgatagtc gagcgtgttc
     2281 gtgatgatca gaatcggcgt gttgaaattc tgcacgaact tgtgcggcga ccagcgatcg
     2341 tacatctcgg gattgctcca cggcgtgccc ttgaattccc aatcggtgaa ccagagttct
     2401 tcggt
//
LOCUS       DASZZE010000298         2970 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_124510, whole genome shotgun sequence.
ACCESSION   DASZZE010000298 DASZZE010000000
VERSION     DASZZE010000298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2970)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2970)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2970
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_124510"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            196..399
                     /locus_tag="VHD88_05835"
     CDS             196..399
                     /locus_tag="VHD88_05835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21349.1"
                     /translation="MSSTDELNHLREKLRELDAEFNREMLARGFDPAQAENVALPSHL
                     AALYTERERIKAELEELERKTDD"
     gene            392..841
                     /locus_tag="VHD88_05840"
     CDS             392..841
                     /locus_tag="VHD88_05840"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HVS21350.1"
                     /translation="MTEIERILDQLKRAYEGNAWHGPSIREALAGITAEQAHAQPLAN
                     AHSIWETGSSHCSLGNVGRRRLEGDRAQINISSPEDWPPADDTSEAAWEQAKAALDRG
                     HQALVETITRVPESRLDEPIFEGMSTVYITLHGVIQHDLYHAGRLRC"
     gene            complement(879..1736)
                     /locus_tag="VHD88_05845"
     CDS             complement(879..1736)
                     /locus_tag="VHD88_05845"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: protein motif:HMM:NF012673.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008441 - 3'(2'),5'-bisphosphate
                     nucleotidase activity [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HVS21351.1"
                     /translation="MSSAHSNYQHEIDVAVELAREAGALLLEYYKTPLQVDHKDDAGH
                     EEPVTEADRAANDLIVSRLRREFPDDGILAEESIDTGHRLQKSRVWLIDPMDGTKSFI
                     AHDDDFAVQIGLAVDGVSIVGAVYQPVRGILYRAAQDDGAWIEQAGRGAQRMLVSRQS
                     DPHKMILASSRSHRSPRMERVVRSFGFKNEVRRGSVGIKVGLIAEQHADAYIHLSPRT
                     KQWDVCAPEIILREAGGLVTDLFGEPLPYNAARVENPNGIVATNGVAHEMVIENLSPL
                     LAEFGRAPV"
     gene            1871..>2970
                     /locus_tag="VHD88_05850"
     CDS             1871..>2970
                     /locus_tag="VHD88_05850"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HVS21352.1"
                     /translation="MPFEGCATLDGTARYRERFKEVAAENHFRSARNLWLSSIGVGTY
                     LGEADDETDARYAEAIVRAVELGSNVIDTAANYRFQRSERAIGAALTELSQRGFARDE
                     IVVCTKGGYLPFDGAPPRDVRQYIEETFVKPGIASFADIVGGAHCMTPRYLLNQLDQS
                     LANMGLDCVDVYYVHNPESQLSAISQEEFWQRLRAAFEFLEQRVVDGKIRNYGVATWN
                     GFRAEPDSREYHSLSGMVEVAREVGGDEHHFRFIQLPVNLAMPEALFFQNQQLGDEYV
                     NVLEAAENLEVTAIASGSILQGQVSRGLPEAIREPLGSLATDAQTGIQFVRSAPGITT
                     ALVGMSQRAHVEENLQLARIEPAQPDDLISVF"
BASE COUNT          662 a          817 c          859 g          632 t
ORIGIN      
        1 aaggacgtat gatggccacg cgttctcctg aacgaattga attattgaga gcaggtaaga
       61 ctaaaccgtg ggagagttga tttgcaaaga agtggggcag tagcccgacc gtaagggagg
      121 gcgttttcta actgcgttct actgaacacc ccgatcactg agaccaaaac ctcttcgtgt
      181 cgtaaaatgt tcacgatgtc atcaactgac gaactcaacc acctccgcga gaaacttcgc
      241 gaactcgatg ccgaatttaa tcgtgagatg ctcgctcgtg gatttgatcc cgcccaggca
      301 gaaaatgtag cgttaccttc gcacctcgcc gcactttaca ctgaacgcga gaggatcaaa
      361 gcggagcttg aagaattaga aaggaaaacc gatgactgag atcgaacgga ttctggatca
      421 actcaaacga gcgtacgaag gtaacgcgtg gcacggcccg tcaatccggg aagcactcgc
      481 gggaattacc gcggagcagg cccatgcgca accgctcgcg aatgcgcaca gcatctggga
      541 aactggttca tcacattgca gtctgggaaa cgtaggccgg cgacgactgg aaggagatcg
      601 ggcgcaaatc aatatttcct cgccagaaga ttggcccccg gcggacgaca cgagcgaagc
      661 agcttgggaa caggcgaaag cagcgctcga tcgtggccac caagctttgg tcgaaacgat
      721 cacgcgtgtt cccgaatcgc gtttggacga accaatcttc gagggcatgt ccacggttta
      781 catcactctg cacggtgtca tccagcacga cctatatcat gcgggcagat tgcgatgttg
      841 aagaaggcgc tgtagcgcaa gttgccaact tgcgccactc aaaccggcgc gcggccaaat
      901 tctgccagca gtggggacag gttctcaatc accatttcat gcgcgactcc attcgtagcc
      961 acgatgccgt ttgggttctc aacgcgtgca gcattgtatg gcaacggttc gccgaaaaga
     1021 tccgtcacaa gtcctcccgc ttcgcgcaga atgatttccg gcgcacacac atcccactgc
     1081 tttgtgcgcg gcgatagatg aatgtaagcg tcggcgtgct gctcggcaat caagccaacc
     1141 ttgatgccca ccgaaccgcg ccgcacttcg ttcttgaagc cgaatgaacg caccactctc
     1201 tccatgcgcg ggctgcgatg cgaacggctg gaagccagga tcattttgtg aggatcggat
     1261 tgccgtgaca cgagcatgcg ctgtgccccg cgacctgctt gttcgatcca tgcaccatca
     1321 tcctgcgcag cccgatagag gattccgcgc acgggttggt agacggcgcc aacgatacta
     1381 acgccgtcaa cggcgagtcc aatctgcact gcgaagtcgt cgtcatgggc aataaagctt
     1441 ttcgtgccgt ccatcggatc gatcagccac acgcgactct tctgcagacg atgcccggtg
     1501 tcgattgatt cttccgccag aatgccgtcg tcgggaaatt cacgtcgcag ccggctgacg
     1561 atcagatcgt tcgcggcgcg atcggcttca gtgacgggct cttcgtgccc ggcgtcgtcc
     1621 ttgtgatcga cttgcagagg tgttttgtag tactcgagca agagcgcgcc ggcttcgcgc
     1681 gccagttcaa cggcaacgtc tatttcgtgt tggtaattgg aatgagctga tgacatttca
     1741 aacgccgtgc gtttagaaac tatcacaccg ccgcgccgca atctaagtcg gcttgcgagg
     1801 cgcgttgcgc ggcgggtata gtcgttcgcg ctcttatcta atcgacagct agctttagga
     1861 aactcaaccg atgccattcg aaggctgcgc gacgctcgac ggcactgcgc gctatcgcga
     1921 acgtttcaaa gaagtcgcgg ctgaaaatca ttttcggtcg gcacggaatc tttggctatc
     1981 atcgatcggc gtcggcactt atcttggcga ggccgacgat gaaacagacg cgcgctacgc
     2041 ggaagcgatc gttcgcgcgg ttgagctggg atcgaatgtg atcgacaccg ccgcgaatta
     2101 tcgctttcaa agaagcgagc gagccattgg cgctgcgttg actgaactga gtcagcgcgg
     2161 ctttgcgcgt gacgagattg ttgtttgcac gaaaggcggc tatctgcctt tcgatggcgc
     2221 gccgccgcgc gacgtgcggc aatacataga agagactttc gttaagccgg gtatcgcgag
     2281 ctttgccgac atcgttggcg gggcgcactg catgacgccg cgctatctac tgaaccaatt
     2341 ggatcagtct ctcgcgaaca tgggtctcga ctgcgttgac gtttactacg tgcacaatcc
     2401 ggagtcgcag ttatcggcga tttcgcagga agaattctgg cagcgtttgc gcgcagcgtt
     2461 tgaatttcta gagcagcgcg tcgtcgatgg caagataaga aactacggcg tggcgacgtg
     2521 gaacgggttc cgcgctgagc ccgattcgcg cgagtatcat tcgctctcag gcatggtcga
     2581 agtcgcacgc gaagtcggcg gtgacgaaca tcattttcgg ttcattcaac tgccggtgaa
     2641 tctggcgatg cccgaggctt tgttttttca aaatcagcaa ctcggcgatg aatacgtgaa
     2701 tgtgttggaa gcggccgaga atctcgaagt cactgcgatc gccagcggct cgatcttgca
     2761 gggccaggtt tcgcgcggct tgccggaagc gattcgcgaa ccgttgggct cgcttgccac
     2821 ggatgcgcaa acgggtattc aatttgtgcg ctcggccccg ggaatcacga ccgcgctcgt
     2881 gggcatgagc caacgtgcac acgtcgaaga gaatctgcaa ctcgcgcgga tcgagccagc
     2941 gcagccggac gatcttatta gcgtgtttga
//
LOCUS       DASZZE010000299         2340 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_56814, whole genome shotgun sequence.
ACCESSION   DASZZE010000299 DASZZE010000000
VERSION     DASZZE010000299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2340)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2340)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2340
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56814"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..317)
                     /locus_tag="VHD88_05855"
     CDS             complement(<1..317)
                     /locus_tag="VHD88_05855"
                     /inference="COORDINATES: protein motif:HMM:NF024969.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA];
                     GO_process: GO:1901135 - carbohydrate derivative metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HVS21353.1"
                     /translation="MTDRISAIVSQSLEVKRHFFEAHADEVQRAAEMITAAFKAGGKL
                     LLFGNGGSAADAQHIAGELVNRFLRKRRALPAIALTTDGGVLTCIANDTGFENVFARQ
                     IQAL"
     gene            complement(382..567)
                     /locus_tag="VHD88_05860"
     CDS             complement(382..567)
                     /locus_tag="VHD88_05860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21354.1"
                     /translation="MKIDDAAFEAIRLAVETGADPAYWHSRTPEERIVALELMRQRAY
                     GYDERSAPREFKESLKL"
     gene            complement(586..>2340)
                     /gene="uvrA"
                     /locus_tag="VHD88_05865"
     CDS             complement(586..>2340)
                     /gene="uvrA"
                     /locus_tag="VHD88_05865"
                     /inference="COORDINATES: protein motif:HMM:TIGR00630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HVS21355.1"
                     /translation="DRLNNPPSEKVRLALEEMVSPAVCRECKGLRLRADSLSVRVAGR
                     GIADYTSMTIEDAVKAFDRVKLDKREEKIAGLVLREIKTRLRFLETVGLGYLTLDRPS
                     ATLSGGEGQRIRLATQIGSQLRGVLYVLDEPSIGLHPRDNRRLLNTLSALRDLGNTVL
                     VVEHDEETIRRADYVVDLGPGAGTHGGAVVALGTPEAVAGNPDSITGLYIRGVLKIPV
                     PLERRSPNGKAITVRGARHNNLDEIDVAFPLGLFTVVTGVSGSGKSTLVADILYRALA
                     KNLYGSLAEPGKHASIEGLEHIDKVIEIDQSPIGRTPRSNPATYTGLFTPIRELYAML
                     PESRERGYKPGRFSFNVKGGRCEACEGEGMKRIEMNFLPDVYVLCDVCRGARYNRETL
                     SVKYKGKSIAELLDTTVEEALPLLENIPQIKPKLQTLLDVGLGYIKLGQSATTLSGGE
                     AQRIKLAKELSKRATGRTIYILDEPTTGLHFADVHKLLDVLQRLVSVGNTVIVIEHNL
                     DVIKSADYIIDLGPEGGKHGGRVVATGTPEEVAAVRRSHTGHVLKPLLNGNAKRNGKR
                     KSANGAPPIPRDESKKVA"
BASE COUNT          460 a          704 c          658 g          518 t
ORIGIN      
        1 agcgcttgaa tctgtcgcgc gaacacgttt tcgaatccag tgtcgttggc gatgcaggtc
       61 agcacgccgc cgtcagtcgt caaggcgatc gccggtagtg cgcgccgttt ccgcaagaag
      121 cgattaacaa gttcaccggc aatgtgctgc gcgtccgccg cggatcctcc gttgccgaat
      181 agaagaagtt tgccgccagc cttgaacgca gcggtgatca tctcggcagc gcgctgaact
      241 tcgtcggcgt gcgcttcaaa aaagtgccgc ttcacttcga gactttggct gacgattgct
      301 gagatgcggt ctgtcacgat agctctggaa ggtccgtcga gtcctcttcg tctccggacc
      361 gcggcccatc gtgtttgagc ttcacaactt caaagactct ttgaattctc taggagcgga
      421 gcgctcgtcg tagccgtaag cacgctgtcg cattaattcg agcgccacta ttcgctcttc
      481 cggcgtacgc gaatgccagt acgcaggatc ggctcctgtc tctacggcca acctaatcgc
      541 ttcgaacgct gcgtcgtcga ttttcatcct tgagccacga gtatatcacg cgaccttctt
      601 tgattcgtca cgaggaattg gtggcgcgcc gttggctgat ttccttttgc cgttgcgttt
      661 cgcgtttccg ttcagcagcg gcttgagcac atgcccagta tgcgagcggc gcaccgcggc
      721 gacttcttcc ggcgtgccgg tggccactac gcggccgcca tgtttcccgc cctccggtcc
      781 gagatcgatg atgtagtcgg cgctcttgat aacatccagg ttgtgttcga tgacaattac
      841 tgtgtttccg acgctgacca gacgctgaag cacgtcgagc agcttgtgca catcggcaaa
      901 gtgcagcccg gtcgtcggct cgtcgaggat gtagatcgtt ctgcccgtcg cgcgctttga
      961 aagctctttc gccagcttga tgcgctgcgc ttcgccgccg gaaagcgtcg tcgctgactg
     1021 accgagtttg atgtaaccaa gcccaacatc gaggagcgtc tggagcttag gcttaatctg
     1081 cggaatattc tccaacagcg gcaaagcctc ttccacagtc gtgtccagca actcggcaat
     1141 cgatttgcct ttgtacttaa ccgagagcgt ctcgcgattg taacgtgcgc cgcggcacac
     1201 gtcgcagagc acgtaaacgt cgggcagaaa attcatctcg atgcgtttca tgccttcgcc
     1261 ttcgcaagct tcacagcggc cgcctttgac attgaacgag aagcggccgg gcttgtatcc
     1321 gcgctctcgc gactccggca gcatcgcgta tagctcgcgt atcggcgtga acaatcctgt
     1381 gtaagttgcc ggattcgatc gtggcgtgcg cccgatgggc gactgatcaa tctcgatcac
     1441 tttgtcgatg tgttccagcc cttcgatcga cgcgtgcttg cccggctcgg cgagcgagcc
     1501 atagagattt ttggccagcg cgcgataaag aatgtcggcc accagcgttg atttgccgga
     1561 gccggaaacg ccagtcacga cagtgaaaag acccagcgga aacgccacgt cgatctcatc
     1621 cagattattg tgccgcgcgc cgcgaaccgt gattgctttt ccgttcggcg aacgtcgttc
     1681 caaaggaacc ggaattttca gcacgccacg aatgtaaaga ccagtgatcg aatcgggatt
     1741 gccggccacg gcttccggtg tccccagcgc gacaactgcg ccaccgtgcg tgcccgcgcc
     1801 cggtccgaga tcgacaacgt aatccgcgcg gcgaatcgtc tcttcatcat gctcaacgac
     1861 cagcacggtg ttgccgagat cgcggagcgc tgaaagcgtg ttcagcaaac gtcgattgtc
     1921 gcgcggatgc agaccgatcg aaggctcgtc aagcacgtaa aggacgccgc gcagttgaga
     1981 accgatctgc gtggccagac gaatgcgctg gccttcgccg cctgataaag tcgccgacgg
     2041 ccgatccaga gtcagataac caagcccgac agtttccaga aagcgaagtc tggtcttgat
     2101 ctctcgcagc accagtccgg cgatcttttc ttcgcgcttg tcgagcttga cccgatcgaa
     2161 tgctttgact gcgtcttcga tcgtcatcga agtgtaatcg gcaatcccgc ggccagcgac
     2221 gcgcacggag agcgagtctg cgcgcaaacg cagacctttg cattcgcgac aaacggcggg
     2281 cgaaaccatc tcttccagcg ccaggcggac tttctcgctg ggcggattat tcaaacgatc
//
LOCUS       DASZZE010000300         6971 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_92543, whole genome shotgun sequence.
ACCESSION   DASZZE010000300 DASZZE010000000
VERSION     DASZZE010000300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6971)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6971)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6971
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92543"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            265..1530
                     /locus_tag="VHD88_05870"
     CDS             265..1530
                     /locus_tag="VHD88_05870"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HVS21356.1"
                     /translation="MKRSPLLVIFITVFIDLVGFGIVIPVLPYYAEGTRFGATPREVG
                     LLFASYSIMQLIFAPVMGRLSDKHGRRPVLLVSILGTCVGFLILGFATTLWMLFLGRI
                     IDGISGGNISTAQAYIADVTTKENRAKGMGLIGAAFGLGFVFGPAIGGILSRWGINVP
                     FLFAGGLAFANVILLYFTLPETVTPDHPARVSAASGRGWRQLIDSLKRPRLGFVLTIY
                     FLSIVAFSIMTTVFSLFLMFRLGYDAWHNGWIFAFVGIISATIQGGLIGRIVKRFGEP
                     PLVITGTLLFSASLFATPFVGPMIGVIGILGIGALSAVGNALMAPSLTSLASKSASAG
                     EQGSVLGVTQSVASLARAVGPSIAAFLIYSVAAHVGFNGQPHNMSDASILRTFWTASA
                     IQLIAFLLAVYFARAYARKYAAGEIAEAA"
     gene            complement(1596..2528)
                     /locus_tag="VHD88_05875"
     CDS             complement(1596..2528)
                     /locus_tag="VHD88_05875"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HVS21357.1"
                     /translation="MRIPLTLSKKREFDAVGFGLNAVDHLIVVPEYPAFDTKVRFTEY
                     EKSAGGQTASAMVALQRLGLKTAYAGRFGSDTEGRFGLSSLEYEGVNLDFAETIEGAN
                     NQIAFIIIDSRSGERTIVWDRDERLSYCADEAPIELATRGRVLHLDAHDPAACAAMAR
                     AARTVGTIVTADIDNIYEELPELLPLIDVLITSSEFPHRLTGISDERASLVEMKARNG
                     CSVVGATLGARGTLIYCEGQFIESPAFEVPGGCRDTTGAGDAFHGGFIYGMLRGEDLE
                     TCMKLGNAVGALKCRSLGGRVALPTADELKEFLA"
     gene            2530..4482
                     /gene="uvrC"
                     /locus_tag="VHD88_05880"
     CDS             2530..4482
                     /gene="uvrC"
                     /locus_tag="VHD88_05880"
                     /inference="COORDINATES: protein motif:HMM:NF001824.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HVS21358.1"
                     /translation="MAVLSLRLCVLAWDYFSQRRQAAKKAVTLNEKLKAIPTAPGVYL
                     YKDAKGKIIYIGKAKSLRHRVRSYFQSSRAGDFSYGIKTRELVKQIADVEFIVTDNEV
                     EAFILEATLVKQHQPYFNYKLKDDKSYPHLKLTVNEPFPKCVITRRIQNDGALYFGPF
                     LPASMARRTIDLINRTFQLRTCDIEIDGKAPRPCLEYHIKRCLGPCVKGLCTPTEYQE
                     AVRDVRMLLEGRNTELSHLLEERMLKASENTRYELAAKYRDLRKTVIKLSEQQKMATT
                     AESDVDIFGYYREGKRLALQLFTMREGDIVGRRELFWEDLPEDDFNPAEFLSEVLSQY
                     YSSDYVPREIHVPTDFEDRALLEKALSERKGRRVHIVSPQRGEKRDMIDLVEKNAKLA
                     FEQRFRVLKPDMKRVLEEMQETLELPRFPARIESFDISHIQGAENVAGMVVSENGKMN
                     RGEYRKFKIKSVEGANDFASMHEAVLRRYRRVRDEEKSLPDLIMIDGGKGQLSAAAEA
                     MRELDLEAVPMIGVVKPPLRHNEVAYLLVKGREDAPLYLDSHSPILRLIQMIRDETHR
                     YAVTYHRKRRELRDFTSELSAIPGVGEKRKTRLLRQFGSIHKISEASVEELAPFVGRK
                     TAAEIADHFARQRALAESVNATQALW"
     gene            4633..5712
                     /locus_tag="VHD88_05885"
     CDS             4633..5712
                     /locus_tag="VHD88_05885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21359.1"
                     /translation="MGDLTDIAREIINTTRVVTDAANASPGKPVNVTVLPGLSPQVPT
                     NFNLTGTLGGTVGGALSGVLSALVNSVKIKVKYSVTKGGAAVSSSEFKVTPPLANPSD
                     FSELNSLNVAFLLKPPIGDDTELVDAFEYKIVVDLSVDVEGHEVHTGSPPNPPPIGAF
                     PSIEIPVAMPALGIPALLLLSKHSNFNVYDGDNPGQLFVMVRGSSPLRELGTLVATIN
                     RLMSTIKTLQDVLGWGAAFADFTGALTLASTAINTIPTIFFSLGNAHDLGDFGGFDDE
                     ASSSLLIGTAGTQVTLYSQEDFDKETGTIENDEHSVFTAADVGAGLGITTGVGVDKRT
                     SFGDWDTDAGDGMNDSAESVRFGGI"
     gene            complement(6162..6401)
                     /locus_tag="VHD88_05890"
     CDS             complement(6162..6401)
                     /locus_tag="VHD88_05890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21360.1"
                     /translation="MAPTGNEGYNETATRYALKIGGCLLVNAFCALQTVQLGLEFIYA
                     LRMLDALGYNAYWLAAYTPEIHSVYVRYPVATRWN"
     gene            6430..6561
                     /locus_tag="VHD88_05895"
     CDS             6430..6561
                     /locus_tag="VHD88_05895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21361.1"
                     /translation="MDTSGIRRELGYAEEVSFDEALRRTIEWEQANPPESVDPEQFD"
     gene            6565..>6971
                     /locus_tag="VHD88_05900"
     CDS             6565..>6971
                     /locus_tag="VHD88_05900"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HVS21362.1"
                     /translation="MRVQTRGIDLTYDDAGSGPSIVLLHGYPFDRSMWREQIDFLRAR
                     GYRVVAPDLRGFGEMSDKLQFVADADRRETERQAEAYRTITTMADMARDVAALMDELE
                     IDRAVVCGLSMGGYVAFEFVHLFPSRVSALVLAG"
BASE COUNT         1547 a         1851 c         1939 g         1634 t
ORIGIN      
        1 tggagctcgc ggtggcgatg ctcggtatgg ccctggcatt gctgatcacg ggtggtggac
       61 aagcatcagt cgatcgaatg atcggcggac gacgatgaaa catttgccac agaggcacag
      121 aggctcagag agacagaaac caggaacaag caggagagag ccgacaattt tgcaagctca
      181 cgatccaaag caactacacg cctgttttct aattgtctct gcgtttctgt gtctctgtgt
      241 ctctgtggct aaatccagaa tctcatgaag cgttcgccgc tcctcgtcat cttcatcacg
      301 gtcttcatcg atctcgtcgg ttttgggatc gtgattccag tgctgcctta ctatgctgaa
      361 ggcacgcgct ttggcgcgac gccgcgcgaa gtcggtttgc tgttcgcttc gtactcgatc
      421 atgcaactga tttttgcgcc ggtgatgggc agactgtctg acaagcacgg tcgccgacct
      481 gtcttgctcg tcagtattct tggcacttgt gtcggttttc tgattctcgg attcgcgacg
      541 acgctgtgga tgctttttct cggccgcatc attgatggaa tttccggcgg caacatctcg
      601 accgcgcaag cctacatcgc ggatgtcacg acgaaagaaa atcgcgcgaa gggaatggga
      661 ttgatcggag cggcgttcgg gctgggtttc gtttttggtc cggcgatcgg aggcatactg
      721 agccgctggg gaatcaacgt tccatttctc ttcgccggcg gcctcgcttt cgcgaatgtg
      781 attctgcttt acttcactct gccggaaact gtaacgcccg atcatcccgc tcgcgtttca
      841 gccgccagcg gtcgcggctg gcgccagttg attgattcat taaagcgacc gcgcctcggt
      901 tttgttctca cgatttactt tctctcgatc gtggctttct cgatcatgac gactgtgttt
      961 tcgctgttcc tgatgttccg tctgggctat gatgcgtggc acaacggatg gatttttgct
     1021 ttcgtcggaa taatctcagc gacaattcag ggcgggctga tcggaagaat cgtcaagcgt
     1081 ttcggtgaac cgcctctggt aatcactgga acgcttctgt tctcggcgag tttgttcgcg
     1141 actccattcg tgggtccgat gattggagtg attggaatac ttgggatcgg cgcgttgtcc
     1201 gcggttggaa acgcgctgat ggcgccttcg ctgaccagcc tcgcctcaaa gagtgcgagc
     1261 gccggcgaac aaggcagcgt gcttggcgta acgcagtcag tcgcgagcct ggcgcgcgcg
     1321 gttgggcctt caatcgcggc gttcctgatc tacagcgtcg cggcgcacgt cggcttcaac
     1381 ggtcagccac acaacatgag cgacgcttcg atcctcagga ctttctggac cgcttccgcg
     1441 attcagttga tcgcttttct gctagctgtt tattttgcgc gcgcttatgc gcgcaagtat
     1501 gccgcgggtg agattgctga agccgcgtga ggagacgatc cacagattac acagaacccg
     1561 atcatctgtg taatctgcgt aatctgtggc tgaaatcatg ccagaaattc cttcaactca
     1621 tccgccgtcg gtaaggccac gcgcccgccc aagctgcgac acttcaacgc tccaactgcg
     1681 ttgccgagtt tcatgcatgt ttccaaatct tcaccccgaa gcattccgta aataaatccg
     1741 ccgtgaaagg cgtcgccggc gccggtcgtg tcgcgacaac cgccgggaac ttcgaatgca
     1801 ggtgattcaa tgaactgtcc ttcgcagtaa atcagtgtgc ctcgcgcgcc caacgttgcg
     1861 ccgactacgg agcaaccatt acgcgctttc atttcaacca gcgaagcgcg ttcatcgctg
     1921 atgccggtca gtcgatgcgg aaactcgctc gacgtgatca gcacatcaat tagcggtagc
     1981 agctccggca attcttcgta gatgttgtcg atatctgcgg taacgattgt gccgaccgtg
     2041 cgcgcggcac gcgccattgc tgcacaagcc gccggatcgt gcgcgtcgag atgcagcacg
     2101 cggccgcgcg tggcgagctc aatcggcgct tcatcggcgc agtaagacag ccgctcatca
     2161 cgatcccaaa cgatcgtgcg ctcgcccgag cgcgagtcga tgatgatgaa agcgatctga
     2221 ttgttcgcgc cttcgatcgt ttcggcgaaa tccaggttga cgccttcgta ttcgagtgaa
     2281 ctcaatccga atcggccctc ggtgtccgaa ccgaagcgtc ctgcataagc tgttttcaga
     2341 ccgagccgct gcaacgcaac catcgccgac gcggtctgtc cgcccgccga cttttcgtat
     2401 tcagtgaatc taactttggt gtcgaacgcg ggatactcag gcacgacgat caggtgatcg
     2461 accgcgttca ggccgaaacc gaccgcgtcg aattctctct tcttggataa cgtaagcggg
     2521 attcgcaaaa tggctgtcct gtctttgcgc ctttgcgtct tggcgtggga ttatttctcg
     2581 caaaggcgcc aagccgcaaa gaaagccgtg accttaaacg aaaagctcaa agcgattcca
     2641 accgcgcccg gtgtctatct ctacaaagac gcgaagggca agatcattta catcggcaag
     2701 gcgaaaagcc tgcgccatcg cgtccgttcg tattttcaat cgagtcgcgc gggcgatttc
     2761 agctacggca tcaagacgcg cgaactcgtc aaacagattg ccgacgttga gttcatcgtt
     2821 acggacaatg aagtcgaagc cttcatcctg gaagcgacgc tggtcaaaca gcatcaacct
     2881 tactttaatt acaagctaaa agacgacaag tcttatccgc acttgaaact caccgtcaac
     2941 gaaccatttc cgaagtgcgt gatcacgcgc cggattcaaa acgacggcgc actttacttc
     3001 ggtccgtttc tgccggcatc gatggcccgc aggacaatcg atctcatcaa tcgcacgttt
     3061 caactgcgga cctgcgacat tgagattgac ggcaaagcac cgcgaccttg ccttgagtat
     3121 cacatcaaac gctgtctcgg gccgtgcgtc aagggcctgt gtacgccgac ggaatatcag
     3181 gaagcggtgc gcgacgtgcg catgcttttg gaaggccgca acacagagtt gtctcacctg
     3241 ctggaagagc gaatgctgaa agcgtccgag aatacgcgct atgaattggc ggccaagtat
     3301 cgcgacctgc gcaagacggt aatcaaactt tccgagcagc agaagatggc gacgaccgct
     3361 gagagtgacg tggacatctt tggttactat cgcgaaggca aacgactggc gctgcaactg
     3421 ttcacaatgc gcgaaggtga cattgtagga cggcgcgaat tgttctggga agatctaccg
     3481 gaagacgatt tcaacccggc cgagtttttg agcgaagttt tgtcgcagta ctactcaagc
     3541 gattacgttc cgcgcgagat tcacgtgcca acggactttg aagatcgcgc attgctggag
     3601 aaagcgctca gcgagcgcaa aggccggcgg gtgcacatcg tttcgccaca gcgcggcgaa
     3661 aagcgcgaca tgatcgatct cgtcgagaag aacgcgaagc tcgctttcga acagcgcttc
     3721 cgcgtgctaa agcctgacat gaaacgcgtg ctcgaagaga tgcaggaaac tttggagttg
     3781 ccgcgctttc ccgcacgaat cgaatcgttc gacatctcgc acattcaagg cgctgagaac
     3841 gtcgccggca tggtcgttag cgagaacgga aagatgaatc gcggcgagta tcgcaagttc
     3901 aaaatcaaat cagtcgaagg cgcgaacgat tttgcctcga tgcatgaagc ggtgctgcgt
     3961 cgttatcgtc gcgtccgtga cgaagaaaag tccttgcctg atctaatcat gattgacggc
     4021 gggaaaggac agctcagcgc cgcggccgaa gctatgcgcg aactggatct cgaagccgtt
     4081 ccgatgatcg gcgtggtcaa gccgccgctg cgtcacaacg aagttgctta cctgctggtc
     4141 aaaggtcgcg aagacgcgcc tctctatctc gattcgcatt cgccaatcct gcgtctgatt
     4201 caaatgattc gcgacgagac gcaccgttac gccgtcactt atcatcgcaa gcgacgcgag
     4261 ctgcgcgatt tcacttctga actttcagcg attcccggcg tgggggagaa gcgcaagact
     4321 cgtctgctgc gacagtttgg ttcgatccac aaaatctctg aagccagcgt ggaggaactc
     4381 gcgccattcg tcgggcgaaa aactgcggcg gagatcgctg atcacttcgc tcgtcaacga
     4441 gcgctggccg aaagcgtcaa tgcaacgcaa gcattatggt gattatgcgc ttatttgtgg
     4501 acgttttagt aagagtgcgg cgggcgacag cataaccagt tgaaggagca aaagacgagt
     4561 atcgcaaagc cttctggagc ttgtccgaag gatcactgtg tgatatagac gccgattagg
     4621 agtggataaa ttatgggtga tcttaccgac atagcccgtg agattattaa tacaactcgc
     4681 gttgtaacgg atgccgcaaa tgcgagcccg ggcaagccgg tgaatgtcac cgtactaccg
     4741 ggcctcagcc cgcaagtgcc tacaaatttt aacttgacag gcacactcgg aggaactgtc
     4801 ggaggggcgc tttctggtgt tttgagcgcg ctagttaact ctgtcaagat caaggtcaag
     4861 tacagtgtca caaaaggtgg tgcggctgta tcttcctcag aattcaaagt gactccgccg
     4921 ctagccaatc catcggattt ttctgaactg aactcattga atgtcgcttt tctgcttaaa
     4981 ccacccatcg gggatgatac tgagttagtt gatgcgttcg aatacaaaat agtggtagac
     5041 ctgagcgtgg acgtagaggg acacgaggtt catacaggct cgcctcctaa tcctccgccc
     5101 atcggcgctt ttccctcaat cgaaattccc gtggccatgc ctgcgctcgg aatcccggcg
     5161 ctcctccttc tcagcaaaca ttctaacttt aacgtttatg atggagataa tccgggccag
     5221 ctctttgtca tggtgcgggg ttcgtcgccg ttgcgcgaac tcggtacgct ggtggcgact
     5281 ataaatcggc tgatgagcac gatcaagacg ctacaggatg tcctcggctg gggcgctgct
     5341 tttgcggact ttactggcgc tctgacgctg gcctccacgg ccatcaacac gatacctacc
     5401 attttcttta gtcttggcaa cgcgcacgac ctaggtgatt ttggcggctt cgatgacgag
     5461 gccagttcat cgcttttgat tggtactgcg ggaacacaag ttacacttta cagtcaagaa
     5521 gacttcgata aggagacggg cactatcgag aacgatgagc attctgtttt cactgccgct
     5581 gacgttggtg ctggactcgg tataactacc ggcgtcggag ttgacaagcg gacgtcgttt
     5641 ggtgattggg acactgatgc gggtgatggg atgaacgact ccgccgaatc tgtgcgtttc
     5701 ggaggtattt aatggccgct gtacttgatg tgtggattgc gaagcccgga gacgcgtgtc
     5761 tcgtggacga cgatgaatgg cgcgtgcgtg tctttgatgc gcatggcact attttccaat
     5821 gggctggcaa catttatact gatctaccag cgccgcatgc acattgggct ggaacaattc
     5881 ccccgggttg ctatgtcgtg caggctgtaa atgccaaaac cggcgtcgac acggaccacg
     5941 ctatcgtcac agccgcatgt gaagggactg tttgtgtgcg actctttgtg gccggaaagg
     6001 aacggccaca cccagaccct tgtaaaatca ctattaagga agtaacagga ataggagagc
     6061 cggttgctac ttcgatccga gttgccggaa ctgccgtaaa ctgtaaaaag attgaggtca
     6121 gcgttacctg cgctattgcc aagtcacaca cgattgtggt ttcagttcca tcgagtggca
     6181 actggatagc gaacatagac gctgtgaatc tcaggtgtat atgcggcaag ccaataagcg
     6241 ttatagccaa gtgcgtcgag catccggagt gcgtagataa attccaaacc aagctgcact
     6301 gtctgcagcg cgcagaaggc attaaccaat aagcagccgc caatctttaa agcatatcga
     6361 gtagccgttt cgttatatcc ttcattgcct gttggagcca tccttctaat ttcaagccag
     6421 taatgtgtcg tggacacgag cggcattcgc cgtgaactcg gctacgctga agaagtgtca
     6481 ttcgatgaag ctctgcggcg gacgattgaa tgggagcaag caaatccgcc cgagagtgtc
     6541 gatccggagc agttcgatta gtccatgaga gttcagacac gcgggattga tctgacctac
     6601 gacgacgcag gcagcggacc atcaatcgtt ctactgcacg gctatccgtt cgatcgttcg
     6661 atgtggcgcg agcagataga ttttctgcgc gcgcgcggtt atcgcgtcgt cgctcctgat
     6721 ttacgcggct ttggtgaaat gtccgacaaa cttcagtttg tcgccgacgc tgaccgtcgc
     6781 gaaactgaac gacaagctga agcttatcgg acaatcacca cgatggccga catggcgcgc
     6841 gatgtcgccg cgttgatgga tgaattagag atcgatcgcg ccgtagtttg tggactgtcg
     6901 atgggtggct atgtggcatt tgaatttgtt catctgtttc catcgcgggt tagcgcactg
     6961 gttctcgcag g
//
LOCUS       DASZZE010000301         3175 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_138541, whole genome shotgun sequence.
ACCESSION   DASZZE010000301 DASZZE010000000
VERSION     DASZZE010000301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3175)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3175)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3175
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_138541"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(352..1761)
                     /locus_tag="VHD88_05905"
     CDS             complement(352..1761)
                     /locus_tag="VHD88_05905"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HVS21363.1"
                     /translation="MAKKGSVLVVDDEEIMRDVLETLLSSEGYRVDLAKTGEEGLDAY
                     TKRPYDVVLLDVSMPGIGGLRALEEFLKIDGDAVVVMITAYATFDTAIAAWEKGAFGC
                     IRKPFQNEHISATVGAGIKRRRKEEERRSLRQAMSREVDRGAIVGRSDIMQEVFRLIE
                     QVAPARSTILITGESGTGKELIAKALHEASPRAGRSFVTVNSSNIPSELLESELFGHT
                     RGAFTGAIAAKKGLFEVADGGSIFLDEIGDIPPETQVRLLRVIQEREFTPLGDTSPRR
                     VDVRIIAATNIDLKEAVRQGMFREDLYYRLSVVPLELPPLRDRRQDILPLAQHFIRKY
                     NEENGRQVSEQIAPEVLSLLETYSWPGNVRELENAVERAVVIAPGDEITRECLRPEIA
                     DPQTARAVVRDEAGASAGIDVGRGVNFYDEVRRFEIDLIRRALDQTGGHQSRAARLLG
                     MNPTTLNSKIKTYNINLRP"
     gene            complement(1907..>3175)
                     /locus_tag="VHD88_05910"
     CDS             complement(1907..>3175)
                     /locus_tag="VHD88_05910"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HVS21364.1"
                     /translation="VVRGRMVAVIGLGRSADGALLSSEDVEILRTVSTYVAVAIENSL
                     LYQEQSQRAAELELLKEFNESIVESINVGLLAVDLEGNITRLNSALEEIFSIARDEAV
                     GKNIEDLFAEDFADTLRQVLGAEGWQLRQTRQIFKLHTATRAGRSLVLNIALAPLCAD
                     SNEQTGALVVFEDVTQRLQLEEQLQQREKLSSIGLLAAGVAHEVNTPLTGVSSYTQML
                     LGMLSENDPKHALLEKVRRQADRATEIVNNLLNFSRTGSATEFTEINIHRVLDDTLQL
                     LEPQLRRSQIEIVRDYGNELPQVHGNSVKLQQVFTNLILNARDSISNGNGRITLATRN
                     GNDDDSLVVEVADTGVGIAPEDVAKIYDPFFTTKGVGRGTGLGLAVTYGIVQEHSGHI
                     SVSSTPGHGTTFRITLPTSDPRARLQAAVR"
BASE COUNT          667 a          898 c          902 g          708 t
ORIGIN      
        1 agcaacagcg atcgggtggt taatataggg agacgcgtcc tgtcccttgc ggcgctgatt
       61 ccggtgcttg ttcgccgcga acttggcgga gcttgcgccg tctaatctcg gagttgtttg
      121 ttttccagat aagcaatgtg ccaatcgggt attcacgtag aatagagtca aagagttcgt
      181 agatttggta ttcactccac acgaacggtc gctgaatgtt aggtagccag aagccgccat
      241 cttcctctgg gctattgaga aaactgacaa tcttccggat agtctgtttc tgatttttca
      301 taagcggctg tccccttcga gtctttggac tctaggccgc ggcccactcg ttcacggtcg
      361 cagattgatg ttgtaagtct taatcttaga attcagggta gtcgggttca tgccgagcaa
      421 gcgcgcggcg cgtgattgat ggccgccggt ttgatcgagc gcgcggcgaa tcagatcgat
      481 ttcaaagcgt cgcacctcgt cgtaaaagtt gacgccgcgc ccaacgtcaa tgccagcgga
      541 agcgcctgct tcatcgcgaa caaccgcgcg tgctgtctgc gggtcggcga tttcaggccg
      601 caggcactca cgagtgatct cgtcgccggg cgcaatcacc acggcgcgct cgaccgcgtt
      661 ttccagttcg cgcacattgc cgggccacga ataagtttcc aacagcgata gcacttccgg
      721 cgcgatctgt tcagacactt gccgtccgtt ttcttcgttg tactttcgaa tgaagtgctg
      781 cgccagcggc aggatgtcct ggcggcgatc gcgcagcggt ggcaattcca ggggcaccac
      841 ggagagccgg taataaagat cctcgcggaa cattccctgg cgtacagctt ctttcagatc
      901 gatgttggtg gccgcgatga tgcgcacgtc cacgcgccgc gggctggtgt cgccaagggg
      961 cgtgaactcg cgctcctgaa ttacgcgcag caggcgcact tgtgtctcag gcggaatgtc
     1021 gccaatctcg tcgagaaaaa tcgaaccgcc atcagcaact tcgaacagtc ccttcttcgc
     1081 ggcaatcgcg ccggtgaacg cgccgcgcgt gtggccaaac agttcggact ccaacaactc
     1141 tgaaggaatg tttgagctgt tgaccgtgac gaacgagcga cccgcgcgag ggctggcttc
     1201 gtgaagtgct ttggcgatca actccttgcc agtgccgctt tctcccgtaa tcagaatcgt
     1261 ggaacgcgcg ggcgcgacct gttcgatcag tcgaaaaact tcctgcatga tatcggatcg
     1321 gccgacgatt gctccccgat cgacttcgcg gctcatcgcc tgtcgcaacg agcggcgttc
     1381 ttcttctttg cgccggcgtt tgatgcccgc gcccaccgtg gcgctaatgt gttcgttttg
     1441 aaacggcttg cgaatgcagc cgaaggcgcc tttctcccag gcagcgatgg ccgtgtcgaa
     1501 cgtggcgtaa gccgtgatca tcactaccac cgcatcgcca tcgatcttca ggaattcttc
     1561 gagggcgcgt aagccgccaa ttccgggcat cgacacgtcg agcaaaacga cgtcgtaggg
     1621 acgcttggtg taagcatcca aaccttcttc gccggtcttg gcaagatcga cacgatagcc
     1681 ctcggacgaa agcaacgtct cgagcacgtc gcgcatgatc tcctcgtcgt caacgacgag
     1741 cactgaacct tttttcgcca taacgtggca cagacttcag tctgtgttgt cagtgacgca
     1801 ggctcaccaa cgcgaacggt tctgaaatag aagcgagatt attaccgaaa cgaacagcaa
     1861 aaagctaatc gcagagccaa agaatccgct gttgcgtggt ggctaactac cgcacggctg
     1921 cttgcagacg agcgcgagga tcgctggtgg gaagcgtgat gcgaaacgtc gtgccatgtc
     1981 cgggcgtact tgagacgctg atgtgtccgg agtgctcttg aacgatgccg taagttacgg
     2041 ccagtccgag accggtgccc cggccgacgc ctttcgtcgt gaagaacgga tcgtagatct
     2101 tggcaacatc ttcgggcgcg atgcccacac ccgtatcggc gacttcgacc acaagcgaat
     2161 cgtcgtcgtt accatttcga gtcgccagcg tgatgcggcc gttgccgttt gagatcgagt
     2221 cacgcgcatt cagaataaga ttcgtaaaga cctgttggag cttgaccgaa ttgccatgca
     2281 cctgcggcag ttcgttccca tagtcgcgaa cgatttcgat ttggctgcgg cgaagttgtg
     2341 gctccaggag ttgcaaagtg tcatcaagca ctcgatgaat atttatttcg gtgaattcgg
     2401 tcgcgctacc ggtgcgcgaa aaattcaaaa ggttgttgac gatttcggtg gcgcggtcgg
     2461 cctggcgccg cactttttca agcaatgcat gcttgggatc gttttccgat aacatgccga
     2521 gcagcatttg cgtgtaagac gaaacgccgg tgagcggagt attgacttcg tgcgccacac
     2581 ctgcggccag caatccgatc gacgacagct tttcacgctg ttgtagttgt tcttcgagtt
     2641 gcaaacgctg ggtcacgtct tcaaagacca cgagcgcgcc ggtttgttcg ttcgaatcag
     2701 cgcagagggg agccaaagcg atgttgagca cgagcgagcg gcccgcgcgc gtagccgtgt
     2761 gcaacttgaa aatctggcgc gtctgacgca attgccagcc ttccgcaccc aaaacctgac
     2821 gcagcgtgtc cgcaaaatct tcggcgaata ggtcttcgat atttttgccg accgcctcgt
     2881 cgcgagcgat cgaaaaaatt tcttcgagcg ccgagttcaa acgcgtgatg ttgccttcaa
     2941 gatcgacagc cagcaaaccg acattgatcg actcgacaat cgattcattg aactctttga
     3001 gcagctcgag ttccgcggcg cgctgagact gctcctgata gagcaaactg ttttcgatgg
     3061 ccaccgcgac gtaggtcgaa accgtgcgca aaatctcgac gtcttccgat gaaagcagcg
     3121 cgccgtcggc cgatcggcca aggccgatga ccgccaccat gcgtccgcgc acgac
//
LOCUS       DASZZE010000302         1606 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_152981, whole genome shotgun sequence.
ACCESSION   DASZZE010000302 DASZZE010000000
VERSION     DASZZE010000302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1606
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152981"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1606)
                     /gene="carB"
                     /locus_tag="VHD88_05915"
     CDS             complement(<1..>1606)
                     /gene="carB"
                     /locus_tag="VHD88_05915"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: protein motif:HMM:NF003671.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HVS21365.1"
                     /translation="MAIGRTFKESLFKGLRSLEAVKPLRLEDVSDDELQRKLARPNSQ
                     RFSYITYALEHGWSIDEIYRLSRIDRWFLDQLKQVMEIQEQIEGKTLEEIPPDLLRAF
                     KEAALSDRRLAYLTNRTEDEVRAYRKALGLIPVYKRVDTCGAEFESFTPYLYSTYEEE
                     DEAQPTDRQKIMILGSGPNRIGQGIEFDYCCCHASFALHEAGFETIMVNCNPETVSTD
                     YDTSDRLYFEPLTFEDVMNIVDVEKPTGVIVQFGGQTPLNLAMRLNEAGVPIIGTSPD
                     SIDLAEDRKRFGSLLHELGIPQPENGTATSIEAARAIAERIGYPVLVRPSYVLGGRAM
                     AIVYDEETLADYMRTAVDFSHDRPVLIDKFLEQAAEFDVDALADDTACVIAGIQEHIE
                     EAGIHSGDSSCVLPPVRIAEEHLETMRHYTRKLATALTVNGLMNIQFAIKDDRVYVLE
                     VNPRASRTVPFVSKATGVPLARIAALVMAGRKLKEFGLPDELTVDRFYIKSPVFPFRK
                     FPGVDPVLSPEMHSTGEVMGIGETFGE"
BASE COUNT          347 a          439 c          456 g          364 t
ORIGIN      
        1 cttcgccaaa agtctcaccg atacccataa cttctccggt cgagtgcatt tccggactca
       61 gaaccggatc gacgccggga aactttcgga acgggaagac aggcgacttg atatagaaac
      121 gatccacggt tagttcgtca ggcaatccaa attctttcag ctttcgtccc gccatgacca
      181 gcgcggcaat tcgagcgagt gggacgccgg tggcttttga aacaaagggc acggtgcggg
      241 atgctcgcgg attaacttcg agcacgtaaa cgcgatcgtc tttgatcgcg aactgaatgt
      301 tcatcaggcc gttcacggtc aaagcggtcg cgagcttgcg cgtgtagtgc cgcatagtct
      361 cgagatgttc ttcggcgatc cgcaccggcg ggagcacgca tgaagaatcg cctgagtgaa
      421 tcccggcttc ttcgatgtgc tcctggattc cggcaatcac gcacgcggtg tcatccgcca
      481 gggcgtccac gtcaaactcc gcggcctgct cgagaaactt gtcgatcaag acgggccgat
      541 catgcgagaa atccaccgcg gtgcgcatgt agtcggcgag agtttcttcg tcatagacga
      601 tcgccatggc ccggcctccc aggacataac ttggtcgaac cagtaccgga taaccgatac
      661 gctctgcaat cgctctcgct gcttcaatcg aggtagcggt cccgttctca ggttgcggaa
      721 ttcccagttc gtgcaagagc gagccgaagc gctttcgatc ttcagccagg tcgatcgaat
      781 cgggcgatgt gccgatgatc gggacgccgg cttcgttcag gcgcatggcg agattcaaag
      841 gtgtctggcc accgaactgg acgatgacac cggttggctt ctcaacatcg acgatgttca
      901 tcacgtcttc gaaggttagc ggttcgaagt acaaacgatc ggacgtgtca tagtcggtcg
      961 agacggtttc cgggttgcag ttgaccatga tcgtttcaaa gccggcttcg tgcagtgcga
     1021 aagacgcgtg gcaacagcag tagtcgaact cgatgccctg gccgatgcga ttggggccgg
     1081 agccgagaat catgatcttc tgtcgatcgg ttggctgcgc ttcgtcttct tcttcataag
     1141 tcgaataaag atatggagtg aaggattcaa actcagcgcc gcaagtgtct acccgtttgt
     1201 acacgggaat cagaccgagc gcctttcgat aagcgcggac ttcgtcctcg gtgcggttgg
     1261 tcaaataagc gagccggcga tctgaaagcg cggcttcctt aaatgcgcgc agcagatcag
     1321 gcggaatctc ttccagggtt ttaccttcaa tctgctcctg aatctccatc acctgcttga
     1381 gctgatcgag gaaccagcga tcgatacgcg acaagcgata gatttcgtca atcgaccatc
     1441 cgtgttccag cgcataggtg atgtacgaga acctttgcga atttggccgc gccagttttc
     1501 tttgcagttc gtcgtcggat acgtcttcca ggcgcagggg ctttacggct tccagcgaac
     1561 gcaagccttt gaagagcgat tccttgaacg tgcggccgat ggccat
//
LOCUS       DASZZE010000303         1997 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_205743, whole genome shotgun sequence.
ACCESSION   DASZZE010000303 DASZZE010000000
VERSION     DASZZE010000303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1997)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1997)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1997
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_205743"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..336)
                     /locus_tag="VHD88_05920"
     CDS             complement(<1..336)
                     /locus_tag="VHD88_05920"
                     /inference="COORDINATES: protein motif:HMM:NF017019.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF711 family protein"
                     /protein_id="HVS21366.1"
                     /translation="MEYTQAEILQTVRMTEMEHLDIRTVTLGLSLRDCATDSIESTAE
                     RVREKIERVAASLVSTVDQIGDEIGIRIANKRIAVTPVSILTEGARGNPVDLGRAIDE
                     AAGAVGVDFI"
     gene            complement(414..953)
                     /locus_tag="VHD88_05925"
     CDS             complement(414..953)
                     /locus_tag="VHD88_05925"
                     /inference="COORDINATES: protein motif:HMM:NF024637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HVS21367.1"
                     /translation="MLPEITQRCASCGASIREPAMFCPECGKALSQPAAEHAEHESHA
                     VVAASAPTTPRATADDKVAAMSQTSTVLTDDQEATRVQPTPPTSAADDSTKKVDSESL
                     PISKTGKYEKARDSLHRASTATREALADNVKRVEKIRHVSSAMIEEAAYDPSLRFVLV
                     ALALFVIFLVLLLLSKVMG"
     gene            complement(1037..1513)
                     /locus_tag="VHD88_05930"
     CDS             complement(1037..1513)
                     /locus_tag="VHD88_05930"
                     /inference="COORDINATES: protein motif:HMM:NF001220.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HVS21368.1"
                     /translation="MANEELIYRITRAIYERMGASADEAAVEQLVTDIYRTIEPALAR
                     NSGASTSKYGSVGTSFGEATHEGSAERLIISVFGVDHPGIVAGVSQILAEAGCSIVDI
                     NQTVVQGKFAMVIIANTSRSQASATELKERFRTEGEQLGVHVYAQREDLFNAMHRI"
     gene            complement(1640..1972)
                     /locus_tag="VHD88_05935"
     CDS             complement(1640..1972)
                     /locus_tag="VHD88_05935"
                     /inference="COORDINATES: protein motif:HMM:NF015289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EutN/CcmL family microcompartment protein"
                     /protein_id="HVS21369.1"
                     /translation="MFLGKVIGTVWSTKKTPDLEGVRFLVVHPFDLDKQPTTSVVVVA
                     DRLGAGTGETVLCAFGKAARTAIGNQDMSIEAAVVGIVDRVDLTDTQSEELREAARSL
                     GRDNGRSG"
BASE COUNT          440 a          577 c          531 g          449 t
ORIGIN      
        1 gatgaaatcg acgccaaccg cgccggccgc ttcgtcaatc gcgcgaccga gatcgacagg
       61 attgccgcgc gcgccttctg tcaaaattga cacgggcgtt accgcgatgc gcttgttggc
      121 aatgcggata ccgatctcgt cgccgatttg gtcaacggtg ctgaccaggc tcgccgccac
      181 gcgctcgatc ttttcgcgta cgcgctcggc cgtgctttca atcgagtcag tcgcgcaatc
      241 gcgcaagctc agaccgagag tcaccgtgcg aatatcgaga tgctccatct cggtcatgcg
      301 cacggtttgc aggatttcgg cttgggtgta ttccataaga aaggtttcaa gtttcaggtt
      361 tcaagtcgcc ggatagaact tgaaacctta aacttgaaac ttgaaaccag cgcttatccc
      421 atcactttgc tgagcagaag cagcacgaga aagatgacga agagcgctag agccaccagc
      481 acgaagcgaa gactgggatc ataagcagct tcttcaatca tggcggaaga gacatggcgg
      541 attttctcga cgcgcttgac gttatctgcc aacgcttcgc gcgtcgcggt cgatgcacga
      601 tgcaaactgt cgcgagcctt ctcgtacttg ccggtttttg aaattggtaa agattccgaa
      661 tccacctttt ttgtcgagtc gtccgcagca cttgtcggcg gtgttggctg gactctcgtc
      721 gcctcttgat cgtccgttag aacagttgat gtttgcgaca tcgcggcaac tttgtcatcg
      781 gccgttgcgc gcggagtagt gggcgcggac gctgcgacga cggcgtgaga ttcgtgctca
      841 gcgtgctcag ccgccggctg cgaaagcgct tttccgcact cgggacaaaa catcgccggc
      901 tcgcgaatgg acgcgccaca cgaagcacag cgttgagtga tttcaggcag cataagaaag
      961 ggtgtcgggt atttggtgtc gggtgtcggc aatgagtccg acagatcccc gacacctgat
     1021 ccctggcccc tgtctttcaa attcgatgca tcgcattgaa caagtcttcg cgctgagcat
     1081 acacgtgcac cccgagttgc tcgccttcgg tccgaaaacg ttctttcaat tccgtcgctg
     1141 acgcctgtga acgcgaagtg ttagcgatga tcaccatcgc aaactttccc tgcactacag
     1201 tttgattgat atccacgatg ctgcaaccgg cctcagccaa aatctgcgat acgccggcga
     1261 cgatgcccgg atggtcaacg ccgaaaaccg atatgatcaa acgttcagcc gatccttcgt
     1321 gcgtcgcttc gccgaacgac gtgcctacag agccgtattt cgaagttgac gcgccgctgt
     1381 ttctggccag cgccggctcg attgttcgat agatatcggt aaccaattgc tcaaccgcag
     1441 cctcgtccgc ggacgcgccc atccgctcgt agatcgcgcg agtgatacga tagatcaact
     1501 cctcgttagc cattcttgat ttcgaaagcc agaatgaaga tggccacaaa aaggcacaaa
     1561 aacacgagaa aaaagcagaa atcaggaaca aaaccaagct ttaactcttg cgccttttgt
     1621 gccctttcgt ggctaacatt taaccagacc gtccattgtc gcgtcccagt gagcgcgcag
     1681 cctcgcgcaa ttcttcggat tgtgtgtcag tcaaatcgac gcgatcgacg atgccgacca
     1741 ccgctgcttc gatcgacatg tcctggtttc caatcgccgt gcgcgccgct ttaccgaagg
     1801 cgcacagcac ggtttctccc gtgcccgcgc ccagacgatc cgcaacgacg acgacgctcg
     1861 tcgtcggctg tttgtccagg tcgaacggat gcacaaccag aaaacgcacg ccttcaaggt
     1921 cgggcgtctt cttggttgac cagaccgtgc cgatgacttt gcctaagaac atgtcagttg
     1981 tcagtggtta gtagtca
//
LOCUS       DASZZE010000304         2354 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_205817, whole genome shotgun sequence.
ACCESSION   DASZZE010000304 DASZZE010000000
VERSION     DASZZE010000304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2354)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2354)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2354
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_205817"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..929)
                     /gene="argH"
                     /locus_tag="VHD88_05940"
     CDS             complement(<1..929)
                     /gene="argH"
                     /locus_tag="VHD88_05940"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004056 - argininosuccinate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HVS21370.1"
                     /translation="MAKTGELRHNARATQVAIMSDALKQHLWGGRFTGETDRGFADFN
                     RSFGFDRRLFEVDVRASIAHCEGLQAAGVLSAAESDQIKLALKTILERGRSDGYFDQL
                     AAEDVHSFVEARLVEMIGDAGRKLHTGRSRNDQVATDLRLWLRDEIDRLALALRSAQE
                     ALLDLAEAHRDAVIPGYTHLQRAQPLLLAHWCLAYFEMLARDRERFAEVRRRVNVLPL
                     GSAALAGTSYAIDRDAVAHALGFEAVSRNSLDAVSDRDFCIEFASAASLVMMHLSRLA
                     EDIILYATTEFGFFELSDAVATGSSLMPQKKNP"
     gene            1059..1472
                     /locus_tag="VHD88_05945"
     CDS             1059..1472
                     /locus_tag="VHD88_05945"
                     /inference="COORDINATES: protein motif:HMM:NF014864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21371.1"
                     /translation="MQKRNRQKKILSLIRARRIGTQEALRSHLERAGVPATQSSVSRD
                     LEELGIVKHHGSYALPHANGESARGLLSLDIAGDVLVIAKCLPGRASAVAVEIDDAAL
                     PEIIGTLAGEDTIFIAARDQKSQRPLIKKIWELFG"
     gene            1573..>2354
                     /locus_tag="VHD88_05950"
     CDS             1573..>2354
                     /locus_tag="VHD88_05950"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: protein motif:HMM:NF001770.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004055 - argininosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HVS21372.1"
                     /translation="MSDKINKIVLAYSGGLDTSVMLHWLKEQYQCEVVCYCADVGQGA
                     EMDGLDEKAKATGASKLYIEDLREEFVRDYVWTAVKANALYEGVYLMGTSLARPVIAK
                     RQIEIARRENADAVAHGATGKGNDQVRFELTYYALQPDIKVIAPWREWEFKGRTDLMA
                     YAEAYGIPVSATIDKPYSTDRNLMHVSYEGGILEDPWAEPPENIFQMTVSPENAKAEA
                     EYVVIGFEHGEPVSVDDERLDPVALLSKVNELGGAHGIGRVD"
BASE COUNT          539 a          645 c          678 g          492 t
ORIGIN      
        1 tcgggattct ttttttgcgg catcaggctg gagccggtcg ccacagcgtc gctcaattca
       61 aaaaagccga actcagttgt cgcataaaga atgatgtctt cagccagacg cgaaagatgc
      121 atcatgacga gcgacgcggc gctcgcgaat tcgatgcaga agtctcggtc gctgactgcg
      181 tccaggctgt tgcgcgaaac cgcttcgaag cccagcgcat gagcaaccgc atcgcgatct
      241 atagcgtatg aagttccggc cagcgcggct gatcccagcg gcagcacgtt gacgcgcctt
      301 ctgacttcag cgaaacgttc gcgatcgcgc gccagcattt cgaaataggc cagacaccag
      361 tgagcgagta acaacggctg ggcgcgctgc aaatgcgtgt atccgggtat caccgcgtct
      421 cggtgcgctt ctgcgagatc aagcaaagcc tcctgcgcac ttcgcaaggc gagagcaagt
      481 cgatcgattt cgtcgcgcag ccacagacgc aagtccgttg cgacttgatc gttccggctg
      541 cgtccggtgt gcagcttacg accggcatcg ccaatcattt caaccagacg cgcctcgaca
      601 aacgaatgca catcttccgc cgctaactga tcgaagtaac catctgacct gccgcgttcg
      661 agaattgttt tcagcgctaa cttgatctga tcagattcgg cggcactcaa cacgccggcc
      721 gcctgcaagc cttcgcagtg agcgatgctg gcgcgcacgt caacttcaaa cagtcggcga
      781 tcgaaaccga aactgcgatt gaaatcagcg aagccgcggt cggtttcgcc ggtgaaccgt
      841 ccgccccaaa gatgttgttt cagcgcatcg ctcatgattg ctacctgcgt cgctcgcgca
      901 ttgtgccgca actctccagt tttcgccaag ataccttcag acttgacgaa actgcataac
      961 cagcgctatt ttatgcaggt atgcgcagaa aatgcaacta ctttgcatta acgcgcgtct
     1021 gatagaaggt cgacacactt tagtctgtcg agcaaagcat gcaaaagcga aaccggcaaa
     1081 agaagattct cagtctgatt cgcgctaggc ggattggcac gcaggaggcg ctgcgctcgc
     1141 accttgagcg cgccggcgtc ccggccacgc agtcgagcgt gtcgcgcgac cttgaggaac
     1201 tcgggattgt caaacatcac ggctcgtatg cgctgccgca cgcgaacggc gaatcggcgc
     1261 gcggactgtt gagtctcgat atcgctggtg atgtgctggt aatcgccaag tgcttgcccg
     1321 gccgcgcttc cgcggtggcc gtggagattg atgacgcggc gctaccggag atcatcggca
     1381 cgctggcagg cgaagacacg atctttatcg cggcacgcga tcaaaaatcg cagcgacctt
     1441 tgataaagaa aatttgggag ttgtttggat gaaggagaac cagccacagg ggcacagaga
     1501 cacagagcat gctgaaagtt ctcttgcgtc ttctccgtgc ttctttgtct ctgtggcaat
     1561 cgattcctta acatgagtga caagattaat aagatcgtct tggcttactc cggtgggctc
     1621 gacacgtcgg tcatgctgca ctggttgaaa gagcaatacc agtgcgaagt cgtctgctac
     1681 tgcgctgacg ttggtcaggg cgcggagatg gacgggctcg acgaaaaagc aaaagcgacc
     1741 ggcgcgtcaa aactctacat cgaggacctg cgcgaagagt ttgtgcgcga ttacgtttgg
     1801 acggcggtca aggcaaacgc tctctatgaa ggcgtttact tgatgggcac gtcgctcgcg
     1861 cgtccggtga tcgcaaagcg gcaaattgaa atcgcgcgcc gggaaaatgc ggatgccgtc
     1921 gctcacggcg caaccggcaa gggaaacgat caggtgcgat tcgaactgac atactacgcc
     1981 ttgcaaccgg acatcaaagt gattgcgccg tggcgtgaat gggaattcaa aggccgcacc
     2041 gatttgatgg cttacgccga ggcctatggc attccggtca gcgcgacgat cgacaagcct
     2101 tattcgactg atcgcaactt gatgcacgtg tcgtacgaag gcggaattct cgaagaccca
     2161 tgggctgagc cgcctgagaa tatttttcag atgacggttt cgcctgagaa tgcaaaggcc
     2221 gaggccgaat acgtcgtgat cggattcgaa cacggcgagc cagtgtccgt tgatgatgag
     2281 cgtttggatc ctgtcgctct tttgtcaaag gtaaatgagc ttggcggcgc ccatggaatc
     2341 ggacgcgtcg attt
//
LOCUS       DASZZE010000305         2154 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_138676, whole genome shotgun sequence.
ACCESSION   DASZZE010000305 DASZZE010000000
VERSION     DASZZE010000305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2154)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2154)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2154
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_138676"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..486)
                     /locus_tag="VHD88_05955"
     CDS             complement(<1..486)
                     /locus_tag="VHD88_05955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21373.1"
                     /translation="MKSLTQKRGNQERRKTGSASSGSLKFIVHRSSFILPPLSFILFL
                     AVFGAAFYFATSSSDAQTRQRRNGAHSVAARESFTPADRLLVERAIGATCDERVRDPL
                     GSVPIDEMQTRPSLSVGDPAAVAGARRAERLLPTTKQLVANAIVELAKDYDFYTAANR
                     AR"
     gene            complement(517..1296)
                     /locus_tag="VHD88_05960"
     CDS             complement(517..1296)
                     /locus_tag="VHD88_05960"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HVS21374.1"
                     /translation="MTKEFQSIKFAIDDRVARITFARPPLNVFNIAMIREIGSALSEC
                     APQRDLAAIVFAAAPDTRAFSAGVAVEEHGTETVYQMLDSFHAIFRTLVQIAKPAIAV
                     VDGPALGGGCELVAACDIVIASERARFGQPEIKLGVFPPVAAILLPRIIGEKRARELI
                     LTGDLIDASEALRLGLVNYVVPIAELEQATQSVLAKLREVSASSLAMTRAALDLGGRT
                     GFESALADVENLYLHELMKTEDAHEGVRAFMEKRKPEWRHK"
     gene            complement(1316..>2154)
                     /locus_tag="VHD88_05965"
     CDS             complement(1316..>2154)
                     /locus_tag="VHD88_05965"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HVS21375.1"
                     /translation="TDHNAWLKDYALAETEVVKWKSKDGTEVEGLLTKPVGYAAGAKV
                     PFLLNPHGGPTGASINNFSGTVQVLAANGFAVLQPNFRGSTGKGLAFAQANKNTWGKG
                     DYEDCMTGVDAMIANGIADPDRLGAFGWSYGGYMTFWILTQTDRFKAVSPGAGLTNIY
                     SMYSQNDIQRYLRWFYSDKSPWDAQELYWDRSPMKYVNNVKTPTMIMHGQVDTRVPIA
                     QAQEFYQALKERNVPVEFVVYPRENHSFTEPRHQMDRVRRYVRFFAKYLNAPVVTEPA
                     GQ"
BASE COUNT          447 a          661 c          599 g          447 t
ORIGIN      
        1 tctggctcgg ttcgcggcgg tgtaaaaatc gtaatccttc gccaactcga cgatggcgtt
       61 ggctaccaac tgtttcgtgg tcgggagcaa acgctcggcg cgccgcgcgc cggccacagc
      121 ggcggggtcg cccacggaca aagacggccg cgtctgcatc tcgtcgatcg gcacgctgcc
      181 aagcggatcg cgcacacgct cgtcacacgt cgcgccaatc gcgcgttcga ccaacaaacg
      241 atccgcagga gtgaaagact cgcgcgcggc aacggagtgg gcgccgttgc gccgctgtcg
      301 cgtctgtgcg tcggaagaac tggttgcgaa gtaaaaagcc gcgccgaaaa cggcaaggaa
      361 gaggatgaag gataaaggcg gaaggatgaa cgacgaacga tgaacgatga acttcagaga
      421 cccggaactc gctgagccgg ttttccgtct ctcttggttt ccgcgctttt gagtcagtga
      481 cttcatcgtt cagcgttcat ccttcagcgt tactcgttac ttatgccgcc actctggctt
      541 tcgcttttcc ataaacgccc gcacaccctc gtgcgcatct tcagttttca tcagctcgtg
      601 caggtagaga ttttcgacgt ccgccaacgc tgattcaaaa ccagttcgcc ctccgagatc
      661 aagtgcggcg cgcgtcatcg cgagcgacga cgccgaaact tcgcgcagct tcgccagcac
      721 gctttgcgtt gcttgctcga gttccgcgat gggcacaaca taattcacca ggccgagtcg
      781 caaggcttcg ctcgcgtcaa tcagatcacc ggtgagaatc agctcgcggg ctcgtttttc
      841 gccgatgatg cgcggcaaaa ggatcgccgc cacgggagga aaaacgccga gcttgatttc
      901 cggttggccg aagcgcgcgc gttcgctggc aatcacgatg tcgcacgcgg ccaccaactc
      961 gcagccaccg ccaagtgcgg gaccatcgac tactgcgatt gcgggctttg cgatctgcac
     1021 cagcgtgcga aaaatcgcat gaaaggagtc gagcatttga tagacggttt ctgtgccatg
     1081 ctcttcgacc gccacgccgg cgctgaaggc tcgtgtgtcc ggcgccgcag cgaaaactat
     1141 cgccgccaga tcgcgttgcg gcgcacactc gctcaacgcg gagccaatct cgcgaatcat
     1201 cgcgatgttg aagacgttga gcggaggccg cgcgaacgtg atccgcgcga cgcgatcgtc
     1261 gatggcgaac ttgatgctct gaaattcttt ggtcatggaa gcaatcaatg ccttctcact
     1321 gtcccgccgg ctccgtcacc accggagcgt tcaaatactt cgcgaaaaag cgaacataac
     1381 ggcgcacgcg atccatctgg tgacgcggct cagtgaagct gtggttctcg cgcggataca
     1441 cgacaaactc aaccggcaca ttgcgctcct tgagcgcctg ataaaactcc tgcgcttgcg
     1501 cgatcggaac gcgcgtgtcc acctgtccgt gcatgatcat cgtcggcgtc ttcacgttgt
     1561 tcacatactt catcggcgag cgatcccagt aaagctcctg cgcgtcccaa ggcgatttgt
     1621 ctgaatagaa ccagcgcaaa tacctttgta tgtcgttctg tgaatacatc gaatagatgt
     1681 tcgtcaggcc tgcgccgggc gaaaccgctt tgaaccgatc cgtctgcgtc agaatccaga
     1741 acgtcatgta accgccgtac gaccagccaa acgcgcccag gcgatccgga tcggcaatgc
     1801 cgttggcgat catcgcatcg acgccggtca tgcagtcttc gtaatcgcct ttgccccagg
     1861 tgttcttgtt tgcctgagcg aacgcgagac ccttgccggt cgatccgcga aaattcggtt
     1921 gcaacactgc gaagccattt gcggcaagca cctgcactgt gccgctgaag ttattaatcg
     1981 aagcgccggt cggccccccg tgcggattca gcaagaacgg cactttcgca cccgctgcgt
     2041 agccgacggg ctttgtcagc aagccttcga cctcagtgcc gtctttgctc ttccacttta
     2101 cgacttcggt ttcggccaaa gcataatctt tcagccacgc attatgatcg gtga
//
LOCUS       DASZZE010000306         2094 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_191418, whole genome shotgun sequence.
ACCESSION   DASZZE010000306 DASZZE010000000
VERSION     DASZZE010000306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2094)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2094)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2094
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_191418"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..744
                     /locus_tag="VHD88_05970"
     CDS             <1..744
                     /locus_tag="VHD88_05970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21376.1"
                     /translation="VAAVYFQQVELLAAALATEALYLAVVPATPFYRRLIAQREKARS
                     LKLRDAHREAVIKGFDPREREAVEYLRWMKNQIYSNYKKFTNSKEVPFNLQTLDKYWE
                     DFVDLLDVYRRRKHHLRSTNRQAVQNQLKQSLHAIETLTDERSKKVQQANAEILKRRV
                     AAFNDLERSVRLVEGQLQSIENFFGLVNDQVVTLPTPERVSALHFEELSDSIAMTRQM
                     LEETADTFGMLDHQTRELDFLLASGSASK"
     gene            complement(749..1603)
                     /locus_tag="VHD88_05975"
     CDS             complement(749..1603)
                     /locus_tag="VHD88_05975"
                     /inference="COORDINATES: protein motif:HMM:NF024376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate/phosphite/phosphonate ABC transporter
                     substrate-binding protein"
                     /protein_id="HVS21377.1"
                     /translation="MRRRPILFFILAVLFAGLFTNSASAQELKFGFTPVLSEPEMRAE
                     FEPLMNYLSDSIGQKVTLYIAKDYGDLRTQMESGAVDIGSFSPFAYVDAARGGKIRII
                     AQSIIEGSATYRGIIVARKDSGLKTIADLKGKRFAFVDPKSASGYVYPRAMLIEKGIN
                     PETFFKETIFAGSHDKVIAAVLDGRVDAGAIYDGALGVAQRSGVSTENLITLASSEPI
                     PHDAIAVRIGLDEALTRKIQLALINLDKSEAGRRVIAKSKKKLTGHVIAQDSLFDVVR
                     RTAKIAGL"
BASE COUNT          492 a          589 c          545 g          468 t
ORIGIN      
        1 gttgcggctg tgtactttca gcaggttgag cttcttgcgg ccgcgctcgc gactgaggcc
       61 ctttatctcg ccgtggttcc agcaactcct ttttatcgtc gtctgatcgc gcagcgcgag
      121 aaggcgcgct ccctgaagtt acgtgacgcg caccgtgaag ccgttatcaa aggattcgat
      181 ccgcgcgagc gcgaagctgt cgaatatttg cgctggatga agaatcagat ctattcgaac
      241 tacaaaaaat tcactaacag caaggaagtt cctttcaatc ttcaaaccct cgacaagtac
      301 tgggaagatt tcgtcgatct gctggacgtc tatcgccgtc gcaagcatca cttgcgttca
      361 actaatcgcc aggcggtgca gaatcaacta aagcaatccc tgcatgcgat cgaaactctt
      421 accgacgagc gatcgaagaa agtgcagcag gccaatgctg aaatcctcaa acgccgtgtg
      481 gcggctttca acgatttgga acgctcagtg cgcctggtcg aaggacaatt gcagtcgatc
      541 gaaaacttct ttggtctggt caacgatcaa gtcgtcacgc tgccgacgcc ggagcgcgtc
      601 tccgccttgc acttcgaaga actgagcgat tcaatcgcca tgacccggca gatgcttgaa
      661 gaaaccgcgg acacttttgg catgctcgac catcaaactc gcgaattgga tttccttctc
      721 gcgagcggct cggcgagcaa gtgaggagtc acaagccggc aatcttagcg gtgcggcgga
      781 caacgtcgaa cagactgtct tgcgcgatca cgtggcccgt caactttttc ttgcttttcg
      841 caatgacgcg ccgcccggct tcggatttgt ccagattgat cagggcaagc tgaatctttc
      901 ttgttaaagc ttcgtcgagc ccaatccgca ctgcgatcgc atcgtgagga atcggttcac
      961 tgctggcgag tgtgatcaga ttctcggtcg atacgcctga gcgctgcgcg actccgagtg
     1021 cgccatcgta aatcgcgccc gcgtcaactc gaccatcaag cacagcagcg atcactttgt
     1081 cgtggctgcc cgcgaagatg gtttctttga agaaggtttc cggattaatt cctttttcaa
     1141 tcaacatcgc gcgtggataa acgtaacccg aagccgactt cggatcgacg aaggcaaagc
     1201 gtttcccttt cagatcggcg atcgttttca gcccgctgtc cttgcgagcg acgatgatgc
     1261 cgcgataagt agccgagccc tcaatgatcg attgcgcgat gatccgaatc tttccgccgc
     1321 gcgctgcatc cacgtaagcg aacggagaaa agcttccgat atccactgcg cccgattcca
     1381 tctgcgtgcg caaatcgccg taatccttcg cgatgtagag cgtcaccttc tgcccgattg
     1441 aatcggaaag ataattcatg agcggctcaa actccgcccg catctcgggc tcgctaagaa
     1501 cgggagtgaa gccgaatttc agttcttggg cgctcgccga attcgtgaag agtcctgcga
     1561 acaggacagc gagaataaaa aacaagatag gacggcgacg catcatttaa ctccttctcg
     1621 aactaggtac cgagttagat cgatgcgcgg ccatccctgt cgacgaacca actctaaatg
     1681 atccccggag cgtgaaatgc tgacgtgctt atacaaccgc tccttactcg tcgtttcatt
     1741 cattccgtcg agccacgcta cgaactcggc atacggaatc agtagtagtc gctcctctga
     1801 accacagcca aatgctaggt aagactgctc ggcgccagcg agatattcgg cttggtgagg
     1861 atggaaagcg aaccaatacg agggagtccc actacggacg tgctcacgcg aaacagcaca
     1921 aatgactcga ataggttgat ccggagaagc gaacgtagct cgcgatcgct ttacaagagg
     1981 agtcttgaga accttctcaa gccgccgccg aacggcctcg tgaaaggcaa cgggcgtaaa
     2041 cttcggcttt cggtctgctt cagtgtcggc ctcatcttcc gagtctagct cggc
//
LOCUS       DASZZE010000307         1535 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_57112, whole genome shotgun sequence.
ACCESSION   DASZZE010000307 DASZZE010000000
VERSION     DASZZE010000307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1535)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1535)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1535
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57112"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..506)
                     /locus_tag="VHD88_05980"
     CDS             complement(<1..506)
                     /locus_tag="VHD88_05980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21378.1"
                     /translation="MSNYSFRLITKGHVLALLLLMSGISAVAQTPSPTPVNPATQPPG
                     QQVQPATAPPATQRPSSQSPPGSDVAPASQPTPMQEPREPNFPSVQQQPVPPLPDLTR
                     IGVMSSNMLTLSLNDAIRRALQNNNDIEVARDDVRYAEQQLRSLQGFYEPIFSMTPQI
                     IQNITPQQ"
     gene            777..>1535
                     /locus_tag="VHD88_05985"
     CDS             777..>1535
                     /locus_tag="VHD88_05985"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012274.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004365 - glyceraldehyde-3-phosphate
                     dehydrogenase (NAD+) (phosphorylating) activity [Evidence
                     IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0006006 - glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HVS21379.1"
                     /translation="MAVKVGINGFGRIGRNIFRTALGDKDIEFVAVNDITDTKTLAHL
                     LKYDSVLGNLHHAITTSENGITVEGKEFQVFSERDPASIPWDLVGAEIVIESTGRFTK
                     AEDAKKHLRGSVKKVIISAPAKNEDITIVLGVNEEKYDPRVHNVISNASCTTNCLAPV
                     AKVIHEKFVIRTAQMTTIHSYTNDQQLLDLPHSDLRRARAAGLSMIPTSTGAAKAVAL
                     VLPELKGKFDGISVRVPTPNVSLVDVVIDVERETT"
BASE COUNT          349 a          392 c          453 g          341 t
ORIGIN      
        1 ctctgctgcg gcgtgatgtt ctggatgatc tgtggggtca tgctgaagat cggctcgtaa
       61 aatccctgga gcgatcgcag ttgttgctcg gcatagcgca cgtcgtcgcg agccacttcg
      121 atatcgttgt tattttgcag cgcgcggcga atcgcgtcgt taagcgacaa cgtcaacatg
      181 ttgctgctca tcacgccgat gcgcgtcagg tccggcaacg gtggcaccgg ctgttgctga
      241 acactgggaa agttcggctc gcgaggctct tgcatcggag ttggctgcga agcaggcgcg
      301 acgtcgcttc ccggtggcga ctgcgacgaa ggccgttggg tagccggcgg cgcggtggcc
      361 ggttgaactt gttggcccgg cggttgggtc gccggattga ccggcgttgg actcggcgtt
      421 tgcgcaactg cgctaatgcc ggacatcaaa agcaaaagcg ccagcacgtg gcctttcgta
      481 atcagacgaa acgagtaatt cgacatcgaa ccgtactcct caaaagtgaa ctgggatttg
      541 cgaactggag cgtgtcgctt tgcgagcaga cagagagcgc caggtcattg cgtactacgt
      601 caattaactg taagcggttt caaaaagctt tgcaaaacgc gcgcttgaca ctgccgccaa
      661 gcgagcatta tcttgccttt tctttcaaag ctcagccgtc ctcagttatt gcctttcgca
      721 actgccgcgg ttaatgtgtt tgatcatcaa gaacatcgca ggaggtctga caaagaatgg
      781 cagttaaagt cggcatcaat gggtttggtc gaattggtcg caacatcttt cgcaccgcgt
      841 tgggcgacaa ggatatcgaa tttgttgcgg tgaatgacat caccgataca aagacgctgg
      901 cgcacctgtt gaaatacgat tccgttctcg gcaatctgca tcatgccatc actacttctg
      961 aaaatggaat cacggttgaa ggcaaagaat ttcaggtgtt ttcggaacgc gatccggcgt
     1021 caatcccgtg ggacctggtg ggggcggaaa ttgtgatcga atcgaccggg cgtttcacta
     1081 aagccgaaga tgcgaagaag cacctgcgcg gcagcgtcaa gaaggtaatc atctcggcgc
     1141 cggcaaagaa cgaagacatc acgatcgtgc tgggtgtgaa tgaagagaag tatgacccgc
     1201 gcgtgcataa cgtgatttcg aacgcgtcct gcacgacgaa ctgtttggcg ccggttgcga
     1261 aagtgattca tgaaaagttt gtcatccgca ccgcgcagat gaccacgatt cactcgtaca
     1321 caaacgatca gcagctactt gatctgccgc acagcgattt gcgccgcgca cgagccgccg
     1381 gactttcgat gattccgacc tcgaccggag cggcgaaagc tgtcgcgttg gtgctgcctg
     1441 aattgaaggg caaatttgac ggcatcagcg tgcgcgtgcc gaccccaaac gtttcgctgg
     1501 ttgacgtcgt gatcgatgtc gaaagggaaa cgaca
//
LOCUS       DASZZE010000308         5299 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_42223, whole genome shotgun sequence.
ACCESSION   DASZZE010000308 DASZZE010000000
VERSION     DASZZE010000308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5299)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5299)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5299
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42223"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            110..340
                     /locus_tag="VHD88_05990"
     CDS             110..340
                     /locus_tag="VHD88_05990"
                     /inference="COORDINATES: protein motif:HMM:TIGR02574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="addiction module protein"
                     /protein_id="HVS21380.1"
                     /translation="MGNGYEDVASAALALPPAARAMLAEDLVASLEASQEEIDEAWRI
                     EIERRVKEIKEGKVQLIPGEQVMSELRAQLEP"
     gene            337..477
                     /locus_tag="VHD88_05995"
     CDS             337..477
                     /locus_tag="VHD88_05995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21381.1"
                     /translation="MNYHYHPDAQREASAALAYYAAIGQQLGLNFLTELENAITRIVN
                     MP"
     gene            complement(711..1025)
                     /locus_tag="VHD88_06000"
                     /pseudo
     CDS             complement(711..1025)
                     /locus_tag="VHD88_06000"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
     gene            complement(1134..2078)
                     /locus_tag="VHD88_06005"
     CDS             complement(1134..2078)
                     /locus_tag="VHD88_06005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21382.1"
                     /translation="MLKRAFAFSAAFIVTASTVQFAQTRQQPVAPRYQMPPKEIVEAF
                     DAPLLPTAILSPSKQVIALVYRKNYPTISELFAADTSSGRIAYQSEDERAAAHSQCFC
                     DHAVPPQANLSNVRFSPDGSRLSFLNTKENGIELWIADAATGKAKMVSGTDRLNATTG
                     DPCDWLHDNVTLICELVPTGRGPAPAEPSVPMGPNIIEDYGKAAPAATYEDMIKTWSC
                     GPTRVNSATPTQPVRSPDRRTASRPSADTRICFCCCPATRFSITPRCRSSARAKPPTI
                     ITLSNWWTTPRPRSTKWLRWVWAIATASVSVDTAMARS"
     gene            2219..3481
                     /locus_tag="VHD88_06010"
     CDS             2219..3481
                     /locus_tag="VHD88_06010"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HVS21383.1"
                     /translation="MRLALLFLACFILAYPFTQTPSAQTQSPAPKPPDAVYLLKPAHV
                     FDGESAQLHDGWVVLVRGERIEAVRPVKDVAVPGEAKVIELPGMTLMPGLIDAHSHVL
                     LHPYSETIWNDQVAREASSLRVARATNHLRSTLMAGFTTIRDLGTEGAGYADVGLKQA
                     VQQGIIPGPRMFVATRAIVATGSYGPKGYAPEWTVPQGAEEADGIDGLTRVVREQIGK
                     GADWVKVYADYRWGAAGTAHATFTLEELKLAVDVAKSAAIPVSAHATSTEGARRAILA
                     GVETIEHGDGLTPELFRLMKERGTALCPTISIAGANAEKKKVVFKQALEAGVTIASGS
                     DVGVFAHGDNAREIETMVNWGMPIVDALRSATSINARVLHMADKIGAVKVGLFADLIA
                     VEGDPTHDISSLRRVRFVMKGGAIYKQP"
     gene            complement(3569..4444)
                     /locus_tag="VHD88_06015"
     CDS             complement(3569..4444)
                     /locus_tag="VHD88_06015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21384.1"
                     /translation="MRATRLYSVFVILISLCLGSFQSLTAQQPAKLASDGRISGAYAR
                     GASPALAGSDSSGIREVIDEKYKKRYQEWKDEFLSTEIGRAQWDLYSHNPHLVLTITV
                     AKGNTHGAGSGKYTWDDSGQLTAATITLGTRIDEGFPSSVYYPVMSALEMYESEKLLN
                     PNVLAATKLAHEFGHVTKMNSTAEAAYRLQVRLVPAYNKIFLSNGHNVNDPRLVEMAQ
                     QMGGNPVDLWADREYWGEANAMLYLRDRVAKESFHCKLFNKIKRSVEEYAKNYEERFT
                     EIAKSQGVTYACSWK"
     gene            complement(4559..4632)
                     /locus_tag="VHD88_06020"
     tRNA            complement(4559..4632)
                     /locus_tag="VHD88_06020"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4598..4600),aa:Gln,seq:ctg)
     gene            4884..5186
                     /locus_tag="VHD88_06025"
     CDS             4884..5186
                     /locus_tag="VHD88_06025"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HVS21385.1"
                     /translation="MSEQQTSSDSNELARLRALVAEYEAKTTDAAALVARVRHEINNP
                     LAGLLGQAQLLLREELNDKSRTRVETIEKLAIRIKEIVGDLRDVQTPVAAINRAEE"
BASE COUNT         1178 a         1447 c         1536 g         1138 t
ORIGIN      
        1 cgttagcctc gggtgaagaa gcgcaagcgc gagaggcggt cggagcgtcg cagttgtagc
       61 tttacacatt gaacagtgga cgcccgaacc ttttcattag gaggacgata tgggtaacgg
      121 atatgaagac gtagccagtg cggccttagc cctgccgcct gcggctcgtg cgatgctggc
      181 ggaagacttg gtggcgagtc tggaggcctc acaggaagag attgatgagg cgtggcgaat
      241 cgaaatcgag cggcgcgtca aagagatcaa ggaaggcaag gttcaattga ttcccggtga
      301 acaggtaatg agtgagttgc gcgcccaact ggaaccgtga attaccatta tcatcccgat
      361 gcgcaaagag aagcctcagc cgctctcgct tactacgccg ccatcggtca gcaacttggc
      421 ctcaactttc taactgaatt agaaaacgcc attactcgga tcgtgaacat gccctaagct
      481 tggacccaac acattgcagg taccagacga tgccttttgc aacgattccc gtatggagta
      541 atctacgaaa ccgaatccga ggccattcac ataatcgctg ttatgcatct tcatcgtaaa
      601 cctgcctatt ggctaaatcg gatcccaacc aagtaatttt tctaacgcga agacgggcgc
      661 tacctcgtgg cgcgacctac aggttttgca ggctctcaca actggatcgc tcacgggatg
      721 attctgcgga cgtcgtctct tcccggcgcg gcgttcttca catacttatc aaaccagtta
      781 attcgctcgg cgaggatatg caaaagcgtt tcgcgccccg cgtacccgtg cgcttcgaac
      841 ggcaacgtct cgtaacgaac ggtcgcgccg aatcccttca gcgccatata aaaccgctcc
      901 gactgaatcg gaaacgtgcc tgagttgtcg tccgcttcgc cgtgcatcag caggatcgga
      961 tccttgatct gattcgcgta ccagaacggc gacatcttcg cgtagagatc cggcacttcc
     1021 cagaaagttc gccgctcgct ctgaaagccg aacggagtga gcgaacgatt gtaagcgccg
     1081 ctttcggcaa aagcccgctc ggaacaaacg cgagtgcgcc agcaagttcg ccgtcatgaa
     1141 cgcgccatag ctgtgtccac cgacaccgat gcggtcgcga tcgcccacac ccatctcaac
     1201 cactttgtcg atcgcggcct gggcgtcgtc caccaattgc tcaacgtaat gatcgttggc
     1261 ggtttcgccc gggccgatga tcggcatcgt ggggttatcg aaaatcgcgt agccggacaa
     1321 cagcagaaac agatgcgagt atccgctgac ggtcgtgaag cggttcggcg atccggtgat
     1381 ctgactggct gagtcggggt cgccgaattc acgcgggtag gcccacatga ccacgtcttg
     1441 atcatgtctt cgtacgtagc tgcgggcgcg gccttgccgt agtcctcgat gatgttggga
     1501 cccatgggca cagacggttc tgccggcgct ggtccacgcc cggtgggcac aagttcgcag
     1561 atgagcgtca cgttgtcgtg cagccagtcg cagggatcgc cggtggttgc gttaaggcga
     1621 tccgttccgc tcaccatctt cgccttgccg gtcgcggcat ctgcaatcca caactcgatg
     1681 ccgttctcct tcgtgttcag aaacgagagg cgcgatccgt cgggtgagaa gcgcacatta
     1741 gataaattcg cttgtggcgg cacggcgtga tcgcaaaaac attggctgtg cgctgcggcc
     1801 cgttcgtctt cggattgata cgcaatccgg ccagacgaag tatcggctgc gaaaagttcc
     1861 gagatcgtcg gatagttctt gcgataaacg agcgcgatga cttgcttcga agggctgagg
     1921 atcgccgtcg gcaacagcgg cgcatcaaac gcttcgacga tttctttcgg cggcatttga
     1981 tagcgcggcg ctaccggctg ctggcgcgtc tgcgcaaatt gaaccgttga cgcggtgacg
     2041 atgaacgcgg cggaaaaagc aaacgctctc tttagcatgg gggaaacctc ctgcggtggc
     2101 ccttcttttt tgcgaggccg gattctatca gaaggcgaag cgttgggcta cgaaaagctc
     2161 gacctccgct gctatactca cgccgctttt cagttcgagg tcttgaaagg atcgtgatat
     2221 gcgtcttgca ctcctgttcc ttgcgtgctt cattcttgct tatccattca ctcaaactcc
     2281 atccgctcaa acacaatcgc ctgctccgaa accacccgac gcagtttatc tacttaagcc
     2341 ggcgcacgtc ttcgatggtg agtcggcgca gttgcacgat ggctgggtgg ttttggtgcg
     2401 cggcgaaagg attgaagcag tcaggccggt gaaggacgtc gcagttccag gcgaggcgaa
     2461 ggtgattgag ttgcccggaa tgactctgat gcccgggttg attgatgcgc actcgcacgt
     2521 gctgctgcac ccgtacagcg aaaccatttg gaatgatcag gtggcgcgcg aagcgtcgag
     2581 tcttcgcgtc gcgcgcgcga cgaatcattt gcggagcacc ctgatggctg gcttcacgac
     2641 gattcgcgat ctcggcacgg aaggcgcggg ctacgcggac gtcggattga agcaagcggt
     2701 gcagcagggg atcattcccg ggccgcgcat gtttgtcgcg acgcgcgcga tcgtggcgac
     2761 gggaagttat ggcccgaagg gttacgcgcc agagtggacg gtgccgcagg gcgcggaaga
     2821 ggccgatggc atcgatggtt tgacgcgggt ggtgcgcgaa caaatcggca agggcgccga
     2881 ttgggtcaag gtctatgctg attatcgctg gggcgcggcc ggcacggcgc acgcgacgtt
     2941 tacgttggaa gagttgaagc tcgcagtcga cgtcgcaaag agcgcggcta ttcccgtatc
     3001 agcacacgca acaagtacgg aaggggcgcg ccgcgcgatt ctcgccgggg tcgaaacgat
     3061 cgagcatggt gacggtctca cgccggaact ctttcgcttg atgaaagagc gcggcacggc
     3121 tctctgtccg acgatctcaa ttgccggcgc gaatgcagaa aagaagaaag ttgtcttcaa
     3181 acaagcgctc gaagcaggcg tgacgattgc cagcggcagc gacgtcggcg tgttcgcgca
     3241 cggcgacaac gcgcgcgaga tcgaaacgat ggtgaactgg ggaatgccaa tcgtcgacgc
     3301 attgcgatca gcaacttcga tcaacgcgcg ggtgctgcac atggcggaca agattggagc
     3361 agtgaaggtt ggattgtttg ctgatctgat cgccgtcgaa ggcgatccta ctcacgacat
     3421 ttcgtcgttg cgtcgggtca ggtttgtgat gaaaggtgga gcaatctaca agcagccgtg
     3481 atgttctctg tgctctctga agtaaatcgt cgtgcggcga ttgccttaac cgcggaggac
     3541 acagaggaac acagagactt aagccaaact atttccaact gcaagcgtaa gtcacgcctt
     3601 gcgatttcgc gatttcggta aaacgctcct catagttctt cgcgtactcc tcgacagacc
     3661 gcttgatttt attgaagagc ttgcagtgaa agctttcttt ggcaactctg tcgcggagat
     3721 agagcattgc gtttgcttct ccccagtatt cacgatccgc ccaaaggtcc accggattgc
     3781 cacccatctg ttgcgccatt tcgactaacc gcggatcgtt aacgttgtga ccgttgctga
     3841 ggaagatttt gttgtaggcc ggcaccaatc gaacttgaag acgataggcc gcttcagccg
     3901 tgctgttcat cttcgtgaca tggccgaact cgtgcgccag ttttgttgcc gcgagaacat
     3961 tcgggttgag cagtttttct gattcataca tttccagcgc actcatcacc ggataataga
     4021 cagagctggg aaacccttcg tcgattcggg tgcccaaagt gatagtcgcc gcggtgagtt
     4081 ggcctgagtc gtcccaggtg tacttgcctg acccggcccc atgggtattc cccttcgcca
     4141 ccgtaatggt caagacgagg tgcggattgt gcgaatacaa atcccattgc gcccgcccga
     4201 tttcggtcga gagaaactcg tccttccact cctgatagcg cttcttatat ttctcatcga
     4261 tcacttcgcg aataccgctg ctgtcagaac ccgccagcgc cggagacgcg ccacgcgcgt
     4321 aagcgcctga aattcgcccg tctgacgcca gctttgcggg ttgttgcgcg gtgagactct
     4381 gaaaagatcc taaacacagt gagatgagga tcacgaagac ggaataaagt cgggtcgctc
     4441 tcattgacga aggcctcctt gcgaatagtt ggtcaggccg cttggcccgc ctggggatat
     4501 tcacttctaa atcatcctcc gcgacatgtc aatgaatatt cggcggaaat taggacaatg
     4561 gctgggaggc agggactcga accccgatag ccagatccag agtctggagt cctaccattg
     4621 gacgacctcc cagcagggaa ctcgaattta cgtaagtcgg acgacgaatg tcaaccgcga
     4681 cactgatagt tctcttcaca caactttgcc gcgcgagatt cctgctaggc gaggttagaa
     4741 tcccgtgcgc gactcgaaaa aaatacttct tgcacttgcg gcttaaatga aagcaaaata
     4801 ggcgcgcctg gcgggaacgc acacacgcct gcccggcaac ttcacgttag cgctcttatt
     4861 acgaatcgaa agcttaggag ccaatgagcg aacaacaaac gtcatccgac tcgaatgaat
     4921 tggcgcgcct gcgtgcgctg gtcgccgagt acgaagctaa aacgaccgac gcagcggcgt
     4981 tagttgctcg cgtgagacac gaaattaata atccgctcgc gggtctgttg ggccaggcgc
     5041 aacttctgtt gcgtgaagag ctgaacgaca agtcgcgcac gcgcgtggaa acgatcgaaa
     5101 aactggccat tagaatcaaa gaaatcgtag gagatttgcg ggacgttcaa acgccggtcg
     5161 cagcgataaa tcgggccgag gagtagtgct cggctctttc caaaccgcaa gcgatttcgc
     5221 cgcgtatggt ttcgcctaag ccagatcgaa aagcagaact tccgccgagt catgggcagt
     5281 aaggttgaga gtctcctcg
//
LOCUS       DASZZE010000309         2027 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_28270, whole genome shotgun sequence.
ACCESSION   DASZZE010000309 DASZZE010000000
VERSION     DASZZE010000309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2027)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2027)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2027
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28270"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1488)
                     /gene="topA"
                     /locus_tag="VHD88_06030"
     CDS             complement(<1..1488)
                     /gene="topA"
                     /locus_tag="VHD88_06030"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003917 - DNA topoisomerase type I (single
                     strand cut, ATP-independent) activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HVS21386.1"
                     /translation="MAKNLVIVESPAKAKTINKYLGKDYLVKASIGHIKDLPSKKLGV
                     DIEHDFEPTYEVIPDTRKRNNKRIVAELKKAAKEADAIYLAADPDREGEAICQHLAEE
                     IVPKKPAKPTFRVMFNEITKRAVNAAFDHPKQIDTNMVDAQQARRVLDRLVGYQVSPL
                     LCRAIGGRLSAGRVQSAALRMVVEREREILAFIRTEYWTITANLAASLPPAFDARLFK
                     VGDQTVKTGGFDDDLKKNEILIRDEATATDIVGEAEKQTFVVSEVATKERKRNPVPPF
                     ITSKLQQEAARKLGFAVKRTMMIAQKLYEGIELGAEGSVGLITYMRTDSTRVSDAALG
                     EARDFINTQYGPPYLPEKAIHYRSKKDAQDAHEAIRPTDVTRTPDSLAQYLGKDELRL
                     YRLIWQRFVASQMTPALFDQTTIDIQAGRFIFRATGSVQKFDGFLKLYQEGRDEKTED
                     EEEAERSLPRVSQGETLELKKIAPEQHFTEPPPRFTEATLVKALEE"
     gene            complement(1489..1857)
                     /locus_tag="VHD88_06035"
     CDS             complement(1489..1857)
                     /locus_tag="VHD88_06035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21387.1"
                     /translation="MYHPELAGGRWFTLSIAEQLGNVGSEYERALSCKERHDAERFQH
                     AFARLMELLDLTIADPRWQNHRLKELTLLKEFIRDELCNEVREYPDQRDLREYFLSFA
                     LLANKERAAARNRQSAIGTE"
BASE COUNT          396 a          585 c          553 g          493 t
ORIGIN      
        1 ctcttcgaga gccttgacga gagtagcttc agtaaagcgt ggcggtggct cggtgaaatg
       61 ttgctcgggc gcaatcttct tcagctcgag cgtctcgccc tggctcacgc ggggcagtga
      121 acgttcggct tcctcttcgt cttccgtctt ctcgtcacga ccttcctgat aaagtttgag
      181 aaagccgtca aacttctgca ccgatccggt cgcgcgaaag atgaagcgcc ccgcttgtat
      241 gtcgatagtg gtctgatcaa agagcgccgg cgtcatctgc gaagcaacga agcgctgcca
      301 gatcagccgg taaagtctca actcgtcttt gcctaaatat tgcgccagcg agtcaggcgt
      361 gcgcgtgacg tcggtgggcc ggatggcctc gtgcgcatcc tgcgcgtctt tcttggagcg
      421 atagtggatc gctttttccg gcaagtaagg cggaccgtac tgcgtgttga tgaagtcgcg
      481 cgcctcgcct aacgccgcgt cggacacgcg cgtcgaatcc gtacgcatgt aggtaatcag
      541 acctactgaa ccttcggcgc ccagctcaat gccttcgtaa agtttctgcg cgatcatcat
      601 cgtccttttg acggcaaagc cgagcttgcg cgccgcttcc tgctgtagtt tggaagtgat
      661 gaaaggcgga accggattgc gcttgcgctc tttggttgcg acttcgctga ccacgaatgt
      721 ttgcttttcg gcttcgccga cgatatcagt ggcagttgcc tcatcgcgga tcaggatctc
      781 gttctttttc agatcgtcat caaacccgcc ggtctttacc gtctgatcgc cgaccttgaa
      841 aagccgcgcg tcaaaggcag gtggcaaact agcagcgaga ttggcggtga tggtccagta
      901 ctcggtcctg atgaacgcca ggatctcgcg ctcgcgttcg accaccatgc gcagcgcggc
      961 cgattgcacg cggccggcgc tcaggcggcc gccgatcgcg cggcacagca gcggcgagac
     1021 ctggtaacct accagtcgat caagcactcg gcgcgcttgc tgagcatcga ccatgttggt
     1081 atcgatctgc ttgggatgat cgaaggcggc gttgacggca cgtttggtaa tctcgttgaa
     1141 catcacgcga aaggtcggtt tcgcaggttt cttgggaaca atctcttcgg ccagatgctg
     1201 gcaaatagct tcgccctcgc ggtccgggtc agcggcgaga taaatagcgt cggcttcctt
     1261 tgccgccttc ttcaattccg cgacgatccg tttgttgttg cgcttcctgg tgtcgggaat
     1321 aacttcgtag gtcggttcga agtcgtgctc aatgtctaca cccagtttct ttgaaggcag
     1381 atccttgatg tggccaatcg aggctttgac cagatagtct ttccccaaat atttattgat
     1441 cgtctttgcc ttcgcgggcg attcaacgat gactaagttt tttgccattt attcagttcc
     1501 gattgccgat tgccgatttc ttgcggcggc gcgctccttg tttgctaata atgcaaacga
     1561 aagaaagtac tctctcaaat cgcgctggtc tggatactcg cgaacttcgt tgcagagttc
     1621 gtcgcgaatg aattctttca aaagggtcaa ctccttaagc cgatgattct gccagcgagg
     1681 atcggcgatc gtaagatcca gtaactccat caacctcgcg aacgcgtgct ggaaacgctc
     1741 cgcgtcatgt cgctccttgc aactcagcgc gcgctcgtat tcactaccca cgtttcccag
     1801 ttgttcggcg atcgacagtg tgaaccaacg accgcctgcc agctcaggat ggtacatccg
     1861 cttcggcccc ttcatatctt ccgcacaaaa catctgcccg gcagcgcgcg caccaactcg
     1921 cgcatctcca acgctaacag cgccgcggtc aaatccgaaa tcgaaagctt cgtcctatca
     1981 agcagcgcgt cgatatgcgc ggggtcgtcc gccgacagaa gcttgag
//
LOCUS       DASZZE010000310         1746 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_8922, whole genome shotgun sequence.
ACCESSION   DASZZE010000310 DASZZE010000000
VERSION     DASZZE010000310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1746)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1746)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1746
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8922"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(77..1090)
                     /locus_tag="VHD88_06040"
     CDS             complement(77..1090)
                     /locus_tag="VHD88_06040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21388.1"
                     /translation="MSLWATLLETAIHSPSPHNVQPWRVRIHNDRKADLLIDSARTLP
                     KEDPTASFIILTMGMFIEALSLLAANRKYRLEYDLFHEPAWYAGAILDAREQTFLPFA
                     RLRLVPDDGLPSTDYDPAVFLKRRTSRISLLPRPVPHEAAQALKRLAAEWNHRHEQIT
                     DTSAIERILDRNTEALFEDLNSPDYHDEITSWFRFTDRASRRHRDGLDYRCMNTSRST
                     YWLTARFPKLLLLPGARSLLSRTYRAQLGPVPTIGLLAGDFWQPESAIKTGRFLMRFW
                     LETARRNLYIHPYGNMVTNKKAAQWLRAETKVPDIWLVFKIGYSAEPPKSHRRPVEDI
                     LLD"
     gene            1283..>1746
                     /locus_tag="VHD88_06045"
     CDS             1283..>1746
                     /locus_tag="VHD88_06045"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HVS21389.1"
                     /translation="MALRLGDIAPDFTAETTEGPISFHEWIGNNWACLFSHPKDFTPV
                     CTTELGEASRLKPEFEKRNVKVIGLSVDQTDSHKRWAEDIRETQGTALNFPVIADPDH
                     KVAELYDMIHTEVSDVFTVRSVFIVGPDKKVKLMITYPASTGRNFDEILRVI"
BASE COUNT          409 a          466 c          504 g          367 t
ORIGIN      
        1 ataagtgcgc cgatcgatgc tgatgaactg atgcaccaac cagagcatcc agagcgtcat
       61 ttgaatgact attcgatcaa tcaagtagta tgtcctctac gggacggcga tggctcttcg
      121 gcggctccgc ggagtagccg atcttaaata ccagccagat gtcgggtact ttcgtttccg
      181 cgcgcagcca ctgcgcagct ttcttgttcg ttaccatatt gccgtacgga tggatgtaga
      241 gattgcgccg cgcagtctcg agccagaagc gcatcagaaa acggccggtc ttgattgcgc
      301 tttcgggttg ccagaaatcc ccggccaaca gcccgattgt tggcaccggg ccaagctgcg
      361 cccggtacgt tctcgacagt aaagaacgcg cccctggcag cagaagcagt ttcggaaagc
      421 gcgccgtcaa ccagtaggtc gagcgcgaag tattcatgca ccgatagtcg agtccgtcgc
      481 ggtgccggcg cgacgcgcga tcggtgaacc gaaaccacga agtgatttcg tcgtgatagt
      541 cgggactgtt gagatcttca aatagcgctt cagtatttcg atcgaggatc cgctcgatag
      601 cagacgtatc ggtaatttgt tcgtgtcgat ggttccattc ggcagccagc cttttcagag
      661 cctgcgcggc ctcgtgcggc acagggcggg gcaacagcga aatgcgcgac gtgcgacgct
      721 ttaaaaaaac ggccgggtcg taatcagtgc tcggcaatcc gtcgtcaggt acgagccgca
      781 accgcgcaaa tggcagaaaa gtttgctcac gcgcatcaag gatcgccccg gcataccacg
      841 ccggctcgtg aaaaagatcg tactcgagcc tgtatttgcg gtttgctgcc agcagtgaga
      901 gcgcttcgat gaacatgccc atcgtgagaa tgatgaaact cgcggttgga tcctcctttg
      961 gcagcgtacg cgccgaatcg atcagcagat cagccttacg gtcattgtgg atgcgaacgc
     1021 gccagggttg gacgttgtgc ggagatggtg agtggatcgc tgtctcaagc agtgtcgccc
     1081 agagactcat cgcgcttatt gtagcgcaag ccgttagctt gcgcgcaaac tagcagtttg
     1141 cgttacagcc tccgaccttg acttcgcgac atgaagtggc atacaaagtc ggcagtcaaa
     1201 atcacatttt ggtgaatgct gacactacct cgctgggggt gtagtgtcca aatcaatttt
     1261 tggagcaaaa ggagtacaaa ccatggcatt acgtttaggc gacatagcgc cggatttcac
     1321 ggcggaaacc accgaagggc cgattagctt tcacgagtgg attggcaaca actgggcgtg
     1381 tctgttttcg cacccgaagg atttcacacc ggtgtgcacg accgagctgg gggaagcctc
     1441 gcggctcaaa cccgaattcg aaaaacgcaa cgtcaaagtg atcggcctga gcgtcgatca
     1501 gaccgactcg cacaaacgct gggccgaaga cattcgcgag acgcagggaa cggcgctcaa
     1561 ctttccggtg atcgccgatc cggatcacaa agtcgcagag ctttacgaca tgatccatac
     1621 cgaggttagc gacgtcttca cggtgcgctc agtgttcatc gtcggcccgg acaagaaagt
     1681 gaaactgatg atcacttatc cggcgagcac gggaagaaac tttgacgaga ttctgcgcgt
     1741 gatcga
//
LOCUS       DASZZE010000311         5221 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_28405, whole genome shotgun sequence.
ACCESSION   DASZZE010000311 DASZZE010000000
VERSION     DASZZE010000311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5221)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5221)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5221
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28405"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..333
                     /gene="atpH"
                     /locus_tag="VHD88_06050"
     CDS             <1..333
                     /gene="atpH"
                     /locus_tag="VHD88_06050"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF012439.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F1 subunit delta"
                     /protein_id="HVS21390.1"
                     /translation="RQTTVNFLKVLLQNQRLTELGEINRKFAEVLDDRAGMVAATVTT
                     ARTVPESSQQELHAKLTSLTSKKVRVDFETDPELIGGIVTRIGSTVYDGSVRNQLQMI
                     RQRMAGEA"
     gene            444..1976
                     /gene="atpA"
                     /locus_tag="VHD88_06055"
     CDS             444..1976
                     /gene="atpA"
                     /locus_tag="VHD88_06055"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF009884.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HVS21391.1"
                     /translation="MEPIKANEINEIIRQQIENFEAGVTVSEVGTVIKVGDGIAEIHG
                     LEKVMAGELLEFPHDVRGLALNLEEDKVGAVLFGDFQKIKEGDLVKRTGRIMQVPVGQ
                     ALVGRVMDALGNPIDDRGPILTDEYNAVERIAPGVVDRQPVKEPLQTGLKAIDSMVPI
                     GRGQRELIIGDRQTGKTAVAVDTIINQRGKDVICIYVAIGQKASTVAQVVKTLQDFDA
                     MSYTIVVKATASDPAAMQFLAPYSGAAMGEYFRDRGQHALTIYDDLSKQAAAYREISL
                     LLRRPPGREAYPGDVFYLHSRLLERAAKLSDAKGGGSLTSLPVIETQAGDISAYIPTN
                     VISITDGQIFLEGDLFNAGIRPAINVGNSVSRVGGAAQIKAMKQVAGSLRLDLAQYRE
                     LAAFAQFGSDLDKATQAQLARGQRLTEILKQPQYVPMDVEKQVLIIWAAINGFTDDVA
                     VEALRKFETDLLRFIENSHPAVLQNLREKKAITDEIQKDLEQSLKDFKDRWAEEARAA
                     AA"
     gene            2052..2933
                     /gene="atpG"
                     /locus_tag="VHD88_06060"
     CDS             2052..2933
                     /gene="atpG"
                     /locus_tag="VHD88_06060"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F1 subunit gamma"
                     /protein_id="HVS21392.1"
                     /translation="MANLLDIRRRIKSVKNTQQITKAMKMVSAAKLKRASDRVVNARP
                     FANKMSDVLGELAGRTTDFHHPLLDARGDQRYLLVLITADKGLCGAFNTNLLKAAQNF
                     VKEHTDKSIDLLAIGRKGRDFFRRRRAEIVGEYVGLTGKGRVEFSEVLDVAHDVIKRF
                     TEDEELDKVFLIFNEFKSVLTQRVVIEQLLPISRSAESDAGDTAQPAELKEYIYEQAP
                     AEIFSRLLPRLVETKIFRALLESIASEQGARMTAMDAASKNAGDLISSLTLNMNRVRQ
                     AAITREIIEIVSGAAAL"
     gene            3195..3680
                     /locus_tag="VHD88_06065"
     CDS             3195..3680
                     /locus_tag="VHD88_06065"
                     /inference="COORDINATES: protein motif:HMM:NF016763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HVS21393.1"
                     /translation="MSTAIKASEPSYLTPPHHRLSRYGPLVLWAALIFVGSTSLLSGS
                     HTSALVRPVLWLFPHASEATLALIHFIVRKCGHLTEYAILALLATRAFKTSSHDFLRD
                     HWFVASLLLVIVYSLSDEFHQSFVPSRTASIYDSMIDSFGGLAALVVYGLRQRKTRHN
                     R"
     gene            complement(3689..5023)
                     /locus_tag="VHD88_06070"
     CDS             complement(3689..5023)
                     /locus_tag="VHD88_06070"
                     /inference="COORDINATES: protein motif:HMM:NF021205.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartyl protease family protein"
                     /protein_id="HVS21394.1"
                     /translation="MFKGPKSQPGPRQIFSKEFIIKTMIKAHAGSIRKASTVRLRAFA
                     IAILLVASNIALPGKNSAGEPPTNVQFVTGHSALNIPFEFEYNEIVLQVRVNNSAPLK
                     FMFDTGAGASILNARQAAWLNLKQVDSVKATGVGGNVQGSLATGVSLSVPGVKVLNQR
                     LVLLPLDFPFCEASDIDGIIGYDFIKEFVVEINYDARTLSLLDPLSYRYTGRGDMLPL
                     TIKGTPRVHALIALPGKPPIEGLFEIDTGSDGALTINSPFVNRHQLLSALSTQVSNSE
                     RGLGGESKRFDARLGNMQLGRFKINAPIVGFSTAAKGSMAAEDNDGPIGNEIMRRFKV
                     VIDYSRQRMMLEPNAHLSDPFETDMSGIDFDSEGKDCRVFKVTDVAEKSPAAEAGILS
                     GDEIVAINDKPANQFTSTEIEKLLMQDGAEHSLTLRRANNILVVKIKLRRLV"
BASE COUNT         1182 a         1414 c         1486 g         1139 t
ORIGIN      
        1 aggcaaacga cggtcaactt tctgaaagtc ctcttgcaga atcagcgcct gacggaactt
       61 ggcgaaatca atcgtaagtt tgcggaagtg ctcgacgatc gcgccggaat ggttgcggcg
      121 accgtgacta ctgcgcggac cgttcctgaa agttcgcagc aagagttgca cgcgaagctt
      181 acttcattga caagcaagaa ggtgcgcgtg gacttcgaaa ctgatccgga attgatcggc
      241 ggcatcgtga cgcgcatcgg ctcaaccgtg tacgacggct cagtgcgcaa tcagttgcaa
      301 atgattcgac aacgaatggc aggggaagcg taaaaaagga gtcagaagtc aggagccaga
      361 attcagaata aggcaaagtc gtctttgatt ttcttctgac tcctggattc tgactcctga
      421 cttcaaacct tggaatggaa atcatggagc ctataaaagc aaacgaaatc aacgaaatca
      481 ttcgccagca gatcgagaat tttgaagccg gcgtcaccgt tagcgaggta ggcaccgtga
      541 tcaaggtcgg tgatggcatc gccgagattc acggcctcga gaaagtaatg gccggcgagc
      601 tgctcgagtt tccgcacgat gtgcgcgggc tggcactcaa tctggaagaa gacaaagtgg
      661 gcgccgtgct cttcggcgac tttcagaaga tcaaagaagg cgatctggtg aagcgcacgg
      721 gccgcatcat gcaggtgccg gtgggtcagg cgctggtggg ccgcgtgatg gacgcgctcg
      781 gcaacccgat tgacgatcgc ggaccgatcc tgaccgatga gtacaacgcg gtcgagcgga
      841 tcgctcccgg agtggtcgat cgacagccgg taaaagagcc tttgcaaacc ggtctgaaag
      901 cgatcgactc gatggtgccg attgggcgcg gccagcgtga attgatcatt ggcgaccgtc
      961 aaacgggcaa gacagcggtc gcggtcgata cgatcatcaa tcagcgtggc aaggacgtca
     1021 tttgtattta tgtagcgatc ggccaaaagg cttcgacggt cgcgcaggtc gtcaagacgc
     1081 tgcaggattt tgacgcaatg agttacacga tcgtcgtgaa agccaccgca tccgatcctg
     1141 cggcgatgca gtttcttgcg ccttattcag gcgcggcgat gggagagtac ttccgcgatc
     1201 gcggtcaaca tgcactgaca atctacgacg atctttcgaa gcaggcggcc gcgtatcgcg
     1261 agatttcctt gttgctgcgg cgcccgcccg gacgcgaagc ttaccccggc gatgtcttct
     1321 atctgcactc gcgtttgctg gagcgcgcgg cgaaactctc cgacgcgaag ggcggtggct
     1381 cgctgaccag tctgccggtg atcgaaacac aagcgggcga catttccgct tacattccga
     1441 cgaacgtgat ttcgatcacg gacgggcaaa tctttctgga gggcgatcta tttaacgcgg
     1501 gcattcgtcc cgcgatcaac gtcggcaact cggtttcgcg cgtcggcggc gcggcacaga
     1561 tcaaagcgat gaagcaagtt gcaggcagtc ttcgtctcga tctcgcccag tatcgtgaac
     1621 tcgccgcttt cgcgcagttc ggatcggatc tcgataaagc tacacaggcg cagctcgcgc
     1681 gcgggcagcg tctcaccgag attctgaaac agccacaata cgtgccgatg gatgtcgaga
     1741 agcaagtgct gatcatttgg gcggcaatca atggtttcac ggatgacgtt gctgttgaag
     1801 cgctgcgcaa attcgaaact gacctactgc gcttcatcga aaactcgcac ccggctgtct
     1861 tgcaaaacct gcgcgagaag aaagcgatca ctgacgagat tcagaaggat ctcgaacagt
     1921 cgctgaagga tttcaaggat cgttgggcgg aagaagcacg agccgcagcg gcatgattgt
     1981 aggggcgggg ctcgtccccg cccgaaccct ggattggagg gcagggacaa gccctgcccc
     2041 tacaatttcg aatggcaaat cttctcgaca ttcgccggcg cattaagtcg gtcaagaaca
     2101 cgcagcagat caccaaagcg atgaagatgg tgtcggcggc gaagttgaag cgcgcgtcgg
     2161 atcgcgtcgt caacgcgcgg ccgtttgcca acaagatgag cgacgtgctg ggcgaattgg
     2221 ccggtcggac aaccgacttt caccatccat tgctcgatgc tcgtggcgat cagcgttacc
     2281 tgctggtgct gatcaccgcc gacaaaggcc tgtgcggcgc gttcaatacc aatctgctga
     2341 aagccgcgca gaatttcgtc aaggaacaca cggacaagtc gatcgatttg ctggccatcg
     2401 gccgcaaagg ccgcgatttc tttcgccgcc gtcgcgccga gatcgtcggc gaatacgtcg
     2461 gcctcaccgg caagggccgc gttgagtttt ccgaggtgct cgacgtcgcc cacgacgtga
     2521 tcaagcggtt caccgaagac gaagaactcg acaaggtgtt tctcatcttc aacgaattca
     2581 agtcggtgct gacccagcgg gtcgtgatcg aacaactcct gccaatctcg cgctcggcag
     2641 agtcagacgc aggcgatact gcgcaaccgg cggagctgaa ggaatacatt tacgagcagg
     2701 cacccgcgga aatcttcagc cgattgctgc cgcgtctggt cgagaccaaa atctttcgcg
     2761 cgctactgga atcgatcgcg tcggagcaag gcgcgcgcat gacggcgatg gatgctgcgt
     2821 caaagaacgc aggtgacttg atctcttcac tgactctcaa catgaatcgc gtccggcaag
     2881 ccgccatcac cagagagatt atcgagatcg tttcgggcgc ggccgcgctg tagaaggcga
     2941 aggggcaagg gctaagggta agaaggggaa gcgcgacttc gcggcttccc tttcttcttt
     3001 caagggtcgc ttcccaggta ccagttttag tcccgttagg gacggcctat ttatagcagc
     3061 gcgactacga aagatattcg agccccagcg gggcgacata tgccgctcct gacggagctg
     3121 gttcgaatgt tttggtcgtc tgttactata aagatgccgc tcctgacgga gctaagaaca
     3181 aagccttccc aaaaatgagt acggcaatca aagcatcaga accatcatat ctcacgccac
     3241 cacatcatcg cctgtcccgc tacggcccgc tcgtcctgtg ggcggcgctg atctttgttg
     3301 gttcgaccag cttgttgtcc ggttcgcaca catccgcgct ggtgcggccg gtgctatggc
     3361 tgtttccgca cgccagcgaa gcgacgttag ctctaatcca ttttatcgtt cgcaaatgcg
     3421 ggcacctgac cgagtacgca atcctcgcgt tgcttgcgac gcgtgctttc aaaacctctt
     3481 ctcacgattt cttgcgggat cactggttcg tcgcatcact tctccttgta atcgtttact
     3541 cgctgagcga cgaattccat cagagtttcg tgccgtcgcg cacggcttcg atttatgaca
     3601 gcatgattga ttcgtttggc ggactagccg cattggtggt ttacggattg cggcagcgca
     3661 agacgcggca caatcgctga ccagcacttc aaactaaccg tcggagtttg atcttcacta
     3721 cgaggatgtt gttagcgcga cgcagcgtga gggaatgctc tgctccatct tgcatcaaca
     3781 gtttttcaat ctctgttgaa gtaaattgat tcgcgggctt atcgttgatt gcgacaattt
     3841 cgtcgccgct gaggattccc gcttccgccg cgggcgattt ctcagcgacg tctgtaacct
     3901 tgaaaacgcg acagtctttg ccttctgagt caaaatcgat cccgctcatg tcagtttcaa
     3961 acggatcgga aagatgggcg ttaggctcaa gcatcatgcg ctgccgcgag tagtcgatga
     4021 cgaccttgaa gcgccgcatt atttcattgc caatcggtcc gtcgttatct tccgcggcca
     4081 ttgatccttt cgcggcggta gaaaacccga ctatcggcgc attgatcttg aagcgaccca
     4141 attgcatatt gccgaggcgc gcatcaaagc gttttgattc acctcccagg cctctttcgc
     4201 tgttggaaac ctgtgtgctc aaagcactga gaagctggtg tcgatttaca aatggcgagt
     4261 ttatggtgag cgccccgtca gagccggtgt ctatctcaaa cagcccttcg atcggcggct
     4321 ttcccggcaa ggcaatgagc gcgtggacgc gcggagtgcc cttaatagta agcggaagca
     4381 tatcgcctcg ccccgtgtat cgataactca gaggatccaa caggctgagt gtccgcgcgt
     4441 cgtaattaat ttccaccacg aactctttga tgaagtcata gccgatgatg ccatcgatgt
     4501 cgctcgcctc gcagaaagga aaatccagag gcagcaggac cagtctctgg ttaagcacct
     4561 tgactccagg cacgctcaaa gaaactccgg tggccagaga gccttggacg tttccgccta
     4621 caccagtcgc ctttacgctg tcgacttgtt tcaggttcag ccaggccgcc tggcgggcgt
     4681 tcaaaatcga agcgccggcg cccgtgtcga acataaactt cagcggcgct gagttattga
     4741 cgcgcacctg cagcacaatt tcgttgtatt caaattcaaa tgggatattc aaagcgctgt
     4801 gaccggtgac gaattgaaca ttcgtaggcg gttctccggc gctgtttttg ccgggcaagg
     4861 cgatgtttga agcaacgagc agaatggcta tcgcgaaagc ccgcagccgg accgtcgacg
     4921 cctttcggat agaacctgcg tgagctttga tcatggtctt gatgatgaac tctttgctga
     4981 atatctgtcg aggtccaggt tgagacttcg gtcccttgaa cattgactcg tccctgcgcg
     5041 tataatgacg gtgcgacagt accatctgtt agcacaaagg agattgaaga caaatgggaa
     5101 ttctagatcg tctcagcccg agtgcgcagt tcatcgaagt cattgagtgg ctcgacaaca
     5161 cgggcgacac gatgatgtat cgctttccag ttcgcgatca ggagatcaag aacggcgcgc
     5221 a
//
LOCUS       DASZZE010000312         1694 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_320859, whole genome shotgun sequence.
ACCESSION   DASZZE010000312 DASZZE010000000
VERSION     DASZZE010000312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1694)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1694)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1694
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_320859"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1134)
                     /locus_tag="VHD88_06075"
     CDS             complement(<1..1134)
                     /locus_tag="VHD88_06075"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HVS21395.1"
                     /translation="MPVSPTQQTTGATLLIVDDDRSAREGLRSIFESAGHRTIGVSDA
                     PAALRLLQKQTCDLVMLDVELPEVDGVALCRLLRAQPAMKQLPLVVFSADDSEGRKVE
                     AFTAGADDYIVKPSTPGELLSRVNAHLNFAQRESELIGSNRELSFLADLGRGLLRTIM
                     PEQVASRVAGAIYEGTNASQSACAIKNNGKGLAVCVFDREGSAGSSALINMDRLERWL
                     ASSRSTSPAWLTNSREFLLRDAQHETEYLVPIRFGEKIFGAMVVAFATAKDCTEDECR
                     LIDAAAQQAALAAHISKLYLGARESAATLAEEVDRRTAESEMQQRFTEAIIDTLPLSL
                     YAIDREYRIVAWNRNRELGELGLPRGEVLGRNIFDVLTKQSREL"
     gene            complement(1460..>1694)
                     /locus_tag="VHD88_06080"
     CDS             complement(1460..>1694)
                     /locus_tag="VHD88_06080"
                     /inference="COORDINATES: protein motif:HMM:TIGR03831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YgiT-type zinc finger protein"
                     /protein_id="HVS21396.1"
                     /translation="YGCEHCDGTVRPKKVQREAFKHKKGFIILEDIVIGVCDACGARY
                     YSADILHTVNDIANGTKPFERIEEIPVARVSPS"
BASE COUNT          343 a          479 c          495 g          377 t
ORIGIN      
        1 caactcgcgg ctctgcttgg tgagcacatc aaaaatgttt cgtcccagga cttcgccgcg
       61 cggcaacccg agttcgccca gttcgcgatt tcggttccag gcgacaatgc gatactcgcg
      121 atcgattgcg tacaacgaca atggcagggt gtcgatgatc gcttcggtga agcgctgctg
      181 catctcggac tcagcggtgc ggcggtcgac ttcctctgcc agcgtggctg ctgattcgcg
      241 cgcgccgagg tagagcttcg agatgtgcgc cgccagggcg gcctgttggg cggcggcgtc
      301 tattagccgg cattcgtcct cggtgcaatc ttttgccgta gcgaaagcca cgaccatggc
      361 gccaaaaatc ttttcgccga aacgaattgg aaccagatac tccgtttcat gttgtgcgtc
      421 gcgcagcaaa aactctcggc tgtttgtcag ccaggcggga gatgtggaac gcgaagaggc
      481 caaccatctt tccagccgat ccatatttat cagagcagaa cttccggcgc ttccttctcg
      541 atcaaaaaca cacaccgcga gtcccttgcc gttgttcttt attgcacagg cgctctgtga
      601 ggcgttcgtc ccttcataga ttgccccggc gacgcgactc gcgacttgct cgggcatgat
      661 cgttcgcaac aggccgcgcc caagatcggc gagaaagctc aactcgcgat tgctcccgat
      721 tagttccgat tcacgctgcg caaagttcag gtgagcgtta acccgcgaaa gcaactcgcc
      781 cggcgtggac ggcttgacga tgtagtcatc ggccccagcg gtgaaggctt cgactttgcg
      841 gccttcgctg tcgtcggcgg aaaaaacaac caggggcaac tgcttcatcg ccggctgggc
      901 gcgcagcagg cggcaaagcg cgacgccgtc aacttcggga agctcgacgt cgagcatcac
      961 caggtcgcac gtttgttttt gcagcagacg cagcgcagcc ggcgcgtccg acacaccgat
     1021 cgtgcgatgg ccggcgcttt cgaaaatgct gcgcagacct tcgcgtgccg atcgatcgtc
     1081 gtcgacgatc agcagagtgg cgccggttgt ttgttgagtg ggtgaaactg gcattcttcg
     1141 tagcacgggt ttgtggcagt ccttcgcttg gcgaggtggc gttcctgaag atgaggaggc
     1201 gtaattaccg caaccgcttg caacagcgag cggtcactag cctgggacaa aggcgctgga
     1261 ttcagccggc cgatcagaac gccggccgtt cgcgggttag acagagcgtg gacccgcgta
     1321 ccactcttcc aatttgacgg gtgaaggccg agttgtcaag agttattagc tttttcagtg
     1381 caaatcgagt ttcgaccgtt gtatgagcgt tgagcaagtc ccgagttgca aatcttcatt
     1441 tgaagaaact acggaagggt tacgatggcg aaacgcgcgc gacgggaatt tcctcgattc
     1501 gctcgaatgg cttagttccg ttggcaatat catttacggt gtgaaggata tcggcactgt
     1561 aatatctggc tccgcacgcg tcgcacacac cgatcacaat atcttcaagg attatgaatc
     1621 ccttcttatg cttaaaggcc tcgcgctgca ccttcttcgg gcgaacggtt ccgtcgcagt
     1681 gttcgcaacc gtag
//
LOCUS       DASZZE010000313         1775 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_220006, whole genome shotgun sequence.
ACCESSION   DASZZE010000313 DASZZE010000000
VERSION     DASZZE010000313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1775)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1775)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1775
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_220006"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1243
                     /locus_tag="VHD88_06085"
     CDS             <1..1243
                     /locus_tag="VHD88_06085"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: protein motif:HMM:NF003766.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008973 - phosphopentomutase activity
                     [Evidence IEA];
                     GO_process: GO:0009117 - nucleotide metabolic process
                     [Evidence IEA];
                     GO_process: GO:0043094 - cellular metabolic compound
                     salvage [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HVS21397.1"
                     /translation="AVRAGNYCVGHDNNNLAMVGNKTSFNRITLIVLDGAGIGAMPDA
                     ATWGDAGSDTFGHICESRQLSLPNLQGLGLGNIRALAGVEAIENPRGSYGKCALKSNG
                     KDTTTGHWEMAGIILERAFPTYPNGFPKAIIDRFISEAHVPGILGNFAASGTEIIKEL
                     GEEHVKTGKPIVYTSADSVFQIAAHEQVISLERLYEMCETARDILRGEDEVGRVIARP
                     FLGEPGSFYRTENRHDYAVPPPRENLLQLLSEHGLEVVCIGKIASIYDSAGVTQDLTA
                     KNNEQSIDQTIRALRDDTRGLIFSNLVDFDMLYGHRRDTEGYARALEHFDSRWPEIEA
                     AMRQGDLLIITADHGNDPTFPGTDHTREYAPLIVFGKSARQGINLGTRDSLSDIGQTI
                     AENFALGLRAGQSFLHDVSQA"
     gene            1327..>1775
                     /locus_tag="VHD88_06090"
     CDS             1327..>1775
                     /locus_tag="VHD88_06090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21398.1"
                     /translation="MISKFQSKILYLSLLVALLCLSVRTTVAQSTLVTIPSTDVVSER
                     SVYLEFDYTSHYASHHNGGFQSYTPRVAVGVGHNIEVGVNVVYTDGFGVNQPIEIQPN
                     IKWRFYQNEKLRVSAVAGVMLYAPVTHRAGTNTFVMLYALISKKVAG"
BASE COUNT          405 a          500 c          495 g          375 t
ORIGIN      
        1 tgctgtccgc gctggaaact attgcgtcgg gcacgataac aacaatttag cgatggttgg
       61 caacaagact tcattcaatc gaatcacctt aatcgtcctc gacggcgcgg gcatcggcgc
      121 gatgccggac gcggctacct ggggcgacgc gggctcagac acgtttggtc acatctgcga
      181 gtcgcggcag ttgagtctgc caaacctgca aggcctcggt ctcggcaaca ttcgcgcgct
      241 cgccggtgtc gaggcgattg aaaacccgcg cggcagttat ggcaagtgcg cactgaaatc
      301 aaacggcaaa gacacgacga ccggccactg ggaaatggcc ggaatcattc tggaacgcgc
      361 ctttccaacc tatccaaacg gatttcccaa agcgatcatc gatcgattca tcagcgaagc
      421 tcacgtgccg ggaatcctcg gcaactttgc ggcgagcggc actgagatca tcaaagaact
      481 cggcgaggaa catgtgaaga ccggcaagcc gatcgtttac acgtccgccg attcagtctt
      541 tcagattgcc gctcatgaac aggtgatttc gctggaacga ctctacgaaa tgtgcgagac
      601 ggcgcgcgac attctgcgcg gcgaagacga agttggccgc gtcatcgcgc gtccatttct
      661 cggcgagcct ggctcgttct atcgcactga gaaccgacac gattacgccg tgccgccgcc
      721 gcgagagaac cttttgcagc tgttgagtga acacggactt gaggtcgttt gcattggcaa
      781 gattgcttcg atctatgatt cggcgggagt gacgcaggac ctgacggcga agaacaacga
      841 acaatcgatc gatcaaacga ttcgcgctct tcgtgacgac acgcgcggct tgatcttctc
      901 gaatctggtt gatttcgata tgctctacgg ccatcgacgc gacactgaag gctatgcgcg
      961 cgcgctggag cacttcgatt cgcgctggcc tgagatcgag gccgctatgc gccaaggtga
     1021 cctgttaatc atcaccgccg accacggcaa cgatcctacc tttccgggga cggaccacac
     1081 gcgcgaatac gcgccactga tcgttttcgg taagagcgcg cggcaaggca tcaaccttgg
     1141 cacgcgcgat tccctttcag atatcggcca aacgatcgcc gagaattttg ccctgggatt
     1201 gcgtgcgggc cagagtttcc ttcacgatgt ttcccaagcc tgaaacggga accgaaagcc
     1261 tttagtagtg ttatgagaag taacgaccgg acaatctaac tgtgggctaa ggcgatgagg
     1321 cttgaaatga taagcaagtt ccaatcgaag atcttgtatc tttcgctgct cgtggcgctg
     1381 ctttgcttga gtgttcgcac gaccgtggca caatcaactc tggtcacgat tccttcgacc
     1441 gacgtggtct cagaacgcag cgtctatctc gagttcgact acactagtca ttacgcgagc
     1501 catcacaacg gcggctttca gtcttacact ccgcgcgtgg ccgtcggcgt gggccacaac
     1561 atcgaagtcg gagttaacgt ggtttacacc gacggctttg gcgtcaatca gccgatcgaa
     1621 attcagccca acataaaatg gcggttctat caaaacgaaa aactccgcgt gtccgcggtt
     1681 gcgggtgtca tgttgtacgc gcccgtcacg catcgcgccg gaacgaacac tttcgtcatg
     1741 ttgtacgcgc tgatcagcaa gaaggtggcg ggaaa
//
LOCUS       DASZZE010000314         7337 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_269873, whole genome shotgun sequence.
ACCESSION   DASZZE010000314 DASZZE010000000
VERSION     DASZZE010000314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7337)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7337)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7337
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_269873"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            287..1450
                     /locus_tag="VHD88_06095"
     CDS             287..1450
                     /locus_tag="VHD88_06095"
                     /inference="COORDINATES: protein motif:HMM:TIGR01420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus twitching motility protein PilT"
                     /protein_id="HVS21399.1"
                     /translation="MPVKIDDLLVTAIAHFASDLHLKVGSFPVMRIGGELHPVVDAPR
                     LSPEDTLDMAFSMMSNRQKQKLKEVSEADIAYSVKGLGRFRANIFQQRGTVSIVLRVI
                     PDQSKNAGALGLPKVIDRIADERRGLILVTGSTGSGKSTTLAAMIDRINSTRSGHIVT
                     IEDPIEFLHRDKQAFVTQREVDVDTRSFAEALRGALRQDPDVILVGEMRDFETIETAL
                     TAAETGHLVLSTLHTLDATETITRIVVSFPSHQQKSVRIQLAGILKAVISMRLVRAAK
                     GSGRVPAVEIMVSTGLIRDYIINEEKTYLIREAIANGASQYGMQTFDQSLFRLLQSRL
                     ITFEEAVNNATNPDEFKMRVAGILSSDQPLDEGERAAPVEPKREEREMVIVKH"
     gene            complement(1476..2303)
                     /gene="mazG"
                     /locus_tag="VHD88_06100"
     CDS             complement(1476..2303)
                     /gene="mazG"
                     /locus_tag="VHD88_06100"
                     /EC_number="3.6.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF007113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphohydrolase"
                     /protein_id="HVS21400.1"
                     /translation="MPTTFTDLVALMDRLRSPGGCPWDREQTYATLAPMLLEEAYEAF
                     DALEEARQGRPDDLREELGDLLFQITFFARVAKERGEFTIDDVIDQVHAKMVRRHPHV
                     FGDTQARDSAEVLRNWEAIKAEEKRATGKPAGDTDGTSILDGVSTKAPALMEAHQLST
                     KAARVGFDWKRIEDVFEKLQEEVDELREAISTHAQTNDEADDTRVREEVGDLLFVVTN
                     IARHLNVEPEAALKLANRKFRRRFGYIETRLREQNREVGETTLDELEELWQEAKLGT"
     gene            2504..3073
                     /locus_tag="VHD88_06105"
     CDS             2504..3073
                     /locus_tag="VHD88_06105"
                     /inference="COORDINATES: protein motif:HMM:NF020473.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1844 domain-containing protein"
                     /protein_id="HVS21401.1"
                     /translation="MDDQQPTFKVVDRRPFNPDGTPRELSPEEKQETERVAESLKTPV
                     VENVQRAPSPSAAPAQETTTRREPQPRPAPSSAETETPTHTGGDPLDDPASFLSLIMS
                     LASNAAGSLGMMPHPVTGETGVDLKTGKHWIDVLGMLEQKTHGNLDEQEAQVIESLLA
                     DLRMQYVSFASSPTPPPAKFSASDITGGK"
     gene            3104..3940
                     /locus_tag="VHD88_06110"
     CDS             3104..3940
                     /locus_tag="VHD88_06110"
                     /inference="COORDINATES: protein motif:HMM:NF024118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HVS21402.1"
                     /translation="MVGDRTFAFLFTIYDLRFAIHEMKLTFLGTGTSTGVPSIACDCE
                     TCTSDDPRDKRLRVSVLIEHAGQTVIVDTSTDFRQQALRHGLKHLDAVLVTHCHADHI
                     FGLDDIRPLNFRHGALGLYANERAWVDIRRIFKYVFEPSHFGGGLPQIVPHTVVAGAP
                     FCLAPDLKITPLEVIHGKLPVIAYRFNDFAYATDLSEIPPATIDGLRDLKVLVLDCLR
                     IKPHTTHLWLERALEYVEELKPKRTYFTHITHDVKHARDSALLPDGVEWAYDGLVIND
                     EL"
     gene            3958..4386
                     /locus_tag="VHD88_06115"
     CDS             3958..4386
                     /locus_tag="VHD88_06115"
                     /inference="COORDINATES: protein motif:HMM:TIGR02436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four helix bundle protein"
                     /protein_id="HVS21403.1"
                     /translation="MNDIERRDLRKRTKLFALRIIKLHASLPKSTEGQVLGKQVLRSG
                     TSVGAHYREAKRARSTAEFVSKIEGALQELDETIYWLELLTESRIVPESRLTSLKGEA
                     EELMKILVTSAKTAKKNRLSGDSSFRVHTSSLLYASFPRN"
     gene            4364..5317
                     /locus_tag="VHD88_06120"
     CDS             4364..5317
                     /locus_tag="VHD88_06120"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: protein motif:HMM:NF004160.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HVS21404.1"
                     /translation="MRLFHGTDNADIARPTVLTLGVFDGLHLGHQLIMQTVVERARTV
                     GAVPTVITFEPHPRAVLHPESAPPLLQTFDQKIEALGVLGIEQTIVIHFDKAFAEIGA
                     GDFLRDVVTDRLHAKEVYLGRGFAFGHNREGNIDLLRTVSQSLGFFADEVGEVRLRGR
                     RASSSRIRELLHQGRVNLARRMLGRPYGVEGRVVRGANRGAKIGFPTANLHPQNRVIP
                     RNGVYVTATLIDGQWRRSVTNIGTRPTFEIDTETSVETFVVNWSGDLYGDVVRVRFLH
                     RLRDEKKFNSIEELKSQIERDVARAQDYFEHAGVKKELSVI"
     gene            6140..7270
                     /locus_tag="VHD88_06125"
     CDS             6140..7270
                     /locus_tag="VHD88_06125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21405.1"
                     /translation="MDSSGGMVDLRVRVVADRRKVRAQTNDHCVRSADVCLVALIPYL
                     SMLSHRATTVDVAQALTFTRRPDLFRLPEIVAGLVLALIGIGARRGILRWRDPILLVA
                     MSFALAVFAVFNQQIITGRSLQPIHYEWFIANYCALVALVLTAAIWWRSRERLRLMNR
                     RLALIAIIALAWALGEVWLAASVSFDYNRTIDEAKPAANRLASLAQINETFQSNSNNA
                     SVVLMADLKLADRLPTDAPQAVLWAPRMLVFPGVSEAENREHFFYQLYYLGYDEKKFW
                     AELDHADWNFLAGMFPYNRLSPAVSGSNAPINSEELRAQLASYLEYSRTFNRDRAASP
                     TPSYLVVHANSQPDYANLDRWYQRDAGERVGTFILYRLKLRE"
BASE COUNT         1567 a         2063 c         2001 g         1706 t
ORIGIN      
        1 caagccccga gaatatctcg tagtggcggg gaataaacgt ggagatgcta gattgaactg
       61 tcatcgtcgt tcctcctggc tcaggtttgc tccgagccag tttactcaaa cgacctgaca
      121 ttcaacatac atgtctccaa agcaaaaccg ttgacgactc ttcgagtcaa caagtatgat
      181 gaatacggcg ttactgcctg atcacatctg agctttccgt ttcttgccca ttccctctca
      241 agcgctttca attcactatc tttattgatt tctcgcgtga acatttatgc ctgttaagat
      301 tgacgacctc ctggttacag ccatcgcaca cttcgcttcc gatctgcact taaaggtcgg
      361 ttcgtttcct gtcatgcgca tcggcggaga gctacatccg gtcgtggatg cgccacgact
      421 ctcgccggaa gacaccctgg acatggcgtt ttcgatgatg tcgaatcggc agaagcaaaa
      481 attgaaagaa gtttcagaag cggatattgc gtacagcgtc aaaggcctgg gccgctttcg
      541 cgccaacatt tttcagcaac gcggaaccgt gagcatcgtg ctgcgcgtaa ttcccgatca
      601 aagcaagaac gctggggcac tcggtttgcc gaaagtgatc gaccggatcg cggacgagcg
      661 acgcggcttg attctggtga ctggctcaac cggctcagga aaatcaacga cgctggcggc
      721 gatgatcgat cgcatcaact cgacgcgatc cggacacatc gtcaccatcg aagatccgat
      781 tgagtttttg caccgcgaca agcaggcttt cgtaactcaa cgcgaagttg acgtggacac
      841 gcgttcgttt gcggaagcgc tgcgcggcgc tctgcgacag gacccggacg taattctggt
      901 cggcgaaatg cgcgactttg aaacgatcga gacggcattg acagcggccg aaaccggcca
      961 cctcgtgctt tcgactctgc acacactgga tgccaccgaa acgatcacgc gcatcgtcgt
     1021 gtcgtttcct tcgcatcagc agaaatccgt gcgcatccag ttggcgggaa ttttgaaggc
     1081 tgtgatctcg atgcgtctgg tgcgggcggc gaaaggctcg ggccgcgttc cggcagtcga
     1141 gatcatggtt tcgacgggac tgattcgcga ttacatcatc aacgaagaga agacctatct
     1201 gattcgcgaa gcgatcgcga acggcgcctc gcaatacggc atgcagactt tcgatcagtc
     1261 tctgtttcga ctcttgcagt cgcgtttgat cacttttgag gaggccgtga acaacgccac
     1321 gaacccggat gagttcaaga tgcgagtggc gggaattctt tcttcagatc agccacttga
     1381 cgaaggcgag agagccgctc cggtcgagcc gaaacgcgaa gagcgcgaga tggtgattgt
     1441 gaagcactga cttgggaagt ctcaagtctc gagtctcaag tcccaagttt tgcttcctgc
     1501 cacaattctt ccaattcatc aagcgtcgtt tcaccaacct cgcggttctg ctcgcgcaat
     1561 ctcgtttcga tatagccgaa gcgtcgccga aacttgcggt tcgccagctt cagcgcggct
     1621 tccggctcga cgttgagatg ccgagcgatg ttcgtcacca cgaatagcaa atcgccgacc
     1681 tcttcgcgta cgcgcgtgtc atcggcttca tcattcgttt gggcatgcgt gctgatcgcc
     1741 tcgcgcaatt cgtcaacctc ttcctgtaac ttctcgaaaa catcttcgat gcgtttccag
     1801 tcgaaaccaa cgcgtgctgc tttggttgaa agctgatgcg cctccatcag cgcaggcgct
     1861 ttcgtcgaaa cgccgtcaag aatcgatgtg ccgtcagtat cgcccgccgg ctttccggtc
     1921 gcgcgttttt cctcggcctt gatcgcttcc cagttgcgca gcacctcagc agagtcgcgc
     1981 gcctgcgtgt caccgaacac gtgcggatga cgccgcacca tcttcgcatg cacttgatcg
     2041 ataacatcgt cgatggtgaa ctcgccgcgc tctttcgcga cgcgcgcgaa aaatgtgatc
     2101 tgaaaaagca gatcgccgag ttcttcgcgc agatcgtcgg gccgtccttg ccgtgcttct
     2161 tccagcgcgt cgaaagcttc gtaagcttct tcgagcagca tcggcgcgag cgttgcgtaa
     2221 gtttgttcgc ggtcccacgg acagccgccg ggcgaacgca ggcgatccat caaagcaaca
     2281 aggtcagtga atgtcgtcgg catgtgttag atagtctcag gtctcaagtc tcagtctctc
     2341 aaggcagcat aagctaatgt cattgagcgt cccaagccgt ctttgcgatc aagcgaacgc
     2401 gaatgctaac atcgcgcttg tctttctaaa ctcaattatt agcgcgcgcc acgatggctt
     2461 cgaatgaacc cgaaacgcgt ggataacgct ctgagcaacc gcaatggacg atcagcaacc
     2521 gactttcaaa gtagttgacc gccggccttt caatcctgac ggcacgccgc gtgagctttc
     2581 gccggaagaa aagcaggaaa ctgagcgcgt cgcggagtcg ctaaagactc ccgtggtgga
     2641 aaacgttcag cgcgcgcctt cgccgagcgc tgctccggcg caagagacaa cgacgcgtcg
     2701 tgagccgcaa ccccgaccgg cgccgtctag tgcagagacg gaaactccta cccataccgg
     2761 cggcgatccg ctcgacgatc cagcaagttt tctgagcctg atcatgtcgc tggcgtcgaa
     2821 tgcagccggg agtctgggaa tgatgccgca tccagtcacc ggcgaaaccg gagtcgatct
     2881 aaagacggga aagcactgga tcgacgtgct cggaatgttg gagcaaaaga cacacggcaa
     2941 tctcgacgaa caggaagctc aggtcatcga gagtttgctg gctgatctgc gaatgcagta
     3001 cgtttcgttt gccagctcgc ccacacctcc gcccgcaaag ttcagcgcca gcgatatcac
     3061 cggcggaaaa taaaagccgt gaatcgtaaa ccgtgaatag taaatggtgg gcgatcggac
     3121 gtttgctttt ctatttacga tttacgattt acgatttgcg attcacgaga tgaagctcac
     3181 ctttctcggc accggcacgt caaccggcgt tccttcgatc gcctgcgact gcgagacgtg
     3241 cacttccgac gatccgcgcg acaaacgcct gcgggtttcc gtgctgatcg agcacgctgg
     3301 ccagactgtc atcgttgata cgtccacaga ctttcgtcaa caagccttgc gacatgggct
     3361 gaagcatctc gacgcggtgc tggtcacgca ctgtcacgcc gatcacatct ttggtctcga
     3421 cgacattcgg ccgctcaact ttcgccacgg cgcgttggga ctttatgcca atgaacgcgc
     3481 atgggtcgat atccgtcgca tcttcaaata cgtctttgag ccgtcacact tcggcggcgg
     3541 cttgccgcag atcgtgccgc ataccgtcgt cgccggcgcg ccgttttgtc tcgctcccga
     3601 tttgaagata acgcctttgg aagtcattca cgggaagctg ccggtaatcg cttaccgctt
     3661 caacgacttt gcctatgcga ctgacttgag cgagattcca cccgcgacga tcgatggttt
     3721 gcgcgatctg aaagtgctcg tgctcgattg tctgcgcatc aaaccgcata cgacgcatct
     3781 ttggctggaa cgcgcgctgg aatacgtcga agagttgaaa ccaaagcgaa cttacttcac
     3841 gcacatcacg cacgacgtaa agcacgcgcg cgattcagcg ctgctgccgg acggagttga
     3901 gtgggcttac gatgggctcg ttattaacga tgaactatga acgatgaact tggaatcatg
     3961 aatgatattg agcgccgcga cttgcggaag cggaccaaac tgtttgcttt gaggatcatc
     4021 aagctacacg cgtcactgcc caaatcaacc gaaggtcagg ttctcggcaa gcaagtactc
     4081 cgcagcggaa cgtcagtcgg cgcgcactat cgtgaagcta agcgggcgag atcgacggcg
     4141 gaattcgtca gcaaaatcga aggtgcgttg caggaactcg acgaaaccat ctattggctc
     4201 gaactattaa ccgaaagcag aatcgtacct gagtcccgcc tcacgagcct caaaggcgaa
     4261 gctgaagaat tgatgaagat tcttgtgacc tctgcgaaga ctgcgaagaa gaatcgcttg
     4321 agcggagatt catctttccg cgttcatact tcatcgttgc tctatgcgtc ttttccacgg
     4381 aactgacaac gccgacatcg cgcgcccgac ggtgctgacg ctgggcgtgt ttgacggtct
     4441 gcatctgggg catcagctca tcatgcagac ggtcgtcgaa cgcgcgcgca cagttggcgc
     4501 ggttccaacc gtgatcactt tcgagcccca tccgcgcgct gtcttgcatc ccgaatcagc
     4561 gccgccgctg ctgcaaacct tcgatcagaa gatcgaagca ctcggcgtgc tcggcataga
     4621 acaaaccatc gtcatccact ttgataaagc cttcgcggag attggcgccg gggattttct
     4681 gcgcgacgtg gtaacggatc gtctgcatgc gaaagaagtt tatctcggtc gtggttttgc
     4741 tttcggtcac aatcgcgaag gcaatatcga tctattgcgg actgttagtc agagtctcgg
     4801 cttctttgct gacgaggtcg gagaagtgcg tctgcgtggg cggcgggcca gctcgagtcg
     4861 cattcgcgag ctgcttcatc agggtcgggt gaatctcgcg cggcgcatgc tcggccgacc
     4921 atacggtgtt gaaggtcgtg tggtgcgcgg cgctaatcgc ggcgccaaga ttggatttcc
     4981 aaccgccaat cttcatccgc agaatcgcgt gattcctcgc aacggcgtct atgtcacggc
     5041 gactctaatc gatggccaat ggcggcgcag cgtaaccaac attggcacgc gcccgacttt
     5101 tgaaatagac acggaaacgt ccgtcgagac ttttgtcgtg aactggtcag gcgatctgta
     5161 cggcgacgta gtgcgcgtgc gctttctgca tcgcttgcgc gacgaaaaga aattcaactc
     5221 gatcgaggaa ctgaaatctc agatcgaacg tgacgttgcg cgcgcgcaag attacttcga
     5281 acacgcaggg gtgaagaaag agttatcggt gatctaagag tccgactcgg cggcgttcag
     5341 agtaccgact tcagccgggt ctttgtcgaa tcaagaaacc ccaactagag ttggtactct
     5401 aaacacccgt gaccacagat catgacaccg cgcgaattcg ctggcgctgg ggaattggcg
     5461 cggcgatcgc gatgacgctg atcgcgcttt tcccgcaagc ccatttcatc gccaatcgcg
     5521 ggcacgagtg gcacggagct aacgcgattt cgcatcccga cgaagtcgcc tactcggctt
     5581 accttgcttc actgattcgt ggccgtccac gccgttacga tccatacacg ggtcgcggcg
     5641 agcaaagcgc aacaccggcc gcggaatcgc tcttttcgat tcaaataatt cccgcttact
     5701 cggtggcgtt gccggctcgc tggttgggac tcaccgcttc cacggtcttc gtggttttcc
     5761 ccgcgttgtg cgcgctcttc tcgtcattcg cgatcttctg gttcatcgcg ttgcttacgc
     5821 gcgatgaacg attcagcgcc gccggggtag tgatcatttt cggattcgga actctaatcg
     5881 cggggcaggg aatcgcgcga cacattccaa atctgaacta cttgattcca ctttggatct
     5941 caaaccgcgt tgcgcctcct tcgatttatc acctgccgtt tctgcgcttt tatcaaccgg
     6001 ccgtcgcgtt tccgttgttc ttcgtccttt gcgcgctggt gtggctggca ttgacgcgct
     6061 tgaatcaacg ttcagcaatc gtcgcggcag ttggagcagg cctcacgttc gctctgctga
     6121 tcttttcgta cttctattta tggacagcag cggcggcatg gttgatttgc gtgtgcgtgt
     6181 tgtggctgat cgccggaagg tcagagcgca aacgaacgat cattgtgttc ggtctgctga
     6241 tgtttgcctc gtcgcgttga ttccttatct ctcaatgctt tcgcatcgcg cgacgacagt
     6301 cgatgtcgca caagcgttga ccttcactcg ccggcccgat ctttttcgtc ttcccgagat
     6361 cgtcgccggg ctcgttctag cgctgatcgg aataggagcc cggcgcggaa ttcttcgctg
     6421 gcgcgatccc atcttgctgg tcgcgatgtc gtttgcgctc gcagtcttcg ccgttttcaa
     6481 ccaacaaata attaccggaa ggtctttgca gccgatccat tacgagtggt tcattgctaa
     6541 ctactgcgca ttggtcgctc tcgtgttgac cgctgccatc tggtggcgca gcagagagcg
     6601 cttgcgtttg atgaacaggc gcctggcgtt gattgcaatc attgcgctcg cttgggctct
     6661 cggcgaagta tggttagcgg cgagcgtgag ctttgattac aatcgcacga ttgacgaagc
     6721 gaagcccgca gctaatcgcc tcgcatcact agcgcagatc aacgagacat ttcaatcgaa
     6781 ctcgaacaac gcgtcagtgg ttttgatggc ggatctcaag ttggctgatc gactgccaac
     6841 cgacgcgccg caagcagttt tgtgggcgcc gcgaatgctt gtctttcccg gagtcagcga
     6901 agccgagaat cgcgaacact tcttctatca gctttattat cttggttatg acgaaaagaa
     6961 attctgggcg gaactggatc atgcggattg gaatttcctg gctggaatgt ttccttacaa
     7021 tcgtctgagt ccggcggtga gtggaagcaa cgcgccgatc aattctgaag agctgcgcgc
     7081 acagcttgcg agctacctcg aatactcacg cacattcaat cgtgatcgcg cggcgtcacc
     7141 aacgccctct tatctggtcg tgcacgccaa tagccagcct gactatgcga acctcgatcg
     7201 ctggtatcag cgcgatgcag gagagcgtgt cggcaccttt attctgtacc ggttgaaatt
     7261 gcgtgagtga gacgacgggc cacagatgaa cacgaatttg cacagatatt tagaaattgt
     7321 tcggcatgtt gaaatct
//
LOCUS       DASZZE010000315         3603 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_28477, whole genome shotgun sequence.
ACCESSION   DASZZE010000315 DASZZE010000000
VERSION     DASZZE010000315.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3603)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3603)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3603
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28477"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..602)
                     /locus_tag="VHD88_06130"
     CDS             complement(<1..602)
                     /locus_tag="VHD88_06130"
                     /inference="COORDINATES: protein motif:HMM:NF012951.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase family protein"
                     /protein_id="HVS21406.1"
                     /translation="MTSILMVRVRFAPSPTGYLHIGAARSALFNWLFARKMGGKFLLR
                     IEDTDLQRSTDESTRSIIEGLEWLGLDYDEEIVFQSDNAEKHRAAARKLVEEGKAYRD
                     FTPKEQREDKSVKQGIVDRARAHAAEGIDHRSNPHRDLPKEGSDRRAAEGEPFAIRLK
                     IAREGASRFTDIVYGEQERSFSEIEDLVLLRSDGHPLYNLS"
     gene            complement(708..800)
                     /locus_tag="VHD88_06135"
     tRNA            complement(708..800)
                     /locus_tag="VHD88_06135"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(764..766),aa:Ser,seq:gct)
     gene            complement(856..1248)
                     /locus_tag="VHD88_06140"
     CDS             complement(856..1248)
                     /locus_tag="VHD88_06140"
                     /inference="COORDINATES: protein motif:HMM:NF033788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HVS21407.1"
                     /translation="MTKKNYHIEDLFKALADRTRLRLISLIGDSEVCVCFFVAILKTS
                     QPKISRHLAYLRRAGIVAARREGKWMHYRLAEPPDEHAAHIYREVRASLAAHPDLQRD
                     REKLLKVCCATQLPVQLRRAPRPLGLAA"
     gene            complement(1245..1787)
                     /locus_tag="VHD88_06145"
     CDS             complement(1245..1787)
                     /locus_tag="VHD88_06145"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024812.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HVS21408.1"
                     /translation="MVIESHISVKANVTGPVVEQMRPGDWAQLKAIYLEGIATGHATF
                     EIESPSWEAWDAAHLSFARLVARDDQTISGWAALSPISRRQAYAGVAEVSVYVAATNR
                     NAGIGRALLDALIAESERNGIWTLQAAVFPENEATIALHRRCGFREVGCRERIGKLNG
                     EWRDTILLERRSALIGTGMK"
     gene            1834..2316
                     /locus_tag="VHD88_06150"
     CDS             1834..2316
                     /locus_tag="VHD88_06150"
                     /inference="COORDINATES: protein motif:HMM:NF041414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsI/CadI family heavy metal resistance
                     metalloenzyme"
                     /protein_id="HVS21409.1"
                     /translation="MESKNNTTATAPEVSALKAHLALNVHSVEQSIEFYRKMFGIEPS
                     KVRTGYAKFDVHNPPLNFTLNEASFANRGALSHLGIQVRSTEDVLATRQKWNDAGLLT
                     REEMQTNCCYAMQDKAWVQDPDGNEWEVFVVLEDNLTESTACCTGTSAESQATQSCCA
                     "
     gene            2313..2996
                     /locus_tag="VHD88_06155"
     CDS             2313..2996
                     /locus_tag="VHD88_06155"
                     /inference="COORDINATES: protein motif:HMM:NF012455.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MIP/aquaporin family protein"
                     /protein_id="HVS21410.1"
                     /translation="MTTSLNRRAAAEAIGTGLLLATVVGSGIMGERLAGGNVAITLLS
                     NSIATGAALAALILTFGPISGAHFNPAVTISCAAQRELKWRDATAYIFAQLGGAFAGV
                     ATAHLMFGDPPFFVSHHARNGGAQLFSEFVATFGLLLVIRVCARLQPQFVAFAVGAYI
                     TAAYWFTASTSLANPAVTLARSVSDTFVGIRPVDVPAFVLAQLFGAAAATFLLRWLIP
                     NPPLRSSDG"
     gene            2989..3420
                     /locus_tag="VHD88_06160"
     CDS             2989..3420
                     /locus_tag="VHD88_06160"
                     /EC_number="1.20.4.4"
                     /inference="COORDINATES: protein motif:HMM:NF013607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030612 - arsenate reductase (thioredoxin)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase ArsC"
                     /protein_id="HVS21411.1"
                     /translation="MAEKKRVLILCTGNSARSQMAEGLLRHLAGDRFEVFSAGVAPSF
                     VRPQAIEAMNEIGIDISQHRSKSVDEFLDEQLDYVITVCDHANQRCPIFPGAVQRIHL
                     SIDDPVVGGSEEMQLEAFRRARDELQRRIKSFVDDLAPAGK"
BASE COUNT          753 a         1002 c         1041 g          807 t
ORIGIN      
        1 gagaggttgt aaagtggatg accgtctgaa cgcagcaaaa ctaaatcttc aatctcagaa
       61 aacgagcgct cctgttcgcc ataaacgata tccgtgaatc gcgacgcgcc ttcgcgcgcg
      121 attttcaagc gaattgcgaa cggctcgcct tcggcggcgc gtcgatcgga tccttccttc
      181 ggcagatcac gatgaggatt gctgcgatga tcgatgcctt cagcggcatg tgcgcgggcg
      241 cgatcaacga tgccttgctt aacggatttg tcttcgcgtt gttctttcgg cgtgaagtcg
      301 cgataggctt tgccttcttc caccagcttt cgcgccgccg cgcggtgctt ctcggcattg
      361 tcggactgaa agacaatctc ttcgtcgtaa tcaagtccga gccactcgag tccttcaatg
      421 atcgagcgtg ttgattcgtc agtcgagcgc tgcagatcgg tgtcttcgat gcgcagcaga
      481 aacttcccgc ccatcttgcg cgcgaacagc cagttaaaaa gcgccgagcg cgcggcgccg
      541 atgtgcagat agccggtagg tgatggggcg aaacgaacgc gaaccataag aatagaggtc
      601 atagtgatag aggtcagagg ccagaagtca gaggtcagta gaaggagctg aacgccttta
      661 ctgaccgctg atctctgacc tctgacctcc cgtttttccc gtttttctgg cggagatgac
      721 aggattcgaa cctgtgaagg gcttttaaga cccttaacgg tttagcaaac cgccgccttc
      781 agccactcgg ccacatctcc gcgacgatgt cgagaagtta ttctaagccg cgagactcga
      841 ttgtcaaggc atgtgtcacg cagccagccc taacggccgc ggcgcgcggc gcagttgcac
      901 gggaagctga gtcgcgcagc aaactttcag aagcttctca cggtcacgct gcaggtccgg
      961 atgcgctgcc agcgacgcgc gcacttcgcg gtaaatgtgc gccgcgtgct cgtcgggcgg
     1021 ctccgccaga cgatagtgca tccacttgcc ttcgcgccgt gctgcgacta ttccagcgcg
     1081 tcgcaggtac gcaaggtggc gcgaaatctt aggctgactg gtcttcagaa tcgccacgaa
     1141 gaagcacacg caaacttctg aatctccgat caggctgatc agccgcagac gcgtgcggtc
     1201 cgccaaagct ttgaaaagat cttcgatgtg gtagttcttt tttgtcattt cattccggtt
     1261 ccaatcagcg cgctgcgccg ctcgagcaag atggtgtcgc gccactcgcc gtttagtttc
     1321 ccgatgcgtt cgcggcaacc gacctcgcga aagccgcaac ggcggtgtaa agcgatcgtg
     1381 gcttcgttct ctggaaacac ggcggcctgc aacgtccaga tgccattcct ttccgattcc
     1441 gcaatgagcg cgtcaagcaa cgcgcgcccg attccggcgt tacgattggt tgcagcgaca
     1501 tagacactca cttcggcaac accggcgtac gcctgtcgcc gggaaattgg actgagcgcc
     1561 gcccatcctg aaattgtctg gtcgtcacgc gcgaccagcc gcgcgaacga taggtgcgcg
     1621 gcgtcccacg cttcccacga cggcgactcg atttcgaacg tagcgtggcc tgtggcgatg
     1681 ccttcgagat agatcgcttt cagttgcgcc caatcgcccg gcctcatttg ctcaaccacc
     1741 gggcctgtca cattcgcctt gacagatatg tgtgattcga ttaccatcag gctcgcattc
     1801 gctcaggcga atatgattct agggaggttt ccaatggaaa gcaagaacaa tacgaccgcg
     1861 acggcgccgg aggtttcggc attgaaggct catttggccc ttaacgtgca cagcgtggaa
     1921 cagagtatcg agttctatcg caaaatgttc ggcatcgagc cgagcaaggt gcgcacgggc
     1981 tatgcgaagt ttgacgtgca caacccgccg ttgaacttca cgctcaacga ggcgtcgttt
     2041 gcgaaccgag gtgcgctgtc gcatctggga atccaggtgc gctcgaccga agacgttttg
     2101 gcgacgagac agaagtggaa cgatgccggc ctattgacgc gcgaagagat gcagaccaac
     2161 tgttgttacg cgatgcagga caaggcctgg gtgcaagacc cggacggaaa cgaatgggaa
     2221 gttttcgtcg tgctcgaaga caatctgacg gaatcaactg cgtgctgcac cggcacgagc
     2281 gctgaaagcc aagcgacaca gagttgttgc gcatgacaac cagcttgaat cgaagagcgg
     2341 ccgcggaagc tatcggaacc gggctgttgc tcgccactgt ggttggctct ggaataatgg
     2401 gagagcggtt agccggtgga aacgtcgcca tcacgctgct gtcaaacagc atcgcgactg
     2461 gcgctgcgtt ggcggcgctg attctaacct tcggcccgat ttcgggggcg catttcaatc
     2521 ccgcagtaac catctcttgc gcggcgcaac gcgaattgaa gtggagagat gctacggctt
     2581 acatcttcgc acaactcggc ggagctttcg cgggtgtggc aacggcgcat ctgatgtttg
     2641 gtgatccgcc cttcttcgtc tctcatcacg cgcgaaatgg cggtgcacag ttgttcagcg
     2701 agttcgtcgc tactttcggt ttgctgttgg tgatccgagt ctgtgcgaga ttgcaaccac
     2761 aattcgtagc ctttgcggtc ggagcttaca ttactgccgc ttactggttc actgcgtcca
     2821 cgtctctcgc gaatccagcg gtgactttgg cgcgatcagt aagcgacacg ttcgtcggca
     2881 ttcggcctgt ggatgtcccg gcttttgttt tggcacaact attcggggct gcggcggcaa
     2941 catttttgct ccgctggcta attcctaatc cgccgcttag gagttccgat ggctgaaaag
     3001 aaacgagtgc tgatcctctg caccggcaac tcggcgcgga gccagatggc tgaaggactc
     3061 ttgcggcatc ttgccggcga tcgttttgaa gtcttcagtg cgggcgttgc gccgagcttc
     3121 gtgcggccgc aggccatcga agcgatgaat gagattggga tcgatatctc acaacatcgc
     3181 tcaaagtcag tcgatgagtt tctggatgag cagctcgatt acgtgatcac ggtttgcgat
     3241 cacgctaacc agcgatgccc aatctttccc ggcgcagtcc agcgaattca cttgagcatc
     3301 gacgatcccg ttgtgggtgg tagtgaagag atgcaactgg aagcctttcg tcgcgcccgc
     3361 gatgaattgc aacgccgaat caaatcgttc gttgacgacc tcgcgccggc aggtaaatga
     3421 gagcagaaaa acggcgccac cagaattgat ctcggcggcg ccgtcttagt tttgcacttg
     3481 acggaactta ctgtattgcg ctataaaggg ctttgtatag caaagccaat cgttggccgg
     3541 gcccccttac gatgatgcct tttatttgtg aagatttcct gggatgcgga aacccgtggt
     3601 atc
//
LOCUS       DASZZE010000316         2793 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_320934, whole genome shotgun sequence.
ACCESSION   DASZZE010000316 DASZZE010000000
VERSION     DASZZE010000316.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2793)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2793)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2793
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_320934"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..267
                     /locus_tag="VHD88_06165"
     CDS             <1..267
                     /locus_tag="VHD88_06165"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF012441.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004590 - orotidine-5'-phosphate
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine 5'-phosphate decarboxylase / HUMPS
                     family protein"
                     /protein_id="HVS21412.1"
                     /translation="LDGVVASPQEIKIIRDAVSKSEFLIVTPGIRAARAHGDDQRRVM
                     TAAEAIRAGADYLVVGRPILNADDPVDAARKIVKEINSAIVESS"
     gene            351..1943
                     /locus_tag="VHD88_06170"
     CDS             351..1943
                     /locus_tag="VHD88_06170"
                     /inference="COORDINATES: protein motif:HMM:NF022750.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3108 domain-containing protein"
                     /protein_id="HVS21413.1"
                     /translation="MHGKLKFSLRLAQLTALLVSLTCTLHAQQKSEASQSPFNAAAYR
                     VGERLTYNVSFSQFVSAAHVELFVAARGTFFNRDGIQLRAHVETTGVVNVALFAINND
                     YATYVDPTTGLPFRAQQVVREAGRTSDSASDYNQPTGIAALPAQVGTGVFPGTYDLLS
                     ALYRVRALPLADRSSYFITVRDEGEEYQAEVKVIGRQFLKTNVGSFSTIVTRLNVKKP
                     HDYNIRIYFSDDERHVPVLITAKHPSGEIRAELAGAQLTTPATPTPASKTSVRPPNRT
                     VPPDPTAPINPSAAGSVQSLTSTATSTDTLPPDLPFKVGEQLSYQVYLGAPAQPVGSL
                     TFVVRARGRYFNRDGLLISATAQTTAVGARVFLVNDQVNSYVDPTTLLPFRTELNLSE
                     GKYRSSRGYNLDQNRGAAVADNKERIDIPVGTHDLISLVYAIRTFDLTPHRQNAISIL
                     ATNRPRTLVVESQRRETIELNGQKVSAILLKLTTDDPQSDKMQIRMWVGDDSRHLPLR
                     FTAVTELGPVRADLVIVPATPQ"
     gene            2200..>2793
                     /locus_tag="VHD88_06175"
     CDS             2200..>2793
                     /locus_tag="VHD88_06175"
                     /inference="COORDINATES: protein motif:HMM:NF015213.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0033573 - high-affinity iron permease
                     complex [Evidence IEA];
                     GO_function: GO:0005381 - iron ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0034755 - iron ion transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family protein"
                     /protein_id="HVS21414.1"
                     /translation="MLQSFIIILREGFESFLLVAVILSYLRKSQQRQLAPAVYSAIGV
                     AIAISGGLGYLLLKMQTGSQDVIEQYLGQRLGPSLTGFLANESLREAVLGVVAIVMVL
                     SLVIYMWRTGPKLKEKMEGRLGDVSARRSGWTAFAGVFLFTVLTISREGMETALLLLQ
                     VRSPRLVWGALLGLAAAAGMAWAWAQFGHLINVKRFFQ"
BASE COUNT          595 a          806 c          778 g          614 t
ORIGIN      
        1 ctcgacggcg tggttgcttc acctcaagaa atcaagatca ttcgcgacgc agtttcaaag
       61 tcagagttct tgatcgtcac acccggcatc cgcgctgctc gcgcccacgg tgacgatcag
      121 cgacgcgtga tgactgccgc cgaggcgatt cgtgccggag ccgattatct tgttgtcgga
      181 cgtccgattt tgaatgcaga cgatccggtt gatgccgcac gaaagatcgt caaagagatc
      241 aatagcgcga ttgtagagtc ctcctgaatc aacggaacaa acggccggcc aaagcgttca
      301 gatggaatga gttgttgcgc catgcggcaa cttgccatta tcattcgaag gtgcacggaa
      361 agctgaagtt ctcactcaga ctcgcgcaat tgacggccct gctggtttcg ctgacctgca
      421 cgctccacgc ccaacagaag agcgaagcgt ctcagtcccc gttcaacgca gcggcatatc
      481 gagtgggcga gcggctgact tacaacgtgt ctttttcgca gtttgttagc gccgcgcatg
      541 ttgaactttt tgtcgccgcg cgtgggacgt tcttcaatcg cgacggcatt caactgcgcg
      601 cgcacgtaga aaccacgggc gtagtgaacg tggcactgtt cgccatcaac aacgactacg
      661 cgacatacgt tgatcccacg acagggttac cgtttcgcgc gcagcaggtc gtgcgcgaag
      721 cgggtcgcac ttcggatagc gcgagcgatt acaaccagcc caccggaatc gcggcgcttc
      781 cggcgcaagt gggcacggga gtttttcccg gaacgtacga tctgctctcc gcgctttatc
      841 gcgttcgcgc ccttccgttg gccgaccgtt cttcctattt catcaccgtg cgcgacgaag
      901 gcgaagagta tcaggccgaa gttaaagtta ttggacgcca atttctcaag accaacgtcg
      961 gctcgttcag tacgattgtc acgcggctca atgttaagaa accacacgac tacaacattc
     1021 gcatttattt tagcgatgac gagcggcacg ttcctgtact gattactgcg aagcatccat
     1081 cgggcgagat tcgcgccgaa ctggctggtg cgcaactgac gacgccggca acgccaacgc
     1141 ccgcttcaaa gacgtcggta agaccgccga accggaccgt gcctccggac ccaaccgctc
     1201 cgatcaatcc ttcagcggcg ggaagcgttc agtctttgac gtcgaccgca acctctactg
     1261 acacgttgcc gccagacttg cctttcaaag tcggcgaaca actcagttac caagtctatc
     1321 ttggtgcgcc ggcgcagcca gtgggttcgt tgacgttcgt cgtgcgcgcg cgcgggcgat
     1381 acttcaatcg cgacggtctg ctaatttcag ccaccgcaca aacaaccgcg gtgggggcgc
     1441 gggtctttct tgtcaacgat caagtcaatt cgtacgtgga cccaacaacg ctgctgccgt
     1501 ttcgcaccga actaaacctg agcgagggca agtatcgatc gagtcgcggt tacaacctcg
     1561 atcagaatcg cggcgccgcg gtggcggaca acaaggaacg catagacatt cccgtgggca
     1621 cgcatgattt gatctcgctg gtttacgcga ttcgcacctt cgatcttacc ccgcacaggc
     1681 aaaacgccat ttcgatcctg gcaaccaatc gcccgcgaac gctggtagta gaatcacagc
     1741 gacgcgaaac gatagaactc aacgggcaaa aggtctccgc gatcctgcta aagttaacaa
     1801 cggacgatcc gcagagcgac aagatgcaga ttcgcatgtg ggtcggcgac gactcgcggc
     1861 acttgccctt acgcttcacg gccgtgaccg aactgggtcc cgtgcgcgcc gacctggtga
     1921 ttgttcccgc gacgccacag taagccaccg ataaacactc ttcgaaccga ccatcggaat
     1981 agtgtgaggc agaaacccga ccgtgaggga gggtgcttcc agggcgcgcc gtcaaacagc
     2041 gactgtcgcg aacagtcaag caccctccct cacggtcggg tttctgccta cccttccact
     2101 tcgaaattga caatcatttt caatttgagg catactgcga agtgggccag ttatccggct
     2161 ttgctgagta tcggggaaag ttagattaga gcttctacta tgcttcagtc attcatcatc
     2221 attctgcgcg aaggattcga atcgttcctt ctggtcgcgg tcattctttc ttatcttcgc
     2281 aagtcgcagc agcggcaact ggcgccggca gtttattcgg caatcggtgt cgcgattgca
     2341 atcagcggcg ggctcggtta cctgctcttg aagatgcaaa ccggcagcca ggacgttatc
     2401 gagcagtatc tcggccagcg gcttggtcct tctctcaccg ggttcctcgc gaatgaatcg
     2461 ttgcgcgaag cggtgctcgg cgtcgtcgcg atcgtgatgg ttctgtcgct tgtgatctat
     2521 atgtggcgca ccggaccgaa gttgaaagaa aagatggaag gacggctcgg cgatgtttcc
     2581 gctcgacgtt ctggttggac agcgttcgcg ggagtttttc tcttcaccgt attaacgatc
     2641 agccgcgaag gaatggagac cgcactgctc cttttgcagg ttcgtagccc gcgcctggtt
     2701 tggggagcat tgttgggact tgcggcagcc gccggtatgg cgtgggcgtg ggcccagttt
     2761 ggtcacctga ttaatgtgaa gcgcttcttt caa
//
LOCUS       DASZZE010000317         1928 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_42359, whole genome shotgun sequence.
ACCESSION   DASZZE010000317 DASZZE010000000
VERSION     DASZZE010000317.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1928)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1928)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1928
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42359"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1397)
                     /locus_tag="VHD88_06180"
     CDS             complement(<1..1397)
                     /locus_tag="VHD88_06180"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MtnX-like HAD-IB family phosphatase"
                     /protein_id="HVS21415.1"
                     /translation="MLIPLPMIASAGSLAAGAAGLYYATSAVRSQWLGATDWRGRTDT
                     ASVSLTFDDGPSEDTERILDVLSAYKVRATFFMLGRQVELFPEIAQRIVADGHEVGNH
                     SYSHPLYLFRRPGETRQQLERAQEIIASVTGTEPRFARPPYGVRTPAYFAATRRLGLR
                     TVQWDVAGFDWKKRTASQIAERVLREATGGSIILLHDADSAEKRDRSATVAALPMVIE
                     GLRARGLGVVPLSKLLEPRRERRIGRRNGFGKRRPERQKPIVFLDFDGTITLRDAVDA
                     ILEAFADPRWLAIEEDWRSGRIGSRECLAEQMRLVRATKDQINALLDSVDVDEGLVTL
                     LQTCAAHQVEAHIISDGFDYCIDRILARPSLDLKSILHGVRILSSHMEPTADRWRVDF
                     PSFHQSCGHGCATCKPAMMSLLNRANAPTIFVGDGLSDKYAAASADFVFAKDGLAAYC
                     EEQQIAHARYSNLTNV"
     gene            complement(1417..>1928)
                     /locus_tag="VHD88_06185"
     CDS             complement(1417..>1928)
                     /locus_tag="VHD88_06185"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HVS21416.1"
                     /translation="GPTRMDEVARQLAESRVPMNIVAVAGHDKRARRRLERLKVESPV
                     TLQVLGWTDEVASLMQTASVLVTKPGGLTIAEAALCSLPAVFFDPIPGAEFVNAKRMV
                     DAGAAIITNGAGETAATVISLLRDEPTRRAMSLRAKAMARPDARREIAQLALDLAAPA
                     KEMRRRMTA"
BASE COUNT          404 a          587 c          538 g          399 t
ORIGIN      
        1 acgttcgtga ggttactgta ccgcgcgtgc gcgatttgct gttcctcgca atatgctgcg
       61 agcccgtctt ttgcaaacac gaaatcagcg cttgcggccg cgtatttatc cgatagtccg
      121 tcaccgacga agattgtggg cgcattcgcg cgattcagca aactcatcat tgcgggtttg
      181 cacgtcgcac agccatggcc gcacgattga tggaacgaag gaaaatcaac tcgccaacga
      241 tctgcggtcg gttccatatg gctcgaaaga atccggacac cgtgcaggat cgacttcaaa
      301 tctaacgaag ggcgagcgag aatccgatcg atgcagtaat caaaaccgtc gctgatgatg
      361 tgcgcttcaa cctgatgcgc cgcacatgtt tgcagcagcg taaccagacc ttcatccacg
      421 tcgactgagt cgagcagcgc attaatctga tccttcgttg cgcgcaccag ccgcatctgc
      481 tcggccaaac attcgcgcga gccgatacgg cctgatctcc agtcttcttc gatagccagc
      541 cagcgaggat cggcgaacgc ttcgaggatt gcatcaaccg catcgcgaag cgtgatcgtg
      601 ccatcgaaat ccagaaagac gatcggcttc tgacgctcgg gccttctctt tccgaaaccg
      661 tttcgcctac cgattctccg ctctcttctt ggctcaagta atttcgacag cggcacgaca
      721 cccagcccgc gcgccctcag gccttcgatg accattggaa gcgcagcgac ggttgcgctg
      781 cgatcacgct tctcagcact gtctgcgtcg tggagcaaaa tgatcgaacc gccagtcgct
      841 tcgcgcagca cgcgttcggc aatctgcgac gcagttcgtt tcttccagtc gaatccagcg
      901 acgtcccatt gcactgtgcg caggcccagc cgccgcgtgg cggcaaagta tgcaggagtg
      961 cgaacgccgt atggcggtcg cgcgaaacgc ggctctgtgc cggtgacgct ggcgatgatt
     1021 tcctgcgcgc gttcgagttg ttggcgcgtc tcgcctggac ggcgaaagag atagagggga
     1081 tgcgaatacg aatgattgcc gacttcgtgg ccgtccgcaa ctatcctctg agcaatctca
     1141 ggaaaaagct cgacctgacg accgagcatg aagaatgttg cgcggacctt gtaagcgctt
     1201 agcacgtcca ggattcgttc ggtgtcttca gatggtccat cgtcgaacgt caaagacacc
     1261 gaggctgtat cagtccgtcc gcgccagtca gttgcgccaa gccattgcga gcgcaccgcg
     1321 gatgtcgcgt aatagagtcc ggccgcgccc gccgcgagcg agccagcgct ggcaatcata
     1381 ggaagcggga ttagcatagt cttcagtcgt aagcgttcag gcagtcatcc tgcgcctcat
     1441 ctcctttgcg ggcgctgcaa gatcaagagc aagctgtgcg atttctcgcc gagcatcggg
     1501 tcgggccatt gctttcgcgc gcaaagacat cgcgcgacgc gtcggttcgt cgcgcagcaa
     1561 cgaaatcacc gtcgccgcag tctcacctgc gccgttagta atgattgccg cgccagcgtc
     1621 aaccattcgt ttggcgttaa caaactctgc gccaggtatc ggatcaaaga acacagccgg
     1681 cagagagcac agcgcggcct cagcgatcgt gagtccgccg ggtttcgtca ccagcacaga
     1741 cgcggtttgc atcagggacg cgacctcgtc agtccaccca agaacctgca gcgtaaccgg
     1801 ggattcaact ttcaagcgtt caagccgtcg tcgcgcgcgt ttgtcatgtc ctgcgacagc
     1861 gacgatattc atcgggactc tgctttcagc aagttgccgc gcaacttcgt ccattcgcgt
     1921 cggaccca
//
LOCUS       DASZZE010000318         2095 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_235811, whole genome shotgun sequence.
ACCESSION   DASZZE010000318 DASZZE010000000
VERSION     DASZZE010000318.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2095
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_235811"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1487
                     /gene="cas1"
                     /locus_tag="VHD88_06190"
     CDS             <1..1487
                     /gene="cas1"
                     /locus_tag="VHD88_06190"
                     /inference="COORDINATES: protein motif:HMM:TIGR03983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004520 - DNA endonuclease activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0043571 - maintenance of CRISPR repeat
                     elements [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="type I-MYXAN CRISPR-associated endonuclease
                     Cas1"
                     /protein_id="HVS21417.1"
                     /translation="ESEKWGLTGKVDCLRRRDGMLIPYEHKRGRCARSADNEPEAWAS
                     DRLQVIAYAALVAEHSGQEISEARIRYHADNVMVRVPIDDAAFDDLKKAIARARVLQG
                     SIERPPVTENERLCVKCSLAPVCLPEEARLALLLSELPAAMPEVRQLKLFPADDDRRT
                     LHVLTHGARIGRKGDRLEVSVRGEAPQLHPAQEIGQIVLHGFAQISTQALRFCGQQEI
                     GVHWVTTGGQYMGAWVSGTGSVQRRIRQYRALTDQGLCLQLAVRLAEARARGQLSFLL
                     RSSRETERATPEVQSSIKAIRKLLSPMLRATSIDSLRGYEGSIGAYYFRALPDLIVPE
                     AGEEMKPDGRSRRPPRDRCNALLSFAYALLLKDVTNAIMVVGLDPSLGFFHRPRSQAP
                     PLALDLMELFRVPLVDLPVIASINRKQWDIENDFDMAGQQVWLSDEGRKKLISIYERR
                     KSDYWRHPVVRRSLSYSRIIELEVRLLEKEWMGEGGLFARMRLR"
     gene            1497..1790
                     /gene="cas2"
                     /locus_tag="VHD88_06195"
     CDS             1497..1790
                     /gene="cas2"
                     /locus_tag="VHD88_06195"
                     /inference="COORDINATES: protein motif:HMM:TIGR01573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004521 - RNA endonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0043571 - maintenance of CRISPR repeat
                     elements [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HVS21418.1"
                     /translation="MEAKQWYVICYDISEPKRWRKVYKKLNGYGRRLQYSIFRCRLTR
                     RQIEKLRWELEEMLDASEDRLLILSICEICERHVGLHNRPESWIDDSRPFDFA"
BASE COUNT          475 a          511 c          661 g          448 t
ORIGIN      
        1 ttgaaagtga aaaatgggga ctgactggca aggtcgattg cctgaggcgg cgcgacggga
       61 tgctcattcc ctacgagcac aagagaggac gctgcgcgcg ctctgccgac aacgaaccgg
      121 aggcctgggc cagcgatcgt ctgcaagtca tcgcttatgc ggccctggtt gctgagcaca
      181 gcgggcagga aatcagcgag gcgcgcatac gctatcacgc ggataacgtg atggtgcgag
      241 tgccaattga tgatgcggct ttcgacgatc tcaagaaagc aattgcccgc gcgcgcgtct
      301 tgcagggcag cattgagcgt ccgccggtaa ctgagaacga gcgtctgtgc gtgaagtgtt
      361 cgctcgcgcc cgtttgtctg ccggaagaag cgcgactggc gttgctgctc tctgagctgc
      421 cggcggcgat gcccgaagtc agacagctta agctcttccc tgccgatgat gatcgccgca
      481 cgcttcatgt gctcactcac ggcgcgcgta tcggccgtaa aggcgatcgg ctggaagttt
      541 cagtgagagg cgaagcgccg cagttacatc cggcccagga gattggacaa attgttttgc
      601 acggcttcgc acaaatcagc acgcaggcgc tgcggttttg cggccagcag gagatcggtg
      661 tccattgggt cacgaccggc ggccaataca tgggtgcgtg ggtttccgga accggatcgg
      721 tgcaacggcg cattcggcag tatcgcgctc tgaccgatca aggattgtgt ttgcaattgg
      781 cggtgcgact ggctgaggcg cgtgcgcgag gtcaattgag tttcttactg cggtcaagtc
      841 gagaaacaga acgtgcgacg cccgaagtcc agagttccat caaagcaatt cgcaaactac
      901 tctcaccgat gttgcgcgcg acgagcatcg attctttgcg cggttacgaa gggagtatcg
      961 gagcttatta ttttcgcgcc cttcccgatc tgattgttcc tgaagcgggc gaagaaatga
     1021 agcccgatgg ccgcagtcgc cgtccgccgc gtgaccgttg caatgcgctg ctgtcgtttg
     1081 cttacgcgct actgctgaaa gacgtgacga acgcgatcat ggtcgtcgga cttgatccat
     1141 cgctcggctt ttttcatcgg ccccgctcgc aagcgccgcc gctcgcgcta gacctgatgg
     1201 aattatttcg cgtgccgctt gttgatctac cagttatcgc atcgattaat cgaaagcagt
     1261 gggatatcga gaatgatttt gacatggcag gtcagcaagt ttggttgtcg gatgaagggc
     1321 gaaagaaatt gattagcatt tacgagcggc gcaagagtga ttattggagg catccggtcg
     1381 tgcgccgatc actttcgtac tcacgaatca tcgagcttga agtgcggctg ctggagaagg
     1441 agtggatggg tgaaggcggt ctgttcgcgc ggatgcgatt gcgttgaggc taagcaatgg
     1501 aagcaaagca gtggtacgta atctgttatg acatcagcga gcccaagcga tggcgaaagg
     1561 tctataagaa gctcaacggc tacggacggc gattgcagta ttccatcttt cggtgcagac
     1621 tgacgcgccg gcagatagaa aaactgcgtt gggaactgga agagatgctc gatgcaagcg
     1681 aggatcgcct gctaattctg agcatttgtg aaatctgcga gcggcatgtc ggactccata
     1741 accgaccgga atcctggatt gacgattcgc gaccatttga cttcgcgtga ggggccgcaa
     1801 ggaggggccg caagcatgtg cctccgtaga ctggccggaa gcttgagggc catggggaaa
     1861 cgaaatagag ccgggagtta ggctcggtca cttagttgtt cagatacttg cgtcgatgtt
     1921 aagtgtctga ttcttgggcg attgtcagac gaaaacaagg gcaatcagca ttgagggaac
     1981 gggttgtgag agcaaaacga agagatgcgc gaaaacagac ttgcaagata tagcaaacaa
     2041 gtgggttgaa cccagcgcag tgagaattcc gatgatgccg aaaggcgttg agcac
//
LOCUS       DASZZE010000319         1710 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_269985, whole genome shotgun sequence.
ACCESSION   DASZZE010000319 DASZZE010000000
VERSION     DASZZE010000319.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1710)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1710)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1710
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_269985"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            62..>1710
                     /gene="glmS"
                     /locus_tag="VHD88_06200"
     CDS             62..>1710
                     /gene="glmS"
                     /locus_tag="VHD88_06200"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR01135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004360 - glutamine-fructose-6-phosphate
                     transaminase (isomerizing) activity [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HVS21419.1"
                     /translation="MRNLEEALRQKPLDGTYGIGHTRWATHGRPTEENAHPHRDCTGR
                     VVVVHNGIIENYLQLKDDLRKKDHRFVTETDTEIVAHLIEEHLKSGANFEDAIRKMVS
                     ELRGIFALSMLSADEPDTIISARQGPPVVIGLGDGEYFVASDIPAILQHTRDVFFLGD
                     GEIAVIKKDGVRVTDFAGNPVEPVKQRITWDPIEAEKGGFKHFMLKEIYEQPRAVRET
                     VEGRISLDTGRVFLDEFRELTESDFKRVSSIKIAACGTSLHAGLAGKYMIEQLARVNV
                     DVDYASEFRYRDPVLDENTLLLVISQSGETADTIAALREVKERGVKILSICNVRGSMI
                     TREADGTILTHAGPEIGVASTKAFTSQMIALYLLGLYLGQLRGALSAEESQAHAQQLA
                     ELPVKMERLLSAADAIEELSKEFFRATDFLYLGRGINFPVALEGALKLKEISYIHAEG
                     YPAGEMKHGPNALIDERLPVMFINTREAGNRASELRYEKTHSNIVEVKAREGIVISVL
                     TEGDSMSSVVSDHVIEIPASSDILSPILSIIPLQLLAYHIAV"
BASE COUNT          382 a          502 c          484 g          342 t
ORIGIN      
        1 ggcgggcatc gctgtcgttg acgaaaacca caatctgcaa atccgtcggg ccgaaggcaa
       61 actgcgtaac ctggaagagg cgctgcggca gaaacctctc gacggcactt acgggatcgg
      121 tcacacgcgt tgggccacgc acggccgccc cacggaagaa aacgcgcatc cccaccgcga
      181 ctgcaccggt cgcgtcgtag tcgtacacaa tggaatcatc gaaaactatc tgcaactgaa
      241 ggacgatctg cgaaagaaag atcaccgctt cgttactgaa accgacaccg aaattgtcgc
      301 ccatctgatc gaagagcatt tgaaaagcgg cgccaacttt gaagacgcta ttcgcaagat
      361 ggtatcggag ctgcgcggaa tctttgcgct ttcaatgctg tcggcggacg aacccgacac
      421 gatcatctca gcgcgacagg ggccgccggt ggtcatcggt ctcggtgatg gcgagtactt
      481 cgtcgcttcc gacattccgg caatcctgca acacacgcgc gacgttttct ttcttggcga
      541 tggcgagatc gccgtgatca agaaagacgg tgtgcgcgtg acagatttcg ccggcaatcc
      601 agtcgagccg gtaaagcagc gcatcacttg ggacccaatc gaagcggaaa agggcggctt
      661 caagcatttc atgctcaaag agatttacga gcaaccgcgc gctgtgcgcg agacagtcga
      721 aggccgcatc tcgctcgaca cgggccgcgt ctttctcgac gagttccgtg agctcacgga
      781 atcagacttc aagcgcgtct cttcgatcaa gattgcggcg tgcggcacgt cgttgcacgc
      841 gggcctggcc ggcaaataca tgatcgagca actcgcgcgg gtgaacgtcg atgtcgatta
      901 tgcttctgag tttcgctatc gcgatccggt gctcgatgaa aacactttgc tgctggtaat
      961 ttcacagtca ggcgagactg ccgacacgat cgccgccttg cgcgaagtaa aagagcgcgg
     1021 cgtcaaaatt ctttctatct gcaacgtgcg gggctcgatg atcacgcgcg aagccgatgg
     1081 cacgatcctg acgcacgccg gcccggaaat cggtgtcgcc tcgaccaagg cgttcacttc
     1141 gcagatgatc gcgctctatc tgctgggcct gtacctgggc caactgcgcg gcgcgctctc
     1201 ggcggaagaa agccaggcgc acgcacagca actcgcggaa ctgccggtga agatggagcg
     1261 cttgcttagc gcggctgacg cgatcgaaga gctgtcgaag gagttctttc gcgcgactga
     1321 ttttctctat cttggccgtg gcatcaattt ccccgtcgct ctggaaggcg cgctgaagct
     1381 gaaagaaatt tcgtacattc acgccgaagg ttatccggcc ggggagatga agcacggccc
     1441 gaacgctttg atcgacgagc gacttccggt tatgttcatc aacactcgcg aagcgggcaa
     1501 tcgcgcgtct gagctgcgct acgaaaagac tcactcgaac atcgtggaag taaaagcgcg
     1561 cgaaggcata gtgatttccg tcctgaccga aggcgactca atgtcctcag tcgtctccga
     1621 tcacgtcatc gagattcccg catccagcga catcctctcg ccgatccttt cgatcatccc
     1681 gctccagctt ctcgcttatc acattgccgt
//
LOCUS       DASZZE010000320         3095 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_235846, whole genome shotgun sequence.
ACCESSION   DASZZE010000320 DASZZE010000000
VERSION     DASZZE010000320.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3095
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_235846"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..347)
                     /locus_tag="VHD88_06205"
     CDS             complement(<1..347)
                     /locus_tag="VHD88_06205"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HVS21420.1"
                     /translation="MGRLLLILALCAGVAFGQQGAGSLKGQVSDEFGGVIVGATVVAV
                     NADGVEKTVNTNGEGNFVLNGLAPGKYTIKVMAPGFANYENADVVAIAGRSQQLNVTL
                     KVTIEQQKVTVAA"
     gene            complement(485..1519)
                     /locus_tag="VHD88_06210"
     CDS             complement(485..1519)
                     /locus_tag="VHD88_06210"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HVS21421.1"
                     /translation="MSFANALRILIALAVIASFACRSSQSNQRQLLVYTPHGQDMLRD
                     FVARYKQAHPEVDVQFLDMGSREVLERLRAERNRPQADLWWGAAHTTFQTAADENLLT
                     PFRPSWADKVPEFAREAQNRWYGTYETPEVIVYNSDAVRAEDAPKDWDDVLDPKWRDK
                     VLIRNPNPSDSMRAIFGGMIWRGYKDTNSPDKGYDWLRRLDANVHEYTADGTLLMQKL
                     ARQEGLVSLWDMPDVRLYRDQKNLPVAYNIPTSGTPVVIDCIAIVRGAPHEEEAKRFY
                     EFVTTEESLIHAARNYYRIPVRTDIDRKQLPDWMNVPFTRMPLDWDLLRRQSNEWLRY
                     WDTEIRGRGK"
     gene            complement(1725..1961)
                     /locus_tag="VHD88_06215"
     CDS             complement(1725..1961)
                     /locus_tag="VHD88_06215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21422.1"
                     /translation="MRRLAENQTLTSREFNRAFVLTQYLGYLRRNPNDAPDSDYSGYD
                     FWLTKLNQFNGNFVNAEMVKAFISSTEYRRRFGP"
     gene            2095..2277
                     /locus_tag="VHD88_06220"
     CDS             2095..2277
                     /locus_tag="VHD88_06220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21423.1"
                     /translation="MRHWFLGHFAILWNILQDSHAEKLKGFGEVSRDLAPQLDPEIDQ
                     LVEVVSRVRSLISSSG"
     regulatory      complement(2355..2415)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01734"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Fluoride riboswitches increase expression of
                     downstream genes that help mitigate the toxic effects of
                     very high levels of fluoride; They are found in a wide
                     variety of bacteria and archaea; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="fluoride"
                     /db_xref="RFAM:RF01734"
     gene            complement(2460..>3095)
                     /locus_tag="VHD88_06225"
     CDS             complement(2460..>3095)
                     /locus_tag="VHD88_06225"
                     /inference="COORDINATES: protein motif:HMM:NF015706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21424.1"
                     /translation="VQGRHKKQTGGRGQFGDCKCVFEPLPRGEGFIFEDKIFGGSVPQ
                     QYRPAIEKGIVEAAQSGAIAGYPLVDFKVQLIDGSYHNVDSDEHSFRAAGRKAFRAAM
                     EKVKPALLEPIMDVEIDAPQEFSGDIMGDLNSRRGRVQGMDTRGKQQVVKAQVPMAEM
                     LNYQSTLNSITAARGSFHMQFSHYDPVPGQIAQKIIQQAKDEGRIRGAEED"
BASE COUNT          649 a          854 c          879 g          713 t
ORIGIN      
        1 tcggcggcca ccgtcacctt ctgctgttcg atcgtaactt tcagagtgac attaagctgt
       61 tgactccgac cggcaatcgc tacgacatcc gcgttctcgt agttagcgaa tccaggcgcc
      121 attactttga tcgtgtactt gccgggagcg agtccgttga ggacaaaatt gccttcgcca
      181 ttagtgttga cagtcttctc aacgccgtca gcgttaacag caactacggt tgcgcccacg
      241 atgacgccgc cgaattcgtc ggagacctgc cccttcaatg agcccgcgcc ctgctggccg
      301 aacgccacgc cggcacagag cgcgagaatc aataacagac ggcccattcc agatggttcc
      361 ttagcttatt taataaaagt gggcggtact ctgccttgtt aactaagacg aaggtaggcg
      421 gattttggtt acataagacg aacaatgaga ttgaattgac tgacagaagc ttagactgac
      481 ggaatcactt gcctcgcccg cgaatctcag tgtcccagta acgcagccat tcgttgctct
      541 gcctgcgtaa caggtcccaa tcgagcggca tacgcgtgaa cggaacgttc atccagtcgg
      601 ggagttgttt gcgatcgatg tctgtgcgca cgggaatgcg atagtagtta cgcgccgcgt
      661 ggatcaaact ctcttcggtg gtaacgaatt catagaagcg cttggcttct tcttcgtgcg
      721 gcgcgccgcg cacaatcgcg atgcaatcga tcaccacggg cgtgccgctc gtcggaatgt
      781 tgtaagcgac agggagattc ttctggtcgc gatacagacg cacgtcgggc atgtcccaca
      841 aactgactaa gccttcctgt cgcgccagct tttgcatcag tagggttccg tcggcggtgt
      901 attcgtggac gttcgcgtcg agccttcgca gccagtcgta acctttgtcg ggcgagttcg
      961 tgtctttgta accgcgccaa atcattccgc cgaagatcgc gcgcattgaa tccgacggat
     1021 tcggattacg aatcagaact ttgtcgcgcc actttggatc gagcacgtcg tcccaatctt
     1081 ttggcgcatc ttcagcgcgc acagcgtcgc tgttgtaaac gatcacttcc ggcgtttcat
     1141 aagttccgta ccagcgattc tgtgcctcac gcgcaaactc cggaaccttg tcagcccacg
     1201 aaggacgaaa aggcgttagc aggttttcat ccgcggcggt ttgaaatgtc gtatgcgctg
     1261 cgccccacca aagatcggct tgcggccgat tacgctcggc gcgcaggcgc tcgaggactt
     1321 ctcgcgatcc catgtcgaga aactgaacgt caacttccgg atgggcctgt ttgtatcgcg
     1381 cgacaaaatc gcgaagcata tcctggccat ggggagtgta gacgagcaac tggcgctgat
     1441 tcgattgaga tgatcgacac gcgaaagagg cgataaccgc gagtgcgatt aagattctta
     1501 aggcgttggc aaatgacatt tgcggttagt caaacttaag ttggcggaca tcataacaga
     1561 cttcgccatt cgaacccgct ccacatcgct tgcaaaagca aagaatcggt caatcgaatg
     1621 tggcgtcttg tcttgtgaag agaaaaagga cgcacggatg aaacgtgcgc ccttataatt
     1681 cagaaatgaa ttgatccgga agcttagctg gattgcggtt cgcgtcacgg tccgaagcgt
     1741 cggcgatact cagttgagct gatgaacgct ttgaccatct cggcgttcac gaagttcccg
     1801 ttgaattgat tcagcttcgt cagccagaaa tcatatccgg aataatccga atcaggagcg
     1861 tcgttcgggt tgcggcggag gtagccgagg tattgcgtca gcacgaaggc gcggttgaac
     1921 tcgcggctcg taagggtctg gttctcggcg aggcggcgca cggcgcgcgc gcgggcgagt
     1981 gtgttcgtgg tgtcggcagc gccggagaac tcgtctatgg aagcctgccg ctcggctgcc
     2041 gtcggcgtga gttgtgcgcg ggtgtagagc gcgctagcaa cggaacgtcg agatgtgcgt
     2101 cactggttcc tgggccactt cgccatcttg tggaacattc tccaggactc gcacgcggaa
     2161 aaactgaagg gcttcggtga agtttcgcgc gacctcgcgc cgcagctcga tccggagata
     2221 gatcagcttg tcgaggttgt tagtcgagtg agatctctga tctcatccag cgggtgatcc
     2281 ggtaatgacg acgcaggtga aaccgtcgat gcctgccaaa aataatttgc ccacgttgac
     2341 ttctccgaag gttgaacttg ataggagtca tcagcacgca tgcagttcaa ggcggactcc
     2401 atcgccggtg aaagggattg taacacgggc agatttctaa ttccgtccgc gctcccagct
     2461 caatcttctt ccgcgccgcg aattctgcct tcgtccttcg cttgttggat gatcttctgc
     2521 gcgatctgac caggcacggg atcgtaatgc gagaactgca tgtgaaagct gccgcgcgcg
     2581 gcggtgattg agttgagcgt cgattgatag ttgagcatct cggccatcgg cacctgcgct
     2641 ttgacgactt gctgcttgcc gcgcgtgtcc atgccctgca cgcggccgcg acgggaattg
     2701 agatcaccca tgatgtcacc gctgaattcc tgtggcgcgt cgatctcgac gtccataatc
     2761 ggttccagca gggcgggctt taccttttcc atcgccgcgc gaaaagcttt gcggcctgcg
     2821 gcgcggaagc tgtgctcgtc tgagtctacg ttgtgataag aaccgtcgat tagctgcact
     2881 ttgaaatcga ccaacggata accggcaatc gcgccgctct gcgcggcttc gacgattcct
     2941 ttctcaattg ccggacggta ctgctgcggc accgagccgc cgaaaatctt gtcttcgaaa
     3001 atgaatcctt cgccgcgcgg cagcggctcg aaaacgcact tgcaatcgcc aaactggccg
     3061 cgcccgccgg tctgtttctt gtgccggccc tgcac
//
LOCUS       DASZZE010000321         1919 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_92960, whole genome shotgun sequence.
ACCESSION   DASZZE010000321 DASZZE010000000
VERSION     DASZZE010000321.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1919)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1919)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1919
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92960"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..348
                     /locus_tag="VHD88_06230"
     CDS             <1..348
                     /locus_tag="VHD88_06230"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HVS21425.1"
                     /translation="GFEVDTDAMVGEEFRWLTMKIKDQPGFEIILMEPKAGMMLDEES
                     AAQLRSLIDKGVLGAGVFDTDDIQKTYEELKARGVEFKGPPSVQSWGTATVFKDNSGN
                     WFSLSQHQEEKVA"
     gene            797..>1919
                     /locus_tag="VHD88_06235"
     CDS             797..>1919
                     /locus_tag="VHD88_06235"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HVS21426.1"
                     /translation="MSRRIGFVSSLTVIVLLATAALHFSSSAQKDLPQPLDLLILHGK
                     LVDGSGDKPRTADVGIRGDRIVFIGDSHKSNLTAARTIDATGLVVAPGFIDPHTHTLG
                     DLSNQSRKGNEAYLMQGVTTVVTGNDGGSVLNIGETLRKWDEQGIGTNAILFAGHGTI
                     RGRVLGQTDAQPNAAQLEEMKQLVGQALDEGAFGLSTGLYYSPGSFAKTEEVIELSKV
                     VAAKGGIYDTHMRSESAGLLDSIAETIRIGREAKIPVHISHIKALGPEVWGQSKQAIE
                     MIKKARAAGIQASACQYPYTASGTSLQAALVPRWAEVGGRRELLNRIDDPQIRPRLIA
                     EMEANLKQRGGANSFQLADTANREFVGQRLDAIAKQMNKS"
BASE COUNT          450 a          497 c          582 g          390 t
ORIGIN      
        1 ggattcgaag tcgataccga cgcgatggtc ggcgaagaat ttcggtggct cacgatgaag
       61 ataaaggatc agcccggctt tgaaatcatc ttgatggagc cgaaagcggg aatgatgttg
      121 gacgaggaat cggcggctca attgagatcg ctgatcgata aaggcgtcct gggcgcgggc
      181 gtgttcgata cagatgacat ccaaaagact tatgaagagt taaaggcgcg gggggttgaa
      241 ttcaaggggc caccgagcgt gcaatcctgg ggaaccgcca cagtgttcaa agacaactcg
      301 gggaactggt tcagtttgtc gcagcatcaa gaagagaaag tagcctgatg ctttcagcgc
      361 aacgatgaca aatcggctgc cacgatttct gctcgcggct tctgcggcaa tcctggccct
      421 cggggggcgt ggtccatatg gccgcgttta agaaaggagt ggcgaccgtt gccgcttcca
      481 atctgcctgc attctatgga aatgcgttgt catatcgacg agtggaactg gtggagcttt
      541 agcaacgcgt atatcgccat gcaattgggc gtgattgtga ttggatggtt tctcgcttcg
      601 ctggtaatgt cagcggttgt gcgggggaaa acggcagcgg cttgacctga caggctgctg
      661 aaacactccc tctcccagag gagagggaga aaaaatccaa gactgaggta ttatggcacg
      721 catcgcatcg agatcacttc gctgaaagat atcgatgacg aagtgaagcg ctggttgaaa
      781 gttgcttacg atcgagatgt ctagacgtat cggattcgtt tcgtcgctaa ctgtgatcgt
      841 gttgctggcg acggcggctc tgcatttttc ttcttccgcg caaaaagatt taccgcagcc
      901 actcgatctc ctgattcttc acggcaaact cgtcgatggt tccggcgaca aaccgcgcac
      961 ggccgacgtt ggcattcgtg gcgatcgcat tgtattcatt ggcgattctc acaaatcaaa
     1021 cttgaccgcc gcgcgcacga ttgacgcgac gggtctggtt gtggcgccgg gcttcatcga
     1081 tccgcacacg catacgctcg gcgatctctc caatcaaagt cgcaaaggca acgaagcgta
     1141 cctcatgcaa ggcgtgacca ccgtcgtcac tggcaatgac ggcggcagcg ttttgaacat
     1201 cggcgagacg ctgcgcaagt gggacgaaca aggcatcggc acgaatgcga tcctgtttgc
     1261 gggtcatggc acgattcgcg gtcgcgtgct cggtcaaacc gacgcgcagc caaacgccgc
     1321 gcagcttgaa gagatgaaac agcttgtcgg tcaagcgctg gacgaaggcg cgttcggttt
     1381 gtccaccggc ctgtattact cgccgggaag cttcgcgaag actgaagaag tgatcgagct
     1441 gtcgaaagtc gtcgcggcga aaggcggaat ctacgacacg cacatgcgtt cagagagcgc
     1501 cggcctgctc gattccatcg ccgagacgat tcgcatcggt cgcgaagcga agattccggt
     1561 tcacatctcg cacatcaaag cgctcggccc ggaagtctgg ggtcaaagca agcaagcgat
     1621 cgagatgatc aagaaagcgc gcgccgctgg aatccaggcc agcgcgtgcc agtatcctta
     1681 cacggcatca ggcacgagct tgcaagctgc gctggttccc cgctgggccg aagtcggcgg
     1741 gcggcgcgaa cttttgaacc gcatcgacga tccgcaaatc cgtccgcgct tgatagcgga
     1801 aatggaagcg aacctgaagc aacgcggcgg agcgaatagt tttcaactgg ccgacacagc
     1861 gaaccgcgaa tttgtcggcc agcgacttga tgcgattgcg aagcagatga acaagtcgc
//
LOCUS       DASZZE010000322         4304 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_287474, whole genome shotgun sequence.
ACCESSION   DASZZE010000322 DASZZE010000000
VERSION     DASZZE010000322.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4304)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4304)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4304
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_287474"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1700
                     /locus_tag="VHD88_06240"
     CDS             <1..1700
                     /locus_tag="VHD88_06240"
                     /inference="COORDINATES: protein motif:HMM:NF024371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HVS21427.1"
                     /translation="SDSGKVREIKAWLIRSSGPVKKYGKDNIVDVAEDSNDVYNESRY
                     KLIDGSKDADAGSVFGYQTTTQQKSNFSQDVWKFQDRLPTLVSRYTLALPTAWRAKSV
                     TFNHSAVEPVVSGSTYTWELRDLSPIAPEPNSPHVSSLAPRIAVSYFPPGDTQTIGLR
                     TFATWAEVSRWLSELHDPQAVPDEAMTARVRQLTVDAKTELDRIRAIGRFVHSIKYIS
                     IDIGVSRGGGMRPHAATEVFAKSYGDCKDKVNLMRAMLKVLDIVSYPVAIYAGDPTYV
                     REEWASPHQFNHCIIAVKVSDETQTATVINHPKLGRLLIFDATNNTPVGDLPEQEQGS
                     WALIVAGDAGSLMRMPVTPPESNLLDRQIEANLDAGGSLTATIREKATGQFAAGYRGE
                     YRRASRPEYVKHIEGWVTAGATAARVSKVEPRDDIVADRFDLDVDFVAPAYGQLMQGR
                     LLVFKPAIVSRRESIPLTEAKRKHPVVLDAHSFSETVRVKLPAGFDVDETPDPVKLET
                     SFGSYSTNYEVKDGQLVFTRKLVQRAATIPVEQYNSVRSFYERIRAAEQAPVVLARK"
     gene            complement(1706..4066)
                     /gene="purL"
                     /locus_tag="VHD88_06245"
     CDS             complement(1706..4066)
                     /gene="purL"
                     /locus_tag="VHD88_06245"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: protein motif:HMM:NF002290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HVS21428.1"
                     /translation="MQSITAETIAAHNLTPEEFTRIKDLLGREPNLVELGVFSVMWSE
                     HCSYKSSRVHLKRLPTTGERVIVPPGENAGVVDIGDGWCAAFKIESHNHPSFIEPFQG
                     AATGVGGILRDIFTMGARPIAALNSLRFGSLEDPKNGRRNRSLLAGVVAGIAHYGNAF
                     GVPTVGGEVAFDDAYALNPLVNAFALGLVRKDQIFFGKATGVGNPVLYVGAKTGRDGI
                     HGATMASAEFDEEALEKRPTVQVGDPFLEKLLLEACLEAMRSGAIAGIQDMGAAGLTC
                     STCEMAARAGTGIEIDLSLVPQREMGMTAYEMLLSESQERMLIVAHKGREREVADIFR
                     KWDLDAVVIGRVCDDGRMRVSHNSEIVCDVLVKALTDEAPIYERPMKAGSAAAGSADI
                     LSALSASARTDDSSEASSKGDLTRAALACADRMSALPAYNGALLKLLASPNLASKEWV
                     YRQYDHMVRTNTVVLPGADAAVVRIKETRRALAIALDGNGRYCAANPREGAKLIVAEA
                     ARNVVCVGAQPIAITNCLNFASPERPEVMWSFSEVIDGIAEACKAFNTPVVSGNVSFY
                     NETERHGVLPTPVIGMVGLIEDVRRVIQTGFKNPGDFIALLGATRDDLSISEYGVSVE
                     GKGADELINNGQVPALDLEAERSVQTACLRAAEAGLLRSAHDCSDGGLAVALAECCFS
                     SLNREAFGADIDITGEYDVATRLFSETPSRIIISFDESALGDIEEIVAAAGCPMTLLG
                     NVGSDRLRIESDGEEVIQLGVAEMENAWRSALKQKLQAEVLAAGAE"
BASE COUNT          936 a         1278 c         1179 g          911 t
ORIGIN      
        1 agagtgatag tggaaaagtg cgtgagatca aggcctggct cattcggtcg tcgggacctg
       61 tcaagaagta cgggaaagat aacatagttg acgtggccga ggattcaaat gacgtctata
      121 acgaatcgcg ttataaattg atcgacggct cgaaggacgc ggacgcaggg tccgtattcg
      181 gctatcaaac aacgacgcag cagaaatcaa atttttctca ggatgtctgg aaatttcaag
      241 accgccttcc aactctggtt tcgcgttaca ctctcgcgct gccaacggcc tggcgtgcga
      301 agagcgtgac ttttaatcac tctgcggttg agccagtcgt tagcggtagc acctacacct
      361 gggagttgcg cgatctctca cctattgcgc cggagccaaa cagtccacac gtatcaagcc
      421 tcgcgccgcg aattgcggtc agctattttc cgcccggaga cacccaaaca attggcttaa
      481 ggaccttcgc gacgtgggcc gaggtctcgc gctggctgag cgaattgcac gatccgcaag
      541 ccgttcccga tgaagcgatg actgccagag tgcgccaact caccgttgac gccaaaaccg
      601 agttggatag gattcgcgcg atcgggcgct ttgtccacag tatcaagtac atatcgatcg
      661 atatcggcgt cagccgtggt ggaggtatgc gtccccacgc ggccacagag gtctttgcaa
      721 aatcgtatgg cgactgcaaa gacaaggtga acttgatgcg cgctatgctc aaggtgcttg
      781 acatagtttc gtacccggtc gcgatctatg cgggcgatcc cacctatgtg cgcgaagaat
      841 gggcctcgcc gcatcaattc aatcattgca tcatcgccgt caaagtaagc gacgaaactc
      901 agaccgcaac cgttatcaat catcccaagc tgggccgact gctaatcttt gacgcgacca
      961 acaatacgcc ggtaggggat cttccagagc aggaacaagg cagttgggcg ctaattgttg
     1021 cgggcgatgc aggttcgcta atgcgaatgc ctgtgactcc gccagaatcg aacttgcttg
     1081 atcggcagat tgaagcgaat cttgacgcgg gcggatcgct caccgcgacc attcgcgaaa
     1141 aagctaccgg ccaattcgct gccggctatc gcggcgagta tcgtcgtgcg tcacgaccag
     1201 aatacgtcaa acacatcgaa ggctgggtga cggccggagc aacagcggcc agagtcagca
     1261 aggtcgaacc gcgcgatgat atcgtcgctg accgcttcga tctggacgtg gattttgtgg
     1321 cgcccgccta cggccagttg atgcagggtc gcttgctggt tttcaagccg gcgattgtct
     1381 cgcgtcgcga atcgattcca ctaactgaag cgaagcgcaa acatccggtg gttctcgatg
     1441 cacactcttt ttcagagacc gtgcgggtca agttgcctgc gggatttgac gtggatgaaa
     1501 cacctgatcc ggttaagctt gaaacctcat tcggctctta ctctacgaac tacgaggtca
     1561 aggatggaca gttggttttc acgcgaaagc tggtgcagcg cgccgcaacc attccagtcg
     1621 aacagtacaa ctcagtgcgg agcttctacg agcgcattcg cgcggctgaa caggcgccgg
     1681 tggtattggc aagaaaataa gagtctcact cagctccggc cgccaagact tctgcttgta
     1741 gtttctgttt cagtgccgaa cgccaggcgt tttccatttc ggcgacgcct agttgaataa
     1801 cttcctcgcc atcgctttca attcgcaaac gatctgaacc gacgttgccc agcagcgtca
     1861 tcgggcaacc ggccgcggcg acgatctctt cgatgtcgcc cagcgccgat tcgtcaaaac
     1921 tgataatgat gcgcgaaggc gtttcgctga acagacgcgt ggccacgtcg tactcgcccg
     1981 tgatgtcgat gtcggcgccg aacgcttcgc gattgagtga agagaaacag cattccgcca
     2041 gcgccactgc caagccgccg tccgaacaat catgcgcaga gcgcagcagg cctgcttccg
     2101 ccgcgcgcaa gcaagccgtc tgcaccgacc tttcggcttc gagatcgagc gccggcactt
     2161 gaccgttatt gatcaattcg tccgcaccct tgccttcaac gcttacgccg tattcgctga
     2221 tcgatagatc gtcgcgcgtc gcgcccagca gcgcaatgaa gtcgccggga ttcttgaagc
     2281 cggtttgaat gacgcgcctc acatcttcga tcagtccgac catcccgatt accggcgtcg
     2341 gcagaacgcc gtgcctttcg gtttcgttgt agaacgaaac gttgccggaa acgacgggcg
     2401 tgttgaatgc tttgcacgct tcagcaatac cgtcgatgac ttccgaaaac gaccacatca
     2461 cttcaggacg ctccggcgaa gcaaagttca ggcaattcgt aatcgcgatc ggttgcgcgc
     2521 cgacacagac gacgttgcgc gcggcttcgg cgacgatgag cttcgcgcct tcgcgaggat
     2581 ttgccgcaca gtaacgaccg ttgccatcaa gcgcgatcgc cagcgcgcgc cgcgtctcct
     2641 ttatccgcac caccgcggca tcagcacccg gcagcacgac cgtgttcgtg cgcaccatgt
     2701 gatcgtactg gcgatagacc cattccttgg aagcgaggtt gggcgaagcg agcaacttca
     2761 ggagcgcgcc gttgtaagct gggagcgcgg acatcctgtc cgcacacgcg agcgcagctc
     2821 gcgtcaaatc accttttgaa gatgcctctg acgaatcatc tgttcgcgct gacgcgctca
     2881 atgcggacag gatgtccgcg ctcccagcgg cggcgctccc agctttcatc ggccgttcat
     2941 aaatcggcgc ttcatcagtc aaagctttaa ccagaacgtc acaaacgatt tcgctgttgt
     3001 gactcacgcg catacgtccg tcgtcacaca cgcgaccgat gacgactgcg tcgaggtccc
     3061 acttgcgaaa gatatcggcg acttcgcgct cgcgcccttt gtgcgcgacg atcagcatgc
     3121 gttcctgcga ttccgagagc agcatctcat aagccgtcat gcccatttcg cgttgcggca
     3181 ccagcgacaa atcgatctcg atgccggtgc ccgcgcgggc cgccatttca cacgtcgagc
     3241 aagtcagccc ggccgcgccc atgtcctgga tgccggcaat tgcgccgctg cgcattgctt
     3301 ccagacaggc ttccaacaga agcttttcca aaaaaggatc gccgacttgc acagtcggac
     3361 gtttctccag cgcctcttca tcaaactcag ccgaggccat cgtcgcgccg tgaatgccgt
     3421 cgcgtccggt cttcgctccg acatacagaa cgggattgcc cacgccggtg gctttaccaa
     3481 aaaagatttg atctttgcgc accaggccga gcgcgaaagc attcaccagc gggttcaacg
     3541 cgtatgcgtc atcgaacgcg acttcaccgc cgacagtggg cactccgaac gcgttgccat
     3601 aatgcgcgat gccggcgact acgcctgcga gcagggaacg attacgtctc ccattttttg
     3661 gatcttccaa cgatccgaat cgcaggctgt tgagcgccgc aatcgggcgt gcgcccatcg
     3721 tgaagatgtc gcgcaagatt ccaccgacac cagtggccgc gccctgaaac ggttcgatga
     3781 aactggggtg attgtgcgat tcgatcttga acgcggcgca ccaaccgtca ccgatatcca
     3841 cgacaccggc gttttcaccc ggcggcacga tgacgcgctc acccgtggtc ggcagccgct
     3901 tcagatgaac gcgcgaagac ttgtacgaac aatgctccga ccacatcacc gaaaagacgc
     3961 cgagttcgac caggttcggt tcgcgtccga gcaggtcttt gatgcgcgtg aattcttcag
     4021 gagtgaggtt gtgcgcggcg atggtttcgg cggtgattga ttgcatgact ttcgaacggc
     4081 gtcgcggcag aggtgtttgt ctttagctcc gttaggagcg tgatatttat agctcctcga
     4141 caaccctctt aagcaactcg gcgcggcatc atcgtcatga tgccgcgccg agtcaaacat
     4201 tcattcctct agaggcgggt ctataaatat tccgctcctg acggagctta gagactcttg
     4261 tccaattatt accaaccttc ttgcattatc ccttcaaggt tacc
//
LOCUS       DASZZE010000323         1767 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_76497, whole genome shotgun sequence.
ACCESSION   DASZZE010000323 DASZZE010000000
VERSION     DASZZE010000323.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1767)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1767)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1767
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76497"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1342)
                     /gene="asnB"
                     /locus_tag="VHD88_06250"
     CDS             complement(<1..1342)
                     /gene="asnB"
                     /locus_tag="VHD88_06250"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HVS21429.1"
                     /translation="MCGIAGLIGQNPEARIGAMLQSIEHRGRDDEGVWVSDLIDADGG
                     QRPPLNEAGARRVCFGHRRLSIIDTSSAGHQPMISHDGRLVVILNGEIYNYRELREQL
                     TIKGHAFRTQTDTEVLLAAWAEWGEDCLPLLNGMFAFALWDERERTLFLVRDRVGIKP
                     LYYAQPGQKPDREGGRSASGSLVFASEIKSILASGLLKAELDTEALHQFLTFLWAPDP
                     NTLFRGIKTVPPGHIVTLRGNDLKVRQWWDISFDAIEEGRSETWWQEQVLETLDRVVK
                     LEMVADVPLGSFLSGGIDSSSIVAMMKRHSNGRRIGTYTIGIEAEDLRYDIIPDDVEW
                     ARRVNQQLDTDYHEIMLKPEVAELLPKLVYHMDEPAIDMAIPSYLVSRAARETLTVML
                     SGMGGDEVFAGYPRQIAMKVAGAIDPLPDLLRRPLMKTLEHVLPGGLPGKLTAPL"
BASE COUNT          372 a          520 c          497 g          378 t
ORIGIN      
        1 gcaacggcgc ggtcagtttt cccggcaagc cgccgggcag cacatgttcg agcgtcttca
       61 tcagcggacg ccgcagaaga tcgggcaaag gatcgatcgc gcccgcgact ttcatcgcaa
      121 tctgccgcgg atagccggcg aaaacttcgt caccgcccat gcccgaaagc atcacggtca
      181 aagtctcgcg cgccgcgcgc gataccagat agctgggaat cgccatgtcg atcgccggct
      241 cgtccatgtg atagacgagc tttggcagta gctcggcgac ttcaggcttg agcatgatct
      301 cgtgatagtc agtgtcgagt tgttgattga cgcgccgggc ccactcgaca tcatcgggaa
      361 taatgtcgta gcgaagatcc tccgcttcga ttccgatcgt gtaggtgccg atgcgccggc
      421 cattgctgtg gcgcttcatc atcgctacga tcgacgaaga gtcgatgcca ccggaaagaa
      481 acgatccgag cggcacgtcc gcgaccatct cgagcttgac aacgcgatcg agtgtttcca
      541 aaacttgctc ttgccaccac gtctcgcttc ttccttcttc aatcgcgtcg aatgaaatgt
      601 cccaccactg ccggaccttc aaatcgtttc cgcgtagcgt cacgatgtgg ccgggcggga
      661 ccgttttgat tccgcgaaac agcgtgttcg gatccggtgc ccacaaaaac gtcagaaact
      721 ggtgcagagc ttcggtgtcg agttctgctt tgagcaggcc gctggcgagg attgatttga
      781 tctcggaagc gaagacgagt gaaccgcttg cgctgcgccc tccctcacgg tcgggcttct
      841 gccccggttg agcgtaataa agcggcttga tgcctacgcg atcgcgtacc agaaagagcg
      901 tgcgttctct ctcgtcccac agcgcgaaag caaacatgcc gttcaagagc gggagacaat
      961 cctcgcccca ttccgcccac gcggccagca gaacttcggt gtccgtctgt gtgcgaaaag
     1021 cgtggccttt gatggtgagt tgctcacgca actcgcgata attgtaaatt tcgccgttaa
     1081 gaattacgac caggcgtccg tcgtgagaaa tcatcggctg gtgtccggcg ctgctggtgt
     1141 cgatgataga caaacgccgg tgaccgaaac agacacgccg cgctccggct tcgtttagcg
     1201 gcgggcgttg cccgccgtca gcatcgatca gatcagacac ccacacacct tcgtcgtcgc
     1261 gcccgcgatg ctcgatgctt tgaagcatcg cgccgatgcg cgcttcagga ttttggccaa
     1321 tcagtccggc gattccgcac ataggtcttg atcgttactc gatctctcct atgacttata
     1381 atagcgcgcg cttcggacaa gtcgagccga ggaacagaat ccgtcggatt tcgatgtaag
     1441 ctcattaata ccttgcttca gggagggtgg agcgagacga cgtttaggaa gtcagtgcca
     1501 cccgcgtgag cgggtgggtt caaagggggc cgcatcgacc cgcccgctta cgcaggcggt
     1561 actgactgcg tcacgcagac aagattagag cgcgaatgaa aagcgatgac accaaaaccg
     1621 taacgggccc cgaactctct atcaagaacc cgccatcgcg tcgctctcga ttggcaattt
     1681 gtcttctaat cttcctctct gctttcggcg tgcggctctt gtcctggcat gatacacgtc
     1741 ttgaagttgg aaaagtacag accgcag
//
LOCUS       DASZZE010000324         3111 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_321401, whole genome shotgun sequence.
ACCESSION   DASZZE010000324 DASZZE010000000
VERSION     DASZZE010000324.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3111)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3111)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3111
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_321401"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            333..1049
                     /gene="lepB"
                     /locus_tag="VHD88_06255"
     CDS             333..1049
                     /gene="lepB"
                     /locus_tag="VHD88_06255"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: protein motif:HMM:TIGR02227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HVS21430.1"
                     /translation="MFGKQFSQPPPFGTIHVDDDRDIEVQRPRDAARKHLWQESRLLF
                     RDLIFALMLLALVMVFIVQPVKVEGTSMLPYLHDGERIFVNKLVYYDDYRWAPKIYRG
                     DIVVFWFPEDPSKSYIKRVIGLPGDTVEMHEGRVRVNSKDLDETYLDPQFNMARTNRP
                     PTYVKPGYYFVMGDNRDNSSDSRIWGLVPKKYVYGKALFRYWPLGNATVISRDTHNTA
                     VPPGANYRRDAVNVPDSDDR"
     gene            1057..2409
                     /locus_tag="VHD88_06260"
     CDS             1057..2409
                     /locus_tag="VHD88_06260"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HVS21431.1"
                     /translation="MTDWLRLLAMIVYAPVRGMREARDRGALGPAVVCAYVIQVAYIF
                     LVQWLAGDHSMLRLGPAALVGMLFQGVAPILTVAVVVVPLATLIANLFDRRGSFSVVL
                     QQEYGSLASVAFYVLTGASVVTILIATFFHFSGIQAAYISSAVQSQDSEQMRAMTQWL
                     RLSADQIAQLKAQLNDPIYISMNLFGMMWFPLLAIGGFAAVREVFRVSVFRSLAILLL
                     TSLASLPLSFILYPVFGRIVGSPFLLLFAFFLLRGYFSSIVSTQRARTAFKQNLEAAT
                     INPRDSSAHYNVGLIHQQRGELDQARERFHRAIDIDTDELDAHYQLGRIARAQNRLPE
                     AIGHFEQVVLRDQSHSQHELWREIGATYIAAGQYSDARDTLERFMDRRQNDPQGLYLM
                     GRAHAGLGDQQEAASSMQACIEAVKTAPAYKYRAEKRWLNEAQQFLKGRKQEAVGSRQ
                     "
     gene            2586..>3111
                     /locus_tag="VHD88_06265"
     CDS             2586..>3111
                     /locus_tag="VHD88_06265"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HVS21432.1"
                     /translation="MAETNTNPAKLVRGLTLVDATMIVMGSMIGSGIFITSAESSRLV
                     GSPGWLLAAWALAGVMTITGALCCAELAAMMPRAGGQYVFLGKAYSPGTGFLFGWSLF
                     LVIQTGTIAAVAIAFANFTGVLTDSISATRYIIQPFVVVPNFTVGSFNLGGYALSLST
                     QQLLAIVMILILTAT"
BASE COUNT          647 a          868 c          880 g          716 t
ORIGIN      
        1 atgaaacagc gcatccacag cctgctcggc tttcaatttc gggatgccgg tgcgttcggc
       61 aagacgattg atgatatcga gtttgatcac ggtcttcgct ctccgctaaa gcaacggctc
      121 gcgccggcga cttaacattc aaatgtttgt taacgcgtgg gatgatagaa agccgaacta
      181 acgactgtca agtttttgcg cgacgtgact gccaagcacc gatacagcag cctggtttga
      241 caaggcaagc aaacgacgga taacctcgat tgtaaaggcg gcacaatgaa cgatcgttca
      301 gccatcgttc aaaggccgcc gtcttaaaga agatgttcgg aaagcaattc agccagccac
      361 cgccgttcgg caccattcac gttgacgacg atcgcgacat cgaagtgcag cgtcctcgcg
      421 acgccgcgcg caaacatttg tggcaggaat cccgcctgct gtttcgcgat ctgatcttcg
      481 cgctgatgct tctggcgttg gtgatggtat tcatcgtgca gccggtgaag gtcgaaggca
      541 cgtcgatgct cccgtatctg cacgacggcg agcgcatctt tgtaaacaag ctggtctatt
      601 acgacgacta tcgctgggcg ccaaagattt atcgcggcga catcgtcgtg ttctggtttc
      661 ccgaagaccc ttcgaagagc tatatcaagc gcgtgattgg cctgccgggc gacacggtcg
      721 aaatgcacga gggccgcgtg cgcgtgaaca gcaaagattt ggacgaaacc tatctcgatc
      781 cgcaatttaa catggcgcgc accaaccggc cacccacgta tgtaaagccc ggatactatt
      841 ttgtgatggg cgacaaccgc gacaactcga gcgactcgcg catctggggt ttggtgccaa
      901 agaaatatgt ctatggcaag gcgctgtttc gctattggcc actcggaaac gcgaccgtga
      961 tttcacgcga cacgcacaac actgcggttc cgccgggcgc gaattaccgg cgcgacgccg
     1021 tgaatgtccc cgattcggat gatcggtgaa gtagtaatga ctgattggct gcgacttctg
     1081 gcaatgatcg tctacgcgcc cgtgcgcgga atgcgcgaag cgcgcgatcg cggtgctctc
     1141 gggccggcgg ttgtttgcgc gtacgtgatc caggttgcgt acatcttttt ggtgcagtgg
     1201 ctggcgggtg atcactcaat gctgaggcta ggtccggccg cactcgtcgg tatgctgttc
     1261 caaggagttg cgccaattct caccgtggcc gttgtggtcg ttccgttggc gacgctaatc
     1321 gcgaacctgt tcgatcgccg gggcagtttc agcgtggtgc ttcagcagga gtacggctca
     1381 ctggcctcgg tcgcgttcta cgtgctcacg ggcgcgagtg tagtgacgat tctcatcgcg
     1441 acgttctttc attttagcgg aattcaggcc gcttacattt ccagcgccgt acagtctcaa
     1501 gactctgaac aaatgcgcgc gatgacgcaa tggcttcggt tgtcggcgga tcaaatcgct
     1561 caactcaagg cgcaactcaa cgatccgatt tatatctcaa tgaatctttt cgggatgatg
     1621 tggtttcctc tattagccat cggtgggttc gcggctgtgc gggaggtctt tcgagtttcg
     1681 gtgtttcgct cgttggcgat cctgttactc accagtctgg caagtttgcc gctatcgttc
     1741 attctgtatc cggtgtttgg caggattgtc gggtcgccat tcctgctgct tttcgcgttc
     1801 tttctgctgc gcggttattt cagcagcatt gtcagtactc aacgcgcgcg cacggctttc
     1861 aaacaaaatc tggaagcagc gacgatcaac ccgcgcgact cgtccgcgca ttacaacgtc
     1921 ggcttgattc atcagcagcg cggcgaactg gatcaggcgc gtgagcgctt tcaccgcgcg
     1981 atcgacattg atacggacga gttggacgcg cattatcagc tcggccgcat cgcccgcgcg
     2041 cagaatcgtc ttccggaagc catcggacat ttcgagcaag tcgtgctacg cgatcagtcg
     2101 cattcacagc acgagctctg gcgcgagatc ggcgcgactt acatcgccgc cggacaatac
     2161 agcgacgcac gcgacacgtt ggaaagattt atggatcgtc ggcagaacga tcctcaaggg
     2221 ctgtatttga tgggtcgcgc gcacgccggc ctcggcgacc aacaggaagc ggcgagttca
     2281 atgcaagcct gcatcgaagc cgtcaagacc gcgcccgctt acaagtaccg cgccgaaaag
     2341 cgctggctga atgaagcaca gcaattttta aaaggcagga agcaagaagc agtaggcagt
     2401 aggcagtagg cagtaggcag cgaacgatct caccccggca gttttcgtca acgcaggatc
     2461 gcacgtcaaa gtcgcgcgcg cgacttcgtc agcgttgccg gtgactacct caatctttaa
     2521 ttcgtcacca ctcagaaaat tccatttgac tttatgatcc aatcgcgata gtaagcgcga
     2581 atatcatggc cgaaactaac actaatcccg ccaagctggt ccgcggtttg accctggtcg
     2641 atgcgacgat gatcgtgatg ggctcgatga tcggatcggg catcttcatt acttccgcgg
     2701 aatcttcgag gctcgtcggc tcgcccggct ggttgttagc ggcgtgggca ctcgccggcg
     2761 tgatgacgat caccggcgcg ctgtgttgcg ctgaactggc ggccatgatg ccgcgcgcgg
     2821 gcgggcaata tgtttttctc ggcaaagctt acagcccagg caccggcttt ctgttcggct
     2881 ggtcgctctt tctcgtgatc caaacgggca cgattgccgc agtagcgatc gcgtttgcca
     2941 atttcaccgg cgtgctcacc gacagtatct ccgccacgag atacatcatt caaccatttg
     3001 tagtggtgcc gaactttacc gtgggttcgt tcaatttggg cggttacgca ctcagcctct
     3061 cgacacaaca gctcttggcg atcgtgatga tcctcattct taccgcgaca a
//
LOCUS       DASZZE010000325         4592 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_93125, whole genome shotgun sequence.
ACCESSION   DASZZE010000325 DASZZE010000000
VERSION     DASZZE010000325.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4592)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4592)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4592
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93125"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1032)
                     /locus_tag="VHD88_06270"
     CDS             complement(<1..1032)
                     /locus_tag="VHD88_06270"
                     /inference="COORDINATES: protein motif:HMM:NF012879.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HVS21433.1"
                     /translation="MTTSIRGLVTLSLGILVFTTGAFAQAPQATPPPPTEPHSVAFPK
                     PVEKTLPNGLRVVVVPRPQMPLVTAQLLIKSGGEVDPSELSGAADMTAALLTRGTTTK
                     SATQIAEAIEALGGSLNSGAGWDSSAITTSVMSSRIGPAMEILADVVRNPSFKDEEID
                     RLRRQYLNNLRVALGTPGSIARFVAARVVYRDAPYGHPLSGTPESLPRIKRDDIVKLH
                     DTFYRSDNAILIIGGDITAENGFALAQKYLGDWPKATSELPRTAVTTPASEPGNRRIL
                     VIDKPDAGQTAVLAARSGINRGSPDYFRGIVANSVLNGYSGRLNWEIRVKRGLSYGAG
                     SGLDMRRWAG"
     gene            complement(1022..2446)
                     /locus_tag="VHD88_06275"
     CDS             complement(1022..2446)
                     /locus_tag="VHD88_06275"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HVS21434.1"
                     /translation="MRRRFLLILTSCVVLLGAIGVASAQTKLPRMNFRERTLPNGLRV
                     LSVVDKSSPTVTINVWYHVGSKDDPDHRSGFAHLFEHIMFKSTKNMKAEMMDRLTEDV
                     GGTNNAFTQDDVTVYYEVVPSNYLETLLWAEAERLSGLTVDEENFHSERAVVEEEYRQ
                     SILAPPYGRFYYVLDQKSFTAHPYKRPTIGSIEDLDAATIENVRKFHDTYYRPDNATL
                     IVVGDFEPKQLDAWVDKYFAQIQKPNLSLPRVQVSEPARTGEKRFVEYGPNVPLKAVG
                     ITYLVPSEKSEDAAALTMADIILSQGRSSRLYQSLVYQQQVAQSVNANADLREDAGLF
                     DLTAIVATGKKPEDAESSLRAEIKKLQDNPVSAAELEKAKNQIVTSQLRQRETSLGKS
                     QALGRATVLLGDANRVNTELEHLQAVIAADVQRVAKKYFTDQNRYVFYYLPESERPNA
                     KTSRLSTVVDQAKGAQANEKEHDH"
     gene            complement(2561..2857)
                     /locus_tag="VHD88_06280"
     CDS             complement(2561..2857)
                     /locus_tag="VHD88_06280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21435.1"
                     /translation="MPDANRFTIICPCCEATMNIDAQTGAILAHEEKHKPVAAFEDMV
                     KDLDKQKQTREQIFSQELSSMKDRGRLLEEKFQEAMKRADKDKDKVYHNPLDLD"
     gene            complement(2941..4155)
                     /locus_tag="VHD88_06285"
     CDS             complement(2941..4155)
                     /locus_tag="VHD88_06285"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HVS21436.1"
                     /translation="MILDGLGVNIHFTDPQPGEIKMLADAGFRWVRMDFKWDATEKQR
                     GLYDFSAYDRLMTALEPFHIRALFILDYGNPLYDNGAPPRTESARQAFVRWAAAAAKT
                     FSGRGVIWEVYNEPNLATFWPPRPNVDEYIALALAVGRAFRSEVPNEKLIGPATSGID
                     FPFLEACFKAGLLDYWSAVSVHPYRRSDPEAAANDYCRLRKMIAVYRTRSYRTRSGSD
                     GVVTQAKDVPIISSEWGYSSVWRGMSDEKQGEMFAREMLTNIANYIPISIWYDWRDDG
                     LDPNEPEHNFGLVRNSYQDGRDQVFEPKPAYLAAKTLSECFHGYAYQRRLSVGSESDY
                     VLVFGKGDELHIAAWTTSGSAHRVVIQINEGHFKITRHTGESAGLTTSGPQGLELTIS
                     NATLYLAQQPAL"
     gene            complement(4323..>4592)
                     /locus_tag="VHD88_06290"
     CDS             complement(4323..>4592)
                     /locus_tag="VHD88_06290"
                     /inference="COORDINATES: protein motif:HMM:NF013786.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008897 - holo-[acyl-carrier-protein]
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase superfamily
                     protein"
                     /protein_id="HVS21437.1"
                     /translation="AFFNCWTRKEAYIKARGEGLSLPLDQFDVAFAPDARPALLDNRN
                     DRSEISRWLFNELRPASGYKAAIAIERGFSRLLLWNFDSRPERDS"
BASE COUNT          968 a         1307 c         1261 g         1056 t
ORIGIN      
        1 acccgcccag cggcgcatgt ccaatccact gccggcgcca taactcagac cgcgcttgac
       61 gcgaatctcc caattcaaac ggccggaata accattgagc acggagttcg caacaatgcc
      121 gcgaaaatag tcagggctac cacgattaat tcctgagcga gccgcaagta cggcagtctg
      181 tcccgcgtcc ggcttgtcga tgactagtat gcgtcgattg ccaggctcgc ttgctggagt
      241 cgtcactgcc gtgcgcggca attccgaagt cgcctttggc cagtcgccca gatatttttg
      301 cgcgagagca aaaccgttct cggcggtgat gtcgcctccg atgatcagga tcgcattgtc
      361 ggagcgatag aaagtgtcgt ggagtttgac gatgtcgtcg cgtttgatgc gcggcaacga
      421 ttcgggcgtg cccgaaagcg gatgaccgta cggcgcatca cgatagacaa cacgagccgc
      481 gacaaaacgc gcaatcgaac ccggcgtacc caacgccact ctcaagttgt tgagatactg
      541 tcgccgcagc cgatcgattt cttcgtcttt gaagcttgga ttacgcacca cgtcagcgag
      601 aatctccatc gccggcccta ttcgcgacga catcacgctg gtggtaatcg cagaagagtc
      661 ccagcccgcg ccggagttca gtgaaccacc gagcgcttcg atagcttccg caatctgcgt
      721 cgcgcttttc gtcgtcgttc ctctagtgag caacgccgcc gtcatgtccg ccgcgcccga
      781 caattcggac ggatcgactt cgccgccgct tttgatcaga agctgcgccg tgaccaaagg
      841 catctgcggc ctcggaacga ccactacgcg caagccgttg ggcagagtct tctcaaccgg
      901 ctttgggaaa gcaactgagt gcggctcagt cggcggcgga ggtgtggctt gcggcgcttg
      961 cgcgaaagcg ccggtcgtga acacgagaat tcccaacgaa agagtaacga ggcctcgaat
     1021 gctagtggtc atgctccttt tcatttgcct gcgctccttt cgcttgatcg accacggtgc
     1081 ttagccgcga tgtctttgcg tttggtcgct cagattccgg caggtagtag aaaacgtaac
     1141 gattctgatc cgtgaaatac tttttcgcca cgcgctgcac atcggcggct atcactgcct
     1201 gcaagtgttc gagttcagtg ttgactcgat tcgcatcacc cagcagaacc gtggcgcggc
     1261 ccagcgcctg actcttgccg aggctggttt cgcgttggcg caattgactg gtgacgattt
     1321 ggttcttcgc tttctccagt tccgcagccg acacgggatt gtcttgcagc tttttgattt
     1381 cggcgcgcag cgagctttca gcatcttccg gtttcttgcc ggtcgcgacg atggccgtca
     1441 agtcaaacag tccggcatct tcgcgcaagt cggcattggc gttgacgctc tgcgcgactt
     1501 gctgttgata cacgagcgat tgatacaacc gcgacgaacg cccttgcgaa agaatgatgt
     1561 cggccatcgt caatgccgcg gcatcttcac tcttctctga cggaaccaaa taagtgatgc
     1621 caacggcctt cagcggaacg ttaggaccgt attctacgaa gcgtttctca ccagtgcgcg
     1681 ccggttcgct gacctgcacg cgcggtagtg acagattcgg tttttgaatc tgagcaaaat
     1741 acttatcgac ccaggcgtcg agctgcttcg gctcgaaatc accgaccacg atcagcgtcg
     1801 cgttgtcagg ccgatagtac gtgtcgtgaa acttgcggac gttttcgatc gttgcggcgt
     1861 caaggtcttc gatgctgccg atcgttgggc gcttgtatgg atgcgcggtg aacgatttct
     1921 gatcgaggac gtagtagaag cgaccgtagg gcggcgccag gatgctctgc cgatattctt
     1981 cttcgacaac ggcgcgttcc gagtggaagt tctcttcgtc aacggtcaag cccgacagac
     2041 gttcggcctc tgcccacaag agcgtctcaa gataatttga cggcactacc tcgtaataga
     2101 ccgttacgtc gtcctgcgtg aacgcgttgt tggtgccgcc cacatcttcg gtcaaacgat
     2161 ccatcatctc ggccttcatg ttcttcgtcg atttgaacat gatgtgctca aagaggtgag
     2221 cgaatccgct gcggtgatcg ggatcatcct tagatccgac gtgataccaa acattaatcg
     2281 tcacggtcgg gcttgactta tccacgacgc tgagcacgcg caggccattc ggcaaagtgc
     2341 gctcgcgaaa attcattcgc ggcagcttcg tctgcgcgct cgcaacgcct atcgcgccga
     2401 gcaaaaccac gcagctagtt agaatcaaaa gaaaacgacg tcgcatactc attagctcct
     2461 atcttgattc cctccacttt tgggggaggg ttagggtggg ggtgctgtgc ccctcttgct
     2521 ctttgctctt gtgccttttg tgcctctttg tggcttgccc tcagtccaaa tccaacggat
     2581 tgtgatagac cttgtccttg tctttatccg cgcgcttcat tgcttcctga aacttctctt
     2641 ccagcagccg cccgcgatct ttcatcgagc taagttcctg cgagaagatt tgctcgcgcg
     2701 tttgcttctg cttgtcgaga tctttgacca tatcttcgaa cgcagccacc ggcttatgct
     2761 tttcctcgtg cgcgagaatt gcgccggttt gcgcgtcgat gttcattgtc gcctcgcaac
     2821 agggacagat aatcgtgaaa cggttcgcat ccggcatgac ttttctccgc gccactcgtt
     2881 gagcgccaaa acggaagagg ccacatgata acagtcaccg gcgcggcgaa gccagcgaag
     2941 tcagagggcg ggttgttgcg cgaggtagag agttgcgttg gagattgtaa gttccagacc
     3001 ttgcgggcct gatgtagtta agccagcgct ttcaccggtg tgcctcgtga ttttgaagtg
     3061 accttcgttg atttgaatga cgacgcgatg cgcactgccc gaagttgtcc atgccgcgat
     3121 gtgaagctca tcacctttgc caaagacgag gacgtaatcg ctctcgctgc ccacggacaa
     3181 gcgacgctga tacgcgtaac cgtggaagca ttctgaaaga gtcttcgcgg ctagataggc
     3241 gggctttggc tcaaagacct gatcgcgacc gtcctgatag gaattgcgca ccaacccaaa
     3301 gttatgttcg ggctcgttag gatccaatcc gtcgtcgcgc cagtcatacc agatcgaaat
     3361 gggaatgtaa ttggcgatat tcgtaagcat ttcgcgcgcg aacatctcgc cttgcttttc
     3421 gtcactcatg cctcgccaga cagatgaata gccccattca ctggagatga ttgggacgtc
     3481 tttggcttgt gtgacaaccc cgtcgctacc gctccgggtt ctgtaactcc gggttctgta
     3541 caccgcaatc atcttgcgca gtcggcaata atcgttagcc gccgcttctg gatctgagcg
     3601 acggtaagga tgcaccgaaa ccgctgacca gtaatcgagc aaacccgctt taaagcacgc
     3661 ttcgagaaaa ggaaaatcga tccccgacgt ggccgggcca atcagttttt catttggcac
     3721 ttcagatcga aatgcgcgac cgacggccaa cgccagcgca atgtactcat cgacattcgg
     3781 tcgcggcggc cagaacgtcg cgaggttcgg ttcgttgtaa acttcccaaa tcacgccgcg
     3841 gccagaaaat gttttcgccg ccgccgcagc ccagcgaacg aatgcttgcc gtgcgctttc
     3901 cgttcgcgga ggcgcgccgt tgtcgtagag tggattgccg taatcaagaa tgaacaacgc
     3961 gcggatgtga aacggttcca gcgcggtcat caggcgatcg taagccgaaa agtcatagag
     4021 gcctcgctgt ttttccgtcg cgtcccactt gaaatccatt cgcacccagc ggaagcccgc
     4081 atcggcgagc attttgattt cgcccggctg cggatcggtg aaatgaatgt tcacgcccaa
     4141 gccatccaag atcatctgcg tctgagattg tgcgctccag gctcctgagc aattatcgga
     4201 gagacggtca gcggaggttc cgatcgagag gaaaatcgag agcaggacga gaacgaggcg
     4261 aagcttcatt ggtgaatcaa gaccgtgtgg caaatcattg gctttcgaat gcgctctgag
     4321 gcttaggaat cgcgctccgg cctcgaatcg aaattccaca atagcagccg agagaagcca
     4381 cgctcgatcg cgatggcggc cttataaccg gacgccggac gcagttcgtt gaacaaccag
     4441 cgcgaaatct cagatcgatc attgcgatta tcaagcaaag ctggtcgagc atcgggcgcg
     4501 aacgctacgt cgaattgatc gagcgggagc gacaaccctt ccccgcgcgc cttgatgtaa
     4561 gcttccttgc gcgtccagca attgaagaat gc
//
LOCUS       DASZZE010000326         4246 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_28974, whole genome shotgun sequence.
ACCESSION   DASZZE010000326 DASZZE010000000
VERSION     DASZZE010000326.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4246)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4246)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4246
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28974"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..561)
                     /locus_tag="VHD88_06295"
     CDS             complement(<1..561)
                     /locus_tag="VHD88_06295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21438.1"
                     /translation="MSTPQETALSAQLTNRQTNSAEIVEQPAASATVDPNNPPWSFPQ
                     ALLTWFLSVALLLVPQVFALAYVAYHYQGTTPTKEIVFADKTFVLILLFGLLPVHALT
                     LALAWAVVTRFGKVSAAKVLGWSWPAGFGIWKSVGLAIVLFPLALFISNKFGGQETDI
                     ERILESSRAAALLTAFLATATAPLVEE"
     gene            complement(612..2756)
                     /locus_tag="VHD88_06300"
     CDS             complement(612..2756)
                     /locus_tag="VHD88_06300"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HVS21439.1"
                     /translation="MQSVAETKQSLSLERKLKLHEARELIIGRLAADLPTSINLDTFL
                     RVFVEELGQMMEVDRCDIIKLTAEGELRVSQEWRVSEDVPSSLNMRIPVDIATLSQHL
                     DVKQPIRLDDTSSQELDHKVRFFAKSLGTRSLLVVPVILDDDVLGLIGLHHTRAPRRW
                     FDEEVAFLQSIATQLAIGYQYTRIYTDKKREAETTKALLEIANALNARSDFGDVSSAV
                     LERALALVGADYSALGVLDSDEKRLTLAAFKAAPHAVTDKVRGLIETHGQSLDITAFP
                     AMVGVLSEGKTLKLLETDLPLPVRAMFNATLGGRAALVAPVRIGSHTFGLLGLVWSEP
                     RDQFKDHEIALVEGIADQIGTALERDHLSAEVMRLKSALLERYGEDRIIGQAPAIRRA
                     IELALSVADTQTSVMIQGESGTGKELLANLIHFNSGREDKPYIKLNCGAIPETLLESE
                     LFGHEKGAFTDASTRRRGRFEEANGGTLFLDEVGEMSLAAQVRLLRVLQDGEFTRVGG
                     NEILKGDVRVVAASNVDLERAVDEGTFRRDLFYRLSVFPIQLPALRERREDIHPLVIH
                     FLEHYKQRTGRFVSGISKPALHALTSYDWPGNVRELENAIERAVIIAAGRQIELDDLP
                     AAIGNVAAGQQALIRVERAEAAREGRSAKLEIDVPSSMDEIERHAIEATLDYTSGDKT
                     RAARLLNIGRKTIYRKLEQYNGKRENSKPQIN"
     gene            3007..3303
                     /locus_tag="VHD88_06305"
     CDS             3007..3303
                     /locus_tag="VHD88_06305"
                     /inference="COORDINATES: protein motif:HMM:TIGR02605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HVS21440.1"
                     /translation="MPIYEFRCKKCNAQIEVFQKLSDKPPVRCQKCGGRLEKQSSRTS
                     VQFKGEGWYVTDYARKGSVAEKVDKELSSPEPSSASDATPKKTPPAKKTGSNTN"
     gene            3340..>4246
                     /locus_tag="VHD88_06310"
     CDS             3340..>4246
                     /locus_tag="VHD88_06310"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HVS21441.1"
                     /translation="MRTALNTRSPRKKTGQPRVCWRALVFVLTAACLLSTLLGQAGRR
                     AHPSGEASTTLNVVATRVNGASTPVTSKDISLFDGGVEQTIKNFSPDLSPARIVLLVD
                     NSLTIRADVEKLEAATLEFAYEIYDGDKLLIVGYDSNAEIVSDWTDNAKKIETELKTF
                     RKKGDPHLFDAIAAVVEDALRPLSAQKRTIVVISDGLDRGSKTKFNQALSVLQSLDIA
                     VYCVQAPDRTRGAIRRDVPKPRQVIDDLAEGTGGRIFPINDPRAAAQAICDELRKNRY
                     VLSYLPQNVLYSEARRLLIIGESGVN"
BASE COUNT          942 a         1239 c         1193 g          872 t
ORIGIN      
        1 ttcttcgacg agcggagccg tcgcggttgc caggaacgcc gttagtagcg cggctgcgcg
       61 agagctctca aggatccgtt cgatatcggt ttcttgtcca ccgaacttat tactgatgaa
      121 cagcgcgagc gggaagagaa caattgccaa gcccacgctc ttccaaatcc cgaagccggc
      181 cggccaactc caacccagta ctttcgccgc ggaaactttg ccgaaccgag tgactacggc
      241 ccacgccaaa gccagagtga gcgcatgcac gggtaacagt ccgaatagaa gtatgagaac
      301 gaaggtcttg tcggcaaaaa cgatttcttt cgtgggggtt gttccttgat agtgatacgc
      361 tacataagcg agcgcgaaga cctgaggcac caagagcaaa gctacgctca aaaaccatgt
      421 cagcaatgcc tgcgggaaac tccacggcgg attgttggga tcgacggtgg ccgatgctgc
      481 cggctgttcg acgatctctg ccgagtttgt ctgacgatta gtcaactgtg ctgaaagtgc
      541 agtttcttga ggtgtgctca cgcggctagg agtttagcgc aaagcgtcaa acctgcgcca
      601 tcagtcgtct ctcagttgat ctgtggtttg gaattctcgc gcttgccgtt gtactgctcc
      661 agcttgcgat agatcgtctt gcgaccaatg ttcagcaggc gcgccgcgcg tgtcttatcg
      721 ccggaagtgt aatcgagcgt ggcttcaatc gcgtggcgct cgatctcgtc catcgaagaa
      781 ggaacatcaa tctccagttt agccgagcga ccttcgcgcg ctgcttccgc gcgctcgacg
      841 cgaatcagtg cctgctgtcc cgccgcaacg ttgccgatcg cggccggcag gtcgtcaagt
      901 tcgatctgtc ggccggcggc gatgatcacg gctcgctcga tcgcgttctc caactcgcga
      961 acatttcccg gccagtcgta actggtcaat gcgtgcaagg caggcttgga aatgccggag
     1021 acgaaacgcc cggtgcgctg tttgtagtgt tccagaaagt gaatcaccag cgggtgaatg
     1081 tcttcgcggc gctcacgcag cgccggcagt tgaatcggaa aaaccgacaa acgataaaag
     1141 agatcgcggc gaaacgtgcc ttcgtcaacg gcgcgttcga gatcgacgtt cgaagcggca
     1201 acgacgcgca catccccttt caaaatctcg tttccgccaa cacgggtgaa ctcgccgtcc
     1261 tggagcacgc gaagcaatcg cacctgcgcc gcgagactca tctctccgac ttcgtcgaga
     1321 aaaagcgtgc cgccattcgc ttcctcaaaa cggccacgac gacgcgtgct cgcgtcagtg
     1381 aaggcgcctt tctcgtggcc gaagagttcc gactcgagca gcgtttccgg aattgctccg
     1441 cagttgagtt tgatgtacgg cttgtcttcc cgacccgaat taaagtggat gagattcgcc
     1501 agcagctctt tacccgttcc tgattcccct tgaatcatga cggaggtttg cgtgtcagca
     1561 acactgagcg ccaattctat ggcgcgtcgg atcgcgggtg cctggccgat gattcgatcc
     1621 tcgccatagc gctcgagcag tgcgctcttc aaacgcatga cctccgccga aaggtgatcg
     1681 cgctccagag ccgtgccgat ttgatcggcg atgccttcga ccagggcgat ctcgtgatcc
     1741 ttgaattgat cccgcggctc gctccacacc agaccaagta ggccaaaggt gtgactaccg
     1801 atgcgcaccg gcgcgaccag cgcggcccga cctccgagcg tcgcattgaa catcgcgcgc
     1861 accggcagcg gcagatctgt ttccagaagc ttcaaggtct taccttctga gagcacgcca
     1921 accatcgccg gaaacgcggt gatgtccagc gactgtccat gcgtctcgat caatccgcgc
     1981 accttgtccg tgaccgcgtg cggcgcagct ttgaaagccg cgagagtcag gcgtttttca
     2041 tccgagtcga gcaccccaag cgcgctatag tcagcgccaa ccaaggccag cgcgcgttcc
     2101 aataccgccg acgagacatc gccaaagtct gatcgcgcgt tcagcgcgtt ggcgatttcg
     2161 agcagcgctt tggtcgtctc agcctcgcgt ttcttgtcgg tgtaaatgcg cgtgtattgg
     2221 taaccaatcg ccagttgcgt cgcgatggat tgcagaaacg cgacttcttc gtcaaaccaa
     2281 cgacgcggcg cgcgcgtgtg atgcagccca atcaaaccaa gcacgtcatc gtccagaatg
     2341 accggaacca cgagcaacga gcgcgtaccc aaactcttcg caaagaagcg gaccttgtga
     2401 tcgagttcct gcgatgaagt gtcatcaagt ctgattggtt gcttgacgtc gaggtgttga
     2461 gacagagttg cgatatcgac cggaatgcgc atgttaaggc tggacggcac gtcttcagac
     2521 acgcgccact cctggctgac gcgaagctcg ccttccgcag tcagtttaat gatgtcgcat
     2581 cgatcgactt ccatcatttg tcccagctcc tccacaaaga cgcgcaggaa cgtatcaaga
     2641 ttgatcgaag tcggcagatc ggcagccaaa cgcccgatga tcaactcgcg cgcttcgtgc
     2701 agtttgagct tgcgttcgag agaaaggctc tgctttgttt cggccacaga ttgcatcggt
     2761 gctaattaat ttgcgaacgg acgtcagaag tgatcgccgc ggacgccggg gcacaaccgc
     2821 ttcaactttc gagcgatcat agcggaacag cggcgcaagt tgcaaaaacc ctcgactatc
     2881 atggctgaga cggcgagcga tctcggcgcg gcacgcatct cagaagtgct cggttgtcag
     2941 gtctgaaagc ggttgcgtat aatcctcgat cagtgaaagt ggatttcaag tagaagcgag
     3001 ttcccgatgc cgatttatga attccgttgc aagaaatgca acgcccagat cgaggttttt
     3061 cagaagctct ccgacaaacc gccggtgcgc tgccaaaaat gcggcggccg cctggagaaa
     3121 cagtcttcga ggacgtcggt tcagttcaaa ggcgaaggtt ggtacgttac cgattacgct
     3181 cgcaaaggaa gcgtggccga gaaagttgat aaggaacttt cttcgcctga accgagttcc
     3241 gccagcgacg cgacgccaaa gaagacgcct cctgcgaaaa agaccggctc aaacactaac
     3301 tgaacgagaa atttgattgc gccctgcttt gccaaaaaaa tgcgcacggc actaaacacc
     3361 cgcagcccga ggaagaagac ggggcagccc cgtgtctgct ggcgcgcgct ggttttcgtt
     3421 cttactgcgg cgtgtttgct gagcacgttg ttaggccagg ctggccggcg cgcgcatcct
     3481 tccggcgaag cctcgacaac gctgaacgtc gtcgcgacgc gcgttaacgg tgcttcgact
     3541 ccagtaactt cgaaagacat ttcattgttc gacggcggcg tcgaacagac aatcaagaac
     3601 ttctcgcccg atctttcgcc cgcgcgcatc gtgctgctgg tggataactc tctgacgatt
     3661 cgcgctgacg tcgaaaagct ggaagccgcc acgctcgagt ttgcctacga aatctacgac
     3721 ggggacaagc tgctgatcgt cggttacgac agcaacgccg agatcgtttc cgactggacc
     3781 gacaacgcga aaaagatcga aacagagctg aagacttttc gcaagaaagg cgatccgcat
     3841 ttgttcgacg caatcgccgc ggttgtcgaa gacgcgctcc ggccattgtc ggcgcagaag
     3901 cgcacgatcg ttgttatcag cgacggcctc gaccgcggca gcaagacaaa attcaatcag
     3961 gccctgagcg tgctccaatc gctcgacatc gctgtctatt gcgtccaggc gccggatcgc
     4021 acgcgcggcg ccattcgtcg cgacgtacca aagcctcggc aggttattga cgatcttgcc
     4081 gaaggaaccg gcggccgcat tttcccgata aacgatccac gcgcggcggc tcaggcaatt
     4141 tgtgacgagc tgcgcaagaa tcgttacgtg ctttcttacc tgccacaaaa cgttctctac
     4201 agcgaggcgc ggcgcctgct gataatcggc gaatccggag tcaacg
//
LOCUS       DASZZE010000327         1682 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_270372, whole genome shotgun sequence.
ACCESSION   DASZZE010000327 DASZZE010000000
VERSION     DASZZE010000327.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1682)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1682)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1682
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_270372"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1058
                     /locus_tag="VHD88_06315"
     CDS             <1..1058
                     /locus_tag="VHD88_06315"
                     /inference="COORDINATES: protein motif:HMM:NF012640.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HVS21442.1"
                     /translation="DAVWMFFRTVLAFDRVQQQIEITSVVFTDEAQGDRSRLRTLYQR
                     AVADTEHIEMNLSKELPAPPAQQQQTNDANEHFQSNWPREDFEAAVGAIKEHIVAGDC
                     YQVVIAQQFTKATAAPPIAIYRALRATNPSPYMHFLRLGKETIVGASPEMLVRCHGQR
                     LDYRPIAGTRKRGKTEAEDWMLGEEMRNDEKEVAEHTMLVDLGRNDLGRVSDYGSVKV
                     EELMTIERYSHVQHLVTSLRSRLRDGLDRFEALAACFPAGTVTGAPKIRAMEIIRKLE
                     PAGRGVYAGAVLYADYADNLDSCIAIRTIVLRDGVATVEAGAGIVADSIPEREYEECV
                     SKARGLFRAIELAEKGL"
     gene            1377..>1682
                     /locus_tag="VHD88_06320"
     CDS             1377..>1682
                     /locus_tag="VHD88_06320"
                     /inference="COORDINATES: protein motif:HMM:TIGR00566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component II"
                     /protein_id="HVS21443.1"
                     /translation="MLLVIDNYDSFTYNLVQYLGELGEQIEVRRNDAVRIEEIELHLR
                     PSRIVISPGPGTPDGAGISMKVIERLAGKVPILGVCLGHQAIGQVFGGRIKRASAIFH
                     "
BASE COUNT          370 a          455 c          498 g          359 t
ORIGIN      
        1 acgatgccgt ttggatgttc tttcgcaccg tgctggcctt tgatcgcgtg cagcagcaga
       61 tcgagatcac ttcagtggtc ttcaccgacg aagctcaggg cgatcgatcg cgtttgcgca
      121 cgctctacca acgcgcagtt gccgacaccg aacacatcga aatgaatttg agcaaagaat
      181 tgcccgcgcc ccctgctcaa caacagcaga ccaacgacgc gaatgagcat tttcaatcta
      241 actggccacg cgaggatttc gaagccgccg tcggcgccat caaggagcac atcgttgccg
      301 gcgactgcta tcaagttgtg atcgcccagc agttcacgaa agcgacagcg gcgccaccaa
      361 ttgcgattta tcgcgcgctg cgagcgacga atccgtcgcc gtacatgcac tttctgcggt
      421 tgggtaagga aacgatagtt ggagcgtcgc cagagatgct ggtgcgatgt cacggtcagc
      481 gcctcgacta tcgcccgatc gccggcacgc gcaagcgcgg taagacggaa gctgaagact
      541 ggatgcttgg cgaagaaatg cgcaacgatg aaaaggaagt tgccgagcac acgatgctgg
      601 tcgatctcgg ccgcaacgat ctcggccgag tttcggatta cggctccgtg aaggtcgaag
      661 agttgatgac gattgagcgg tattcgcacg tgcagcatct ggtgacgagt ttgcgctcgc
      721 gtcttcgtga cggtctcgat cggttcgaag ctctggctgc atgttttccc gccggcacgg
      781 tcacgggcgc gcccaagatt cgcgcgatgg aaatcattcg caagctggaa ccagcgggcc
      841 gcggcgttta tgcgggcgct gtgctctacg ctgattacgc cgacaacctg gattcttgca
      901 tcgcgatccg cacgatcgtc ctgcgtgacg gcgtggccac ggtcgaagcc ggtgccggga
      961 tcgtcgctga ttcgattccg gaacgcgagt acgaggaatg tgtgagcaaa gcgcgtggtt
     1021 tgtttcgcgc gattgagctg gcagagaagg gattgtgacc tgtgaaactt gtaatcccga
     1081 ttttcgcaat cgctctgctt gctgaactag ctgcgtcttc gtggcagtgg ttatatgcgc
     1141 cgacagacag cttccgagtt ttatacggag gctctttcgt cgcttacgaa agccagcgct
     1201 tcacagtgtg gctcatcgcg tttgtgatgc taggcggaat ttggattgtg gtcagtgcgc
     1261 gtcgccgtac aggccgagca aaaagcgaaa gcggtaggca gaaagcactt aactgaaaac
     1321 tcaagattca aaattcaaga ctcaagactc aagactcaag actcaaactc aaaaccgtgc
     1381 tactagtcat cgacaactac gattcattca cttacaacct ggttcagtat ctcggtgaac
     1441 tgggcgagca gatcgaagtg cgccgcaacg acgcagtccg gatcgaagag atcgagttgc
     1501 acctgcgtcc gagccgaatc gtcatttcgc ccggaccggg cacgccggac ggcgcgggca
     1561 tatcgatgaa agttatcgag cgcttggccg gaaaggttcc gattctcgga gtgtgcctgg
     1621 gccatcaggc gatcggtcag gtttttggcg gtcgcatcaa gcgcgcgtcc gcgatctttc
     1681 at
//
LOCUS       DASZZE010000328         2300 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_192500, whole genome shotgun sequence.
ACCESSION   DASZZE010000328 DASZZE010000000
VERSION     DASZZE010000328.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2300)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2300)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2300
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192500"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1156
                     /locus_tag="VHD88_06325"
     CDS             <1..1156
                     /locus_tag="VHD88_06325"
                     /inference="COORDINATES: protein motif:HMM:NF012361.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HVS21444.1"
                     /translation="DLPVMLPDRAEFTGTGESPLKGVAEFVNTPCPKCGRLGKRETDT
                     MDTFVDSSWYFFRYCDPKNVEAPFDPEIAAKWIPVDQYIGGDSHAVMHLIYTRFWNKV
                     MRDLGLVKFNEPVKRLLTQGMVTNLVEGTNEWKAMSKSLGNGVDPDEMIEAYGADATR
                     LFVLFAAPVENELRWSETGIEGAVRFLRRVWSMVRRWRYRLKEVETTPVSKLEFNDAA
                     RALRRKTHQTIARVTDDFEKLDLNTNVSALMELSNELGEFNVEPAKASAGEVFAVREA
                     IAALVIMLAPFSPHVAEEMWESLGYEGGLLKSAKWPVADAELARKEELEIPVQVNGKL
                     RSKVIVSPDISEADLRTMALADRKVQSFIDGHEVVKVIVVPQRLVNVVVK"
     gene            1239..1457
                     /locus_tag="VHD88_06330"
     CDS             1239..1457
                     /locus_tag="VHD88_06330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21445.1"
                     /translation="MRKLATYEGVVENGQVKLPPNTDIPEKTRVYVLVPDVEAQKTLY
                     IASPRLVHPDQAKDFEKQIVEETTDASL"
     gene            1444..1836
                     /locus_tag="VHD88_06335"
     CDS             1444..1836
                     /locus_tag="VHD88_06335"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: protein motif:HMM:NF012306.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="retropepsin-like aspartic protease"
                     /protein_id="HVS21446.1"
                     /translation="MPAYDSNLFNPSAPLARVILRDLRNGNTANEVPMLIDSGADITL
                     VPKTSIDKLKSEIDPSEGYELKGFDGHRSVAKSVQLDLVFLRRTFRGRFLAVDSEYGI
                     LGRDVLNHVSLLLDGPGSSWSESTTGAA"
     gene            1932..>2300
                     /locus_tag="VHD88_06340"
     CDS             1932..>2300
                     /locus_tag="VHD88_06340"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HVS21447.1"
                     /translation="MKECPTCRCCFADEVAYCPDDGVATTPSIMGEPILDGRYQLERR
                     LGQGGMGVVFKARHIFLKTQHAIKIILPDLVGNDPMLVTRFRQEALAAAAIRHQNIIA
                     VTDFGVVRGTMPFLVMEFVQG"
BASE COUNT          531 a          587 c          677 g          505 t
ORIGIN      
        1 agacttgccc gtgatgttgc ccgatagagc cgaattcacc ggcacgggtg aatcgccatt
       61 gaaaggcgtg gctgagttcg tcaacacgcc gtgcccgaag tgcggtcgct tgggaaagcg
      121 agaaaccgac acgatggaca ctttcgtcga ctcttcgtgg tacttctttc gctactgcga
      181 tcccaaaaac gtcgaagcgc cgttcgatcc tgagatcgcc gcgaaatgga ttccggtgga
      241 tcaatacatc ggcggcgact cgcacgcggt gatgcatctg atttacacgc gcttttggaa
      301 caaagtaatg cgcgacctgg gtctggtgaa attcaacgag ccggtcaagc gtttgttgac
      361 gcagggcatg gtgacgaatc tggtcgaagg cacgaacgaa tggaaagcga tgtcaaagag
      421 ccttggcaac ggcgtcgatc ccgacgagat gatcgaagcc tatggcgcgg acgcgacgcg
      481 tttgttcgtg ctgtttgccg cgcccgtgga aaatgaattg cgctggtcgg aaaccggcat
      541 cgaaggcgcc gtgcgatttc tgcgtcgcgt gtggtcgatg gttcgtcgtt ggcgctaccg
      601 tttgaaagaa gtagagacaa cgcccgtgtc taagctggag ttcaacgatg ccgcgcgcgc
      661 gctgcggcgc aagactcatc agacgatcgc acgcgtgaca gacgacttcg agaagctcga
      721 tctcaacacg aacgtttcgg ctttgatgga gttgtcaaac gagttgggcg aattcaatgt
      781 tgagcccgca aaggcatccg ccggcgaagt gtttgcggtg cgcgaggcga tcgcagctct
      841 cgtcatcatg ctcgcaccgt tctctccgca cgttgctgaa gagatgtggg aaagcctcgg
      901 ttatgaaggc ggcttgttga aatccgcgaa gtggccggtc gccgacgccg aactcgcgcg
      961 caaggaagag ctggagattc cggtgcaggt taacggcaag ctccgttcaa aagttatcgt
     1021 atcgcctgat atttcggaag ccgatctgcg cacgatggcg ttggctgatc gcaaagtgca
     1081 aagcttcatt gacggccatg aagtcgtgaa ggtgatcgtc gtgccacaaa gactggtgaa
     1141 cgtggtggtg aagtaaacgt tgactgaacg ccaacggctt aggttagacc gaaaacttgg
     1201 cttatgctag attcaggttc ttgagaagag gttagtaaat gagaaagctc gcaacatacg
     1261 aaggggtcgt cgagaatgga caggtaaagc tgccgccaaa caccgacatt cccgagaaga
     1321 cgcgcgtgta cgtgctagtg ccggatgtcg aggcgcaaaa aacgctgtac atcgccagcc
     1381 cgcgcttagt acatccagac caggcgaaag acttcgaaaa gcagatcgtc gaagaaacaa
     1441 ccgatgccag cctatgattc caacctcttt aacccatcag cgcctctggc aagagtgatc
     1501 ctgcgagatc taaggaatgg aaataccgct aacgaagtac cgatgttgat tgactctggc
     1561 gctgatatca ctctcgttcc gaaaacatcc attgataaac tcaagtcaga aattgatcca
     1621 agcgagggct acgagttgaa gggatttgat ggtcaccgga gcgtggcaaa gtcagtgcaa
     1681 ctcgacttag tgtttctccg gcgaactttt agaggccgtt ttctcgcggt cgattcggaa
     1741 tacggcattt tgggccgcga cgttctgaat catgtctcat tgcttcttga tggccctggg
     1801 tcgagctgga gtgaatcgac aaccggcgca gcgtagaatg ccttctgctt gcttgcctgc
     1861 ggcgtagccg ctaaaatcct ttttgcgaac gtcttagccc gcttcgagtc tcgcagtagc
     1921 cgaaccgacg aatgaaagag tgtccaacct gtcgctgttg ctttgccgac gaagtcgcct
     1981 attgtcctga cgatggcgtg gccacgacgc cctcgatcat gggcgagccg atcctcgatg
     2041 gccgctatca gcttgagaga cggctgggtc agggcggcat gggcgtcgtc ttcaaagcgc
     2101 gtcacatctt tctaaaaact cagcacgcca tcaaaattat tttgccggat ctagtcggaa
     2161 acgatccgat gttggtgacg cgcttccgtc aggaagcgct ggccgccgcc gcgattcgtc
     2221 atcaaaacat catcgcagtc actgactttg gcgtggtgcg cggcacgatg ccgttcctgg
     2281 tgatggagtt tgtgcagggc
//
LOCUS       DASZZE010000329         7661 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_301460, whole genome shotgun sequence.
ACCESSION   DASZZE010000329 DASZZE010000000
VERSION     DASZZE010000329.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7661
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_301460"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..816
                     /gene="trpC"
                     /locus_tag="VHD88_06345"
     CDS             <1..816
                     /gene="trpC"
                     /locus_tag="VHD88_06345"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: protein motif:HMM:NF001377.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004425 - indole-3-glycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006568 - tryptophan metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HVS21448.1"
                     /translation="RIIELKKIRLAKSKQETPLAEMRARATDVRSKSQTHRLLAALSK
                     DGVNIIAEIKRASPSKGLIRGDIDAATVARAYEAGGAAAISILTEEDHFQGSLDDLRV
                     VRHAVNLPLLRKDFIFDEYQVYESAAAGADALLLITAALDDGTLARLRRITEDELGMN
                     ALVEVHSADEMKRAVKFGARIIGVNNRGLRTFTVSLETSVQLAPIAPNEIALISESGI
                     ESAEDIHRLRMLGYRGFLIGESLMRADDPEIALRGFTQRREGAEEVGVNEWSE"
     gene            804..1457
                     /locus_tag="VHD88_06350"
     CDS             804..1457
                     /locus_tag="VHD88_06350"
                     /inference="COORDINATES: protein motif:HMM:NF012900.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HVS21449.1"
                     /translation="MVRVKICGITNFADARAAIDAGADMLGFNFYRPSPRFIEPKDAR
                     AIIQTVRTEIDASSRTVKMIGVFVNESSAESLASIAGEAGVDGVQLHGDESFEFCGKL
                     KAILKDRVLIKMLSVSDDFDPARAAEYEVDAIMLDAFHSELRGGTGRVIDWSTARRTR
                     DLVPHLYLAGGLSPENVAEAIAEVRPYAVDACSALESSPGTKNAERMKAFVRAVRSA"
     gene            1518..2327
                     /gene="lptB"
                     /locus_tag="VHD88_06355"
     CDS             1518..2327
                     /gene="lptB"
                     /locus_tag="VHD88_06355"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR04406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HVS21450.1"
                     /translation="MSQIVEAPTTAGSAQSEVTAIKARAEEPSARALAAFNLQKSYGR
                     RRVVDDVTLRVEPGEVVGLLGANGAGKTTTFYMIIGLETPEAGRVYLAGRDVTKLPMY
                     LRARLGLGYLPQEPSVFRKMTAAENILAVLETMGLRRREQLKRVEELLQEFGIEHVRN
                     TRGDSLSGGERRRTEIARALATEPQFILLDEPFAGIDPKAVDDIQSVILYLRGRGIGI
                     LITDHNVRETLGVTDRAYIMVEGKIFRSGGPRDLTEDAEVRRLYLGEKFRM"
     gene            2428..4044
                     /gene="rpoN"
                     /locus_tag="VHD88_06360"
     CDS             2428..4044
                     /gene="rpoN"
                     /locus_tag="VHD88_06360"
                     /inference="COORDINATES: protein motif:HMM:TIGR02395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HVS21451.1"
                     /translation="MSIRLTTSLSQRLVLTPQLRQRIEMLQMTTIELSDLIQQQLNEN
                     PVLEEVATQEEAQELAEKILDHMASGGDLENLPAPTVEASAPELGEPSSNGAGESEPD
                     TSFLSESETGSETDTAAGTDADSANSEAGEDGSAEGSRDAFEEVDFGREFQDYLDPGY
                     KTQEFEYKEDAPTFEQFLTKAPSLAEHLEWQLHMDCGEGEICDAAVSVIGNLDEDGRL
                     NATNEEIAAQGGWSEDTVEQARSLVMRLEPVGCGTRDVRESLLVQLEVRGETERLASQ
                     LIKDHLEELQQHKLPHLSKQIGIDLETLAAELQFIRTLDPFPGRRYSSEEPILISPEI
                     YIEKLEGNEDYVIYFADDGSPRLRISPNYQQMLGQPSVTKETRDFIKEKMRSAIDLLR
                     NIEHRRQTIYRVVESIVHRQREFLDNGVQSIKPMMLKDIAEDIGMHLSTVSRVVNRKY
                     AHTPQGVIELRRFFTEGMLNEEGEEVSTRIIKLKIKKLIEEEDSHNPITDEQVVKILV
                     KDGIKLSRRTVAKYRDQMNIPGSRERRAVL"
     gene            4087..4623
                     /gene="raiA"
                     /locus_tag="VHD88_06365"
     CDS             4087..4623
                     /gene="raiA"
                     /locus_tag="VHD88_06365"
                     /inference="COORDINATES: protein motif:HMM:TIGR00741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_component: GO:0022626 - cytosolic ribosome [Evidence
                     IEA];
                     GO_function: GO:0045182 - translation regulator activity
                     [Evidence IEA];
                     GO_process: GO:0009386 - translational attenuation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HVS21452.1"
                     /translation="MTFEYTGRHVEVTPAIRRHVEEQFKKLDHIFNGNSAPRVHVIMA
                     VEKSRQTGEVVVHWRDHTLTATDTNADMYMALSRAVGKIEKQALRIKKKTIDRKHSAR
                     KTSVVAPNPDGQVEATPLPARIIAARRYPVKPMTAEEAALDLSARTDQFVVFRDADTN
                     RVGVLYKREDGNFGLIEP"
     gene            4709..5623
                     /gene="rapZ"
                     /locus_tag="VHD88_06370"
     CDS             4709..5623
                     /gene="rapZ"
                     /locus_tag="VHD88_06370"
                     /inference="COORDINATES: protein motif:HMM:NF015620.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HVS21453.1"
                     /translation="MRRVTTRSSSSPDIVIITGLSGSGMTSATNAFEDLGYFCVDNMP
                     LTLLPTFARLVHADEDQRGRIDRAALVISFREGRFLSDFAKQLRVLRREGVGVSVIFF
                     EASDEILARRFSETRRPHPADRGKGLFDAIGAERAAMKRVRALADEVVDTFDHTVHSL
                     RKLLLERFSPNGEAAPMRVQVLSFGHKFGTPRDVELMFDVRHLPNPFFVEGLRTLPGS
                     DRRVVKYLIEQPEVEETVKRFSDLLDYLLPQYKREGKSYLTVGIGCTGGRHRSVMVAN
                     ELTKRLRRNGFDARAVHRDMRKAAVAKK"
     gene            5652..6110
                     /locus_tag="VHD88_06375"
     CDS             5652..6110
                     /locus_tag="VHD88_06375"
                     /inference="COORDINATES: protein motif:HMM:NF015567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21454.1"
                     /translation="MKVIDAQSASPESSRMVGGVIVTHGHLASEFVAAAEMIVGPIPH
                     VTSASIDWHDDVDVARAELERAIARVSQGRGVLLLTDMFGGAPMDIASMFLGDSGIEV
                     VTGVNLPMIIKLAEQTPEESLADVARRVRDGGKEGIHLAGELLAGPATTG"
     gene            6344..7582
                     /locus_tag="VHD88_06380"
     CDS             6344..7582
                     /locus_tag="VHD88_06380"
                     /inference="COORDINATES: protein motif:HMM:NF014606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015159 - polysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015774 - polysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis/export family
                     protein"
                     /protein_id="HVS21455.1"
                     /translation="MKRILFLFGLLSVALNLAAAQTQTRERRSADSQPEVRGDSTAVR
                     NRVVGPTKVANHSEGPKAGAARQESASSDQASDANAQLVNADARNGVQPSWGETAVVT
                     KVVPEKFAGSSKTPNNKATQPSPNAQVGTKLIQHTALIRAAPSIRLIAPPTVAKVSPA
                     TASTSPTAATASYRVGVDDVLDVRLANAPTRESTLFTILKDGTVEYPLLSGPVVVAGL
                     TTDEIAGLLSKEIKVIAGARATVSVRDYASHVVVVTGLVDNPGRKTLRRESMPLYSVL
                     AEALPRPEASVATILRAGKEQTVSLADEKATSTLILPGDVLKIASGNATPKRFLYVGG
                     DVASPGEKEFREGMTLTQALLSAGGDSRGAKITVKVARRNANGFLVTNEFSLQSIVEG
                     KLQDPLLMAGDRIEVARGVW"
BASE COUNT         1790 a         2008 c         2287 g         1576 t
ORIGIN      
        1 agaataatcg aactcaaaaa gattcgtctg gcgaagtcca agcaagagac gccgctagcg
       61 gaaatgcgtg cgcgtgcgac tgatgttcga tcaaagagcc aaacgcaccg tctgttagca
      121 gcactcagta aggacggagt gaatatcatc gcggagatca agcgcgcatc gccgtcgaag
      181 gggttaattc gcggtgatat cgatgctgca accgtcgcgc gagcttacga agccggcggc
      241 gccgcagcaa tttcgattct gacggaggaa gatcattttc aaggctcgct tgatgatttg
      301 cgcgttgtca gacacgcagt caacctaccg ttgctgcgca aggatttcat cttcgatgaa
      361 tatcaagttt acgaatcggc agcagcgggc gccgatgcac ttttgctgat taccgcggcg
      421 ctcgatgatg gaacgctggc gcgcctgcgt cgaatcaccg aagatgagtt gggaatgaac
      481 gcgctggtcg aagttcattc ggcggatgaa atgaagcgtg ccgtcaagtt cggcgcgcga
      541 atcattggcg taaataatcg aggcttgcgg acattcacgg tgtcgctcga aacctctgtc
      601 cagctcgcac cgatcgcgcc gaacgaaatc gcgctgatta gcgagagtgg gatcgaatct
      661 gctgaagata ttcaccgttt gcgaatgctt ggttatcgcg gtttcctgat tggcgagagt
      721 ttgatgcgcg cggatgatcc cgaaatcgcg ctcaggggtt tcacgcaaag gcgcgaaggc
      781 gcagaagaag ttggcgtaaa cgaatggtcc gagtaaaaat ctgcggcatc acgaatttcg
      841 cagacgcgcg cgccgcgatc gatgccggcg cggacatgct cggctttaat ttctatcgcc
      901 cgagtccgcg tttcatcgag ccaaaggacg ctcgcgcgat aattcaaaca gtgaggacgg
      961 aaattgacgc ttcatcgcga acggtaaaga tgatcggcgt gttcgtgaac gaatcatcgg
     1021 ctgagtctct ggccagcatt gctggcgaag ccggcgtcga tggagtgcaa ttgcacggcg
     1081 acgaatcgtt tgagttttgc ggcaagctga aagctatatt gaaggataga gttttgatca
     1141 agatgctcag cgtcagcgat gacttcgatc cggcacgagc ggcggaatat gaagttgacg
     1201 cgatcatgct ggatgcgttc cattcggagt tgcgcggcgg cacaggccgc gtgatcgatt
     1261 ggtcaactgc gcgccgcacg cgtgatcttg taccgcattt gtacctcgcc ggcggtcttt
     1321 cgccggagaa tgttgccgag gcgatcgcgg aggtgcgccc ttacgccgtt gacgcttgca
     1381 gcgcgttgga atcatcgccc ggaacaaaga acgcagagcg catgaaagcg tttgttcgcg
     1441 cggtgcgtag cgcgtaaact gcgaggcaga cttggagtct ggaatcattt gagcgcgtct
     1501 ggaagggaag cagtgcgttg tcacaaatag ttgaagcgcc aacgaccgcc ggttccgcgc
     1561 agtccgaagt gactgcgatc aaagctcgcg cggaggagcc atcggcgcgc gcgctggcag
     1621 ctttcaattt gcaaaagtct tacggtcgtc ggcgcgtcgt tgacgacgtc actctgcgag
     1681 tcgagccggg agaagttgtc ggcttgttgg gcgcaaacgg cgccggcaag acgacaactt
     1741 tttacatgat cattggcttg gaaacgccgg aggcggggcg cgtctatctg gcgggacgcg
     1801 atgttacgaa actgccgatg tacttgcgcg cgcgtctggg gctcggctac ttgccgcagg
     1861 agccgtcggt gttccgcaag atgacggcgg cggaaaatat tctcgcggtg ctcgagacga
     1921 tgggcttgcg ccggcgcgag cagctcaaac gagtcgaaga gttgcttcag gaattcggca
     1981 tcgagcacgt gcgtaacacg cgcggcgatt cgttgtcggg cggagagcgc cgccgcactg
     2041 aaatcgcgcg agccctggcg accgagccgc aattcatcct gctcgacgag cctttcgccg
     2101 gaatcgaccc aaaggcggtc gatgatattc aaagcgtaat cctctatctg cgcggtcgcg
     2161 ggatcggaat cctgattacc gatcataatg tgcgcgagac gctcggcgtg accgatcgcg
     2221 cctacatcat ggtcgaggga aagattttca gatccggcgg gccgcgagac ttgacagagg
     2281 atgcagaagt tcgaagactt tatttaggcg agaagttccg catgtaaatc cggtgcgcga
     2341 tcagcgcgtg atgggttata atctcgctgc gcggttgccc gcaaacgaaa tccccccggc
     2401 agttgccagg ttagttataa ttgacttatg tcaatcaggc tcacgaccag tctttcacaa
     2461 cgtctcgtgc tgacgccgca actgcggcag cggatcgaga tgctgcagat gactacgatc
     2521 gagctaagcg atctgatcca gcagcaactc aacgagaatc ccgtgctcga agaggttgcc
     2581 acacaggaag aagctcagga gctggccgaa aagattctcg atcacatggc aagcggcggc
     2641 gatctcgaaa atctgccggc acctacggtc gaagcctctg cgcctgaact cggcgagcct
     2701 tcttcgaatg gggctggcga aagcgagcct gacacaagct ttttgagtga aagtgaaacc
     2761 gggagcgaga cggatactgc cgccggcact gatgcagact cagcgaactc agaagcaggc
     2821 gaagacggtt ctgccgaagg gtcgcgagat gcgtttgaag aagtagattt cggtcgcgaa
     2881 tttcaggact acctcgatcc cggttacaag acgcaggagt ttgaatacaa ggaagacgcc
     2941 cccaccttcg aacagtttct cacaaaggct ccttcgctcg ccgagcatct ggaatggcaa
     3001 ctccacatgg actgtggcga gggcgagatt tgcgatgcgg ctgtatcggt catcggtaat
     3061 ctcgatgaag atggacgcct gaacgccacc aacgaagaaa tcgcggcgca aggcggctgg
     3121 tcggaagata cagttgaaca ggcgcgttcg ctcgtgatga ggctggaacc cgtcggttgt
     3181 ggcacccgcg acgtgcgcga aagtttgctg gtgcagctcg aagtccgcgg cgagactgaa
     3241 cgattggcct cgcaattaat taaggaccat ctcgaagaat tgcagcagca caagctgccg
     3301 catctctcga agcaaatcgg aatcgatttg gaaacgctcg ctgccgagct gcaattcatt
     3361 cggaccctgg atccgtttcc cggcaggcgt tactcgtccg aagagcccat cctgatttcg
     3421 ccggagatct atattgaaaa gctcgagggt aatgaagact atgtgatcta cttcgccgac
     3481 gacggcagcc cgcgcttgcg aatcagtccg aactaccaac aaatgctggg ccagcccagc
     3541 gtgacaaagg aaacgcgcga cttcatcaaa gaaaagatgc gctcggcgat cgatttgctg
     3601 cgcaacatcg aacatcggcg gcagacgatt taccgagtag tggaatcgat cgttcaccgg
     3661 cagcgcgagt ttctcgacaa cggcgttcaa tctatcaagc cgatgatgct caaggacatt
     3721 gctgaagaca tcgggatgca cctttcgacg gtctcgcgcg tggtaaaccg aaaatacgcc
     3781 cacacgccgc agggcgtgat cgaattgcgg cgcttcttca ccgaaggcat gttgaacgaa
     3841 gaaggcgagg aagtatcaac gaggataatc aagctaaaga tcaaaaaatt gatagaagaa
     3901 gaagattctc acaacccaat taccgacgag caagtggtaa agattctagt gaaagacgga
     3961 ataaaattat cgcgccggac ggttgcgaaa tatcgcgatc aaatgaacat ccccggatcg
     4021 cgtgaacgcc gcgcagtctt gtagagttcg gcccgcaaca gaagagcgag gaggtgacaa
     4081 atcgcaatga cgtttgaata taccggacgc cacgttgaag tcacgccagc aattcgtcgt
     4141 catgttgagg aacagttcaa gaaactagat catattttca atgggaattc cgcgccgcga
     4201 gtgcatgtaa tcatggcggt ggaaaagagc cggcagacag gcgaggttgt tgtgcactgg
     4261 cgcgatcaca cgctgaccgc gacggacacc aacgcagaca tgtacatggc gttgagtcga
     4321 gcggttggaa agatcgaaaa gcaagctctc cgtattaaga aaaaaaccat cgaccgcaag
     4381 cacagtgcgc gcaagacttc agtcgtcgct ccaaatccgg atggacaagt cgaggcgacg
     4441 ccgttgccgg cgcgaatcat cgccgcccgc cgttacccgg tgaagccaat gaccgccgaa
     4501 gaagctgcgc tcgatctctc ggcacgaacc gatcaattcg tggtcttccg cgacgcggac
     4561 accaaccgtg tgggcgtgct ctacaaacgc gaggacggca actttggctt gattgagccg
     4621 tgaccaactt gcgaacgaga ttaattaaga ggagcggcag aatgggttgt cgctcctctt
     4681 ccgttttgat gccgtcgccc gaattgagat gcgaagagta actacgagaa gctcgagttc
     4741 accggatatc gtcatcatca ccggcctgag tgggtcgggt atgacatcag caaccaacgc
     4801 gttcgaagac ctcggctatt tctgcgtgga caacatgccg ctgacactgt tgccaacctt
     4861 tgcgcgtctg gttcacgctg atgaagacca gcgaggacga atcgaccgcg cagctttggt
     4921 cataagcttt cgggaaggaa ggtttctgtc cgactttgcc aagcaactgc gagtattgcg
     4981 cagagagggc gttggtgttt cggtgatctt ctttgaggcg tcggacgaaa tactggcccg
     5041 gcgattcagt gaaacgcgcc ggccgcatcc cgcggatcgc ggcaaaggcc tgttcgacgc
     5101 aatcggagcg gaacgcgcgg cgatgaagcg agtccgcgca ctggcggacg aagtcgttga
     5161 cacttttgat cacaccgtac attcactgcg aaagcttttg ttggagcggt tcagccctaa
     5221 cggcgaggcg gcccccatgc gcgtgcaggt gctgagcttt ggacataaat ttggaacgcc
     5281 gcgagacgtg gaactgatgt ttgacgtgcg acatctgccg aatcctttct ttgtggaagg
     5341 cttgcgcacg ttgccgggga gcgatcggcg ggtagttaag tacctgatcg aacagcccga
     5401 agtagaagaa acggtgaagc gttttagcga tttgcttgac taccttttgc cgcagtacaa
     5461 gcgtgagggc aaatcgtatc ttacggtcgg cattggctgt accggcggac gtcaccgttc
     5521 cgtgatggtc gcaaatgaac taacaaaacg cttgcgtcgc aatggattcg acgcgcgtgc
     5581 cgtgcatcgc gatatgcgga aagcagcagt cgcgaaaaaa tgatccgcgg catttgcacc
     5641 tgctacagta aatgaaagta atcgacgctc agtctgcatc gcctgagtca agccgcatgg
     5701 tgggcggggt gattgtgacg catggtcact tagcgagcga atttgtagca gcagccgaaa
     5761 tgattgtcgg cccgattccg cacgtcacat cggcgtcgat cgattggcat gacgatgttg
     5821 acgtggcgcg tgccgagctt gaacgcgcaa tcgcgcgcgt atcacaaggc cgaggcgttc
     5881 tgctgctcac ggacatgttc ggcggcgctc cgatggacat tgcgtcaatg tttcttggtg
     5941 atagcggaat tgaggtagta acgggcgtca atctaccgat gatcatcaag ctggccgagc
     6001 aaacccccga agagtcgctg gcggatgttg cccgacgcgt ccgcgatgga ggcaaggaag
     6061 gcatccatct cgccggcgaa cttcttgccg gcccagccac gactgggtga tcaggctcgc
     6121 ggttttgagt tcgcgtcttc gcgtggccgc tcatcgactt tcagctatat tccacgcttc
     6181 ccacccagcc agaaaaaaga cacgaatgtt tcctgaaact ggcggccttt cgttgtttac
     6241 tgaaattgaa aggcccgcgg tttaagtcgg gtcatgtatc gcgattcagc gtgccggttg
     6301 ccctggcgca cgattcgcgc aggcttgctg gagcagagtg tcaatgaaaa gaattctctt
     6361 tctctttggt ctcctgtcgg tggccctgaa cctggccgca gcccaaaccc aaaccagaga
     6421 acgccgatca gccgatagcc aacctgaggt ccgcggcgac tcaacggctg tgcgtaatcg
     6481 cgtcgtcggt ccgactaaag ttgcgaacca ctcagaagga ccgaaagccg gcgccgcgcg
     6541 acaggaatcg gcttcatctg atcaggcttc cgatgcgaat gcccaactag tcaatgcgga
     6601 cgctaggaac ggcgtgcaac catcgtgggg cgaaaccgct gttgttacca aagttgtccc
     6661 ggaaaagttc gcaggctcat cgaaaacgcc gaacaacaaa gccacccagc cgagcccgaa
     6721 cgctcaagtc gggacgaaac tgatccaaca cacagcgttg attagagcgg cgccttctat
     6781 tcggttgatt gctccgccga ccgtcgccaa agtttcccct gctacagcat caacgtctcc
     6841 gacggccgcg actgcttctt atcgtgtagg cgtggatgat gttctggatg tacgtctcgc
     6901 aaatgcgccg acgagagaat caacgctctt cacgatcttg aaagacggaa cagttgaata
     6961 tccattgttg tccgggccag ttgtggtcgc gggcttgacg actgacgaga tcgctgggct
     7021 cttgagtaaa gagattaaag tgatcgccgg cgcgcgcgcg acggtaagcg tgcgtgatta
     7081 tgccagccac gtagttgttg ttacgggttt ggtggacaat ccaggaagaa aaactctgcg
     7141 gcgcgaatca atgccccttt actcggtgct tgccgaagct ttgccgcggc ctgaagccag
     7201 cgtcgctacg atcttgcggg ccggtaaaga gcaaacagtg tcgctggctg atgagaaggc
     7261 cacatcgact cttatcctgc caggcgacgt gctcaaaatc gcctccggca acgcgactcc
     7321 gaaacgattt ctttacgtgg gcggcgacgt tgcctctccg ggcgagaagg aatttcgtga
     7381 gggaatgact ctgactcagg ctttactgtc cgccggcggc gattcccgcg gcgcgaagat
     7441 cacagtgaag gtggcacgac ggaacgccaa cggctttctg gtgaccaacg aattcagcct
     7501 gcaatccatc gtcgagggga aattgcagga tcctctgctg atggccggag atcgaatcga
     7561 ggttgcgcgc ggcgtgtggt aagctgacga catgcgaaac tagtttggct gaagagagcg
     7621 gcgctatttt gagccgctct ttttctttgc ttgcagtctt g
//
LOCUS       DASZZE010000330         3353 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_139622, whole genome shotgun sequence.
ACCESSION   DASZZE010000330 DASZZE010000000
VERSION     DASZZE010000330.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3353)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3353)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3353
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_139622"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1454
                     /locus_tag="VHD88_06385"
     CDS             <1..1454
                     /locus_tag="VHD88_06385"
                     /inference="COORDINATES: protein motif:HMM:NF013998.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HVS21456.1"
                     /translation="SKDEGGRMKDEKFEGKSRKSLTRTRARKSSRQPHHNEKPSSLLS
                     RWRNAILGTLLVLAGLATALLTLMARRLEAPSLASAGAIASLIFVLLITVLVVPPLAR
                     SAYAEISRKRFPIDVTTGGVVFVIILVVVAFAAWNTGNNLLFMVFSIMASTLFVSWAA
                     ARASLRDLTVSARFPDHIFAGEPAEVIVLLRNAKRLFPSFSILVETRGASGKAEHAAA
                     KEKRAYFTTRTLGYFMYVPHRAAAEQRTEQLFSKRGHVFVNGFELSTCFPFGFFRHRR
                     RLSARDVDIVVYPKPEPIVDDLHLLPLHTGQTASFRRGAGHDLLLLRDYQPRDDIRHI
                     DWKATARTRRLTVREFAAEDDRRITIVLDTQLTEDIAKENFRIRFESGVTQAASLVKH
                     FIDERAEVCLVLGDQRGNFGTGQEHLYACLRRLALVNPNYETNANSWPDELAESVPLP
                     GHANDANYLIVLTAAARGSIPPHIWRRAFVIYL"
     gene            1518..1835
                     /locus_tag="VHD88_06390"
     CDS             1518..1835
                     /locus_tag="VHD88_06390"
                     /inference="COORDINATES: protein motif:HMM:NF016167.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF433 domain-containing protein"
                     /protein_id="HVS21457.1"
                     /translation="MNRDYVEKHEKGYRIAGTRVSLDSVVYAYLEGLRPESIADDFPA
                     LTLEEVYGAIAYYLGHREEVDAHLKQVDEQFPALKQRVRETYPLLNQKLDEVRERESL
                     THG"
     gene            1832..2176
                     /locus_tag="VHD88_06395"
     CDS             1832..2176
                     /locus_tag="VHD88_06395"
                     /inference="COORDINATES: protein motif:HMM:NF037832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5615 family PIN-like protein"
                     /protein_id="HVS21458.1"
                     /translation="MRVRFQADADFSQRIVSAVRRQESAIDFQTANAVDLRGIADLEV
                     LALAAREGRILVSHDLTTMPDNFATFVETTASAGLLIIRQKVSIRRALEEVLHVWMDT
                     DADDWINQMRVI"
     gene            2280..>3353
                     /locus_tag="VHD88_06400"
     CDS             2280..>3353
                     /locus_tag="VHD88_06400"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused MFS/spermidine synthase"
                     /protein_id="HVS21459.1"
                     /translation="MADTAGSQTLSPAQTYSRKVFSLIAICFLFSGVTGLIYEVVWAR
                     MLGLVFGATTLAIGAVLAAFMGGLALGSAVAARFASRIVRPVRAYAVIEIAIGIYALA
                     VPRLFRWIDLVYAEVWQHLHPGFYGFAFARFALAALVLIIPTALMGATLPLLAAAVTH
                     SSRSASNAVARLYTCNLAGALAGAIAAGFYLLPSFGVRATIWIVAAINLAVGVAAFLI
                     DAKVPESRSDEVEDIPASESTLQRAHSQSASDKRFWLFCAFISGFVTISMQVVWSRVL
                     AMIIGSSTYAFSIVLALFLTGLALGAYLVSLRKNQTVSSLRRKVLLIEVLTGASLFAS
                     IRVTNATPAFLVNAGFRVGVNSWS"
BASE COUNT          653 a          979 c          963 g          758 t
ORIGIN      
        1 agagcaagga tgaaggcgga aggatgaagg atgaaaagtt cgaggggaag agccgtaaga
       61 gcttaacgcg aacgagagca cgaaagtctt ctcgccaacc acaccacaac gaaaagcctt
      121 catccttgct ctcccgttgg cgcaacgcaa ttctgggaac gctgttggtc ctggccggat
      181 tggcgactgc gttactaacc ctgatggcgc gccgcctcga agcaccgagc cttgccagtg
      241 ccggcgcaat tgcttcgctc atcttcgtat tactgatcac ggtcctagtg gtgccgccgt
      301 tggcgcgttc ggcgtacgct gaaatatcgc gcaaacgttt cccaatcgac gtgacaaccg
      361 gcggcgtagt attcgtcata atccttgtcg tcgttgcgtt tgcagcgtgg aacaccggaa
      421 acaatttact cttcatggtc ttttcgatca tggcgtccac gctgtttgtt tcgtgggcgg
      481 cggcgcgcgc gtctctgcgc gacctgacgg tgtcggcgcg ctttcccgat cacatctttg
      541 ccggcgaacc cgcggaagtc atcgtcttgc tgcgcaacgc caagcgcctg ttcccgtcgt
      601 tttcgattct cgtcgaaacg cgaggcgcat ctggcaaagc ggagcacgcg gccgcaaaag
      661 agaagcgcgc atactttacg acgcgcactt tgggttactt catgtacgtg ccgcatcgcg
      721 ccgccgccga acaacgcacc gagcaattgt tttcaaaacg cggacacgtc ttcgtaaatg
      781 gattcgaact ttcgacatgc tttccgtttg gtttctttcg ccatcgccgc cggttgagcg
      841 cgcgtgacgt ggacatcgtg gtctatccca agcccgagcc gatcgttgac gatctgcacc
      901 tgctcccttt gcacactgga cagaccgctt cgtttcggcg cggcgcggga cacgatctgc
      961 tcttgctgcg cgactatcag ccgcgcgacg acattcgcca catcgactgg aaagctaccg
     1021 cccgcacgcg ccggctgacc gtgcgcgagt ttgccgcaga ggacgatcgt cgcatcacga
     1081 tcgtgctcga cacgcaactc accgaggata tcgccaaaga aaattttcgc atccgcttcg
     1141 aaagtggtgt cacccaggcg gcctctctgg tgaagcattt catcgacgag cgagcggaag
     1201 tctgcttggt gctcggtgac cagcgcggaa atttcggcac gggccaggaa catctgtacg
     1261 catgtttgcg ccggctggca ttggtgaatc cgaattatga gactaacgca aattcgtggc
     1321 cggacgaatt ggcggaaagc gtaccgcttc ccggtcatgc gaacgacgcc aactacctga
     1381 tcgtcttgac ggcggccgcg cgcggatcga ttccacctca catttggcgc cgagccttcg
     1441 tgatatattt gtgagcccct ctaagcacgc gcaatgactt acggcgccgt gctacaatgc
     1501 gctcgggatt gagaaccatg aatcgcgatt acgtggaaaa gcatgaaaag ggctaccgca
     1561 ttgccgggac ccgagtgtca ctggactcgg tggtctacgc ataccttgaa gggcttcggc
     1621 ccgaaagcat tgccgacgat ttcccagcgc ttaccttgga agaggtctat ggggcgatag
     1681 cgtattacct cgggcaccgc gaagaagtag acgcccatct caaacaagtc gacgaacaat
     1741 tccccgcctt gaagcagcga gtgcgtgaga cttatccgct gctgaaccag aaacttgacg
     1801 aagtgcgaga acgcgaatcg ctgacgcacg gatgagagtc cggttccaag ctgacgctga
     1861 cttcagccag aggatcgtca gtgccgtccg gcgtcaggaa tccgccatcg actttcaaac
     1921 tgctaacgcg gtagatttgc gcggcattgc cgatttggag gtgcttgcgc tcgcagcgcg
     1981 ggaaggccgg atccttgtat ctcacgatct cacgacaatg cctgataatt tcgccacatt
     2041 tgtcgaaact accgcgagcg ccggtctgct cataatccgg cagaaggtct ccattcgccg
     2101 cgctctcgaa gaggttcttc atgtgtggat ggacaccgac gctgacgatt ggattaatca
     2161 gatgcgggtc atttgattcc gtggcggcgc gcggatcgat tccacctcac atttggcgtc
     2221 gggccttcgt gatatatttg tgagcgctct agcacttgcc agcgaacaat ccgctctaaa
     2281 tggccgacac tgccggctct caaactctga gtcccgccca aacttactcg cgtaaggtgt
     2341 tttcgctaat cgcaatctgt tttctgtttt caggcgtcac tggcttgatt tacgaagtgg
     2401 tgtgggcgcg catgctggga ctcgtgttcg gcgcgaccac gctcgcgatc ggcgcggtgc
     2461 tcgccgcgtt catgggcgga ctggcattgg gcagcgcggt ggctgcgaga ttcgcttcgc
     2521 gaatcgtcag accggtgcgc gcttacgccg tgattgaaat cgccataggc atttacgcac
     2581 tcgccgtgcc acggctgttt cgctggatcg atttggttta cgccgaagtt tggcagcacc
     2641 tgcatcccgg cttctacgga ttcgctttcg cgcgattcgc gctggccgca ctcgttctca
     2701 taattccaac tgcgttgatg ggcgcgacgc tgccgttgct ggcagccgcc gtcacgcatt
     2761 cgagccgttc agcttcaaac gcagtcgcga gactctacac ttgcaatctt gcgggcgcgc
     2821 tcgccggagc gattgccgcc ggcttctacc tgctgccgtc gttcggcgtg cgcgcgacga
     2881 tctggatcgt cgccgcaatt aacctggcgg ttggcgtggc tgcgtttctg atcgatgcga
     2941 aagttccaga gtcgcgcagc gacgaagttg aagacattcc ggccagcgaa tcgactttac
     3001 aaagggcgca ttcgcaaagt gcgagcgaca agaggttctg gcttttctgc gcgtttattt
     3061 ccggcttcgt cacgatcagc atgcaagtcg tctggtcgcg cgtactcgct atgatcatcg
     3121 gctcgagcac gtacgcgttc agcatcgtgc tcgcgctatt tctcaccggc ctcgcgctgg
     3181 gcgcttatct ggtcagccta agaaagaatc agacagtttc gtccctgcgc cgaaaggttc
     3241 tgttgatcga ggtgctaacg ggcgccagct tgtttgccag catccgagtg acgaacgcga
     3301 ctccggcgtt cctggttaac gcgggctttc gcgtaggcgt caattcgtgg tcg
//
LOCUS       DASZZE010000331         1787 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_125785, whole genome shotgun sequence.
ACCESSION   DASZZE010000331 DASZZE010000000
VERSION     DASZZE010000331.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1787)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1787)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1787
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125785"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1260
                     /locus_tag="VHD88_06405"
     CDS             <1..1260
                     /locus_tag="VHD88_06405"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HVS21460.1"
                     /translation="VIARQASLVSEFDVNGMKVLVKRREGSQTVAAGLFIRGGSENIN
                     ANNAGIESFMLSAASEASAGFPRDRMRKELSRMGTVIGDSASYDYSVLSMTSTRANFD
                     HSWEVFTDVALRPLFTKIDFTLLQARLVTALHDEADDPDTYLQRLQEQVAYVGHPYLN
                     RPEGTPENISRMTADDLRAYHQKIMQTSQLLLVIVGDLDATQLKPRIAASFGKLPRGD
                     YKVQAPPQLSFSSSTVDVTSRPIPTNYVQGFFTAPPITSPDIYPMHVASSILRDRVFE
                     EVRVKRNLSYAPEAFLRSQSANIGGIYVTAVDANQAVRVMLNEIARLQHEPINQDDIK
                     AVVAQFLTAYYMGQETNAAQAAGLAQYELVGGGWHNSLLFLEKLRAVTPADVQRVAQK
                     YMRNIRFVVLGNPAQIDKNVFTGQQGN"
     gene            1452..>1787
                     /locus_tag="VHD88_06410"
     CDS             1452..>1787
                     /locus_tag="VHD88_06410"
                     /inference="COORDINATES: protein motif:HMM:NF014757.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding
                     domain-containing protein"
                     /protein_id="HVS21461.1"
                     /translation="MITVKKAAVLGAGTMGAQIAAHLANARIPVLLLDIAPRNDDTAE
                     TRPSGRVPNADDQKLDRNRIARDGFEAARKAKPAAFFTSDLASLVTVGNFADDLPKLK
                     DCDLIIEAVV"
BASE COUNT          385 a          542 c          494 g          366 t
ORIGIN      
        1 gtcatcgcgc ggcaggcttc gctggtttct gagtttgacg tcaacggcat gaaagtcctg
       61 gtcaagcgcc gcgagggtag ccagacagtt gccgccggac tttttattcg gggaggctcg
      121 gagaatatca acgcgaacaa cgccgggatt gagtcgttca tgctcagcgc cgccagcgaa
      181 gctagcgccg gctttcctcg tgatcgaatg cgcaaggaac tgtcgcgcat gggcaccgtg
      241 atcggcgaca gcgcaagcta cgattattcg gttctttcaa tgacctccac ccgggcgaac
      301 ttcgatcact cgtgggaagt tttcaccgac gtcgccctgc gtccattgtt caccaagata
      361 gacttcactc tcttgcaagc gcggctcgtt acggcgctac acgacgaagc ggacgacccc
      421 gacacttacc tgcagcgtct gcaggagcag gtcgcctatg tcggccatcc ctacttgaat
      481 cgccccgaag gaacgcccga gaacattagc cgcatgaccg ccgacgacct gcgcgcctat
      541 caccagaaga tcatgcagac gtcgcagttg ctgctggtca tcgtcggtga tctcgacgcg
      601 actcaattga agccgcgcat cgcggcatcg tttggaaagc tgccgcgcgg cgactacaag
      661 gttcaggcgc cgccgcaact ttcgttttca tcatcgactg tggacgtcac tagtcgcccc
      721 ataccaacaa attatgtgca gggcttcttt acggcaccgc cgattacctc gcccgatatc
      781 tacccgatgc acgtggcttc gtcaatcttg cgtgaccgag tgtttgaaga ggtccgcgtc
      841 aagcggaatc tttcgtacgc tcctgaagcc tttctgcgaa gtcagagcgc gaacatcggg
      901 ggcatctatg tcaccgcggt tgacgcgaat caggccgtgc gcgtgatgct caacgaaatc
      961 gcacggttgc aacacgaacc gatcaatcag gacgacatca aagccgtggt ggcgcagttc
     1021 ctcacggctt actacatggg ccaggaaaca aacgccgcgc aagcagccgg gctggcgcag
     1081 tacgaattgg tcggtggcgg ttggcacaac tcgctactgt ttctggaaaa actgcgcgct
     1141 gtcacaccgg ccgacgtgca gcgagtcgca caaaaataca tgcgcaacat ccgcttcgtc
     1201 gtgctcggca accccgccca gatcgataag aacgtcttca caggacagca gggaaactga
     1261 aacggagcgc ccgcatccgg agcgaaccta tcttacgcat ctctgcgtgt ggtccgcggg
     1321 catcttgcct gcggattcgg ggccactggc aagcttcgtt cgtgagcacg atactcatca
     1381 gccgcccgaa tagtttggtt gcctcttcaa agcttgctga atgagcgttc attcagtatt
     1441 atctggccgt catgattacc gtgaaaaagg ctgctgttct cggcgccggc actatgggcg
     1501 cgcagatcgc cgcgcatctg gcgaacgctc gcattcccgt tctcttgctc gacattgccc
     1561 cgcgcaatga cgacacggca gaaacccgac cgtcagggag ggtgccaaac gctgacgacc
     1621 agaaactcga tcgcaaccgg atcgctcgcg acggcttcga agccgcgagg aaagccaagc
     1681 ccgcggcatt cttcacttct gatctcgctt cactcgtaac ggtcggaaac tttgctgacg
     1741 atctgccgaa gctgaaagac tgcgacttga tcattgaagc agttgtc
//
LOCUS       DASZZE010000332         2227 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_109090, whole genome shotgun sequence.
ACCESSION   DASZZE010000332 DASZZE010000000
VERSION     DASZZE010000332.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2227)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2227)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2227
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109090"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..753
                     /locus_tag="VHD88_06415"
     CDS             <1..753
                     /locus_tag="VHD88_06415"
                     /inference="COORDINATES: protein motif:HMM:NF041359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntG family PLP-dependent aldolase"
                     /protein_id="HVS21462.1"
                     /translation="FSGALARPVHSNDGSGILTWDEIAGAIHKNTAYYVAPTGLIALE
                     NSHNLAGGSVLTRARTEDICARAHEMNLPVHLDGARIFNAAVALGETVAALARPADSV
                     MFCLSKGLGAPVGSMLLGGRAFIDEARVVRKMLGGGMRQAGVLAAAGLIALEESPKRL
                     HEDHANARLLAEGLAALPGVKIDPEQVVTNIVIFDVAETGMTADAICAQLRERGVLGS
                     GFGSAIRMVTHYDVSRSDIETALRELRSVLDN"
     gene            867..2012
                     /locus_tag="VHD88_06420"
     CDS             867..2012
                     /locus_tag="VHD88_06420"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0030420 - establishment of competence for
                     transformation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HVS21463.1"
                     /translation="MKRSTRGCGCAIAVLVLLFGAGAIGFWKFGLPWWRARAPKPTGE
                     LQVHVLDVGPVEGDSILIIAPGGKSVLIDAGDAGKGKVVLEALKRYKVDHLDYFIATH
                     PHPDHIGGADEVLSAIKVGTVIDNGVDLSTPVPEATPGSKGSKAKTTPSPPPKKRKTK
                     TVNSFFDEYAAALKQNGAQHEKAQPGKKYDLGGGAILTVLGPTEPFFTKDQVKAGGNE
                     TNANSIVLRLDYGEFSMLFMGDAEAQTEERMLGKDLNLKANVIKVAHHGSKYATTENF
                     VKRAQPEAAIISDGAWNRYGHPTQVVLDRLKAANVKLYRTDLQGEVTITSKGKLDSGK
                     LYDIKTAKETKEDIWAGREAQKDDSSRSGFIAYGDFGPPPKTSKGKK"
BASE COUNT          492 a          620 c          696 g          419 t
ORIGIN      
        1 ttctcaggcg cgctggcccg tccggttcac agcaacgacg gcagcggcat cctcacctgg
       61 gacgaaattg ccggcgcgat tcataagaac accgcgtatt acgtggcgcc gacgggactt
      121 attgcgctcg agaattctca caacctcgcg ggcggctcgg ttttgacgcg cgcacgcacg
      181 gaagacattt gcgcgcgggc tcacgaaatg aatttgccgg tgcatctcga cggcgcgcgt
      241 attttcaacg ccgcagtcgc gctcggcgaa acggtcgccg cgctcgcgcg tcccgcggat
      301 tcggtgatgt tctgtctgtc gaagggcctg ggcgcaccgg tggggtcgat gctgctcggc
      361 ggccgcgcct tcatcgatga agcgcgcgtc gtccgcaaga tgctgggcgg cggcatgcgc
      421 caggccggcg tgctggctgc ggccggtttg attgcgctcg aagaatcgcc aaagcgtctg
      481 cacgaagatc atgccaacgc gcgcctgctc gctgagggtt tggcggcgct gccgggcgtg
      541 aagatcgatc cggagcaagt tgtcacgaac atcgtgatct tcgacgtggc tgaaaccgga
      601 atgactgctg acgcgatctg cgcgcaactg cgagaacgcg gcgtgctcgg gtcagggttc
      661 ggctcggcca tccgcatggt cacgcactat gacgtttctc gatctgatat tgagacagcg
      721 ctgcgagaac tgcgaagcgt cctggataac taatcattta ccacagagga caccgaagaa
      781 gaacgggaat tagaggaacc tgggcgttgt ttccaattgc ttcttgtttt ctcggagtcc
      841 tttgtggtta agaactgagt cctaaggtga agcgaagtac acgcggatgc ggatgtgcga
      901 ttgcggtgct cgtgctgctg ttcggcgccg gcgcgattgg gttctggaag tttggcttgc
      961 cgtggtggcg tgcgcgcgcg ccgaagccca cgggagagtt gcaggttcac gtgctcgacg
     1021 tcggaccagt ggaaggtgat tcgattctaa tcatcgctcc cggcggcaaa tccgttctga
     1081 tcgacgcggg cgacgcgggc aaaggcaaag tcgtgctgga ggcgctgaag cgttacaaag
     1141 tcgatcacct ggattatttc atcgccacgc atccacatcc cgatcatatc ggcggcgcgg
     1201 atgaagtgct cagcgccatc aaagtcggaa ctgtaatcga caacggcgtc gatctctcca
     1261 cgcccgtgcc ggaagcgacg ccgggcagca aagggtcaaa ggcgaagact acaccgtcgc
     1321 cacctccgaa aaagagaaaa acaaaaacgg tcaacagctt cttcgatgag tacgcggccg
     1381 cgctgaaaca aaacggcgcg cagcacgaaa aggcgcagcc gggaaagaaa tacgatctcg
     1441 gcggcggcgc gattctgact gtgctcgggc ccacggagcc cttcttcacg aaagatcaag
     1501 tgaaagccgg tggcaatgag accaacgcca actcgatcgt gctgcgactg gattacggcg
     1561 agttctcgat gctgtttatg ggcgatgccg aagcgcagac cgaagagcgg atgctcggca
     1621 aagatctgaa tctgaaagca aacgtgatca aggtcgcgca ccacggatcg aagtatgcga
     1681 ccacggaaaa ctttgtgaag cgcgcacaac ccgaggccgc tattatttct gacggcgcgt
     1741 ggaatcgtta cggccatccg acgcaagtcg tgctggatcg cttgaaagcg gcgaacgtga
     1801 aactctatcg cacggatttg cagggcgagg tcacaattac gtccaaggga aaactggatt
     1861 cgggaaagct gtacgacatc aagactgcta aagaaacaaa ggaagacatc tgggccggcc
     1921 gcgaagcgca gaaagatgat tcgtcgcgtt cgggttttat tgcatacggt gatttcgggc
     1981 cgcccccgaa aacgtcgaaa ggaaagaagt gactgaatgc tgggaacgcg ggcgccctcg
     2041 cccgcccagc gtgcgcagca cgctcaagac agttctcatt tgtgcccgat ctctggatta
     2101 acgaacgact tctttttcgc gcttgcgcgc tcagtgcggg cgagggcgcc cgcgctccca
     2161 gttagcacga tgaaggcacc aacaacttat cgcgacgccg gcgtgaacat cgacgccgct
     2221 aaccgcg
//
LOCUS       DASZZE010000333         1957 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_171152, whole genome shotgun sequence.
ACCESSION   DASZZE010000333 DASZZE010000000
VERSION     DASZZE010000333.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1957)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1957)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1957
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_171152"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..617
                     /locus_tag="VHD88_06425"
     CDS             <1..617
                     /locus_tag="VHD88_06425"
                     /inference="COORDINATES: protein motif:HMM:NF024771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="enolase C-terminal domain-like protein"
                     /protein_id="HVS21464.1"
                     /translation="IRRAQLIRDEIGPDRTLMMDANQVWNVGQAIEWMKQLKRFQPLW
                     IEEPTSPDDILGHAAIARAVAPIGVATGEACHNRVMFKQFLQAKALDFCQVDSCRLGG
                     VNEVLAVLLMAAKFGVPVCPHAGGVGLCEYVQHLSIFDYIAVSGSLENRRVEFVDHLH
                     EHFVYPVEIRNGNYLAPLAPGYSIEMKPESIKQYEFPGGEAWAS"
     gene            878..1804
                     /locus_tag="VHD88_06430"
     CDS             878..1804
                     /locus_tag="VHD88_06430"
                     /inference="COORDINATES: protein motif:HMM:NF013706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HVS21465.1"
                     /translation="MKLAQFKTNESAEQRLGVLLGDVVYDVAKLARALKESGAGPPSW
                     LLQANRTQDVISRGESAVRDIGALLTDIQIGSGLDQITALPLDSIEFLPAVYPSKILA
                     IGRNYVDHAIEGGAAPPEAPLIFNKLTSSLNAHNAPIVLPPISNKVDYEAELAVVIGR
                     RTKRVSEAEALDYVFGYTLIDDVSARDLQFGDGQWTRGKGLDTFAPLGPFITTRDEIK
                     DVQALKIEGRLNGEVMQSSNTGKMIFKVAYLVSYLSQGMTLEPGDVIATGTPEGVGVF
                     RDPPVLLKAGDVFEVEIEGLGTLRNPVIAAEK"
BASE COUNT          454 a          526 c          565 g          412 t
ORIGIN      
        1 acatcagacg cgcccaactc atccgcgacg aaatcggacc cgatcggacg ctgatgatgg
       61 acgcgaatca ggtgtggaac gtcggccagg caatcgaatg gatgaaacag ctaaagcgtt
      121 tccaaccgct gtggattgaa gagccgacca gccccgatga catccttggt catgcggcca
      181 tcgcgcgcgc cgtcgcgccg attggcgtgg ccaccggcga agcttgccac aaccgcgtga
      241 tgttcaagca attcctgcaa gccaaagctc tggacttttg ccaggttgat agctgccgtt
      301 taggtggtgt caacgaagtg ctcgcggtgt tgctaatggc tgcgaagttt ggcgtgccgg
      361 tctgtccgca tgcaggcggc gtcgggctct gcgagtacgt gcagcatctc tcaatcttcg
      421 actacatcgc agtgagtggt tcactggaaa atcgccgggt cgagtttgtc gatcacctgc
      481 acgaacactt tgtttacccg gtcgagattc gcaatgggaa ttatctcgcg ccgctcgccc
      541 ccggctacag catcgagatg aagcctgagt cgatcaagca atacgagttt ccgggcggcg
      601 aagcgtgggc gagttgatct aatgtccgac aaacttcagt ttgtcgtttg cgctgcgtat
      661 gaggggatca gggcaaaatg ttctgcggac ccaattcacg gctcgaatga attaagacat
      721 cgacaaacta agaagatcac tgaagccggc gccctgtcgc cgatcattga cagctttggt
      781 gtcacgaaca ttatttgcgg tcacgttcga tgaatttcag cggcggcgat tggagaccgc
      841 cggatcatga atcaactctt gggagcgaaa gacacagatg aaactggcgc agttcaaaac
      901 aaatgaatcg gctgagcaac ggcttggcgt gctgctcggc gatgtcgtct acgatgttgc
      961 aaaactggct cgggcgctca aagagtccgg cgcgggaccg ccgagctggt tgcttcaagc
     1021 taaccggact caggatgtca ttagccgcgg cgagtcagcc gttcgcgaca tcggggccct
     1081 cttaactgat attcagatag gttctggact ggaccagatc accgccctgc cgcttgattc
     1141 gatcgaattc ttacccgccg tctatccaag caaaatcctg gctatcggtc gtaactatgt
     1201 tgaccatgcg atcgaaggtg gcgcggcacc accggaagcg ccgcttatct tcaacaaact
     1261 gaccagttcg ctgaatgctc ataacgcgcc aatcgtgctg ccgccgatca gcaacaaagt
     1321 cgactatgaa gccgaactgg cggtggtgat cggtcgcaga accaaacgcg tcagtgaggc
     1381 cgaagcgctc gattatgttt ttggatacac attaatcgac gacgtcagcg cgcgcgacct
     1441 gcaattcggc gatgggcaat ggacgcgcgg caaaggcctg gacacgtttg cgcccctcgg
     1501 tccgttcatt actacccgcg acgagatcaa ggacgtgcag gctctcaaga tcgaaggccg
     1561 gctgaacggt gaagtgatgc agtcatcaaa caccggcaag atgatcttta aagtcgctta
     1621 tctcgtctca tatctttcgc agggcatgac gctggagccg ggcgacgtga tcgcgaccgg
     1681 aacacccgaa ggcgtgggcg tctttcggga tccgccagtg ctgctgaaag ccggagacgt
     1741 ctttgaagtc gagatcgaag ggctgggcac gctacgtaat ccggtgatcg cagcggaaaa
     1801 gtaggccccg gattcacgat cggaaacggt aacaagttaa aagatttgct tgcgggcaag
     1861 ttggtttgcg cttaacatgt aggccaatcc ggttcacttc aagttccgtt cgccgtcatc
     1921 ccacgaacat aggaggagac gaatgtcaga cgatcac
//
LOCUS       DASZZE010000334         4834 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_29367, whole genome shotgun sequence.
ACCESSION   DASZZE010000334 DASZZE010000000
VERSION     DASZZE010000334.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4834)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4834)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4834
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29367"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1004)
                     /locus_tag="VHD88_06435"
     CDS             complement(<1..1004)
                     /locus_tag="VHD88_06435"
                     /inference="COORDINATES: protein motif:HMM:NF019135.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HVS21466.1"
                     /translation="MVYRSCSLVLLLVCFPWHANAERLPIKTYTIADGLAHNEINKIV
                     RDSRGFLWFCTADGLSRFDGYTFTNFGTDQGLPHANVTDLLETRSGEYWVATYGGIAR
                     FNPKGAPVNRVVYAGEAGAIAPMFTVIVPEDQDRRAKAINVLLEDRNGTIWCGTRKGL
                     HRLEDANGRLALREVDVGIPEEYPEQRIVSDLLEDRYGSLWIAAPSGLYRRWPDGAAA
                     RYTTREGLPNNYLQDLLEDHQGRLWVGTRLGGFFRIIADDTHSPPAIAQAFTSKDGLP
                     SFWVFQLFEASDGRFWVATASGLAEFFPESDEQGRRFHAYSEKNGLSYHDITALNEDL
                     G"
     gene            complement(1156..1611)
                     /locus_tag="VHD88_06440"
     CDS             complement(1156..1611)
                     /locus_tag="VHD88_06440"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon monoxide dehydrogenase subunit G"
                     /protein_id="HVS21467.1"
                     /translation="MKIEGTHELHAPRERVYAALIDPEVLQRCIPGCESLEKTDENSY
                     AAILKAGVGAIKGTFKGNVKLEDMRAPEHYRIVVDGKGGPGFVKGSGDFDLEEKNGGT
                     LIKYTGEMQVGGTIAGIGQRMIQGAAKMMASRFFTALEAEAQTAPGARK"
     gene            complement(1721..2581)
                     /locus_tag="VHD88_06445"
     CDS             complement(1721..2581)
                     /locus_tag="VHD88_06445"
                     /inference="COORDINATES: protein motif:HMM:NF013134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein subunit M"
                     /protein_id="HVS21468.1"
                     /translation="MIPAQFDYQRANTLDEALTLLSQSEDAKILAGGHSLIPAMKLRL
                     AQPPLLIDIGRIKDLAYIRQENSQIRIGAMTTHYQIESSDLLKKICPLLPECASHIGD
                     VQVRNKGTIGGSLAHSDPAGDWPAAIIALNAELVAISKNGERTIKADDFFVDLLTTAL
                     EPGEILREIRINKPSDRTGQAYVKMHHPASGFAVVGVAANLTFDGDNCKNASIGITGV
                     SSKAYRATGVETELTGRKLDEQTIANAASHATDDVEANGDLFASADYRRHLAAVYTKR
                     ALTMAASRAR"
     gene            complement(2607..>4834)
                     /locus_tag="VHD88_06450"
     CDS             complement(2607..>4834)
                     /locus_tag="VHD88_06450"
                     /inference="COORDINATES: protein motif:HMM:NF042649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein
                     molybdopterin-binding subunit"
                     /protein_id="HVS21469.1"
                     /translation="KAPGVVAVYTGKDVAEKVGPVPCASALPDLKVPDYRVLATDKAL
                     FVGHPIAAVVATDKYLARDAVDLISVDYEELPAVVDVEAAAKGGTVIHEKFGDNIAYK
                     LTSGEGDIEAAMKSSDHVVKQRMVHQRLAPMAMEPRGVLARYFPGEEELTIWSSTQIP
                     HLLRTQLALMIGIPENKLRVITPEVGGGFGSKLNVYAEEALLGWISMQLGKPAKWIES
                     RRENVQATIHGRAQVGTVEVGCRNDGTITGLRYNVFADLGAYHQLLTPAIPTLTGLML
                     SGAYKIPAIQMNVTGVFTNKMSTDAYRGAGRPEATYVVERAMDIVAAELKMDPVEVRR
                     KNFPAANEFPFHTATGLDYDSGNYEAALDKALDLSGYAKLRADQKKARAEGKLIGIGM
                     SSYVEICALGPSQAMPAGGWESATVRIEPTGKVTIMTGASPHGQGQETSFAQIAADEL
                     GVDLHDITVIHGDTAIVQYGIGTFGSRATAVGGTAVLIAIQKLKEKAAKIAAHILQAD
                     AARLAFEGGRYSLQTAAAAATGVSDPVVSVGEAPAGALPEPQTEGRSSLTIQEIALAA
                     HIAKELPPDTEPGLSATYFFEPKNFTFPFGTHICVVEIDKETGETKIVRYVAVDDCGK
                     VINPLLVDGQLHGGIVQSIGQALYEEVVYDEQGQLITGELMDYALPKASQIPWMELDR
                     TETPSPVNPLGVKGVGEAGTIGATPAIVNAIVDALSPYGVKHIDMPARPETVWKLIPR
                     E"
BASE COUNT          961 a         1435 c         1339 g         1099 t
ORIGIN      
        1 ccgaggtctt cgttgagcgc ggtaatgtcg tgataactca agccgttctt ctcactgtag
       61 gcatgaaacc tccggccctg ctcgtcgctc tcagggaaga actccgcaag tccgctggcg
      121 gtcgctaccc agaatctgcc gtctgaagcc tcaaagagtt gaaaaaccca gaagcttggc
      181 aggccgtctt tggacgtgaa cgcctgcgcg atagcgggcg gactgtgcgt gtcatcggcg
      241 atgattcgga agaagccgcc gagtcgtgtc cctacccaca gtcggccctg atggtcctcg
      301 agcaagtcct gaagatagtt gtttggcaat ccttcgcgcg tggtgtagcg cgccgcggcg
      361 ccgtccggcc agcggcgata cagcccgctc ggcgcggcaa tccaaagcga gccatatcga
      421 tcctccagca ggtccgaaac gatgcgctgt tccggatatt cttcaggaat gcctacatca
      481 acttcgcgca aagctaatcg cccgttcgcg tcttcaaggc ggtgcaagcc tttccgcgta
      541 ccgcaccaaa tcgtgccgtt gcgatcttcg agcagcacat tgatggcttt ggcccgccgg
      601 tcttgatctt ccggaacgat cacggtaaac atcggcgcga tcgcacctgc ctcgccggca
      661 tagaccacgc ggttaacagg cgcgcccttc ggattgaagc gcgcgatgcc gccgtaggtc
      721 gccacccaat actcgccgct gcgagtctcc agaaggtcgg tgacgttggc atgcggcaag
      781 ccctggtccg tcccgaagtt cgtgaacgtg tagccgtcaa atcgcgatag gccgtctgct
      841 gtgcagaacc agaggaaccc gcgcgagtcc cgcacgatct tgttgatctc gttgtgcgcc
      901 aaaccgtcgg cgatggtgta agtcttgatc ggcaggcgtt cagcattggc atgccacggg
      961 aaacacacga gcagcagcac caagctacaa gatcggtaaa ccactttcga tttgcaacgc
     1021 acgacaggca accagctaag acttttctga aagagaggca cgggtgttat cgctggcgtt
     1081 ccgtttgaac attcttcgga gccaccctga gaaccacctc aggcgagtga aaaaagagcc
     1141 tgcttcggcg gcgagtcatt tgcgcgcgcc cggagcagtt tgtgcttccg cttcgagcgc
     1201 ggtgaagaat cgcgaggcca tcattttcgc cgcgccttga atcatgcgct ggcctatgcc
     1261 ggcaatcgtg ccgcccactt gcatctcgcc cgtgtatttg atgagcgtgc cgccgttctt
     1321 ttcttcgaga tcgaaatcgc ccgagccttt cacgaatccc ggcccacctt ttccgtcaac
     1381 cacaatgcgg taatgttccg gcgcccgcat gtcttccagc ttcacgttgc ccttaaaggt
     1441 tcctttgatt gcgccgacgc cggctttcag aattgcggca taagagttct cgtcggtttt
     1501 ttcaagagat tcacagccgg gaatgcagcg ttgcaggact tcgggatcga tgagcgccgc
     1561 atagacgcgt tcgcgcggcg cgtgtagttc gtgagtgcct tcgatcttca tttagggtgg
     1621 gtctagggtg tagagtgcta ttcagacgaa tttgatttgg attgcatcgt gaatctgccg
     1681 ccctcgatct tttctacacc ccacaccaca cccaaaaccc tcatcgggcg cgcgacgcag
     1741 ccatcgtgag tgcgcgcttc gtgtagaccg cagccagatg ccttcggtaa tcagcggaag
     1801 caaacagatc tccattcgcc tcaacgtcat cggtcgcgtg tgacgccgcg ttcgcgatcg
     1861 tctgttcgtc caacttgcga ccggtcaatt ctgtctcaac tccggttgcg cgataagctt
     1921 tggatgacac accagtgata ccgatgctcg cattcttgca attgtcgccg tcgaacgtga
     1981 gattcgccgc gactccgacg accgcgaatc ccgatgcggg gtgatgcatc ttcacataag
     2041 cttgacccgt gcgatcgctc ggtttattga tgcgaatctc gcgcaaaatt tcgcccggct
     2101 cgagagcggt cgtcagcaga tcgacaaaga agtcgtcggc tttgattgtg cgctcaccgt
     2161 tcttgctgat cgcgaccaac tcagcgttca gagcaattat cgctgccggc caatcaccgg
     2221 ccggatcaga gtgagcgagg ctgccgccga tcgttccctt atttctgact tgcacatcac
     2281 caatgtgcga tgcgcattca ggaagcagcg gacaaatctt cttcagcaag tccgacgatt
     2341 caatctggta atgcgtggtc atggcaccga tgcgaatctg actgttctct tggcggatgt
     2401 aggcgaggtc tttgatgcgg ccaatgtcta tgagcagagg cggctgcgcc aggcgcagct
     2461 tcatcgccgg aatcaaactg tgtccgccgg cgaggatctt ggcgtcttca ctttgcgaca
     2521 gcagcgtcag cgcttcatca agcgtgttcg cacgttggta atcgaattgt gctggaatca
     2581 tgatggcctc ctctatcctc taagtcctat tctcgcggga tcaatttcca aactgtttct
     2641 ggtctcgccg gcatatcgat gtgcttcacg ccatacggcg acaaagcgtc aacgattgca
     2701 ttcacgatcg ccggcgttgc gccgatcgtc ccggcttcgc ccacgccttt gacgcccagc
     2761 gggttgaccg gcgaaggcgt ttcagttcga tcgagttcca tccacggaat ctgcgaagcc
     2821 ttcggcagcg catagtccat caactcgccg gtgatgagct gcccttgttc gtcgtacacg
     2881 acttcttcgt agagcgcctg gccgatcgat tggacgatgc cgccgtgcaa ttgcccgtca
     2941 accagcaggg gattgatcac cttgccgcaa tcgtcaaccg cgacgtaacg aacgatcttt
     3001 gtctcgccgg tttctttatc gatctcaacc acgcagatgt gcgtgccgaa cggaaatgta
     3061 aagttcttcg gttcgaaaaa gtaagtcgcg gataggcccg gctcagtgtc aggaggaagt
     3121 tctttcgcga tgtgggctgc cagggctatt tcctgaatcg tcagactcga cctgccttct
     3181 gtctgtggct caggcagagc gccggcgggc gcctcaccca cggaaacgac gggatcggaa
     3241 actccggtgg cggcggcggc cgcagtctgc aaagaatatc ggccaccttc gaatgcgagt
     3301 cgcgctgcat cggcctgcaa aatatgcgcg gcgatcttcg cggccttctc tttcaacttt
     3361 tgaatcgcga tcagcacagc cgtgccgcca accgcggtcg cgcggctccc aaaagtgccg
     3421 atgccgtatt gcacgatcgc ggtgtcgccg tgaatcacgg tgatgtcgtg caaatctaca
     3481 ccgagttcgt cggcggcgat ttgcgcaaat gaagtttcct gaccctgacc gtgaggcgat
     3541 gcgccagtca tgatcgttac ttttccagtc ggctcgatgc gcaccgtcgc gctttcccag
     3601 ccacccgcag gcatcgcttg tgatgggccg agcgcgcaga tttcgacata gctcgacatg
     3661 ccgatgccga tcagcttgcc ttcagctcgc gctttctttt gatctgcgcg cagcttcgcg
     3721 taaccggaaa gatcgagagc tttgtcgagc gcagcttcgt aattgccgct gtcgtaatcc
     3781 agtccggtgg cggtgtgaaa cggaaactcg tttgcagcgg gaaagttctt tcgccttact
     3841 tcgacgggat ccattttcaa ttcagccgca acgatatcca tcgcgcgctc gaccacgtaa
     3901 gttgcttccg gccgtcccgc gccgcgataa gcgtcggtgg acatcttgtt ggtgaagacg
     3961 ccggtgacgt tcatttggat cgcgggaatt ttgtatgcgc ccgacagcat cagccccgtc
     4021 agcgtcggaa tcgcgggtgt taaaagttga tgataagcac cgagatcggc aaagacgttg
     4081 taacgaagac cggtgatcgt accgtcattc ctgcaaccga cttcaaccgt tccgacctgg
     4141 gctcggccgt gaatcgttgc ctgaacattt tcgcgtcgcg actcgatcca cttcgctggc
     4201 ttgccgagct gcatcgaaat ccaaccgagc agggcctctt ccgcgtaaac gtttagcttc
     4261 gaaccgaaac cgccgccaac ttccggcgtg atcacgcgca gcttgttttc cggaatgccg
     4321 atcatcaggg cgagttgcgt gcgcagcaag tgtggaatct gcgtcgatga ccagatagtc
     4381 agttcttctt cgccgggaaa ataccgggcc agcacaccgc gcggctccat ggccatcggc
     4441 gcgaggcgtt gatgaaccat gcgttgcttg acgacgtggt ccgatgattt catcgctgct
     4501 tcgatgtcgc cttcgccgga agtcagcttg tacgcgatgt tgtcgccgaa cttttcatga
     4561 atcaccgtcc cgccttttgc tgcggcttcg acatcgacga cggcgggtag ttcttcataa
     4621 tcaactgaaa tcagatcgac tgcatcgcga gctaaatact tatccgtcgc aacgactgcg
     4681 gcgatcggat gaccaacgaa gagcgctttg tcggttgcga gcacgcgata atccggaacc
     4741 ttcaaatcgg gaagggcact tgcgcaaggc accggcccaa ctttctcagc gacatctttg
     4801 cccgtgtaaa cggcgaccac accaggagcc ttca
//
LOCUS       DASZZE010000335         3830 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_321967, whole genome shotgun sequence.
ACCESSION   DASZZE010000335 DASZZE010000000
VERSION     DASZZE010000335.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3830)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3830)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3830
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_321967"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(338..1315)
                     /locus_tag="VHD88_06455"
     CDS             complement(338..1315)
                     /locus_tag="VHD88_06455"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HVS21470.1"
                     /translation="MTTRRDFLRTAAVAGLSLPLARSTSLFHWVDPALSIAAPLLRPA
                     SGETLITILHTNDTHSQIDPILENDKTYAGKGGVARRATLVKRVRKENPNTLLIDGGD
                     VCQGTPYFNFYRGEVEYKAMSLIGYDAGTIGNHEFDNGVESLAKALTFANFDIVSTNY
                     DVRGSALESKVKTHVVKEVGGVRVGLFGLGISPKGLITPDNFKPLQYLDPVRMARGVT
                     KLLREQEKCTLVLGMSHLGYYPDAKNGEVGDTQVVAQVDGIDFIASGHTHTFMEKPVL
                     QKTPSGKDTIIFQVGRGGIYVGRVDFTLRDGKVTAYAGRLLDLRDESLS"
     gene            complement(1312..2178)
                     /locus_tag="VHD88_06460"
     CDS             complement(1312..2178)
                     /locus_tag="VHD88_06460"
                     /inference="COORDINATES: protein motif:HMM:NF014871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0009166 - nucleotide catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase C-terminal domain-containing
                     protein"
                     /protein_id="HVS21471.1"
                     /translation="MMHKSVRKAVSSRWLILLLLLISAPLAVAQQPAPQASPTKQAPA
                     ARDVHARVTETLIDASIKDDPAVDQMLAVYGPKVRALDVVIGKLKGELRKGGAGSGSL
                     GNFVADGMRAQASIKLGKSVDLALMNGGGLRRNAIGEGELRARDIFELLPFENALVTL
                     DLTGEQLLKLLGVVASSREAQSGARVTYVIKADKSSQLEAAKLPNREIDPKETYTVVT
                     IDYLVNVGGDRYAVLLEGKNTRPLGITLRDAIMDYVKSETAAGRDIKPNLDGRFVLDR
                     ANSVLSGEAPPK"
     gene            2446..2988
                     /gene="hpt"
                     /locus_tag="VHD88_06465"
     CDS             2446..2988
                     /gene="hpt"
                     /locus_tag="VHD88_06465"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: protein motif:HMM:TIGR01203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006166 - purine ribonucleoside salvage
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HVS21472.1"
                     /translation="MSEFTNPSLEPLITAEAIQARIKELGAEIARDYAGKNPLLIGVL
                     KGAFIFLGDLMRAIEIPLGIEFIAISSYGAEMRTSGEVRILKDLDVPIEGRHILVVED
                     IVDTGLTLSYLLANLKSRGAASVKLAALLDKYERREKEVPIDYLGFKIPDKFVVGYGL
                     DFAERYRNLPFIAVLKNPEV"
     gene            complement(3108..>3830)
                     /locus_tag="VHD88_06470"
     CDS             complement(3108..>3830)
                     /locus_tag="VHD88_06470"
                     /inference="COORDINATES: protein motif:HMM:NF024298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HVS21473.1"
                     /translation="EISQNAATVAEVDDGKRLHLWDITTGYETIFEESDPNTSAIGLS
                     ADGKVVAIAHHDRVALMNTFDRKSLGGLVLRGGNISRIAFSSDARTLATSSEDRAIQI
                     WNLATGQIEKTMTSNANVTALRLAPDGRMLASASEDGIVSLWDWQTGSLILQLKKHSA
                     AVNAIAFSPDGTMMATGGDDRTVILWETANGKSRRTLKGHDLTVASLAFSPDGSLLAS
                     GSGNASVVLWDVKTGKLDRVLK"
BASE COUNT          817 a         1083 c         1061 g          869 t
ORIGIN      
        1 cacgagtttt gcggattcgt cgcgtgttac gttgctcgaa gatgacggcg tgacattggg
       61 gatcgccgag gaacgcgagt tgagtttagt cgcttcggct ggaactgctt tattcagcac
      121 gtcacgaacc agcgcgcgaa ctcgatctct ggttgcatca tcggccatag tcaaaaggac
      181 tcgacaaagt tttcgctccg taggagcgat tgaaaatagc ccagccattc atggctgggg
      241 acacgcgcca gtttattaag ccacgattcc cagcgatgaa tcgctgggct attatcaaac
      301 gtcgcttcgg gacgatacaa agaaactgtg tggccgatca cgacagcgat tcatctctca
      361 gatcaagcag ccgtcccgcg tacgccgtca ctttcccgtc gcgtagagtg aaatctacac
      421 gcccgacgta aatcccgccg cgaccaacct ggaagatgat cgtgtctttg cccgatggag
      481 tcttttgcag cacgggcttt tccatgaacg tgtgcgtgtg tccgctggcg atgaagtcta
      541 tgccgtcaac ttgcgctacg acttgagtat cgccaacctc gccgttcttc gcgtcgggat
      601 agtaacctag gtgcgacatg ccgagcacca acgtgcattt ttcctgttcg cgcaaaagct
      661 tcgtgacgcc gcgcgccatg cgaacgggat cgagatactg aagcggcttg aagttgtcag
      721 gtgtgatcag acccttcggg ctgattccta aaccgaacaa tccgacgcgc acgccaccaa
      781 cttccttcac gacgtgagtc ttgaccttgc tctccagtgc gctgccgcgc acgtcatagt
      841 tggtcgagac gatatcgaag ttagcgaacg tcaaggcctt ggccagcgac tcgacgccgt
      901 tgtcgaattc gtgattaccg atcgtgcccg cgtcatagcc aatcagagac atcgctttgt
      961 attcaacttc gcctcggtaa aagttgaagt acggcgtgcc ttggcacaca tcgccgccgt
     1021 caatcagaag cgtgttagga ttttctttgc gcacgcgctt gaccagcgtc gcgcggcgcg
     1081 ccacgccacc tttgccggca taggtcttgt cgttttccag aatcggatca atctgcgagt
     1141 gcgtgtcgtt tgtatgcaga attgtgatta aggtttcgcc gcttgccggc cgcagcagtg
     1201 gcgcggcaat cgacagcgcc gggtcgaccc aatgaaacag ggacgttgag cgcgccagcg
     1261 gaagtgacag gcccgcgacg gctgcagttc tcaagaaatc tctgcgcgta gtcatttcgg
     1321 tggcgcctcc ccgctcagga ctgagttagc tctatccaaa acaaagcgcc cgtcgagatt
     1381 tggtttaatg tcgcgaccgg ccgcggtttc ggatttcaca taatccatga tggcgtcgcg
     1441 cagcgtgatg cccagcggcc gtgtgttctt tccctcgagc aggaccgcgt accgatcgcc
     1501 gccgacgttg actaagtaat caatcgtcac gacggtgtag gtttctttcg gatcgatctc
     1561 tctattggga agcttggccg cttcgagctg agaactcttg tccgccttga tcacgtaagt
     1621 gacgcgcgca ccagattgcg cttcgcggct ggacgcaacg acgccgagca gcttgagcaa
     1681 ttgttcgccg gtcagatcga gcgtgaccaa agcattttcg aaaggcagca actcgaaaat
     1741 atcgcgggcg cgaagttcac cttcgccgat cgcattgcgt cgcaagccac cgccgttcat
     1801 gagtgctaga tcaacactct tcccgagttt aatgctcgcc tgcgcgcgca tgccgtcagc
     1861 cacaaaattg ccgagggaac ctgagccagc gccgcctttt ctcaactcgc ctttcaattt
     1921 tccgattaca acgtcgagcg cgcgcacctt cggaccgtaa accgcgagca tctgatcgac
     1981 cgccggatcg tccttgatcg acgcgtcgat cagagtctct gtgacgcgcg cgtgaacgtc
     2041 gcgcgccgcc ggagcttgct tggtcggaga agcctggggc gcgggttgct gtgcgactgc
     2101 aagcggcgcg cttatcagca acagcaaaag aatcagccag cgcgatgaaa cagcttttcg
     2161 aacagatttg tgcatcatca attcctgatt caaacgtgga aggcaaaata taacaggtca
     2221 atcgcgtctc gtgaattgac ctgcgcggag agccgcaata gtatctcgca gcagtggcgc
     2281 gcgcgcaaac ggaaatgcag tgttcagtgg gcggtgatcg gtggtcagtt cgagttcgac
     2341 tgatctggtt tttgcgccga atcacgccgc gtgctccgaa gtaataaatg aactagaatc
     2401 ttttgaaggg aaacgaaacc tttgtccaca tcaccagcga gaataatgtc tgaattcacg
     2461 aatccgagtc ttgagccgct cattactgcg gaggcgattc aagctcgcat caaagaactc
     2521 ggcgcggaga tcgcccgcga ttacgccgga aaaaatccgc tgctgatcgg ggtgctcaag
     2581 ggcgcgttca tctttctcgg cgatctgatg cgcgcgatcg agattccgct gggaatcgag
     2641 ttcatcgcaa tttccagcta tggcgccgag atgcgcacgt ccggcgaggt gcgcatcttg
     2701 aaagacctgg acgtgcctat cgaaggccgg cacattctag tcgtcgaaga catcgtcgac
     2761 accggcctga cgctttctta cttgctggca aacctcaaat cgcgtggcgc cgcgagcgta
     2821 aagttggccg ccttgctgga caagtacgaa cgacgggaaa aagaagtgcc catcgactat
     2881 ctcggattca agattcccga caagtttgtc gtcggctatg gtttggattt cgccgaacgc
     2941 tatcgaaacc tgccgttcat cgcggtcttg aaaaatcctg aggtgtgagt ctgactcttg
     3001 cattatgctt ctgcccctct ccggtgggag aggggttggg gtgagggctt gcgatgccac
     3061 agcccccacc ctgtccctcc cccaaaggga gagggaaata gagcctctta tttcaatact
     3121 cgatcgagtt ttccggtctt cacatcccac aaaaccaccg aagcattgcc gctgccgctg
     3181 gcgagtaaac tcccgtcggg tgagaaggcg agggaagcca ccgttaggtc gtggcccttg
     3241 agcgtgcgcc gcgattttcc gttcgcagtt tcccagagaa tgaccgtgcg atcgtcgccg
     3301 ccggtggcca tcatagttcc gtcgggtgaa aacgcgattg cattcacagc ggcggaatgt
     3361 ttcttgagtt gcaagatcaa actgccggtt tgccaatccc aaagactcac gatgccgtct
     3421 tcgctcgcgc ttgccagcat tcgtccatct ggagccaaac gaagcgcggt gacgttcgcg
     3481 ttggatgtca tcgttttctc gatctgtccg gtggcaagat tccagatctg gatcgcgcga
     3541 tcttcgcttg aggtggcgag cgtccgcgcg tcagacgaga aagcaatgcg actgatgttc
     3601 ccgccgcgaa gaacgagtcc gcccaggctt tttcgatcga aagtattcat cagggcgact
     3661 cgatcatggt gagcgatcgc cactactttg ccgtcagcag agagcccgat tgctgacgtg
     3721 ttcggatcgg attcttcaaa aatcgtctcg tagccggtcg ttatgtccca caagtgaagc
     3781 ctcttcccgt catcaacctc agcaacagtg gccgcgtttt gcgaaatctc
//
LOCUS       DASZZE010000336         4760 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_321987, whole genome shotgun sequence.
ACCESSION   DASZZE010000336 DASZZE010000000
VERSION     DASZZE010000336.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4760)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4760)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4760
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_321987"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..328)
                     /locus_tag="VHD88_06475"
     CDS             complement(<1..328)
                     /locus_tag="VHD88_06475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HVS21474.1"
                     /translation="MRKNDVRNPDGVARDQNGALSQRSRCAATLGFVTQPLRGWGPLV
                     LTLILSTFTFAQNSTSITGHITDEHNAAVAGAEVQLRSRSGAHLLLIADDHGNYLFKY
                     VVPGDYV"
     regulatory      complement(482..691)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            complement(672..1454)
                     /locus_tag="VHD88_06480"
     CDS             complement(672..1454)
                     /locus_tag="VHD88_06480"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HVS21475.1"
                     /translation="MLEAKNITVNYGPREAVAGVSLHPKPGEVIAIIGPNGAGKSTLL
                     RALNGALPLSHGEVLLDGKALQSYARRSVARRIAVVAQEADFRFPVTVMEFVLGGRHA
                     WTNAWGWETEHDVAIARAVLQETELEDFAARFMNELSGGERQRAVLARALATEAKLFL
                     LDEPTANLDLAHQATMLRLVRARCDQKETSAVVVTHDVNLAAEFANRVLLMKEGHAIA
                     IGRPREVLTPDLLRSVFDLEVLVDAHPISGAPRITPVHELHR"
     gene            complement(1593..2621)
                     /locus_tag="VHD88_06485"
     CDS             complement(1593..2621)
                     /locus_tag="VHD88_06485"
                     /inference="COORDINATES: protein motif:HMM:NF013219.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HVS21476.1"
                     /translation="MSDRSKSTEPGRATLRRTLFVCGVLLFALAVVLVIASVIGSQRL
                     PLASSLCALTGRSNCGLSSEEQAILFDIRLPRILLAGAVGMCLAAAGAGYQALLRNPL
                     AEPYLLGISNGAAVGTMTALVFFGTHEWSRPVMAFAGALAATFVVYRLARGRTGATPE
                     RLILAGVIVTTFLSSAIVFITTLMDATRIRSFTFWLLGDLSGTTTSLLTVAIVAAGLG
                     VAILALNARSLNLMMLGERDAFDLGVEVGRVRMTVFVAASLLVGASVASSGSVGYVGL
                     VVPHLVRLSFGSDNRLVIPGAALAGASFVIIADTLARTIIAPRELPVGAITALIGAPL
                     FIYLLKRG"
     gene            complement(2626..3432)
                     /locus_tag="VHD88_06490"
     CDS             complement(2626..3432)
                     /locus_tag="VHD88_06490"
                     /inference="COORDINATES: protein motif:HMM:NF013648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin-binding protein"
                     /protein_id="HVS21477.1"
                     /translation="MRDEAGREVELPMRIGRIVSLAPNLTEIVYAVGAGDRLVGDTEY
                     CDYPPEAKSVAKIGDTMHPSVERIIALKPQIVLVSTASQLEAFTKQLDQQQIAVYVTN
                     PQSLDDVFRSIQTLGDLFGEHDRAASVVADLRQRADAVEAATKRTKPVKVFYQLSGEP
                     LYTIGRESYLTDLVRQAGGVSATADVPGAFPRFSDESALAARPEAIILPTGGSMGTAN
                     SSVASSLKNSPAVLSNHIFKINDDHLSRPGPRLIEGLEEMARALHPEAFK"
     regulatory      complement(3933..4083)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            4399..>4760
                     /locus_tag="VHD88_06495"
     CDS             4399..>4760
                     /locus_tag="VHD88_06495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21478.1"
                     /translation="MATKGRDNFISKIVKDPASPPKTILLRGYLGDSSEEGHTRLYTD
                     AQLNHYVEIPDDEILYEVELPKDQSPLGESLVWINQDAEVTHVPAGPQRLKSRFLEGP
                     IAAAAAHGGFGGATPALV"
BASE COUNT         1085 a         1417 c         1301 g          957 t
ORIGIN      
        1 gaacgtaatc gcccggcacg acatatttga ataaatagtt gccgtggtcg tctgcgatca
       61 gcagcaaatg cgcgcccgaa cgcgaacgca attgcacttc ggctccggcg acagcagcgt
      121 tatgttcgtc agtgatgtgg ccggttatcg atgtagagtt ctgcgcaaag gtgaacgtcg
      181 acagaatgag ggttagaacg agtggtcccc aaccgcgaag cggttgagta acgaagccca
      241 gtgttgccgc gcagcggcta cgctgggaaa gagcgccatt ttgatctctc gcaaccccat
      301 cggggttgcg aacgtcattc ttcctcaatg atcccagggc agtcgctccg cgacaaccct
      361 gggctgggtt atgcaaccgc gttgcggttg ccataatctg tagacttgct ctttgacttg
      421 aacttactag tttgcagggc tcattatttt tcatcttagc ttctcctgcc cgtcgcagta
      481 cgagctgaaa gcgagcggtg aaaggtttcc tgactcgcgg ttgtgatcca aatgaatcgc
      541 caactctccg cgccttccca cgttgccagc gcagtggcca aaagcttgcg gagaattgtc
      601 accgcttaca gttgcgcggg cagtggcggc attgcaccgc cttccctttt tcgccgctca
      661 acggttgatg tttaccggtg caactcgtgt accggcgtga ttcttggcgc accagaaatc
      721 ggatgcgcgt caaccaaaac ctccaaatca aaaacgctgc gcagcaggtc gggcgtcagc
      781 acttcgcgcg gtcggccaat cgcaatcgcg tggccttctt tcatgagcaa gacgcgattg
      841 gcgaattccg cagccaggtt tacgtcgtga gtcacaacga ccgcggaggt ttccttctgg
      901 tcacagcgcg cgcgaaccag ccgcagcatc gtcgcttgat gagccagatc gagattcgct
      961 gtcggctcgt cgagcagaaa cagtttcgct tcggtcgcca gagcgcgcgc gagcacggca
     1021 cgctgtcgct caccgccgga aagctcattc atgaatcgcg ctgcgaaatc ttcaagttca
     1081 gtttcctgca agaccgcgcg cgcaatcgcc acgtcgtgtt cggtctccca tccccacgcg
     1141 ttcgtccatg cgtgacgtcc accgaggaca aactccataa ccgtcacggg aaaacgaaag
     1201 tcggcttcct gcgcgacgac cgcaatccga cgcgccaccg agcgtcgtgc ataagattgc
     1261 aaggccttcc catccagcaa gacctcaccg tgcgaaagcg gcaacgcgcc gttgagtgcg
     1321 cgcagcaacg tggacttccc cgcgccattc gggccgatga tggcgatcac ttcaccgggt
     1381 ttgggatgta aagaaacgcc ggcgacggct tcgcgtgggc cgtagttcac ggtgatgttt
     1441 ttcgcctcta acattcgcgc ttgatgtctg acaaacttca caattccctc tccctttggg
     1501 agagggttag ggagagggcc tgatcgactc gcgccccgat gtccttccta gctccgcccc
     1561 tcaccccagc cctctcccaa aggagaggga ggctaaccgc gcttcaacaa ataaataaat
     1621 aacggcgcgc caatcagcgc cgtaattgcg ccgacgggca attcgcgcgg cgcgatgatc
     1681 gtgcgcgcca gcgtgtcggc gataatcaca aagctcgcgc cggcgagcgc tgctccggga
     1741 atcaccagac ggttgtcgct gccaaacgac agacgcacca gatgcggcac gacgagccca
     1801 acgtatccaa ccgatccgct cgacgcgacg gacgcgccca ccagcaggct cgcggccacg
     1861 aacaccgtca ttcgcacccg cccgacttcc actcccaaat cgaaagcatc gcgctctccc
     1921 agcatcatca aattcaacga acgcgcattc aacgccaaaa ttgcgacgcc aagtccggcg
     1981 gcgacgatcg ccacagtaag caaactcgtc gttgtgcccg aaagatcccc caacagccaa
     2041 aacgtgaacg agcgaatgcg tgtcgcatcc atcagcgtcg tgatgaaaac gatcgccgat
     2101 gaaagaaacg tcgtgacgat cactccggcg agtatcaaac gctcaggcgt cgcgcccgtg
     2161 cgtccgcgtg ccagacggta aacgacgaac gttgctgcca acgcgccggc aaaagccatc
     2221 accggccggc tccattcgtg cgtgccaaag aaaaccagcg ccgtcatagt tcccaccgcc
     2281 gcgccgttcg aaatgccgag cagataaggt tcagccaggg gatttcgcag cagtgcttga
     2341 tagcctgctc ccgccgccgc cagacacatg ccgactgccc ccgccagcag aatgcgcggc
     2401 aagcgaatgt caaatagaat cgcttgctct tctgaagaga gaccgcaatt cgatctgccg
     2461 gtcagagcgc atagcgatga cgcaagaggc agacgctgac ttccgatcac cgaagcaatg
     2521 accagcacga ccgcgagcgc aaaaagaaga acaccgcaga caaagagcgt gcgacgaaga
     2581 gtcgcgcggc ctggttcagt tgatttcgat cgatcgctca ttgagttact tgaaagcctc
     2641 cggatgcagc gcgcgcgcca tctcttccag accttcaatc agtcgcggtc ccggacgcga
     2701 cagatgatcg tcgttgatct tgaaaatatg attgctcaaa accgctggcg aatttttgag
     2761 tgacgaagca acacttgaat tcgccgtacc cattgagccg cccgtcggga gaataatcgc
     2821 ttcgggcctc gcagcgagcg cggattcgtc gctgaaacgc ggaaacgccc ctggcacatc
     2881 agctgtcgcc gaaacgccgc ccgcctgccg gactaaatcg gtcagatacg attcacggcc
     2941 gatggtgtaa agaggttcgc cggaaagttg ataaaagacc tttacgggtt tggttcgctt
     3001 cgtcgctgct tcgacggcgt cagcgcgttg acgcaaatcc gcaactacac tagctgcgcg
     3061 atcgtgttca ccgaacaagt cacccagagt ttggatggaa cgaaacacat cgtcgaggct
     3121 ctgtggattc gtgacgtaaa ccgcgatctg ctgttggtca agctgctttg tgaaggcttc
     3181 gagttgcgac gcagtcgaaa ccaaaacgat ctgcggcttt agagcgatga tacgctcgac
     3241 gctcggatgc atagtatcgc caatcttcgc gacgctcttc gcttcgggcg ggtaatcgca
     3301 gtactcggtg tcgccgacga gccgatcgcc agcgccgacc gcgtaaacaa tttcagtcag
     3361 attcggggcg agtgagacga tgcgaccgat acgcatcgga agctcgacct cacggcctgc
     3421 ttcgtcgcgc actttgtgag ctggagcgag gagttcggca agggaagaat tctgtgtgcg
     3481 cggtttctgg caagacgcta tgagagtcag cgcaagcgaa acagatgccg ccatcaccag
     3541 tttgcggaaa tttatcacag agtccgcgga gcggacgaac gaaaatagcc cagcactttg
     3601 agtgctggga ttggcgagcg atattttatt ccaagcccgt gaaacgggcg gcagaaagcc
     3661 gccacgtatg agccgggtcg cgaacggtct gtcgtccgct ccgcggactg agcttcgtat
     3721 taatcgctcg tacccagcga tgaatcgctg ggctattttc gtccgtccgc ttcgcggact
     3781 cctgacactg aaccgtcgat cgcgcttgct atgagttgga aaaaacaaaa tcccgtcacc
     3841 tcttctgccc gcgaaaacga caggctggcg acgggattct ttccgaagga gaattcccac
     3901 tgcggcctga acaccttttc gcgggcgttc aaaagctgca acagcgtccg ggcaggtctc
     3961 ctgactttga tcatcgcttc gtaatcagcg aatctcttca cagtggcgcg accgcgcggg
     4021 attctcaccc gcttccctat tcttcccgct ttcacgcggg acacccaaac gcatttgaaa
     4081 gaactcggaa cgtaacgttc ctgtgatggc ggcgaacgtt atcacgaggc agcaaccatg
     4141 tcaaagcatt tgccgcgtgt cgctgatatt ttgcggtaat ccatcggaag cggaatctta
     4201 gtcttggccc ttgctaaagg tgtaaggcgg ctattgacaa cccgtatcgg gaggcgtagt
     4261 ctgcgcgcgt cccaagggta cattagcctt gacacccgca acgtccgact gacgaaggaa
     4321 cttctttcac cctcgccagc ctcatgtagc ggctaaaaca tttcgatcac tgcaactcac
     4381 cttcaggagg agaccgctat ggcaacgaaa gggagagaca atttcatctc aaagattgtc
     4441 aaggatccgg ctagccctcc aaaaacgatc ttgttgagag gttatctggg tgactcttca
     4501 gaagagggtc acacgcggct gtacaccgac gcccagctca atcattatgt ggagattccg
     4561 gacgatgaga ttctctatga agtagagcta cccaaggacc agtcgccttt aggagaatcc
     4621 ttagtctgga tcaatcagga tgctgaagtc actcatgttc cagccggtcc gcagcgactg
     4681 aaatcaagat tcctcgaagg tcctattgcc gcagccgctg cgcatggagg cttcggcggt
     4741 gcgacgccgg cactggttat
//
LOCUS       DASZZE010000337         3782 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_77158, whole genome shotgun sequence.
ACCESSION   DASZZE010000337 DASZZE010000000
VERSION     DASZZE010000337.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3782)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3782)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3782
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77158"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..335
                     /locus_tag="VHD88_06500"
     CDS             <1..335
                     /locus_tag="VHD88_06500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21479.1"
                     /translation="AFPVRAEWDNSDGVHIVAEGETENVGPEGTLIHLHRELPPVGGR
                     VNLLILGEDGEKLRVIAEVLRIVRDPAHPQAALQLLGSTDEWRGLVWQEALIKMTEAE
                     DDYDEDDY"
     gene            375..1628
                     /locus_tag="VHD88_06505"
     CDS             375..1628
                     /locus_tag="VHD88_06505"
                     /inference="COORDINATES: protein motif:HMM:NF013740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HVS21480.1"
                     /translation="MSSADPAPKESAYASWLQTRAVLRILLLLLAVAGVLWVVYKLTT
                     VILLVVLAIFFSYLVAPLVDLVQRPIRIGARERMMPRALAIAIVYVVLFCGIGLAIYF
                     LAPQLAAQFPEFKQQATAYYKTISGYTDRLNQYFKQHRMPEGFVDAINNTALGLLAQG
                     GGIASAAVERMLGLIVYLPWLVLIPILSFFFLKDADSFRRSALAMLPRGRLRWRGDEF
                     FQDVNSTLAAYIRAQLTASLLVGVISSLGFALIGLPSPLVLGLIAGMLEFVPLAGPLV
                     VAILVALLALLHSGFGMAFVVLLFLGVMRIVQDYVIYPRIIGEGIHLHPLAVILAILC
                     GAELAGVAGVFLAIPVIAIITVSYRHWLEHRGSETIAEVLAEAVVETEADVERVRPTT
                     ATTAADMARARPDLLTGELKLPKID"
     gene            complement(1645..2748)
                     /gene="carA"
                     /locus_tag="VHD88_06510"
     CDS             complement(1645..2748)
                     /gene="carA"
                     /locus_tag="VHD88_06510"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: protein motif:HMM:NF009475.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005951 - carbamoyl-phosphate synthase
                     complex [Evidence IEA];
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HVS21481.1"
                     /translation="MSESKPAILALEDGRVWRGRSWAAEGESCGEMVFNTSMTGYQEV
                     LTDPSYAGQIVCMTYPLIGNYGVNSADPESARPWVEGFVVREASRMASNWRAEESLDA
                     YLKRWSIVAIDHIDTRALVRHIRDKGAMRACLSTIDTDGDSVIETARQSPSMENRELA
                     SVVTTRQPYDFPAAGEERFRVVCYDFGVKTNSLRELSRAGCRVTVVPASTPANEVFAL
                     KPDGVFLSNGPGDPASMTKEVEEVKQVAQSGVPTFGICFGHQLLGRAFGGKTFKLVFG
                     HRGGNQPVKDFSDGHVEITSHNHGFAVLADSLPPEMEVTHVNLNDACVEGMRHRTLPI
                     ISVQYHPEAAPGPHDAAHHFRRFIELMEKRAAS"
     gene            complement(2820..>3782)
                     /locus_tag="VHD88_06515"
     CDS             complement(2820..>3782)
                     /locus_tag="VHD88_06515"
                     /inference="COORDINATES: protein motif:HMM:NF012544.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HVS21482.1"
                     /translation="ALIGLIIVGLAFGWNHASAAYTSSWWNSWSNGWNPQAVQPGLKA
                     VGALALMMLVGRAMTGPLFAQSAWNNVTFTGGEVENPGRNLPRALLIGCGTVVGLYLL
                     ANLAYIVTLPLTGIQTAPQGRVATATMQAIFGPRGTILMALAIMISTFGCNNGLILAG
                     ARVYYAMARDGLFFNRVGKLNPRHVPAVALIAQGVWACLLTLPRTVTADPKTGLAVYG
                     NVYTQLLEYIVSADLIFYALMVGAVILMRRKAPELARPYRTFGYPLVPLIYILLALLV
                     VVDLAYLAPYTSGIGYLLVLTGIPAYLIWRRSAAAHSAMEATPE"
BASE COUNT          788 a         1075 c         1091 g          828 t
ORIGIN      
        1 cggcttttcc cgtccgcgcc gagtgggaca acagcgatgg tgtgcacatc gttgccgagg
       61 gcgagacgga aaacgtaggc ccggagggaa ctttgatcca cctgcatcgc gagttgccgc
      121 cggtgggcgg tcgcgtcaat ctgctgatcc tgggcgaaga tggcgaaaag ctgcgcgtga
      181 ttgctgaggt gctccgcatt gtgcgcgatc cggctcatcc gcaggcggcg ctgcagcttc
      241 tgggttcgac ggacgaatgg cgcggcttgg tgtggcagga agccctgata aagatgactg
      301 aagccgaaga tgattacgac gaggatgatt actaaacagt tcgatgcaag attagttatc
      361 aaagaaataa aagtatgtcg tccgccgatc ccgcaccaaa ggaaagtgcg tatgcgtcat
      421 ggctccagac gcgcgcggtt ttgcgcatac tcttgctgct gctcgcagtg gcgggagtgc
      481 tgtgggtggt ttacaaactc acaaccgtca ttctcctggt ggtcctcgcg atctttttct
      541 catacctcgt cgcgccgctg gttgatctgg tgcagcgacc gatccgcatc ggcgcacgtg
      601 agcgaatgat gccgcgcgcg ttagcgatcg cgatcgttta tgttgtgctc ttttgtggaa
      661 tcggactggc gatttatttt ttggcgccgc aactcgcggc gcaatttccc gagttcaagc
      721 agcaggcaac cgcgtattac aagacgatca gcggttacac cgaccggctc aatcagtatt
      781 tcaagcagca ccgcatgcct gaaggctttg ttgacgcgat taacaacacg gctcttggcc
      841 tgctcgccca gggtggcggc atcgccagcg cggctgtcga gcgaatgctc ggattgatag
      901 tttacctgcc ctggctggtg ctgattccca tcctgagttt cttcttcttg aaagatgccg
      961 acagctttcg tcgttcggcc ctggcgatgt tgccgcgcgg acgcctgcgt tggcggggcg
     1021 acgaattttt tcaagacgtc aacagcacct tggcggcata catacgcgcg caactgacgg
     1081 cctctcttct ggtcggcgtg atttccagcc tcgggttcgc gttgattggt ttgcccagcc
     1141 cgctcgtgct tggtttgatc gccggcatgt tggagtttgt gccgttggca ggtcctctgg
     1201 tggtggcgat cctcgtagcg ctgctggcgc ttttgcattc cggctttgga atggcgtttg
     1261 tggtgctgct gttccttggc gtgatgcgga tagttcagga ctatgtcatc tatccgcgca
     1321 tcatcggcga aggaattcac ctgcatccgc tcgcggtgat tctcgcgatc ctctgtggcg
     1381 ctgaactcgc cggcgtcgct ggagtctttc tggccatccc ggtgatcgcg atcatcaccg
     1441 tcagttatcg ccactggctg gagcatcgcg gcagcgaaac catcgccgag gttttggcag
     1501 aagccgttgt ggagacggaa gctgacgtcg aacgagtacg ccccaccacc gcaactaccg
     1561 ccgcagacat ggcgcgcgcg cgtccggatt tgctcaccgg tgaactaaag ctgccaaaga
     1621 ttgattaggc tgtcgtgcaa gttgttaact tgcggctctc ttttccatca attcaataaa
     1681 tctgcggaaa tgatgtgccg cgtcgtgcgg accgggcgca gcttcgggat ggtattggac
     1741 tgagatgatt ggcaacgtgc gatggcgcat gccttcgacg caagcgtcgt tgaggttgac
     1801 gtgggttact tccatttctg gcggcagact gtccgccagc accgcaaagc cgtgattgtg
     1861 tgaagtgatc tctacgtgac cgtcgctaaa atccttcacc ggctggttac cgccgcgatg
     1921 tccgaagacg agcttgaaag tcttgccgcc aaacgcgcgc cccagcagtt gatggccaaa
     1981 gcagatgcca aacgtcggca cgccagactg cgcgacctgc ttcacttctt caacttcctt
     2041 cgtcatcgat gcgggatcgc ccgggccatt tgaaagaaaa acgccgtcgg gtttcagcgc
     2101 gaacacttcg tttgccggcg tagatgcggg aacgactgtg acgcggcaac cggcgcgtga
     2161 caattcacgt aacgaattcg tcttcacgcc aaagtcgtaa cagacaacgc gaaaacgttc
     2221 ttcacccgcg gcgggaaaat cgtaaggctg tcttgtggta acgacgcttg cgagttcgcg
     2281 attttccatt gatggcgact ggcgcgctgt ctcaattacg ctgtcgccgt ctgtgtcgat
     2341 tgttgaaaga caggcacgca tcgcgccttt gtcgcgaatg tgacgcacca gtgcgcgcgt
     2401 gtcgatatga tcgatcgcga cgatgctcca gcgcttcaga tatgcatcga gcgattcttc
     2461 cgcgcgccaa ttcgaggcca tccgactcgc ttcacgcaca acaaagcctt cgacccaggg
     2521 ccgcgccgat tcaggatctg cgctgttcac gccataattc ccaatcagcg gataagtcat
     2581 gcagacgatc tgtccggcgt acgatggatc ggtcagcact tcctgataac cagtcatcga
     2641 ggtgttgaaa accatctcgc cgcagctctc gccttcagca gcccacgatc gaccacgcca
     2701 cacgcggccg tcttcgagag caaggattgc gggttttgat tcactcatct tcagagcaat
     2761 aggccttttg aaccgacttt caagcagaaa gtataaccgt tacgcgtggt cagtgttaat
     2821 tactccggcg tggcttccat cgctgaatgc gcggcagcac tccggcgcca aatcagataa
     2881 gccggaattc cggtgagcac caacaggtaa ccaatgcccg aagtgtaggg cgcaagataa
     2941 gcaagatcca cgacgaccag cagcgccagc agaatataaa tcaaagggac gaggggatag
     3001 ccaaacgtgc gatatggtcg cgccagctcc ggagccttgc gtcgcatcaa gatcactgct
     3061 ccaaccatca gcgcatagaa aatcagatca gccgaaacga tgtattcaag taattgcgta
     3121 tagacattgc cgtatacggc aaggcccgtc tttggatcgg cggtgactgt gcgcggcagc
     3181 gtcagcagac aagcccaaac gccttgagca atcaacgcaa ctgcgggaac gtggcgcgga
     3241 ttaagctttc cgacgcgatt gaagaacagg ccgtcgcgcg ccattgcata atagacacgc
     3301 gcgcccgcga gtatcagccc gttgttgcag ccgaacgtcg agatcatgat cgccagcgcc
     3361 atcaagattg tgccgcgcgg gccaaatatc gcctgcatcg tggccgtggc cacgcgtccc
     3421 tgcggggcgg tttggattcc cgtgagcggc aacgtgacta tgtaagctaa attcgcgagc
     3481 agatagagac ccactaccgt cccgcaaccg atcagaagag cgcgcggcag attgcgtccc
     3541 ggattctcaa cttcgccgcc ggtgaatgtc acgttgttcc aggctgattg cgcgaagagc
     3601 ggtccggtca tcgcgcgtcc aaccaacatc atcagcgcaa gcgcgcccac ggccttaagt
     3661 ccaggctgga ctgcttgcgg attccagccg ttggaccatg aattccacca cgaagaagtg
     3721 taggcggcgc tcgcatgatt ccaaccgaac gccaggccga caataatcaa gccgattagc
     3781 gc
//
LOCUS       DASZZE010000338         3043 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_125937, whole genome shotgun sequence.
ACCESSION   DASZZE010000338 DASZZE010000000
VERSION     DASZZE010000338.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3043
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125937"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..388)
                     /locus_tag="VHD88_06520"
     CDS             complement(<1..388)
                     /locus_tag="VHD88_06520"
                     /inference="COORDINATES: protein motif:HMM:NF014657.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF177 domain-containing protein"
                     /protein_id="HVS21483.1"
                     /translation="MRIELEKLAELGGKFSKVYEVGSLSLDDKYVRLTEPAQVRGRIK
                     RSESEVELRGVLHAKVQTLCSRCLKPVELPIDSEFTERFATAVSWRAEEQHELREEDL
                     NLAVFDGEVIELDDLTREEILLAVPDH"
     gene            complement(480..839)
                     /locus_tag="VHD88_06525"
     CDS             complement(480..839)
                     /locus_tag="VHD88_06525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21484.1"
                     /translation="MIVVQPPSARADVAETTPHEEHLLERLTMLENTLARLAERLEQG
                     LKLLLRQSETAYTNHALVKSLIAILNDCGVVDNGRLESMWRAECDKLDEKPIEHSEPV
                     RPLKKMRKAARKASKSD"
     gene            complement(935..1780)
                     /locus_tag="VHD88_06530"
     CDS             complement(935..1780)
                     /locus_tag="VHD88_06530"
                     /EC_number="1.1.1.157"
                     /inference="COORDINATES: protein motif:HMM:NF004474.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxybutyryl-CoA dehydrogenase"
                     /protein_id="HVS21485.1"
                     /translation="MSDTFGVIGSGTMGAGIAQVASRAGCNVVMRDVEQEFLARGMTA
                     IDKSLQRDVDKDRLSTDEKRAIITRIRTTTDIGALSDAFIVVEAATEELQIKSEIFKS
                     LDEVTKADAILASNTSSISITKLGTVTRRPDKVIGMHFMNPVPVMKLVEVIRGAATSD
                     ETFETTSALAGKLGKIPLECQDSPGFISNRVLMPMINEAIFALYEGVATRESIDGIMK
                     LGMNHPMGPLALADFIGLDVCLAIMNVLHDGFGDSKYRPCPLLKRYVDAGWLGKKTGR
                     GFYEY"
     gene            complement(1854..2240)
                     /locus_tag="VHD88_06535"
     CDS             complement(1854..2240)
                     /locus_tag="VHD88_06535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21486.1"
                     /translation="MTAEEHNKTLATLHFIYGGMHGLTLLGLLLLVFVVKTASPAANL
                     ISTFWITVSVVVFVILLFAVGLLPLLVGYALMTRRRWAKPLGMFLAVISLINIPIGTA
                     LGIYTFKFFKKLGRHQALWRQKLDGQ"
     gene            complement(2256..>3043)
                     /locus_tag="VHD88_06540"
     CDS             complement(2256..>3043)
                     /locus_tag="VHD88_06540"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR01930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HVS21487.1"
                     /translation="YRLGNGLMIDSVIQDGLWCAFDDQHMGCTGEVVSERFHVSRAEQ
                     DEYALNSHRRASAAIKSRKFKEEILPVETPQKKGPPIVFDTDEPVRADTSIESLAKLK
                     PAFKEGGTVTAGNAPGVNDGASAVVVTSADRAKSLGIEPLARIVGQATSGVEPKLVMM
                     APVEAIRKLLKKTGWSLNEVDLIELNEAFAVQAVAIIRELDLDPERINVNGGAVALGH
                     AIGQSGSRILTTMLYEMKRRNAHRGIAALCLGGGNAVAMAVES"
BASE COUNT          657 a          982 c          730 g          674 t
ORIGIN      
        1 cgtgatcggg aaccgctaac agaatttcct cccgcgtaag atcgtccagt tcaatcacct
       61 cgccgtcaaa gaccgccaga ttcaaatctt cttcccgcag ttcgtgctgc tcttcggcgc
      121 gccagctaac agccgtggca aacctttcgg tgaactccga atcaatcggc aactcaaccg
      181 gcttcaaaca acggctgcac aaggtctgga ctttcgcgtg caatactccg cgcaactcga
      241 cttcgctttc gctgcgcttg atccgacctc gaacctgcgc aggctccgtc aatcggacgt
      301 acttgtcatc cagcgacagg ctgccgactt cgtaaacctt tgagaacttg ccgccgagtt
      361 ccgccagctt ttcaagctcg atccgcatag ctgagcccca cagaaagcgt cccggggcgg
      421 agcgcaaagt cgccaattat agccgcgcgt tcggcgctgt caaaggccgg ctcagcgtgt
      481 cagtcgcttt tgctcgcttt ccgcgcagcc tttcgcattt tcttcagcgg ccgaacgggc
      541 tcggaatgct cgattggttt ttcgtcgagc ttgtcacact cggccctcca catcgattcc
      601 aaacggccat tatccacgac tccgcaatca ttcagaatcg cgatcagact cttgaccagc
      661 gcgtgattcg tataagccgt ttccgactgt cgcagcagca gcttgagtcc ctgctcgagt
      721 cgttcagcca aacgcgccag cgtgttctcg agcatcgtca gccgttccag taagtgctct
      781 tcgtgcggcg ttgtctccgc gacgtccgca cgagccgaag gcggctgcac tacgatcatc
      841 aatctggttc cgcatcgcag acaaaactcc cgccccagcg gattcgccgc gcggcatttc
      901 tgacagtaat gagagatcgt gtgttgctgc attcttagta ctcgtagaaa cctcggcccg
      961 ttttctttcc caaccagccg gcatcaacgt agcgcttcag caaaggacat ggacgatact
     1021 tcgaatcgcc gaatccatca tgtagcacgt tcatgatcgc gaggcaaacg tccagaccga
     1081 tgaaatccgc aagcgctagc ggccccatcg gatgattcat gccgagtttc attatgccgt
     1141 caatgctctc gcgcgtcgcg acaccttcgt acagcgcgaa gattgcttca ttaatcattg
     1201 gcatgagcac gcgattcgaa atgaagccgg gtgaatcctg acactccaaa ggaatcttgc
     1261 caagttttcc cgccagcgcg ctagtcgttt cgaaagtttc atcagaagtt gccgcgccgc
     1321 gaatcacctc gaccaacttc atcactggca ccggattcat gaagtgcatc ccgataacct
     1381 tgtcgggtcg gcgtgtgacc gtaccaagct tcgtgatcga aatcgaagaa gtgttcgacg
     1441 ccaaaatcgc gtccgccttt gtgacctcat caagcgattt gaaaatctcg cttttgattt
     1501 gcaactcctc cgtggccgct tcgacgacga tgaacgcgtc gctgagcgcg ccgatgtccg
     1561 tcgtcgtgcg aatccgcgtt atgatcgcgc gcttctcgtc ggtgctcaat cggtctttat
     1621 caacgtcgcg ttgcaagctc ttgtcgatcg ccgtcatgcc acgcgccaga aactcctgct
     1681 ccacatcgcg catcacgacg ttgcaaccgg cgcgcgaggc cacctgcgcg atgcctgcac
     1741 ccatcgtgcc cgatccgatt acgccgaaag tatcgctcat gctcttttat ctgcttcgct
     1801 tcgcccaatt catcagtggc tgggcacccc gcagcgcatc ctgcaactcc gtctcactgg
     1861 ccgtcgagct tctgccgcca taaagcttga tgccgcccga gctttttgaa aaacttgaac
     1921 gtataaatac ccagcgcagt gccgatagga atattgatca gtgaaatgac cgccaaaaac
     1981 atacccaacg gtttcgccca tcgccttcgc gtcatcaacg cgtaaccaac taacagcggc
     2041 aagagcccta ccgcaaagag aagaatcaca aaaactacaa cgctgaccgt aatccaaaat
     2101 gtcgagatca gatttgctgc cggtgacgca gtcttaacca cgaagaccag aagcagcagg
     2161 cctaacagcg tcagtccatg catcccgccg taaataaaat gcagcgtggc cagggtcttg
     2221 ttgtgctctt cggcggtcat cacttcgcga actaactagc tttccacagc catcgccacc
     2281 gcgttcccgc cacccagaca aagcgccgcg attccacgat gcgcgttgcg ccgtttcatc
     2341 tcgtaaagca tcgtcgtcag aatccgcgaa cccgattgcc caatcgcgtg gcccagcgcg
     2401 accgcgccgc cattcacatt aatcctttca ggatcaagat cgagttcgcg gatgatcgct
     2461 acagcctgaa ccgcgaatgc ttcattcagt tcgatcagat cgacttcgtt aagcgaccat
     2521 cctgtcttct tcagaagttt tcgaatcgcc tcgaccggcg ccatcatcac cagcttcggc
     2581 tcgacgccgg atgtcgcctg tccaacaatg cgcgccaacg gctcaatgcc cagcgacttc
     2641 gcgcgatccg ccgaggtcac aaccaccgcg gaagctccat cgttcacgcc cggagcattt
     2701 cctgcggtga cggtgccacc ttctttgaac gctggcttta acttcgccag cgactcgatc
     2761 gaagtgtctg cgcgcaccgg ctcgtcggta tcaaagacaa tcggcggccc cttcttctgc
     2821 ggagtctcaa cgggaagaat ctcttccttg aactttcggg acttgatcgc ggcgctcgct
     2881 ctgcgatgag agttgagcgc gtattcatcc tgctctgctc gcgagacatg aaaccgctcc
     2941 gagactactt cgccggtgca gcccatgtgc tgatcgtcga acgcgcacca cagaccgtcc
     3001 tggatcaccg aatcgatcat cagcccattg cccagccgat aac
//
LOCUS       DASZZE010000339         5251 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_192862, whole genome shotgun sequence.
ACCESSION   DASZZE010000339 DASZZE010000000
VERSION     DASZZE010000339.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5251)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5251)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5251
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192862"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            210..4973
                     /locus_tag="VHD88_06545"
     CDS             210..4973
                     /locus_tag="VHD88_06545"
                     /inference="COORDINATES: protein motif:HMM:NF016260.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translocation/assembly module TamB
                     domain-containing protein"
                     /protein_id="HVS21488.1"
                     /translation="MISGIVIAVGAIALVLIGLLAYKLGFVDRYVAGQIKDTLAQYGI
                     RADIRNFHTSLSPLTVELVGFELYDAKTGEQLGKVGRMVATVRIEDLYALNLQRNINL
                     KDLQIEGLELWVNFDAQGQSNFRNIHVPPPEPNQRILFAYSTAHVEIKNSHIHYGDLP
                     HSLSGEALNLRATIQPDDPNAPAAGWMNTVAFSSTNSTFVYDGRPVNNIDIEGRGRVN
                     QTRAEISDLTLRSPIAEAHLQGAMDDWRALRYHFNVTSTVDLTQASDVLQTGTALRGA
                     GNFAGTISGEGDRFQVEGGIKSDALAADGVRLQGLSVSGKGSGQGKSYDINARAVADL
                     LTAGDFQLNTVQLSGGVMGTGSDFRWIGELRAAAEKSYGTTITGLILRDARAEYRDGT
                     LTASAPQLTGSSLTSSGAKVQQGIQATNLHVKVENGVTTATVATAKAGKIAAANTTVN
                     GVTAKTIDMNSRGGVTNVNVKEVQVGEASAFGAQTGSINIAGVRLAIHNGRIEGTTND
                     INAGAITLKDGHVENVKLARPAFTVEPSGRYRASADLSLGGGVLGEMKLGPARASVVA
                     TSDQIQLNNFTAEALDGRAAGNATIALTKNGASRVSANFDNFDLPGAITVLSGRVVPL
                     ASKATGKADIAFNGTDLSTATGSIHAQFKGDAAAGSDLAQLSGELAVTADHGLFQIQK
                     ASLHTAATTLKATGQFSLDRDSNLQVNLASSDAAELQRDLISSGAIPEIEEQFRTYGI
                     DLGGKLVFNGSLTGALKDPIVSGHAELGSLIVNSRDLGALTANIASTAAELRVNDGRL
                     VQAGGGGAQFTLVAPRTGENNISIDATLDRMNAGNLITALPLKKDTRDQIGDTQAEVS
                     GTLKIIGMPSAMSGVADLHSGTGRLAGEPLQSFTAHATFSGSTINLDKLDANFNAGHI
                     VANGKFDTTTKAFEVTASGDRVQLDRLEAFANRPSLPKLIGTATIKSLTAKGTFTDVS
                     TYEINFDAESSDVTLDGQSAGAVKLIGETANKKLNITFTTTGLLGQQAQVMKANVDLS
                     NEKLPAVVESEITDADLSQVLKILLPQADVTGHASATLKLSGNLMTENDQGEETLSLK
                     GLKGTANVSKLSFTFAEIEFSAAGPLVVDIASNEVNFHETKFTGTDTNVTVGGLVATA
                     AGGHNTLAINGQVNLRILSLFSKDVFSSGFAVLAINVGGTYEKTRLTGRASVNGGSVS
                     VLLGDQRITLANLDGAIVFNATQAQIERLNATLGGGRISATGGAQLTGFSFSQFLLDV
                     HGENVMLNYPQYFRSTVDADLKLRGDQNIQFISGDVHVRRTEYTKEIDLADLINQRPQ
                     TSIEEGGEFKFAQTAQFDKLRVEGRNALVMRNNLGDLVASVNLQLNGQVKEPIIEGRI
                     TATRGTLNFRNNPFEITRGRVDFPPRFGADPILNIEGQSVIRGYRVTAAITGPLSHPE
                     TTVGSEPALPQADVVSLILTGTLSSTDTSTSVLAQSGLGTAASLLTDALINAPVSRAT
                     NKLFGLNRLEINPVIGGAGTAPTARLTVARRISKDLVVTYSTNIASDPNQVLAVEYRV
                     SNRLSFVAEYEQGSTRNLSTRNNNYSFEIRLRKRF"
     gene            5052..>5251
                     /locus_tag="VHD88_06550"
     CDS             5052..>5251
                     /locus_tag="VHD88_06550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21489.1"
                     /translation="MILAVTFVLCATTLPLFAQVGDYEGRKVATVEVVIEGSPPDASA
                     QAEFQSMLKLTSNSEYSAVLVR"
BASE COUNT         1208 a         1516 c         1496 g         1031 t
ORIGIN      
        1 ctgcttttcg gggctctccc tcaaaaactt ggaagatatg agagccggtc tgaagtctga
       61 aatttcagat ctcagacacg cggcttgcgc caatacctgt ggataaccat aacgataatc
      121 cagccgaacc aacgagcggc acacggcagc caactcccag ctcaggctcg ccgcgcagag
      181 gcatcagacg tttcacgcgt cgccacgcag tgatttccgg aatcgtgatc gcggtgggag
      241 cgatcgccct cgtcctcatc ggactactgg cttacaagct cggcttcgtc gatcgttacg
      301 tcgccggaca aatcaaggac acgctggccc agtatggcat tcgcgcggac attcggaatt
      361 ttcatacgtc gctgtcgcca ctgacagtcg agttggttgg atttgaactc tacgatgcca
      421 agactggcga gcaactcggg aaggttggcc gcatggtggc cactgtgcga atcgaagatc
      481 tctacgcgct gaacctacaa cgcaatatca acctgaaaga tctacagata gaaggcctgg
      541 aactctgggt gaacttcgac gcgcagggcc aatccaactt tcgcaacatt cacgttccac
      601 caccggagcc gaatcagcgc atcctgttcg catattctac cgctcacgta gaaatcaaaa
      661 actcgcatat ccattacggg gatttgccgc atagtctgtc aggcgaagca ctcaacctgc
      721 gcgcgacgat tcaacccgac gaccccaacg ctccggccgc gggttggatg aatactgttg
      781 cgtttagctc gaccaactcc acttttgttt acgatggccg gccggtcaat aacatcgaca
      841 tcgagggacg cgggcgcgtc aaccaaacgc gcgcggagat ttctgacctg accctgcgtt
      901 cgccaatcgc cgaagcgcac ctgcagggcg caatggatga ctggcgcgcg ctgcgatatc
      961 acttcaatgt aacttcgacg gtggatctca cgcaggcttc ggacgttttg caaacgggaa
     1021 cggcattgcg cggcgccggc aactttgcgg gcacgatcag cggcgagggc gatcgttttc
     1081 aagtcgaagg cggaatcaaa tccgacgcgc tcgccgccga tggcgtgcgt ttgcaaggtt
     1141 tgagcgtgag cggaaaagga tcgggccagg gcaagagtta cgacatcaac gcgcgcgccg
     1201 tggctgatct gctaactgcc ggagactttc aactcaacac cgtgcaactc tctggcggtg
     1261 tgatgggaac gggatcggac tttcgctgga tcggcgaatt gcgcgccgcg gctgagaaga
     1321 gttacggcac gacgatcact ggtttgattt tgcgcgacgc gcgcgccgag taccgcgatg
     1381 gaactctcac cgcgtccgcg ccgcaactga ccggcagcag tcttacttca tcgggagcaa
     1441 aagttcagca aggaattcag gccaccaacc tgcatgtgaa agttgaaaac ggagtgacga
     1501 ctgcaaccgt cgccaccgcg aaggccggaa aaatcgcagc agcgaacaca acggtcaacg
     1561 gcgtcacggc caagacgatc gacatgaaca gccgcggcgg cgtaacgaac gtcaacgtga
     1621 aagaggttca ggttggcgag gcgagcgcat tcggcgcgca aaccggcagc atcaacatcg
     1681 ccggagtgcg tttggcgatt cacaatggcc gcattgaagg cacaacgaac gacatcaatg
     1741 cgggcgcgat cacgctgaaa gacggtcacg tggaaaatgt gaagctcgct cgaccggctt
     1801 tcacggtcga accatcgggc cgctatcgcg cgagtgctga tttgagttta ggcggcggcg
     1861 tgctcggaga aatgaaactt ggcccggcgc gcgcttcagt cgtcgcgacc agcgatcaaa
     1921 ttcaactgaa caacttcacc gcggaagctc tcgacggccg cgccgcgggc aacgcgacga
     1981 ttgcattgac gaagaacggc gcttcacgag tcagcgccaa cttcgacaac ttcgatctgc
     2041 ctggggcaat cactgtgcta tcgggccgcg tggttccact cgccagcaaa gccaccggca
     2101 aagccgacat cgcattcaac gggaccgacc tcagcaccgc gactggcagc atccacgcgc
     2161 aattcaaagg tgatgctgcg gcgggcagcg atctcgctca gttgtcaggt gagttggcgg
     2221 tcacagccga tcacggcctg ttccagattc aaaaggcgag cctgcacaca gcggcgacca
     2281 cattgaaggc gacgggtcag ttctcactcg accgtgattc aaatttgcaa gtcaatctcg
     2341 cttcgtcgga cgcagcagaa cttcagcgag acttgatttc gtccggggcg attccggaga
     2401 tcgaagagca attcaggacc tacggaattg atctcggcgg caaactggtt ttcaacggaa
     2461 gtctgacggg cgcgctaaaa gatccgatcg tcagcggcca cgctgaactc ggctctttga
     2521 tcgtaaacag ccgcgacctc ggcgcgctga ctgcgaacat cgcttcaacc gcggctgaac
     2581 tgcgagtgaa cgatggacga ctggttcagg cgggcggcgg cggcgcgcag ttcacgctgg
     2641 ttgcaccgcg cactggcgag aacaacatct cgattgacgc gacgctcgat cgcatgaacg
     2701 ccggcaatct gatcacggcg ctgcctttga agaaagatac gcgcgaccag atcggcgaca
     2761 cgcaagcaga ggtctcgggg acgttgaaga tcatcggcat gcccagcgcg atgagcggcg
     2821 tcgccgatct gcactcaggc acgggacgcc tcgccggcga gcctttgcaa agctttactg
     2881 cgcacgcgac attcagcggc tcgacgatca atctcgacaa gctcgatgcg aacttcaatg
     2941 ccggacacat cgtcgcgaac ggcaagttcg acacaaccac gaaagctttc gaagttacgg
     3001 ccagcggcga tcgcgtccag ctcgatcgtc tcgaagcgtt tgcgaatcgt cccagcttgc
     3061 cgaagctgat cggcaccgcg accatcaaga gcctgaccgc taaaggcact ttcactgatg
     3121 tttcgactta cgaaattaac ttcgacgcgg aaagcagtga cgtgacgctg gacggccagt
     3181 cggcgggcgc ggtgaaacta atcggtgaaa ctgcgaacaa gaaactgaac atcactttca
     3241 ccacgacggg tttgttgggt cagcaagcgc aagttatgaa ggcgaatgtc gatctttcaa
     3301 atgaaaaact tcccgcagtt gttgaatcag aaatcacgga cgctgacctg tctcaggttt
     3361 tgaaaatcct gctgccgcaa gccgatgtta ccggccacgc ctcagctacg ctcaaactaa
     3421 gtggcaacct aatgaccgag aacgatcagg gcgaggaaac actttcactc aagggtttga
     3481 aaggcacggc gaacgtaagt aagttgtcgt ttacgttcgc agagattgag ttctcagccg
     3541 ccggtccttt ggtcgttgat atcgcgtcca acgaagtgaa ctttcatgag accaaattta
     3601 ccggcacgga cactaacgta acggtcggcg gactggtcgc aaccgccgcg ggtgggcaca
     3661 acactctggc gattaacggt caggttaatc tccgcattct cagcctcttc tcaaaggatg
     3721 ttttctcgtc aggcttcgcg gtgctggcga taaacgtcgg cggcacctac gaaaagactc
     3781 gcctgacggg cagggcttcg gttaacggcg gctcggtttc ggttctgctg ggcgaccagc
     3841 gcatcacttt ggcaaatctt gatggagcaa ttgtcttcaa cgccacgcag gcgcaaatcg
     3901 agagactgaa tgctacgctc ggtggcggaa gaataagcgc gaccggcggc gctcaactca
     3961 ccggcttttc attttcgcag tttctcctgg acgttcacgg cgagaacgtg atgctcaact
     4021 atccccagta ctttcgttcg acggttgacg ccgatctgaa actccgcggc gatcagaaca
     4081 tccagttcat tagcggcgac gttcatgtgc ggcgcacgga atacacgaag gagatcgatc
     4141 tggctgatct gatcaatcag cgtccgcaga cttcgattga agaaggcggc gagttcaaat
     4201 tcgctcaaac tgcgcagttc gacaagctgc gcgtcgaggg ccgcaatgct ttggtgatgc
     4261 gcaacaatct cggagacctc gtcgcatcgg tgaatttgca gcttaacggc caggtcaaag
     4321 agccgattat tgagggccgc atcaccgcca ctcgcggcac gttgaatttt cgcaacaacc
     4381 cgttcgagat cacgcgcggc cgggtggatt ttcccccgcg cttcggcgcc gatccaatcc
     4441 tcaacatcga ggggcaatcg gtgattcgcg gctatcgcgt gaccgcggca atcacgggac
     4501 cgctttcgca tcctgagacg accgttggct ctgagccggc attgccgcaa gccgatgtcg
     4561 tttcgttgat tctcaccggc acgctatcgt caaccgatac aagcacgtca gtgctagctc
     4621 aatcagggtt gggcacggcg gccagcttgc tgaccgacgc cttgatcaat gcgccggttt
     4681 cgcgcgcgac gaacaaattg tttgggctca accggctgga aatcaatccg gttattggcg
     4741 gcgcgggcac tgcgccgacc gcgcgcctga cggtcgcgcg gcgaattagt aaggacttgg
     4801 ttgttacata ttcgacgaac attgcttcgg acccgaacca ggtgctcgcg gttgagtacc
     4861 gggtatcaaa ccgtctgtct ttcgtcgccg aatacgaaca gggctcaacc agaaacctga
     4921 gcacacgaaa caacaactat agttttgaga tcagactccg aaaacggttt tagcgacgat
     4981 tgcggctctg ccgctttgca gtgcggaaca gccgccaatt atttacgaac gtgaactcct
     5041 tgctttgtcg catgatcttg gcggtgacct tcgtgctctg cgcgacaacg ctcccgctct
     5101 tcgcgcaagt cggcgactac gaaggccgca aagtcgcgac ggtggaagtc gtcatcgaag
     5161 gctcgccgcc tgacgcgtcc gcccaggctg agtttcaatc aatgctgaag ctcacgtcga
     5221 acagcgaata ctcggcggtg ctcgtgcgcc a
//
LOCUS       DASZZE010000340         4458 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_322215, whole genome shotgun sequence.
ACCESSION   DASZZE010000340 DASZZE010000000
VERSION     DASZZE010000340.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4458)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4458)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4458
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_322215"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..868
                     /locus_tag="VHD88_06555"
     CDS             <1..868
                     /locus_tag="VHD88_06555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21490.1"
                     /translation="ESEILSTLDEKGTLENLPFMPEMLRFCGRQFRVSRQAFKTCVDD
                     ADMRQLENAVFLEDVRCDGASHGGCARACLVFWKTAWLKPIGSPDQNNGLPKAKLTAE
                     DLISMATREGEFFCQSSEIINASKPLPWWEPRQYLWDLKYNRIPTLQFARSLFIAFYN
                     KLASRLKLASWGLVAGSGDQSPTTEPLNLRAGELVRVRSLSEIKATLDSEGKHQNLLF
                     APAMAHFCGSTLQVRDRVETIVLEATPRQRKIKDTVLLEGATCDGVCHRMCPRQSLLF
                     WRECWLERVKAA"
     gene            891..1613
                     /locus_tag="VHD88_06560"
     CDS             891..1613
                     /locus_tag="VHD88_06560"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HVS21491.1"
                     /translation="MQSVLVYHSISLPAEPMLGEIDISPERFAQQLRWLSSWRHVVPL
                     NETLSGKKESRRVALTFDDGYRDNLTVALPLLEKFDLPMTLFVTAGFVDQEGYLSEEE
                     LRELSKHPLITIGAHGLWHRHFNRLSKDDARLELVESRRLLEDVTGKKVDLMAWPFGE
                     CNAELERLSAECGYRAAWSVWKGSNSLHSRWRVPLGRRDNLVRFVAKASGVHALTKAR
                     WHRFTENRKSGIGRRVRSSWLN"
     gene            1619..2815
                     /locus_tag="VHD88_06565"
     CDS             1619..2815
                     /locus_tag="VHD88_06565"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HVS21492.1"
                     /translation="MGASQQNTSGERMRVLRISHASLTPSLRERERALARGYADVDLE
                     VLTTERWREAEVNVEATDDDLFPVTKARTRFSKHIQLFAYDPRPIISALRRHRPHLID
                     LNHEPYSVACAEVLTLCNWFAPSASVVLQIAQNIFRRYPPPFEWLQQRALRRVNAAYA
                     CNQTARELLRARGFDKPLTIIPFGVNTEAFHPRRGIARIAKAPLTIGFVGRMLPGKGL
                     NILADALSKLASESWRLMIVGDGPEREGFGRALAASGLLDRAEFAGAVGYESVSDFYR
                     HMDILVVPTQTTKRIREQFGRVIVEAMSSGVPVIGSTCGAIPEVIDRAGLVVPEGDAD
                     ALASALRRLLLDGDLRNELARAGRERVERHYSWERVADKTYDLFRQVLQHAPARSLNP
                     KLEFVA"
     gene            2817..3932
                     /locus_tag="VHD88_06570"
     CDS             2817..3932
                     /locus_tag="VHD88_06570"
                     /inference="COORDINATES: protein motif:HMM:NF024871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016755 - aminoacyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0044038 - cell wall macromolecule
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan bridge formation glycyltransferase
                     FemA/FemB family protein"
                     /protein_id="HVS21493.1"
                     /translation="MREVKNMIRWELLTDDEARRIWDQTLALLNDCATFQTYAWGEYR
                     RGLGWEPCRWVALNNEGEVVAMMQGCLRRYPFGLGLVWSEGGPVGDLSVCDENLQAAI
                     LRTTGLRRIYCRFRCDRERDIQDALRLSAQGWSTPWSLLSSNYSMTLDLSQEEDRLLA
                     ACEQNWRRNLRRSKDCNLSIRQWLDPNVDEVLSVYVAMQNFKGLEEQHSRDEIEQLLK
                     NVKQQIVLYRCDDEQGEVVSILGCLVVGDRACALFWATTEQGRKLHASYAIFWALVQH
                     CQRIGVKLYDLAGIDPVRNPGVYRFKRATGAAPFEYLGEWDWASRSWLRWFGNWAIAR
                     RKRINHAALALKKSYISSRAPAPLIVASQGTTRVPSS"
     gene            3929..>4458
                     /locus_tag="VHD88_06575"
     CDS             3929..>4458
                     /locus_tag="VHD88_06575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21494.1"
                     /translation="MNSNEGFDLEVIARSTRLILIADATILLSNVVSSLIGARALGPA
                     GRGDLLIVVLWPPVVAMLAGFGLPTAYRYWMAKEPERVSRLFSNAVIYTFVVGVISIG
                     IADLTVPHLVGQRSAEVMLLLRIYQVNIPAALFLDLMRGLLEGTRRFGWAGAARLIFF
                     GVQAVGFVVLWSIGRFT"
BASE COUNT          913 a         1141 c         1380 g         1024 t
ORIGIN      
        1 cgagtcggaa attctctcaa cgctggatga aaagggcaca cttgagaatt tgccattcat
       61 gccggagatg ctcaggttct gcggccgaca atttcgcgtc tcgcgccagg ccttcaaaac
      121 ctgcgtggat gatgccgaca tgcggcagtt agaaaacgcg gtgtttctgg aagacgtgcg
      181 ctgcgatggc gcgagtcacg gaggttgcgc gagagcttgt cttgttttct ggaagaccgc
      241 ctggctgaaa ccgataggct cgcctgatca gaacaacggt cttccaaaag ccaaattgac
      301 ggcggaggat ctgatctcga tggcaacgcg cgaaggagag ttcttctgtc aatcaagcga
      361 gatcatcaac gcgtcgaagc ctctgccgtg gtgggagccg aggcaatacc tttgggatct
      421 taaatacaat cgaatcccga cgcttcagtt tgctcgcagt ctttttattg ctttctacaa
      481 caagctggcc tcgcgtttga agcttgcttc gtgggggctc gtagccggct cgggcgatca
      541 atctccgaca accgagcctt tgaatcttcg cgccggcgaa ttggtccgcg tgaggtcact
      601 atcggaaatc aaagcgacgc tcgattcgga aggcaaacat caaaaccttt tgttcgcgcc
      661 ggcgatggcg catttctgcg gtagcactct gcaagttcgc gatcgcgtcg agaccatcgt
      721 gctcgaagca acgccgcgac aacggaagat taaggacacg gtgcttttgg aaggagcgac
      781 ctgcgacggc gtttgtcacc gcatgtgtcc gcgtcagtct ctgcttttct ggcgagagtg
      841 ttggctggag agagttaagg ccgcttagac aaaatcgcag cgttcaaaaa atgcaatcag
      901 tactcgtata ccactcgatc agtttgccgg cagagccaat gctcggcgag attgatattt
      961 cgccggaaag atttgcgcaa cagttgcgct ggctctcaag ttggcgtcac gttgtgccgc
     1021 ttaacgaaac tctgtctgga aaaaaagagt caaggcgggt cgcgttgacg tttgacgacg
     1081 gatatcgcga caacctgacg gtcgcgctgc cattgctcga aaagtttgac ttgccgatga
     1141 cgctttttgt gacggcaggg ttcgtggatc aggaaggtta tctgtcggaa gaagagttgc
     1201 gcgaactttc aaagcatccg ctgatcacga tcggagcaca tggtctttgg catcgccatt
     1261 tcaaccggct gtcaaaggat gatgcgcggc tcgagttggt tgagtcgcgt cgcttgcttg
     1321 aggacgtgac cggcaagaag gtcgatctca tggcgtggcc gtttggtgaa tgcaatgccg
     1381 agcttgaacg cctgagcgcc gaatgcggat atcgcgccgc gtggtcggtg tggaagggat
     1441 cgaacagcct gcactctcgt tggcgcgtgc cgctgggtcg cagagacaac ctcgttcgat
     1501 tcgttgctaa agcttcgggc gtccatgcgc tgaccaaagc aagatggcac cgattcacgg
     1561 aaaatcgtaa gagcggcatc ggccggagag tccgttctag ttggttgaat tgaaaatgat
     1621 gggtgccagt caacaaaaca cctcgggcga gcggatgcga gtgctgcgca tttcccacgc
     1681 aagcttgact ccttcgttgc gagagcgcga gcgggcgttg gcgcgcggct acgctgacgt
     1741 tgacctggaa gtgttgacga ctgagcgatg gcgtgaagct gaggtgaacg tcgaggccac
     1801 cgacgacgat ttgtttccag tgaccaaagc gcggacgcgt ttttcaaagc acatccaatt
     1861 gtttgcgtac gatccgcggc cgatcatcag cgcgctgcgc cggcatcgtc cgcatctgat
     1921 cgatctaaac cacgagcctt acagcgtagc ctgcgcagag gttttgaccc tatgcaactg
     1981 gttcgcgcca agcgcgtcag tcgttttgca aatagcacaa aatatctttc gccgttatcc
     2041 gcctccgttt gaatggcttc agcaacgcgc tctgcgaaga gttaacgccg cttacgcatg
     2101 caatcaaacg gcgcgcgaac tgcttcgcgc cagaggcttt gacaaaccgc taaccatcat
     2161 cccgttcggc gtcaacacgg aagcattcca tccccgtcgt ggcattgctc gcatcgcaaa
     2221 ggcgccgctg acgatcggat ttgtcgggcg catgctgccg ggaaagggtc tcaacatcct
     2281 ggctgatgcc ttgtcaaagc tggcgtcgga gagctggcga cttatgattg ttggcgatgg
     2341 acctgagcgc gaaggtttcg ggcgcgcact ggccgcgagt ggtctgctcg atcgcgcgga
     2401 attcgccggc gcggtgggtt acgagagcgt gtcggatttc tatcggcaca tggacatttt
     2461 ggttgtgccg acacagacga ccaagcgcat tcgcgaacag tttggcagag tgattgttga
     2521 agcgatgtcg agcggcgtgc cggtgattgg ttcaacctgc ggcgccattc ccgaagtcat
     2581 cgaccgcgcc ggattggttg tgcctgaagg cgacgccgat gctctcgctt ccgccttgcg
     2641 ccgattgctg ttggatggcg atctgcggaa cgaactggcg cgcgccggaa gagagagagt
     2701 tgagcgccat tattcctggg agcgagtggc ggacaaaact tacgatttgt ttcggcaggt
     2761 tttgcagcac gcgccggcgc gaagtctgaa tcccaaacta gagttcgttg cgtgatatga
     2821 gggaagttaa gaacatgatc cgatgggaat tgttgacgga cgatgaagcg cgccgcatct
     2881 gggatcagac gcttgcgctt ctcaacgact gcgcgacctt tcaaacctat gcctggggtg
     2941 agtaccggcg cggtttgggc tgggagccgt gtcgttgggt cgctttgaat aacgagggcg
     3001 aagtcgtcgc gatgatgcag ggctgtctgc gtcggtaccc gttcggtctt ggtctggtct
     3061 ggagcgaagg tgggccggtc ggcgatctct cggtctgcga tgaaaacttg caggcggcga
     3121 ttctgcgcac gaccgggctg cgacgaatct actgccgctt tcgttgcgat cgcgaaagag
     3181 atattcagga tgctctgaga ttgagcgcac agggttggag cacgccctgg tctctcttgt
     3241 cgagtaacta ttcgatgact ctcgatttaa gtcaggaaga agatcggctg ctggctgcgt
     3301 gcgaacagaa ctggcgcagg aacctccggc gttcgaagga ttgcaacttg tcgatccggc
     3361 aatggctgga tccgaacgtt gatgaagtct tgtcggtcta tgtcgcgatg caaaacttta
     3421 agggccttga ggaacagcat tcgcgcgacg agatcgaaca gctcttgaag aatgtcaaac
     3481 agcagatcgt tctctatcgt tgcgatgacg aacaaggcga agtagttagc atattagggt
     3541 gcctggtcgt cggtgatcga gcctgcgcct tgttctgggc cacgactgag caaggtcgaa
     3601 agctgcatgc gtcgtatgcg atcttctggg cactggtcca gcactgccag aggatcggtg
     3661 tgaagttata cgacctcgcg ggaatcgatc cggtgcggaa tcccggagtc tatcgtttca
     3721 aaagagcaac cggcgccgcg ccatttgaat acttgggaga gtgggattgg gcgagtcgtt
     3781 cgtggttgcg ttggtttggc aattgggcca tcgcgcgacg gaagcgcatc aaccacgcgg
     3841 ctctcgcgtt gaagaaatcg tacattagtt cccgtgcgcc ggcgcctcta attgtagcgt
     3901 cgcagggaac aactcgagtt cccagcagtt gaattcgaat gagggatttg atctagaagt
     3961 gattgctcgc agcaccagac taatcctgat cgccgacgcg accatcctgt tgtccaacgt
     4021 cgtctccagc ttgatcggcg cgagagcgtt gggccccgca ggtcgcggtg atctgctgat
     4081 cgtcgtgctg tggccgcccg tggtcgcgat gctcgcaggc ttcggattgc cgacagccta
     4141 tcgctactgg atggcgaagg agcccgagcg tgtctcaaga ctcttctcga atgcggtgat
     4201 ctacacattc gttgtcggcg tgatcagcat cggcatcgcc gatttgaccg ttccgcatct
     4261 tgtcggacag cgcagtgccg aagtcatgct gttgttgcga atctatcaag tgaacatacc
     4321 ggcggcgctg tttctcgatc tgatgcgggg tttgttggaa ggcacacgcc gttttgggtg
     4381 ggcgggcgcg gctcgtttga ttttcttcgg cgtgcaggcg gtgggcttcg tggtgctttg
     4441 gtccatcggc aggttcac
//
LOCUS       DASZZE010000341         1632 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_57899, whole genome shotgun sequence.
ACCESSION   DASZZE010000341 DASZZE010000000
VERSION     DASZZE010000341.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1632
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57899"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1632)
                     /locus_tag="VHD88_06580"
     CDS             complement(<1..>1632)
                     /locus_tag="VHD88_06580"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HVS21495.1"
                     /translation="FLTPLSRGAQITYLPELTSDHLAKAIKNGHVTGMVGVPALWELL
                     HRRIKNRLHERGKLVGETADLLMKFNAWLRDKTPLNLGQLFFYPIHEGMGGRVRYFIS
                     GGSALNDKVQRDFQGLGFTILEGYGLTEASPVLTVTRPENRMLAGTVGKSLPGVQVRI
                     SEPDASGVGEVIARGPNVMLGYFGNEDATREALVDRWLYTGDLGRIDDEGNLYLVGRS
                     KEIIVDTNGKNVYPDEVEEVYQDSPYIKELSVIGLPDGIGEKVACMVVPDEEYDIALS
                     RPEVRRKIEEHFREVSAALPYYKRVKLLHFTDQELPRTATGKVKRREVTKMMQAAEEH
                     ARSSQLGLGPDADAGDAAWLLDIIASVSNRSLDEVSINSRLGELGFDSLMFVELATAI
                     ENAGGSLTAPERLNEVQDVRELLTVVNRTGPAKRDGARLRLESDKRDDGEIRIPEFLR
                     AIGNKGVDLAQRALYERLLRTKYEGQTNIPYHTNFIVAANHQSHLDMGLTKMALGGAG
                     EDLVALAAADYFFDTKYKRAYMETFTNLVPMERTG"
BASE COUNT          328 a          492 c          462 g          350 t
ORIGIN      
        1 atccggtgcg ttccatcggc accaggttcg taaaagtttc catgtaagcg cgcttgtact
       61 tcgtgtcgaa gaaataatcc gcggcggcga gcgcgacgag atcctcgccg gcgccgccga
      121 gcgccatttt cgtcagaccc atgtcgagat gcgactgatg atttgcggcg acgatgaagt
      181 tagtgtgata cggaatgttc gtctggcctt cgtactttgt ccgcaacagg cgttcataga
      241 gcgcgcgctg cgcgagatcc acgcctttat tgccgatggc gcgcagaaat tcaggaatgc
      301 gaatctcgcc atcatcgcgt ttgtcagact caagccgcag ccgcgcacca tcgcgcttcg
      361 ccggtccggt gcggttgacg acggttaaca gttcgcgcac atcctgaact tcgttgagac
      421 gttccggcgc agtcagcgag ccgccggcgt tctcgatcgc ggtcgcgagt tcgacgaaca
      481 tcaagctgtc aaagcccagc tcgcccaagc gcgaattgat cgacacttca tcgagtgatc
      541 gattcgaaac tgacgcgatg atatcgagta accacgcggc gtcgccggca tctgcgtcgg
      601 gccccagacc gagttgcgaa gaccgggcgt gctcctcagc cgcttgcatc atcttggtaa
      661 cctcgcggcg tttcaccttg ccggtcgcgg tacgtggcaa ctcttgatcg gtgaaatgca
      721 gcaacttgac gcgtttgtag taaggcagcg cggccgagac ttcgcggaag tgctcttcga
      781 ttttgcggcg cacttcgggg cgcgaaagcg cgatgtcgta ttcctcgtca ggcacgacca
      841 tgcacgcgac tttctcgccg atgccgtcgg gcaatccgat cacgctcagc tctttgatgt
      901 aaggcgaatc ctgataaacc tcttcgactt cgtcggggta aacattcttg ccgttcgtgt
      961 caacgatgat ttctttcgag cgtccgacga gataaagatt tccttcgtca tcgatgcggc
     1021 cgaggtcgcc ggtgtaaagc cagcgatcga ccagcgcctc gcgcgtggca tcttcgttgc
     1081 cgaaatagcc gagcatcacg ttcgggccgc gcgcgatcac ttcgccgaca ccgctcgcgt
     1141 cgggttcgct aattcgcacc tgaacgccag gaagcgactt gcccactgtg ccggccagca
     1201 tacggttctc tggtcgagta acggtcagca ccggtgaagc ctcagtcaga ccatagcctt
     1261 cgagaatcgt gaaacccaat ccctgaaagt cgcgctgcac cttgtcattc agcgcggagc
     1321 cgccgctgat aaaataacga acgcggccgc ccatgccttc gtgaatcgga taaaagaaga
     1381 gttggccgag attcagcggc gtcttgtcgc gcagccacgc gttgaatttc atcagcaagt
     1441 ctgccgtttc gccaaccaac ttgccgcgtt catgcaagcg attcttgatg cgacgatgga
     1501 gcaactccca aagcgccggc acgccgacca tgccggtgac gtggccgttc ttaatcgctt
     1561 tcgccagatg gtcgctcgtc aactccggca gataagtgat ctgcgcgccg cgactcagcg
     1621 gcgttaagaa gc
//
LOCUS       DASZZE010000342         5229 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_77445, whole genome shotgun sequence.
ACCESSION   DASZZE010000342 DASZZE010000000
VERSION     DASZZE010000342.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5229)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5229)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5229
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77445"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..952)
                     /locus_tag="VHD88_06585"
     CDS             complement(<1..952)
                     /locus_tag="VHD88_06585"
                     /inference="COORDINATES: protein motif:HMM:NF012471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004181 - metallocarboxypeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M14 family zinc carboxypeptidase"
                     /protein_id="HVS21496.1"
                     /translation="MNLQRFSRLLVASLLLISACALSIRAQNGYSRDTAQPIDDEYTK
                     KIREYTTETFFNSPLTDYLPASPNVPTPKAVLGDVSGAPGKLPYAEDVYRYMRMLEKA
                     SPRVKVFSIGTTEEGREMIAVAIASESLLAKLEENRARLTKLADPRTINFNEAEADRL
                     VANSFPIYYITGTIHSPETGAPTALMELAYRLAVDESPYIKSIRDGMVTLITPVVEVD
                     GRDRMVDVYNWHLAHPGQNWPGLVYWGHYVAHDNNRDAMGLSLKLTRNVLNTFVGWKA
                     QVLHDLHESVPYLYDNTVGDGPYNAWLDPILTDEWQMIGWK"
     gene            complement(1084..1545)
                     /locus_tag="VHD88_06590"
     CDS             complement(1084..1545)
                     /locus_tag="VHD88_06590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="PIN domain-containing protein"
                     /protein_id="HVS21497.1"
                     /translation="MRTKAKRITTETAFWDTSGLIPLLCFQPQSAKSRQAARVYSRQV
                     VWWATIVEAVGSLSRGLRRGHLSRVETNQAFARLEYMRRHWNEQQPNDHLREQAQRLL
                     RTHDLRAADAMQLAAALAWCSHRPRGRCFIGADNKLSEAAEAEGFTVIRLL"
     gene            complement(1535..1822)
                     /locus_tag="VHD88_06595"
     CDS             complement(1535..1822)
                     /locus_tag="VHD88_06595"
                     /inference="COORDINATES: protein motif:HMM:NF014643.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008219 - cell death [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system
                     prevent-host-death family antitoxin"
                     /protein_id="HVS21498.1"
                     /translation="MKIVNIAELKNRLSTYLNDVKAGEEILVRDRRLPIARIVPLHHD
                     DDQDDELVALAAQGKVRLGEGPLDESFWKLPAPRVSPEVLLSALEEERNED"
     gene            2099..4387
                     /locus_tag="VHD88_06600"
     CDS             2099..4387
                     /locus_tag="VHD88_06600"
                     /inference="COORDINATES: protein motif:HMM:TIGR01701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FdhF/YdeP family oxidoreductase"
                     /protein_id="HVS21499.1"
                     /translation="MAQSPGEREPAEVKPISKVAGGIPAALTAAKYAFSEMGVVRGTR
                     TLLQLNQKEGVDCPGCAWPEPDGQRSHFEFCEEGAKHVADEATTKRVTPEFFKQWGVT
                     ALSHQSDQWLNAQGRLTHPMVLREGSGHYEAIDWPDAFALIARELNSLASPDEAIFYT
                     SGRTSNEAAFLYQLFVRQFGTNNLPDCSNMCHESSSTGMKEAIGFGKGTVTLEDFDLA
                     DAIFVIGQNPGTNHPRMLTSLLRAKRRGCKIVHINPLPETGLTRFKHPQEVWTWLGSG
                     TKLADLFLQVRVNGDVALLKGVMKELLAQEERTPGQVLDHQFINDYTKGFEEFRAALR
                     TVHLGDILAQSGVTKSQFENAARIFIESERVIFCWAMGLTQHKNAVANIQEIVNLMML
                     RGQLGKPGAGLCPVRGHSNVQGDRTMGIWEQPSEEFLDCLGEEFHFGPPRRHGYDTVH
                     AIQAMHEGKAKVFFAMGGNFLSATPDTEYTAEALRRCRLTAHVSTKLNRAHLITGKQA
                     LILPCLGRTEIDAQADGLQFVSTENSMAVVETSQGRLKPASEHLLSEPAIVAGLAKAV
                     LSNRTSVDWDGLIANYDCIRDHIERVVPGFEDYNERVRQPGGFYLPNPIRNLEFKTKD
                     GRAHFTVNELARVDLKPGQFLMMTMRSHDQFNTTIYGLDDRYRGIRNGRRVVFLNPED
                     IRRSGLKDGQTVDLTSHFEGEERIARRFVVVPYSIPRRCAATYFPETNVLVAVRNFAD
                     KSHTPASKSVVISIQPSENQEA"
     gene            4496..4996
                     /locus_tag="VHD88_06605"
     CDS             4496..4996
                     /locus_tag="VHD88_06605"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0033745 - L-methionine-(R)-S-oxide
                     reductase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HVS21500.1"
                     /translation="MTLQLAEQRSTSKSELYDQLASQLSSLLAGERDLVANAANFASL
                     VFHSLPDLNWAGFYLVKDGELVLGPFQGQPACMRIAFGRGVCGAAAAKCATTIVPNVH
                     EFPGHIACDTESNSEIVVPLMKNEHFIGVLDLDSPVLSHFDEEDAAGLETLVKILLAS
                     TISDDN"
     gene            4986..>5229
                     /locus_tag="VHD88_06610"
     CDS             4986..>5229
                     /locus_tag="VHD88_06610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21501.1"
                     /translation="MTIKKPTIVAVSGLSSNTGKTTLVCELLQSLPGWEAIKLTRGHY
                     RSCGKDPRGCCVSDLLRDEPLIRSDREANYEAGKDTG"
BASE COUNT         1164 a         1471 c         1475 g         1119 t
ORIGIN      
        1 ttttccatcc gatcatctgc cactcgtcgg tcaggatcgg atcgagccag gcgttgtatg
       61 gcccatcacc gaccgtgttg tcgtagagat acggcacgga ctcgtgcagg tcgtgcagca
      121 cttgcgcttt ccagccaaca aacgtattca aaacattgcg cgtgagtttc agcgacagac
      181 ccatcgcgtc gcgattgttg tcgtgcgcga cgtagtggcc ccaatagaca agccccggcc
      241 agttctgacc cggatgcgcc aggtgccagt tgtacacgtc aaccatgcga tcgcgtccat
      301 caacttcgac caccggcgtg atcagcgtaa ccatgccgtc gcggatcgac ttgatgtaag
      361 gactctcgtc aacggccaga cgataagcga gttccatcaa cgcagtcggc gcgcccgtct
      421 ctggcgagtg aatcgtgccc gtgatgtagt agatcggaaa cgaattagca accaggcgat
      481 cggcttcggc ctcgttgaag ttaatcgtcc ggggatcggc gagcttagtc agcctcgcgc
      541 gattctcttc gagctttgcc agcaacgact ccgaagcaat cgccacggcg atcatctcgc
      601 ggccttcttc ggtcgtgccg atggaaaaga ctttcacgcg cgggctcgcc ttctccaaca
      661 tgcgcatgta gcgatagacg tcttcggcgt aaggcagctt gcccggcgcg cccgagacat
      721 cgcccagcac cgctttcggc gtaggcacgt tcggagacgc tggcaaataa tcggtcagcg
      781 gcgaattgaa aaaagtttca gtcgtgtact cacgaatctt ttttgtgtat tcgtcgtcga
      841 ttggctgagc ggtatcgcgg ctgtatccgt tctgcgcgcg gatcgaaagc gcgcaggcgc
      901 tgataagaag caagcttgcg acgagcaagc ggctaaaccg ttggagattc atctttttga
      961 ttcctcacaa aattggcggc ttcaaagtct tcttcgcccg gacagataga ttcgggggaa
     1021 gaaaaagctt ttattctaat cgcggcggca agtcaatcgg tcgctgaatt ctgctcgcct
     1081 ttcttacagc aagcgtatta cggtgaagcc ttcggcttcc gccgcttctg aaagtttatt
     1141 gtcggctcca atgaagcagc gtccgcgcgg ccgatgagag caccaagcga gagccgcagc
     1201 aagttgcatt gcatcggcgg cgcgtaagtc gtgcgtcctc agcagacgct gggcctgttc
     1261 gcgtaaatgg tcgttaggtt gctgctcatt ccagtggcgg cgcatgtatt caagcctcgc
     1321 aaacgcctga ttggtttcga cccgactcag atgccctctt cgcagccccc gactaagcga
     1381 ccctacagct tcgacaatcg ttgcccacca gacaacctgg cgactataaa cccgcgcggc
     1441 ctgtcgcgac tttgccgact gaggttgaaa acaaagcagc gggatcaatc cgctcgtgtc
     1501 ccagaaagca gtctcggtcg taattctttt cgccttagtc ctcattccgt tcttcttcca
     1561 gcgcgctgag cagaacttcg ggtgagacac ggggcgccgg caacttccag aacgattcat
     1621 caagcggccc ctcgccgagt cgaaccttgc cttgcgcagc cagcgccact aattcatcgt
     1681 cctgatcgtc atcgtgatga agcggcacga ttcgagcaat gggtaagcgg cgatcgcgga
     1741 ccaggatctc ttctccagcc ttgacgtcat taaggtacgt gctcaggcga ttcttcagtt
     1801 cggcaatatt gacaatcttc attcgatttg ctcctcctca ttcctggata tgggcataaa
     1861 ggccacacta acttgagtat tatagccaga tggttgacga cccacaagct tatcccgaaa
     1921 gtggtctctt ccgaagagga gtttcacaag acgccagtca tacccgcgct tttcaaaagc
     1981 ttcttccggc tctagaatct cctggtagtc ttaacagact aaagtcatgg cgcaacttgg
     2041 aaaagaaatc gagtcaagcg agggtatctc atccgaactg cgagaccgat cgcttccctt
     2101 ggctcagtcg ccgggggaac gcgagccggc ggaggtcaag ccgatcagca aagtcgcggg
     2161 cggtattccc gccgcgctta ccgcagcgaa gtatgcgttc agcgaaatgg gagtggtgcg
     2221 cggcacgcgc acgcttctgc agttgaatca aaaagaaggc gtcgattgtc ccggttgcgc
     2281 ctggcctgag cctgacggcc agcgttcgca tttcgagttt tgcgaagaag gcgccaagca
     2341 tgtcgccgat gaggccacga caaagcgcgt cacgccggag tttttcaaac aatggggcgt
     2401 cactgcgctt tcacatcagt ccgatcagtg gctcaacgca caaggccgcc tcacgcatcc
     2461 gatggtcttg cgcgagggca gcggtcatta cgaggcgatt gattggccag acgcgttcgc
     2521 gttgatcgcg cgtgaactga attcgctcgc gtcgcccgac gaagcgatct tttacacctc
     2581 gggtcggacc agcaacgaag ccgcgtttct gtatcaactc ttcgtgcggc agtttggcac
     2641 gaacaacctg cccgactgtt cgaacatgtg ccacgaatcg agcagcacgg gaatgaaaga
     2701 ggcgatcggc tttggcaagg gcaccgtcac gctggaggat ttcgatctcg ccgacgcgat
     2761 ttttgtcatc ggccagaatc ccgggacgaa tcatccgcgc atgttgacct cgctgctccg
     2821 ggccaagcgg cgcggctgca aaatcgtgca catcaatccg ctgccggaaa ccggcctcac
     2881 gcgcttcaaa catccacagg aagtttggac gtggctggga agcgggacga agctggccga
     2941 tctgtttctg caagtgcgcg tcaacggcga tgtggctttg ctaaaagggg tcatgaaaga
     3001 gctgctcgcc caggaagagc gaacaccggg ccaggtactc gaccatcagt tcatcaatga
     3061 ttacacgaag gggtttgaag aatttagggc ggcgctgcgc accgttcatc tcggcgatat
     3121 tttggcgcag tcgggagtca ctaagagcca atttgaaaat gcagcgcgaa tcttcattga
     3181 atccgagcga gtgatttttt gttgggccat gggcctgacg caacacaaga acgcggtcgc
     3241 caacattcag gagatcgtca acctgatgat gctgcgcgga cagctcggca agccgggcgc
     3301 cggcctctgt ccggtgcgcg gccatagcaa cgtgcagggc gaccgcacga tgggcatttg
     3361 ggaacagccg agcgaggagt ttctcgattg tctaggcgaa gaattccatt tcgggccgcc
     3421 gcgtcgccat ggttatgaca cggtgcacgc gatccaggcg atgcacgaag gcaaagcgaa
     3481 agtcttcttc gcgatgggcg gcaactttct ttcagccacg cccgatacag aatacaccgc
     3541 cgaagctctg cgccgctgtc gtctgacagc gcatgtctcg actaaactca atcgcgcgca
     3601 cttgatcacc ggtaagcagg cgctgattct gccgtgtctc ggtcggaccg aaattgatgc
     3661 acaagctgat ggtcttcaat tcgtaagcac cgaaaactca atggcagtgg tcgagacttc
     3721 gcaaggtcga ttgaaacccg cgtcggaaca tttgctgagc gaaccggcga tcgtcgccgg
     3781 actcgcgaaa gcggttttgt cgaatcgaac cagcgtcgat tgggacggtt tgattgccaa
     3841 ctacgattgc attcgcgacc acatcgagcg cgtcgtgccc ggatttgaag actacaacga
     3901 acgcgtgcgc cagccgggcg gattctatct gccgaatccg attcgcaatc tcgaattcaa
     3961 aactaaggac gggcgcgcgc atttcaccgt caatgaattg gcgcgggttg atctaaagcc
     4021 gggacaattc ctcatgatga cgatgcgcag tcacgatcaa ttcaatacca cgatttacgg
     4081 actggacgat cgttatcggg gtattcgcaa cggccggcga gtcgtctttc tgaatccgga
     4141 agacatccgc agaagcggtc tgaaagacgg ccaaaccgtc gatctcacga gtcactttga
     4201 aggcgaagag cgcatcgcgc gccgttttgt cgtcgtgccg tatagcatcc cgcgtcgctg
     4261 cgcggcaacc tattttcccg aaaccaacgt gctggtagcg gtgcgcaact tcgcggacaa
     4321 gagccacacg ccggcgtcga agtcggtggt gattagtatc cagccgtcgg agaatcagga
     4381 ggcatgataa ttcagaattt tcaccacaga gacacagagg atgcacagag acccacagag
     4441 tttttctctg tgaaactctg tgcgatctcc gtgtctctgt ggtgaaggat ccaacatgac
     4501 acttcaacta gcagagcaac gatcaacttc gaaaagcgaa ctctacgacc aactcgcgtc
     4561 gcaactgagc agcttgctcg ccggcgagcg cgatctggtt gcgaacgccg caaacttcgc
     4621 gtcgctcgtg tttcattcgc tgcctgattt gaactgggct ggcttctatc tcgtgaaaga
     4681 cggagaattg gtgctcggtc cattccaggg ccaacccgcc tgcatgcgga tcgctttcgg
     4741 tcggggggtg tgtggcgccg cggccgcaaa gtgcgccacg acgatcgtgc cgaacgtaca
     4801 tgagtttccc ggccacatcg cgtgcgacac cgaatcgaat tctgagattg tggttccgct
     4861 catgaaaaat gaacacttca tcggcgtgct cgatctggat agtcctgtgc tgtcacactt
     4921 cgacgaagag gatgccgccg ggctggaaac actcgtaaaa attctgctgg cttcaacaat
     4981 cagcgatgac aattaagaaa ccaacaatcg tggcggtcag cggtttgtct tcgaacaccg
     5041 gcaagacgac cctggtgtgc gagctgttac agagtctgcc gggctgggaa gcaatcaagc
     5101 tgacgcgcgg gcactatcga tcgtgcggca aggatccgcg cggctgttgc gtgagcgatc
     5161 ttctgcgtga cgaaccgtta attcgttccg accgtgaagc gaattatgaa gcgggcaaag
     5221 acacaggac
//
LOCUS       DASZZE010000343         1788 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_109287, whole genome shotgun sequence.
ACCESSION   DASZZE010000343 DASZZE010000000
VERSION     DASZZE010000343.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1788)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1788)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1788
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109287"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..770)
                     /locus_tag="VHD88_06615"
     CDS             complement(<1..770)
                     /locus_tag="VHD88_06615"
                     /inference="COORDINATES: protein motif:HMM:NF044870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YncE family protein"
                     /protein_id="HVS21502.1"
                     /translation="MRKQLSFTLFVGFLLVLATAALSAGPSGYHVAKKVTLGGEGGFD
                     ALTVDSKARRVYISRSTHVMVVDADTGAVVGDIPNTNGVHGIAIVEDLGKGFTSNGRD
                     STMTIFDLKTLKEIGRVTVGKNPDAIIYDPASKRVFTMNGASQDTTAIDPKTGTVVGT
                     VALGGRPEFAEADEKGRVFINLEDKSEVVEFDAKKLAVLAHWSLGEGKEPTGIAIDRK
                     HHRLFSSCANKLMVVMNADNGQIVASLPIGTGVDGAGF"
     gene            997..1662
                     /locus_tag="VHD88_06620"
     CDS             997..1662
                     /locus_tag="VHD88_06620"
                     /inference="COORDINATES: protein motif:HMM:NF024304.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HVS21503.1"
                     /translation="MNKLPQTVRTTLKRLPQRGVFDRELINQILDEGFICHVGFAVEG
                     QPFVIPTGYARAGDKLYIHGSQASRMLRTLGQGIEVCVTVTLIDGLVLARSAFHHSMN
                     YRSVVVFGRAMVVDDPREKLAALLALSEHIIPARWDDVREPNERELQLTTVLSMPLDE
                     ASAKVRTGPPLDDEEDYELPVWAGVIPLRLVANAPIPDSRLPAQTDPPHYALGYSRET
                     PKR"
BASE COUNT          350 a          550 c          478 g          410 t
ORIGIN      
        1 tcgaaacccg cgccgtcaac tccggtgccg atgggcagcg aagcgacgat ctggccgttg
       61 tccgcgttca tcacgaccat cagcttgttg gcgcagctgg aaaaaagccg gtgatgcttg
      121 cggtctattg cgattcctgt cggctctttc ccctcgccga gtgaccaatg agcaaggacg
      181 gccagtttct tcgcatcgaa ctcgactacc tcgctcttat cttccagatt gatgaagacc
      241 cggccctttt catccgcctc cgcgaattca ggccggccgc cgagcgcgac tgtgccgacc
      301 accgttccgg tcttggggtc aatcgccgtt gtgtcctgac tggcgccgtt cattgtgaaa
      361 actcgcttcg aagcagggtc gtaaatgatc gcgtccgggt tcttgcccac cgttactcgg
      421 ccgatttctt tcaaggtttt gagatcgaag atagtcatcg tcgaatctcg accgttgctg
      481 gtgaagcctt tgcccaggtc ctcgacgatc gctatgccat gcacgccgtt cgtgttggga
      541 atgtcgccga cgaccgcgcc ggtatcggcg tccacaacca tcacgtgcgt cgaacgcgag
      601 atgtagacgc gccgcgcttt gctatcgact gtgagggcgt caaaacctcc ctcgccaccg
      661 agcgtaactt tcttcgcgac gtggtatccc gacggcccgg cactcagcgc cgcggtcgca
      721 agcaccaaaa gaaaaccgac gaacaaggtg aacgaaagct gtttccgcat cacttgcctc
      781 ctcaagaact attctggaca cgcggaaact actcttgtca gcggcctcgc gtcaagtcac
      841 cgagctcgtc ggcctgtcct gaggcaaagc agctcacccc agcatggaag cgcgccggag
      901 cctgaacctt cggcgcattc ttgtttgtgt gatagcttgt tcgcgactgc gcttctaaac
      961 tattctcagc gaaatccaag accgaccgag gattgattga ataagcttcc ccaaactgta
     1021 cgcacaactt taaagcgcct tccgcagcgc ggtgtgttcg atcgcgaatt gattaatcag
     1081 attcttgatg aaggcttcat ctgtcacgtc ggcttcgctg ttgaaggcca gccgtttgtg
     1141 attcccaccg gctacgcgcg tgccggcgac aagctctaca tccacggatc gcaagccagt
     1201 cggatgctgc gcacgttggg gcagggaatt gaagtctgcg taacggtgac tttgatcgac
     1261 ggcctggttc tcgcgcgctc cgcgtttcat cactcgatga actatcgttc cgtcgttgtc
     1321 tttggtcgcg cgatggtcgt cgatgatccc cgagaaaagc tcgccgcttt gctggccttg
     1381 tctgagcaca ttatccccgc tcgctgggat gacgtccgtg aaccgaatga gcgcgaactt
     1441 caattgacga cggtgctgtc gatgccactc gacgaagctt cagccaaagt gcgcaccggc
     1501 ccgccgctcg atgacgaaga agattacgag ctgcccgtct gggccggcgt cattccgctg
     1561 cgtctcgttg cgaacgcgcc gattcctgat tcgcgtttgc cagcccagac cgatcctccg
     1621 cattacgcgc ttggttattc gcgggagacg ccaaaacgct gaaaagcgac gcacaatcag
     1681 caatcaaggc ttagcgagct ttcccgcctt gctacttttc tacaaatggt ccatagtgac
     1741 ttacggttaa tccttctctc gcgcatcgac ggtgatgcgc cccgcgca
//
LOCUS       DASZZE010000344         4746 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_9833, whole genome shotgun sequence.
ACCESSION   DASZZE010000344 DASZZE010000000
VERSION     DASZZE010000344.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4746)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4746)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4746
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9833"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..945
                     /gene="rpsB"
                     /locus_tag="VHD88_06625"
     CDS             <1..945
                     /gene="rpsB"
                     /locus_tag="VHD88_06625"
                     /inference="COORDINATES: protein motif:HMM:TIGR01011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HVS21504.1"
                     /translation="YINQFTKGESCLVTVTMKELLEAGVHFGHQVRRWNPKMKEYIFG
                     ERNGIYIIDLQKTQKMFREALQFVTNMVAEDRGKTVLFVGTKRQAQDAVREEAERSGQ
                     FYVNQRWLGGLLTNFQTVQKSIKRLKDLEAMQTDGRYEKLTKKERIKLDRERLGLEKV
                     LSGIKSMNRLPDTVFIIDVRKEEIAVAEANKLGIPVIAVVDTNCSPEHVDYVIPGNDD
                     ALRAVRLFASRVADAVLEGQQMLTEGGATSEASTGTAEAETSTASTEVESAEAGPAIE
                     DADQETPAEPSSLASAETAPSETTSQDESESVEVVAAT"
     gene            1044..1709
                     /gene="tsf"
                     /locus_tag="VHD88_06630"
     CDS             1044..1709
                     /gene="tsf"
                     /locus_tag="VHD88_06630"
                     /inference="COORDINATES: protein motif:HMM:TIGR00116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor Ts"
                     /protein_id="HVS21505.1"
                     /translation="MGDTTAAAIKELRDKTGAGMMECKRALIEAEGNQERGIEILRER
                     GLASAKKKEGRVAAEGVVGSYIHMGGKVGVLVEVNCETDFVARGDEFQQLVKDIAMHI
                     AAAEPRYVSQAEIPADALDKEREIARAQAKNDPKVANKPDQVIDKIVEGRLNKFYEEV
                     VLLDQPFIKDPAKTVGELVTDKIAKTGEKITIRRFARYKMGEGLAKREDDFGDEVAKL
                     AGQ"
     gene            1796..2548
                     /gene="pyrH"
                     /locus_tag="VHD88_06635"
     CDS             1796..2548
                     /gene="pyrH"
                     /locus_tag="VHD88_06635"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: protein motif:HMM:TIGR02075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033862 - UMP kinase activity [Evidence
                     IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HVS21506.1"
                     /translation="MNTDLQNQPAFRRVLLKISGEALVGEQSFGIDVNVARAVAEEIK
                     QVHGLGVEVAVVVGGGNIFRGLSKSAGDMDRSSADYIGMLATVMNAVVLQDALEKTGV
                     HTRVLSAIDIPELAEPFIPRRAIRHLEKQRIVIFAAGTGNPFFSTDSAAALRALEIKA
                     GVILKATKVDGVYSADPIKDATATRFDSITYQEVLEKQLKVMDASAISLCMDNDLPII
                     IFNMLRPGNILRVVKGEAGIGTRVSLEKPQTQ"
     gene            2644..3204
                     /gene="frr"
                     /locus_tag="VHD88_06640"
     CDS             2644..3204
                     /gene="frr"
                     /locus_tag="VHD88_06640"
                     /inference="COORDINATES: protein motif:HMM:TIGR00496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008135 - translation factor activity, RNA
                     binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HVS21507.1"
                     /translation="MSEKDVIKETKPRMDTAIEDVRRKLTTVRTGRASVSLLDTIVVD
                     YYGTPTPLNQMASVHAPEPQMLTVQPWDPTQLGNVEKAIRAADLGLNPSNDGKLVRIP
                     IPPLNEERRKQLAKQVHEIAEEHRTAVRHIRRDANDKLKKLLKDKTISEDNERDGLDE
                     VQKLTDSYITKIDELSKSKEHEIMSV"
     gene            3209..>4746
                     /locus_tag="VHD88_06645"
     CDS             3209..>4746
                     /locus_tag="VHD88_06645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21508.1"
                     /translation="MIISLALSFIAIASGALLTYTYEEDAPLVSRLCSGACIGFGALG
                     LVGFVLASFLGLTPVALGLTALVLATPFLLLTNQRCRNYLDEDCNRALQAISRASSRP
                     DRWAFIYFFFYAGVMIAMWLVFSRALLEKPDGIYTGVLNNYGDLPFHLSVITRFAFGQ
                     NFPPEDPTFAGVRFTYPFITDFISAMFVRAGASLRDSMFIENYVIGVALVGVLHRFGQ
                     QLLRNGTAAILTPVLVILNGGFGWAMLFSDVNKSDGGVFQVLRHIPHSYTILPEVASG
                     WRWGNAVTSLLVTQRGFLLGIPLAVIVFTQWWAAMKGEKGKGEGGKGKGSRAKQSPIS
                     QPDHSPLTLFPLSRSAKRMLAAGAVAGLLPLVHAHSFIVVMGMAGCIALINLRKWREW
                     LAFFVVAILIAGPQLLWSTHGSAVSTRAFIGWQFGWDNTNENFFWFWFKNTGLFIPLL
                     IGALLWKQKDYLVSRKLLFFYLPFTLCFIVPNVMKLAPWIWDNVKVLFYWWIASAPIV
                     ALVLA"
BASE COUNT         1084 a         1281 c         1382 g          999 t
ORIGIN      
        1 tacataaacc aattcacaaa aggagaaagt tgtttggtaa ccgttacgat gaaagaattg
       61 ctggaggccg gtgtgcattt cggtcaccag gtacgccgtt ggaacccgaa aatgaaggaa
      121 tacattttcg gcgagcgtaa cgggatctac attatcgatc tgcaaaaaac gcagaagatg
      181 tttcgcgaag cgctccagtt cgtgacgaac atggtcgcgg aggatcgcgg caagaccgtt
      241 ctgtttgtcg gcactaagcg tcaggcgcag gacgcagtgc gcgaggaagc cgagcgttcc
      301 ggccagttct atgttaacca gcgctggctc ggcggtctgt tgacgaattt ccagacggtg
      361 caaaagtcga tcaagcgttt gaaagatctc gaagcgatgc agaccgacgg gcgttacgag
      421 aagctcacta aaaaggagcg catcaaactc gatcgcgaac gactagggtt ggaaaaagtg
      481 ctttcgggca tcaaaagcat gaatcgtttg cccgatacgg ttttcattat cgatgtgcgc
      541 aaggaagaaa tagccgtcgc cgaagctaac aagctcggca ttccggtgat tgcggtcgtc
      601 gataccaact gttcgccgga acacgttgac tatgtaattc ccggaaacga cgacgcgctg
      661 cgcgcggtca ggctgttcgc atcacgcgtc gctgatgcag tgctcgaggg ccagcagatg
      721 ctcaccgaag gtggcgcaac ctcggaagct tcgaccggga cagccgaggc cgaaacctcg
      781 acagcctcga ctgaagttga gagcgccgaa gctgggccag cgattgaaga cgcggatcag
      841 gagacgcccg cagaaccttc gtcattagca tctgccgaaa ctgcgcccag cgaaactaca
      901 tcacaagacg agagtgagag tgtggaggtc gtcgccgcga cttaaagacc taaggtaaga
      961 ttcaattcat cggcgagcgc agcctcaaaa gcgggaactc cgccgggctg cgcgttttaa
     1021 taaagggaga gactgaatta atcatgggag acacaacagc agcggccatc aaggagctgc
     1081 gcgacaaaac aggggccggc atgatggagt gcaagcgagc gctcatcgaa gccgagggta
     1141 atcaagagcg cgggatcgag attctgcgcg aacgcggact ggcgtctgcg aaaaagaagg
     1201 aaggtcgcgt ggcggccgaa ggggtggtcg gctcgtacat tcacatgggc ggcaaggtcg
     1261 gcgtgctggt cgaagtaaac tgcgagacgg attttgtcgc gcgcggcgac gagtttcagc
     1321 aactggtcaa agacattgcg atgcacatcg ccgcagccga gccgcgctac gtttcgcagg
     1381 cagagattcc cgccgacgcg ctcgacaagg aacgagagat cgcgagggcg caagcgaaga
     1441 acgatcccaa ggttgccaac aagccggacc aggtgatcga caaaatcgtc gaagggcgat
     1501 tgaacaagtt ctacgaagaa gtcgtcttgc tcgatcagcc gttcatcaag gatccagcaa
     1561 agacagttgg cgaattagtg accgataaaa ttgccaagac cggcgagaag attacgatac
     1621 gtcggttcgc gcgatacaag atgggcgaag gtctcgccaa gcgcgaagat gattttggcg
     1681 atgaagttgc gaaacttgct ggtcagtaac ccgtcgaatt tatttcttct ttgcgccttt
     1741 gcgagaaata ctgttccgca aagaccccaa gagaaccgcg gaaccagttt ccagaatgaa
     1801 caccgacctt caaaatcaac cagcgttccg ccgcgtcctc ttgaagattt ccggcgaggc
     1861 gctggtcgga gagcaaagct tcggcattga cgtgaacgtc gcgcgcgccg tggctgaaga
     1921 gatcaagcag gtccacggcc tgggcgttga agtagccgtg gtcgtcggcg gcggtaatat
     1981 ctttcgcggg ctttcgaaga gcgctggcga catggatcgc tcttccgccg attacatcgg
     2041 gatgctcgcg accgtgatga atgccgtcgt gctgcaggac gcgctggaaa aaaccggcgt
     2101 gcacacgcgc gtgctttccg cgatcgacat tccggaactc gccgaaccct tcattccccg
     2161 tcgcgcgatt cgccatcttg aaaagcagcg catcgtgatc ttcgccgccg gcaccggcaa
     2221 tccattcttc tcgaccgact ccgccgcggc cctgcgcgcg ctcgaaataa aagccggcgt
     2281 aattctgaaa gcaaccaagg ttgatggcgt gtattcagca gatccaatca aagacgcgac
     2341 ggcaactcga ttcgactcca tcacgtatca agaggtactt gaaaagcagt tgaaggtgat
     2401 ggatgcgtcg gcaatctcgc tttgcatgga caacgatttg cccatcatca ttttcaacat
     2461 gctcaggcca ggcaacattc tgcgcgtggt caagggcgaa gccggaatcg gcacgcgcgt
     2521 gtccctcgaa aaaccccaaa cgcagtgaca ggtgataagt tacgagtgac aagcgaccat
     2581 tgaccaagat aagattttcc tccagctcgt cactattcac ttgtcacttg tcactggagc
     2641 cttatgagtg aaaaagacgt catcaaagaa accaagccgc gcatggacac tgcgatcgaa
     2701 gatgtccgtc gcaagctgac caccgtgcgc accggccgcg cttcggtaag cctgctcgac
     2761 accattgtcg ttgattatta cggcacgccg acgccgctca accagatggc ttccgtgcat
     2821 gcgcctgagc cgcagatgct gaccgtgcag ccgtgggatc cgacgcagct cggcaatgtc
     2881 gagaaagcga tacgcgctgc tgacctgggt ttgaatccgt cgaacgacgg caagctggtc
     2941 cgcattccca ttccgccgct caatgaagag cgccgcaagc aactcgcgaa gcaggttcac
     3001 gaaatcgcgg aagaacatcg tactgccgtc cgccacatcc gccgcgatgc caacgacaaa
     3061 ctgaaaaagt tgctgaagga caaaacgatt tcggaagaca acgaacggga cgggttggat
     3121 gaggttcaga aactcaccga cagctacatc acaaagatcg acgagctgtc aaagtccaaa
     3181 gaacacgaaa ttatgagcgt ctagtttcat gatcatcagt ctcgctctat ctttcattgc
     3241 catcgcgagc ggcgcgcttc tcacgtacac ctacgaagag gatgcgccgc tcgtttcgcg
     3301 tctgtgctca ggcgcttgca tcggctttgg tgcgctgggc cttgttggtt ttgttctcgc
     3361 atcatttctc gggctgactc ccgtcgcgct gggcctgacc gcattggttc tggcaactcc
     3421 atttttgctg ctgacaaatc agcgctgccg caattattta gacgaggact gcaaccgcgc
     3481 cttgcaggcg atcagccgtg caagctcgcg tcccgatcga tgggcgttca tttatttttt
     3541 cttctatgcc ggcgtgatga tcgcgatgtg gctggtattt tcacgcgcgc tcctggaaaa
     3601 gcccgacggc atttacaccg gcgtgctcaa caactatggt gacctgccgt ttcacctgag
     3661 cgtcatcacg cgctttgcct tcggccaaaa ctttccgccg gaagatccga cgtttgccgg
     3721 tgtgcgtttc acttatccat ttattactga cttcatatcg gcgatgtttg tgcgcgccgg
     3781 cgcgagcttg cgcgactcga tgttcatcga aaactacgtc atcggcgtcg cgctggttgg
     3841 cgtgctgcat cgcttcggac agcaactctt gcgcaacggc accgcggcga ttctgacgcc
     3901 ggtgctcgtg attctgaacg gcggctttgg ctgggcgatg ctgttcagcg acgtgaacaa
     3961 gagcgacggc ggcgtgtttc aagtgctcag gcacattccg cattcgtaca cgattcttcc
     4021 tgaagtcgcg agcggctggc gctggggcaa cgccgtcacc agtttgctcg tgacgcagcg
     4081 cggatttctg ctcggcattc cgctcgcggt gattgtgttc acgcagtggt gggcggcgat
     4141 gaaaggcgaa aaggggaaag gggaaggggg aaaggggaag ggatcacgag ccaagcagtc
     4201 gccgatatcg cagcccgacc attccccact tacccttttc cccttgtccc gatccgcgaa
     4261 gcggatgttg gctgccggcg cggtcgccgg attgttgcca cttgttcatg cgcacagctt
     4321 catcgtggtt atgggaatgg ctggctgcat cgcgctgatc aacttgcgca agtggcgcga
     4381 gtggctcgca tttttcgtcg ttgcgatatt gatagccggg ccgcagttgc tctggtcaac
     4441 gcacggcagc gcggtcagca cgcgcgcctt catcggctgg cagtttggct gggacaatac
     4501 caacgaaaac tttttttggt tctggttcaa gaacacgggg ctattcattc cgcttttgat
     4561 tggcgcgctg ctgtggaagc agaaagacta tctggtttcg cgcaagctgc tgtttttcta
     4621 tctgccgttc acgctctgtt tcatcgtgcc gaacgtgatg aagttggcgc cgtggatttg
     4681 ggacaacgtg aaggtccttt tctattggtg gatcgcttcg gcgccgattg tcgcgctggt
     4741 gctggc
//
LOCUS       DASZZE010000345         2926 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_288278, whole genome shotgun sequence.
ACCESSION   DASZZE010000345 DASZZE010000000
VERSION     DASZZE010000345.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2926)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2926)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2926
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_288278"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(236..2626)
                     /locus_tag="VHD88_06650"
                     /pseudo
     CDS             complement(236..2626)
                     /locus_tag="VHD88_06650"
                     /inference="COORDINATES: protein motif:HMM:NF021942.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="S46 family peptidase"
     gene            complement(2638..>2926)
                     /locus_tag="VHD88_06655"
     CDS             complement(2638..>2926)
                     /locus_tag="VHD88_06655"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HVS21509.1"
                     /translation="YGTSVAVAASGKIIIAGWQRGYGNVVYVDHGSGLTTRYGHLSQI
                     DVTLGQEVTLGQTIGRVGSTGRSTGPHLHYEVRINNQPVDPRQYLPGADKQ"
BASE COUNT          603 a          836 c          815 g          672 t
ORIGIN      
        1 gtccgctgaa gcgaccgtaa tattgtcgcc atcgggcgta gccttccatc cctttggaag
       61 ttgaaactca acccccgctt ccttgtgacg aaaagtgtcg ttgtcctgct gcgcggccct
      121 tcgcaattgg tttcgcacat acagcgccat acagcgacgc gctcagcgct aagcacagaa
      181 tgattgttag tttcttcaaa gttctactcc tgaaatgtgg ctgatgattt cgcatttacg
      241 cggcgcgccg catcgcagcc ggcgcattct tgatgtcgag ttccttcaga agatagcccg
      301 cgccgccaaa cttgtcgaga atgaaaagca cgtagcgaat atcgacggcg attgctcgac
      361 ccttcgcgtc gttgtaaaag aaatcgttgc cgagcccttc gtagttgccg tcgaagataa
      421 tgccgacttg ttcgccatgc ccgttcataa tcggcgagcc tgaattgccg ccaatgatgt
      481 cggtcgtgga gagaaaatca accggcacgt tctgtccgtc cggcgtcgcg taggcaccaa
      541 agtcatgcgc tcgataaagc tgctttagtt tttccggtgc atcgaacggt tcgcgacccg
      601 tgtccttctc gatcaccccc gaaagattcg taaagggctg atagaccgcc gcgtcgtgcg
      661 gcacatagcc cttcacctcg ccataggtga agcgcagcgt ccgattcgca tccggatacg
      721 gattagcacc ccacgcgggc tgcccgcacg gggaccccgc attgctgccg cgcatctcgc
      781 tcatgccctg aaccagcaac ggacgccaac gcgtcacggt ggaattaaag gcgcgctggc
      841 gcgctcctat ctgagtagcg agatcggcga cttcgccggc aaagtcgatc aagggctcgt
      901 ttagctgctt tagttgcgcg ggcgtcatct cgaataatgc cgagactgct tccggagttg
      961 cgaagttctt gccttccgcg aacgtgcgcg caaaatcttc ttcggcgcga actcgagcat
     1021 cgccctgaag attcccgaag cgcttctcaa cggcgtcgat tttttgaccc gttgggagct
     1081 cggcagcttt gcgtagcagg aagacaagta tcgcccgctc gaacgccggg tttcgctcgc
     1141 caaaaatttc cggcaaggcg ccgcgcgctc gcagagacat catcacgagg ttcgcatttc
     1201 gttcagcctg tggtttctct ttgtcggcag cgactctgtt aacgagcgag agaatttgaa
     1261 aaacatcgct taccgcggcc agttgctgaa ccaccagatc ccgctgcgac gtgcgagtca
     1321 attcctcgta cgctttttgc agcgatggca acacctcgcc gtacttcttc tgacggtcgg
     1381 gactctgatt gatccaccgc gtaaaggtcg cttcttccgc tcgcttctgg tccacaattc
     1441 cggcgcgccg catggcgacg acggagcctt caaaatcttt cagcgtgttg gcgatttcaa
     1501 agattctgct ctgcaacttg atctgaagcg ctcggttgtt ctttcccgcg ttttgcagct
     1561 cttcgatctg tttgttgaag acgtcgatga gaaagggcat ggccacgtcc tggttgtacg
     1621 cgatcgaata gctttcccgg taacgccgcg tcgagccggg ataacccatg accatgacga
     1681 actcgttctc tttcacgcca cccatcgaga ttgtcaaaga cttcttcggc ttgtaaggca
     1741 cattactagc cgagtaatca gcgggcttgc cgtcagcgcc gacgtacgcg cgcatgaaag
     1801 tgaagtcgcc gtcgtgacgc ggccactcaa agttgtccgg gtcgccgccg aagaaaccga
     1861 tgttttttgg cggagcatat acgatgcgca cgtcgcgcag gacgagatag gtaaagaggt
     1921 aatacgagag gccctcgttc agtggcagca cgcgggcagt gatgccgtcg gccgagtgtg
     1981 cgttcgcggc ttggagcgaa gtaatctttg attggatagc cgcgttgcga tcggcgggcg
     2041 acatcgtgtc gttgactccg ctcagcacgt ccttagtcac gtctttcaat tcctgcgtga
     2101 tcgaaacggt gtaacccttc gccggcagtt cttcgctgcg attgtttgcg cgataaccgt
     2161 tcgacgcgta gtccttcgaa ggatcagaag ccgacaccag cgcgtcgaaa gccacgtgat
     2221 ggttcgtcag catcaaaccg tcaggcgaaa gaaactagcc ggtgccgccg tcaactatta
     2281 cgaccgcatc cttgatgctc gggccgttcg gattgaaaat ttcggtaatc ggaatcttca
     2341 ggccgcgctg ttgcagcttc ttcagcggaa gctggttgag cgtgtccggc aggaacattc
     2401 cctcgtcgcc caagacgcga actggaatga aactcaccgc aaggaaagcg gaaaggagca
     2461 acgcggcggc gcgcgaataa gtcgaggtca tcggattgtt cttccttcga tcgatcaaaa
     2521 tggaaagttg gatggatggt atcagaacct gggagcgcag gcacccgcct gcggaacatc
     2581 ggcatgactg ccggcgttcc tttgggtcgg aagtcgagca gaccattcca cgtgttacta
     2641 ctgcttatct gcacccggaa gatattgccg cggatcgaca ggttgattgt tgattcgtac
     2701 ttcgtagtgc agatgcgggc cggttgagcg tccggtcgaa ccgacgcggc caatcgtttg
     2761 gcccagcgtc acttcctggc caagcgtcac gtcgatctgt gaaaggtgtc cgtaacgagt
     2821 cgtcagtccg ctaccgtgat cgacatagac aacgttgccg taaccgcgtt gccagccggc
     2881 gatgattatt tttccgctag ccgcgacggc tacggatgtt ccatac
//
LOCUS       DASZZE010000346         3036 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_288294, whole genome shotgun sequence.
ACCESSION   DASZZE010000346 DASZZE010000000
VERSION     DASZZE010000346.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3036)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3036)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3036
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_288294"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..458
                     /locus_tag="VHD88_06660"
     CDS             <1..458
                     /locus_tag="VHD88_06660"
                     /inference="COORDINATES: protein motif:HMM:NF003819.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HVS21510.1"
                     /translation="DRAEVMNALNQTMKEVGQRFDFKGSSAKVALEEKELVLSAEDET
                     KLRNMNEILQQKLVRRGVPLKALSYGDAEPAAGGTVRQRAQIQQGIPQEKAKEVVRFI
                     KDSKVKVQASIQGEMVRVTGRDRDTLQDVIAKLKARDFGINMQFTNYRN"
     gene            535..1554
                     /locus_tag="VHD88_06665"
     CDS             535..1554
                     /locus_tag="VHD88_06665"
                     /inference="COORDINATES: protein motif:HMM:NF012568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HVS21511.1"
                     /translation="MQAFGQTALLDEVRLTAKRIFDLISPELRLVEEEFERQARSNIQ
                     VIAYIGDYLRRSGGKRVRPALTILSDYAVGGDGSNQSSIRMATVMEFLHTATLVHDDI
                     IDKAETRRNRPSVNSEFGNQTAVLMGDWLYMSAFETSLAERSLPTLDILTAVTRKMTE
                     GELLQLTLLGRTDISEAQYFDVIARKTAYLFSACCEIGALLGDANLQTQNMLRDYGMN
                     LGIAFQLVDDLLDFTGTETSLGKPAGADLLEGKVSLPMIFLLQREPRWRAEVQRLIAE
                     GSYENVSRASLLQALENSGALGLAQERAIEYAEAARGSLDGLSDSPYANALSAIPAYI
                     VERDR"
     gene            1780..2355
                     /locus_tag="VHD88_06670"
     CDS             1780..2355
                     /locus_tag="VHD88_06670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21512.1"
                     /translation="MANETLIARLEQSLRQSRGARTRLAARLVELESESEIIRGELAE
                     MDTLAGQTEAAIFRLLSNVMSGPSTPVGTTSVGELEVELERRLARAELSAIVAHQRHS
                     IPSIRSNIEATNDRFFDRTIPQATTMILREAGGPLHVNEIYNLLMEGGFSFTGHNPTI
                     SIAVSLNRNSRFRKVAPGTFDLIIRDAAKAS"
     gene            complement(2420..>3036)
                     /locus_tag="VHD88_06675"
     CDS             complement(2420..>3036)
                     /locus_tag="VHD88_06675"
                     /inference="COORDINATES: protein motif:HMM:NF012700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21513.1"
                     /translation="PRSLVLLDEIGRGTATFDGLSIAWAVAEYLHDSAEHAAKTLFAT
                     HYHELTELAERLPGAQNYQITATEREGEVVFLHRLERGRASKSYGIEVARLAGMPPQA
                     LARARDVLQRLERYELDVFAEQDAEPEAERAAAAGVDDLATTDHRALTSATAGAARRR
                     IAAQSSLFDLANQRVVDELRASDTDALSPEEAKQLLVELRKRLI"
BASE COUNT          670 a          816 c          902 g          648 t
ORIGIN      
        1 tcgatcgcgc cgaagtgatg aacgcactca atcaaacgat gaaagaagtg gggcagcgtt
       61 tcgatttcaa aggcagcagt gccaaagttg cgctcgagga aaaggagctg gtgctctcag
      121 cggaagacga aacgaagctg cgcaacatga acgagatttt gcaacagaag cttgtacgcc
      181 gcggcgttcc tttgaaagcg cttagttacg gagacgctga gccggccgcc ggcggtacag
      241 tccgccagcg cgcgcaaatt cagcaaggca ttccgcagga aaaagcgaaa gaagttgtga
      301 ggtttatcaa ggattcgaag gtgaaagttc aggcttcgat tcagggtgag atggtccggg
      361 tcaccggtcg cgatcgcgat acgctgcaag acgtgattgc gaaactgaaa gccagagact
      421 ttggcatcaa catgcagttt acgaattatc gcaactaatt aacgtaaagt gtcgtttagc
      481 cgccgcactt gtgcggcaaa gcatgcgagg cggacaagtc cgctttctaa acaaatgcaa
      541 gctttcggac agacagcact tctcgatgaa gttcgactaa cggcgaagcg aatctttgat
      601 ttgatttctc cggagttgag actcgtcgag gaagaattcg agcggcaagc ccgttctaac
      661 attcaggtca tcgcgtacat cggcgactat ctacgccgct cgggtggcaa acgcgtgcgt
      721 ccggcgttga cgatcctgtc ggactacgca gtcggcggtg atggatcgaa ccagagttcg
      781 attcgcatgg ccactgtgat ggagtttttg cacacggcga cgctggtcca tgacgacata
      841 atcgacaagg ctgagacgcg acgcaatcgt ccttcggtca acagcgagtt tggaaatcag
      901 acggccgtct tgatgggtga ctggctctac atgagcgcgt tcgaaaccag cttggccgaa
      961 cgatcactac cgactctcga tattctaact gcggtcacgc gcaagatgac tgagggcgag
     1021 ttgctccaac taactctgct tggtcgcacg gacatttcgg aagcgcaata cttcgacgtg
     1081 atcgcgcgca agactgcata tcttttcagc gcgtgttgtg aaatcggcgc gcttctcggc
     1141 gacgccaatc ttcaaacgca gaatatgctg cgtgactatg gcatgaatct ggggattgca
     1201 tttcagttgg ttgatgacct gttggatttc accggcaccg aaacatctct gggtaaaccc
     1261 gccggcgcgg atttgctgga aggcaaagtc tcgctgccga tgatctttct gctccagcgt
     1321 gagccgagat ggcgcgcgga ggtgcaacgg ctgatcgcgg aagggagcta cgaaaatgtt
     1381 tcgcgagcgt cgcttctgca ggcgctggaa aattcaggag cgctgggact cgcgcaggaa
     1441 cgagcaattg aatatgccga agccgcgcgc ggctcgctcg atggtcttag cgattcaccc
     1501 tatgccaacg ccttatccgc catacccgca tacatcgtcg agcgagatcg gtaagccgaa
     1561 ccagaatctt gtggatttcc tgcgccgctt tgccgcttga tcatcggaag gttgattctc
     1621 ccttctccag ttgggagaag ggctggggaa gaggggcgta gctaggcgga ctcgatactc
     1681 aagccctctc cccgaccctc tcccagaggg agagggagag agccgcgatc acgaagtgtt
     1741 gtaaatcggc aatcggcaat ctaaaatcgg caatgttgta tggctaacga aacgctgatc
     1801 gcccgattgg aacaaagctt gcggcaatcg cgcggcgcgc gcacgcgcct ggcggcgcgg
     1861 ctggtcgagt tggaatccga atcggaaatc atccgcggcg agttagctga gatggacacg
     1921 ctcgcgggtc agactgaggc ggcaatcttt cgtctgctct cgaatgttat gagcggaccg
     1981 tcgacgccgg tgggcacgac ttcggtgggt gaattggaag ttgagttgga acgtcgtctg
     2041 gctcgcgcgg agctttcggc gattgtcgcg catcagcgtc acagtattcc ctcgatccgc
     2101 agcaacattg aagcgactaa cgatcgcttt ttcgatcgga caattccgca ggcaacgacg
     2161 atgatcctgc gcgaggccgg cgggccattg catgtgaacg agatttacaa cttgctcatg
     2221 gaaggcggct tcagtttcac cggccacaat cccaccatca gcatcgcggt ctcgctgaat
     2281 cgaaacagtc gctttcgcaa ggtcgcgcct gggacattcg atctgatcat tcgcgatgcg
     2341 gcgaaagcat cgtagcggaa acccgaccgt cagggagggt gcaagtgcgt tcttttcatg
     2401 gacgtgcacc ctttctgcct caaatcagtc gttttcgcaa ttcgacgaga agctgtttcg
     2461 cttcttccgg cgacaacgca tccgtgtcag acgcgcgtag ttcgtcaacg actctctgat
     2521 ttgcaaggtc gaacagcgaa gattgcgcgg cgatgcgccg gcgtgcggct cccgcggtag
     2581 cactggtcaa agctcggtga tcggttgtgg ctagatcatc aacaccggcc gcagcggcgc
     2641 gctcggcttc gggctccgcg tcctgttcag caaagacgtc gagttcatag cgctccaatc
     2701 tttgtaagac gtcgcgcgct cgggccaacg cttgcggcgg catgcctgcc agacgcgcca
     2761 cttcgatgcc gtaggacttc gacgcgcgac cacgttcgag tcgatgcaga aagacgactt
     2821 cgccttcgcg ctctgtcgcc gtgatctgat agttctgtgc gcccggcagt ctttccgcca
     2881 gttccgtcag ttcgtgatag tgcgtggcga agagagtctt ggcggcgtgc tcggctgagt
     2941 catgcagata ttcggccact gcccatgcga tcgagagtcc atcgaatgtc gcggtgccgc
     3001 gcccaatctc gtcaagcaaa accagcgaac gcggtg
//
LOCUS       DASZZE010000347         2543 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_9947, whole genome shotgun sequence.
ACCESSION   DASZZE010000347 DASZZE010000000
VERSION     DASZZE010000347.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2543
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9947"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..549)
                     /locus_tag="VHD88_06680"
     CDS             complement(<1..549)
                     /locus_tag="VHD88_06680"
                     /inference="COORDINATES: protein motif:HMM:NF012286.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HVS21514.1"
                     /translation="MGARKKITVVGAGNVGATAAHWLAAKELGDVVLVDIVEGVPQGK
                     ALDLAEAAPVEGYDVRLIGSNGYDETANSDVVIITAGLARKPGMSRDDLLRTNADIVG
                     KVVDEIVKRSPNSILIIVSNPLDAMCQVALRRSGFPKHSVIGMAGVLDSARMRCFLAE
                     ALDVSVENVTAFVLGGHGDTMVP"
     gene            758..2182
                     /locus_tag="VHD88_06685"
     CDS             758..2182
                     /locus_tag="VHD88_06685"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HVS21515.1"
                     /translation="MDSTLSEELTTKSATELAALIRSRSVSSVEVVEAHLRRIERVNS
                     SLNAVVTLATDVLDHARAAEAALTKGDNIGPLHGVPLTVKDTIDTEGLRTTAGSLLRA
                     NHLPDRDATVVARLKAAGAIILGKTNTAEMAAYYESDNPVFGRTNNPHNPLMTPGGSS
                     GGEAAAIAACLSPAGIGSDLAGSIRLPAHFCGIAGLKPTTGRVPVDGHTPAVSGSLSL
                     GVSIGPMARSVADLALMFSVIADDAPLEINGEQGVNLRGLRAAWYVSDGVASVDEETA
                     RAVERAANVLRDAGVEVDQVKPPGVSQGLGLWLELFSRSVSRQLFELYRGREDEAGPQ
                     VAAMLARISEEDANMAGKVAVAERLAKAVVERERLREELLRWMKTTPLIIAPVGATCA
                     WPHGTQRVSVRGESISVFRAFSYSQTFNVFGLPCVAIPAGRSREGLPIGIQIIGLPAE
                     ERTVLAAAQIIEQALGGWQLVRQA"
     gene            2345..>2543
                     /locus_tag="VHD88_06690"
     CDS             2345..>2543
                     /locus_tag="VHD88_06690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21516.1"
                     /translation="MTFASLIFLQGEGGVLPLAVLLFLLGFLGIFLLIIAVKTIRIVP
                     QASVMLIERLGRFNRVAASGLN"
BASE COUNT          528 a          704 c          756 g          555 t
ORIGIN      
        1 cggcaccatc gtgtcgccat gtccgcccag cacgaacgcc gtgacgttct cgaccgaaac
       61 atccagcgct tccgccagaa agcagcgcat acgcgctgaa tccaaaacgc ccgccatacc
      121 gattacgctg tgcttcggaa aacctgaacg acggagcgcg acctggcaca ttgcgtccaa
      181 aggattcgaa acgataatca gaattgaatt gggcgagcgc ttgacgattt cgtcaacaac
      241 ttttccgacg atgtcggcgt tcgtacgcaa aaggtcgtcg cgactcatgc cgggcttgcg
      301 cgccaatccg gcggtgataa tcacgacatc ggagttcgcg gtttcgtcat agccattgct
      361 gccaatcaga cgcacatcgt aaccttcgac cggcgcagct tcggccaggt caagagcttt
      421 tccctgcggc acgccttcga caatatcaac gagtaccacg tcgccgagtt ccttcgccgc
      481 gagccagtgc gcggcggtag cgccgacgtt tcccgcgccc actaccgtga tcttttttcg
      541 tgctcccatc gtttcgatcc tttcaagcta cgcattttag ttgtaatcat gaagaccttg
      601 ttatcaagcg ccgtcaggcg cggaatgttt atagttcaaa ggcctgagtt tttcaaagcg
      661 ccgaaggagc ggaatcggga ttccgctcct tcggcgcagg ttacaaatat tggcttggct
      721 gctataaata tcacgctcct ccggagctgt tgcgcgaatg gactctactc tgtctgaaga
      781 gctaacaacc aaatccgcga ctgaactcgc ggcgttgatt cgatcacgct ccgtttcatc
      841 cgtcgaagtt gtcgaagccc atcttcggag aatcgagcgc gtcaactcct ctctgaacgc
      901 tgtcgtcacg cttgcgaccg acgtgctcga tcacgcgcga gccgcggaag cagcgttgac
      961 gaaaggcgac aacatcggtc cgctgcacgg cgtgccgctg acagtgaaag acacgatcga
     1021 caccgaaggc ttgcgtacga ctgcgggatc gctcttgcgt gcgaatcatc tccccgatcg
     1081 cgatgcgacg gttgtcgctc gactgaaagc agcgggcgcg atcatcctcg gcaaaaccaa
     1141 cacggcggag atggctgctt attacgagag tgacaatccc gtctttggtc gcacgaacaa
     1201 tcctcataat ccgctgatga caccaggcgg ttcgagcggt ggtgaagcag ccgcgattgc
     1261 ggcttgtctt tcgcccgcgg gaattggcag cgaccttgcc ggatcgattc ggctgccagc
     1321 gcacttctgt ggcatcgccg gattgaagcc gaccacgggg cgcgtccctg tcgatgggca
     1381 tactcccgca gtgtctggct cgctgtcgct cggagtcagc attgggccaa tggcgcgaag
     1441 cgttgccgac ctggcgttga tgttcagcgt catcgccgat gacgcgccat tggaaattaa
     1501 cggtgaacaa ggcgtgaatc tacgaggttt gcgcgcggct tggtatgtga gtgacggcgt
     1561 ggcgtcggtc gatgaggaaa ccgcgcgagc ggttgagcgt gcagcgaatg tcttgcgcga
     1621 tgcgggcgtc gaagtcgatc aagtcaagcc tcccggtgtc tcgcaggggc tcggcctatg
     1681 gctcgagttg ttctctcgct ccgtctcaag acagttgttt gagttatacc gcgggcggga
     1741 agatgaggcg ggtccacaag tagcagcgat gctcgctcga atcagtgaag aagatgcgaa
     1801 catggcaggg aaggtggccg tggctgagcg actcgcgaag gcggtagtcg agcgcgagag
     1861 attgagggag gaactccttc gatggatgaa gacaacaccg ctaatcatcg ctccggtcgg
     1921 cgcgacgtgc gcctggccgc acggcacgca gcgagtgagc gttcgcggtg aatcgatcag
     1981 cgtgtttcgc gcgttcagtt attcgcagac tttcaacgtg ttcggattgc cgtgcgttgc
     2041 gattcccgcg ggacggtcgc gcgaaggatt gcccatcggg attcaaatta tcggtcttcc
     2101 ggcagaagaa agaaccgtgt tagcggccgc gcaaatcatc gaacaagcac tcggcggttg
     2161 gcagcttgtc cgacaggctt aggtccaata gtttagaagc ggactactgc ccgcttagtc
     2221 gggcgttaga ccgactctaa acagatgtgc aagagttttc gaaagaaagt ttgtcgaaca
     2281 gggtcgcttt cgttatagtt gcacgccaac aagacctgta tttgagccag tcggaggtga
     2341 cgcgatgaca tttgcaagct tgatctttct gcaaggtgaa ggtggcgtgc tgccgctggc
     2401 tgtgcttttg tttctgcttg gttttctcgg catcttcctg ctgatcatcg ccgtgaagac
     2461 gatcaggatc gtgccacagg caagtgtgat gttgattgag cggctcggac gcttcaaccg
     2521 cgtggcagcg agcggcctaa aca
//
LOCUS       DASZZE010000348         6599 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_58039, whole genome shotgun sequence.
ACCESSION   DASZZE010000348 DASZZE010000000
VERSION     DASZZE010000348.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6599)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6599)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6599
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58039"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..329)
                     /locus_tag="VHD88_06695"
     CDS             complement(<1..329)
                     /locus_tag="VHD88_06695"
                     /inference="COORDINATES: protein motif:HMM:NF014658.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MqnA/MqnD/SBP family protein"
                     /protein_id="HVS21517.1"
                     /translation="MTETTKQTISVAHSPDSDDAFMFYALATNKIETGEIEFEHTLQD
                     IQTLNEEARKGTYDVTAISFHAYAYVADKYALLPHGASIGDNYGPVVVANEELDPSDL
                     SKVKIAIP"
     gene            complement(394..1521)
                     /gene="mqnE"
                     /locus_tag="VHD88_06700"
     CDS             complement(394..1521)
                     /gene="mqnE"
                     /locus_tag="VHD88_06700"
                     /inference="COORDINATES: protein motif:HMM:TIGR03700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminofutalosine synthase MqnE"
                     /protein_id="HVS21518.1"
                     /translation="MLTSFMNSSYDPQLNEIASKVEAGVRLSFEDGVALFATNDLNAL
                     GKLADKVRRGMHGRTTYFNVNRHFNPTNVCYVDCKFCGFYRTPRQPDAYTHNIDDSLR
                     IAGQAVSEGATELHITGGLNTKLPFSYFTDLLSSLKKQYPQLHLKAFTMVELDHFAHF
                     YKMPDEAMIQQLIDAGLDSCPGGGAEIFREPTRSMICAHKCDASRWLELAGKVHAAGL
                     KTNATMLYGHIESIEDRVDHLVRLREQQDKSGGFQCFIPLAFYPPETQLAHLPGPSGV
                     DSLKTMAVSRLMLDNFAHIKAYWVMLGKRLAQVALHFGANDVDGTITEGGELTESYSI
                     ETNNEVKMTRPELVGLIEEAGFEAVERDTVYNRVERATTVA"
     gene            complement(1527..1835)
                     /locus_tag="VHD88_06705"
     CDS             complement(1527..1835)
                     /locus_tag="VHD88_06705"
                     /inference="COORDINATES: protein motif:HMM:NF017496.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Uma2 family endonuclease"
                     /protein_id="HVS21519.1"
                     /translation="MSWVRNQRWNALSAEEQEKFPPLCPDFVVELRSRTDALKDLQEK
                     MEEYLVNGAQLGWLVDPLERKVHIYRADSGPEILDDPQTVSGEPLLKEFVLDVQSLWD
                     "
     gene            complement(1792..2130)
                     /locus_tag="VHD88_06710"
     CDS             complement(1792..2130)
                     /locus_tag="VHD88_06710"
                     /inference="COORDINATES: protein motif:HMM:NF017496.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Uma2 family endonuclease"
                     /protein_id="HVS21520.1"
                     /translation="MSTTIALTNGLVVDFSPLAAKVSDEEFDELCRLNPELQLERTSQ
                     GELVIMAPTGGKTGRRNAKLIARVINWAEQNGTGQVFDSSTVFLTTKRRETFTRRVMG
                     TKPAMECAQR"
     gene            complement(2158..3027)
                     /locus_tag="VHD88_06715"
     CDS             complement(2158..3027)
                     /locus_tag="VHD88_06715"
                     /inference="COORDINATES: protein motif:HMM:TIGR01475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008412 - 4-hydroxybenzoate
                     octaprenyltransferase activity [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiA-like polyprenyltransferase"
                     /protein_id="HVS21521.1"
                     /translation="MATVVHNIRTTLEMIKIEHTLFALPFALLGAVLAARGIPNVSQI
                     LWITLAMVGARSTAMAFNRIADKDYDARNPRTKMRAIPAGKLSVPFVLIFTVVGAGMF
                     LFAAAMLNRLTLILSPIALASVVLYSYTKRWTTLSHIVLGWCLAIAPTGAWIAVRGTI
                     DSPAPLLLSLVVLLWTAGFDVLYACQDYDFDRREGLYSIPARLGIARALWISRGLHVG
                     AFAALVALYFVTNLGLLAVVGVIATGALLIYQHTLVRANDLSRLNAAFFTTNAFVSII
                     LLATFGGARLLRR"
     gene            complement(3067..3666)
                     /locus_tag="VHD88_06720"
     CDS             complement(3067..3666)
                     /locus_tag="VHD88_06720"
                     /EC_number="2.5.1.129"
                     /inference="COORDINATES: protein motif:HMM:NF004685.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0106141 - flavin prenyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavin prenyltransferase UbiX"
                     /protein_id="HVS21522.1"
                     /translation="MELTVGITGASGSIYAHRTLVQLAASGAVERINLIASDAAKSVA
                     MVELGFDLRAADEKTINEWIGLPADAKMIRLHRLDNMAATPSSGSHPQAGMIIVPCSM
                     GTLGAIASGAGSNLIHRAADVTLKEGRRLVLVPRESPYNAIHLENMLKLAHAGAQILP
                     ASPGFYHRPQTIDALVDHLVFRILDQFTIPHSTATRWKG"
     gene            3770..4867
                     /gene="tilS"
                     /locus_tag="VHD88_06725"
     CDS             3770..4867
                     /gene="tilS"
                     /locus_tag="VHD88_06725"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: protein motif:HMM:TIGR02432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016879 - ligase activity, forming
                     carbon-nitrogen bonds [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HVS21523.1"
                     /translation="MKRQQQRQRAHKTKRPSRVCARRSDFAQALCREWKKLKLSATNA
                     NVVVAVSGGADSVALLLSLDELVKSGRLKLKLFVAHLDHGLRKNASKADARWVSALAK
                     QLGHAFVGGRVDVAKRAARAGDNLEQAARRARYEFLADVAMKKRAGIIVTAHTMDDQA
                     ETVLMNLLRGSGTDGLGGMEPTRRLNQRSKTILARPLLSWARRRDTESYSRSRGVEFR
                     HDEMNADEKFNRVRVRRQLLPLMESFNPKIVEGLMRTAEVLREDSVALNGGAARLLEL
                     ASEDDKRGVSRNKKEPLLQLDLLAAAPPALRRRALRQWLAKCRGDLKRVERVHVLAVE
                     SLLFGNRGGRVIELPGGSKISRTRGFLNYHG"
     gene            5093..>6599
                     /gene="ftsH"
                     /locus_tag="VHD88_06730"
     CDS             5093..>6599
                     /gene="ftsH"
                     /locus_tag="VHD88_06730"
                     /inference="COORDINATES: protein motif:HMM:TIGR01241.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HVS21524.1"
                     /translation="MSSTARQIIFWLLIIAGALLIYKLVNPGGKNTQQLSITQLTDKI
                     KSGQIAKMTFKQTEVVSTGEDKQEYRTSLSNEKYKADLMALASEKREGTDKNKAEAEE
                     EPSSSIWWPALGYLLPFVLILGFWVFMLRQMQSGGNKALSFGKSRAKLLSNQQKRVTF
                     KDVAGVEEAKEELQEIIEFLKEPQKFQKLGGRIPKGVLMMGPPGTGKTLLARAIAGEA
                     NVPFFSISGSDFVEMFVGVGASRVRDLFEQGKKNAPCIIFIDEIDAVGRHRGAGLGGG
                     HDEREQTLNQLLVEMDGFESNDGVILIASTNRPDVLDPALLRPGRFDRRVVVSRPDVR
                     GREGILKVHTRKIPLGEDVDISVMARGTPGFTGADLANLVNEAALNAARYNKKVVAMY
                     DFELAKDKVLMGAERKSMVISNEEKRVTAYHEAGHTLVGLKVPNADPVHKVTIIPRGM
                     ALGVTQQLPEGDRHNYTKEYLLGQISILMGGRIAEETFMGNITTGASNDIEK"
BASE COUNT         1531 a         1776 c         1889 g         1403 t
ORIGIN      
        1 ggaatggcga tcttcacttt tgataagtca gacggatcaa gctcttcgtt ggcgacgact
       61 accggaccgt agttgtctcc aatcgaagcg ccgtgcggca gcagcgcata cttgtccgca
      121 acatacgcgt aggcgtgaaa gctgatcgcg gtgacgtcgt acgtgccttt gcgcgcttct
      181 tcattcagcg tctgaatgtc ttgaagggtg tgctcaaatt caatctcgcc cgtctcgatc
      241 ttgttcgtcg ccagcgcgta gaacataaaa gcgtcgtcgg aatcaggcga gtgagcaacc
      301 gatattgttt gttttgttgt ctctgtcata tctcaaacac aaaaatgcag cggtatggcg
      361 ggagcagata accgctgatt ggttaactct gatttacgcg accgtagtcg ccctttctac
      421 ccgattgtag accgtgtctc gctcgacagc ctcaaagccg gcttcttcga tcaagccgac
      481 aagttccggc cgcgtcatct tcacttcgtt gttggtttca atcgaataac tctccgtcaa
      541 ctcaccgcct tcagtgatcg tgccgtcaac atcgttcgcg ccaaagtgca gagctacttg
      601 cgcgaggcgc ttgccgagca tgacccaata cgctttgatg tgcgcaaagt tgtcgagcat
      661 taagcgcgac acggccatcg tcttcagcga gtcaacgccc gaaggccccg gcagatgcgc
      721 aagctgtgtc tcgggcggat aaaacgcgag cggaatgaaa cactgaaagc cgccggattt
      781 gtcctgctgc tcgcgcagac gcaccaagtg atcgacgcgg tcttcgatcg attcaatgtg
      841 gccgtagagc atcgtggcgt ttgttttcaa acccgccgcg tgaaccttgc cggcgagttc
      901 aagccagcgg gaagcgtcgc acttgtgcgc gcaaatcatc gagcgcgtcg gttcgcgaaa
      961 aatctcagcg ccaccaccgg gacacgaatc caaaccggcg tcgatcaact gctgaatcat
     1021 tgcttcgtcc ggcatcttgt agaaatgcgc gaagtgatcc agctcaacca tcgtgaacgc
     1081 cttcagatga agctgtggat attgcttctt caaagatgaa agcagatcag tgaagtagct
     1141 aaacggcagc tttgtgttca agccgccagt tatgtgaagt tcagtcgcgc cttccgacac
     1201 cgcctgtccg gcaatgcgca gagaatcgtc gatattgtgc gtgtaagcgt caggctggcg
     1261 cggtgttcgg tagaacccgc agaacttgca atcgacgtag cagacgttcg tcggattaaa
     1321 gtgccgattg acgttgaaat aagtcgtgcg gccgtgcatc cctcgccgca ctttgtcggc
     1381 gagcttgccc agcgcattga gatcgtttgt cgcgaaaagc gcgactccat cttcgaaaga
     1441 aagccgcacg cccgcctcca ccttgctggc aatttcattc aattgtgggt cgtatgaaga
     1501 attcataaac gaagtcagca ttgcagctag tcccaaagcg actgaacatc caggacaaat
     1561 tctttcaaca aaggttcgcc ggaaaccgtc tgcggatcgt ccagaatctc ggggccagag
     1621 tcagcgcggt agatatgaac tttgcgttcc aaaggatcga ccagccagcc aagttgcgcg
     1681 ccattgacga gatactcttc catcttttct tgcaagtcct tcagcgcatc ggttcttgat
     1741 ctaagttcga ccacgaagtc cgggcacagt ggcggaaact tctcctgctc ctcagcgctg
     1801 agcgcattcc atcgctggtt tcgtacccat gacacgtctg gtgaacgtct cgcgccgttt
     1861 ggtagtgaga aacactgttg atgaatcaaa cacttggcct gttccgttct gttcggccca
     1921 gttgataacc cgtgcaatca gtttcgcgtt tcgtcgtcca gtctttccac cagtgggagc
     1981 catgatgacc agttctcctt ggcttgtgcg ttcgagttgg agttctggat tgaggcggca
     2041 aagttcgtca aattcttcat ccgagacctt cgccgccagc ggactgaagt ccaccacaag
     2101 accattggta agtgcgattg tcgtgctcat ttgcttctcg gtcgctttgg aggaaatcta
     2161 cctacgtaat agtcttgcac cgccaaaggt tgctaacaaa ataatactca caaatgcatt
     2221 ggtcgtaaaa aacgcggcgt tcagtctgct cagatcattg gcgcgcacca gtgtgtgctg
     2281 ataaatcagc aaagcgcccg tggcgatcac gccgacgacc gcgagcaatc ccaggttcgt
     2341 tacaaagtat agcgcaacca gcgctgcgaa tgctcccacg tgcagcccgc gcgagatcca
     2401 aagcgcgcgc gcgatgccaa gccgtgcggg aattgaatac aaaccttcgc ggcgatcgaa
     2461 atcgtaatcc tggcaagcgt aaagcacgtc aaagcctgcg gtccaaagca gtacgaccag
     2521 cgagagcagc agcggtgctg gactgtcgat cgtgccacgc acggcaatcc atgcccctgt
     2581 cggcgcgata gccagacacc agccgagcac gatgtgcgac agcgtcgtcc agcgcttggt
     2641 gtatgagtaa agcacgacgc tggctaaagc gatcggcgaa aggatcagcg tcaggcggtt
     2701 gagcatagcc gcagcgaaca aaaacatacc cgcgccaaca accgtgaata tcaacacaaa
     2761 aggaacggag agcttacctg cgggaatcgc gcgcattttt gtgcgtggat tgcgtgcgtc
     2821 gtagtctttg tcggcgatgc gattgaatgc catcgcggtg ctgcgcgctc ccaccatcgc
     2881 tagagtgatc cacagaatct gcgacacgtt cggaatgcca cgcgccgcca gcaccgcgcc
     2941 cagcagcgca aatggcaacg cgaacagcgt gtgctcgatc ttgatcatct cgagcgtcgt
     3001 gcgaatgttg tggactacgg tcgccatgaa ttcaaaattc agaattcaga attcaaaact
     3061 gcattactag cctttccacc ttgtcgccgt cgagtgcgga atcgtgaact gatcgagaat
     3121 gcgaaaaacc agatgatcca ccaaagcgtc aatcgtctgg ggacgatgat aaaagccggg
     3181 gctcgccgga agaatttgcg cgccggcgtg cgccagcttc aacatattct ccaggtgaat
     3241 cgcattgtaa ggcgattcgc gcggcaccag caccagcctg cgaccttctt tcaacgtcac
     3301 atcagcagcg cgatgaatca agttgctgcc tgcgccggaa gcgatcgcgc cgagcgtccc
     3361 catagaacat ggaacgatga tcatgccggc ttgcggatgc gagcccgacg aaggcgttgc
     3421 cgccatgtta tcgagccgat gcaaacgaat catctttgcg tctgccggca atccaatcca
     3481 ctcgttgatt gtcttctcat ccgcggcgcg cagatcgaaa cccaactcaa ccatggcaac
     3541 cgacttcgcc gcgtccgaag ctattaagtt gatacgctca accgcgccgc tggccgccag
     3601 ttgaaccaac gtgcgatgcg cgtagattga gcctgaggct ccggtgatcc cgactgttag
     3661 ttccatgctt tccgcgatct tacgttcgct tcaggatgat ggcaaggacg ctgtcctcgc
     3721 agacgaatat ataattcgag taggagcttc gatgctaaaa taactcggaa tgaagagaca
     3781 gcagcagcgt cagcgcgcgc acaagacgaa gcgcccatcg cgagtttgcg cccgacggag
     3841 cgatttcgcg caggcgctct gccgcgaatg gaaaaaactt aagctgtcgg caacgaacgc
     3901 gaatgtcgtg gttgctgttt caggcggcgc ggattcagtc gcactgttgc tttcgctcga
     3961 cgaattggtc aaatcgggga gattgaaact caaactgttt gtcgcgcatc tcgatcacgg
     4021 attgcgaaag aacgcgagca aggcggacgc tcgctgggtg tcggcgctgg caaagcaact
     4081 cggccatgct ttcgtcggcg ggcgtgttga cgttgccaaa cgggcggcga gagccggcga
     4141 caacctcgaa caggccgcgc gtcgcgcgcg ttacgaattt ctggcggatg tcgcgatgaa
     4201 aaaaagagcc ggcattatcg tgactgcgca cacgatggac gatcaagctg agacggtttt
     4261 gatgaatctc ttgcgtggta gcgggaccga cgggctcggc gggatggagc cgacacgacg
     4321 gcttaatcaa agaagtaaaa cgatcttggc gcgtccgctg ctttcgtggg ctcgacggcg
     4381 agacacagaa agctacagcc ggtcgcgagg cgttgaattt cgccatgacg aaatgaatgc
     4441 tgacgagaag ttcaaccgcg tgcgcgtgcg ccggcaactg ctgccgctga tggaaagttt
     4501 caatcccaag attgtcgaag gactgatgcg gaccgcggaa gtcttgcgtg aagatagcgt
     4561 cgctttgaat ggcggcgcgg cgcgtctgct tgaactcgca agcgaagatg acaagagagg
     4621 tgtaagccgg aacaaaaaag agccgctgct tcaattggat ttgctggccg cggcgcctcc
     4681 ggctttgcgc cgccgcgcat tgcgccaatg gctcgcgaag tgtcgaggcg acctgaaaag
     4741 agttgagcgt gtgcatgttc tcgctgtcga gagtctgctg tttgggaatc gcggcgggcg
     4801 cgtcatcgag ttgcccggtg gctcgaagat ttcgcgaacg cgcggatttc tgaactatca
     4861 cggttgattc aagtctcgcg cgtcgttggc agaacctcgc gcggacaaat cgcgtaatat
     4921 cgtggacgcc gcgagcaagg cacctgaacc caggctgcga gcatctgacg aagcgattgt
     4981 gcaggcttta gaaatccgaa gtcgcgggcg ccgaagggat tgtcctcggc tcttttcaag
     5041 cgacaaaaac ggccgatttg aggtatgatc ggctacggag gcagggaaga ctttgagttc
     5101 gactgcaaga caaatcattt tttggttgct aatcattgcc ggcgcgcttt tgatctataa
     5161 gctggtcaat cccggtggca agaacacgca acaactttcg attacgcagc tcactgataa
     5221 gatcaagagc ggccaaatcg ccaagatgac ctttaagcag accgaggtcg tgtcaactgg
     5281 cgaggacaaa caggaatacc ggacaagcct ttctaacgag aagtacaagg ctgatttgat
     5341 ggcgcttgca tctgagaaga gggaaggcac cgataagaat aaggccgaag ccgaagaaga
     5401 gccaagctca agtatttggt ggccggcgct gggttacttg ctgccgtttg ttttgatcct
     5461 gggcttctgg gttttcatgc tgaggcagat gcagtcgggc ggcaacaaag cgctgtcgtt
     5521 tggtaagtcg cgcgcaaagc tgctcagcaa tcagcagaag agagttactt tcaaagacgt
     5581 tgccggcgtt gaagaagcga aggaagaact ccaggagatc atcgaattcc tgaaagagcc
     5641 acagaagttt cagaagctcg gcggccgcat tcccaaaggc gttttgatga tgggcccgcc
     5701 gggaaccggc aagactttgc tggcgcgagc gattgccggc gaagcgaacg tgccgttctt
     5761 ttcgatttcg ggatcggact tcgtcgagat gtttgtcggc gtcggcgcgt cacgcgttcg
     5821 cgacctgttt gagcagggca agaagaacgc gccctgcatt atcttcatcg acgagattga
     5881 cgcggtcggt cgccatcgcg gcgccggtct cggcggcgga cacgacgagc gcgagcaaac
     5941 gctgaatcag ttgctcgtcg aaatggatgg ctttgaatcg aacgacggcg tgattctgat
     6001 cgcttcgacg aatcgtcccg acgttttgga tccggctctg cttcgacccg gacgttttga
     6061 tcggcgtgtc gtcgtatctc ggcctgacgt gcgtggtcgc gaaggcattc tgaaagttca
     6121 cacgcgcaag attccgctgg gcgaagacgt tgacattagc gtcatggcgc gcggcacgcc
     6181 tggattcacc ggcgcggacc tagcgaacct cgtcaacgaa gcggcactca acgcggcgcg
     6241 ctacaacaag aaagttgtgg caatgtatga cttcgagttg gccaaggata aggtcctgat
     6301 gggcgccgag cgcaagagca tggtcatctc gaacgaagag aagcgcgtca ccgcctatca
     6361 cgaagcgggg cacacgcttg ttggtttgaa agttccgaac gccgatccag tgcacaaggt
     6421 cacgatcatt ccgcgcggca tggcgctggg cgtgacgcag caactgccgg aaggcgatcg
     6481 ccacaactac acaaaggaat atttgcttgg tcagatttcg attctgatgg gcggacgcat
     6541 cgcggaagaa actttcatgg gcaacatcac cacgggcgcg tcgaatgaca tcgagaaag
//
LOCUS       DASZZE010000349         2640 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_42927, whole genome shotgun sequence.
ACCESSION   DASZZE010000349 DASZZE010000000
VERSION     DASZZE010000349.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2640)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2640)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2640
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42927"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            11..1765
                     /locus_tag="VHD88_06735"
     CDS             11..1765
                     /locus_tag="VHD88_06735"
                     /inference="COORDINATES: protein motif:HMM:TIGR00148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiD family decarboxylase"
                     /protein_id="HVS21525.1"
                     /translation="MHRNLRSFLDLLRRENDLVTIDAEVDPYLEAAEIHRRVIERGGP
                     ALLFTRVKGSGFPVVTNLFGTQKRIELAFGRKPEQFVKELVGVAEALLPPNRSELWKH
                     RSLVREFFKLGTRTVARAPVTEVVEEAARLDELPVLTTWHEDGGPFITLPLVYTEHPT
                     TKKHNLGIYRMQVYDAQSAGLHWQIQKGGGFHYHAAEELNQPLTVTVFLGGPPALIIS
                     AIAPLPEDVPELILASLLGGEKLRMAKNPIVGGHRLVAEAEFALVGHASPHERKPEGP
                     FGDHYGYYSLKHDYPVFHCEAIAHRRDAIYPATVVGKPKQEDFFIGDYLQSLLSPLFP
                     LVMPSVRDLWTYGETGFHSLAAAVVRERYTREALVAGFRILGEGQLALTKFLILTDAL
                     IDLHDFRGVLEHVLARVRWETDFFIFANTSMDTLDYTSGKVNEGSKAILMGLGESVRD
                     LPPEFRGELPNGVTRAEVFCGGCLVVEGVSYFEEPQQAARIAREAAFAEWPLVVLHDD
                     ASVARSTTDFLWATWTRFEPAGDIYAAETNVVRHHLAYTGPIVIDARKKPTLPDELVV
                     RDDIAKLVDRRWREYFPQ"
     gene            1917..2501
                     /locus_tag="VHD88_06740"
     CDS             1917..2501
                     /locus_tag="VHD88_06740"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HVS21526.1"
                     /translation="MTLTRSRKRILTIAAVLLVTILSCAVWGFFIEPNRLVVHEETIQ
                     IDNWPKELGGLRIALIADIHPGAPFINDKKVREIVERTNQLNPDLIVLLGDYMSPNSW
                     PSHRVEPEITAAVLKDLHAPLGVYAVLGNHDWWYNGVKVRRAFEANGIPVLEDEVAEI
                     KWRNGSFWLSGLRIYGPARNMSPRRLRRFRRVQP"
BASE COUNT          554 a          739 c          765 g          582 t
ORIGIN      
        1 gaaatcctaa atgcaccgca accttcgttc cttcctcgac ctcctgcgcc gcgaaaacga
       61 tctcgtcacc atcgatgccg aagtcgatcc ctatctcgaa gccgccgaga ttcatcgtcg
      121 cgtgatcgag cgcggcgggc cggcgctgct cttcacgaga gtgaaaggca gcggctttcc
      181 cgtcgtcact aacctgttcg gcacacagaa aagaatcgag cttgcctttg gccgcaaacc
      241 tgaacagttc gtcaaagagt tggtgggcgt tgctgaagcg ctgctgcctc cgaatcgttc
      301 cgagctttgg aagcatcgat ctttagttcg agagtttttc aagctcggaa cgcgaactgt
      361 cgcgcgcgcg ccggtaaccg aagttgtcga agaagcggcg cgcctcgacg aactaccggt
      421 gctcacgacc tggcacgaag acggcggacc attcatcacg ctcccgctgg tttatacaga
      481 acacccgacc acaaagaagc acaacctcgg catctatcgc atgcaggttt acgatgcgca
      541 gagcgccgga ttgcattggc agattcagaa aggcggaggt tttcactatc acgctgcgga
      601 agagttgaac cagccgctga cggtgacggt ctttctgggt ggaccgccgg cgctgatcat
      661 ttccgcgata gcgccgctgc ctgaagatgt gcccgaatta atccttgcgt cattgctcgg
      721 cggagaaaaa ctcagaatgg cgaagaaccc gattgtcggt ggacatcgtc tggttgcgga
      781 agctgagttt gcgctggttg gccacgcgtc gccgcatgag cgaaaaccgg aaggcccatt
      841 cggcgatcat tacggctact attcgctgaa gcatgactat ccggtctttc attgcgaagc
      901 gatcgcgcat cgccgcgatg caatctatcc cgcaacggtc gttggcaaac caaagcagga
      961 agattttttc atcggcgact acttgcagtc gctcctgtcg ccgttgtttc cgctggtgat
     1021 gccgagcgtg cgcgatcttt ggacgtacgg cgagactgga ttccattcgc tagctgcggc
     1081 ggtagtgcgc gaacgctaca cgcgcgaagc actcgtcgcg ggatttcgca tcctgggtga
     1141 aggacagttg gcgttaacga agttcctgat actaactgac gcgcttatcg accttcatga
     1201 ttttcgtggc gtgctggaac acgtgctggc gcgcgtgcgt tgggagacag acttcttcat
     1261 cttcgcgaac acgtcgatgg acacgctcga ttacacgagc gggaaagtga acgaaggcag
     1321 caaagcgatc ctgatgggtc tcggcgagtc agtgcgcgac ttgccacccg agtttcgcgg
     1381 cgaattgccg aacggagtca cgcgcgcgga agttttctgt ggcggctgtc tggttgtcga
     1441 aggcgtttcg tactttgaag aacctcagca agccgcgcgt attgctcgtg aagcagcatt
     1501 cgctgaatgg ccgctggttg tattgcatga tgacgcgagc gttgctcgtt cgacgacgga
     1561 tttcctttgg gcgacgtgga cgcgtttcga acctgcgggc gacatctacg ccgccgaaac
     1621 gaacgtcgtt cgccatcatc tcgcgtatac cggcccgatt gttattgacg cgcgcaagaa
     1681 gccaacgctt cctgacgagt tagtcgtgcg cgacgacatt gcgaagctgg tcgaccggcg
     1741 ctggcgtgaa tattttccac agtagctccc ttgagtcgtt gtcaatggaa ttgtcaaccg
     1801 cagaggaagc agaggaattc gcagaggaac gcgaagtcgg ttttctctgc ggcctctgcg
     1861 caaaactccg cgccctctgc gtttaagaat gatttgcttt gtccgcatga tcaccgatga
     1921 ctttaacgcg aagcaggaaa cgaatcctca cgatcgccgc ggttttgctt gtcacgatct
     1981 tgtcttgcgc tgtctgggga ttctttattg agcccaatcg cctcgtcgtc catgaagaga
     2041 ccatccaaat cgacaattgg ccgaaagaac tcggtggctt acgcatcgcc ctgatcgcgg
     2101 acattcaccc aggcgcgcca ttcatcaacg ataagaaggt gcgggagatc gtcgaacgca
     2161 cgaatcaact caatcccgat ctgatcgtgc tgctgggcga ttacatgtcg ccgaacagtt
     2221 ggcccagtca tcgtgtcgaa ccggaaatca cggcagcagt attgaaggat ctgcacgcgc
     2281 cgctcggcgt ttacgcagtg cttggcaatc acgattggtg gtacaacggc gtgaaggtgc
     2341 gtcgcgcttt cgaagcgaat ggcattcccg ttttggaaga tgaggttgcg gaaatcaagt
     2401 ggcgaaacgg atcgttctgg ctgtcgggct tgcggatcta tggacccgcc cgcaacatgt
     2461 caccgagacg gttgcgaagg ttccgccggg tgcaaccgta attgcgttga ctcacaatcc
     2521 ggacatcttt ccacgcgtgc cacagagcgt gccgctgctg ctcgccgccc acacgcacgg
     2581 cgggcaggtg aaccttccgc tgattggcac gcccatcgtg ccgtcgcgct tcgggcaaaa
//
LOCUS       DASZZE010000350         1525 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_109346, whole genome shotgun sequence.
ACCESSION   DASZZE010000350 DASZZE010000000
VERSION     DASZZE010000350.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1525)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1525)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1525
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109346"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            306..1070
                     /locus_tag="VHD88_06745"
     CDS             306..1070
                     /locus_tag="VHD88_06745"
                     /inference="COORDINATES: protein motif:HMM:NF019445.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LecA/PA-IL family lectin"
                     /protein_id="HVS21527.1"
                     /translation="MKRFFFRPLLVVVLALGVSLPALADTIRLKDGSVLHGQVVGFKD
                     QQFTILLGGGARGRKSRITVYMEDVESIEFDSTGGANMSGPSENTSNTSQPTYQPPTN
                     SQPTNTQPSYTPPAPNTSNSGGPGTSFQINVRVRGDNASNGWTNSGLVVRRGQRLRIT
                     ASGRVSLGNNRSSTPDGLPNVPDRDKLMRNQPTGGLIAVIGDDNDDFIFIGGKHDFVA
                     TRDGVLFLGVNEGNLSDNSGNYDVVIEAEAVGGNPR"
BASE COUNT          319 a          449 c          439 g          318 t
ORIGIN      
        1 ccgcggccct caatcccacc ggctcgtcct cgaactaaat cccaacggcg cgcgaagctc
       61 atcttcattt atgccgcatg cgatgcggat tgtggtaaac tttccgtcga tagtttgact
      121 gaagctaaat ggggtttgct cacgcaagca aaaggttgtc cttctcccct cacgcagccg
      181 tctctactgt tcgcaacctt tccgcggttt acggcatcaa tcgggaacga cagattgctc
      241 tctcgaacgc acgcgcgtgc ttgctaaaac atctatccaa attttcgcgt ctatcggagg
      301 tcgccatgaa aagatttttc tttcgtccgc tgctggtagt tgtcctggct ctcggagtta
      361 gtctgccggc gttggcggac acgattcgtc tgaaggacgg cagcgtgctt cacggccaag
      421 tcgtcggctt caaggatcag cagttcacga ttcttctcgg cggtggcgcg cgcggtcgca
      481 agagccgcat cacggtttat atggaagacg ttgagtcgat cgaatttgat tcgacgggcg
      541 gcgcgaacat gtccgggccg agcgaaaaca ccagcaacac atcgcagcca acttatcagc
      601 cgccgacgaa tagtcagccg acaaacacgc agccgagcta caccccgccg gcgccgaaca
      661 catcgaactc gggaggtccc ggaacgtcct ttcagatcaa tgtgcgcgtg cgcggtgaca
      721 acgccagcaa tggctggacg aacagcggtt tggttgtgcg gcgcggtcag cggctgcgca
      781 tcactgcttc gggcagagtt tcgctgggca acaatcgctc ctcgacgccg gatggtctgc
      841 cgaatgtgcc ggaccgcgac aagctgatgc gcaatcagcc gacgggtgga ttgatcgccg
      901 tgatcgggga cgacaacgac gacttcatct tcattggagg caaacacgac tttgtggcga
      961 cgcgcgacgg cgttttgttt ctgggcgtca acgaaggaaa cctgagcgac aactcgggga
     1021 actacgacgt ggtgattgag gctgaagccg tcggcggtaa tccgcgttaa ggtgggtcgt
     1081 caaatttgga gtgcggtggc aagcgcagcg cgacaccgct ttggattggg gcactgatgc
     1141 ttgatgcctg gcgcggacat gtcaaaagcg ccgtcgccgc ttcgctctgc cggcgcactc
     1201 catagtctta ccgactgaag tctctgccgc cacttatagg aaactcgccc gcacaacctc
     1261 gcatcagaac gacaggctgc ctgactccaa cagcttgacc gcgctcgcgc gagcgccata
     1321 tagtcgcttc ggacaagctg aatcggcccg cctcaaaaat tcggtaaagg atcgccgcaa
     1381 tggaaagcaa tactattcgc cgcctgctct ttgttttagg catcgccgcc acatttgtgt
     1441 ttggcgccac cgggtcgggt tccgtgttcg cgcaggcgcg ccgtcaaccg ccgacttcgg
     1501 atcagaagaa gaacaagcga cccgg
//
LOCUS       DASZZE010000351         3359 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_193193, whole genome shotgun sequence.
ACCESSION   DASZZE010000351 DASZZE010000000
VERSION     DASZZE010000351.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3359)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3359)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3359
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_193193"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..281)
                     /locus_tag="VHD88_06750"
     CDS             complement(<1..281)
                     /locus_tag="VHD88_06750"
                     /inference="COORDINATES: protein motif:HMM:NF012336.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21528.1"
                     /translation="MNSMKPVYLAAAVRTPIGRFGGSLATLTAADLGTAVARESLRRA
                     NVRPDQIDDSIWGCARQAGGGPNVARQITFRAGVPETVPAFTVNQACGSG"
     gene            361..1899
                     /locus_tag="VHD88_06755"
     CDS             361..1899
                     /locus_tag="VHD88_06755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21529.1"
                     /translation="MLQQLNDSVAIEGAERAIRELLNAHTEWFFAQVGGAPLALAKSE
                     FDFSIAHRRLIFSSWTETGSRSWRITAWEWTGEKLLLEASRRMGADVATLELVPRASA
                     KAIVASIAAARQSRCEKLAQVASEALSGAKVERAVLSPGMRRDQPGRYARIVLRRPHE
                     RIAATATVAQSDARNVDSLFSSALLWFNRLRQSPKRPFIERLLMIVEHQTLEAARQRH
                     VLLRDELRRAIELHEIDEEWQQLEPVRPFERKNLWRKRLTRFPPVTEAETTERAKEII
                     AYSPHAIDVVASRHGQTLRYHGLPFARLRRVLDRDRIWFGVEGSRRRLLDEYYREDWK
                     KLLLDLEAHRNANASDRRHWLYRAAGEAWLESILRRDVSKLDPGLIVAPLHAQFRTSH
                     GGPTGARPIDLLALRHDGRLAVIELKVNEDREHVFQGVDYWRRVEAHRRRGHISTAKL
                     FGEREISDESPLVYLVAPTLRFHRSFAALAKTIAPDIEIYRFDINEDWRAGVRVVRRE
                     RVNA"
     gene            complement(1909..>3359)
                     /locus_tag="VHD88_06760"
     CDS             complement(1909..>3359)
                     /locus_tag="VHD88_06760"
                     /inference="COORDINATES: protein motif:HMM:NF012321.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HVS21530.1"
                     /translation="RRLRRTYRGLTRDLDLIREHLRNRRPRIVDLPAALVPFELLFQI
                     TMLGSALDDAREFYRQIVSELETIVAEYLSNSTATVADTLMATSRVHSLFQSIALEDS
                     EQQVEVPDELDQEDASKLAQEMLAERDANRQPQRRDARELFNAWNTDAEGEFDELEGS
                     QAWSEGEMPEQDLEAGEVAFNYDEWDRELVDHRVGWCRVIEKKVKRGDRAFVEDTRER
                     YKGVVSSIRHQFQLMKPENLTRITNELDGEEFDLNAVVDFFIDRRADGQQSERIYTKR
                     LRRRRDVAVSFLLDQSSSTARTIGRHPLQPYTHPGRRIIEIEKEGLVLMSEALEAVGD
                     AYSINGFTSEGRRNVKFYVLKDFGEHYSDEVMRRIGGITYKNNTRLGAAIRHASAKLE
                     KQDARTRLLIVLSDGRPYDHDYGDARYAREDTREALRQAKTQGITPFCITIDRESEAE
                     LRDLYGEVGYTIIDDVMSLPERLPGIYRRLTT"
BASE COUNT          658 a          978 c         1000 g          723 t
ORIGIN      
        1 cccgagccgc acgcctgatt caccgtgaac gcgggaacag tttcaggcac gccggcgcga
       61 aatgtaatct gccgcgcgac gtttggcccg ccacctgctt gccgcgcgca cccccagatt
      121 gaatcgtcga tctgatcagg ccgcacgttt gcgcggcgca agctttccct tgcgaccgcc
      181 gttcccagat ccgcggccgt caaggtcgcc agcgatccgc cgaagcgtcc aatcggagtg
      241 cgcactgcag cggccagata gactggtttc atcgaattca tttactttcg aaaagcgtgt
      301 tctgctgtta agctcttgcg cgatcttgga tgttagcata acgcccgttg actcccgcaa
      361 atgctgcaac aactcaatga cagcgtggcg atagaaggcg ccgaacgcgc gattcgcgaa
      421 ctcctcaacg cgcataccga atggtttttc gcacaggttg gcggcgcgcc gctggctctc
      481 gcaaagagtg agtttgattt ttctatcgcg catcgtcggc tgattttttc aagctggact
      541 gagactggtt cacgttcgtg gcgcattacc gcgtgggagt ggaccggcga gaagcttctg
      601 ctggaggcca gccggcggat gggcgccgac gtggcgacgc tcgaactggt tccgcgtgcc
      661 tctgctaaag cgatcgtggc gagcatcgcc gccgcccgcc agtctcgttg cgaaaagctc
      721 gcgcaggttg cgagcgaagc tttgtcaggg gcgaaggtcg agcgagcggt cctgagtccc
      781 gggatgcgac gcgatcagcc gggccgttac gcgcgcatag tcttgcgtcg gccccacgaa
      841 cgcattgcgg ctaccgccac cgtcgcgcag agtgacgcgc gcaacgtcga ttcgttgttt
      901 tcatcagcgc tgctctggtt caaccgcttg cgccagagcc ccaagcgacc attcatcgaa
      961 aggctcttga tgatcgtcga gcatcagaca ctggaagcgg cgcgacagag acacgtgctt
     1021 ttgcgcgacg agctgcggcg ggcaatagag ttgcacgaga ttgacgaaga atggcagcag
     1081 cttgagccgg ttcgtccatt cgagagaaaa aatctttggc ggaagcgtct gacgcggttt
     1141 ccgccagtca cggaagccga gaccacggaa cgcgcgaagg aaatcatcgc ctactccccg
     1201 cacgcgatcg acgttgttgc ttctcgtcac ggccaaacgc ttcgttatca cggcctgccg
     1261 ttcgcgcgtt tgcggcgcgt gctggatcgc gatcgtatct ggttcggcgt tgaaggctcg
     1321 cgccggcgtt tgcttgacga atattaccgc gaagattgga agaaactgct gctcgatctc
     1381 gaagcgcatc gcaacgcgaa cgcgagcgat cggaggcact ggctttatcg cgcggccgga
     1441 gaagcctggc tggaatcaat tctgcggcgc gatgtttcca aactcgatcc cggattaatc
     1501 gtcgctcctc tgcatgcgca gtttcgcacc tcgcatggcg ggccgaccgg cgcgcgacca
     1561 atcgatttgc tggcgctgcg tcatgacgga cggctggcgg tgatcgaatt gaaggtcaac
     1621 gaagatcgcg agcacgtgtt tcagggcgtc gattactggc ggcgcgtcga agcgcatcgc
     1681 cgtcgcggcc acatcagcac agcaaaatta ttcggcgaac gcgagattag cgatgagtcg
     1741 ccgttggttt atctggtggc gcccacactt cgctttcatc gatcgttcgc ggctctggca
     1801 aagacgattg cgccggacat tgagatttat cgttttgata tcaacgaaga ctggcgcgct
     1861 ggcgtacgcg tggtgcgaag agagcgagtc aacgcgtgaa gtgtacgatc aggtagttag
     1921 ccgtcgataa attcccggca aacgctcggg caatgacatc acgtcgtcaa tgatcgtgta
     1981 accaacttcg ccgtaaagat cgcgcagttc tgcctccgat tcgcgatcga tggtgatgca
     2041 gaagggcgtg atgccctgtg ttttcgcctg gcgtaaagct tcgcgggtgt cttctcgggc
     2101 ataacgcgcg tcgccatagt cgtgatcgta agggcggccg tccgacaaaa cgatcagcaa
     2161 acgcgtgcgc gcatcctgtt tttccagctt ggcgctggcg tgccgaatgg cggcacccag
     2221 acgcgtgttg ttcttataag ttatgccgcc gatacgtcgc atcacttcgt ctgaatagtg
     2281 ttcgccgaaa tctttcagca cataaaactt cacattgcgc cgtccttcgg aagtgaagcc
     2341 gttaattgaa taggcatcac cgaccgcttc cagcgcttcg ctcatcaaga ccagcccttc
     2401 cttctcgatc tcgatgatcc gccggccggg atgcgtgtaa ggttgcagcg gatgacgacc
     2461 aatggtgcgc gcggtcgacg acgattgatc cagcagaaac gaaacagcga cgtcgcggcg
     2521 acgacgcagg cgcttggtgt agatgcgttc cgactgttgg ccatcggcgc gacgatcgat
     2581 gaagaaatcc accaccgcgt tcagatcaaa ctcttcgccg tcgagttcgt tcgtgatgcg
     2641 cgtcaagttt tccggcttca tcaactgaaa ctggtggcgg atcgaagaga cgacgccttt
     2701 gtatctttcg cgggtgtctt caacgaacgc acggtcgccg cgcttcacct tcttttcgat
     2761 aacgcggcac cagcctacgc gatgatccac gagttcgcgg tcccactcgt catagttgaa
     2821 ggcgacttcg ccggcttcca ggtcctgctc tggcatttcg ccttcgctcc aggcctggct
     2881 gccttcgagt tcgtcgaatt cgccttcggc gtcggtgttc caggcgttga agagttcgcg
     2941 cgcgtcgcgc cgctgcggtt ggcggttcgc gtcgcgctca gcgagcatct cttgcgccaa
     3001 cttgctcgcg tcctcctgat ccagttcatc cggcacttcg acctgctgct cggaatcttc
     3061 gagcgcgatt gattgaaaca gcgaatggac gcggctggtg gccatcaagg tatcagcgac
     3121 ggttgccgtt gaattcgata agtactcagc aacaatcgtt tcgagctcgg agactatctg
     3181 gcgataaaat tcgcgcgcgt cgtcaagcgc gctgccgagc atagtgattt gaaacagcag
     3241 ctcgaacggc acgagcgccg ccggaagatc gactatgcgt ggccggcgat tacgcagatg
     3301 ttcgcgaatc agatcgagat cgcgcgtcaa accgcgatag gtccgtcgca ggcgacgat
//
LOCUS       DASZZE010000352         1878 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_77709, whole genome shotgun sequence.
ACCESSION   DASZZE010000352 DASZZE010000000
VERSION     DASZZE010000352.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1878)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1878)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1878
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77709"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            129..1142
                     /locus_tag="VHD88_06765"
     CDS             129..1142
                     /locus_tag="VHD88_06765"
                     /inference="COORDINATES: protein motif:HMM:NF013720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyltransferase family protein"
                     /protein_id="HVS21531.1"
                     /translation="MSETIPSPDYAAVRDGGAGMIDLSARGRLLVSGSEAVQFLNGLI
                     TNDMNTLEVDHWMLAAFPNVQGRLLAAVRVIHRDDGFLIDTESATRDTVLKLLERFTL
                     AGDFRLADLTQATALLSIQGAKAPEIMAAIFGEMLANLGRDAVASVDWQREQITVIRA
                     THTAEDGFDLFVNATEAENLRDSFIKAGAQPVGSDALETLRIEAGIARYGVDMDETNV
                     VTETNLDDAVSFTKGCYIGQEIIARIKYRGHVAKKLTGIILESEANLKSGARILSSDD
                     KESGRVTSSAFSPRLNRTIALGYVKYDYLEPETSVKVVADDREIAGEVVALPFVRGSW
                     YSD"
     gene            1328..1600
                     /locus_tag="VHD88_06770"
     CDS             1328..1600
                     /locus_tag="VHD88_06770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21532.1"
                     /translation="MTDDQPNTEANAGDRYQTELAHSIIESLLDHTRVVSDLIAVMAQ
                     ALDQDTTKALTQTPTWQAYLESRRRMEHTREDIERFAELMKQVSAD"
     gene            complement(1597..>1878)
                     /locus_tag="VHD88_06775"
     CDS             complement(1597..>1878)
                     /locus_tag="VHD88_06775"
                     /inference="COORDINATES: protein motif:HMM:NF016300.4"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HVS21533.1"
                     /translation="ISFVLRQTSPARGQALADATQQAMNKARSIAQALGGHVARVVEE
                     NEGSTVSGELHYESSRLGYAMDMKKVPTPIAAGQLSIKSNVQLIVEIEN"
BASE COUNT          433 a          521 c          529 g          395 t
ORIGIN      
        1 aaagtcgtgg cgcggaccat tcgtagttac ctccgtttag aagcgggact tgtttcgcgg
       61 aactgggcgg acaagtccgc cccctaaacg aaattggttg agctttggca agcgcgaaca
      121 aatcctcgat gagcgaaaca attccatcac ccgattacgc cgccgtgcgc gatggcggcg
      181 cggggatgat cgatctctct gcgcgcgggc gtctgcttgt cagcggttct gaagctgtgc
      241 agtttctgaa cggcctgatc acgaatgaca tgaacacgct cgaagtggac cactggatgc
      301 tcgccgcgtt tccaaacgtg cagggccgtt tgctggccgc ggtgcgagtc attcatcggg
      361 atgatggatt cctgatcgac accgaaagtg ctacgcgcga tacggttctc aaactactgg
      421 agcgcttcac tttggccgga gattttcgtc tcgcggatct aacgcaagcc accgcgctgc
      481 tttcgattca aggagcgaag gcgcctgaga ttatggccgc gatattcggc gagatgctcg
      541 cgaaccttgg ccgggacgca gtggcaagcg ttgactggca acgcgaacag atcacggtca
      601 ttcgcgccac acacacggct gaagacggct tcgatttatt cgtcaacgcg acagaggcgg
      661 aaaacttgcg ggactcgttc atcaaagccg gcgcccagcc cgtcggttct gatgcgctgg
      721 aaaccttgcg catcgaagcc ggcatcgcgc gttacggcgt cgacatggac gaaacgaacg
      781 tggtgacgga gacgaacctt gacgatgcgg tgagcttcac gaaaggctgt tacattggcc
      841 aggagatcat cgcgcgcatc aagtatcgcg gccacgtcgc gaaaaaactc acggggatta
      901 ttcttgaaag cgaagcaaac ttgaagagcg gcgcgaggat tctttccagc gacgacaaag
      961 agagtggccg cgttacttca tctgcgtttt cgccgcgcct caaccgaacg atcgcgctgg
     1021 gttatgtgaa gtacgattac ctggagccgg aaacgagcgt gaaagtcgtc gcggatgata
     1081 gagaaatcgc cggtgaagtc gtggcgcttc cgttcgttcg cggcagttgg tattcggatt
     1141 aagctccgtt aggagcgcga tgtttatagc cacgaataca gagtccagct ccgtaggagc
     1201 gacatgttta tttcgattgg cgtattccgc tcctacggac cttctgaagt aatgctggag
     1261 cgatggtcta taaatatttc gttcctacgg aatgacgaaa cactcccccg caaactaacg
     1321 agtgcgcatg actgacgatc aaccaaacac tgaagcgaac gcaggcgatc gctatcagac
     1381 cgaactcgcc cactcaatca tcgaatcgct gctcgaccac acccgcgtcg tcagcgatct
     1441 aatcgccgtg atggcccagg cactcgatca agacaccacc aaagcactaa cgcaaactcc
     1501 gacttggcaa gcctatctcg aaagccgccg aaggatggaa cacacgcgcg aggatatcga
     1561 aagatttgcc gagctgatga agcaagtcag cgcagactaa ttttcaatct cgacgatgag
     1621 ttggacatta gacttgatgc tcaactgccc agccgcgatt ggagtcggta ccttcttcat
     1681 gtccattgca tatcccagcc tgcttgattc gtagtgaagt tccccgctca cggtcgagcc
     1741 ttcgttctcc tcaactacgc gcgccacgtg tccgccgaga gcctgcgcta tcgagcgggc
     1801 cttgttcatt gcttgctgag ttgcgtcggc caatgcctgt ccgcgggcgg ggctagtctg
     1861 ccgcaagaca aacgagat
//
LOCUS       DASZZE010000353         7334 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_58196, whole genome shotgun sequence.
ACCESSION   DASZZE010000353 DASZZE010000000
VERSION     DASZZE010000353.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7334)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7334)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7334
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58196"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..202
                     /locus_tag="VHD88_06780"
     CDS             <1..202
                     /locus_tag="VHD88_06780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004513407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HVS21534.1"
                     /translation="RAALYMAALVATKHNLVIKTFYRRLLTAGKQKKVALTACMRKLL
                     VILNAMFRNQTSWQPPRLVPGA"
     gene            441..890
                     /locus_tag="VHD88_06785"
     CDS             441..890
                     /locus_tag="VHD88_06785"
                     /inference="COORDINATES: protein motif:HMM:NF042871.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IIL restriction-modification enzyme MmeI"
                     /protein_id="HVS21535.1"
                     /translation="MVVEETSRPICDVPRLISGSQRIDDGNYIFDEAEKAKFLIREPG
                     SEIYLRPYVGGEEYINGQKRWILSLQKASPRELRAMPGVIERMRNVSAYRARSKRKST
                     LAIADTPQRYNVEVIPDRPFLVIPEVSSERRAYVPIGWLEPSNYSQQ"
     gene            1087..1344
                     /locus_tag="VHD88_06790"
                     /pseudo
     CDS             1087..1344
                     /locus_tag="VHD88_06790"
                     /inference="COORDINATES: protein motif:HMM:NF042813.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type IIL restriction-modification enzyme MmeI"
     gene            complement(1471..2298)
                     /locus_tag="VHD88_06795"
     CDS             complement(1471..2298)
                     /locus_tag="VHD88_06795"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HVS21536.1"
                     /translation="MTVDGARLHFLIQGAGRPVVLIHGNPGSGQDWTRLFGPLAAHHK
                     VIAFDRPGHGYSQRPKRPDATVEVQARLLHDALKQLHVARPIVVGHSWGGALALVYAI
                     NYPKEVAGVVLVAPAVYESQDGVSFLTSLPAMPVVGDAVNSVLTPLFGASIVRSELKK
                     AFSPDPVPKNYLRSVLSEWTRPKKVKAYSLDEASLNDCLKKFSPRYSEISVPVSILAG
                     DSDLIVSEKDNAERLHQALPKSHLIVLPKTGHQIPFTRSQAVVDEIERVQRLSRVRI"
     gene            complement(2655..3626)
                     /locus_tag="VHD88_06800"
     CDS             complement(2655..3626)
                     /locus_tag="VHD88_06800"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HVS21537.1"
                     /translation="MKVTGRLKQAYVASRVSHHHSKALSKFVTVEDVRLHFVIKGAGR
                     PVVLIHGNPGSCGDWTRLYSPIASRYQAIAFDRPGHGHSDRPNHRNITAEVQANLLHA
                     ALAELGIERPILVGHSWGGALAMIYALIYPESLSGAVLLAPAVYESEDGVSFLTKLPA
                     MPVVGDVMNFLFTPLLGAWVVRTDLQKAFAPDRVPGNYLRAVLSEWTRPKKVKWYSVD
                     DALLNDCLRKFSPRYSDIRVPTAIVTGDSDLIVPVEENSRRLHEALPKSHLSVLPATG
                     HQIPFTRPRAVVDAIDHIAAQTAGLESGGVGQSLGPQPAVFGAVARP"
     gene            complement(3732..4934)
                     /locus_tag="VHD88_06805"
     CDS             complement(3732..4934)
                     /locus_tag="VHD88_06805"
                     /inference="COORDINATES: protein motif:HMM:NF021445.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2156 domain-containing protein"
                     /protein_id="HVS21538.1"
                     /translation="MFIPVRDLWWLAAGGAGYGARYMKVRLDAALTARQRRRLPDPTG
                     ELLRLQTLYGYNAHSLASIAPGALLWSTPDIDGAIIYGEFGRVWLAAGDPLAPLEEMA
                     ELARQFAAFAKRKGRVVAFVPGSSEFARMMTSHDFAAVKVGAAPYFDLETWQPRGDSA
                     KKLRAGVNQARRAGVEIEMIADGVDQSLKKETAQLCMRWLDSRRAGTTFGWLVALDPF
                     LHSEHKKYFAARVNGKLVGFLAASPIPARKAWYLEDVLREPDAPQGTSTLLVVEALAK
                     LKAEGATRATLGTSPLATDGPNVVLSSEHRVIERALRMASRRLGGFYNFEGLRRFKGK
                     FVPSWWESEYVLSQRGVTIPPRIAHAIVRALVPGGLTQLLTRQALRVTRLETVTKSLS
                     ASSRPAKK"
     gene            complement(5157..6182)
                     /locus_tag="VHD88_06810"
     CDS             complement(5157..6182)
                     /locus_tag="VHD88_06810"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HVS21539.1"
                     /translation="MRYVDNPPNPWLTHSVEWIGEPPAAKIEVFEETETRSIISTNDS
                     PDVAFDHSVNCYRGCVHGCTYCFSRPTHEYLGYGAGTDFERKIVVKMRAPELLRKELM
                     KSSWKGDEIVFSFTSDPYIPLEANYKLTRRCLEMCAEFRNPVGIVTKSALIRRDVDVL
                     QKLARDASVTVFFSIPFADYDIARAVEPFAPQPGARFEAMKILSDAGIEVGIGIAPTI
                     PGLTTDIPELLQRAKDCGARRAFINMLRLPGSVAPYFEQRLREKLPTKADRILNRIRD
                     ARGGKLNSSVFGERMRGKGQYWSAQEKLFEVYCRRLGFNEHRVGSERHARASTFRRPS
                     PQGSLFG"
     gene            complement(6298..6822)
                     /locus_tag="VHD88_06815"
     CDS             complement(6298..6822)
                     /locus_tag="VHD88_06815"
                     /inference="COORDINATES: protein motif:HMM:NF014525.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HVS21540.1"
                     /translation="MTAAKLADQESAQNLHASESQAKPHINITPLIDVLLVVLIIFMV
                     MSPLKPSRFLTKVPSKPDQSTHVDPPPLGLVVTIKYDGSLMLNGMSDMGSVNDTSKLS
                     TTLSDLFQQRLQNHAYSYQLRDRIDLPEEMRIEKTVFIKAPRAIPYADVVRVLDGIKG
                     AGANPVGLQIDDLN"
     gene            complement(6985..>7334)
                     /locus_tag="VHD88_06820"
     CDS             complement(6985..>7334)
                     /locus_tag="VHD88_06820"
                     /inference="COORDINATES: protein motif:HMM:NF017532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HVS21541.1"
                     /translation="PGSHRWGLLPITGLVNDMRAIESVLSEEQKSQFKPIPIELKKGE
                     CSFHHPLMIHGSYANLSDCPRHGAVINVFRDGVSSASNDPLLAGVPAIPAGGKMDGQF
                     FPLLFDPAAPVPS"
BASE COUNT         1643 a         2077 c         2072 g         1542 t
ORIGIN      
        1 acgagctgct ctgtacatgg ctgctttggt cgccaccaaa cacaacctag ttatcaaaac
       61 cttctatcgt cgcctgctca ctgccggcaa acagaagaag gtggccttga ccgcttgcat
      121 gcgcaagtta ttggtcattc tcaatgccat gttcagaaac caaacctcct ggcaaccgcc
      181 tcggctcgtt ccaggagctt gacctgaaag acagttgcta ttttctgccg tccgctttgc
      241 ggacttggtt gaacccaatg cgcatcaggg ttcgagacaa caatcactga ttgaggcttt
      301 cgagggttcg gcgacgggct caggaaccgt caatcaaacg cctatttagt tacgatgacc
      361 ttcgcggtga tccaaccgag agctaacacg ccgcgctcac tccttatctg ttcgacgcag
      421 gcaacgttgc caatcgtcac ctggtcgtcg aagaaacaag ccggccgatt tgcgacgtgc
      481 ctaggctgat cagcggctcg caacgcattg acgatggcaa ctacatcttt gatgaagcgg
      541 agaaagccaa attcttgatc cgtgaaccag ggtctgagat ttacttgcgt ccgtacgtcg
      601 gtggtgagga atacatcaat ggtcagaagc gctggattct tagccttcag aaagcgtctc
      661 cgcgggaact tcgggccatg cctggtgtga tcgagcgaat gagaaatgtt agcgcctacc
      721 gagcgcggag caaacgcaag agcactctcg ctatcgctga cacgccgcag cgctataacg
      781 tcgaggttat tcccgatcga ccttttcttg tcattcccga agtgagttca gaacggcgcg
      841 cttacgtgcc gattggctgg ttagagccct ccaactattc ccagcaataa gctgcgattt
      901 attaaggatg ccgatctgtg gcactttggc atactcacgt cgcgaattca tatggcctgg
      961 gttcgcttcg atatgtcgga ggccggttgg aaagtcgcta tcaatactcg attggaatcg
     1021 actacaacac cttcccctgg cccgatgcta ctgatgagca gtgcgcaaga gtgagaaccg
     1081 ctcgctcaag cagttctcga tgctcgtgcg caatatccca actcgacgct tgctgatctg
     1141 tatgatgttg atgttatgcc gcgcgaattg cgaaaggcgc atcaggaact cgataaagcg
     1201 gtcgacaagc tctatcggcc caatccattc gccggcgacc gtgatcgcgt cgaacatctc
     1261 ttcggccttt acgagaaact cgtcgcgcca ttggcggcca ccgctccgaa gccgagacgc
     1321 cggcgatcgc gagcgatgag ataggtttgg cggcctgccg ggtggaatag cacccgcccg
     1381 ctacgcttcg cgccctctct cctgcccctc tcccaatggg agaggggaga acggcagaac
     1441 ccttgctgac gcgcgggctt ctgacacgta tcaaattcta acccgggaca gcctttgaac
     1501 tctttcgatc tcgtcaacca cggcttgcga ccgtgtgaaa ggaatttgat ggcccgtctt
     1561 aggcagaacg atcaagtgtg attttggcag cgcctgatgc aggcgctcgg cgttgtcttt
     1621 ttccgaaacg atcagatcag aatcgccggc aaggatcgat acgggaacgc taatctcaga
     1681 ataccgagga ctgaattttt tcaaacaatc attcagcgat gcttcatcaa gtgagtacgc
     1741 ctttactttc ttcggtctgg tccattcaga gagtacggac cgcagataat tcttcggcac
     1801 cggatccggt gagaacgctt tcttcagttc gctgcgcacg atcgaagctc caaataaggg
     1861 cgtcaacact gagttcaccg cgtcgccgac gaccggcatc gcgggaaggc tagtcagaaa
     1921 cgaaactccg tcctggcttt cataaaccgc cggagcgaca agcacgaccc cagctacttc
     1981 tttcggataa ttgatcgcat agacaagtgc cagcgcgccg ccccaggaat gaccgacgac
     2041 aatcggacgc gcgacatgga gttgcttgag cgcgtcgtga agtaaacgcg cctgaacttc
     2101 gacggtggcg tctgggcgct tcggccgctg gctgtaacca tggccgggac gatcaaaagc
     2161 gatgacctta tgatgcgccg caagcggacc aaacagacgc gtccaatcct gacctgaacc
     2221 gggattgccg tgaataagaa ccaccggccg gcccgcacct tggatgagga aatgcaggcg
     2281 cgcgccgtca acggtcacga actttgaagt ggactgagaa cgctcagatt gagtctctgg
     2341 gccggagttt ggaggcctga aactggtggc gctaaccctg acgctgattt caccgttgag
     2401 gcttgtcggg gcatcatccg aaagattctg cgcgctctgc gattgaaagc tcgacaggag
     2461 caatccgcta cacagcaata gttgaacgca gaacttcacg gagaaaattt tcccaaatcg
     2521 gttcggatcg gttcaggggc aaaaggaaaa ccaggagtcg ttaccgcacg cgcgattgac
     2581 ctcccggtct taatacttgt tcgtactaag cttatacgat tgagagaggg acttggcaac
     2641 tgaagagccc tccctcacgg tcgggctact gccccgaaca ccgcaggttg cggacccaga
     2701 gattggccca ctccacctga ctccagcccc gctgtctgag cggctatgtg atctattgca
     2761 tcgacgacag cccgcggtcg cgtaaaaggg atctggtggc cagtcgcggg aagcacgctc
     2821 aagtgtgatt tcggcagcgc ctcgtgcagc cgtcgcgagt tctcttctac cggaacgatc
     2881 aaatctgaat cgccggtgac gatcgcggtg gggactcgga tatctgaata gcgcgggctg
     2941 aattttcgca ggcagtcgtt gagcaaagcg tcgtcaacgg aataccactt gaccttcttt
     3001 ggtcgtgtcc attcagagag cacggcccgc agatagtttc ccggcacgcg gtcgggcgcg
     3061 aaggctttct gcaaatccgt tctgactacc cacgcgccga gcagcggcgt gaacagaaag
     3121 ttcatcacgt cgccgacgac cggcatcgcg ggaagcttag ttagaaacga aacgccgtct
     3181 tcactttcat aaaccgccgg agccaaaagc accgcgccgg acaaagactc gggatagatg
     3241 agcgcgtaaa tcatcgccag cgcgccgccc cacgaatgac caaccagaat cggacgttcg
     3301 atgcccagct cggcgagcgc ggcgtgcaag agattcgcct ggacttcggc agtgatgttt
     3361 cggtgatttg gccggtcgct gtggccgtga ccgggacgat cgaaagcgat ggcttgataa
     3421 cgcgacgcaa ttgggctgta gagtctcgtc caatcaccac aagaaccggg gttgccgtga
     3481 atcaaaacga cgggacgacc ggcgcctttg atcacgaaat gaagacgaac gtcttcaaca
     3541 gtgacgaatt tcgagagcgc cttggaatgg tggtgagaaa cgcgggatgc gacgtatgcc
     3601 tgtttgagtc ggccggtgac tttcacgttt tgcggacccc tcgaagcgac gattcaccgc
     3661 ggaggcgcag agaacgccga ggtttcacag aaaaaaccat tccgaattca actcaggggg
     3721 caaagactcg attacttctt cgcaggtcta gacgaagcgg acaatgattt ggttacagtt
     3781 tccagtcgag tgactcgcag cgcctgtcgc gtgagcagtt gcgtgaggcc gcccggcacc
     3841 agcgcgcgca cgatcgcgtg cgctattcgc ggcggaatcg tgacgccacg ttgactcaaa
     3901 acatattcac tctcccacca actcgggacg aactttcctt tgaagcggcg tagtccctcg
     3961 aagttataga agccgcccag ccgtcgcgaa gccatgcgca acgcgcgctc aatcacgcgg
     4021 tgttcgctgc taagcacgac gttcggaccg tcggtggcca gcggcgacgt tcccagagta
     4081 gcccgcgtcg ctccctctgc tttcaacttc gccaacgctt cgacgacgag cagcgttgag
     4141 gttccctgcg gcgcgtcggg ttcgcgcaag acgtcttcca gataccacgc tttgcgcgcg
     4201 ggaatcggac tcgcggccaa aaagccgacc agtttgccgt taacccgcgc ggcaaaatat
     4261 ttcttgtgct cggaatgcag gaatggatcg agtgcgacca gccaaccaaa ggtcgtaccc
     4321 gcgcgacgcg agtcgagcca gcgcatgcaa agctgcgcag tctctttctt taaagactga
     4381 tcgacgccat cggcgatcat ttcgatttcg acgccggcgc ggcgcgcttg attcacgccc
     4441 gcgcggagct tcttcgcgct gtcgccccgc ggttgccagg tttcgagatc gaaatagggc
     4501 gcggcgccga ctttcactgc ggcaaaatca tgggaagtca tcatgcgcgc gaattcgctg
     4561 ctgccaggca cgaacgcgac aacgcgacct tttcgttttg caaaagcggc gaactggcgc
     4621 gcgagttccg ccatttcttc caatggcgcg agcggatcgc cggccgcgag ccacactcgt
     4681 ccaaactcgc cgtagatgat cgcgccgtcg atatccggcg ttgaccagag caatgcgccg
     4741 ggcgcgatgc tcgctaaaga atgcgcattg tatccgtaga gagtttgcag gcgcagcaac
     4801 tcgcccgtgg gatcgggcag ccgtcgccgt tgacgagcag tcagcgcagc atcgaggcgc
     4861 accttcatgt aacgcgcgcc gtaacctgcg ccgcccgcgg ccaaccacca gagatcgcga
     4921 actggaatga acatgggggc tgtgacagtc cttttacgcc taatcgttcg gttcagtcaa
     4981 cccaagatta gatagtagcg aatgcgtaag ggtttccaca tccagcagac attaatcgat
     5041 gaatagaaaa gcagcaggaa attgcaaggt gttagtcaga accgcctgcg atagcgggcg
     5101 gctaaagcac tggcaaggat gccggtgaac cgcacgcagg atgcgtgcgc tccggatcac
     5161 ccgaacagcg aaccctgcgg ggagggccgg cggaaagtgc tcgctctggc gtggcgctcg
     5221 cttccgactc gatgctcgtt aaagccgagt cgcctgcagt aaacttcgaa aagcttttct
     5281 tgcgctgacc agtactgacc cttgccgcgc atgcgctcgc caaagacact ggagttcaac
     5341 ttgccgccgc gcgcgtcgcg aatgcgattg agaatgcgat cggctttggt cggaagtttc
     5401 tcgcggagac gttgttcgaa gtaaggggcg acgctcccgg gcagcctcag catgttgatg
     5461 aacgcgcggc gcgctccgca gtctttcgcg cgctgtaaga gttcgggaat gtcggttgtc
     5521 aatcctggaa tcgtcggcgc gatgccgatg ccgacttcta tgcccgcgtc tgacaagatt
     5581 ttcatcgctt cgaagcgcgc gccaggctgt ggcgcgaatg gttcgaccgc gcgcgcaata
     5641 tcgtaatccg caaatgggat cgagaaaaaa acagttacgc tcgcgtcgcg cgccagtttt
     5701 tgcagcacgt caacatcgcg gcgaatcaga gctgatttag ttacgatgcc cacggggttg
     5761 cgaaactcag cgcacatttc cagacagcgc cgcgtcaatt tgtaatttgc ttccagcgga
     5821 atgtacggat cggaagtgaa cgagaaaacg atctcgtcgc ctttccacga agacttcatc
     5881 aattctttgc gcagcagttc gggcgctcgc attttcacga caatcttgcg ctcgaaatcc
     5941 gtgcccgcgc cgtaaccgag atattcgtga gtcggccggc tgaaacaata cgtgcagcca
     6001 tgcacacaac ctcgatagca gttcacggaa tgatcgaacg ctacatcagg actgtcattc
     6061 gtgctgatga tcgagcgcgt ctcagtttct tcaaagactt cgatcttcgc ggcgggcggt
     6121 tcaccgatcc attcaacgga atgtgtcagc cagggattcg gcggattgtc gacgtagcgc
     6181 atgtgtgcaa tcgtgtctta tcggtgcaac acagcttaac agagacggga cttcggagtc
     6241 tagaggctag aggctgggag tcagccgtct ggaatctgga atggactcgt ccgtcagcta
     6301 attgagatcg tcgatctgca aacccacggg attggcgccg gcgcctttga tgccgtcgag
     6361 cactcgcacc acgtcggcgt atggaatcgc gcggggcgct tttatgaaga cggttttctc
     6421 gatgcgcatt tcttcgggaa ggtcgatgcg atcacgcaac tgatagctgt acgcatgatt
     6481 ctgcaatcgc tgctgaaaga gatcgctaag cgtcgtgctt agcttactcg tatcgttgac
     6541 tgagcccatg tcgctcatcc cattaagcat gagactgccg tcatacttga tagtgacaac
     6601 gagaccaagc ggcggcggat cgacatgcgt ggattgatcc ggcttcgacg gaactttcgt
     6661 cagaaatcgc gacggcttca gcggcgacat aaccatgaaa atgatgagca ccacgagcag
     6721 cacatcgatt agtggcgtga tgttgatgtg gggcttggcc tgagattccg aagcatgtag
     6781 gttctgagcc gattcttgat cagctagttt tgcggcggtc atgacggttg tcctcctcga
     6841 tgacgattag acatccgacc gcggcaaaat gttccgagct aaaccttcct cagattgccc
     6901 tccctcacgg tcgggcttct gacaggcgac ggtcgggcta ctggcacgct gcaccgttgt
     6961 cagaagcccg cgcgtgagca agggctatga aggcactggt gccgccggat caaacagcaa
     7021 cggaaagaac tgtccatcca tttttcctcc ggctggaatc gcgggcacgc ctgcgagtag
     7081 cggatcgttc gaagccgaag acacgccgtc gcgaaagaca ttgattaccg ctccatgccg
     7141 cggacaatcg ctcaggttcg cataagaccc gtgaatcatc agcggatgat gaaacgagca
     7201 ttcgcctttc ttcaactcga tcggtatggg tttgaattgt gatttctgct cctcgctcaa
     7261 gacgctttca atcgcgcgca tgtcgttcac aagaccggtg attggcaaaa gcccccagcg
     7321 atgactgccc ggca
//
LOCUS       DASZZE010000354         3872 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_288679, whole genome shotgun sequence.
ACCESSION   DASZZE010000354 DASZZE010000000
VERSION     DASZZE010000354.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3872)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3872)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3872
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_288679"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..514)
                     /locus_tag="VHD88_06825"
     CDS             complement(<1..514)
                     /locus_tag="VHD88_06825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21542.1"
                     /translation="MINKQFTTEAQRLHREPQSREITPGPLGVWLDRAIVGALVLLVI
                     AAPNSIAATQTAWLLGLLFWVLRFAVWPRSEVHRTPIDYAMLGFFILTGISAVLSYEP
                     MVSIGKLRAASLFTIVYLFAQNVRSARVLRALAILLVASCMVSVFYTFGQYAVGRGVK
                     VYEVRSDSPLS"
     gene            579..1838
                     /locus_tag="VHD88_06830"
     CDS             579..1838
                     /locus_tag="VHD88_06830"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HVS21543.1"
                     /translation="MVETYMRKSISLVGLLIIVTAFAQAQVKTVAQYIEQVQALANRA
                     DVKAANDYIDRNHESIMREWIAITEINAPSGQEQPRAKYIEGLLRKYRMDDIHYDSVG
                     NLIAVRKGTGGGPLIVFDAHMDTVFQPGLQIKATIRDGKIYAPGIGDDTRNVEALLAT
                     IRALNEAKIKTKGDLVFVFTVEEETTFKGVKNYVNENKGKIDQYIALDGGYEGFTYAG
                     IGINWYRQHFIGPGGHTRSRTPPYSATLPLARAIERIYQLKVPTNPSSNLNIGMLGGS
                     EVVNAKASDAWFSIDLRSTSNEVIADLEKQIQNIVNEEAARVGMKVKTDVISKSPAAA
                     IPGHRESYLVRISEAVHRVMGFDPPITNAGSNNSSAALLAGISSISTGAGPCDGAHSL
                     AENCEIEPLYKGIKKILLLELALAGMQ"
     gene            complement(1853..2191)
                     /locus_tag="VHD88_06835"
     CDS             complement(1853..2191)
                     /locus_tag="VHD88_06835"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014505.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004521 - RNA endonuclease activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HVS21544.1"
                     /translation="MARILRGDILWANLDPTRGHEQAGARPVLVLSQKVFNERSGTVI
                     AVALTSQRPSAGFPLTLELADQSLPKKSWAKISQIRTLSVQRLGKKMGKATAEELENI
                     IEGLNEIIGA"
     gene            complement(2176..2418)
                     /locus_tag="VHD88_06840"
     CDS             complement(2176..2418)
                     /locus_tag="VHD88_06840"
                     /inference="COORDINATES: protein motif:HMM:NF013561.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix domain-containing protein"
                     /protein_id="HVS21545.1"
                     /translation="MSVAKVTVSIESGLLKRVDHLVKARVFSNRSQAIQAAVQETVAR
                     LDSNRLARECAKLDKAQEQSLADEGLASEAAEWREY"
     gene            2417..2620
                     /locus_tag="VHD88_06845"
     CDS             2417..2620
                     /locus_tag="VHD88_06845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21546.1"
                     /translation="MVSSITIRHTHCQEAARRALREGISSISTGAGPCDGAHSLAENC
                     EIEPLYKGIKKIPLLEIALAGMQ"
     gene            complement(2650..3525)
                     /locus_tag="VHD88_06850"
     CDS             complement(2650..3525)
                     /locus_tag="VHD88_06850"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HVS21547.1"
                     /translation="MSPSYFGKPRSVVSAELKPIEEVDCPLCHLAPKPFAVDYQGSQL
                     CQCQSCGLQFVSPRPTFDQMSAGVYTDSYLSDHDYAAQHNKVDSYNFARQLSNYEHLL
                     GRRGKILDVGCGNGSFLHYAQTQGWEIFGTDIRVSPAAKRLRCPLWEGQLQETDFGSA
                     RFDVVRFNHVIEHIQNPLDALTRTRDLLKPEGILYTSVPNITGLSSRLKSLQCRLGLK
                     QHRWRHYAALHHLFFFSPQTLRLVIESAGLRVLLWETPVLKKSRQHALVEVLYRYLLE
                     RSNSASILDFYCALA"
     gene            complement(3617..>3872)
                     /locus_tag="VHD88_06855"
     CDS             complement(3617..>3872)
                     /locus_tag="VHD88_06855"
                     /inference="COORDINATES: protein motif:HMM:NF014453.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HVS21548.1"
                     /translation="GDMSIVGPRPPISYEVEAYELWHRKRLDMKPGITGLWQVSGRNR
                     LSFEEMVRMDLYYIENWSLLLDLKIILRTLPVMLRGADAY"
BASE COUNT          933 a         1088 c         1040 g          811 t
ORIGIN      
        1 cgctcagcgg actgtcggag cgtacttcat aaactttgac gccgcgcccg acggcgtatt
       61 ggccgaacgt gtagaagaca ctaaccatgc acgacgcgac cagtagaatc gccagcgccc
      121 gcaggacgcg cgccgagcga acgttttgcg cgaacagata gacgatcgtg aacagactgg
      181 cggcgcggag cttgccgatg gaaaccatgg gctcgtaaga cagcactgcc gagatgccgg
      241 tcaggatgaa gaagccaagc atcgcgtaat cgatcggcgt gcgatgaact tccgaccgcg
      301 gccaaaccgc gaagcgcaaa acccagaaga gcagtccgag caaccacgcg gtttgcgtcg
      361 ccgcaatcga attcggcgcg gcgatcacca ggagaactaa tgccccgaca atcgcgcggt
      421 ccagccagac gcccagcggt ccgggcgtga tctcgcgact ctgtggttct ctgtgcagcc
      481 tctgtgcctc tgtggtgaat tgcttattaa tcactcatcg tctttcacaa cggagcagaa
      541 atgcttagaa tccccgaagc tcggattata ttcgacctat ggtggaaact tacatgcgaa
      601 aatcgatttc ccttgtcggc cttctcataa tcgtgacggc gtttgcgcaa gcacaggtca
      661 aaaccgtcgc tcagtacatc gaacaggttc aggcgctggc gaaccgcgcc gacgtgaaag
      721 cagcgaacga ttacatcgat cgcaatcacg aaagcatcat gcgcgaatgg atcgcgatta
      781 ctgaaatcaa cgcgccttcg ggtcaggagc aaccccgcgc gaaatacatc gaaggtcttc
      841 tgcgcaagta tcgcatggac gacattcatt acgactcggt cggcaacctg atcgccgtgc
      901 gcaaaggcac cggcggcggg cctctgatcg tctttgacgc acacatggat acagtgtttc
      961 agccgggcct gcaaatcaag gccacgattc gcgacggcaa gatctacgcg cccggcatcg
     1021 gcgacgatac gcgtaatgtc gaagcgctgc tggccacgat tcgcgcactg aacgaagcaa
     1081 agatcaaaac caaaggtgat ctggttttcg tcttcaccgt cgaggaagag acgacattca
     1141 aaggcgtaaa gaactacgtc aatgaaaaca agggcaagat cgaccagtac atcgcgctcg
     1201 acggcggcta cgaaggtttc acctacgcgg gcatcggtat caactggtat cgccaacatt
     1261 tcatcggacc cggcggccac acgcgctcgc gcacgccgcc gtactcggcg acgctgccgc
     1321 tggcccgcgc gattgagcgc atctaccagt tgaaagtgcc aaccaatcct tcttcgaact
     1381 tgaacattgg catgctcggc ggttcggaag tggtcaacgc gaaggcttcc gatgcgtggt
     1441 tcagtataga tctgcgctcg accagcaacg aagtgatcgc cgatctggaa aagcagattc
     1501 agaacattgt taatgaagaa gccgcgcgcg tcggcatgaa agttaagacc gacgtgatct
     1561 caaaatcacc cgctgccgcg attcccggac atcgcgaatc atatctcgtg cgcatctccg
     1621 aagccgtgca ccgggtgatg ggtttcgatc cgccgatcac gaatgcagga tcgaacaact
     1681 ccagcgccgc gctactcgcc ggcatctctt cgatctcgac cggcgccggc ccctgcgacg
     1741 gcgcccacag cctcgctgag aattgcgaaa tcgaaccgct gtacaaaggg attaagaaga
     1801 ttctattgct ggaacttgcg ctggcgggga tgcagtagtg aagggcggga ccttaagctc
     1861 cgataatctc gttcagtcct tcaataatgt tctccagttc ttccgcagtg gctttgccca
     1921 tcttttttcc cagtcgctga accgacaacg tgcgtatctg gctgatcttc gcccaggatt
     1981 tctttggcaa actttgatcg gcaagttcaa gcgtcaaggg aaatcctgcg ctcggtcgtt
     2041 gactggtcaa ggccactgcg atcactgttc cggaacgctc gttgaaaact ttctgactca
     2101 agaccaacac ggggcgcgca ccagcttgtt cgtgcccgcg cgttggatca agatttgccc
     2161 aaagaatatc gcctctcagt attcgcgcca ttccgccgcc tcggaagcca ggccttcatc
     2221 agctagactt tgttcttgag ctttgtccag cttggcgcac tctcgtgcca gacggttgct
     2281 gtcgagacga gcaacagtct cctgaaccgc tgcctgaatt gcctggctgc gattagagaa
     2341 aacgcgcgcc ttcaccagat gatcgactct cttgagcaaa cctgattcga tggaaacggt
     2401 aacctttgca acactcatgg tatcgagtat taccattcgt catactcact gtcaagaggc
     2461 tgcaaggcgc gctttgcgcg agggtatctc ttcgatctcg accggcgccg gcccgtgcga
     2521 cggcgcccac agcctcgcgg agaattgcga aatcgaaccg ctgtacaaag ggattaagaa
     2581 gattccattg ctggaaattg cgctggcggg gatgcagtaa agcgggatca cattcaacgc
     2641 tgcaccaggc taagccagcg cgcagtagaa gtccaggatg ctggcgctgt tagatctctc
     2701 caggagatat ctatacaaca cctcaaccag agcatgttga cgggatttct tcagcactgg
     2761 tgtctcccag agcaacacgc gcaatccggc gctctcaatg accaatcgga gtgtttgtgg
     2821 cgagaagaag aacaggtgat gcaaggcggc gtaatgacgc caacgatgct gttttaatcc
     2881 cagtcggcac tggagactct tcaaacgtga actcaatcca gtgatgttcg gaacgctggt
     2941 atagagaatc ccttcaggct tcagcaaatc acgggttcgg gtaagcgcat ccagtgggtt
     3001 ctgtatgtgc tcgatcacat gattgaaacg aacaacatca aaacgcgcgc tgccaaaatc
     3061 agtttcctga agctgacctt cccagagagg gcacctcaac cgtttggcgg caggtgaaac
     3121 gcgaatatca gttccgaaga tctcccaacc ttgagtttgg gcgtagtgga ggaaagagcc
     3181 gtttccacat ccgacgtcga ggatcttgcc gcggcggcca agtaagtgtt cataattaga
     3241 aagctgacgc gcgaaattgt aactgtcgac tttattgtgt tgcgcagcat agtcgtgatc
     3301 ggataagtaa gaatccgtat agacccccgc gctcatttga tcgaacgtcg ggcgtggact
     3361 gacaaattgc agtccgcaac tttgacactg gcacagttgc gagccttggt agtcgacggc
     3421 gaaaggtttc ggggcgagat gacaaagcgg gcagtcaact tcctcgatag gcttaagctc
     3481 cgcgctaact acggaacgtg gtttgccaaa ataactcggt gacatacttg caatggctca
     3541 attgtcggca tcagcgctca agttaatcaa actcgcgcgg gtctgcactc tgttgatagt
     3601 ctctccagtc cgatgttcaa tacgcatcgg cgcctctcaa catcaccggc agcgtccgca
     3661 gaatgatttt taaatccagc agcagcgacc agttttcgat gtaatacaaa tccattcgca
     3721 ccatctcttc aaacgacaga cgattgcgac ctgagacctg ccacagtccg gtgatgccgg
     3781 gtttcatgtc gagtcgcttg cggtgccaca actcgtaagc ttcgacctcg taagaaatcg
     3841 gcgggcgcgg gccgacgatg ctcatgtcgc cg
//
LOCUS       DASZZE010000355         2813 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_140320, whole genome shotgun sequence.
ACCESSION   DASZZE010000355 DASZZE010000000
VERSION     DASZZE010000355.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2813)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2813)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2813
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_140320"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1090
                     /locus_tag="VHD88_06860"
     CDS             <1..1090
                     /locus_tag="VHD88_06860"
                     /inference="COORDINATES: protein motif:HMM:NF013237.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PLP-dependent aspartate aminotransferase family
                     protein"
                     /protein_id="HVS21549.1"
                     /translation="QVFAGEKPGYVYTRYGNPTIAALEDAVRTIEGGATACAYASGMA
                     AVHAALFACELTPGATVLASQDLYGATTDLLFTIFGSFGIKTVTADFGDLIGLRARAR
                     EVKPRVMIAETISNPLLKVCDIDACAEIAREVGARLIIDNTFASPYLCQPLKHGADIV
                     VHSATKHLSGHADAMGGIAISRDTTDSMALIGVMKLVGGVLSPWEAHEIMRGLKTLAL
                     RMDRHCENARALAERLQNHPLIGRVHFPGFATADYQAVVKRIVREPHAGALAAIELRD
                     NTREAAFRFMDALKLCVRSTSLGDVFTSVLHPATASHRDLSPARRKELGISDGLVRMS
                     VGIENVNDIIADIEQALAVTEPGAVATG"
     gene            1094..1534
                     /locus_tag="VHD88_06865"
     CDS             1094..1534
                     /locus_tag="VHD88_06865"
                     /inference="COORDINATES: protein motif:HMM:NF025819.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M67 family metallopeptidase"
                     /protein_id="HVS21550.1"
                     /translation="MIGISQQHLAEIRAHGERDYPFECCGLLLGQFTDGRKEVVETYA
                     ISNSREEDAKRNRFLITPEELMRGEKHAREKSLDVVGFYHSHPDDRAVPSQYDLEHAW
                     PTYSYIVVAVEKGRTADLRSWEMEPDRSRFNEEVLSVPPAVAGG"
     gene            1561..>2813
                     /gene="moeB"
                     /locus_tag="VHD88_06870"
     CDS             1561..>2813
                     /gene="moeB"
                     /locus_tag="VHD88_06870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_257790188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-synthase adenylyltransferase MoeB"
                     /protein_id="HVS21551.1"
                     /translation="MPVTIAIPTALRQFAGGQSEIQVDASTAGEALDQLTSTHTELRR
                     HLFNEHALRNFVNVYVNDEDIRHKDGPATPVKDGDTILIVPSIAGGAAVLDKPAGTDA
                     GAPQAGMPALHNGLLPMLSNEEIARYSRHLIMPEVGMTGQRKLKAASILMIGTGGLGA
                     PLGMYLAAAGVGRLGLVDFDVVDASNLQRQIIHGTKDVGRPKIASARDRIEDINPHVE
                     VETHETRLTSENALGLFVNYDVIVDGTDNFPTRYLVNDACVLTGKPNVYGSIFRFEGQ
                     ASVFWAVRGPCYRCLYPEPPPPGLVPSCAEGGVLGVLPGIIGAIQATETIKIILGAPD
                     IMVNRLLLFDAWRMRFRELKLRKNPDCPVCGDNPTIKELIDYEEFCGMTQQPQATQPT
                     MEEITATELKQRLDSGDDIQIIDVR"
BASE COUNT          618 a          767 c          843 g          585 t
ORIGIN      
        1 tcaggtcttc gccggcgaaa agcccggtta tgtttacacg cgctacggca acccgaccat
       61 cgcggcgctg gaagatgccg tgcgcacgat tgaaggcggc gcgacagcgt gcgcttatgc
      121 ttcgggcatg gcggccgttc atgcggctct ctttgcctgc gagctaacgc caggcgcgac
      181 cgtgctcgct tcgcaggatc tctacggcgc gacgacggat ctgctgttca cgatcttcgg
      241 ttcgtttgga atcaagactg tcaccgcgga tttcggtgac ctcatcggct tgcgagcaag
      301 agcccgtgaa gtcaagccgc gcgtgatgat cgccgagacg atctcgaatc cgttgctcaa
      361 ggtttgcgac atcgatgcct gcgccgaaat tgcgcgcgaa gttggcgcgc ggctgattat
      421 cgataacacg ttcgcttctc cttatctctg tcagccgctg aaacatggcg cagacatcgt
      481 cgtgcatagc gcgaccaagc acttgagcgg ccacgccgac gcgatgggcg gcatcgcgat
      541 ctcgcgcgac acgaccgaca gcatggcttt gattggcgtg atgaaacttg tcggcggagt
      601 tttgagccca tgggaagcgc atgaaatcat gcgcgggttg aagacgctgg cgctgcgcat
      661 ggatcgacat tgcgaaaacg cgcgagcgct cgcggagcgt ttgcaaaatc atccgctaat
      721 cggtcgtgtg cattttccgg gattcgctac tgctgattat caagctgtag tgaagcgcat
      781 cgtgcgtgag ccgcacgccg gcgctttggc cgcgatcgaa cttcgcgaca acacacgtga
      841 agctgcgttt cgtttcatgg acgcgctgaa actgtgcgtg cgctcgacga gtctcggcga
      901 cgtattcacc agcgtgctac atccggcgac ggcttcgcat cgcgacctgt cgcccgcgcg
      961 ccgaaaagag ttgggcatta gcgacggcct ggttcgcatg tcagtgggaa tcgaaaacgt
     1021 gaacgacatc atcgcggata ttgagcaagc gcttgctgtt acagaaccgg gagcggtagc
     1081 gaccggctag ccaatgatcg gaattagcca acagcatctg gctgaaatcc gcgcgcacgg
     1141 cgagcgcgat tatccgtttg agtgctgcgg cctgttgctg ggacagttca cggacggtcg
     1201 aaaagaagtg gttgagactt acgcaatttc gaattcgcgc gaagaggacg ccaagcgcaa
     1261 ccggtttctg atcactcctg aagaattgat gcgcggcgaa aaacatgccc gtgaaaaaag
     1321 tctggacgtg gttggcttct atcattcgca tccggacgat cgcgcggttc cttcgcaata
     1381 tgatcttgag cacgcatggc ctacttattc atacatcgtc gttgcagttg agaaaggccg
     1441 cacggcggat ttacgatcgt gggagatgga acctgatcga tcgcgtttca atgaagaagt
     1501 tttgtcagta ccacctgcgg tagcgggtgg gtaatgcaag gatgtagaaa ggaaacaccc
     1561 atgccagtca caatcgccat acctactgcg ctgcgacagt tcgccggcgg ccaatcagaa
     1621 attcaagttg acgcatccac tgcgggtgaa gcgttggatc aattgacttc aacgcacact
     1681 gaattgcgtc gtcatctttt caacgagcac gcgctccgca atttcgtaaa cgtgtacgtg
     1741 aacgatgaag acatacgtca caaagatggg cccgcgacgc ccgtcaaaga tggcgacacg
     1801 attctgatcg taccttcgat tgccggcggt gcggctgtat tggacaaacc agccggcacg
     1861 gatgccggcg caccgcaggc agggatgcct gcgctccata acgggctcct gccgatgctt
     1921 tccaatgaag agatcgcgcg ctacagccgt cacttgatca tgcctgaggt cggcatgact
     1981 ggtcagcgca aactgaaggc ggcgagcatc ctgatgatcg gcaccggcgg tttgggcgcg
     2041 ccattgggaa tgtatctggc ggcggcagga gtcggccgac tcggcttggt tgacttcgac
     2101 gtggttgatg cgtcgaactt gcagcgacag atcattcacg gaacgaagga cgtcggtcgg
     2161 ccaaagatcg cgtccgcgcg cgatcggatc gaagacatca atcctcacgt tgaggtcgaa
     2221 actcacgaaa ccagattgac cagcgaaaac gcgctggggc ttttcgtcaa ttacgacgtg
     2281 atcgttgacg gcacggacaa ttttccgacg cgctatctgg tgaacgacgc gtgtgtactg
     2341 accggcaagc caaacgttta tggttcgatc tttcgcttcg aaggacaggc cagcgtcttt
     2401 tgggccgtgc gcggcccgtg ctatcgttgc ctctatcctg agccgccgcc gccgggttta
     2461 gtgccttcat gcgcagaagg aggcgtgctc ggggtgctgc cgggaatcat cggcgcgatc
     2521 caggcgactg agacaatcaa gatcatcctg ggcgcgccgg atattatggt taaccggctg
     2581 ctgctgttcg acgcgtggcg gatgcgcttt cgggaattga agctgcgcaa gaatccggat
     2641 tgcccggtgt gcggcgacaa tccgacgatc aaagagttaa tcgattacga agaattttgc
     2701 ggaatgactc aacaaccaca ggctacccaa ccaactatgg aagaaatcac agcgactgaa
     2761 ctgaaacaac ggctcgacag cggcgacgac attcaaatca tcgacgtgcg cga
//
LOCUS       DASZZE010000356         1687 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_322763, whole genome shotgun sequence.
ACCESSION   DASZZE010000356 DASZZE010000000
VERSION     DASZZE010000356.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1687)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1687)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1687
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_322763"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1029
                     /locus_tag="VHD88_06875"
     CDS             <1..1029
                     /locus_tag="VHD88_06875"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HVS21552.1"
                     /translation="LRSGYCPVDVCKLTRELIDIPSVTGEESEVGKYLAQLLERLDYK
                     VEMQEVTSGRANVIATTGAPARVVLSTHMDTVPPYIASSEDDEFIHGRGACDAKGIIA
                     AQIAAAEKLRADGVEEIALLFTVDEEATSAGAKEANNHRLASSCRYLINGEPTDNRLA
                     IGSKGSLQVTITTAGRAAHSAYPEQGDSAVEKLLDVLSDIRQIDWPGDDFFGETTCNI
                     GVISGGVRSNVVPAEARASLQIRLTTKAAKIRELIESVVDGRASLEFHSAHDPQRMLA
                     VDGFEQTVVRFTTDIPYLTNWGKALLIGPGSILDAHTAHERVAKRELLQAVEVYRDLA
                     KRLQNRER"
     gene            1093..>1687
                     /locus_tag="VHD88_06880"
     CDS             1093..>1687
                     /locus_tag="VHD88_06880"
                     /inference="COORDINATES: protein motif:HMM:NF013293.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008839 - 4-hydroxy-tetrahydrodipicolinate
                     reductase [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate reductase C-terminal
                     domain-containing protein"
                     /protein_id="HVS21553.1"
                     /translation="MKLALIGYGAMGQLVAKLASEQGHEIGLTLTSRDTNRDFDERVA
                     ELRGCDVAIDFSVAAAVPRNIEMCARANVPLVEGTTGWHAQLDEARNIVQEQDGALIY
                     GANFSVGVQVFYRIAANAAELFQGLESYDAFIEEAHHKRKRDAPSGTALQLGEIVASH
                     LGREVPVSSTRAGYIPGTHRVGFDSSADQITLKHTARG"
BASE COUNT          353 a          450 c          526 g          358 t
ORIGIN      
        1 ttacggtcgg gctactgccc cgtcgatgtt tgcaaactca cgcgtgagtt gatcgacatt
       61 ccctcggtga ccggcgagga atcagaagtc ggaaagtatt tggcgcagtt gcttgagcgg
      121 ctcgactaca aagtcgaaat gcaggaagtg acgagcggtc gcgcgaacgt catcgcgacc
      181 acgggcgcgc ccgctcgcgt tgtgctctca acgcacatgg acacggtgcc gccatacatc
      241 gcttcatcgg aagatgacga gtttattcac ggtcgtgggg cgtgcgatgc gaaaggcatc
      301 atcgcggcgc agatcgctgc tgccgaaaag ttacgggccg acggcgtgga agagattgct
      361 ttgcttttca ctgttgatga agaagcaact agtgcgggag cgaaagaggc aaacaatcat
      421 cgcctcgcgt catcatgccg ttatctgatt aatggtgagc cgactgacaa tcgtttggcg
      481 attggatcga agggatccct gcaagtaacg atcacgaccg cgggtcgcgc cgcgcattcc
      541 gcttatccgg agcaggggga ttccgcggtt gagaagttgc tcgacgtgct ttctgatatt
      601 cgtcagatcg attggcccgg cgatgatttc tttggcgaaa cgacttgcaa catcggcgtg
      661 atttccgggg gcgtccgatc caacgtggtt cccgccgaag cgcgagcgtc tctgcagatt
      721 cgtctgacga ctaaggctgc taagatacga gagctgattg aaagcgtggt tgatggacga
      781 gcatcgcttg agttccattc ggcgcacgat ccgcagcgca tgctcgcggt tgatgggttt
      841 gagcaaaccg tggtgcgctt caccactgac attccgtatt tgactaactg gggtaaggct
      901 ttgctaatcg ggccgggctc gattctggat gcgcacaccg cgcatgagcg ggtggcgaag
      961 agggagttgc tgcaagctgt tgaggtctat cgtgacttgg cgaagaggtt acagaaccgg
     1021 gagcggtagc gaccgggttc tcaaggaaaa accaccccgc tcgctaccgc gagcggttcc
     1081 gtacctggcg cgatgaaact agcattgatc ggatatggcg cgatgggcca gctcgtcgcg
     1141 aaactcgcaa gcgagcaagg ccatgagatc ggcctgacgc taacttcgcg tgatacaaac
     1201 cgcgacttcg atgaacgcgt cgccgagttg cggggttgcg acgtagcgat cgatttttca
     1261 gtcgctgctg ctgttcctcg gaatatcgaa atgtgcgcgc gcgccaacgt gccattggtg
     1321 gaaggcacga ccggctggca cgcgcagctc gatgaggcta ggaacatcgt tcaagaacaa
     1381 gacggcgcgt tgatttacgg tgcgaacttt tcagttggcg tgcaggtgtt ttatcgcatc
     1441 gccgcgaacg cagctgagct gttccagggt cttgaatcgt acgacgcctt tatcgaagaa
     1501 gcgcatcaca agcgcaagcg cgacgcgcct tcgggtaccg cgctgcaact cggcgagatc
     1561 gtcgcgtcac acctgggccg cgaagttccg gtttcgtcaa cccgcgcggg ctatattccc
     1621 gggacgcatc gcgtcggctt tgattccagc gccgatcaaa tcacgctaaa gcacactgcg
     1681 cgcggtc
//
LOCUS       DASZZE010000357         2334 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_207447, whole genome shotgun sequence.
ACCESSION   DASZZE010000357 DASZZE010000000
VERSION     DASZZE010000357.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2334)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2334)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2334
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207447"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..486
                     /locus_tag="VHD88_06885"
     CDS             <1..486
                     /locus_tag="VHD88_06885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21554.1"
                     /translation="TDERHASIFNDEERAAIRAHLPWTRRVRAGKSDYFGEEIDLLEF
                     IAARRERLVLKPNDDYGGHGIYIGWNTDEIAWDAAIHNALGNGDYLVQERVPTAREVF
                     PALKADGTFEFAEQLVDLDPLLFNGKVGSAFTRLSSTELANVSSGGGMVPTFVISKRQ
                     S"
     gene            527..1342
                     /gene="kdsB"
                     /locus_tag="VHD88_06890"
     CDS             527..1342
                     /gene="kdsB"
                     /locus_tag="VHD88_06890"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: protein motif:HMM:NF003950.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008690 - 3-deoxy-manno-octulosonate
                     cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HVS21555.1"
                     /translation="MDHTGSNPQQKVVAVIPARYNSTRLPGKPLLRIGGRPLVAWVVE
                     RALAARTVSRAIVATDDARIFDAVSAAGFEAMMTRGDHASGTDRVAEVARTLDAEIIV
                     NVQGDEPLIEPETIDRAVNALIDDREAEVATTCEPIDDVADVLSPAVVKVVVDNEGRA
                     LQFSRNPIPFPNQGVEWHGSIEAALRKEPALLLTFRKHTGLYVYRREFLLQFTTWPQS
                     ELERRESLEQLRALERGVKIRVVEAASPSIGVDTIEDLERVRAIVERETQMAV"
     gene            1407..1757
                     /locus_tag="VHD88_06895"
     CDS             1407..1757
                     /locus_tag="VHD88_06895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21556.1"
                     /translation="MSAGDWIGIGIVALVIVGGLVLLNQITKPYDVKNEEEFERRKKQ
                     GGRTAGLMGLQQILDPAAKKSVEVQQDLRRGIYDDEEEPDDPPEAGADAREPGRRPNV
                     RESANNSKREIPNA"
     gene            1750..>2334
                     /locus_tag="VHD88_06900"
     CDS             1750..>2334
                     /locus_tag="VHD88_06900"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: protein motif:HMM:NF018158.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HVS21557.1"
                     /translation="MPKYIFVTGGVVSSLGKGLAASSIGCLLEARGLRVTLIKLDPYI
                     NVDPGTMSPFQHGEVFVTDDGAETDLDLGHYERFTHAHLSQSNNWTTGRIYLSVIEKE
                     RRGDYLGKTIQVIPHVTNEIKEAIRSVTADGEADVVIAEVGGTVGDIESLPFLEAIRQ
                     LGNEEGRENALYIHATLVPYIAAAGELKTKPTQHS"
BASE COUNT          534 a          616 c          724 g          460 t
ORIGIN      
        1 accgacgaac gccacgcctc gatcttcaat gacgaagaac gcgcggcgat tcgtgcgcat
       61 cttccctgga cgcggcgggt gcgagcgggc aagagcgatt acttcggaga agagatcgat
      121 ctattggagt tcatcgccgc gcgacgtgaa cggctcgtgc tcaagccaaa tgatgattac
      181 ggtggtcatg ggatttacat cggctggaac acggatgaaa ttgcgtggga cgcggcgatt
      241 cacaacgcgc tcggcaacgg tgattatctg gtgcaggaac gcgttcccac cgcgcgcgaa
      301 gtttttccgg cgctaaaggc tgatggaaca ttcgagttcg ccgagcagtt agttgatctc
      361 gatccgctgc tttttaatgg caaggtcggc tcagcattca cccggctgtc ttcgactgag
      421 ctggctaacg tgtcttccgg cggtggcatg gtgccgacct tcgtaatcag caaacggcag
      481 agctgacatt gacttccgcg ccgatcgcgc gctaacgtgt aatcccgtgg atcacacggg
      541 ctcaaatccc caacaaaaag tagtcgcagt aatccccgcc cgctacaatt ctactcgtct
      601 tccgggaaag cctttattac gaataggcgg aaggccgctc gtggcgtggg tggttgaacg
      661 cgcgttggcg gcgcgcaccg tgagccgcgc catcgtggca actgacgacg cgcgcatctt
      721 tgacgccgtg agcgcagcag gctttgaagc gatgatgacg cgcggcgatc acgcaagcgg
      781 caccgaccgg gtagccgaag ttgctcggac tctcgacgcg gagataatcg tcaatgtgca
      841 gggagacgag ccgttgatcg aaccagagac gatcgatcga gcggttaatg cgctcatcga
      901 cgatcgggaa gcagaagttg cgacgacctg cgaaccgatt gacgatgtcg ccgacgtgct
      961 gagccccgcg gtcgtgaaag tggtggtaga taacgagggc cgcgcgctcc agttttcgcg
     1021 taatccgatt ccatttccta atcagggcgt cgaatggcat ggctcgatcg aagcagcgct
     1081 caggaaagaa ccggcgctgc ttcttacttt tagaaagcac accgggcttt acgtctatcg
     1141 tcgcgagttt cttttgcagt tcacgacctg gccgcaatcg gaactggaac ggagggaatc
     1201 gctggagcag ttgcgcgcgc tcgagcgcgg cgtgaaaatc agagttgtcg aagcggcttc
     1261 gccttcgatt ggcgtggaca cgatcgaaga ccttgaacgt gtacgtgcta ttgtggagcg
     1321 cgaaactcaa atggcggttt agaaggcgga cttgtccgcc acctggggga ttcgcgcaca
     1381 agtgcgctgt ctaaacggtg gagtaaatga gtgcaggcga ctggattgga attggaattg
     1441 ttgcgctcgt gattgtgggc gggctggtcc tactcaatca aatcaccaag ccgtacgacg
     1501 taaagaacga agaagagttt gagcggcgca aaaaacaggg cgggcggacg gcaggattaa
     1561 tgggcttgca gcagattttg gacccggcgg cgaagaaatc agttgaggtc caacaggatt
     1621 tgcgccgggg aatctatgac gatgaagaag agcccgacga cccgccggaa gcgggcgccg
     1681 atgcgcgcga gcctggcaga cgcccgaacg tgagggagag cgcaaataat tcaaaacggg
     1741 agattccgaa tgcctaaata catttttgtg actggcggcg tggtttcaag tctgggcaaa
     1801 ggcctcgcgg cgtcttcgat cggctgcctg ctggaagcgc gcggcttgcg agttacgctg
     1861 atcaagctcg atccttacat caacgtcgat ccgggaacga tgtcgccgtt ccaacatggt
     1921 gaagtcttcg tgaccgatga cggcgctgaa accgatctgg acctcgggca ctacgagcgc
     1981 tttacccacg cgcatctctc gcagtccaac aattggacta cgggccgcat ttatctttca
     2041 gtgatcgaaa aagagagacg cggcgactat ctcggcaaga caattcaggt catcccgcac
     2101 gtcacgaacg aaatcaagga agcaattcgc tcagtcacgg ctgatggcga agctgatgtg
     2161 gtgatcgccg aggtcggcgg caccgtcggc gacatcgaat cactgccgtt tctggaagcg
     2221 atccgccaac taggaaacga agaagggcga gagaacgctc tgtacattca tgcgacgctg
     2281 gtcccgtaca tcgcggccgc gggcgagttg aagaccaagc cgacgcagca ttca
//
LOCUS       DASZZE010000358         2477 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_126699, whole genome shotgun sequence.
ACCESSION   DASZZE010000358 DASZZE010000000
VERSION     DASZZE010000358.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2477)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2477)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2477
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126699"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..603
                     /locus_tag="VHD88_06905"
     CDS             <1..603
                     /locus_tag="VHD88_06905"
                     /inference="COORDINATES: protein motif:HMM:NF015279.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21558.1"
                     /translation="ARATVDAVAILDAAGYQKIIVETVGVGQDEVEIVKTADVCLVVL
                     VPGMGDDVQTMKAGIMEIGDVFVINKADREGVLRTEKELEALLALAVHDEQWQSPIVK
                     TVAIESKGIDDLASAIDRCRESQQNTLVSAERRQAIARWRILELLRERLMKEALNGDS
                     ASEKLDQLAAEVASKRRDPYSAVEEIIQFGVRSLESGRSK"
     gene            677..1078
                     /gene="mce"
                     /locus_tag="VHD88_06910"
     CDS             677..1078
                     /gene="mce"
                     /locus_tag="VHD88_06910"
                     /EC_number="5.1.99.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR03081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA epimerase"
                     /protein_id="HVS21559.1"
                     /translation="MKIDHIGIATHGIDDAAKFWREALGLDIAETEEVAEQKVRVATL
                     PIGESRIELLEATSEDSPISKFLDQRGPGIHHIAVRVDDIRATLAKMKEKGARLIDEQ
                     PRTGAGGCLVAFVHPSSTGGVLLELVQNREP"
     gene            1128..2417
                     /locus_tag="VHD88_06915"
     CDS             1128..2417
                     /locus_tag="VHD88_06915"
                     /inference="COORDINATES: protein motif:HMM:NF025002.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HVS21560.1"
                     /translation="MNSTTKAWIVAAVGIVFSVSLIVWQVKASHGAAINLSPDDMTQI
                     ASDQAPQTRQRLATDDSARKDFAKNVRELLAVAEEARAKGIAYRPDIRRQLELVRAIV
                     ISQSYAESQAGTPGATSISDADIEAFFKESGQEERFQEFLKDAQANNPMMAGQQIPEE
                     QLKQIKHQLGEVLIGERRGTSAGIDRKRSVELQIMLEQARLLASTYAKETLIPNTKAT
                     DAEIDAYIAKHPDLDTKQSRTKAEDVLKRARAGEDFASLAKQFSTDPGSKDKGGDLGW
                     FGKGQMVPEFDKAAFALQPGQISDIVESQFGFHIIKVEERRTETKDGKPEEQVHARHI
                     LIAAGAPNPFGPPKSPKDQARNAVEQEKEKNLIDDIVKRQGAHITIAENFSVPQPPPQ
                     QQMPQGFPPGGPPEAPPSSAPPATKGKPATPPKGAKP"
BASE COUNT          630 a          625 c          755 g          467 t
ORIGIN      
        1 gcgcgcgcca cggtggacgc ggtcgcgatt ctggacgccg cgggttacca aaagattatt
       61 gttgagactg tcggtgtggg ccaggatgaa gtcgagatcg tgaagacggc ggacgtttgc
      121 ctggtcgtgc tcgtccccgg catgggcgac gacgtgcaaa ccatgaaagc cggcatcatg
      181 gaaatcggtg acgtgttcgt catcaacaaa gccgatcgcg agggcgtgtt gcgaaccgag
      241 aaagaattgg aagcgttgct cgcgttggca gtgcacgacg aacagtggca atcgccgatc
      301 gtcaagacgg tggcgattga aagtaaaggc atcgacgacc tggcatcggc gatagatcgc
      361 tgccgcgagt ctcagcagaa tacactcgta tccgcggaac gacgccaggc gattgcgcgt
      421 tggcgaattc tggagttatt acgagagcgg ctaatgaagg aggcgctcaa tggagactct
      481 gcgtcagaga agctcgatca attagcggcg gaagttgcga gcaagcgtcg cgatccgtat
      541 tcggccgtgg aagagataat acagttcgga gtgcggagtt tggagtctgg cagaagcaaa
      601 tgaagagttc tgtaagtggt ccgacttcgg ccctgaacac cgaacaccga acaccgaact
      661 ccgaactgct tgagttatga agatcgatca catcggtatc gctacgcacg gaattgatga
      721 tgcggcgaaa ttctggcgcg aggctctcgg tctcgacatc gccgaaactg aagaagttgc
      781 tgaacaaaaa gtacgcgtgg caacgctgcc gattggtgag tcgcggatag aattgctgga
      841 agcaacgtcc gaagactcgc cgatctcgaa gtttctcgat caacgtggac cgggaattca
      901 ccatatcgct gtgcgagtag atgatattcg cgcgacgctc gcgaagatga aagagaaagg
      961 cgcgcgtttg atcgacgaac agccgcgaac gggcgcgggc ggttgcctag tcgcgtttgt
     1021 tcatccatca tcgacaggcg gagtgttgct ggaactggtg cagaaccgcg agccgtagcg
     1081 agcggtaatc aggcgaaatg atttgacgtg aaaggaaaag gtcaatcttg aattcaacca
     1141 cgaaagcttg gattgtcgcc gcggtcggca tcgttttttc ggtttcgcta atcgtttggc
     1201 aggtcaaagc cagccacggg gcggcgataa atctgagccc cgacgatatg acgcagattg
     1261 cttctgatca ggcgccgcaa acgcggcagc gtttggccac ggacgattcg gcgcgcaaag
     1321 acttcgctaa aaatgttcgc gagttgctgg ccgtcgccga agaagcacgc gcaaaaggca
     1381 tcgcttatcg tcccgacatc aggcggcaac tcgagttagt tcgcgcgatc gtcatttcgc
     1441 agagttatgc tgaatcgcaa gcgggcacgc cgggagcgac gtcaatctcc gacgcggaca
     1501 tcgaggcctt tttcaaagag tcgggacagg aagagcgctt ccaggaattc ctgaaggacg
     1561 ctcaagcaaa caatccgatg atggccgggc aacaaattcc cgaggaacag ttaaaacaga
     1621 ttaagcatca gttgggtgaa gtgctgatcg gcgagcgacg cggcacatcc gcgggcatcg
     1681 acagaaagcg cagcgttgag ttgcagatca tgctcgagca agcgaggttg ttggcatcga
     1741 cttacgcgaa agaaactctt attccgaata ccaaggcgac cgacgcggaa attgacgctt
     1801 acatcgctaa gcatcccgat ctggacacga agcaatcgcg gaccaaagcg gaagacgtgc
     1861 tgaagcgcgc gcgtgccggc gaagactttg cctcgctcgc aaagcagttt tcgaccgatc
     1921 caggcagcaa ggacaaaggc ggcgatcttg gttggttcgg aaaagggcag atggtgcctg
     1981 agtttgataa ggcagctttc gctttgcagc cgggacaaat cagcgacatc gtcgaaagcc
     2041 aatttggttt tcacataatc aaagttgaag agcgccgcac tgaaacgaaa gacggcaagc
     2101 cggaagagca ggtacatgcg cggcacattc tgattgcggc cggcgcgccg aatccctttg
     2161 gtccgccaaa gtctccgaaa gatcaggcac gcaatgccgt cgagcaggaa aaagaaaaga
     2221 acctgatcga cgacatcgtg aaacgccagg gcgcgcacat taccatcgcg gagaattttt
     2281 ctgtacccca gccgccaccg cagcaacaga tgccgcaagg gtttccgcct ggcggaccac
     2341 ctgaagctcc gccatcttca gctccacctg caacgaaagg aaagccggca acgccgccga
     2401 aaggcgcgaa gccgtagttg attgaagagc gatgcagttt ggcgattatc gcgtcgaggt
     2461 aattcctgat tgtgagt
//
LOCUS       DASZZE010000359         2784 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_207487, whole genome shotgun sequence.
ACCESSION   DASZZE010000359 DASZZE010000000
VERSION     DASZZE010000359.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2784
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207487"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(150..1484)
                     /locus_tag="VHD88_06920"
     CDS             complement(150..1484)
                     /locus_tag="VHD88_06920"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HVS21561.1"
                     /translation="MKFASWVIVVLSLTFLVSIATAQSSRNQQRPREQKPAETKAAEP
                     KTAERQPEAPNEQEVETLKIDTNLVTVPVIASSRSGKYIADLKREEFKISEDGVAQEV
                     AFFATVSAPFHVVLMLDTSASTEEKLGQIQQAARDFVDQLSPADRVKVVSFDTEVRDL
                     NEFTSDKSTLRSGIRQTRSGTGTRLYDAVQYSLDVLRPINQRRAIVIFTDGVDWHSDN
                     ATFEATIRGLDESGVIVYPIRFDTRAETERIARKQEAEQNGAQLPTIDVIRQPRTGTT
                     PRTFPSDEPFPVPPGQTPRSTLPLPDPSVIFGRGRGNPNPPDPRSTTDPFPDPRSRQP
                     GSTYPPLRPPDDRRRDDSLSAMLDQLYLMADSYLKELADRSGGQVYRADNVGVLPQAF
                     AGIAAELRTQYLLGYYPSNAARDGGYRKIQVKTSRKDIAIRARPGYRARSGG"
     gene            1802..2410
                     /locus_tag="VHD88_06925"
     CDS             1802..2410
                     /locus_tag="VHD88_06925"
                     /inference="COORDINATES: protein motif:HMM:NF020893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HVS21562.1"
                     /translation="MEFLHNSLQLIEHYMLAYGYWAIFFGVMLENAGLPVPGETILLV
                     AGYFAATGEFHLVLVMLVATTGAVIGDNIGFALGHHYGRGFLLRFGRFVLLTPKRIEH
                     LEGYFTRYGNKTILVARFIFGLRVVGALLAGASNMRWRVFVVYNVAGAILWASVITTL
                     GYLFGQSLPLLVKWVGRSGTILLIAAILIGLIVWRVRKHQKE"
     gene            2495..>2784
                     /locus_tag="VHD88_06930"
     CDS             2495..>2784
                     /locus_tag="VHD88_06930"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HVS21563.1"
                     /translation="MKGRVLIIDSDREYSDALRDQLKTLGYEVLAETNNSSAVEVAET
                     FSPSVIITDTLERGRDAFALLREIRASQPHTPIILAANNSSVETALRAIQEEG"
BASE COUNT          556 a          780 c          797 g          651 t
ORIGIN      
        1 cccttctccc tttgggagaa gggctgggga agagggagcg tagccgttgg agtggggcgc
       61 gatactcaag ccctctcccc gaccctctcc cgatgggaga gggagtaggt ttgcaatgga
      121 tgagcgctgg ctcgtcagcg cactccaact tacccgccgc tgcgcgcgcg gtagccgggt
      181 cgcgcgcgaa tcgcgatgtc tttgcgagat gtcttgacct gaatcttccg atagccgcca
      241 tcccgcgccg cgttgctcgg gtaataaccc agcaagtatt gcgtgcgcaa ctcggccgcg
      301 atgccggcga aggcttgcgg caggacgccg acgttgtccg cgcgataaac ctgccctcct
      361 gatcgatcgg caagctcttt caggtaactg tccgccatta aatacagttg atccagcatg
      421 gcgctgaggc tgtcgtctct gcgccggtca tcgggagggc gcaaaggtgg ataagttgat
      481 ccgggttgac gcgatctggg atccgggaag gggtcggtcg tcgatctggg atcaggcgga
      541 ttcgggtttc ctcggccccg gccgaagatc actgaaggat ccggcagcgg cagagtgctt
      601 ctcggcgttt gccccggagg caccgggaaa ggttcatcgc tcggaaaagt tcgcggcgtg
      661 gttccggttc gaggttgccg aattacgtcg atcgtcggta gttgcgcgcc attctgctca
      721 gcctcttgct tccgagcaat ccgttccgtc tcagcccgcg tgtcgaagcg aatgggatac
      781 acgatcacac ctgactcatc cagaccgcga atcgttgcct caaacgttgc gttgtcgctg
      841 tgccagtcca cgccgtcggt gaaaataacg atcgcccggc gctgattgat gggacgcagc
      901 acatccagtg agtactgcac cgcgtcatac aacctggttc ccgtgccaga gcgcgtctgc
      961 cgaatgccac tgcgtagagt cgatttgtca ctcgtgaact cgtttaggtc acggacttcg
     1021 gtatcgaacg aaaccacttt cactctgtcc gcggggctga gttgatcgac gaagtcgcgc
     1081 gctgcctgct gaatctgtcc tagcttttct tcagtgctcg cgctggtgtc caacatgagc
     1141 acaacatgaa aaggcgcgct gacggtcgcg aagaacgcaa cctcctgggc cacgccatct
     1201 tccgaaatct tgaactcttc tctcttcaaa tcggcaatat atttgccgga gcgcgaactt
     1261 gcgattacgg gaacagtgac gaggttggta tcgatcttga gcgtctcgac ctcctgctcg
     1321 ttgggagctt cgggctggcg ctccgcggtc ttcggttctg ctgccttcgt ctccgctggt
     1381 ttttgctcac gcgggcgctg ttggttgcgc gatgattgcg cggtcgctat cgacacaagg
     1441 aacgtcagac tcagaacgac aattacccaa gatgcgaatt tcatgacgac tttctcagga
     1501 attgaaactg tgcggcgcgg tcatcggtgc gcgaatcctg agcgcataga ctgttagtaa
     1561 cgtcttgggg agaagccgac gccattctaa acccgctccc acatttcacc aagcgtagaa
     1621 atcagttaca ggtttggtct catcaacacc tcgcttcagc gaggtgacgc gagaaccaac
     1681 acaatcgctt agccgtttca acggcttagg aggcaaaccg ttgaaacggt ttcgtgattt
     1741 cgatttcacc cctcagtcac cttgctgaag caacgtgtta atgagataaa gttgatcaaa
     1801 catggaattc ctgcacaact cgcttcagtt gattgagcac tacatgctcg cttacggcta
     1861 ctgggcgatc tttttcggcg taatgctgga gaacgcggga ttgccggtgc cgggtgaaac
     1921 gatcttgctg gttgcaggat actttgcggc aactggagaa tttcacctcg tgctggtcat
     1981 gcttgtcgcc accaccggcg cagtcatcgg cgacaatatc ggtttcgccc tcggtcatca
     2041 ttacggtcgc ggcttcctgt tgcgcttcgg tcggtttgtc cttctcacgc caaagcggat
     2101 cgaacacttg gaaggctatt tcacgcgcta cggaaacaag acaattcttg tcgcgcgctt
     2161 cattttcggc ctgcgcgtgg ttggcgcatt gttggcggga gcttcgaaca tgcggtggcg
     2221 cgtgttcgtc gtttacaacg ttgcgggcgc aattctctgg gccagcgtaa tcacgacact
     2281 gggttatcta ttcggccaga gcttgccttt gctggtgaag tgggttggcc gcagtggcac
     2341 gattctcctg attgctgcga ttctaattgg cctaattgta tggcgcgtcc ggaaacatca
     2401 aaaagagtaa aggcgtcaag ccatcgcgga tcactttctc gcggattcgg tgagcttcaa
     2461 ccgagcttcc acgccgtatg ctaaactgat ctcgatgaag ggccgcgttc tgattatcga
     2521 cagcgatcgt gaatactccg acgctctgcg cgatcaactg aagactctcg gctacgaagt
     2581 tctcgcggaa acaaataatt cttccgcggt agaagtcgca gagacctttt ctccgtcagt
     2641 aatcatcacc gacacattgg agcggggccg cgacgcgttc gcactgctga gagagattcg
     2701 cgccagccaa ccgcacacgc cgatcatcct cgcggctaat aacagctcag tggagaccgc
     2761 tcttcgcgcg attcaggaag aggg
//
LOCUS       DASZZE010000360         4097 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_10453, whole genome shotgun sequence.
ACCESSION   DASZZE010000360 DASZZE010000000
VERSION     DASZZE010000360.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4097
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10453"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..877
                     /locus_tag="VHD88_06935"
     CDS             <1..877
                     /locus_tag="VHD88_06935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21564.1"
                     /translation="RPRSAKGQRAFSGRLACSSRSEYDFGIRTSLWIMSASDQPGKLT
                     ARDRRAAQLWQWAPWLAFLIVTVSPPATFGLASLLSATNATVYLLLAFSSFPFSLITA
                     IIVATILLLFRRSWAKRVRERLASDGITADEVAWFLAELTGGERRALKEMERRQPLLA
                     DAYRETLALRLNASRLVASARRDLLLVDRRINRSRYLSAPDTAVLIEELGRDRARLEA
                     IKQEGSSRRAEAEARLQMIEAAASRGASWAETNYMLQRLDEGRKHMPLGLEVARAEQQ
                     IREDTERELRKELTQ"
     gene            922..1365
                     /locus_tag="VHD88_06940"
     CDS             922..1365
                     /locus_tag="VHD88_06940"
                     /inference="COORDINATES: protein motif:HMM:NF014608.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HVS21565.1"
                     /translation="MSAKETKATIRFAGNDFFVGVTPSGHAQAIETDSERASAATPME
                     LLLIALGGCSGVDVVSILKKKRQHVTDYRIEVSGERREEHPRSYKRLFVKHIVRGRDV
                     SAQAVARAIELSDQKYCSVAATLRGSAEIVTSYEIVEEDRVNEPA"
     gene            1352..2776
                     /locus_tag="VHD88_06945"
     CDS             1352..2776
                     /locus_tag="VHD88_06945"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HVS21566.1"
                     /translation="MSPPERASLLKLFCVCIVLAIASHAYSQSASDAALNAVRNSDRV
                     ERARKQLVRISVAEHARRAAIYMLNREFAEAREHWQALIDNYPNDVNVPAALYGIARS
                     YFIERRYEEARQTYERLAHDYPQTKEGREGLNFSASSLLRMGRGAEAAARYQEYLEKY
                     PNGERIDTAHLNIIDGYREAGRSQDAIAWIDRTRERFAGTATDMNALFARFRLDIALA
                     DWQHAVQSADELLGKPLPTGTNTNADELLYMKAHCLEREGLMPDAIRTYLLIPDNVNS
                     YYGVLASSRIAAIGDAAARQRAAERAQSSQFAIAAAEADYPAPYRWQIVNEAKKRGLD
                     PRLILAIMKQESRFKPNAKSPSAARGLLQLTFDAAQKYAKRAGVNQLTEDSLYLPGTS
                     IAIGCEYLGQLSRMFAGLPEAIAASYNGGEDNVARWLARSNQNDEGVFVAEVGFSETK
                     NYVFKVMTYYRAYRQLYDANLKRR"
     gene            complement(2854..3813)
                     /locus_tag="VHD88_06950"
     CDS             complement(2854..3813)
                     /locus_tag="VHD88_06950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21567.1"
                     /translation="MWKRFLTGLSLTMAVVVLAGLAFRYGTPNVQAFKGAGADSTAEG
                     MDSEPVVMENGFSVELLVDGRPLAEYAARGRRYVEALENAEYEVRIHNPYGTRVAVAL
                     SVDGLNTIDARHTSAWDAHKWVIEPYGTISVRGWQMSSDNARRFYFTTERDSYAAKLG
                     QTANLGVISAVFFRERKPFTILPVTPSPREPRPTYKEEDRVKQDRMKDERSAPESNAG
                     EETRASGEGGRDAAKQRSAQPYPPLDDESAATGIGRSVRNDVQWIKMDLDSRPAGEIM
                     IRYEYRAALVRLGIIPRDYPRPEVLDRRERAQGFEPRYCPQPF"
BASE COUNT          872 a         1199 c         1190 g          836 t
ORIGIN      
        1 acggccgcgc tcagccaaag gccagcgcgc gttttcggga cgattggcct gcagttcgcg
       61 gtcagagtat gatttcggca tccgcaccag cctttggatt atgagcgcaa gcgatcaacc
      121 cggcaaactt acagctcgcg accgtcgcgc ggcccaattg tggcaatggg cgccgtggct
      181 ggccttcctg atcgtaacgg tcagccctcc agctacgttc gggctcgcgt ctttgctgag
      241 cgcgaccaac gcaactgttt atttgttgct ggccttcagt tcatttccct tttcgctgat
      301 caccgcgatc atcgtcgcaa cgatcctgtt gctgtttcga cgtagctggg cgaaacgagt
      361 gcgtgagcgg ctggcatccg acggcatcac cgccgacgaa gtcgcatggt tcctggcgga
      421 actgaccggc ggcgagcggc gcgcgctcaa ggaaatggag cggcgacagc ctttgctggc
      481 cgacgcttat cgcgaaacgc tggcgctgcg tttgaacgca tcgcggttag tcgcaagcgc
      541 gcgccgcgat ttgctgctgg tcgatcggcg cattaatcgg tcgcgatatt tgagcgcgcc
      601 tgacaccgcc gttttgatcg aagagttggg tcgggatcgc gcacgcctgg aagccatcaa
      661 gcaagagggt tcttcgcggc gcgccgaagc cgaggcgcgc ttgcagatga tcgaagccgc
      721 cgccagtcga ggcgcgagct gggcggaaac aaattacatg ctgcaaagac tcgacgaagg
      781 acgaaagcac atgccgctgg gtctcgaagt cgcgcgcgcg gaacaacaga ttcgcgaaga
      841 caccgaacgc gagctgcgca aagaactcac tcagtgaaaa ccatgttatt cttttcttga
      901 atcatttgag tcgcgatcac aatgtccgcc aaagaaacga aagctaccat ccgttttgcg
      961 gggaatgatt tcttcgtcgg cgtcactccg tcgggacacg ctcaggcaat cgaaaccgat
     1021 tcagagcgcg cgagcgcggc cacaccgatg gagttgctgc taattgcgct gggaggttgc
     1081 agcggcgtgg atgtcgtctc aattttgaag aagaagcgac agcacgtcac cgactatcgc
     1141 atcgaagtga gcggcgagcg gcgcgaagag catccgcgca gctacaagcg tcttttcgtc
     1201 aaacacatcg tgcgcggccg tgacgtttct gcgcaggcgg tggcgcgggc catcgagttg
     1261 tcggatcaga aatactgcag cgtggcggcg actctccgcg gcagcgctga gattgttacc
     1321 agctatgaga ttgtggaaga ggatcgagtg aatgagcccg cctgaacgcg catcgcttct
     1381 caaattattc tgtgtttgta tcgttctcgc cattgcttcg catgcctact cgcagagcgc
     1441 cagcgacgca gccctcaacg cggtccgcaa cagcgaccgg gtcgagcgcg cgcgcaagca
     1501 acttgtccgg atttccgtag ccgagcatgc gcgtcgcgcc gcaatctaca tgctcaaccg
     1561 cgagttcgcc gaagcgcgcg agcactggca agcgttgatc gataattatc cgaacgacgt
     1621 taacgtgccc gctgcactct acggcatcgc gcgctcttac ttcatcgagc gacgttacga
     1681 agaggcgcgt cagacttacg aaagactggc gcacgactat ccgcagacta aggaaggccg
     1741 cgaaggtttg aatttctcgg cgtcgtcgct actgcgcatg ggccgcggcg cggaagcagc
     1801 cgcgcgctat caggagtacc tcgaaaagta tcccaacggc gagcgcatcg acaccgcgca
     1861 tttgaatatt atcgacggct accgtgaagc tggacggtcg caagacgcga tcgcgtggat
     1921 cgatcgaacg cgagaaagat ttgccggcac cgcgacggac atgaacgcgc tcttcgcgcg
     1981 attcagactg gacattgctt tagctgactg gcagcacgcg gtgcaaagcg cggacgaact
     2041 tctgggcaaa cctcttccca ccggcacgaa cacaaacgca gatgaattgc tttacatgaa
     2101 agcgcactgc ctggagcgcg aaggcctgat gccggacgca attcggactt atctgctgat
     2161 tcctgacaac gtcaattctt actacggcgt attggcaagt agtagaatcg ccgcgattgg
     2221 cgacgctgcg gcgcgtcaac gcgcagcaga gcgggcccag tcctcgcagt tcgcgatcgc
     2281 ggccgcggaa gcggattatc ccgcgcctta tcgttggcag attgttaatg aagcgaaaaa
     2341 gcgcgggctc gatccgcgac tcatacttgc gatcatgaag caggaaagcc gtttcaagcc
     2401 gaatgctaag tcgccctcgg ctgcgcgcgg tcttctgcaa ctcacgttcg acgccgctca
     2461 aaaatatgcg aagcgcgccg gcgtgaatca acttaccgaa gactcgctgt acttgcctgg
     2521 cacatcgatc gcaatcgggt gcgagtacct cggccaactg tcgcggatgt tcgcgggatt
     2581 gcccgaagca atcgcagctt cctacaacgg cggcgaagac aacgtggcgc gctggctcgc
     2641 tcgctcaaat caaaacgacg aaggcgtgtt cgtcgccgaa gtgggattct cagaaacgaa
     2701 gaattacgtt ttcaaagtaa tgacgtacta tcgcgcctat cggcaactgt acgacgcgaa
     2761 tttgaagcga cgatgagaga gagacggtcg cgacggatga ccgccgaccg cccgtagtcc
     2821 tttccccttt gcgctttgcc ctttgccccg gtttcagaac ggctgtggac aataacgcgg
     2881 ctcgaaacct tgcgcgcgtt cccgacgatc gagcacttcc ggccttggat aatcacgcgg
     2941 aatgattccc agtcgcacca gcgccgcacg atattcgtag cgaatcatga tctcgccggc
     3001 tggtcgcgaa tccagatcca tcttgatcca ctgcacgtcg ttgcgcaccg aacgaccgat
     3061 gccggttgct gctgactcgt catcgagcgg cggataaggt tgcgcgctgc gctgcttggc
     3121 agcatcgcgt ccgccttcgc ccgaagcacg tgtctcttcc cctgcattcg attcaggcgc
     3181 tgatctctca tccttcatgc gatcctgttt cacgcgatcc tcttctttgt aagttggtcg
     3241 aggctcgcgt ggcgagggcg tgaccggcag aatcgtaaag ggcttgcgct cgcgaaagaa
     3301 tactgcggag atgacgccga ggtttgctgt ctgaccaagc tttgccgcgt aagaatcgcg
     3361 ttcggtcgtg aagtaaaatc ggcgcgcgtt gtccgaactc atctgccaac cacgcacaga
     3421 gatcgtcccg taaggctcaa tcacccactt gtgcgcatcc caggcgctgg tgtgtcgcgc
     3481 gtcgatcgtg ttaagtccgt caacggacag cgccaccgcg acgcgcgtgc cgtacggatt
     3541 gtgaatgcga acttcgtact cagcgttctc cagcgcctcg acgtaacggc gaccgcgcgc
     3601 tgcatactcc gccagcggac gaccgtccac caacagttca accgagaatc cgttttccat
     3661 gacgaccggc tctgaatcca ttccttcggc agtcgaatcc gcccctgcgc ctttgaatgc
     3721 ctgcacattt ggtgtgccat acctgaaagc caggccggcc aggaccacga cggccatcgt
     3781 caagctgaga cccgtcaaaa atcttttcca catcgatttg ctctccttct tggcgagaat
     3841 aacttcagtc gattgcagaa cgcctggatt ccatggttct tgcgcggaaa tctccgggac
     3901 aagctggcgt ttgggaaaaa atcacgaggt ttcgagatct tgtttgagta attatgcgcc
     3961 gccgggatag aatggcgcga cgtttttttg gttggtatcg cttgacgagc gagcacgggt
     4021 gggtttcaat ggccgcggaa aacgaagcca ggcccgcagg attcaatggc cgaatacgta
     4081 ctgacagcaa ccaagag
//
LOCUS       DASZZE010000361         2253 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_193800, whole genome shotgun sequence.
ACCESSION   DASZZE010000361 DASZZE010000000
VERSION     DASZZE010000361.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2253
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_193800"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..337
                     /locus_tag="VHD88_06955"
     CDS             <1..337
                     /locus_tag="VHD88_06955"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF017200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="S16 family serine protease"
                     /protein_id="HVS21568.1"
                     /translation="TGRRVRPDTSMTGEITLSGLVFPVGGIKEKVLAAHRAGIHRIIL
                     PARNEADLEDIPEDVRRELELVPVTRINEVVDAALEKLVANPPPPLPIVNGARPREPE
                     AEPLMAKER"
     gene            complement(431..>2253)
                     /locus_tag="VHD88_06960"
     CDS             complement(431..>2253)
                     /locus_tag="VHD88_06960"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HVS21569.1"
                     /translation="TSPQSSSSPRWSPYGKSLAFLSSRPEATTAASPAATPAEQPRAQ
                     VYLLSMNGGEARRVTNLKNGVSTFRWSPDGTRLVVVSRVGPSDSRADNKDRSDVRHYK
                     NSSYKFNDTGWFDDRRTHLWTVDVKTGSAKQIIEGNDWNDSDPQWSPDGTRIAFVSNR
                     SGKEYDENRNTDVWVISAEGGPLTKISDHDEADNQPRWSPDGKWIAFTGEVHDRDHPK
                     IWLAPATGGAPSTLAANGLDLIPGGLEWSDDGKSLYFETGVKGENHLFRVDVTTKSVA
                     QITSGARAVRGVDFNFHSSTMVYLSNDFKHLDNLFAADLNGRSERELTNLNEALWKQL
                     QLADVERFTYKSADDWDIDGFLAKPIGWQEGKKYPLILSVHGGPAGQYGVDWYQEFQV
                     YAAKGYAVLFTNPRGSTGYGQKFERGITGEWGGKDYLDVMNGVDAALKKYSWIDADRM
                     GVTGGSYGGFMTNWILGHTDRFKAAVTLRSLSNFISDDGTRDGAYGHSPDFGGDIFQK
                     FDLYWERSPLKYAKNVKTPTLILHSDNDYRVPIEQGEQWFRALKHFGVTTEIVFFPRE
                     NHNLTRTGEPKHLIESMNWQLYWFDRYLNGNTSALPPDQK"
BASE COUNT          464 a          681 c          629 g          479 t
ORIGIN      
        1 caccggtcgt cgcgtccgcc ccgacacgtc gatgactgga gagataactc tctcgggcct
       61 ggtattcccg gtaggcggca tcaaagaaaa agttttggcc gcgcatcgcg ccggcataca
      121 tcgcatcatc ctgcccgcgc gcaatgaagc cgacctcgaa gacattcccg aagacgtgcg
      181 ccgcgagctg gagctcgttc cggtcacgcg catcaacgaa gtcgtcgatg ccgcgctgga
      241 aaagttagtt gcgaatccgc cgccaccact gccgatcgtc aacggcgcgc gcccgcgcga
      301 gcccgaagcc gagccgttga tggcgaaaga gcggtagagc tgcgttggat gatcgcgcaa
      361 gcgaaagaca ggctggacga gatcaagtga gtcagtaccg cccgctaccg caggcggttc
      421 tgacaaatat ttacttctga tccggcggca aggcgctcgt gttcccgttc agataccgat
      481 cgaaccagta gagctgccag ttcatactct cgatcagatg tttcggctcg ccggtgcgcg
      541 tgaggttgtg gttctcccgc ggaaagaaaa caatttccgt cgtcacgcca aagtgcttca
      601 aagcgcgaaa ccattgctca ccctgctcaa tcggcacgcg atagtcgttg tctgaatgca
      661 aaatcaacgt cggtgtcttg acgttcttcg cgtacttcaa aggcgaacgc tcccaataaa
      721 gatcgaactt ctggaagatg tcgccgccaa agtcagggga gtggccgtaa gcgccgtcgc
      781 gcgtgccatc gtcggaaata aagtttgaga gactgcgcag cgtcaccgcc gctttgaaac
      841 gatcggtgtg gccgaggatc cagttagtca taaagccgcc atagctgcca cccgtcacgc
      901 ccatgcgatc cgcgtcgatc catgaatact ttttcagcgc cgcatccaca ccgttcatca
      961 cgtcgagata atccttgccg ccccattcac ccgtgatccc gcgttcgaac ttctgaccat
     1021 agccggttga gccgcgcgga ttcgtgaaca gcaccgcata gcctttcgcc gcgtaaacct
     1081 gaaactcctg gtaccaatcg acgccgtatt gtccggcggg cccgccgtgt acgctaagaa
     1141 tcagcggata ctttttgcct tcctgccagc cgatcggctt cgccagaaaa ccgtcgatgt
     1201 cccagtcgtc ggcgctcttg taagtgaaac gctcaacatc ggcgagttgt agttgcttcc
     1261 acaacgcttc attcagatta gtaagctccc gttcgctgcg gccgttgaga tcggcggcaa
     1321 acaaattatc gaggtgcttg aaatcgttgg agagataaac catcgtgcta ctgtgaaagt
     1381 tgaaatcgac gcctcgcacg gcgcgcgcgc cggaggtaat ctgcgccacc gatttcgttg
     1441 tgacatcgac gcggaacaaa tggttctcgc ctttgacgcc agtttcgaaa tagagagatt
     1501 tgccgtcgtc tgaccattcc agtccgccgg gaattagatc caggccattc gccgccagcg
     1561 tcgatggcgc gccgccagtc gcaggcgcca accaaatctt cggatgatcg cgatcatgaa
     1621 cttcgccggt gaaggcaatc cacttgccgt cgggcgacca gcgcggttga ttgtcggctt
     1681 cgtcgtggtc ggaaatcttc gtgagcggtc cgccttcagc gctgataacc cacacatcgg
     1741 tgttgcgatt ctcgtcgtac tcttttccgc tgcgattcga aacgaaggcg atccgcgttc
     1801 catccggcga ccattgcggg tcgctgtcgt tccaatcgtt gccttcaatg atttgtttcg
     1861 cgctgcctgt cttcacgtca acggtccaca aatgcgtgcg ccgatcgtcg aaccagccgg
     1921 tgtcgttgaa tttgtaggaa gagttcttgt aatgacgcac gtcgctacga tctttgttat
     1981 cggcgcgact gtcgctgggc ccaacgcgac tgacgaccac caagcgcgtc ccgtccggcg
     2041 accagcgaaa cgtgctcacg ccgttcttca ggttcgtgac gcgccgggct tcaccgccgt
     2101 tcatcgacag caaataaacc tgagcgcgcg gttgttcagc aggtgtcgct gccggcgatg
     2161 cggccgtcgt cgcttccggc cgcgacgaga gaaaggcgag cgactttccg tagggactcc
     2221 agcgcggcga gctcgatgat tgcggcgaag tcg
//
LOCUS       DASZZE010000362         1674 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_127205, whole genome shotgun sequence.
ACCESSION   DASZZE010000362 DASZZE010000000
VERSION     DASZZE010000362.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1674)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1674)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1674
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127205"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..650)
                     /locus_tag="VHD88_06965"
     CDS             complement(<1..650)
                     /locus_tag="VHD88_06965"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HVS21570.1"
                     /translation="MTDDRVTSQPETTSLTFSVSPADTGERLDAFLAARIEGWSRARL
                     QRLIENADVLVNGGVSKPSHKLRANDHIEIELTPTQSTSFAPEDIPIEVVYEDDDLIV
                     VNKPAGLVVHPAAGIDSGTMANALAFHFQQLSTVGGAARPGIVHRLDKGTSGLLVVAK
                     TESAHEHLADQFRAREVFKSYVALVHGQIENETGEIDQPIARDPRNRTRMAVVRAGR"
     gene            complement(647..1255)
                     /locus_tag="VHD88_06970"
     CDS             complement(647..1255)
                     /locus_tag="VHD88_06970"
                     /inference="COORDINATES: protein motif:HMM:NF012787.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HVS21571.1"
                     /translation="MKKFMLILFALILTPAAIRAQGNHEYSPVQEKTVNYKTWTLNDL
                     SSNKPVALRLLMQGKKLVMVLYFASWCPNWHNEAPVAASLYEKYKAQGFEIVGVSEYG
                     SRDDVKTFFGPAGAPYPVVSESESRDDREKTPHYGYRQLTGDTRRWGSPWNIFLEPAK
                     CSSGDVLTEKAWIVNGELIEADADKFIHDRLAANAVITPCKQ"
     gene            complement(1296..>1674)
                     /locus_tag="VHD88_06975"
     CDS             complement(1296..>1674)
                     /locus_tag="VHD88_06975"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HVS21572.1"
                     /translation="GRVVLLNFWATWCVPCRGEIPEFNAMQKELQARGFSIVGASVSP
                     VDTADAIRSFQKDVKQEYTVIRGAEEIGAKFGNGPGLPVTYLLDREGRIRQKFIGQTS
                     RENFEAAIKPLLDEAPATAQRVE"
BASE COUNT          333 a          477 c          480 g          384 t
ORIGIN      
        1 cggccagcgc gcaccacggc catgcgcgtg cggttgcgcg ggtcgcgtgc gatgggttga
       61 tcgatttcgc cggtttcatt ttcgatttgt ccgtggacca gcgcgacgta ggacttgaaa
      121 acttcccgtg cgcgaaactg atccgccaga tgttcgtgcg cgctttcggt ttttgctacc
      181 acgagcaagc ccgaagtgcc tttgtccaga cgatgaacga tgcccggtcg cgccgcaccg
      241 ccgacggttg agagttgctg aaaatgaaac gcgagcgcgt ttgccatcgt gcctgagtcg
      301 atgcccgctg ccggatgaac cacgagcccc gctggcttgt tcaccacgat caaatcatcg
      361 tcttcgtaaa caacttcgat gggaatgtct tcaggcgcga aggaagtgga ctgagtcggc
      421 gttaactcaa tttctatgtg gtcgtttgcc cgcagcttat gcgaaggctt tgagacgccg
      481 ccgttgacga gcacgtcggc gttttcgatc agccgctgca aacgcgcgcg gctccagcct
      541 tcgatgcggg cggcaagaaa cgcgtcgagg cgctcgcctg tatcagccgg cgagacagaa
      601 aaagtcagcg aagtagtttc gggttgagat gtgacgcgat cgtcggtcac tgcttgcacg
      661 gcgtgatcac ggcgttggcg gcgaggcgat cgtgaatgaa tttgtccgcg tcggcttcga
      721 taagttcacc gttgactatc catgcctttt cggtgagcac gtcgccgctg ctgcactttg
      781 cgggctcgag aaagatgttc cacggcgaac cccaccggcg cgtgtcgccg gtgagctgcc
      841 gataaccata gtgcggtgtc ttttcacggt cgtcgcgtga ttctgactcg ctaactaccg
      901 gatacggcgc gcccgccggg ccaaagaaag ttttcacgtc gtcccgtgat ccatattcgc
      961 tgacgccgac aatctcaaag ccctgcgcct tgtatttctc gtacagactc gcggccaccg
     1021 gcgcttcgtt gtgccagttc ggacaccacg acgcaaagta aagcaccatg accagcttct
     1081 tgccctgcat cagcaaacgc agagccacag gcttgttact ggaaagatca ttgagcgtcc
     1141 aggtcttgta gttgacagtc ttctcttgta caggcgaata ctcatgattg ccttgcgcgc
     1201 gaatcgcggc gggagtgaga atcagcgcga acaaaattag catgaacttt ttcatttgtg
     1261 ttactccaat caaatctcaa aagcctggtt gtgtgtcatt cgactctttg cgccgtcgcg
     1321 ggtgcttcgt cgagcaatgg tttgattgcc gcttcgaaat tctcgcgcga cgtttgcccg
     1381 ataaacttct ggcgaatgcg gccttcgcga tcgagtaggt aggtgaccgg caaaccggga
     1441 ccgttgccaa acttcgcgcc aatttcctcg gcgccgcgga tgaccgtata ttcctgcttc
     1501 acgtctttct gaaaactacg aatggcgtca gcggtgtcca caggagagac ggatgcgccc
     1561 actatggaga agccgcgcgc ctgaagctcc ttttgcatgg cgttgaattc gggaatctct
     1621 ccgcggcaag gaacgcacca tgtcgcccag aagttcagca ggaccacgcg tcct
//
LOCUS       DASZZE010000363         3924 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_237468, whole genome shotgun sequence.
ACCESSION   DASZZE010000363 DASZZE010000000
VERSION     DASZZE010000363.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3924)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3924)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3924
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_237468"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2288)
                     /locus_tag="VHD88_06980"
     CDS             complement(<1..2288)
                     /locus_tag="VHD88_06980"
                     /inference="COORDINATES: protein motif:HMM:NF014516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006302 - double-strand break repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HVS21573.1"
                     /translation="MFKLRRLEITGFKSFADHTDLIFTGEGITAVVGPNGCGKSNVAD
                     AIAWVLGEQRVKHLRGAEMKDVIFQGSRNRPPSGMSEVILHLVRDEDVEREPDIEDID
                     STLEQLDEHSAVFEPVEASAPTSESVEPAALSEEPIEAISITADQSEAIASPNDVAAQ
                     PQSRTPTHHRHWRRRNLALEFAPGEAVSVTRRLYRSGESEYLLNDRPCRLRDIQDLFS
                     GTGLSGGHYAIIEQGRIGQILSAKPMDRRTLIEEAAGITKFRVRQRAAEARLESARSN
                     LSRLSDIISEIERQVNSLRRQAAKARRYRILREELRELLRRVYVGEERSLAALLEQTQ
                     AELDSATEDDQRLAAELAEREESSRAATQDARSLEDELSKVRAAVADAALQRDRRIRE
                     RDYQSEQIEALTKRRAEIQKEAEALSARLLTIESELERLRQLDVRLNTENEHTTGALH
                     LAEEAHGRKLAEVAKTEDEIESSRAELLTHTAAAERLSELARQLENALEKLTQQAEGL
                     TRESERAAAAHAERSAEATKLNQQILAAREKLARMVSEREAAVKTVVEGHERVSDTDA
                     EQTRIRDEHSRALHRLESFKELDQRRAHYSLAVQEAFSANEREDFHLIGTLADAMQVD
                     ERFERAVEGVFGSSLQSILVPTPDDAIRAASWLKDNQAGRATFLVTGFHGGSDETNVI
                     TFAGEATSTAARRQYVPVGIDGPRIGNILNAPPELLQVLERTLPERMNACVVDTLDDA
                     TALSLATGDMFVTTEGDWVTGG"
     gene            complement(2475..3191)
                     /locus_tag="VHD88_06985"
     CDS             complement(2475..3191)
                     /locus_tag="VHD88_06985"
                     /inference="COORDINATES: protein motif:HMM:NF024853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HVS21574.1"
                     /translation="MKRYLPIIIIVVVLAGAVGTFVMLSKKGSGNSDTNTAFVPTNQP
                     ALVANASPPPAQSSPESVPPTKPNVKVSSPVVLEEYGDYQCPPCGALHPDLKKIESEY
                     GNQVHFVFHYLPLTTIHKNAMTAARAAEAARLQNKFWEMHDRLYRNQKAWVDQEDPRP
                     TFVSYARELGLNADQFQQDMDSNRVEQAIVADIRRAMSLGINGTPTIVIDGQQLRADA
                     TNPVGIRRGINFTLERKPTS"
     gene            complement(3246..3464)
                     /locus_tag="VHD88_06990"
     CDS             complement(3246..3464)
                     /locus_tag="VHD88_06990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21575.1"
                     /translation="MSEESTDRPLVFSVVEDDGENVTIEISEEDYQRDLAAGIDEEDT
                     LKPGRYKMKRGGFLARHPEMKIKERKSA"
     gene            complement(3442..3723)
                     /locus_tag="VHD88_06995"
     CDS             complement(3442..3723)
                     /locus_tag="VHD88_06995"
                     /inference="COORDINATES: protein motif:HMM:NF016268.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HVS21576.1"
                     /translation="MRFEWDDEKAVANLEKHGVSFGEATEVFYDPNGLEDYYAGHSSE
                     DARFFIIGLSSRRLLYVVYAERAVDVVRIISARKANKAEREIYERRINR"
BASE COUNT          759 a         1135 c         1096 g          934 t
ORIGIN      
        1 tgtccgcccg taacccagtc gccttcagtt gtcacaaaca tgtcgccggt ggccagcgac
       61 aaagcagtag catcgtcaag tgtgtcaacg acgcacgcgt tcatccgttc cggcagcgtg
      121 cgctcgagca cttgcagcaa ctctggcggc gcgttcagga tgttgccgat gcgcggaccg
      181 tcgattccaa ccggaacgta ctgccgccgc gcagcggtgc tcgtcgcctc gccggcgaac
      241 gtgatcacat tcgtttcgtc actgccgccg tgaaagccgg taaccagaaa agtcgcgcgt
      301 ccggcctggt tgtctttcaa ccaagaggcc gcgcggatgg cgtcgtcagg cgtgggaacc
      361 agaatcgatt gcagagaaga tccgaacacg ccttcgactg cgcgttcgaa tcgctcgtca
      421 acttgcattg cgtcggcgag cgttccgatc agatgaaagt cctcgcgttc gttcgcggaa
      481 aacgcttctt gaacggcgag cgagtaatgc gcgcgtcgct ggtccaattc tttgaagctt
      541 tccagtcggt gcaaagcccg agaatgctcg tctcgaattc gcgtttgttc tgcatccgta
      601 tcggaaacac gctcatgccc ttcgacgacg gtcttgacgg cagcctcgcg ctcagaaacc
      661 atccgcgcca gcttctcgcg cgcagcgaga atttgctgat tcagcttcgt ggcttcagca
      721 cttcgctcgg cgtgtgcggc ggcggcgcgt tcactttcgc gagtcaaacc ctccgcttgc
      781 tgagtcagct tctcgagcgc gttttcgagt tgacgcgcga gttcgctcag cctttcagcc
      841 gccgcagtgt gagttagcaa ctcagcccgg ctgctttcaa tttcatcttc cgtcttcgca
      901 acctcggcga gcttgcgacc atgcgcttct tccgccaaat gcagcgcgcc ggtggtatgt
      961 tcgttctccg tattcaaacg gacatcgagt tggcgcaatc gttcaagctc agattcgatt
     1021 gtcaacagac gtgcgctgag ggcttcggct tctttttgaa tctcggcgcg tcgttttgtg
     1081 agcgcttcga tctgttcact ctgatagtcg cgctcgcgta tgcggcgatc gcgctgcagc
     1141 gcagcatcgg caacggctgc gcgcaccttt gatagttcgt cttcgagaga gcgcgcatcc
     1201 tgggttgccg cgcggctgct ttcttcacgt tcggccaatt ccgcggcgag gcgctgatca
     1261 tcctcggtcg cgctgtctaa ttccgcctgg gtttgttcca gcagcgcggc caggctgcgc
     1321 tcttcgccca cgtaaacgcg acgcagcaac tcgcgcaatt cttcgcgcag aatgcgatag
     1381 cggcgcgcct tcgcggcctg gcggcgcagg ctgttaacct ggcgctcgat ttccgaaatg
     1441 atgtccgaga gccggctgag atttgagcgc gccgattcca gtctcgcttc ggcggcgcgt
     1501 tgccgcacgc gaaactttgt gattcccgcc gcttcttcga tgagggtgcg acgatccatc
     1561 ggcttggcgg aaaggatttg gccgatgcgg ccctgctcga taatcgcgta gtgtccgcct
     1621 gacaatccgg tgccggaaaa aagatcctga atgtctcgca gtcggcaagg ccgatcgttc
     1681 agcaggtatt cgctctcgcc cgaacgataa agacggcgcg taaccgaaac ggcttcgccc
     1741 ggcgcaaact ccaacgcgag gttgcggcgg cgccaatgac gatgatgtgt tggcgttctt
     1801 gattgaggct gggctgctac gtcgttgggc gatgcgatcg cttcggactg atcagccgta
     1861 atggaaatcg cctctatcgg ttcctcagac agcgcggcag gctcgactga ctcactcgtc
     1921 ggagcgctcg cttcgactgg ttcgaaaacg gcgctgtgct cgtcgagctg ttccagcgtc
     1981 gaatcaatgt cttcgatgtc cggctcgcgc tcgacgtcct cgtcacgcac caggtgcaag
     2041 atgacttcgg acataccact cggcggccgg ttgcgcgagc cttgaaagat cacgtccttc
     2101 atctcagcgc cgcgcaagtg cttgacgcgc tgttcgccga gaacccaggc gatcgcgtcc
     2161 gcgacattgc tctttccgca accgttcggc ccgacaacag cggttatgcc ttcaccagtg
     2221 aagatgaggt cagtatggtc cgcgaaggac ttgaagcccg ttatttctaa gcgtcgaagc
     2281 ttgaacatgt gtccgtcgat ttgatgcagg gggtgacggg catcaaacga gaccttcggg
     2341 atggaaacta tagaggcacc ctgcccacat gtcaacaaga actttagctt aacaagttta
     2401 attgttagga attagcaggg ttaaagtcgc gaggggatcg ccggaacgag tcgggtgggt
     2461 gcgttagcga gaagctacga agtaggtttc cgttccagcg taaagtttat cccgcggcga
     2521 atgccgacag ggttcgtcgc atcagcccgc aattgttggc cgtcaatgac gatggttggt
     2581 gttccgttga tgcccaacga cattgctcgc cggatgtcgg cgacgatggc ttgctcaact
     2641 cggttgctgt ccatgtcttg ttgaaattga tccgcattca gacccaattc acgtgcgtaa
     2701 gaaacaaaag ttggacgcgg atcttcctga tcaacccagg ccttttgatt tcggtagagc
     2761 cggtcatgca tttcccagaa tttattttgc agacgagctg cttcagcggc gcgcgcggcc
     2821 gtcatcgcgt tcttgtggat cgtggtcaaa ggaagataat gaaagacaaa gtgtacttga
     2881 ttgccgtact cgctttcgat tttcttcaga tcgggatgca gcgcgccgca cggcgggcac
     2941 tgatagtcgc cgtactcttc gagcacgacc ggcgaactca ctttgacgtt cggcttcgta
     3001 ggcggaaccg actccggcga tgattgagcg ggaggaggtg aagcattagc caccagcgcc
     3061 ggttgatttg taggaacaaa ggctgtgttg gtgtcgctgt tgccgcttcc ttttttcgac
     3121 agcatgacga acgtcccgac ggccccggcg agcacgacga cgatgatgat gatgggcaga
     3181 tatcgtttca tggattcagg aatgagccac aactcgaacg tcactgttcc cggtgagagt
     3241 tcgactcacg cactctttct ttctttgatc ttcatttccg gatggcgggc aagaaagcct
     3301 ccacgcttca tcttatagcg gccaggtttc agcgtatctt cttcgtcgat cccggcagcc
     3361 agatcgcgtt ggtaatcttc ttctgaaatc tcgatagtca cattctcgcc gtcgtcttca
     3421 actacggaga agaccaaagg tctatcggtt gattcttcgc tcataaatct ccctctctgc
     3481 tttattggct ttgcgcgccg aaatgatccg cactacatca acagcgcgtt ctgcatagac
     3541 gacgtacagt aatcgccgac ttgacagtcc gatgataaag aaacgcgcgt cttcggatga
     3601 gtgtcctgca tagtaatctt cgagcccgtt cggatcataa aacacttccg tcgcctctcc
     3661 gaagctaacg ccatgcttct caagatttgc tacagccttt tcatcgtccc attcaaatct
     3721 cactcattgt aaccttttcg tcgccgcttt catcacgagt gcaccgcgac gcgtggcatc
     3781 tcgcgaccgt cgccgccttc agccggcgtc aaaacgcgga gtggttcggg ccattcgaca
     3841 gccggaatcg aattgggacc aaaacgtccg tcgcggccct tcgacttttc gcgcaaggct
     3901 tttagaactt tttcaggcgt gatc
//
LOCUS       DASZZE010000364         2340 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_10935, whole genome shotgun sequence.
ACCESSION   DASZZE010000364 DASZZE010000000
VERSION     DASZZE010000364.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2340)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2340)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2340
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10935"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..599)
                     /locus_tag="VHD88_07000"
     CDS             complement(<1..599)
                     /locus_tag="VHD88_07000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21577.1"
                     /translation="MKRFFAVSISLLALASLVVAQERRFTIDDLLKVRRVSDPQVSPK
                     GDWVAFTITDMDKAANKGTTQTYLAPLGAGEVRQLTNDEHSSASPRWSPDGEKLAFIS
                     ARDGEDQIWTIDVSNGVLKKITSLSTGAGDPVWSPDGKLLAFTSDVYPECLDDACNKR
                     RADEKAQSKVKAHVADRLLYRHWKYWLDGIRSHVFVVSSA"
     gene            978..1475
                     /locus_tag="VHD88_07005"
     CDS             978..1475
                     /locus_tag="VHD88_07005"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HVS21578.1"
                     /translation="MSDLDKSISLRPATTADEQFLREVYKSSRGDDLRELGWAEDRIG
                     EFLDMQHEAQQRFYESEYQRAVDQIILREGKPVGRLIVGRGDHEIRCIDIALLPTHRN
                     AGIGAFLIRQRQDEAKRANKPLRLQVIRFSRAVSLFERLGFVRTSETGTHFQMEWLPG
                     QRPDR"
     gene            1583..>2340
                     /locus_tag="VHD88_07010"
     CDS             1583..>2340
                     /locus_tag="VHD88_07010"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HVS21579.1"
                     /translation="MLRRITCAILKLSLRVYFRRIEVVGLDNVPRDTPVIFVLNHPNA
                     LVDPVFLLCLAPRRVSFVAKAPLFRMPIVGYFVRALDSLPAYRRQDEGQDVARNLETF
                     EAARRLLARGGTIGICPEGVSHDEPRLKPLKTGAARIALGAVSSGEAIDLQIVPVGLY
                     YTEKTTFRSSALLYFGEPLPVAPVVLEPNGTPPREAVRELSDKVEKALREVILHAEQE
                     EALSLIERAERIFSAEEVGEPDEEQRLTRSLELR"
BASE COUNT          504 a          659 c          679 g          498 t
ORIGIN      
        1 gcggacgaga cgacaaagac gtggctgcga attccgtcta gccaatattt ccagtggcga
       61 tacagcaaac gatccgcaac gtgcgccttc accttgcttt gtgctttctc atcggctcgg
      121 cgcttgttgc acgcgtcgtc caggcattcg ggataaacgt cagaggtgaa cgccagcaat
      181 ttgccgtcgg gcgaccagac gggatcaccc gcgccggtcg aaaggctggt aatcttcttc
      241 agcacgccgt tggaaacgtc gatcgtccaa atctgatctt cgccatcgcg tgccgagatg
      301 aacgcaagct tctcaccatc cggcgaccac cgcggcgacg cggacgaatg ctcgtcgttc
      361 gtcagttggc gcacctcgcc agcgccgagc ggcgccagat aagtctgcgt cgtgcctttg
      421 ttggcggctt tgtccatgtc agtgatcgtg aacgcaaccc aatcaccctt tggcgaaact
      481 tgcggatcgc tgacgcggcg aaccttcaga agatcatcga tggtaaatcg acgctcttgc
      541 gcgacgacga gcgacgcgag cgcaagcaaa ctgatcgaga cggcaaagaa gcgcttcata
      601 gttaacctct caggatttca gctaagttgt tcgggaaagc gcgcgtatta tgtcactttt
      661 gcattggaat ggcgactagt agattggcac actgcgttca taaaactgtc ctgaggcttc
      721 tcattcacac cctgcttcag ctgggtgatc agacacgaga ataggttagc caataaccgt
      781 tttaacggtt tccacgccgc ctacgaaacc gttaaaacgg ttggcaaggg taggctcttc
      841 gccgaacacc cagctaaagc agggtgtgaa tgagaggcac ggaaaagtta agcttcggcc
      901 tccctgcaat ttctccccgc ggcgagcctg cggttcctga tatccaaatc cgaacgggtt
      961 cgattagaat cacaatcgtg agcgatctgg ataagtcgat cagcctgcga ccggctacca
     1021 cagcagacga gcaattcctg cgcgaggttt acaagagcag ccgcggagat gatctgcgcg
     1081 aacttggatg ggcggaagat cgcatcggcg agtttctcga catgcagcat gaggcgcagc
     1141 agcgttttta cgaaagcgaa taccagcgag ccgtcgatca aataattctg cgagaaggaa
     1201 aacctgtagg tcgcttgatt gtggggcggg gcgaccacga gattcgctgc atcgatattg
     1261 cgttgcttcc cacgcatcgc aacgcgggca tcggcgcgtt tctgattcgc caacgccaag
     1321 acgaagcgaa acgcgcgaac aagccgctgc gcttgcaagt catcagattc agccgcgcag
     1381 tcagtttgtt tgagcgtctg ggattcgtgc gcaccagcga gacgggaacg cattttcaga
     1441 tggagtggtt gccggggcag agacccgacc gttagggagg gtgcagcacg gtcccgatga
     1501 gtgaaccact gacgatcggg ctactgcact tctagcagag agtttactac ccgctcgcta
     1561 ccgcgagcgg ttctgtaccg agatgctcag gagaatcact tgcgcaattc tcaaactttc
     1621 gctgcgcgtt tattttcgcc gcattgaagt ggtcggcctc gacaatgttc ctcgcgacac
     1681 cccggtaatc tttgttctca atcacccaaa tgcgctggtc gatccggtgt tcctgctatg
     1741 cctcgcgccg cgccgtgttt cgttcgtcgc gaaagcgccg ctgtttcgca tgccgatcgt
     1801 gggttacttc gtgcgcgcgc tcgattcact gccggcctat cgccgccagg acgagggcca
     1861 ggatgtcgcg cgcaatctcg aaacgttcga ggcggcgcgc cggctgttgg cgcgcggcgg
     1921 cacgatcgga atttgcccgg aaggcgtgtc gcatgacgag ccgcgcttga aacctttgaa
     1981 gaccggcgcg gcgcgcatcg cgctgggcgc agtatcgtcc ggcgaagcga tcgatttgca
     2041 gatcgttccc gtcggacttt actacactga gaagacgacg tttcgcagtt cggcgctgct
     2101 gtatttcggc gaacctctgc cggttgcgcc ggttgtgctc gagcccaacg gcactccgcc
     2161 acgcgaagcg gtgcgcgaac tttcagacaa ggtcgagaaa gccttgcgcg aagtgattct
     2221 ccacgctgaa caggaagaag ctttatcgtt gatcgagaga gccgagcgaa ttttctctgc
     2281 cgaagaagtc ggcgagcctg atgaagaaca acgattaacg cggtcccttg aattgcgtca
//
LOCUS       DASZZE010000365         3857 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_194235, whole genome shotgun sequence.
ACCESSION   DASZZE010000365 DASZZE010000000
VERSION     DASZZE010000365.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3857)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3857)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3857
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_194235"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..370)
                     /locus_tag="VHD88_07015"
     CDS             complement(<1..370)
                     /locus_tag="VHD88_07015"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter transmembrane domain-containing
                     protein"
                     /protein_id="HVS21580.1"
                     /translation="MSTAVKQFHEEEAIGKTYDWQVARRLLRYLKPYLRLLIPALILT
                     LLLNPLGILQPQFTKYAIDWYILPRKTDGIAFFALLYVAVQLAKFAFSYFQVVLLNTV
                     GQYAMFDLRREIYNKLQHQEV"
     gene            complement(415..2157)
                     /locus_tag="VHD88_07020"
     CDS             complement(415..2157)
                     /locus_tag="VHD88_07020"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HVS21581.1"
                     /translation="MNDLRKLARYFRPYKLSLIIGVACIVASVVFNVTVPLIVGSAID
                     ANWSQVDKVKLTIAAMKVLGASMASGVFLFLQRRILIGMSRHIEYDLRNDFYAHLVDQ
                     PLAFFQEHRTGDLMARATNDLAAVRQLAGPLIMYSLQTVFAVVIILPIMFVLNWKLTL
                     LLFVTMPLVSLTVKIFGQQVHVRFEKIQDFFAQITARAQENFTGVRVVRAYAQENAEI
                     EAFNRLNWEYAQRNLSLVRIDAIMRPLMAFLIGLGFVLIVWAGVPLAARGAITVGKFT
                     EFNMYLFRLIWPLIAIGYVVNLYQRGTASWKRMQAITTIKPAIADAPNVKERPPIVGR
                     IEFRDLTFRYHPTSEPVLNEIELTIEAGQTVAFVGRTGSGKSTIANLIPRILEAPPES
                     VFVDGVAVQDYPLAQLRAAIGYVPQETFLFSNTLAKNIAFGIENGDRAKIERAAEIAG
                     LGDDLRDFPDGFETLVGERGITLSGGQKQRTAIARAVVREPKILILDDALSSVDTYTE
                     EKILAQLRGVMRERTSIIVSHRVSTVRDADVICVLDEGRIIERGTHNELLALGGEYAD
                     LHERQLLEEELAAT"
     gene            complement(2410..>3857)
                     /locus_tag="VHD88_07025"
     CDS             complement(2410..>3857)
                     /locus_tag="VHD88_07025"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0052621 - diguanylate cyclase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sensor domain-containing diguanylate cyclase"
                     /protein_id="HVS21582.1"
                     /translation="RRTFFFVRQADAINEFVSGAGRNEALSSVILQLAESNHVNEHFV
                     IIADARFSALLATVRGRTKDGSGGDEVVWTFEPDIVYSALEYLMARVSAEHPYQSAAF
                     GSAVRTSMPKATSLQLTLSVTTKLAHLLQEQASREIAVNRIATAIRESLELGVILQKT
                     VDEVGSALNVACCALRVEGQTAEQALSYSFFAKESAIEAKQREFFMDELNVHNACLAK
                     HPEPFTRDGCDESGSSDDRLPLAVVPLIFHERYMGALQVIAGDPARTWQENELLLLRT
                     VADQVAVAVNHADLFAQIQQQALTDALTGCYNRRSFEMQLDKDLQMARRLHKPLSLVM
                     LDLDRLKQLNDSSGHDAGDAALRRLAECFREELRLVDSAARLGGDEFVLILPQAYSEG
                     AMIVAERLRARIQQIEFPGFGNLSASFGIATFPSHASARADLIAAADAALYSAKRAGR
                     NRVCVFEAADSKPELIASSIDSRPETVDQTM"
BASE COUNT          879 a         1077 c         1074 g          827 t
ORIGIN      
        1 cgacttcctg atgctgcagc ttgttgtata tctcgcgccg caaatcaaac atcgcatact
       61 ggccgacggt gtttaggagt acgacctgaa aatacgaaaa ggcgaatttg gccaactgca
      121 cggcgacgta gagcagagca aagaaggcga tgccgtcggt cttgcgcggc aggatgtacc
      181 aatcgattgc gtactttgtg aattgtggtt gcagaatgcc cagcggattc aacaacagcg
      241 tcagaatcaa cgccggaatc agcagtcgca gatacggttt cagatagcgc agcaagcggc
      301 gcgcaacctg ccagtcgtac gttttgccga tggcctcttc ttcgtgaaat tgtttgactg
      361 cggtggacat ttctcgaatc tggaatctga aatctggaat ctgaaatcta caaattaagt
      421 tgctgccagc tcctcctcca gcaactgtcg ctcgtgaaga tcggcgtact cgccgcccag
      481 cgcgagcagt tcattgtgcg tgcctcgttc gataattcgg ccttcgtcga gcacgcagat
      541 tacgtctgcg tcgcgcacgg ttgagacgcg atgcgagaca atgatgctcg tacgctcgcg
      601 catgacgccg cgaagctgcg ccaggatttt ttcttcagtg taagtgtcca cggacgaaag
      661 cgcgtcgtcg agaatcagta tctttggttc gcgcacaact gcgcgcgcga ttgcggtgcg
      721 ctgcttttgc ccgccagaga gggtgatgcc gcgctcgccc acgagcgttt cgaatccgtc
      781 agggaaatcg cgcagatcat cgccgaggcc ggcgatctca gcagcccgct cgatcttggc
      841 acgatcgccg ttttcaattc cgaaggcgat gttcttcgcc aaagtattgc tgaacagaaa
      901 agtttcctgc ggtacatagc cgatcgccgc gcgcaattgc gccagtggat agtcttgaac
      961 tgcaacgcca tcgacaaaca cgctttccgg cggcgcctcg aggatgcgcg gaatcaagtt
     1021 cgcgattgtg gatttgccgc tgcccgtgcg gcccacgaag gcgacggtct ggccggcttc
     1081 aatggtcagc tctatctcgt tcaagactgg ctcactggtt ggatggtaac ggaaagtcag
     1141 atcgcgaaac tctatgcgac caacgatcgg cggtcgttct ttgacgttcg gcgcatcagc
     1201 gatcgcaggt ttgatggtcg tgatcgcctg catacgcttc cagcttgccg tgccgcgctg
     1261 ataaagattg acgacgtagc cgatcgcaat cagcggccag attaaccgga acaggtacat
     1321 attgaattcg gtaaacttgc ccaccgtaat ggcgccgcgc gcggccagcg gcacgccggc
     1381 ccacacgatc aacacgaagc cgaggccgat cagaaacgcc atcagcggtc gcatgatcgc
     1441 gtcgatgcgc acgaggctga ggttcctttg cgcgtattcc cagttgagcc ggttgaacgc
     1501 ctcgatttca gcgttctctt gtgcgtaggc gcgcaccacg cgaacacctg tgaagttctc
     1561 ctgtgcgcgc gcggtaattt gcgcgaaaaa gtcctggatt ttctcaaatc gcacgtgaac
     1621 ctgctggcca aaaattttta ccgtcagcga aaccagcggc atcgttacaa acaggagcag
     1681 cgtcagtttc caattgagga caaacattat cggcagaatg atgacgacgg cgaacactgt
     1741 ttgcagactg tacatgatta acggaccggc aagttggcgc accgcggcga gatcattcgt
     1801 cgcgcgcgcc atcagatcgc ccgtgcggtg ctcctggaaa aacgccagcg gctgatcgac
     1861 cagatgagca tagaagtcat ttctcagatc gtattcgatg tggcgagaca tgccgatgag
     1921 gatgcgtcgt tgcaaaaaca ggaagacgcc gctggccata ctggcgccga ggactttcat
     1981 cgcggcgata gtcagcttga ccttgtcaac ctggctccag ttggcgtcga tcgcacttcc
     2041 aacaatcaga ggtacagtga cattgaaaac gacactggcc acaatgcagg caacgccgat
     2101 gatcaacgac agcttgtagg gtcgaaaata gcgcgcgagt tttcgcagat cgttcatgaa
     2161 tcagacacag aagctactat taccttcaaa cgcccggcct acgattcggg atcgcgcgat
     2221 cgggaattcg caatgaaagc ttcggaatct gaaattctaa gtgagattga tctggctggc
     2281 aaagcgtcgt ggcttctggc gcgcagttca gagttcacta ttcagcttgt aaagtgtcga
     2341 gactggtagt ctaggtgttg aactctaaac tgaaactggt gatctgctgc ggcgcttcct
     2401 cgccctgctt cacatggtct gatcaactgt ttcgggccgc gagtcgatgg aagaagcaat
     2461 caattcgggc ttgctgtctg cggcctcaaa aacgcacacg cgatttcgac cagctcgctt
     2521 cgcgctataa agagcagcgt cagcggcagc tatcaaatcc gcacgggcag aggcgtgcga
     2581 tggaaatgtg gcaattccaa acgacgcgct taggtttcca aatccaggaa actcgatttg
     2641 ctggatgcgc gcgcgcagac gttcggcgac gatcatggcg ccctcggaat acgcttgagg
     2701 caggatcaag acaaactcat caccgccaag gcgcgcggct gaatctacaa ggcgcaattc
     2761 ttccctgaaa cattccgcca atctgcgcag ggctgcgtcg cccgcgtcgt gaccggacga
     2821 gtcgttcaat tgcttcaagc gatcaagatc gagcatcaca agcgacaaag gcttatgcag
     2881 gcgcctggcc atttgcagat ccttatcgag ttgcatctcg aacgagcgcc ggttgtagca
     2941 acccgtgagc gcgtcagtca aagcctgctg ctgaatctgc gcgaacaggt cggcatgatt
     3001 gaccgcgacg gcaacctgat cggcaaccgt gcgcagcagc aagagttcgt tctcttgcca
     3061 ggtgcgcgcc ggatcgcctg cgatcacctg caaggcgccc atgtagcgtt cgtggaaaat
     3121 caacggcacg accgcgaggg gaagtctgtc gtcgctcgat ccggattcgt cacaaccatc
     3181 tcgcgtgaaa ggctccggat gttttgccag acacgcgtta tggacattaa gttcgtccat
     3241 gaagaactca cgttgcttgg cttctattgc cgactctttc gcgaaaaagg aatagctcag
     3301 tgcttgctcc gcggtttgtc cctcaacgcg caaggcgcaa catgcgacgt tgagcgcgct
     3361 gccgacttca tctaccgtct tttgcaggat aactcccaac tccagcgatt cgcgaattgc
     3421 cgtcgcgatg cgattgaccg cgatctcgcg gctggcttgc tcctgaagca gatgcgcgag
     3481 tttcgtggtg acgctcagcg tgagttgcaa cgacgtcgct ttgggcatcg aagtgcgcac
     3541 cgccgatcca aacgccgccg actgataagg atgctcagca ctcacgcgag ccatcaagta
     3601 ttcgagcgcc gaataaacaa tgtccggctc gaaggtccag acgacttcgt ctccaccgct
     3661 cccgtctttg gttcgtccgc gtaccgtggc gagcaaagct gaaaagcgcg catcggcgat
     3721 gatgacgaaa tgctcgttga cgtgattgct ttccgcaagc tgaagaatta ccgaactcag
     3781 agcctcgttg cgtccagcgc cgctgacaaa ctcgttaatc gcatccgcct ggcgaacaaa
     3841 aaagaaagtg cggcgac
//
LOCUS       DASZZE010000366         6642 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_127584, whole genome shotgun sequence.
ACCESSION   DASZZE010000366 DASZZE010000000
VERSION     DASZZE010000366.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6642)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6642)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6642
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127584"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(169..846)
                     /locus_tag="VHD88_07030"
     CDS             complement(169..846)
                     /locus_tag="VHD88_07030"
                     /inference="COORDINATES: protein motif:HMM:NF015734.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PASTA domain-containing protein"
                     /protein_id="HVS21583.1"
                     /translation="MLDFALDLRPNRIERPRKEIEYIVPFINRALTALKRIFIVIGIA
                     VAFTLGLLGAIYLSLRSSETKVPDIVGKDRVAAENTISSAGLNFRVRATRPTSEAKPD
                     TVLIQLPHAGEVVKVGQTVAVDISRPTKEGESSTPTSSNANTAGEKMPENTNAANSAT
                     NTNDNKPKRKPANKNDNDNRTTAGNANVNPTETPVHNLNSNNPDRSNANRGASNVNRR
                     PVPAPTP"
     gene            complement(888..2327)
                     /gene="rsmB"
                     /locus_tag="VHD88_07035"
     CDS             complement(888..2327)
                     /gene="rsmB"
                     /locus_tag="VHD88_07035"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: protein motif:HMM:TIGR00563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016434 - rRNA (cytosine)
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HVS21584.1"
                     /translation="MTTSLARRAAFEILRRVELEGAYASVLLASLDRGMREDDRALCH
                     ELVLGVLRRQLWLDQLLKHLANRSLAGVDLPVKLALRLGLYQLRFLSRIPPSAAVDES
                     VKLVRAAGLRSAASFANAVLRRATREPNYDPTARVGDPLERLAIETSHPKWLIRRWAN
                     AFGFEEAAALAHADNQPAPVAFRVTAKALKSKDASQIISELETKDARVSPSKIAPEAW
                     RVVGYRTAGGSERVTAGKHGTPAGLPRWGPRDAAGGPQARIPALLRKLSRDGLIYLQD
                     EASQLVAHLLDAQSGDRVLDVCAAPGSKTTHIDALAPQALIVAGDLYEHRLRTLKELA
                     KQQGADGIQIVAYDATRPLPFAESLFDRVLVDAPCSGTGTLRRNPEIRWRIKPADIDE
                     LSQKQTQILANASAVVRAGGHLVYSTCSVEPEENEHVVENFLKEHENFRRANLDAPAD
                     LRTESGAVRTWPHRQETDGFFVAAFEREG"
     gene            complement(2334..2762)
                     /locus_tag="VHD88_07040"
     CDS             complement(2334..2762)
                     /locus_tag="VHD88_07040"
                     /inference="COORDINATES: protein motif:HMM:NF024865.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HVS21585.1"
                     /translation="MDNSIQPPHAATIEVEQHLRQLNDEWVKALVRGDGETLERIMAD
                     DFLFTYPLEGDDKAQFIADVTAGDLKIEHISREQVSVRVFGSTAVLTARDSATWLYHG
                     RELSGQYKIIQVYSERNGQWQLCAVQACPMAQPDAHAPGS"
     gene            3024..3488
                     /locus_tag="VHD88_07045"
     CDS             3024..3488
                     /locus_tag="VHD88_07045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21586.1"
                     /translation="MKSNYFKNTIGGAILGISLLVGIVMASTTAQAQYPYPNQDQNRR
                     DRDYDRAQRDQDRNDRLNNRAGRRGRNGDGYANYGGSFELRQTALNAGYNEGAKAGRD
                     DRRHNRRYDSQRNSAFQRANKDYNSRLGDRWIYQRYFRDAFENGYSDGFNGY"
     gene            3664..4050
                     /locus_tag="VHD88_07050"
     CDS             3664..4050
                     /locus_tag="VHD88_07050"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HVS21587.1"
                     /translation="MSKKILVIEDDDVARGLMRMALEKRGYKVTVAENGVRGYDTAVF
                     LRPDLIVTDILMPAADGIHVVRRVRDTPSLEATPILVTTAFGDGNATFALQQGANAYE
                     PKPIDPQSFLSTVKRLLAERDSLKAA"
     gene            4334..>6642
                     /locus_tag="VHD88_07055"
     CDS             4334..>6642
                     /locus_tag="VHD88_07055"
                     /inference="COORDINATES: protein motif:HMM:NF018190.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5916 domain-containing protein"
                     /protein_id="HVS21588.1"
                     /translation="MKKVPLLLAIVAVRAIVSFGQSAPATITPASSSSKSNGAPAKSG
                     IVLPPEKAQPVRMPRFDKPPVIDGKLDDEVWKHAVVLKDFYQVQPGDNIAPSKPTEVM
                     LGYDSKFLYIAFHCYDEPDKVRATIPKRDHIFNDDYVGILFDTFNDSRKAYEFDFNPL
                     GVQADGIWTDGQGEDFNPDVVMESKGILTEDGWTVEVAIPFKSLRYVAGKDKLWGAHF
                     WRRIKRFNNELDSWMPLDRDKSSTLAQEGHLAGLEGISTERTLELIPSLTLSETGKRK
                     ASLTPAQLSAGQLDPGRFVNEPIKFDPGLTGKFTITPNVTLDFAVNPDFAQVESDQLV
                     VTANQRFPIFFAEKRPFFLEGVDIFNTQIAAVHTRAIIDPDYAVKLTGKVNRNTFGLL
                     LASDNGPGNFSPEERLTANPRLIDKNASIGILRLKRDIGKDSFIGFLATYRRFVDQYN
                     ELGGFDSRLRINKQTTFSAQALFTHSRRNFFYPDLGQTLDRAENAFIYATDYNMNGRH
                     FGYEYSTVGRTRYYRADVGFNRRTNTNNHNLFVRYNSEPHSKARLISWRVYNAFGTNF
                     DWQGRSQIFNNESQIQFSFRRQTYLGIGLDKGYERVFEEEFGMKRPAGSSCAITNTCT
                     FWGNDNERSASNGGLYVFAGSTVNKKINFNVFANQSYGNLDFDFGAGPRYPRVSIPAV
                     TARKAQADGLCGGSSPPAICKAPRDPGPGKFFNMNASVTYQPSTPLNLTLSFTKQRLR
                     RNDTHLLAFDENIVSMRGTYQFTRFIFARG"
BASE COUNT         1452 a         1840 c         1851 g         1499 t
ORIGIN      
        1 gggacgaacc gaccgtccat tacatcgacg tgaagcagag acgcgccggc gcgctcgacc
       61 gtcgcgattt gttcgccgag ccgcgtgaaa tcggcggaaa gaattgatgg ggcaaattcg
      121 atcattgaaa tcagtcgcgc tccggcggcg ttagcaatcc aatcaaagct agggcgtcgg
      181 cgctgggaca gggcgtcgat ttacgttgct ggcgccgcga ttcgcgttgc tccggtcggg
      241 attattcgaa ttcaggttgt gcacgggagt ttcagtcggg ttcacatttg cattgcctgc
      301 cgtcgtgcga ttgtcattgt cgtttttgtt agcgggcttg cgctttggct tgttgtcgtt
      361 tgtgttcgtc gcagaattcg cggcgttagt gttctcgggc atcttctcgc ctgcggtgtt
      421 cgcattcgat gaagttggcg tcgaactctc tccttccttc gtaggacggc tgatgtccac
      481 ggcgacggtt tgtccgactt tgacgacctc gccggcgtgc ggcagttgaa tcagcaccgt
      541 atcaggtttt gcctcgctgg tcggtcgcgt ggcgcgcacg cgaaaattca ggcccgccga
      601 actaattgtg ttctccgccg ccacgcgatc tttgcctacg atgtcaggga ctttcgtttc
      661 ggaactgcgc agcgagagat aaatcgcgcc caacagcccg agcgtaaacg cgacggcgat
      721 tccaattacg atgaagattc tttttagcgc cgtcagcgct cgattaatga aaggcacgat
      781 gtattcaatc tcttttcggg ggcgctcgat gcgattgggg cgcaaatcaa gcgcgaagtc
      841 tagcatggac agaaccgaga gcggtagcga gcggataatg tttcggttca gccttcgcgc
      901 tcgaacgcag cgacaaaaaa cccatccgtc tcctggcggt gcggccaggt gcggaccgct
      961 ccgctctcgg ttcgcaaatc ggccggcgca tcaagattgg cgcgccgaaa gttctcatgc
     1021 tctttcagaa aattctcgac gacgtgctcg ttttcttcgg gctcgactga gcacgttgaa
     1081 taaaccaagt gcccgcccgc gcgcacgact gctgaagcgt ttgccagaat ttgtgtttgc
     1141 ttttgggaaa gctcatcaat gtccgcaggc ttgatgcgcc aacgaatttc cggattgcga
     1201 cgcagcgtgc cggtgcctga gcacggcgcg tcaaccaaca cgcgatcaaa tagtgattca
     1261 gcgaagggca aagggcgggt ggcgtcgtaa gcgacgattt gaatgccatc agcgccctgc
     1321 tgttttgcta gttctttgag cgtgcgcaaa cgatgttcgt acaagtcgcc agcgacaatc
     1381 agcgcttgcg gcgcgagcgc gtcgatgtgt gtggtcttgc ttcccggcgc cgcgcaaaca
     1441 tccagcacgc gatcgcctga ttgagcgtcg agcagatgag caaccaactg cgaggcttcg
     1501 tcttgtagat aaatcaggcc atcgcgcgat agtttgcgca ggagcgcggg gatccttgcc
     1561 tgcggtccgc cggcagcatc gcggggtccc cagcggggca gccccgctgg ggtgccatgt
     1621 ttgccggcgg ttacccgctc gctaccgccc gcggttctgt atccgacgac gcgccacgct
     1681 tcgggcgcga tcttcgatgg cgaaacgcgc gcgtctttgg tttccagttc gctgataatt
     1741 tgcgaggcgt ctttactttt gagagccttc gccgtgacac gaaaagcaac gggcgcgggt
     1801 tggttgtcgg cgtgcgccaa cgccgcggcc tcttcaaatc caaacgcgtt ggcccaacgt
     1861 cttatcaacc acttcggatg cgaagtttca atcgcaagtc tctcaagtgg gtcgccaacg
     1921 cgtgcggtag gatcgtaatt cggctcgcgg gtcgcgcggc gcagaacagc gttcgcaaag
     1981 ctcgccgcgg atcgcaaacc ggcagcgcgc acgagtttga cggattcatc cactgctgcc
     2041 gatggcggaa tgcgcgaaag gaagcgaagc tgatagaggc caagccgcaa agcgagcttg
     2101 accggcagat cgacgccggc aaggctgcga ttagccaagt gcttgagcaa ttgatcgagc
     2161 cacaactgtc gccgcagcac gccgagcacg agttcatgac agagcgcgcg atcatcctcg
     2221 cgcattccac gatcgagact tgccaggagc accgaagcat acgcgccttc cagttccact
     2281 cgccggagta tttcaaacgc ggcgcgacgt gcaagcgaag ttgtcatgcg ggatcagctt
     2341 ccaggcgcgt gagcgtcggg ttgcgccatc gggcaggcct ggacggcgca caattgccat
     2401 tggccgttgc gctcggaata gacttgaatg attttgtact ggccggaaag ttcgcgaccg
     2461 tgatagagcc aggtggctga gtcgcgcgca gtcaacaccg cagtgctccc gaacacgcgg
     2521 acgctgacct gttcacggct gatatgctcg atcttgagat cgcccgcggt cacatcggca
     2581 atgaattgtg ctttgtcatc gccttccagc ggataggtaa acaagaaatc atcagccatg
     2641 atgcgttcga gtgtctcgcc gtcgccgcgc accaaagctt tgacccactc atcattcagt
     2701 tggcgcaagt gttgctccac ttcaatcgtg gccgcatgtg ggggttgtat tgaattgtcc
     2761 atgagactcg cttcgacggt tgcttgaata cgacgcttct acgccagatc gaaggcgaga
     2821 gtcaaccgat ccaagtctaa gcgataccgt ctcgttgtcg tgccaaccgc accgagactg
     2881 cattcgatca actcaatttc cgcggcccat gtcgtttaag ccgacacgat atgggatggg
     2941 cagtcactac tctggcgatt tttcatcata ggaatttgga gtggcatgtt cattgccaac
     3001 gacttcgccg gaggtggtta gaaatgaaat caaattactt taagaacacg atcgggggcg
     3061 ccatcctggg aatctcgttg ttggttggca tcgtaatggc gagcactacg gcccaggcgc
     3121 agtatccgta tccgaatcag gatcagaatc gccgagaccg cgattacgat cgcgctcagc
     3181 gagatcagga tcgcaacgat cgcttgaaca atcgcgccgg acgccgcggg cgcaacgggg
     3241 atggttatgc gaactacggt ggttcgtttg aactgcgaca gacagcgctt aacgccggtt
     3301 acaatgaagg cgccaaggca ggccgcgatg atcgccggca caaccgccgc tatgactctc
     3361 agcgcaacag cgcgtttcag agagccaaca aggattacaa ctcgcggctg ggagatcgat
     3421 ggatttacca gcgctacttc cgtgacgcgt ttgagaacgg ctactcggac ggcttcaacg
     3481 gttactaagt ctcagaccag atcgtagcct aacttaaagc gggagggaaa ccgatggttt
     3541 cgctcccgct ttttttccgt tggtcacact ttttggggtt ccgaatcgcg gaatgcctat
     3601 gccaatcgca gtttattacc agtacaaagc aatccgatgt gattcacttc gctggctatg
     3661 actatgtcca agaaaattct ggttattgaa gatgacgacg tggcgcgcgg actgatgcgc
     3721 atggcgctag agaagcgggg atacaaagtc accgtcgcag agaacggcgt gcgcggttac
     3781 gacactgccg ttttcttaag gcccgacttg atcgttacag acattctgat gccggcggct
     3841 gacggcattc acgtagtgcg gcgcgtgcgc gacacgcctt cgttggaagc gacaccgatt
     3901 ctggtgacga ctgcatttgg cgacggcaac gcgacattcg cgctgcaaca aggcgctaac
     3961 gcctacgagc cgaagccaat cgatccgcaa agctttcttt ccacagtgaa gcgtttgctt
     4021 gccgagcgcg acagtctgaa ggcggcatag gagaaaatcc agccgctcat cacatcgtcc
     4081 ctacatcacg ttcacttttc cgattctcgg gctcgttcat cactctccaa agtttgactc
     4141 atcgttaaca ctgcggaccg cagaatcgtc tttgcagatc gccgcctccg cggtgaaaca
     4201 attctgttac gaagcgcgtt ttattgcgga acaatttgcg ctttgcgccg ttaatttaac
     4261 gaacgactaa ctcggagaga gcttttcgat ccaaacaggc cttacgattc gacgacttcg
     4321 acgacgattt ctaatgaaga aagtgcctct tcttctggcg attgttgctg tgcgcgcaat
     4381 tgtctccttc gggcaatccg caccggccac gattactcct gcctcgagtt cgtcaaagag
     4441 caacggcgcg ccggcgaagt caggaattgt tctgcctcct gaaaaggcac aaccagtgcg
     4501 catgccgcgc tttgataaac ctccggtgat tgacggaaag cttgacgatg aagtctggaa
     4561 gcacgccgtc gtgctgaaag acttttatca agtccagccc ggcgataaca tcgctccgtc
     4621 gaagccgacc gaggtaatgc tcggctatga ttcgaagttt ctgtacatcg cgtttcattg
     4681 ttatgacgag ccggacaaag tacgcgccac gattccgaag cgcgatcaca tcttcaacga
     4741 cgactatgta ggcattctct tcgacacgtt caatgatagc cgcaaagcgt acgaattcga
     4801 tttcaaccca ctcggtgtcc aggctgacgg catttggact gacggtcagg gagaagactt
     4861 caatcccgac gtagtaatgg aatcgaaagg gatcctgact gaagacggtt ggacggtcga
     4921 agtcgcgatc cctttcaagt cgctgcgtta cgttgccggc aaagacaaac tttggggcgc
     4981 gcatttctgg cggcgcatca agcgcttcaa caacgagctg gatagttgga tgccactcga
     5041 ccgcgataag tcgagcacgc ttgcacagga gggccatctc gcgggcctcg aaggaatctc
     5101 aaccgagcgc accctggaac taattcccag tttgactctg tctgagacgg gaaagcgaaa
     5161 agcatcgttg accccagcgc agctcagcgc gggacaattg gatccgggaa gattcgtcaa
     5221 cgagccgatc aagttcgacc ctggcctaac cggaaaattt accattacgc cgaacgtgac
     5281 gctcgacttt gctgttaatc ccgactttgc ccaggtggaa tcggaccagt tggtggtcac
     5341 ggctaaccag cgcttcccaa tcttctttgc cgagaaacgt ccattctttc ttgagggcgt
     5401 cgatatcttt aatactcaga tcgcggcggt gcacacgcgc gccattatcg atcccgatta
     5461 cgccgtcaag ctcacgggca aagtcaaccg caacaccttc ggtctgctgt tggcgtcaga
     5521 caatggtccg ggaaacttca gtcccgaaga acggctgact gcgaatccga ggttgattga
     5581 caagaatgct tcgatcggaa tccttcgatt gaagcgcgac atcggcaagg actctttcat
     5641 cggatttctc gccacctatc gccgatttgt ggatcagtac aacgaactgg gaggattcga
     5701 ttcgcgtctg cgcattaaca agcagacgac ctttagcgct caggcgttgt ttactcactc
     5761 tcgacgcaat ttcttttatc ccgacctcgg ccaaacgctg gatcgagcag agaatgcctt
     5821 catctacgcc acggactaca acatgaacgg tcgtcatttc ggttacgaat actcgaccgt
     5881 tggacgtact cgctactatc gcgccgacgt cggcttcaac cggcggacca acaccaacaa
     5941 tcacaatttg ttcgttcgct ataactcgga acctcattct aaggcgcgct tgatttcgtg
     6001 gcgcgtctat aatgcttttg gaactaattt cgactggcag gggcgctcgc aaatcttcaa
     6061 caacgaatcg caaattcaat tcagttttcg gcgtcaaact tatctgggaa tcggcctgga
     6121 taaaggctac gagcgcgttt ttgaagagga gtttggaatg aagcgcccgg caggatcgag
     6181 ctgcgcgatt acgaacacct gcacgttctg gggaaacgat aacgagcgct cggcctcgaa
     6241 tggcgggctg tatgttttcg ccggctcaac tgtaaacaag aagatcaatt ttaatgtctt
     6301 tgccaatcag tcgtatggaa atctcgattt cgatttcggc gccggaccgc gttatccgcg
     6361 agtgagcatt cccgccgtga ctgcgcgcaa ggcccaggcc gatgggctgt gcggcgggtc
     6421 gagtccgccc gctatctgca aagcgccacg ggatcccggc cctggcaaat tcttcaacat
     6481 gaatgcgagc gtaacctatc aaccatcgac gcctttgaat ctcaccctga gtttcaccaa
     6541 gcagcgtttg cgcaggaacg acactcacct gttggccttt gacgagaaca tcgtttcgat
     6601 gcgtggaact tatcaattca cgcgattcat ttttgcgcgc gg
//
LOCUS       DASZZE010000367         5273 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_237657, whole genome shotgun sequence.
ACCESSION   DASZZE010000367 DASZZE010000000
VERSION     DASZZE010000367.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5273)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5273)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5273
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_237657"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(99..713)
                     /gene="recR"
                     /locus_tag="VHD88_07060"
     CDS             complement(99..713)
                     /gene="recR"
                     /locus_tag="VHD88_07060"
                     /inference="COORDINATES: protein motif:HMM:TIGR00615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination mediator RecR"
                     /protein_id="HVS21589.1"
                     /translation="MLDYAEPVTKLIDEFKRLPSIGQKSAQRLAFHILRTPEADVERL
                     IAALHEVKERITECSVCNNLTDVNPCRFCSLPSRDRSMLCIVEQPYDLVAVEKTRSYK
                     GLYHVLHGSLSPIRGIRPSDLRLDNLLPRLKPENNDGVEVHEVILATNPNTEGEATAN
                     YISRLLKPLGLLVTRLAMGMPVGSDLEYVDEVTMDKALANRHEM"
     gene            complement(808..1122)
                     /locus_tag="VHD88_07065"
     CDS             complement(808..1122)
                     /locus_tag="VHD88_07065"
                     /inference="COORDINATES: protein motif:HMM:TIGR00103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HVS21590.1"
                     /translation="MKFPGGLNIQGMMKQAQQMQEKMAREMDELRVDASAGGGVVTVE
                     MKGDHEIISLRVDPEIVKDNDIEMLQDMIVAAINEANRKVNEAMKSKLGSMLPPGLGN
                     LF"
     gene            1146..1970
                     /locus_tag="VHD88_07070"
     CDS             1146..1970
                     /locus_tag="VHD88_07070"
                     /inference="COORDINATES: protein motif:HMM:NF014305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21591.1"
                     /translation="MKISESRDASILTANRDECKVGHGVTLRFCSPACYKPALTMNEL
                     TTRDTSSAFERTLTAEIQLYYDMVAPESRPAPLLIALHGYGASKWHAMREAQAIAPEG
                     FAIASLQGPHQHLREPKAPGGPLRFGFGWLTNFRPEESVAMHHRALLEMIDTLNREGV
                     ANPKQVFLLGFSQSCALNYRFAFTHPDVMRGVIGICGGLPGDWETNEHYKPTDAAVFH
                     LAGERDEYYPPARVNDYAAQLRNRARDVEFKSYDADHEIVQSMRDDIREWLQQKSA"
     gene            1972..2631
                     /locus_tag="VHD88_07075"
     CDS             1972..2631
                     /locus_tag="VHD88_07075"
                     /inference="COORDINATES: protein motif:HMM:NF018626.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1287 domain-containing protein"
                     /protein_id="HVS21592.1"
                     /translation="MKSTSIQPSLVLACALLLTAACQKQHAAKPLKPPEQQTETRALP
                     AKSSPQLNLVIDNAIDQVGKTTGYDASYQKLEYPNGDVPIETGVCSDVVVRAFRKGGI
                     DLQKEVHEDMKGNFSAYPTRWGLSGPDANIDHRRVPNLQTYFTRKAKSLATTGSSETF
                     LPGDIVTWDLGNNTDHVGMVVNVWYKPSQRYLIIHNIDAGTRMEDVLFAWKMTGHYRY
                     F"
     gene            3052..3453
                     /locus_tag="VHD88_07080"
     CDS             3052..3453
                     /locus_tag="VHD88_07080"
                     /inference="COORDINATES: protein motif:HMM:NF024865.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HVS21593.1"
                     /translation="MSAPQTVQHDPKTEAAIRAVLDAQTAAWNRGDLEGYMDGYDRSP
                     NTEFVSGDRINRGWQAVLDRYKKSYDSREKMGVLTFSDLEITVLSKDAALVLGRWRLK
                     RANDEPHGTFSLLFRKTKAGWRIVHDHSSAA"
     gene            3543..4973
                     /locus_tag="VHD88_07085"
     CDS             3543..4973
                     /locus_tag="VHD88_07085"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HVS21594.1"
                     /translation="MDEKSDTSSNLAAIEREVEQHTAVFKKELGLFDLVLIQVVFVVG
                     TVWVGWAAKLGNHQMFFWLLAMLTFYLPLAAVVIYLNRLMPLEGGLYQWAKLAFGDFV
                     AFLVAWNLWVFGILVMSGIGLIIKKNIAYAIGPRADWMHDNKWVTTVVCVLLMVSVIA
                     ASRRGLALGKWVQNFGGMLLILTFATLILLPFISAGRGSLNNYHPLSLRFPEFSTYNI
                     NVCSKLAVGALSGFEYIAILAGECRAPARNIARSVWISAPIIALMFILGTGSVLAFVS
                     PDKVDLIGPIPQVLSLGFSSFGWVSALVSLTIFGVAARQIALMSIYFAGNSRLPMVAG
                     WDDLLPAWFTRLHERYRTPVNSILFVGMITLVFSLVSLIGVREQEAFQLQDNAAGVFY
                     AVIYMVLFAIPIVAMKRFGAKAPLWLKVASASGFLVSVIYAFFTVFPIIDVSSRLMFA
                     LKIIAVVVAANAIGAVLYALGRKRAK"
     gene            5045..>5273
                     /locus_tag="VHD88_07090"
     CDS             5045..>5273
                     /locus_tag="VHD88_07090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21595.1"
                     /translation="MGKINFGRVLLGGIVAGILLNIGEFVLNEKVLGAQMKAFFTGHN
                     FKEPAGSFIPIAVGLTFVLGIVIVLGYAAIRP"
BASE COUNT         1105 a         1408 c         1469 g         1291 t
ORIGIN      
        1 ggaagaatgc tcggctctat gattcttaac ccagaaagat tcagcattta gtttttctgc
       61 cgtctgcttc ctgccgcctg cctccttcct cttgccgcct acatctcatg ccgattcgcc
      121 agcgccttat ccatcgtcac ttcgtcaacg tattccagat cgcttcccac cggcattccc
      181 atcgccagac gagtgacgag caaacccaga ggctttaaca atcggctgat gtaattagcc
      241 gtagcttcac cttcggtgtt tgggttggtg gcgaggatca cttcatgaac ctcgacgcca
      301 tcgttgttct ccggcttgag tcgtggcagc agattatcca gacgcagatc gctgggacgg
      361 atgccgcgaa ttggagagag cgatccgtgc agaacgtgat agaggccttt gtagctgcgc
      421 gttttctcga ccgccaccaa atcgtaaggt tgctcgacta tgcagagcat tgagcgatcg
      481 cgtgatggca atgagcagaa acgacaggga ttgacgtcag taaggttgtt gcagactgaa
      541 cattccgtga tgcgctcttt gacttcatgc aacgcggcga tcaagcgctc aacgtcggct
      601 tcaggcgtgc gcagaatgtg aaatgcaagt cgctgcgccg acttctgccc aatgctcggc
      661 agacgcttga attcgtcgat tagtttggtc actggttcgg cgtaatcgag cataaaagaa
      721 gtgacaagtg gcaagtggca agtggcaagc tggacaagat gtgcttttga atgctttttc
      781 tcgtcacttg tcactcataa cttgtcacta aaagaggttt cccagtcccg gcggcagcat
      841 tgagcccagc ttgcttttca ttgcttcgtt aactttgcga ttggcttcgt tgatggccgc
      901 gacgatcatg tcttgaagca tctcgatgtc gttgtctttc acgatttcag gatcgactct
      961 gagcgagatg atttcgtgat cgcccttcat ctcgacagtc accacaccgc cgcccgccga
     1021 ggcgtcaacg cgcagctcgt ccatctcgcg cgccattttt tcctgcatct gctgcgcctg
     1081 cttcatcatc ccctgaatgt ttagcccgcc gggaaatttc atgtctctaa cctcgctgtt
     1141 tgtttttgaa aatctcggaa tcgcgcgacg cgagcatcct aactgccaac cgcgatgaat
     1201 gcaaagtcgg acacggcgtg acgcttcgct tctgttctcc cgcgtgttat aagcctgctt
     1261 tgacgatgaa cgagttgact acccgcgaca catcatccgc gtttgagcgc acgctcaccg
     1321 cggagattca gctttactac gacatggtgg cgcccgagtc tcggccggcg ccgctactca
     1381 ttgcgctgca tggctatggc gcaagcaagt ggcacgcaat gcgtgaagcg caagcgatcg
     1441 cgcccgaggg tttcgccatc gcatccttgc aaggtccgca tcagcatttg agagaaccga
     1501 aagcaccggg cgggccttta cggtttggct tcggatggct gaccaacttt cgtcctgaag
     1561 aatcggttgc gatgcatcat cgcgccctgc ttgagatgat cgacacgctg aatcgtgaag
     1621 gcgtcgccaa cccaaagcaa gtatttctgc ttggtttttc gcaatcatgc gcgctgaatt
     1681 atcgattcgc gtttacgcat ccagacgtta tgcgcggcgt gattggaatc tgcggcggac
     1741 tgcccggcga ttgggagacg aacgaacatt acaaaccaac cgatgcggcg gtattccatt
     1801 tggccggtga gcgcgatgaa tactatccgc cggctcgcgt caacgattat gccgcgcaac
     1861 tgcgaaaccg cgctcgcgat gttgaattca agagttatga tgccgaccac gagattgttc
     1921 aatcgatgcg agatgatatt cgggagtggt tgcaacaaaa gagtgcttag aatgaagagt
     1981 acctcgatcc aaccgtctct ggttcttgcg tgcgcgctac tgctgacggc agcgtgccag
     2041 aagcaacacg ctgcgaaacc gctgaagcca ccagagcagc agacggagac gcgcgcgctg
     2101 ccggctaaga gttctccgca gctaaacctc gtcatcgaca atgcgattga tcaagtcggc
     2161 aagaccactg gttacgacgc ttcgtatcag aaacttgagt acccgaacgg cgacgtgccg
     2221 attgaaaccg gcgtttgctc tgatgtggtt gtgcgcgcgt ttcgcaaagg cgggatcgat
     2281 ttgcagaaag aagttcacga agacatgaag ggaaattttt ccgcttaccc aacgcgctgg
     2341 ggattgagcg ggcctgacgc gaacatcgac catcgtcgcg tgccgaattt acaaacttac
     2401 tttactcgca aagcgaaatc actggcgaca acgggcagca gcgagacatt cttgccgggc
     2461 gatattgtca cctgggatct cggcaacaac acggatcatg ttggcatggt cgtgaatgtc
     2521 tggtacaagc cttcacagcg atacctgatc atccataaca ttgacgccgg cacgcgcatg
     2581 gaagacgttt tgttcgcgtg gaagatgacc gggcattatc gttatttcta gcctgaggat
     2641 ttatgaaagg acgtaattga gtccgcggag cggacgcatg aaaatagcac agcacttcag
     2701 tgctgggtac gcagcaagta gtgtagaggc aagccgtgaa acgggcgaca gaggtagaga
     2761 accgggagcg gtagcgaccg ggttgttttg tctgttatga atccgatttc ttgccgacga
     2821 tggacccgct cgctaccgct cgcggttctg taccgacctt tctgccgtac gcttcgcgga
     2881 ctggtgttcg ataaaacgct ccttcccagc gatgaatcgc tgggctgttt tcgcttcgcg
     2941 gactgcgaat cctgaacccg aaatcgacga aatgaggtga gtgggatgaa atatttcttc
     3001 tgcgtgtgct tggttgttgc ggctgtcgcg atttaccccg tgccgaaatc attgtcagca
     3061 ccgcaaacag tccagcacga ccccaaaaca gaagctgcca tccgcgcggt gctcgacgcg
     3121 caaactgccg cctggaatcg cggcgatctc gaagggtaca tggacggcta tgatcgctcg
     3181 ccgaacacag agttcgtttc cggcgatcgg atcaatcgtg gttggcaggc cgtgcttgat
     3241 cggtacaaga aaagctacga ctcgcgcgag aagatgggcg tgctgacatt ttccgatctt
     3301 gaaatcacag tgttgagtaa ggacgccgcg ctggtgttgg gacgatggcg tctgaaacgc
     3361 gcgaacgacg agccgcacgg aactttttct ttgctgtttc gaaaaacgaa agccggctgg
     3421 cggattgttc acgatcacag ttcggcagcg tgaagccggg agcgcgggca tcctgcccgc
     3481 attgagcgcg aagcgcgaac agagttttgt tttggcgctt ctgatcttct cagactctag
     3541 ttatggacga aaagtccgac acctcttcaa atctcgccgc catcgaacgc gaagtcgaac
     3601 agcacacggc cgtcttcaaa aaagaactcg gcctgttcga tctcgtgctc atccaagttg
     3661 ttttcgtagt gggcacggtc tgggttggtt gggcggccaa gctcggcaac catcagatgt
     3721 ttttttggtt gctggcaatg ctcactttct atttaccgct ggccgccgtc gtgatttatc
     3781 tcaaccgcct gatgccgctc gaagggggct tgtatcaatg ggcaaagctg gcgttcggcg
     3841 atttcgtggc gttcttggtc gcgtggaacc tttgggtctt tggcattctg gtgatgtccg
     3901 gcatcggact gatcatcaag aagaacattg cgtatgcgat cggaccgcga gccgactgga
     3961 tgcacgacaa caagtgggtg acgacggtcg tctgcgtgtt gttgatggtt agcgtgatcg
     4021 ccgcttcacg acggggcctg gcgctcggca agtgggtgca gaatttcggt ggcatgttgt
     4081 tgattctgac attcgccacg ttgatcctgc tgccattcat cagcgccggc cgtggttcgc
     4141 taaacaacta tcatcccctc tcgctcaggt tcccggagtt cagtacttat aacatcaacg
     4201 tctgcagcaa gctcgcagtc ggcgcgctgt cgggttttga atacatcgcg attctggccg
     4261 gcgaatgtcg cgcgccggcg cgcaacatcg cccgctcagt ttggatctcg gcgccaatca
     4321 tcgcgttgat gtttattctc ggcacgggct ccgtgctcgc gtttgtctcg cccgacaaag
     4381 tcgatctgat tggcccgatc ccgcaagtgc tgagtctggg attcagttcg tttggttggg
     4441 tatcagcgct cgtctcgctc acgatcttcg gagtagccgc aagacaaatc gctttgatga
     4501 gcatttattt tgcgggcaat agccgcctgc cgatggttgc gggatgggac gatctgctgc
     4561 ctgcatggtt cacgcgactg cacgagcgtt atcgcacgcc ggtgaactca attctcttcg
     4621 ttggcatgat cacgctggtg ttcagtctcg tgagtctaat cggcgtgcga gaacaagaag
     4681 cgtttcaatt acaagacaat gctgccggtg tgttttatgc cgtgatctac atggtgctgt
     4741 ttgcaattcc gattgtggcc atgaagcggt tcggcgccaa agctccgctg tggctcaagg
     4801 tcgcatccgc ttccggcttt ctggtatcag tgatctacgc cttctttacg gtgtttccca
     4861 tcatcgatgt cagcagtcgc ttgatgtttg ccttgaagat tatcgccgtc gtcgtcgctg
     4921 ccaacgcgat cggcgcggtg ctatacgcgc tcggcagaaa gcgcgccaaa taatgctggc
     4981 cttccaatcg atcctgtgat aatcatctcg cgctccagaa tcaaacccca gtgaggagac
     5041 aattatgggc aagatcaatt tcggacgcgt tctgctcggc ggtatcgtgg caggcatcct
     5101 tttgaacatc ggtgagtttg tgctgaacga aaaggttttg ggcgcgcaga tgaaagcgtt
     5161 cttcaccggc cacaatttta aggagcccgc cggaagcttc atacccatcg cggtgggcct
     5221 gactttcgtg ctcggcattg tcattgtact tggatatgcg gcgatcaggc ctc
//
LOCUS       DASZZE010000368         2373 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_237663, whole genome shotgun sequence.
ACCESSION   DASZZE010000368 DASZZE010000000
VERSION     DASZZE010000368.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2373)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2373)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2373
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_237663"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..399
                     /locus_tag="VHD88_07095"
     CDS             <1..399
                     /locus_tag="VHD88_07095"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HVS21596.1"
                     /translation="GEFQLMGKDAQLQFIQRAQTEVLGEVQRAEITFYSINPSGQTMH
                     LNVRTARSEEGMERIAQATGGTAFIPKGDSDLDGIFRRIASEIRSQYLIQYYSNNQST
                     GRAFRRIAVSAPAQPQLRVRAREGYYPKAK"
     gene            489..920
                     /locus_tag="VHD88_07100"
     CDS             489..920
                     /locus_tag="VHD88_07100"
                     /inference="COORDINATES: protein motif:HMM:NF015690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF309 domain-containing protein"
                     /protein_id="HVS21597.1"
                     /translation="MQGPAPFYNEEHVVAYPVEYIAGIDLYNAGEFHAAHDAWEERWM
                     GPVAPDERLFLQAMIQSAVAFHHLQIGRPGAARQMYLRAKEKFVRLNQRVFMSLDLED
                     YQAQLDRALSWLLSVPDPRELKQPELKPPVIRLLPGITAFE"
     gene            936..1436
                     /locus_tag="VHD88_07105"
     CDS             936..1436
                     /locus_tag="VHD88_07105"
                     /inference="COORDINATES: protein motif:HMM:NF025046.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HVS21598.1"
                     /translation="MRAIVKTLRVLALGAWLGAAIFFGAAVAPNLFDVLRGAHLPNAN
                     ELAGTIVTRLLAIINIAGFAISLAVIATANLASDIKNRPARWVEMISLAIMAIMTGVS
                     QWIISARMLALRAAMQAPIDQIARDDPRRVAFDSLHGYSVAAMGVAVVAGLIAFVIIS
                     GARDRT"
     gene            1531..2340
                     /locus_tag="VHD88_07110"
     CDS             1531..2340
                     /locus_tag="VHD88_07110"
                     /inference="COORDINATES: protein motif:HMM:NF019003.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050485 - oxidoreductase activity, acting
                     on X-H and Y-H to form an X-Y bond, with a disulfide as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine/sarcosine/betaine reductase
                     selenoprotein B family protein"
                     /protein_id="HVS21599.1"
                     /translation="MEVIEQLNCWRDQYGTWKSKPLSESTESVGSYPFVENEHAPFTP
                     ARRALPMLNLALISSAGSYIDGTERFDTSAPYGDLTLREIPSEIDLSDLRFSARGYDS
                     TFVQQDANVQIPLARLFEFESNRVIGQVNSTFWSFCGFIPDAGRLVNELLPKLVERVK
                     RYEVQAALLIPASRLCHQSIALAARAIESAGIPTMTLTVDREIMESVRPPRAAYYEGQ
                     LGSVAGKPNWPEHQRRILDEALRWIEPMDEPEISKLAVELESQVQHSRGER"
BASE COUNT          520 a          663 c          682 g          508 t
ORIGIN      
        1 ggcgaatttc aattgatggg aaaagacgcc caactccaat tcatccagcg agcgcaaaca
       61 gaagtgctgg gcgaagtaca acgcgccgaa atcaccttct attcgatcaa tccgagcggc
      121 caaaccatgc atctgaatgt gcgcacggcg cgatccgagg aaggcatgga acgcatcgcc
      181 caagcgacgg gcggcacggc tttcattccc aagggcgaca gcgatctcga tggcatcttt
      241 cgccgtatcg cgtctgagat tcgctcgcaa tatctgattc agtattactc aaacaaccaa
      301 tccaccggac gcgcctttcg ccgcatcgcg gtcagcgcgc ccgctcaacc gcagttgcgc
      361 gtacgcgcac gcgaaggtta ttacccaaaa gcgaagtaat ggagcgcagg catccttgcg
      421 tgcggttcgc cgcatcctgc cggcgagtcg ctgcgtcttg atcctttaat cagctacaat
      481 gattctgcat gcaaggcccg gcgcccttct ataatgaaga acacgtcgtc gcatatcccg
      541 ttgagtacat tgcggggatc gacctctaca acgccggcga atttcacgcg gcgcatgatg
      601 cgtgggaaga gcgttggatg ggcccagtcg cgcccgacga gagacttttc ctgcaagcga
      661 tgattcaatc cgccgtggcg tttcatcacc tgcaaattgg ccgacccggc gccgcacggc
      721 aaatgtatct gagggccaaa gaaaagtttg tgcgtttgaa tcagcgcgtg ttcatgtcgc
      781 tcgatctcga agattaccag gcgcaactcg atcgcgccct ttcatggttg ttgagtgttc
      841 ccgatccgcg cgagctgaag caaccggaac ttaagcctcc cgtgatcaga ttgctgccgg
      901 gaataactgc gttcgaatga cggagaaaga atggcgtgag agcgatcgta aaaactctgc
      961 gggtgttggc gctcggtgcg tggcttggtg ctgccatttt ctttggcgct gcggtcgcgc
     1021 cgaatttgtt tgacgttctc cgcggcgctc acttgccaaa cgcgaacgaa ctcgccggca
     1081 cgatcgtgac ccgtctgctc gcgatcatca acatcgctgg ttttgcgatc agcctcgccg
     1141 tgatcgcaac tgccaacctc gcgagcgaca ttaagaaccg gccggcgcgt tgggttgaga
     1201 tgatttcgct cgcgattatg gctatcatga ccggcgtcag tcagtggata atctcagcgc
     1261 gaatgctggc gctgcgcgcg gccatgcaag cgccaatcga tcagatcgcg cgcgacgatc
     1321 cgcggcgcgt cgcgtttgat agtttgcacg gatactcagt cgctgcaatg ggagtcgcgg
     1381 ttgtcgccgg tttgatagca ttcgtgatca tcagcggcgc gagagatcga acctgattcg
     1441 ggacagtagc ccgaccgtga ggaagggctt gtcagtacca cctgcggtta gcgggtggat
     1501 gatctgtgga gattgaagga agcctaaaca ttggaagtca tcgaacaact caattgctgg
     1561 cgcgaccaat acggaacgtg gaagtcgaag ccactctctg agtcaaccga aagtgttggc
     1621 agctatccgt ttgtagaaaa cgaacatgcg cctttcacac cggcgcgccg agctttgccc
     1681 atgttgaatc tcgcgttgat ctcttcggcg ggttcgtaca tcgacggcac cgaacgtttc
     1741 gacacaagcg caccgtacgg cgatctcacg ctgcgagaaa ttcccagcga gattgacttg
     1801 agtgacttac gcttttccgc gcgcgggtac gactcgactt tcgttcagca ggatgcgaat
     1861 gttcaaatcc cgttggcacg cttgttcgag ttcgaatcca atcgagtcat tggtcaagtt
     1921 aattccacgt tctggagctt ttgcggattc attccggatg ccggcagatt ggtgaatgaa
     1981 ctacttccca aactcgtcga gcgcgtcaag cgttacgaag ttcaggccgc gctgctgatt
     2041 cccgcatcgc gtctctgtca tcagtccatc gcgttggcag cgcgcgcgat cgaaagcgcc
     2101 ggcattccga cgatgacgtt aacggttgat cgggaaatca tggaaagcgt gcgaccgccg
     2161 cgcgcagctt attacgaagg ccaactcggc agcgtcgcgg gcaagccgaa ctggcccgag
     2221 catcaacggc gcattctgga tgaagcgctg cgttggatcg agccgatgga tgagcccgag
     2281 atttccaaac tggcagtgga actcgaaagc caggtacagc actcccgagg tgaaagatag
     2341 ggtcagaagc ccgaccgtca ggaagggctt tct
//
LOCUS       DASZZE010000369         2402 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_78753, whole genome shotgun sequence.
ACCESSION   DASZZE010000369 DASZZE010000000
VERSION     DASZZE010000369.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2402)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2402)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2402
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78753"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1037)
                     /locus_tag="VHD88_07115"
     CDS             complement(<1..1037)
                     /locus_tag="VHD88_07115"
                     /inference="COORDINATES: protein motif:HMM:NF024724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HVS21600.1"
                     /translation="MVRIEEICEKVRRNHPQADLNLLRRAYLFSAREHKGQKRASGES
                     YLVHPLEVANILADMRLDAVSVSTGLLHDVVEDTLADTETIRNYFGDEVAHLVEGLTK
                     IAHISNVTREEQQAENVRKMLLAMVNDVRVVLVKLADRLHNMRTLEFLSPEKRRRIAQ
                     ETMDIYAPIAHRLGMGKLRGELEDLAFRNLHAEDYRELTAQLEKRRAANEAFLNDVTA
                     TIQEKMQEASVPFVRIEGRVKRLYSIWMKLGTQEIDLDQVYDLVAARVITPDEIRYCY
                     AALGVIHNAWKPVPGRFKDWIATPRDNLYQSLHTSVIGSKGQPFEVQIRTEQMHRIAE
                     EGVAAHWKYKEG"
     gene            complement(1245..2090)
                     /locus_tag="VHD88_07120"
     CDS             complement(1245..2090)
                     /locus_tag="VHD88_07120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21601.1"
                     /translation="MRFSRSRIGATAILALFAAASAGCTLVNKVRAKNELNESARVYK
                     EGHFEEAEAHAKRALYLDPNNPTAPIFIARVIHQQYKPGVDQPDNIMKAHEAIDAYQQ
                     VMARDPNNEEAYKAISVLYAAIKDDQHLRDWISKRANDSSMSSEKRAEAFAILAGKDW
                     DCSFKITELPDVKVSKEGGAPGFTYKKPKEQKDFDTAERCVVRGLEEAETAIKYDPNN
                     ESAWSYKTNLLLEDAKFAEMNGDATKKAQYQSQADAANKRATALAEEQRKKEEAANAA
                     ASPTP"
     gene            complement(2197..>2402)
                     /locus_tag="VHD88_07125"
     CDS             complement(2197..>2402)
                     /locus_tag="VHD88_07125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21602.1"
                     /translation="QTFQQRREQRAYKVGMETSNLPEEQKIEKTVFVKAPRALHYGDV
                     VKVIDAIKGAGANPVGLQVDDLP"
BASE COUNT          447 a          684 c          661 g          610 t
ORIGIN      
        1 ccttccttgt atttccagtg cgccgccacg ccttcttccg ctatgcgatg catttgctca
       61 gtgcggattt gcacctcgaa cggctgccct ttggatccaa tgacggacgt gtgcagcgat
      121 tgataaagat tgtcacgcgg cgtcgcaatc cagtccttga agcggcccgg tacgggcttc
      181 cacgcattgt gaatcacgcc cagcgccgca taacagtaac gaatctcgtc gggggtgatc
      241 acgcgcgcgg caacgagatc gtaaacttgg tcgagatcga tctcctgtgt gccgagcttc
      301 atccagattg agtagagtcg cttcacgcga ccttcgatac gcacgaacgg cacgctggct
      361 tcctgcatct tttcctgaat cgtcgcggtc acgtcgttaa ggaaagcctc gttggcggcg
      421 cggcgctttt ccagttgcgc ggtgagttcg cgatagtctt ccgcatgaag atttcggaaa
      481 gccaggtctt ccagttcgcc gcgaagtttg cccatgccca ggcggtgagc gatcggcgcg
      541 tagatatcca tcgtctcttg cgcgatgcgt cgccgctttt cggggctgag gaattccagc
      601 gtgcgcatgt tgtgcaaacg gtcggcgagc ttcaccagca cgacccgcac gtcgttaacc
      661 atcgccagca acatcttgcg aacattttcc gcttgctgtt cttcgcgcgt gacgttgctg
      721 atgtgcgcga tcttagtcag gccttcgacc agatgcgcga cttcatcgcc gaagtaattg
      781 cgaatcgtct cggtgtccgc gagcgtgtct tccactacgt cgtgaagcag tcccgtagag
      841 accgagacgg cgtcgagccg catgtcggcc aggatatttg cgacttccag gggatgcacg
      901 aggtaggatt cgcctgacgc gcgcttctgt cccttgtgct cacgcgcaga gaaaaggtaa
      961 gcgcggcgca gtagattgag gtcagcctgc ggatggttgc gcctgacctt ctcgcaaatc
     1021 tcttcaattc gaaccataag aaaagcagtg gagatgtcag tgttcagctt tgacttcgcc
     1081 ggttcaacac cgagccactg atcactgacc accgatcaca gaccactgca agcaattata
     1141 gcaataggtg acgctcgacc ctaaagtctg cgtcacctat tcgatagctt gctcgctaag
     1201 tcttgcggtt tattagttcc ctgcggtatc agggttcgtc atcttcaagg agtcggcgaa
     1261 gccgcggcgt tggccgcttc ctctttcttt cgctgctctt ccgccagggc cgtggctcgt
     1321 ttattcgccg cgtccgcctg actctggtac tgagctttct tggtagcgtc gccattcatc
     1381 tcggcgaatt tcgcgtcctc aagcaagagg tttgttttgt aagaccaggc tgactcgttg
     1441 ttgggatcgt atttgattgc cgtctccgct tcctcaagcc cacgcacgac acagcgctcc
     1501 gcagtgtcaa aatctttctg ctctttcggc ttcttgtaag taaaacctgg cgcgccgcct
     1561 tccttggaca ctttgacgtc gggaagttcg gtgatcttga acgagcaatc ccaatccttg
     1621 ccggccagaa tcgcgaacgc ttcggcgcgc ttctcgctgc tcatactgga atcattcgct
     1681 cgctttgaga tccaatcgcg caagtgttgg tcgtccttga tggcggcata tagcactgag
     1741 atggccttgt acgcttcctc gttgttggga tcccttgcca tgacttgctg gtaagcatcg
     1801 atcgcctcgt gagccttcat aatattgtcc ggctgatcga cgccgggctt gtattgttga
     1861 tggatcacgc gcgcgatgaa gatgggggcg gtcgggttat tggggtcgag gtacaacgcg
     1921 cgtttggcgt gcgcctcggc ttcttcgaag tggccttctt tgtaaacacg cgcgctttca
     1981 ttcagctcgt tctttgctct tactttgtta acgagcgtac agccggcact ggcggcggca
     2041 aacaaagcca ggatcgcggt ggctccgatc ctggaccgag agaatctcat tgcggttagc
     2101 tccgttttaa gtgaagatga cgccgaactg gccagcaagc gagaaaagcc atcctggcgg
     2161 aaagaacccg ccggcggtta tcgtcacagt ttctaactac ggcagatcgt caacctgcaa
     2221 accgacggga tttgcgccgg cgcctttgat ggcgtctatg accttcacaa catcgccgta
     2281 atgcagcgca cgcggcgctt taacgaacac tgtcttttcg attttctgct cttcaggcaa
     2341 gtttgatgtt tccatgccga ccttgtaggc gcgctgttcg cggcgctgct ggaacgtctg
     2401 ct
//
LOCUS       DASZZE010000370         5121 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_95160, whole genome shotgun sequence.
ACCESSION   DASZZE010000370 DASZZE010000000
VERSION     DASZZE010000370.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5121)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5121)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5121
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95160"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..871)
                     /locus_tag="VHD88_07130"
     CDS             complement(<1..871)
                     /locus_tag="VHD88_07130"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: protein motif:HMM:NF006667.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004739 - pyruvate dehydrogenase
                     (acetyl-transferring) activity [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex E1 component
                     subunit beta"
                     /protein_id="HVS21603.1"
                     /translation="MAVMTMRDALNLALREELARDPDVFLMGEEVAEYQGAYKVTRGL
                     LEEFGPKRVIDTPITELGFAGLGVGAAMAGLRPIVEFMTFNFSILATDQIINSAAKML
                     YMSAGQFKIPIVFRGPGGSAYQVSSQHSQALESWYAYFPGLKVVMPSTPADAKGLLKS
                     AIRDDDPVIFIEQERMYGMKGEVPEDANFTIALGVAEVKREGTDATIVARSLMVPAAL
                     RAAEELEKVGVSCEVIDPRTIRPLDIEAIVASVKKTNRVVVAEESHPFCGVGAEISAE
                     INERAFDYLDAPVK"
     gene            complement(897..1949)
                     /gene="pdhA"
                     /locus_tag="VHD88_07135"
     CDS             complement(897..1949)
                     /gene="pdhA"
                     /locus_tag="VHD88_07135"
                     /inference="COORDINATES: protein motif:HMM:TIGR03182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045250 - cytosolic pyruvate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0004739 - pyruvate dehydrogenase
                     (acetyl-transferring) activity [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring) E1
                     component subunit alpha"
                     /protein_id="HVS21604.1"
                     /translation="MSASATGVIDAAMERTDELSGLRASQSGDLQEDRETLVDLLHQM
                     MLIRRFEEKSAESYSLGKIGGFCHLYIGQEAVGVGAISAVRPNDYVITSYREHGQAIA
                     KGIPANAVMAELFGKSGGCSRGKGGSMHLFDKSVNFLGGHAIVGAQIPLATGVAFATK
                     YKETDQVTLCFFGEAAVNQGAFHESLNLAQLWKLPCIYICENNKYGMGTSLARAMSSQ
                     NVAQKAREYDLASEFVDGMDVMAMRRATQRAVERARKESLPTLIEARTYRYMGHSMSD
                     PGNYRTRAEIEKYQERDPIKLFTAALREQKILTDRDLSDMEAAIKEQIEQAVRFAEES
                     PEPDPKELYTNVYAKA"
     gene            complement(2154..4688)
                     /locus_tag="VHD88_07140"
     CDS             complement(2154..4688)
                     /locus_tag="VHD88_07140"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HVS21605.1"
                     /translation="MSKINWKSLLLITSVALAGTGLLLGGVLWTLRLPILGWSGLLAF
                     GGLLVLTLVSSRFTVPVTNVDGISQTHKSVADAFIFLAVMMYALAPANNLGPPIVLAA
                     LVGLASTVYFVERWPSLFAVGASIISTFAASLVYRSMVLLLAGGVLDANERGLVLDLL
                     LFPLCVFGIVQYTLSTFGTVAFNSFFSGKARAVVSHESLVWTLITQVANVTAAALFYA
                     AIHGAGVPFFFVGILIVALVHLLYRFNEKRLSEVTRAQAEKVRYVEEIADLHMNTIES
                     LAIAIDAKDQTTHGHVRRTQIYATEMGKLLKISEPESRALVAGALLHDIGKLAVPEYI
                     LNKPGKLTESEFAKMKIHPTVGGDILKRVNFPYPVEDVVRYHHEKWDGSGYPKGLRAE
                     QIPLVARIISVIDFYDATRCDRPYRKGMKREESLALLQKMAATSFDPRLVDLFTKHVG
                     EFDALIGQQDIQEQVPSENIDLVTKARPDAGLAPDVLGAPDGNTGFRSITQAQREVFA
                     LHEIAQTIGSSLNMNDTVTLVSNKLRAIVPFDTCIIFIVDDQLGKAIAMHVVGDNAEL
                     FAQRRISVGDGITGWVIANARSMCNSSPELDLAGLPDDISRNYRGVLVSPLIREDGAF
                     GAITLYSKGRTSYTTEHVRLLESVAQHAASALNNAITFEKTKESALTDQLTELPNARG
                     FYMMLEQRLAECQRLNRESLALISMDVDDFKKINDQWGHAIGDRLLASVARVIRKELR
                     QMDILSRYAGDEFVAIMPMASQTMSEMVGERIRQAVAAHKFSVRTGKNVTVTISIGVA
                     CFPVNGETTEELLTTAARNMQRDKHTRKNLLNLSTMPTPARIDHYT"
     gene            complement(4906..>5121)
                     /locus_tag="VHD88_07145"
     CDS             complement(4906..>5121)
                     /locus_tag="VHD88_07145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21606.1"
                     /translation="NDLLQVLWQTYLPNRVIACATKAADQAAAVIPFLRGRTDSRLPT
                     AFVCCDGTCQIPSTHPADFGLQLEARS"
BASE COUNT         1114 a         1459 c         1469 g         1079 t
ORIGIN      
        1 gcttcaccgg cgcgtcgaga taatcaaaag cgcgctcgtt gatctcggcg ctaatttcag
       61 ccccgacacc gcagaaggga tgtgactctt ccgcgactac cacgcgattc gttttcttca
      121 ccgatgcgac aatcgcttcg atatccaaag gccgaatcgt gcgcggatcg atcacttcgc
      181 atgacacgcc tactttctcc agttcctcgg ctgctctgag cgccgcggga accatcaaag
      241 accgggcgac gatcgttgcg tccgtgcctt cgcgttttac ctcggcgacg ccgagcgcaa
      301 tcgtgaagtt cgcgtcttct ggaacttcac ccttcatccc atacatgcgc tcctgctcaa
      361 tgaagattac gggatcatca tcgcgaatcg cgctcttcaa aaggcctttt gcgtccgccg
      421 gcgtcgaagg catgacgact tttaagccgg gaaagtacgc gtaccatgat tcgagcgcct
      481 gcgaatgttg cgatgaaact tgataggccg agccgcccgg tccgcgaaac acaatcggaa
      541 tcttaaactg accggccgac atgtaaagca tcttggccgc ggagttaata atttgatcgg
      601 tggctagaat cgaaaagttg aacgtcatga actcaacaat cggccgcagg ccggccatcg
      661 cggcgccgac gcccagcccg gcgaatccca gttcggtaat cggcgtgtcg atgacccgct
      721 tcggcccaaa ctcttccagc aatccgcgcg tgaccttgta tgcgccctga tactcggcga
      781 cttcctcgcc catgagaaac acgtccgggt cccgcgctaa ttcttcgcgc agggccaggt
      841 tcaacgcatc tcgcatggtc attacggcca ttggtcaatt ctcggatcga gaaagtttac
      901 gctttggcgt aaacgttcgt gtacagctct ttcggatctg gctcaggact ctcttcagca
      961 aagcgcacag cttgctcgat ctgctctttg atcgcagctt ccatgtcgga aaggtcgcga
     1021 tcggtaagaa tcttttgttc ccgtagcgcc gcggtgaaaa gcttgatcgg atcgcgctct
     1081 tgatattttt caatttcggc gcgagtgcga tagttgcccg ggtcggacat cgagtgaccc
     1141 atgtagcgat aggtgcgcgc ctcgatcaag gtgggcagcg attccttgcg cgcacgttcg
     1201 acggcgcgct gggtcgcgcg gcgcatcgcc atcacgtcca tgccatccac gaactctgaa
     1261 gccaggtcgt actcgcgagc tttctgcgcc acgttctgcg acgacatggc gcgcgccagc
     1321 gaagtcccca tgccgtactt gttgttctcg caaatgtaaa tgcagggcag cttccacagt
     1381 tgcgccagat tcagcgactc gtgaaaagct ccctggttga ccgccgcctc gccaaagaag
     1441 cagagcgtca cttgatcggt ctctttgtat ttcgtggcaa aggccacgcc cgtggccaac
     1501 ggaatctgcg cgccgacgat cgcatggccg ccgagaaaat tcacgctctt atcgaacaag
     1561 tgcatcgagc cacccttgcc acgcgaacag ccgcccgact tgccgaacaa ctccgccatc
     1621 acagcgttgg cggggatgcc tttcgcgatt gcttgtccgt gctcgcgata gctggtgatc
     1681 acgtaatcat tcggacgaac cgcggagatg gcgccgacgc cgactgcctc ctggccaatg
     1741 tacaaatgac agaagccgcc aattttgccg aggctatagg attccgcgga cttctcttcg
     1801 aagcgccgaa tcaacatcat ctgatgaagg agatcaacga gcgtttcgcg atcttcctga
     1861 agatccccgg actgtgaagc tcgaaggccg gagagttcgt ccgtacgctc catcgcggca
     1921 tcgatcacgc cggtcgcgct ggcactcact ctatgtctgc ggtccgtggt ctggctgctc
     1981 atcaagaaac gcgtcgctgg cctaatgaat cggccagctt atcgctggcc tgtaaatagt
     2041 accttgagtt aactggggcg attatacgcg agacgcgcgg ctagacaaaa ccagcaaaag
     2101 aaaagcgcgc cagacgaacc ccagcgcgcc ctggtcccgt gattggaaat ctctcaggtg
     2161 tagtggtcaa ttctcgccgg cgtgggcatc gttgacaggt ttagaagatt cttgcgtgtg
     2221 tgcttgtcgc gttgcatgtt ccgcgcggcg gtggtgagca actcctcagt tgtctcgccg
     2281 ttaactggga agcaggcaac gccgatgctg atcgtaaccg ttacattctt gcccgtcctg
     2341 accgagaact tgtgggccgc aaccgcctgt cgaattcttt ctccgaccat ttcggacatc
     2401 gtctgagatg ccatcggcat gatcgccacg aattcgtcgc ccgcatagcg ggaaagaatg
     2461 tccatctggc gcagctcttt gcgaatgacc cgagctacgc tggccagcag gcgatcgccg
     2521 atggcgtgtc cccactgatc gttaattttc ttgaagtcgt cgacgtccat gctgatcaaa
     2581 gcgagcgact cgcgattcag gcgctgacac tcggccagtc tttgctcgag catcatgtag
     2641 aagccgcgcg cgttcggcaa ctcggtaagc tggtcggtga gcgcgctttc tttcgtcttc
     2701 tcgaaagtga tcgcgttgtt cagcgccgag gccgcatgct gagcgaccga ctcgagcagg
     2761 cgcacgtgct cggtagtgta ggaggtgcgg ccctttgaat agagcgtgat cgctccaaag
     2821 gcgccgtcct ctcggataag aggcgagacc agaacgccac gataattacg cgaaatgtca
     2881 tccggcagtc ccgcgaggtc aagttcgggc gatgagttac acattgagcg agcgttcgct
     2941 atcacccagc cggtgatacc atcacctacg ctgatgcgac gctgcgcaaa gagctctgca
     3001 ttatcgccaa cgacgtgcat cgcgatcgcc ttgcccagct gatcgtccac aataaagatt
     3061 atgcaggtat caaacggcac gatagcccgc agtttgttcg agacgagcgt gaccgtgtca
     3121 ttcatgttta gagatgaacc gattgtctgc gcgatctcgt gcagcgcaaa cacctcgcgc
     3181 tgtgcctggg tgatcgagcg aaagcccgtg ttgccgtccg gcgcaccgag cacgtccgga
     3241 gccagaccgg catccggcct tgccttggta accagatcga tattctctga ggggacctgt
     3301 tcctgaatgt cctgttggcc gatcagcgcg tcgaattcac ctacgtgctt ggtgaacaga
     3361 tcgacaagcc gcggatcgaa tgacgtagca gccatttttt gcagcagcgc cagtgactct
     3421 tcgcgcttca ttccttttcg gtaaggacga tcgcatcggg tcgcatcgta gaagtcaatg
     3481 accgaaataa tgcgggccac tagggggatt tgctcggcac gaagtccttt cggatagccg
     3541 ctgccgtccc acttttcgtg gtggtatcga actacgtctt cgactggata aggaaagttg
     3601 acgcgcttga gaatatcgcc gccaactgtc gggtgaatct tcattttcgc gaactcggat
     3661 tcggtaagct ttcccggctt gttaagaatg tattccggca cggcgagctt gccgatgtcg
     3721 tgcaacagag cgccggcaac cagggcgcgc gactcaggct cgctgatttt caaaagtttt
     3781 cccatctctg tggcatagat ctgggtccgg cgaacgtggc cgtgggtcgt ctggtctttt
     3841 gcgtcgatgg caatcgccag cgactcgatc gtgttcatat gcaggtcagc gatctcttca
     3901 acgtaacgaa ctttctccgc ctgggcgcga gtcacttcgc tgaggcgctt ttcgttgaag
     3961 cgatacaaga gatggaccag cgcaacaatc aagataccga caaagaagaa cggcacgccg
     4021 gcgccgtgga tggccgcata gaacagggcc gctgcggtca cgttcgcaac ctgcgtgatt
     4081 agcgtccaaa ccagactctc gtgcgagacg acggcgcggg ccttgccgga aaagaatgaa
     4141 ttgaaggcaa cggtgccgaa tgtgctcagc gtatattgaa cgatgccgaa gacgcagagc
     4201 ggaaacagaa ggagatcgag gaccagcccg cgttcgttgg cgtcgagtac accaccggcg
     4261 agcaacagaa ccattgatct gtagactaac gaagcagcga acgtggagat gattgaggcg
     4321 ccgacggcga acagagaagg ccagcgctca acgaaataga ctgtcgaggc gagacccacc
     4381 agtgccgcga ggacgatcgg tggccccagg ttgttcgcgg gcgccagcgc atacatcatt
     4441 acggcgagaa agatgaacgc gtcggcaacc gacttgtgcg tttggctaat gccgtcgaca
     4501 ttggtgacgg gaaccgtaaa ccggctggaa accaaagtca ggacgagcag cccaccaaaa
     4561 gccagcagac cgctccagcc caggattggt aaccgcagcg tccataggac accgccgagg
     4621 agcaatcctg tgccggctaa ggcgacgctg gtgattagaa gcaggctctt ccagtttatc
     4681 tttgacatca agtaatccgg cgggcttggc tagctcaact gtgttaacgc gcggggacga
     4741 tcagagacga tacgcaaccg tggtggtcgg ccgttggcgg tgactagaca gtgaccaaca
     4801 tcgttggcca cccaagaata gcgggctgac acccgaatag tcaacggatt tcttcgcttt
     4861 gggccggggg aggaaccggt aaaagtggtg caaagtcggc gaaaatcaag agcgggcctc
     4921 gagttggagg ccgaagtcag cgggatgggt cgaggggatt tggcatgttc cgtcacaaca
     4981 gacaaaggcc gtgggcaggc gtgaatcggt gcgtccgcga agaaaaggaa taaccgctgc
     5041 cgcttgatcc gccgctttcg tggcgcaggc aatgacacga ttcggcagat aggtttgcca
     5101 gagaacctga agcaggtcgt t
//
LOCUS       DASZZE010000371         3675 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_323966, whole genome shotgun sequence.
ACCESSION   DASZZE010000371 DASZZE010000000
VERSION     DASZZE010000371.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3675)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3675)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3675
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_323966"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1153
                     /locus_tag="VHD88_07150"
     CDS             <1..1153
                     /locus_tag="VHD88_07150"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HVS21607.1"
                     /translation="KAAFRFIVCLGFVSLFADMTYEGAHSVIGPLLKDLGATATQVGI
                     IAGLGEMIAASLRYFSGRLADRTRAYWTITTLGYFLNLVVVPGLAFAGNWQAAALLII
                     AERTGKSLRGPARDVLLSEATEVVGHGKGFGLHAAMDQTGAVLGPLLVAASVARSHHF
                     GPAFLWLAVPAVGAFIALLFARAARPNKATPPPTPREIKFPSVFWIYVAAAGLLALGF
                     VDFPLLAYHFQESSLVKPEVIPLLYAGAMGVNGLTALLFGRLFDRYGIQIIVLGILVS
                     LLALPFGFLGGPTGVYVSVACWATGLGAQDATLRSGISQVVSMNKRGSAFGAFNAAYG
                     VLWFLGSVTMGVLYDYSLFALVVFGIAAQLIAAILFISLRRPLAVAARR"
     gene            complement(1170..>3675)
                     /locus_tag="VHD88_07155"
     CDS             complement(1170..>3675)
                     /locus_tag="VHD88_07155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21608.1"
                     /translation="HRSFANIAYLAPMTQPVEPSDPTKARITAVAFGGSSGLNLDLSV
                     DGGDNNDDYIGGFLQNYSPDAMQEFVVRTSQFDADTSRTNGGSVIISTRRGTDQWHGD
                     FGYYLRARAFNARNTLDNPEPNPKQPFSRHNGIAAFGGPLKTGKLWFFSSLEYVHENA
                     SIAYSALSLSEFRALARLASMGLIPGVRSIDVPTSVPVPFRDVLFSTRVDWFQSARSQ
                     WFFRGSLDRNHTHNDLIQQSTLPSTGAFTRSNYYSFLVNNQFQFNSIWLGTLTFQASD
                     FHHTKDRNSHIGLALAFPFSSTAITTSGFETFGDNQFVTGITAFPIRRDQRKYQFRYD
                     VARSGGKHAVKFGVNFICEPVLSGRLADDAETLVEFPGEPTFYVANPADFTADFAAGS
                     QFIPASNGTFSQNVKRLGLYVQDSWRIRPSFTLNLGLRYDTTFGLFRASGRNQDQNPA
                     VITLNALHIGLSPGIPHDYRRAFAPRLGFAYSAGRSTKTVIRGGVGLYYNDLNQNGWV
                     DAFRAVNEPFSGLLAPDEQGAVIDPNYHTPYALQFSFGVERVLSPTWRLNIHYEHQQG
                     VHQYRRYEYVSDFTLPASAPSISLFRTDNRSRYDGVAFLAQHSFSKRFELSAHYTLSS
                     AKTWGATVGELADYVNGVSDVRHAFGPGDYGPSGEDVRHRFVLAGTLRLPGKVELITL
                     SQFESARPYTLATPVDLNDDGLDSNDRAVVNGVQTSLDQFRGTPYYQIDLRVSRDFHW
                     GERTAIKPFVEFFNLLNRTNPGNNFIPDLSALPVPPGELDNAMHICLNTACTLKRPIR
                     SLRDLRVPAGALGDFFGPGTTVGIPFAAQLGVRVSF"
BASE COUNT          806 a          994 c         1071 g          804 t
ORIGIN      
        1 caaagcggcc tttcgattca tcgtctgtct cggctttgtc agcttgttcg cagacatgac
       61 ttacgaaggc gcgcacagcg tgattggccc gctgctcaaa gatctcggcg ccacggcgac
      121 gcaagttgga atcatcgcgg gcctgggcga gatgatcgcc gcgagcctgc gttatttctc
      181 aggacgactt gccgatcgta cccgcgcgta ttggacgatc acgacgctcg gatatttctt
      241 gaatctcgtg gttgtgcccg gactcgcgtt cgccggaaac tggcaagcag ccgcgttact
      301 catcatcgcg gagcgcacag gaaaaagctt gcgcggaccg gcgcgcgacg ttttgctttc
      361 agaagccact gaagtcgttg gacatggaaa aggtttcggg ctgcacgcag cgatggatca
      421 gaccggcgct gtcctggggc cacttctggt cgcagcttca gtagcgagat cacatcattt
      481 cggtccggcg tttttgtggc tggcggtacc cgcggtcggc gcgttcatcg ccttgctgtt
      541 tgcgcgcgcg gctcgtccaa acaaagccac gccacctccc acgcctcgcg aaataaaatt
      601 ccccagcgtc ttttggatct atgtagcagc cgcaggatta ttggcgctcg gctttgtcga
      661 ttttcctttg ctcgcttatc acttccagga gagttcgctc gtgaagccgg aagtgatccc
      721 gcttctgtac gccggagcga tgggcgtgaa tggtttgact gcgctgttgt ttggcagact
      781 gttcgatcgc tacggaattc aaatcatcgt gctggggatt ctggtttcgc tgctggcatt
      841 gccatttggt tttctcggcg ggccaaccgg agtgtatgtc agcgtcgctt gttgggcaac
      901 gggcctgggc gcgcaggacg caacgttacg ctcgggcatc tcgcaagtcg tatcgatgaa
      961 caagcgtggc agtgcgttcg gcgccttcaa cgcagcttac ggcgtgttgt ggtttctggg
     1021 aagcgtgacg atgggagtgc tctacgatta ttcgcttttt gccctggtgg tttttggaat
     1081 cgctgcgcaa ctgatcgccg cgatcctgtt catctcgctc cgccgaccat tggcggttgc
     1141 cgcccggcgc tgaaagcttc taagagaatc taaaaactaa cccgcactcc aagttgcgca
     1201 gcgaagggaa tcccaacggt cgttcctggt ccaaagaaat ccccgagcgc tcccgctggc
     1261 actcttaaat ctcgcagact gcgaatcggt ctcttgagag tgcaagccgt attcagacaa
     1321 atgtgcatcg cattgtccag ctcacctggc ggcactggta atgccgaaag atcggggatg
     1381 aagttgtttc cggggttagt tcgattcaga agattgaaaa actccacaaa gggcttaatg
     1441 gcggtgcgct ctccccaatg gaaatcgcgg ctcacgcgca agtcgatctg gtaatacggg
     1501 gtgccacgaa actgatcaag agatgtctgc acaccgttga cgaccgcgcg atcgttcgag
     1561 tcgagaccat catcatttag atcgaccgga gtcgcgaggg tatatggacg cgcactctcg
     1621 aattgcgaaa gagtaatcag ctcaaccttg cccggtaaac gcaaagtccc cgccagcaca
     1681 aaccgatgcc gcacgtcttc gccagacgga ccgtagtcgc ccgggccgaa cgcgtggcgc
     1741 acatcgctga cgccgttaac gtaatcagcc agttcgccaa ctgttgcgcc ccatgtcttc
     1801 gcgcttgaca gtgtgtagtg cgcggacagt tcgaagcgct ttgagaaact gtgctgcgca
     1861 agaaacgcaa cgccgtcata gcgcgatcga ttgtcggtgc gaaagagcga gatgctcggc
     1921 gcgctggccg gcagagtaaa gtcgctgacg tattcatagc gacggtattg atgcacgccc
     1981 tgttgatgtt cgtaatgaat gttcaagcgc caggtcggac tcagcacgcg ctcaacgcca
     2041 aagctaaact gcaatgcgta aggcgtgtga tagtttggat cgattaccgc gccttgctcg
     2101 tcaggcgcca acaagccgct gaaaggttcg ttgaccgcgc gaaaagcatc gacccatccg
     2161 ttttgattta gatcgttgta atacaaaccc acgccgccgc ggatgacagt ctttgtcgaa
     2221 cgaccggctg aatatgcaaa gccgagccgc ggcgcaaacg ctcggcgata gtcgtgcgga
     2281 atccccggcg agagtccgat atggagagca tttaatgtga tgacggccgg gttctgatcc
     2341 tgattgcgtc ccgaggctcg gaacaatccg aaggtggtgt cgtaacgcag ccctagattc
     2401 aaagtaaagc tgggacgaat acgccacgaa tcctgaacgt agagcccaag ccttttcacg
     2461 ttctgcgaga acgtgccatt gctcgcggga ataaactggc tgccggcggc gaaatccgcg
     2521 gtgaagtcgg cggggttggc aacatagaac gtcggctccc cgggaaattc tacaagggtc
     2581 tcggcatcat cagccaacct gccgctgagc actggttcgc aaatgaagtt cacaccgaac
     2641 ttgaccgcat gcttcccgcc tgagcgcgcg acatcgtaac ggaattgata cttgcgctga
     2701 tcgcgtcgga tcggaaaagc agtgatgccg gtaacgaatt gattgtcgcc gaaggtttca
     2761 aatcccgacg tagtgatcgc cgtcgagcta aacggaaagg ccaacgccaa accgatgtgc
     2821 gagtttctgt ctttggtgtg atgaaagtcg ctggcctgaa aagttagagt gcccagccaa
     2881 attgagttga actgaaactg attgttgaca agaaagctgt aatagttcga acgagtgaat
     2941 gcgccggtcg atggtagagt tgattgttga atcaaatcgt tatgcgtgtg atttcggtcc
     3001 aacgaaccgc ggaagaacca ctgcgagcgc gccgactgga accaatctac tcgggtggag
     3061 aagagcacgt cgcgaaacgg gaccggcacc gaagtcggca cgtcaatcga tctaacgccg
     3121 gggatcagtc ccatcgacgc caaccgcgcc aaagcgcgaa attcactaag acttagtgcg
     3181 ctgtatgcta tgctcgcgtt ttcgtgaacg tattcgagtg acgaaaaaaa ccaaagctta
     3241 ccggtcttga gcgggcctcc gaatgcggcg attccattgt gacgcgagaa aggctgtttt
     3301 ggattcggct caggattgtc caacgtgttc cgggcgttga aggcgcgcgc gcgcaggtaa
     3361 tagccaaagt ctccgtgcca ttggtcagtg ccgcgccgcg tgctgatgat caccgaaccg
     3421 ccgttcgtgc gcgaagtatc agcatcgaac tgcgacgtgc gcacgacaaa ttcctgcatt
     3481 gcgtcaggcg aataattctg gagaaaacct ccgatgtaat cgtcgttgtt gtcgccaccg
     3541 tccactgaga gatcgagatt gaggccggag ctgccgccaa acgcgaccgc cgtgatgcga
     3601 gccttggttg gatcggaagg ctcgaccggt tgagtcatcg gcgccaggta agcgatgttc
     3661 gcaaaactcc ggtgc
//
LOCUS       DASZZE010000372         2147 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_154433, whole genome shotgun sequence.
ACCESSION   DASZZE010000372 DASZZE010000000
VERSION     DASZZE010000372.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2147
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154433"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..984
                     /locus_tag="VHD88_07160"
     CDS             <1..984
                     /locus_tag="VHD88_07160"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HVS21609.1"
                     /translation="EIGWIYNDQSQYAQAIEPLTEAARFKSDYAEAHEELGYAYYKLG
                     RSENAIGAYQAAVREKPDYGLAYLGLGDVYYYKTKQYREALEAYREGVRLKPDNATAF
                     YNLSFCYNELNQYANAVGAAKQAIALKANYPEAYNELGYANEKLGAQQQKGSAQAQRL
                     FNEAIADYREAVRLKPGYGLAYTGLGDVYYAQLSQCQQAVPPYEQSVRISPNNARVRY
                     NLGWCYNDLNRFAEAAESLGEAVRLKPEDAGAHRELGYAYLKLARLPAAVEALRTAIR
                     LNGNDANAHYYLGLVFVEQRNRNGALEQYRILQRLDPEKAKQLLERAQNLR"
     gene            1081..2028
                     /locus_tag="VHD88_07165"
     CDS             1081..2028
                     /locus_tag="VHD88_07165"
                     /inference="COORDINATES: protein motif:HMM:NF013046.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histone deacetylase"
                     /protein_id="HVS21610.1"
                     /translation="MPTAIVHHPVFEKHDTGAGHPEQPARYRVVIDALHGDAELWSNV
                     VEIEAAEARRGDIQAAHTPQHFKHVERAVNEGVGYLDSDTMVSVHSLEAALRGAGAAC
                     QAIDAMMEGAASNAFVPVRPPGHHATPDRAMGFCIFNNVAVAARYSQSRHKEIERVAI
                     IDWDVHHGNGTQGIFYEDPSIFYFSMHQYPWYPGTGARGETGHGRGRGYTLNVPLKAL
                     TPNSEQRRAFDSAIEEIAAKFTPDLVMISAGFDAHKGDPLGQLLLSDEDFVQMTRVVK
                     QWAAETCAGRVISCMEGGYDLETLGETVRAHVRELQSGS"
BASE COUNT          493 a          581 c          642 g          431 t
ORIGIN      
        1 gagattggtt ggatctataa cgatcagagc caatatgcgc aggcaatcga accgctgacc
       61 gaggcggcgc ggttcaagtc agattatgcc gaggcgcatg aggagcttgg ctacgcctat
      121 tacaaacttg gccgatcaga gaacgcgatc ggcgcatacc aggcggctgt tcgcgaaaaa
      181 cccgactatg gcctcgctta ccttggcttg ggagacgttt actattacaa aaccaaacag
      241 tatcgcgagg cgttggaggc ttatcgtgaa ggcgtgcggc tgaagccgga taacgcgact
      301 gctttttaca atctgtcttt ttgttataac gagctgaatc agtacgcgaa cgcggtcggc
      361 gccgcgaagc aggcgatcgc gctgaaggct aattatcccg aagcttacaa cgaactggga
      421 tatgcaaatg aaaagcttgg cgcccagcaa caaaagggat cagcgcaagc acagcggcta
      481 ttcaacgaag cgattgcgga ttatcgcgag gcggtgagac tgaaaccggg ctacgggctt
      541 gcttacaccg gattgggtga tgtttactac gcccagctca gccagtgtca gcaggcggtt
      601 ccgccttacg agcagtcggt tcgtatttct ccgaacaatg cgcgcgtccg ctacaacctg
      661 ggttggtgct acaacgatct gaatcgcttt gccgaagctg cggaaagtct gggcgaagca
      721 gtgcggctga agcctgaaga tgccggcgcg catagagagc ttggctatgc ctatttgaag
      781 ttggcgcgct tgccggcggc cgtcgaagcg ctgcgaactg cgattcgact caacggcaac
      841 gacgcgaacg cgcactatta tctgggtctg gtcttcgtcg agcagcgcaa tcgtaatgga
      901 gcgttggagc agtaccgaat tctgcaacgg ctcgatccgg aaaaggcgaa gcaactcctc
      961 gaacgtgctc agaacctgcg ctaagccagt ctgaattctt gaatctgaaa tttgaaatca
     1021 gaaatcagaa cgtgaacggg gctgggcgcg gccccgttca aactttgtag cttcgatcac
     1081 atgcccacag caatagttca tcatccggtt tttgaaaagc acgacacggg cgccggccac
     1141 cctgagcagc ctgcgcgtta tcgcgtcgtc attgatgctt tacatggtga cgccgagctg
     1201 tggtcgaacg tggtcgagat cgaagccgcc gaagcacgtc gcggcgacat tcaggcagcg
     1261 catacgcctc agcatttcaa gcacgtcgag cgagcggtta acgaaggcgt cggttatctg
     1321 gatagcgaca cgatggtttc agttcactcg ctcgaagcgg cactgcgcgg cgcgggcgcg
     1381 gcgtgccagg ccattgacgc catgatggaa ggcgcggcga gcaacgcgtt cgtgcccgtg
     1441 cgacctccgg gccatcacgc gactcctgat cgcgcgatgg gattctgcat cttcaacaat
     1501 gtcgctgtcg ccgcgcgata ttctcagtcg cgccacaaag agatcgagcg agtcgcgatc
     1561 attgattggg acgtgcatca tggcaacggc acgcaaggca tcttctacga ggacccttcg
     1621 atcttttatt tttcgatgca tcagtatccg tggtatccag gcaccggcgc ccgcggcgaa
     1681 accgggcacg gacgtggccg cggctatacg ctcaacgttc cgttgaaagc gctgacgcca
     1741 aactcagaac agcgccgcgc tttcgattcg gccatcgaag aaatcgccgc gaagttcacg
     1801 ccggatttag tgatgatctc ggccggattc gacgcgcaca aaggcgatcc gctgggtcag
     1861 ttgctgctca gcgacgaaga ctttgtgcaa atgacgcgag tcgtgaagca gtgggcggcg
     1921 gaaacttgcg ccggccgcgt catctcgtgt atggaaggcg gatacgacct ggaaactctg
     1981 ggcgaaaccg tgcgcgcgca cgtgcgagag ttgcaaagcg gaagctgatg cttcgcctgc
     2041 atcaaactgc tctgtacagc caagcgggcg tgcggtaaac tttgcgcaca agcttataga
     2101 agcaagactt gaagacgatc cttctcggga gatagcgatg ccagacc
//
LOCUS       DASZZE010000373         1693 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_43416, whole genome shotgun sequence.
ACCESSION   DASZZE010000373 DASZZE010000000
VERSION     DASZZE010000373.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1693)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1693)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1693
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43416"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            17..>1693
                     /locus_tag="VHD88_07170"
     CDS             17..>1693
                     /locus_tag="VHD88_07170"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016811 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear amides
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HVS21611.1"
                     /translation="MPPEFKLLQYKPRPWTPTDSLIIVKNFFEALSSTWRLDLLSESL
                     TDLPAEKKAWLLPETSPLDVLVVGKDTKKKSALTTPFKDSRTEVEKAELLQALAQDAE
                     TEERSLTRMGLFSENLAASNNWVVSGKHTASGKPLLANDPHLAASAPSIWYMVNLSAP
                     GVRVAGVTAAGLPGVIIGHNEHIAWGFTNVGPDVQDLYDEKFDSNDPRRYQTPTGWQQ
                     VEIRHEEIKVRKGSTDSATDTVALDVTVTRHGPIILEKSGKRYALRWTALDPKLNNSD
                     GVYSLDHARNWNEFTKALNGYTPPMQNMVYADVDGHIGYYAAGVVPIRKSGDGSLPYD
                     GSTDAGEWISYIPFDKLPHLYDPPSGIVVTANQRIVGSDYPYFLTHSWAPPYRARRIF
                     DLLNQKQKLTADDFRAIQGDVYAIAGVTFARSAAKILKPQLSSPADDKLKETIAAFEA
                     WDGQISVDSRVAPVLAEMRIAFRTRTLNAAIGEASAKSFGWANFDTTLDRLITDQPAD
                     WLPKEFKSYGDLLKACYGDARQALTKRFGADETNWTRGNRVKSSFPHPLAN"
BASE COUNT          391 a          480 c          469 g          353 t
ORIGIN      
        1 gcttgatgac aaatcgatgc cgccggaatt taagctgctt caatacaagc cacgaccgtg
       61 gacgcccacc gactctctga ttatcgtcaa aaactttttc gaagcgctca gctcgacatg
      121 gcggttggat ctcttaagcg agtcacttac cgatctgccc gctgagaaga aagcctggct
      181 attacccgaa acctcgccat tggatgtgct cgtggtcggg aaggacacga agaagaagtc
      241 cgcgctgaca actccgttca aggacagccg cactgaggtt gagaaggccg agttattgca
      301 ggctctcgca caagatgcgg aaaccgaaga gcgttcgctc acgcgcatgg gccttttctc
      361 tgagaatctc gccgccagca acaactgggt cgtcagcggc aaacacactg cgtcgggcaa
      421 gcctctgctt gcgaatgatc ctcatctcgc cgccagcgcg ccgtcgattt ggtacatggt
      481 gaatctctcc gcgccgggag ttcgcgtcgc gggcgtgacc gctgccggtt tgcccggcgt
      541 catcatcggc cacaacgaac acatcgcgtg gggcttcacg aacgttggac cggatgttca
      601 ggatctttac gacgaaaaat tcgactcgaa cgatccgcgt cgctatcaaa ctcccactgg
      661 ttggcagcaa gtcgagattc gtcatgaaga gattaaagtg cgaaagggct ctaccgattc
      721 agcgacggac acagtcgcac tcgacgtcac cgtgacacga catggcccga tcattcttga
      781 gaaaagtggc aagcgttacg ctctgcgctg gactgcgctc gatcccaaac tgaacaactc
      841 cgatggggtc tattcgctag accacgcgcg caattggaac gagttcacca aagcgctgaa
      901 tggctacact ccgccgatgc agaatatggt ctatgcggat gttgatggtc acatcggcta
      961 ttacgcggcg ggcgtagtgc cgattagaaa gtccggcgat ggcagcttgc cttacgacgg
     1021 atcgaccgat gcgggcgaat ggatcagcta cattcctttt gacaagctgc cgcacctcta
     1081 tgatccgcca tcaggcattg tcgtcaccgc gaaccaaaga attgttggca gcgactatcc
     1141 ttactttctg acgcactctt gggccccgcc gtatcgcgcg cggcgcattt ttgatttgct
     1201 gaaccaaaaa cagaagctaa ctgctgacga ctttcgcgcg attcagggcg atgtttatgc
     1261 gatcgccggc gtgacgtttg ctcgaagcgc tgcgaagatc ctgaaaccgc aattgtcttc
     1321 accggccgat gacaagctca aagaaacgat cgccgcgttc gaagcgtggg acggtcagat
     1381 cagcgtcgat tctcgcgttg cacctgtctt ggcagagatg cgcatcgcgt tccgcactcg
     1441 cacactcaac gccgccattg gggaagcgag cgcgaagagt tttggctggg cgaactttga
     1501 tacgactctc gatcgactga tcaccgatca acctgctgac tggctgccga aagaattcaa
     1561 gagttacgga gatttgctga aggcttgtta cggagacgcg cgccaggcgc tcacgaagag
     1621 attcggcgcg gacgaaacca actggacgcg gggcaatcgg gtaaagtcga gcttccctca
     1681 tccgctggca aac
//
LOCUS       DASZZE010000374         1832 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_79183, whole genome shotgun sequence.
ACCESSION   DASZZE010000374 DASZZE010000000
VERSION     DASZZE010000374.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1832)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1832)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1832
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79183"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            317..>1832
                     /gene="thrS"
                     /locus_tag="VHD88_07175"
     CDS             317..>1832
                     /gene="thrS"
                     /locus_tag="VHD88_07175"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR00418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004829 - threonine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006435 - threonyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HVS21612.1"
                     /translation="MSEIRVNINDGPAAQIGAPVTVGDALKKLDRDLAKQALAARVNG
                     REVDLAYLIGAQENGDAIKIEPVLPQTLAGLDVLRHSTAHLLAAAVLDLFPGTKLGIG
                     PALLEDARYGFFYDVIAPRALTEADLPVIEKKMRDIAKRNMPYRRDEISKAEAMRIFA
                     EREEPLKCELIDEKAGELVSVYYIDGSSFIDFCLGPHVPNTNRLRAFKLLSLAGAYWK
                     GDAERPQMQRIYGTAYFTPEELDAWLKQREEAEKRDHRRLGRELDLFSIQEEYGQGLV
                     FWHPKGGIVRQQMDDYLREELVKRNYSFVYTPHIAKRELWQLSGHEQNYGDSMFAPTK
                     LEETEFRLKPMNCPMHIGIYKSQQRSYRDLPQRYAEMGTVYRAELSGTLHGLMRVRGF
                     TVDDAHLFCTPEQIRREIDDCVDFAYQVLKTFGFEKIKFELSVKGNDTSKLYLGEEED
                     WAKAESALAAEMDARGIDYQRMEGEAAFYGPKIDFKIEDAIGRLWQLGTVQWDFN"
BASE COUNT          419 a          454 c          557 g          402 t
ORIGIN      
        1 atggtagggc gccggagccg atgcatgatg cggctttgtc gtctgatgtg cggaaagccg
       61 tgctggccca gtaagggccg aatatttata gctcttaacg ttccaagttt atcaagctcc
      121 tttaggagtg gaatgtgaga gcgatttctg gactgattga aagaacgcca gtgaagatgt
      181 cgctcctaaa ggagcttggt ttgatctagc acgttcggtg ctataaatat ctcgctcctg
      241 acggagcgaa accattgtaa gtctttccgc gcatcgcgcg gcaaaggagc aacggaatcc
      301 aaagttcggg tcatcgatga gcgagattag agtaaacatt aacgacggtc cggcggcgca
      361 aatcggcgct ccggtcacgg ttggtgatgc tttgaaaaag ctggaccgcg acttggcgaa
      421 gcaagcgctg gctgcgcgcg tcaacggccg cgaagtcgat ctggcctact tgatcggtgc
      481 gcaggagaac ggcgatgcga tcaagatcga acccgtactg ccgcagactc tggcagggct
      541 cgacgtgctg cgtcattcaa ccgcgcacct gctggccgcg gccgtgctcg atcttttccc
      601 gggaacgaag ctgggtatcg gcccggcttt attggaagat gcgcgctatg gctttttcta
      661 tgacgtgatt gcgcccagag ctttgactga agccgatctt ccggtaatcg agaagaagat
      721 gcgcgacatt gccaagcgca acatgcctta tcgacgtgac gagatttcaa aggccgaggc
      781 gatgcgcatc ttcgccgaac gtgaagagcc tttgaagtgc gaattgatcg acgaaaaagc
      841 cggcgagtta gtcagtgtct attacatcga cggttcgtcg ttcatagatt tttgtctggg
      901 gccgcacgtg ccaaacacga accgtctgcg cgcgttcaag cttttgtcgc tggctggtgc
      961 ttactggaaa ggcgacgctg agcgaccgca gatgcaacgc atctacggca ccgcgtactt
     1021 cacgccggaa gagctcgacg cgtggctcaa gcaacgcgaa gaagctgaga agcgcgatca
     1081 tcggcgcctg ggtcgcgaac tcgatctgtt ctcgattcag gaagagtacg gacagggtct
     1141 cgtcttctgg catccgaagg gcggcattgt gcgccagcag atggacgatt acttgcgcga
     1201 agaactggtc aagcgcaact acagttttgt ttacacgccg cacatcgcca agcgcgagct
     1261 ttggcagttg agcggccacg aacagaacta tggcgattcg atgtttgcgc cgaccaagct
     1321 cgaagaaacc gagttccgtc tgaagccgat gaattgtccg atgcacatcg gcatatataa
     1381 atcgcagcaa cgatcgtatc gcgatttgcc gcagcgctat gctgagatgg gcacggtcta
     1441 tcgcgcggaa ctatcgggca cgttgcacgg cttgatgcgc gtgcgcggtt tcacggttga
     1501 cgatgctcat ttgttctgca cgcccgagca gattcgccga gagattgatg actgtgtaga
     1561 cttcgcttac caggttctga agacgttcgg atttgagaag attaagttcg agctatcggt
     1621 caaagggaac gacaccagca agctttatct cggcgaagaa gaagattggg caaaggccga
     1681 gagcgcgttg gccgcggaga tggatgcgcg cggcatcgat taccagcgca tggaaggcga
     1741 agccgcgttt tacgggccta aaattgattt caagatcgaa gatgcgattg ggcgtttgtg
     1801 gcagctcggc acggtgcagt gggatttcaa tc
//
LOCUS       DASZZE010000375         8026 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_253930, whole genome shotgun sequence.
ACCESSION   DASZZE010000375 DASZZE010000000
VERSION     DASZZE010000375.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8026)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8026)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8026
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_253930"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..354
                     /gene="queD"
                     /locus_tag="VHD88_07180"
     CDS             <1..354
                     /gene="queD"
                     /locus_tag="VHD88_07180"
                     /EC_number="4.1.2.50"
                     /inference="COORDINATES: protein motif:HMM:NF013411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase QueD"
                     /protein_id="HVS21613.1"
                     /translation="RNFSSAHQLRGYKGKCENLHGHNYKIEIYARGRELNEIGLLVDF
                     VELKEAADDLVTYLDHKNLNELEPFVEEQNPSAENLARFILERLAARLDDDRVRIYKV
                     RCFETPTSVATYQVE"
     gene            complement(419..817)
                     /locus_tag="VHD88_07185"
     CDS             complement(419..817)
                     /locus_tag="VHD88_07185"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HVS21614.1"
                     /translation="MPANQEDRRQSPRIDATLEARLEFSVLLREPEAAESGVQHLRAC
                     AGHTLNISAAGLAVMLHAQNIDEQYLLGREGSMAIELDLPNGLSIEIQATPVRYEKLD
                     EGYLLGARISQISDRHRELFDEYLRELAET"
     gene            complement(942..1241)
                     /locus_tag="VHD88_07190"
     CDS             complement(942..1241)
                     /locus_tag="VHD88_07190"
                     /inference="COORDINATES: protein motif:HMM:NF014950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21615.1"
                     /translation="MKPTTAKDTEPSALEDLGRATLQIVHDLKNRLNGIKLYATFLRK
                     RLEREDRSPEERETLGKVITGLDRAVYGMGRATEPDTRGDRKLCDRANPTARRRK"
     gene            1443..1820
                     /locus_tag="VHD88_07195"
     CDS             1443..1820
                     /locus_tag="VHD88_07195"
                     /inference="COORDINATES: protein motif:HMM:NF039486.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HVS21616.1"
                     /translation="MKQKENLVLVVEDFEDSRFMMRRLLEMSGYRVVEASDGEQAVEL
                     ALQERPALVLMDLSLPKLDGLSATRKIRQRRGFDRIPIVAVSAHDSPEARNEALAAGC
                     NDYVTKPIDFDQLKSVLDRFLAK"
     gene            complement(2006..2896)
                     /locus_tag="VHD88_07200"
     CDS             complement(2006..2896)
                     /locus_tag="VHD88_07200"
                     /inference="COORDINATES: protein motif:HMM:NF025034.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartyl protease family protein"
                     /protein_id="HVS21617.1"
                     /translation="MKIIAIRMLLINALLCVSATAVPAVTDSDSEIPFTFEKGHVIVS
                     AKINGDTPVEVVLSTGAEYSLINALLLDKYKLKGAYTGEGIITGGDLDRVVVFVPVSD
                     IHVGDVKLTSLNMRYGQAPTEITQRLGREIFAVLGADFFKGRVVQFDFRRKVIRFLAH
                     SLDSTPQNKDASRFATLSIRPSDESIRPIVENVTFNGMKIKTLFDTGALTVVSLTPSA
                     AKQIGLTPPPDKSPPRADKVSLKFGEIGFTDLPVTLYAKGSVFDRTSSGYGAVVGIAL
                     LQNFILTFDFHRGLVTLEHV"
     gene            3009..4925
                     /gene="selB"
                     /locus_tag="VHD88_07205"
     CDS             3009..4925
                     /gene="selB"
                     /locus_tag="VHD88_07205"
                     /inference="COORDINATES: protein motif:HMM:TIGR00475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0001514 - selenocysteine incorporation
                     [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HVS21618.1"
                     /translation="MKSIIIGTAGHIDHGKTALVRALTGVDADRLPEEKRRGITIDIG
                     FADLDLGDVRIGFVDVPGHERFVKNMLAGAHGIDVVALVIAADESVMPQTREHFDICR
                     LLDVRKGLVVLTKRDLVDEELLSLVRAEAKELVAGSFLEDAPIVSVSSRTGEGIEELK
                     TALREIGLQVPSRSSDFITRLPIDRAFTMRGFGAVVTGTLIAGEISEGDELELLPAGA
                     RVRVRGLQVHGASVSRAFAGQRTAVNLSGIETAAVERGMVLAPVGRLRPTQIIDAQIQ
                     MLRDAPRALRSRQRVRVHLAAAEVLARVRVLEENSEIKPGAVGFAQLRFELPVVGVLG
                     DRFIIRSYSPSRTIGGGMITDALASKHRTRDVAAARDWLGGLMKGDRAQQLALFAQQA
                     GHCGLDRADLVARTGWRDEVIEQEASNAKQTGTIVDVEGVLLSAEALDGLKQRVMKDV
                     AAHHESEPLSRGLAKETLREHHFAHARPEVFRAVIAQLEKEGALVSEKEVVRAREHSR
                     ELSGADAQLRDRLETIYRRAALAAPSISEALASAGVSAATQQHARKVLHTLFDSGLLV
                     RVHGEMFFHRDALEDLKKKLRAYADKNPKDRAIDVSAFKELAGISRKYAIPLLEYLDR
                     QRVTRREGDRRIIL"
     gene            5015..5368
                     /locus_tag="VHD88_07210"
     CDS             5015..5368
                     /locus_tag="VHD88_07210"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HVS21619.1"
                     /translation="MKGSTHMRFIVLTSLAIIVAVGVLVACNSKEVVISQLPSAPAQS
                     PAPKQNPADSARRITAEELHKLWEKGDVLIIDTRGEPDYKAGHIPKAISIPANEMAAK
                     VDELPRDKMIVAYCT"
     gene            complement(5570..6538)
                     /locus_tag="VHD88_07215"
     CDS             complement(5570..6538)
                     /locus_tag="VHD88_07215"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HVS21620.1"
                     /translation="MASFRNILFPTDFTPHARSALKYAAAFARASRGRVVLLSVQTAK
                     VPANLMTLPARVLEDQETKWLLQLRNQVKDLLTDPLFDGLVVEPVIVEGEPAHEIANA
                     VRDYDIDLVTVVTHGRRGLAHALWGSTAEEIIAEAPCPVLTIRPPQHDFVEHRGHDAK
                     INLNRILLATNFRPSSIAATNLARELAAGTKAELHAVYVIGDYFEQISVMFPEGARAA
                     LSRMRAEVKGRMQSFESEGGGRVTTHIAEGRPYAEIVRLAAETDADLIVIGTSVHASL
                     FGGAPALGSEIERVVRNAPCSVLCVPSGRVVTPLPAFARSQPVPQT"
     gene            complement(6628..7455)
                     /locus_tag="VHD88_07220"
     CDS             complement(6628..7455)
                     /locus_tag="VHD88_07220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21621.1"
                     /translation="MDTSFVNLWALLRHLSQRAFVGRVHVEMDDYSADVFLTGSNTPL
                     VHEVDRAAGTDVLEEAAMHRLVLRARESPGSISVFEGADEAVAVRSVEPAAKTGTVKS
                     TAAKDELSVTPPSAAPLIDESQSSGRDSSSEAEVATEPEETVEWHDVVKVSGELIGGV
                     ERALSRANSDFTALFRAARLELADDYTFLDPTSGSLEYSNSVATLREELPVNAYVAGL
                     SEALRRVVDKVATGDRARRVRERVALDLSLVARKRGEVLKRSGFLAQLDRIAGTKVI"
     gene            7701..>8026
                     /locus_tag="VHD88_07225"
     CDS             7701..>8026
                     /locus_tag="VHD88_07225"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HVS21622.1"
                     /translation="MLRGIFRTKNLDDILASAHEKGHTLKRTLGPINVTLLGIGAIIG
                     AGIFATIGTAAAGDASRPGAGPSLMVSFGITAIVCAFTALCYAEMAAMVPISGSAYTY
                     SYATLG"
BASE COUNT         1743 a         2203 c         2309 g         1771 t
ORIGIN      
        1 cgcaactttt ccagcgcgca tcaactgcgc ggctacaagg ggaagtgcga gaacctgcac
       61 ggccacaact acaagattga aatctatgcg cgcggacgtg aattgaatga gatcggattg
      121 ctggtggatt ttgtggagct aaaggaagcc gccgatgatc tggtgactta tctcgaccac
      181 aaaaacctga acgagttgga accttttgtc gaagaacaga atccttcggc tgagaatctc
      241 gctcgattta ttcttgaacg tttggctgcc cgacttgatg acgatcgcgt gcggatttac
      301 aaggttcgat gttttgagac gccgactagc gtggcgactt accaggttga gtaaactgaa
      361 cccttcctta cggtcgggct tctgacacga acctatccgc cgcacgacac gaactctact
      421 aggtctcggc gagttcgcgc agatattcgt cgaacaattc ccgatgacga tcactgatct
      481 ggctgatgcg cgcgccgagc aagtatcctt catccagctt ttcatagcgc accggcgtgg
      541 cttgaatttc gatcgacaag ccgttaggca aatccaactc gatcgccatt gagccttcac
      601 ggcccagcaa gtattgctcg tcaatgttct gggcgtgaag catgaccgcg agacctgcgg
      661 cgctgatatt cagcgtgtga ccagcgcacg cgcgcaagtg ctgcactccg ctctcggcag
      721 cttcgggttc gcgcaagagc acgctgaatt ccaaacgagc ttcaagagtc gcatcgattc
      781 gcggagattg gcggcggtct tcctgattag cgggcactgt cggggtccct tttgttcctt
      841 gttttagttc tggctgatcg tctcccggcc gatcttgtac ttcttgatct tactgtacaa
      901 cctcggccga taaatgccta gaataatttg cggccttctg cttatttccg ccggcgcgct
      961 gtagggttcg ctcgatcaca aagttttcga tctcctcgag tgtcaggttc ggtggcgcgt
     1021 cccatgccat agacggcgcg gtcgagtccc gtgattacct tgccgagcgt ttcgcgttcc
     1081 tccggcgatc gatcttcgcg ttccagccgt ttgcgcagga aggtagcgta cagtttgatt
     1141 ccattcagcc ggttcttgag atcgtgaacg atttgcagag tcgcccggcc cagatcttcc
     1201 agagcgctcg gttcggtgtc tttggccgta gtaggtttca ttgttcgaac aacccggagg
     1261 gatgctaagg gagaagtggt acgaattaaa ctcaatttag attgtctttt tgtgtcgcat
     1321 ttcgatgcga tgatgatagc agaaagtcgt gatcgtatgt taccgatgca tacgatggga
     1381 ttggttccgc ttttgcaggg atttgacctc catgaacaat tggcccgaag atgggatcgt
     1441 tgatgaagca gaaggaaaat ctcgttctgg ttgtcgaaga ttttgaagac agccggttca
     1501 tgatgcgcag gttgctcgag atgtcgggct atcgcgtcgt cgaagcgagt gatggcgagc
     1561 aggccgtcga gctggcgctg caagaacgac ccgcgttggt cttaatggat ttgagtttgc
     1621 caaagctcga tgggctatct gcgaccagaa aaatccggca gcgcagaggc tttgacagga
     1681 ttcctatcgt cgccgtttcc gcgcatgact ctccagaggc gcgcaacgaa gccctggctg
     1741 caggttgcaa cgattacgtg acgaagccga tcgatttcga tcaactcaag tctgtgcttg
     1801 atcgttttct tgcaaagtaa cgccggtaat ggttgcgcgg tgcgccagcc ggagattaat
     1861 aggaaggcaa agacccaaac gacttgtcag cgtaaccgta gcacagacga tctccttatg
     1921 ttcacacttg gtaacttcct aatgaatgcc gttcaacgac gtgttcggcg ttggcgctgg
     1981 caagcggcgg atcgttggct tgatttcaga catgttcaag tgtcacaagt ccgcggtgga
     2041 agtcaaaggt tagaatgaag ttttgtaaaa gtgcaatacc gacgacagca ccgtatcctg
     2101 atgaggtgcg gtcaaagaca ctgcctttgg cgtaaagcgt aaccggcaag tcggtaaatc
     2161 ctatctcgcc aaatttcaga gataccttgt ctgcccgagg cgggctcttg tcgggcggtg
     2221 gtgttagtcc gatctgcttc gccgcagatg gggtcagtga aactactgtg agcgcgcccg
     2281 tatcgaagag ggttttaatc ttcattccgt taaaagttac gttctcaact ataggcctga
     2341 tggactcatc gctcggtcgg atcgacaggg tggcgaacct gctcgcatct ttgttctgtg
     2401 gcgtactgtc aagcgaatga gctaggaacc ggatcacttt tctcctgaaa tcaaattgca
     2461 ctacacgacc cttgaagaaa tccgcgccaa gaacggcgaa gatttcccgt ccgagcctct
     2521 gggtgatctc agtgggggcc tgcccgtagc gcatgttcaa gctagtcaat ttcacatcgc
     2581 cgacatggat atctgatacg gggacaaaga cgaccacgcg atcgagatcg ccgccggtga
     2641 tgatgccttc gccggtgtag gcgcctttca gtttgtattt atccagcaag agagcattga
     2701 ttagagagta ttccgcgccg gtcgaaagga ccacttcgac aggggtgtcg ccattgatct
     2761 tggccgacac gataacgtgc cccttttcaa acgtgaatgg aatttcactg tcgctatcag
     2821 taactgcagg cacggcggta gccgatacgc aaaggagcgc atttatcaga agcattcgta
     2881 tggcaattat cttcatgtga atttctccgg ttgagcctta cgagaaacgc cgaactacgt
     2941 atcagaccac acggtgtggc ctaagttctc tatgccgcgt attatacccc gcgtttcagc
     3001 aattctagat gaaatcaatc atcatcggca cggcgggtca catcgatcac gggaagacgg
     3061 cattggtgcg cgcgttgacg ggtgttgacg ccgatcgtct gcccgaagaa aagcggcgcg
     3121 ggatcacgat tgacattgga tttgccgatc tcgatttagg tgacgtgcgc ataggctttg
     3181 tcgacgtgcc cggtcacgag cgcttcgtca agaacatgct ggccggcgcg catggtatcg
     3241 acgtagtcgc gttggtcatc gccgcggacg aaagcgtgat gccgcaaacg cgcgagcatt
     3301 tcgacatctg ccgcttgctc gatgtgcgca aaggtttggt cgttctcact aaaagagatt
     3361 tggttgacga agaattgctt tcgttagttc gggccgaagc gaaggagctg gttgctggat
     3421 cgtttctgga agatgcgccg attgtttccg ttagttcgcg cacgggcgag ggaattgagg
     3481 agctgaaaac ggcgctgcgc gagattggct tgcaagttcc ttcgcgctca tccgacttca
     3541 tcactcgctt gccgattgat cgagcgttta cgatgcgcgg atttggcgca gtcgtcacgg
     3601 gaacgctgat cgccggcgag atctctgaag gtgacgaatt ggaattgctg ccggccggag
     3661 cgcgagtgcg cgtgcgtgga ttgcaagtac acggcgcatc agtgagccgc gcattcgcgg
     3721 gtcaacgcac ggccgtgaac ctcagcggaa ttgaaaccgc cgccgtcgaa cgcggaatgg
     3781 tgctggcgcc ggtcggccgt ctccgtccga cgcaaatcat cgacgcgcag attcaaatgc
     3841 ttcgcgatgc gccgcgcgcc ttgcgttccc gtcagagagt acgcgtgcac ctcgctgccg
     3901 ccgaagtcct tgctcgcgtt cgcgtgttgg aagaaaacag cgagataaaa cccggcgcgg
     3961 ttggttttgc gcagttgcgt tttgagctcc ccgtggtcgg cgtgctcggc gatcgattca
     4021 tcattcgttc gtactcgcca tcgcgcacga tcggcggcgg catgatcaca gacgcgcttg
     4081 cttcgaagca tcgcacacgc gatgttgcag ccgcgcgcga ttggcttggc ggtttgatga
     4141 agggtgatcg cgcgcagcaa ctcgcgttgt tcgcccaaca agcgggacat tgtggactgg
     4201 atcgcgctga ccttgtggcc cgcaccggtt ggcgcgatga agtcatcgag caggaagcat
     4261 cgaacgcgaa gcaaacggga acaatcgttg acgttgaagg cgtgctcctc agcgcggaag
     4321 ctttggacgg gctgaagcag agagttatga aagacgtggc cgcgcaccac gagtctgagc
     4381 ctttgtcacg cggtttggcg aaagagactt tgcgcgaaca tcactttgcg cacgccagac
     4441 cggaagtctt tcgcgcggtc atcgcgcagt tggagaagga aggcgcgctg gtgtcagaga
     4501 aagaggtcgt gcgcgcgcgc gaacattcac gcgagctttc tggcgctgac gcgcaattgc
     4561 gagatcgttt ggaaactatc tatcgcagag cagcgctcgc cgcgccgagc atcagcgaag
     4621 ctctcgcgag cgcgggcgtc agcgctgcaa cgcagcaaca tgcgcgcaag gtcctgcaca
     4681 ctctattcga ttcgggcttg ttggttcgtg ttcacggcga aatgtttttt catcgtgacg
     4741 cgttggaaga tttgaaaaag aaactgcgtg cgtatgcgga taaaaatccg aaggatcgcg
     4801 ccatcgacgt ttcagctttc aaagagctgg caggcatctc gcgcaagtat gcaatcccgc
     4861 tgcttgagta tctcgatcgc cagagggtta cgcggcgtga aggggatcgg agaattattc
     4921 tctgagaact tcacacaccg aacctggaac gctaaactcc cgctcgcgct ttgcaaccgc
     4981 tccgcaaatt ggtaaattaa gcttcaggta gcagatgaaa ggaagcactc acatgcggtt
     5041 tatcgtactg acttcattgg caatcatcgt cgcggttggc gtgttggtgg cgtgtaactc
     5101 gaaggaagtt gtcatctcac agcttccgag cgctcctgct cagagccccg cgccgaagca
     5161 gaaccctgct gacagcgcgc gccgcatcac ggccgaagag ttgcacaagc tttgggaaaa
     5221 aggcgacgtg ctcatcattg acacgcgcgg tgagcctgac tacaaggcgg gccacattcc
     5281 gaaagcaatc tcaattcccg ctaacgaaat ggccgcaaag gtcgatgaac tgccgcgcga
     5341 caaaatgatt gtcgcctact gcacttgacc ggccgaacac acgagcgccg gtgcggtggt
     5401 cacactaaaa gcaaaaggaa tggataacgc ggcagcgttg ctgggcggac tggcagcgtg
     5461 gaagagcgcg ggctatccgg tggaaagcag cagcgagaaa aagtgaaaag gggaaggggt
     5521 aaggggaaag aaccgcagcc tttttccgtt tacccctttt cctttcccct taagtttgcg
     5581 gaacgggctg cgatctggcg aacgcgggaa gcggcgtgac gactcggccg gaaggcacgc
     5641 acaacacgga gcaaggcgcg ttgcgtacaa cgcgttcaat ctctgaacca agtgccggtg
     5701 cgcctccaaa caatgaagcg tgcacactcg tgccgatgac gattaagtca gcgtcggttt
     5761 cggcagcgag tctgacaatc tcggcgtacg gccggccctc ggcgatatga gtcgtgacgc
     5821 ggccgccacc ttcgctctca aacgattgca ttcggccctt cacttctgcg cgcatacgcg
     5881 aaagcgccgc gcgcgcccct tcgggaaaca tcaccgagat ttgttcgaag taatcgccga
     5941 tgacatagac tgcgtggagc tcggccttcg tgcctgccgc caactcgcgc gccagattcg
     6001 tcgcggcgat cgatgacgga cgaaagttag tcgccaacag aattctattt aggttgatct
     6061 tggcgtcgtg cccgcgatgt tcgacaaagt cgtgctgcgg cggtctgatc gtcagcacag
     6121 ggcagggcgc ttccgcgatg atttcttccg cagtcgatcc ccataacgcg tgcgccagcc
     6181 cgcgccggcc gtgcgtcacg accgtgacca gatcaatgtc gtaatcgcgc accgcgttcg
     6241 caatctcgtg cgcaggctcg ccttcgacta tcacgggttc gactaccaaa ccatcgaaaa
     6301 gcggatcggt gagcaagtcc ttcacttgat ttcgcagttg cagcaaccac ttcgtttcct
     6361 gatcctccag cacgcgcgca ggcagcgtca tcaaattcgc cgggaccttc gcagtctgca
     6421 cgctaagcaa gacaacgcgc ccgcggctgg cgcgcgcgaa cgctgccgcg tacttcaacg
     6481 ccgaacgcgc gtgcggcgtg aaatccgtcg gaaaaagaat gtttcggaaa gaagccatat
     6541 tgtagctgtc agcagtcagc tctcagcttt cagtctgatt gatggcgagt ttgctgaccg
     6601 ctgaaagcta agtgctgata gctcgcatca gatcactttc gttccagcga tgcgatcgag
     6661 ttgggctaag aaacccgaac gcttcagaac ctcgccgcgc ttgcgcgcga ccagcgacag
     6721 atccagcgcc actctttcgc ggacgcgtcg agcgcgatcc ccagtggcaa ctttgtcaac
     6781 gactcgtcgc aacgcttcac tcagtccggc gacgtaggcg ttgacgggca actcctctcg
     6841 cagcgttgct accgagttcg aatactcaag acttcctgaa gtcgggtcga gaaaagtgta
     6901 gtcgtcagcc agctccagac gcgcggcgcg aaacagtgca gtgaagtcag agttagctct
     6961 actcaaagcg cgctcgacgc cgccaatcaa ttcaccgctg actttcacga catcatgcca
     7021 ctcaactgtc tcttccggct cagtcgcgac ctcagcttcg gacgatgaat cgcggccgga
     7081 gctttgtgat tcgtcaatca gaggagcggc actcggcgga gtcacggata attcatcctt
     7141 agcggccgtc gacttgacgg ttcccgtttt cgcagccggc tccacgctcc gcaccgcgac
     7201 cgcttcgtcg gcgccttcaa agacgctgat cgaaccaggc gattcgcggg cgcgtaaaac
     7261 caggcgatgc attgctgcct cttccagtac atcagtgccg gccgctcgat ccacctcgtg
     7321 caccagcggc gtgttcgatc cggtcaggaa gacatccgcg ctgtagtcat ccatctcgac
     7381 gtgcacgcgc ccgacgaacg cgcgctgcga caaatgacgc aacaacgccc acaagttgac
     7441 gaaactcgtg tccaaattct cgtaaagtac gcgcgatttt gattctgaac tcataatttg
     7501 cgatcaatcg aactcgacgc ggagtctaac aaagccgaaa ggtgaaaggc aaaatgggag
     7561 cgcacagagt ggagcgcacg catccctgcg tgcggtcctc gcgcatcctg ctcgcaggtc
     7621 gcatcgccgc ttcgcatgaa gatgcgtgcg ctcccggaaa aaacttgaaa cttgaaacct
     7681 gaaaccttaa actccgcgac atgcttcgcg gaatctttcg cacgaagaac cttgacgaca
     7741 ttttggcgtc ggcgcatgag aagggtcata cgctaaagcg cacgctgggc ccgatcaacg
     7801 taacgctgct cggcatcggc gcaattatcg gcgcgggaat ttttgcgacg ataggcacag
     7861 ccgccgccgg cgacgcctcg cgcccgggcg ctgggccatc gttgatggtg tcgtttggga
     7921 tcacggccat cgtgtgcgct ttcaccgcgc tctgttacgc cgagatggcc gcgatggtgc
     7981 cgatctccgg ctcggcttac acatattctt atgcaacgct cggaga
//
LOCUS       DASZZE010000376         3436 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_95543, whole genome shotgun sequence.
ACCESSION   DASZZE010000376 DASZZE010000000
VERSION     DASZZE010000376.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3436)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3436)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3436
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95543"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(122..742)
                     /locus_tag="VHD88_07230"
     CDS             complement(122..742)
                     /locus_tag="VHD88_07230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21623.1"
                     /translation="MKTRAALCLIVCPLILFGSAVAATTDAPEENSPITFPSPDGRFA
                     LRISEAQDKQDGDSKIDIIETASSKVMADLGPIYFSQWAKTVLVWSADSKWVAYGTGG
                     DRHRETTVYFWNGSAFEPIPLPDDLPGPEIKFHKGAGRDVKNYGGGVKPVRWLKSGEL
                     EVSNEEMMLSRVDSLTYTGTVLITIGFDAQHHASNKSVSKTKTSVE"
     gene            complement(1447..1758)
                     /locus_tag="VHD88_07235"
     CDS             complement(1447..1758)
                     /locus_tag="VHD88_07235"
                     /inference="COORDINATES: protein motif:HMM:NF024835.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HVS21624.1"
                     /translation="MPTSKAARSKNKHRGSSFETFLEKQGLREEVHAAALKRAVALKV
                     HDLMKEKRMNKSAMAARMRTSRAAIHRLLDPENTSVTLATLNRAARSLGRKVKIELVA
                     A"
     gene            2034..2855
                     /locus_tag="VHD88_07240"
     CDS             2034..2855
                     /locus_tag="VHD88_07240"
                     /inference="COORDINATES: protein motif:HMM:NF025091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate lyase/phosphoenolpyruvate mutase
                     family protein"
                     /protein_id="HVS21625.1"
                     /translation="MASVAQRRESFRALHQSGCFAIPNPWDIGGARYLQHLGFKAIAT
                     TSAGFAFSRGLPDDAVGRDQMLGHIQELVEATDLPVNADFENGYADEPRDVAESVRLC
                     VATGVAGLSIEDATDRRESRIYDVDFAVERIRAAREAIGDSGVLLVGRAEGFLVGRED
                     LNKVVERLIAYSEAGADCLYAPGFREREDIKAIVDAVAPKPVNLLIGGAIGLTMDDAA
                     ALGVRRVSVGGALACAAWGGFIRAAKELAEHGCFDEFAQATPHDELQKFFRKSGE"
     gene            complement(3107..>3436)
                     /locus_tag="VHD88_07245"
     CDS             complement(3107..>3436)
                     /locus_tag="VHD88_07245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21626.1"
                     /translation="NTMVVYAAAGSSVKVTTDGTDADGKATHSEWTGKFDGKDYPVTG
                     DPTSDGRSYKKVDDRTMDFAVKKGGKTTITGHIAVAADGKSRTVTTSGTTPKGKKFKN
                     MAVYDKT"
BASE COUNT          742 a          927 c          996 g          771 t
ORIGIN      
        1 cagcagcatg gcaatcagtg cacttaggat tctggtagcg gtggtcttca tagttgtttt
       61 gtagcgcgcc gcctacaggg aagcaacgcg aaaccattct tccgcgcaat cggcgactcc
      121 gtcactccac cgaagtcttt gtcttcgaga cgctcttatt agatgcgtga tgctgcgcat
      181 cgaacccgat cgtgatcagc accgtgccgg tgtaggtgag gctgtcaacg cgcgatagca
      241 tcatctcttc gttcgacacc tccagctctc cggatttcaa ccaccgcacc ggtttcaccc
      301 cgccgccgta attctttacg tcgcggcctg ctcccttgtg aaacttaatc tccggtcccg
      361 gcaggtcgtc cggtaaagga atcggttcga acgccgagcc attccaaaag taaacggttg
      421 tttcgcgatg gcgatcgccg cccgtgccat aggcgaccca cttcgagtcg gccgaccaga
      481 ctaaaacggt tttcgcccac tgcgagaagt agattgggcc tagatcagcc atcactttgc
      541 tcgacgcggt ctcgatgatg tcgatcttcg agtcgccgtc ttgtttgtcc tgggcctcgc
      601 tgatgcgtag cgcgaagcgt ccatccggcg acggaaatgt gatcggggaa ttttcctccg
      661 gcgcgtcggt ggtcgcggca acggcgctgc cgaagagaat gagcggacac acgatcaagc
      721 acaacgcggc gcgtgttttc ataatagaag aagtgacgag tgagcagcaa tcgtcgttgt
      781 cgatcttatc gtgtttcggc aaagactaaa gaaagtcgga aggaagaacc aataattaag
      841 aacgagaagg gcgcggatcg ctatccgttc actaattcaa agacgcggtg caaaaaagaa
      901 gtgacgagtg acccgcctac gcccggctac ggcgtggcaa gcaggtgacc agtgacgagc
      961 acggagatca gatgtcagaa ggcagatgcg gccgcgacca ccgtgcatgc gcgaacacga
     1021 acttgactgc ttaaagcaat taagtttccc acctcatcgt tagatttcat gcatcgtaag
     1081 cggcttatga tagagcgtta gtttgggctt tttcgttcgc ttcgagaaga atcgtccaag
     1141 gctgatgcgg aagtgaccag cgacgagtgg caggtgaccc gccttcgcca cctccttcgc
     1201 taaagctacg gcgagtcagg aaggctacgg acgcggcaag caagtgacga gcggagaagg
     1261 ttgatttttg atcgaatgct tcgccgtctt gcccgctacg gccggcaagc tgtgaaccgg
     1321 ccacgggtta acgatcaaaa gaacgccgga aaacgcgccg ctcgaactcg actgcttaaa
     1381 gcagtcaagt ctccaacctc atcgttagac ttcatgcatc ataagcggct tatgatgcgg
     1441 atacggctat gctgccacca attcgatctt tactttgcgc ccgagcgatc tggcggcgcg
     1501 atttaatgtt gcgagcgtga cagacgtgtt ctctggatcg agcagtcggt gaatcgcagc
     1561 ccgcgacgtt cgcatacgcg cagccattgc gctcttgttc atgcgtttct ctttcattaa
     1621 gtcatgtacc ttcagcgcga cggcgcgttt cagagcggcc gcgtgcactt cctcgcgcag
     1681 gccttgcttt tccaggaagg tttcaaaact gcttccgcga tgcttgttct tacttcttgc
     1741 tgcttttgat gtaggcattc tcctgaaccg ctgattaggc ggatttcacg gataggtcta
     1801 ggagccattc gcgcaccggc tctcgccccg tttccgtgcg aaagaaaact gcgggcaaca
     1861 gacgtggcac acggatgact gtatcatttc tgatacatct aacaagcaga atctgcgccg
     1921 ccggctagcg cggcggttga cgatcaatta ctgttcgctt cgaggggccg ccttcgccaa
     1981 gctactccga aagtcttcgc gagcaggcgg cgcgacaggg tagagtaccg atcatggcga
     2041 gcgttgccca acggcgagaa agctttcgcg cccttcatca aagcggttgt tttgccattc
     2101 caaatccgtg ggacattggc ggcgcgcgtt atcttcagca tcttggcttt aaagcgatcg
     2161 cgacaacgtc ggccgggttt gcgttctcgc gcggattgcc tgacgacgca gtcggacgcg
     2221 atcagatgct ggggcacatt caagagctcg tcgaagcgac cgatttaccg gtgaatgcag
     2281 attttgaaaa tggttatgcg gatgaaccga gggatgtcgc ggagagcgtg cgcctgtgtg
     2341 ttgcgacagg ggtcgcgggt ctttcgatcg aagatgcaac cgaccggaga gagagccgaa
     2401 tttacgatgt cgattttgcg gtcgagcgaa tccgggcggc gcgcgaagcg attggggaca
     2461 gcggcgtgtt gctcgttggg cgagcggaag gatttcttgt cggccgcgaa gatctaaaca
     2521 aggtcgtgga acggctcatc gcttattctg aagccggagc agattgtttg tacgcgcccg
     2581 gtttccgcga acgcgaggat atcaaagcca ttgtcgacgc agtcgcgccg aaaccggtga
     2641 acctgctcat cggcggagcg attggcttaa cgatggatga tgcggctgcg ctcggcgtgc
     2701 ggcgagtgag tgtgggcgga gcgctcgcgt gcgcggcgtg gggcggattt attcgcgccg
     2761 cgaaagaact ggccgaacat ggatgcttcg acgaattcgc tcaagcaacg ccgcacgatg
     2821 aattgcagaa attcttcaga aaaagtggcg agtgacccgc cttcgccacc tccttcgcta
     2881 aagctacggc gagtcaggaa ggctacggac gcggcaagca agtgacagaa agttgatggc
     2941 cgcgcgtttc cgtgacgaca aacagtcgat tcatccgtcg caaagaaatg tttgatggtc
     3001 gatcttgaag tgatatttca aaatcggccg agcagactaa taaaaccgca cagcaagttt
     3061 acaaaacggg gagtaaaccg caaagtggtg tcgaacaacg cgacctttac gtcttgtcgt
     3121 agaccgccat gttcttgaac tttttgccct tgggagtggt tccgctcgtg gtgacagtgc
     3181 ggctcttgcc atcggctgcc acagcaatgt gaccagtgat agtggtcttt ccgcccttct
     3241 taacggcgaa gtccatcgtc cgatcatcaa ctttcttgta cgagcgcccg tctgaagtcg
     3301 ggtcgcccgt gacgggatag tctttcccgt caaacttgcc cgtccattcg ctgtgagtgg
     3361 ccttgccgtc cgcgtcggtg ccatccgtcg tgactttcac actgctaccc gcggccgcgt
     3421 agacaaccat ggtgtt
//
LOCUS       DASZZE010000377         1909 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_254032, whole genome shotgun sequence.
ACCESSION   DASZZE010000377 DASZZE010000000
VERSION     DASZZE010000377.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1909)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1909)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1909
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_254032"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1474
                     /locus_tag="VHD88_07250"
     CDS             <1..1474
                     /locus_tag="VHD88_07250"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HVS21627.1"
                     /translation="DTRRTTTAITYPLNQTIEVPFHGTTRLPRLKGNAKVRRQGRRGT
                     RVELAIENLPRAYELGGVYTTFVLWAISPDGHVDNMGEIKRSGSGLVDSKIDVTTSLQ
                     NFALIVTAEPHFLVQVPSRMVVLENMRPAMPRDAQIETANVQYIGNSSDYFRDSNVPT
                     IAESDYRNIPTALLGARQAINLARYAGAERDAPNELRTAEADLQQAEGAFRMKGSTDR
                     DVDILARAAISSGAKAEDMAVVRRASRERREETERRDLAVRAAEESTASANQEITRVK
                     AELDNERHARELAERDAVNATEQLRDARTEIARLREEIQTVRADSEDAKVKLARIEGE
                     RQAEDSRRSAEKRAADQRAAAENLKQALARFLTVRDSNRGMTLVLAESLWANPRSSNL
                     VAASATKLDQIGALLANNPDYQIVIESYTDDRGTESALQQLTQDRARVLSERLAAAGV
                     DVTRIQANGMGAQNPVVPNTTLANRAKNRRTEITLSLSGQ"
     gene            1582..1893
                     /locus_tag="VHD88_07255"
     CDS             1582..1893
                     /locus_tag="VHD88_07255"
                     /inference="COORDINATES: protein motif:HMM:NF013921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HVS21628.1"
                     /translation="MAQTLVSLMVHVIFSTKNRAALITPEIEPELFAYMGGILKNHES
                     RLLDAGGTADHVHLLISQSKNIALSSLMKEVKKDSSSWINERKRLQSLSLVGWLRRIF
                     D"
BASE COUNT          454 a          549 c          564 g          342 t
ORIGIN      
        1 cgatactcgg cgcacaacga ccgcaatcac atatcctttg aaccagacga ttgaagttcc
       61 ttttcacggc acgacgcgtc tgccgcgatt gaaaggcaat gcgaaggtgc gacgacaggg
      121 ccggcgcggc acgcgcgtcg agctggccat tgagaaccta ccgcgcgcat acgaactcgg
      181 cggtgtttac acaacgttcg tgctgtgggc catctcgccc gatgggcacg ttgacaacat
      241 gggcgagatc aagcgcagcg ggagcggtct cgtggattcc aagattgacg ttacgacgtc
      301 tctgcaaaac tttgcgctga tcgttactgc tgaaccgcac tttctggttc aggtgcccag
      361 ccgtatggtc gtgctggaaa atatgcgacc ggcaatgccg cgtgacgccc agatagaaac
      421 cgccaacgtt cagtacattg gcaacagcag cgactatttt cgagactcaa acgtgccgac
      481 aatcgctgag tctgactatc gcaacatccc gacggcgttg ctgggcgcgc ggcaggcgat
      541 caatctggcg cgttacgcag gcgcggagcg cgatgcgccg aacgaactgc ggaccgcgga
      601 agccgatctt cagcaagccg aaggagcctt tcgcatgaaa ggatcaaccg atcgagacgt
      661 tgacatcctc gctcgcgcgg cgattagcag cggcgcaaaa gcagaagaca tggccgtagt
      721 gcgtcgtgct tcgcgcgagc ggcgcgaaga gaccgagcgg cgggatctcg ccgtgcgtgc
      781 ggctgaagaa tcgaccgcca gcgctaatca ggaaatcacg cgtgtgaaag ccgagcttga
      841 caacgaacgc cacgcgcgcg aactggctga acgcgacgcc gtgaatgcga ccgagcaact
      901 gcgcgatgcg cgcacggaaa tcgcgcggct gcgcgaagag attcaaactg ttcgcgccga
      961 ctccgaagat gcgaaagtaa agctagcgcg aattgaaggc gagcgacaag ccgaagactc
     1021 gcgccgctcc gcggagaaac gagccgccga tcaacgcgcg gctgccgaaa atctgaagca
     1081 ggcactggct cgtttcctga cggttcgcga tagtaaccgc ggcatgacgc tcgtgcttgc
     1141 ggaatcgctc tgggctaatc cgcgatcgag caatctggtc gccgcgtccg cgacgaagct
     1201 cgatcaaatc ggcgcgctgc tcgccaacaa tcctgactat cagatcgtga tcgaatccta
     1261 cacggacgat cgcggcactg agagtgcgct gcaacagctc acacaggatc gcgcgcgcgt
     1321 tttgtccgaa cgcctcgccg cggctggcgt cgatgtcacg cgcattcaag ccaacggcat
     1381 gggcgcacag aatcccgtcg tgccaaatac gacgctcgcc aatcgagcga agaaccgcag
     1441 gactgagatc acgctgagtc tttcggggca ataggctttt gtccgcggag cggacgaatt
     1501 caatagccgt gggcagcgcc cacggatcag gaacaaatcg aaacccgacc ctgaaagggt
     1561 cgaactgata aggagtctcc catggcccaa actctcgtta gcctcatggt tcatgtgatt
     1621 ttctcaacca agaatcgcgc agccctaatc actccggaaa tcgagcccga attgtttgcc
     1681 tacatgggcg gaattctgaa gaaccacgaa tcgcgtttgc tcgacgctgg cggaaccgcg
     1741 gatcacgttc acctgctaat ctcccaatca aagaacatcg cgcttagtag cttgatgaag
     1801 gaagtaaaga aggacagttc gtcgtggatc aacgaaagga agcgtcttca gagcctttca
     1861 ttggtaggat ggttacggag gattttcgat tagccggtct gaagttgcg
//
LOCUS       DASZZE010000378        11329 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_79467, whole genome shotgun sequence.
ACCESSION   DASZZE010000378 DASZZE010000000
VERSION     DASZZE010000378.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 11329)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11329)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11329
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79467"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..894
                     /locus_tag="VHD88_07260"
     CDS             <1..894
                     /locus_tag="VHD88_07260"
                     /inference="COORDINATES: protein motif:HMM:NF024785.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HVS21629.1"
                     /translation="LNNAGVTVEKHDDALIALDKLDKIGPAGVEKEFAERGIEEAAGK
                     NLLGFFTALGSLEHAAEIAAGEDLLVKCAALNNAILGRLVEAVGDNEAGARGVDELQS
                     IMAFAAASGVASRMKIDPALARGLSYYTGAIIEIDVVDLAGSLGGGGRYDNLVGMFLG
                     KDVPACGFSLGLERIIVVMTERGMFPPQTISSPADVMVTIWNEDSVDESIALAAELRR
                     EGLRVDLYPEPDKMGKQFKYASSRSIPFVLIVGDDERARGEVAIKDMKSGEQRSVKRS
                     EIVNALSPPSGRGIKGEGLAP"
     gene            944..1252
                     /locus_tag="VHD88_07265"
     CDS             944..1252
                     /locus_tag="VHD88_07265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1572 family protein"
                     /protein_id="HVS21630.1"
                     /translation="MSEPLAQHYLADAIRTFRDYKKLAEGAFAQISDEDFFKTLDEKT
                     NSIAVNMKHMAGNMISRWTDFLTTDGEKPNRDRDMEFEMLPGTTKEDMLLGEGLELCL
                     "
     gene            1547..1915
                     /locus_tag="VHD88_07270"
     CDS             1547..1915
                     /locus_tag="VHD88_07270"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HVS21631.1"
                     /translation="MVTALHHVNVTVPPELEAATKDFYGSVLGLQQVPKPAASRQSGA
                     WYQIADTQLHLSVEDEPLGPLSLRHICFAVSDLGVAEKQFRDAGVEIIPDARPVPGSQ
                     RFYVRDPGGNQLEIAQQVSG"
     gene            2016..2420
                     /locus_tag="VHD88_07275"
     CDS             2016..2420
                     /locus_tag="VHD88_07275"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HVS21632.1"
                     /translation="MSFKLINPESLGAPRGYSNGVLTEAGGRLLFIAGQIGWDKQQKI
                     VSEDLAEQFDRALANVITVITEAGGQPEQIARLVIYVTDKNDYRARMKEIGERYRARM
                     GKHFPAMALVEVKSLFEDNAKVEIEGIAVLSS"
     gene            2509..3294
                     /locus_tag="VHD88_07280"
     CDS             2509..3294
                     /locus_tag="VHD88_07280"
                     /inference="COORDINATES: protein motif:HMM:NF045451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21633.1"
                     /translation="MLRPKRPLTWHVTLEVDTTASDREAAVRQTIEVIRKRLNAFGLS
                     NFDVQPQGAPASGRILVSLPDVSDRERLKNVITEGGKLEMTHVISPPSPMPCQTYANK
                     EEAIASLNRRGTIPVNSRVLPYVERAELRSGDDKDHENESKSTKWVVVESPAIINGTD
                     LRNASALPDPGRGRDDYEIQFSLNKTGADKFGAWTGVNINEYIGVVLNDEVKSIAFIK
                     SQIVDQGVITGRFTKQSAEDLALILRSGALPAPVKIVDEANSP"
     gene            3313..4104
                     /locus_tag="VHD88_07285"
     CDS             3313..4104
                     /locus_tag="VHD88_07285"
                     /inference="COORDINATES: protein motif:HMM:NF006107.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase family protein"
                     /protein_id="HVS21634.1"
                     /translation="MISPKSFLYEQRDGIAMITLNRPERLNAITFEVYRELTDFFATL
                     RDEKDVRVVVITGAGRAFCSGGDVRDIIGELQGRDAEGLLEFTRLTCELIRNMRALPK
                     PIVASLNGTTAGAGSCIALASDIRIAAEEAKIAFIFVKVGLAGTDMGATYLLPRVVGL
                     AKATELLMTGEFISAEEAERIGLYNRVVPRAELETATREFAEKLARGPALGLAKTKEM
                     LNREMHMGFESALESEAVAQALCMQHPDFEEAHTAFIEKREAKFK"
     gene            4179..4757
                     /locus_tag="VHD88_07290"
     CDS             4179..4757
                     /locus_tag="VHD88_07290"
                     /inference="COORDINATES: protein motif:HMM:NF013921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HVS21635.1"
                     /translation="MTAKIADGISWPHAPLHELSTRGTYFLTAGTYRKLHYFRGAARL
                     KVLHRGLLKVTRDFGWHLEAWVVFSNHYHFIAHSPHDEDGAESLSQMLGLLHEKTAKW
                     INRLDSAEERKVWHNFWETRLTYEKSYLARLNYVHQNPVRHGLVAVANQYPWCSASWF
                     ERVAKPSQVKTIYGFKTDKLKILDEYDVALEW"
     gene            4810..5964
                     /locus_tag="VHD88_07295"
     CDS             4810..5964
                     /locus_tag="VHD88_07295"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HVS21636.1"
                     /translation="MDSFIETTPFFSSDHRALAARMAEFAEREVEVRAGDDEGDVDEA
                     LRGYVLLLAEADLLRYAVASPGQPFDLRSFCIIRETLSYSSSLADLAFVMQGLGTYAI
                     SLAATEHVRDFWLARAANGKAIAAFALTEPDAGSDVAAIKTTARREDDSYIIDGRKRF
                     ISNAGVADFYTVFARTGTREDGRAEISAFIVSARMAGFAVAERTEMIAPHPIGELEFK
                     GCKVPAEDMIGEPGDGLRLSLQTLDMFRASVGAAACGMARRALDESILHAKSREQFGR
                     PLSGHQLIQEKLADMATELDAARLLVYRAAYLKDAGAERSTREASEAKLFATEAAGRI
                     IDQAVQIHGGTGLVRGTVVERLYRDVRALRIYEGTSEIQKLVIANQLLKE"
     gene            6092..6262
                     /locus_tag="VHD88_07300"
     CDS             6092..6262
                     /locus_tag="VHD88_07300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21637.1"
                     /translation="MVDHMYETLRLLTMADLRRCYPNADEDELKRRFAARALSREDVI
                     AAYGWDPELDGY"
     gene            6279..6848
                     /locus_tag="VHD88_07305"
     CDS             6279..6848
                     /locus_tag="VHD88_07305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21638.1"
                     /translation="MTTPTEVLVDVARVFEDLQIPYVVVGSFASSARGVRRATVDADL
                     VAELTLDHVQPIVDRLSHDYYIDDQAVRRAIITKRVFNAIHLESVFKVDVHISEDSFT
                     KKEMERRLPEKILPDSDTVVYIATAEDTVVAKLSWYRKGGDVSDRQWSDVLGILKLQK
                     ARLDNAYLREWSERLGVRDLLDKAISEAS"
     gene            6884..8254
                     /locus_tag="VHD88_07310"
     CDS             6884..8254
                     /locus_tag="VHD88_07310"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HVS21639.1"
                     /translation="MPTDKQPQSATIQVHALARRLGLFDATMIVMGGIIGSGIFINPY
                     VVAREVHSTALILGAWAFGGLIALAGAFIYAELSSQSSASGGQYVYLREAFHPSLAFI
                     YGWTLLLVIQTGGMAAVAVTFAKYLMELGGGQASDTRAALIAAVALALLTLINLFGVR
                     AGSTTQNLFMILKLIAIAALVVFGLTVSGAPRSENITISAASSPTIWNSLTAFGAALI
                     PVQFAYGGWQTACFVAGEVREPRRNLPRGLLLGVLGVIAVYLSVNLVCVYALGPQGLA
                     QTKTPASTVMRLALGERGARLIAFGIAISTIGFLSQSMLTAPRVYFAMAEDGLFFKSL
                     AQLNRAHVPAFAIALQGALAIIICFSGRYEQILNYVVSSDVVFFALTAACVFAFRRRG
                     QANDTNGSFRIPGHPFTTLFFIAACCAVAFSTIQRYPSNSLIGLAIMLSGLPVYFVWA
                     RQKPDR"
     gene            8343..9422
                     /locus_tag="VHD88_07315"
     CDS             8343..9422
                     /locus_tag="VHD88_07315"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HVS21640.1"
                     /translation="MNTQSIYMHWAKTRPKVKYDLALSGILNLPFKELDAKVEDLDLN
                     GDNSYGHRPLIDAIASHCSVATECVVTISGGTSMANHLAMAAALEHGDEVLIEQPTYE
                     PLLAVANYFGAKIRRFSRSLDNGFRVDVKEIATQITPGTRLIVLTNLHNPSSTLVDEE
                     TLREIGELARSVRARVLVDEVYLEAMFETAPRSSVHLGPEFIATSSLTKGYGLSGLRC
                     GWILAKPEMAQRMRLLHDIFGALAPHPAERLSVVAFAQLPTFIARAKGILESNRAMLN
                     EFLDSREELKVVRSESGTTSFPLLLKGRVEDLCALLHEKYDTAVVPGRFFEMPQHFRI
                     GMCCEPELFKIGVERLGLALDDLRA"
     gene            9419..10558
                     /locus_tag="VHD88_07320"
     CDS             9419..10558
                     /locus_tag="VHD88_07320"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HVS21641.1"
                     /translation="MKISIIGGGPAGMYFAILMKKADAAHAITICERNGADDTFGWGV
                     VFSGKTLSNLRAADEPSHAEITRDFEAWDNVDVVHRDQRVSIHGNSFSGIARIRLLKI
                     LQRRCEELGIQISFRNEIADVDSLKADCDLLVAADGVNSLVREKFKTQFQPDLSIRPN
                     KYIWYGTNQLFHGLTLTFRETTAGVFAAHSYKFDKTTSTFIVECDPQTWTNGGFAEMS
                     DEETRAYLAGVFAQDLNGHPLLSNNSKWINFVLVKNTHWSYQNVVLLGDALHTAHFSI
                     GSGTKLAMEDAIALKESFDETSDVGAALKQFEEVRKPIIEDYQAAAYESMLWFESARQ
                     HMHLAPIDLTYVLMTRSGRVDHGSLKQRDPKFIAAYDDFRTKGKE"
     gene            complement(10574..>11329)
                     /locus_tag="VHD88_07325"
     CDS             complement(10574..>11329)
                     /locus_tag="VHD88_07325"
                     /inference="COORDINATES: protein motif:HMM:NF013380.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HVS21642.1"
                     /translation="YTMAGFLSALNNRDDGYGGSRENRVRLPLEVYRAVRERVGDDYV
                     VGARFLGDEVIAGGNRVDAAVYFGVEFARAGMDYLSVSKGGKFEDAEQPKVGQAVYPY
                     TGQSGYECMPTTLSDERGPFGRSVPLVASIKRAVNAAGFTTPIVATGGITTFEQAESI
                     LQSGGADIVGMARQALADPDWFLKVKLGRGDEVRRCTYTNYCEALDQAHRQVTCKLWD
                     RKQLNEAGIPVAEDGRRRLLAPDWTGKGETGKE"
BASE COUNT         2550 a         3023 c         3254 g         2502 t
ORIGIN      
        1 ctgaacaatg ccggcgttac ggtggaaaag cacgacgacg cattgattgc tctggacaag
       61 ctggacaaga ttgggccggc aggtgttgaa aaggagttcg ctgaacgtgg catcgaggag
      121 gccgccggta agaacctgct cggcttcttc actgcgctcg gttcgctgga gcatgccgcc
      181 gagattgctg ctggcgaaga ccttttagtg aagtgcgcgg cgttgaataa cgcgatcctg
      241 ggccggctcg tcgaagccgt gggcgacaat gaagccggcg cgcgaggagt tgatgaattg
      301 caatcgatca tggcatttgc tgccgcgagc ggagttgcat cgcggatgaa gatcgatccg
      361 gcgctggcgc ggggactgtc ttactacacc ggcgcgatca ttgagattga tgttgtcgat
      421 ctcgcaggaa gtctgggtgg cggcggtcgt tacgacaatc tggtggggat gtttctgggc
      481 aaagatgttc cggcgtgtgg cttctctctt gggcttgagc gaatcatcgt cgtcatgaca
      541 gaacgcggga tgtttccgcc gcaaacgatc tcgtcaccgg ctgatgtgat ggtaacgatc
      601 tggaatgaag actcagtcga cgaatcgatt gccctggccg cggaattaag aagggaaggc
      661 ttgcgcgtcg atctctatcc cgaaccagac aagatgggga agcagttcaa gtacgcgtcg
      721 tcgcgcagca ttcctttcgt gctaatcgtc ggcgacgacg agcgggcgcg cggcgaggtt
      781 gcgatcaaag atatgaaatc tggagagcag cgaagcgtga agcgcagtga gatcgtgaac
      841 gcgttgtccc ctccctctgg gaggggaatt aaaggggagg gattagcgcc gtaagccctc
      901 tcccctggcc cctctcccaa aagggagagg agaagacaga accatgagcg aaccacttgc
      961 ccaacactat ctcgccgacg cgatcagaac ttttcgcgac tacaagaagc tcgcggaagg
     1021 cgcgtttgcg caaatcagcg acgaagactt cttcaaaaca ctcgacgaaa aaacgaacag
     1081 cattgccgtt aatatgaagc acatggcggg caacatgatc tcgcgctgga ctgactttct
     1141 gactaccgac ggtgagaagc ccaatcgcga tcgcgacatg gaattcgaga tgctgcccgg
     1201 tacgacgaaa gaagatatgc tactgggaga agggttggaa ctgtgccttt gattcgatcg
     1261 aatctttgca gccggaagac ctgatacgca cagttaggat ccgcggacag gaacacacag
     1321 tcgtgcaggc catcaatcga caacttgcgc attatgccta tcacgtcggt cagattgttt
     1381 ttctcgcgaa gcatttcaaa tcgactgggt ggcaaagctt gagcgtgccg cgcgcaacaa
     1441 atcggccgag ttcaatgcgc ggttacagaa ccgggagcgg tagcgaccgg gtaaacagcg
     1501 ccggcaggat gcctgcgaac cgccgacacg gatgtcggcg ctccagatgg tcactgcact
     1561 ccatcatgta aatgtaacgg tcccgcccga gctcgaagcg gcgacaaagg atttctatgg
     1621 ctcggtgctt gggctgcagc aggtgccgaa gccggcagcg tcgcggcaaa gcggcgcttg
     1681 gtatcagatt gccgacacgc aattgcactt gtcggtggaa gatgagccgc tcggcccgct
     1741 gagcttgcgt cacatttgct tcgcagtttc cgatctgggc gtagccgaaa aacaatttcg
     1801 cgacgcgggc gtagagatta ttcctgacgc tcgaccagtt ccgggttcgc agcgtttcta
     1861 tgtgcgcgat ccaggcggca accaactcga gattgcccaa caagtctctg ggtaactccg
     1921 tgttcccctg tgacctctgt ggttgaaagc cttcgcaaca gtatttcacc acggaggaca
     1981 cagagaacac ggaggattca gagagaaaaa cagaaatgag tttcaagctc atcaatcctg
     2041 aatcgctcgg cgcgccacgc ggttattcga acggcgtttt gaccgaagcc ggcggtcgat
     2101 tgcttttcat cgccggccag attggttggg ataaacagca gaaaattgtc agcgaggatc
     2161 ttgccgaaca attcgatcgc gcgctcgcaa atgtcattac tgtcattacc gaagcaggtg
     2221 gacagccgga acaaatcgcg cggctggtta tctatgtaac ggacaagaac gactatcgcg
     2281 cgcgtatgaa agaaatcggg gagcggtatc gtgcgcgcat gggcaagcat tttccggcga
     2341 tggctctggt tgaggtgaag agtttgtttg aagacaatgc gaaagttgag attgaaggga
     2401 ttgctgttct gagttcttga tgattcagcg aggcaaatgt tcacgcacaa gagactcaac
     2461 cctccaatcg caatcctgct gctaacggct gctggattag cctgctcgat gcttcgtccg
     2521 aagcgtccgc tcacctggca cgtaacgcta gaggtcgaca ctactgcgtc cgatcgagaa
     2581 gcggcggtca gacagacgat tgaagtaatc aggaagcggc tcaacgcttt cggcctctcg
     2641 aactttgatg tccaaccaca gggcgctccc gcgagcggtc ggattctggt gagtcttccg
     2701 gatgtttccg atcgcgagcg attgaagaac gtcatcactg agggaggaaa actcgagatg
     2761 acccacgtta tcagtccgcc cagtccgatg ccctgccaga cctacgccaa caaagaagaa
     2821 gccatagctt cattgaacag gcgcggaacc attcccgtaa atagccgagt gttgccctat
     2881 gtcgagcgag ccgagttgag aagcggggac gacaaggacc acgagaatga gtcgaagtcc
     2941 acaaaatggg tggtggttga atcgccggcg atcatcaacg gcaccgatct taggaacgcc
     3001 tcggcactac ccgacccagg tcgcggcagg gatgactatg agattcagtt ttcgctgaac
     3061 aagacaggag cggacaagtt tggagcgtgg actggagtga acatcaacga atacatcggc
     3121 gtggtactca acgacgaagt caagtcgatc gcctttatca agtcacagat tgtcgatcag
     3181 ggcgtaatca ctggccgttt cacaaagcag tccgcagagg atctcgcttt gatcctacgt
     3241 tcaggcgcgc tgcctgcgcc agtaaagatc gtcgacgaag ctaatagccc ataaccggcg
     3301 ccgggacaaa acatgattag cccgaaaagt tttctctacg aacaacgcga cggcatcgcg
     3361 atgattacgc tcaaccgtcc cgagcgtctg aacgcgatta cgtttgaggt ctatcgcgaa
     3421 ctcaccgatt tctttgcgac gttgcgcgat gaaaaggacg tgcgcgtcgt ggtgatcacg
     3481 ggcgccgggc gcgcgttctg ttccggcggc gacgtgcgcg acatcatcgg cgaacttcag
     3541 ggccgcgacg cggaaggctt gctcgaattc actcgtctga cctgcgaact gatccgcaac
     3601 atgcgcgcgc tgccaaagcc gattgtcgcc agtctgaacg ggacgacggc gggcgccggt
     3661 tcgtgcattg cgctcgcttc tgacattcgc atcgccgccg aagaagcgaa gattgctttc
     3721 atctttgtga aagtcggact cgcgggcacc gacatgggcg cgacttatct tttgccgcgc
     3781 gtcgttggtc tggcgaaagc gactgaattg ttgatgaccg gcgagttcat ctctgctgaa
     3841 gaggccgagc gaattggtct gtacaatcgc gtggttccgc gtgctgagtt agaaacggca
     3901 acacgcgagt ttgccgaaaa gttagcgcgc ggtccggcgt tgggtttagc caagacgaaa
     3961 gaaatgctga atcgcgaaat gcacatgggt tttgagtcag ccctggagtc cgaagccgtg
     4021 gcgcaggcgt tgtgcatgca gcatccggat tttgaggaag cgcatacggc gtttattgag
     4081 aagcgcgaag cgaagttcaa gtaatttgga gtgcggtggc aagcgcagcg cgacaccgct
     4141 ttggatagcc ggtcccaaac aaacaagctg aattcttgat gactgcaaaa atagcagacg
     4201 gaatttcatg gccccacgcg cctctgcacg aactctccac gcgcggcacc tatttcctta
     4261 ctgctggtac atatcggaag ctgcattact ttcgaggagc tgcgcggttg aaagttttgc
     4321 atcggggctt gcttaaagtc actcgcgatt tcggttggca cttggaggct tgggttgtgt
     4381 tttcgaatca ctatcacttt atagcgcact ctcctcacga tgaggatggg gctgaaagtc
     4441 tctcgcaaat gctcggtctt cttcacgaga aaactgccaa atggatcaat cggctcgaca
     4501 gtgcggaaga acgcaaagtt tggcacaatt tctgggagac acgattgact tatgagaaat
     4561 cgtaccttgc gcggctaaac tatgtgcatc agaatccggt aaggcatggc ttggtagcag
     4621 tggccaacca gtatccatgg tgctcggcaa gttggtttga acgcgtcgca aagccatctc
     4681 aagtgaaaac aatctacggt ttcaaaactg ataaattaaa gattctcgac gaatatgatg
     4741 ttgcgcttga gtggtagctc agcgcaatcc aaagcgccgt cgtcgcttcg ctctgccggc
     4801 gcactccaaa tggactcttt catcgaaaca actccattct tctcttccga tcatcgcgca
     4861 ctcgcggcgc gcatggctga gtttgccgag cgcgaagttg aagtgcgcgc cggcgatgat
     4921 gaaggtgatg ttgacgaagc tttgcgcggt tatgtcctgc tgctcgccga agctgatctg
     4981 ctgcgctacg cagtggcgtc accgggccag ccgttcgatc tacgctcgtt ttgcatcatc
     5041 cgcgaaacgc tttcttactc ttcatcgctt gccgatcttg cttttgtgat gcaggggctc
     5101 ggcacttatg cgatcagtct ggcagcaacg gaacatgtcc gcgatttctg gctggcgcgc
     5161 gcggccaacg gaaaagcaat cgcggctttc gctttgaccg agcccgatgc cgggtccgat
     5221 gtagccgcga tcaagaccac cgcgcggcgt gaagacgact cctacatcat tgatggccgc
     5281 aagcgcttca tctcaaacgc cggcgtggcg gatttctaca cggtgtttgc gcgcacgggg
     5341 acccgtgaag atggccgcgc ggagatttcc gcgttcatcg tcagcgcgcg catggcgggc
     5401 tttgcggtgg ccgagcggac cgagatgatc gcgcctcatc cgattggtga actggaattc
     5461 aaaggctgca aggtccccgc cgaagacatg attggcgagc cgggcgatgg cttgcgactg
     5521 agcttacaaa cgttggacat gtttcgcgcc agcgtcggcg cggcggcgtg cggcatggcg
     5581 cggcgcgcgc tcgatgaaag cattctgcat gcaaagtcgc gcgagcaatt cggtcgcccg
     5641 ctctcaggcc atcagttaat tcaggagaag ctggcagaca tggcgaccga actcgacgcc
     5701 gcgcgcctgc ttgtctatcg cgctgcttat ttgaaagacg cgggcgcaga acgctcgaca
     5761 cgcgaggcca gcgaagcaaa gctgttcgct acggaagcgg ccggccgcat catcgatcaa
     5821 gccgtgcaga ttcatggagg caccggcctg gttcgcggca ccgtcgtcga acggctctat
     5881 cgcgacgtgc gcgccttacg gatttacgaa ggcacttcag agattcaaaa gctggtaatc
     5941 gcgaaccagc ttttgaagga gtaaactgtg cgaaagttga ttcttcgaat tagataaggg
     6001 catgaaaact ctctctccag atacatctcc tgaagcggaa gctgtgttgc tggaactatt
     6061 gaggcgcgca ccgatctgga ggcgtctcca aatggtggat cacatgtacg agactctgcg
     6121 tctgctgacg atggccgatc tgcgacgttg ctatccgaat gcggacgaag atgagcttaa
     6181 gcgccgcttc gccgcacgcg cgctcagccg ggaagatgtc atcgccgctt acggctggga
     6241 cccggagctg gacggatact gattcatccg gaaaagtcat gacaacccca actgaggtct
     6301 tggttgacgt agctcgcgtc ttcgaagatc tccaaattcc ctacgttgtt gtgggctcgt
     6361 ttgcgagttc ggctcgcggc gttcggcgcg caacggttga cgcggacctc gttgctgaac
     6421 tcacgctcga tcacgtccag ccgatcgtgg atcgcctctc gcatgattac tacatcgatg
     6481 atcaagcggt gcgacgagcc ataattacga agcgcgtgtt taatgctatt cacctggagt
     6541 cagtgttcaa ggtagatgtc catatttccg aagatagttt tacgaagaaa gaaatggaga
     6601 gaagactgcc ggagaagata ctgccagact ccgatactgt agtgtatatt gcgactgccg
     6661 aggacacagt ggtggcaaag ctgtcgtggt atcggaaagg tggggacgtt tccgaccggc
     6721 agtggtcgga tgtgttgggc atcctgaagc ttcagaaggc caggctcgac aatgcgtatc
     6781 tgcgagaatg gtccgaacga ctaggcgttc gcgatcttct ggataaggcg atcagcgaag
     6841 catcgtgaac actaaccaga tcgatttcgg ttgaatattc aaattgccca cggacaaaca
     6901 accacaaagc gccaccatac aagtccatgc ccttgcccgc cgtctcggcc tctttgacgc
     6961 gacgatgatc gtaatgggcg ggattatcgg ctcgggcatc ttcatcaatc cttacgtcgt
     7021 cgctcgcgaa gtccactcga ccgctttgat tctcggcgcg tgggcgtttg gtggtttgat
     7081 tgcgcttgct ggcgcattca tttacgccga actctcttcg caaagctcgg cgagcggcgg
     7141 tcagtacgtt tatctgcgtg aagcttttca tccgtcactg gcattcatct atggctggac
     7201 gttgctgtta gtgattcaga ccggaggcat ggccgccgtc gcggttacgt tcgcgaaata
     7261 cttgatggag cttggcggcg ggcaagccag cgacacgcgc gcggcgctga tcgccgcagt
     7321 tgctctggct ttgttaacgc tcatcaacct cttcggcgtg cgcgccggca gcacgacgca
     7381 gaacctcttc atgatcttga aactgatcgc gatcgcggct ttagttgtgt tcggactgac
     7441 ggtcagcggc gctccgcgca gcgagaacat aacgatctcc gcggcctcat caccgactat
     7501 ctggaactct ttaaccgctt ttggcgcggc gctgatcccc gtgcagttcg catacggcgg
     7561 ctggcaaacg gcgtgcttcg tcgccggaga agtacgcgag ccgcgccgga atctgccgcg
     7621 cggattgttg ctcggagtgt tgggcgtgat tgcagtttat ctttcagtga acctcgtttg
     7681 cgtgtacgcg ttagggccgc aaggattagc tcagacaaaa actccggcgt ccacggttat
     7741 gcgcctggcg ctgggcgaac gtggcgcgcg attgattgct tttggaatcg caatttctac
     7801 gatcggattc ttgagtcaaa gcatgctgac cgcgccgcga gtttatttcg cgatggccga
     7861 ggacggcttg ttcttcaaga gcctggcgca gctaaatcgc gcgcacgtgc cggcgttcgc
     7921 gatcgctttg cagggagcgc tggccatcat catctgcttc tctggtcgtt acgaacaaat
     7981 tctgaattac gtggtttcgt ccgacgtagt tttctttgcg ctcacagccg cttgcgtgtt
     8041 cgcgtttcgt cgtcgaggcc aggccaacga tacgaacgga tcgtttcgca ttcccggtca
     8101 ccctttcacg acgctgttct ttatcgcggc gtgctgcgct gtcgcgttca gcacgattca
     8161 gcgctacccc agcaacagtc tgattggatt ggctataatg ctctccggtt tgccggtgta
     8221 tttcgtgtgg gcacggcaga aacccgaccg ttagggaggg tgccggtggc atatcgctcg
     8281 ataggctgca cccttcctta cggtcgggtt tctgatgcga agagtgggaa cgactgatca
     8341 aaatgaatac tcaatccatc tacatgcatt gggccaagac gcggccaaaa gtgaaatacg
     8401 atctcgcgtt gagcggcatc cttaacctgc cgttcaaaga actcgacgcg aaggttgaag
     8461 acttggatct caacggtgat aactcttacg gacatcgacc gctgattgac gcgattgctt
     8521 cgcactgtag tgtcgcgacc gaatgcgtcg taacgatttc cggcggtact tcgatggcga
     8581 accatctcgc gatggcggca gccctcgaac atggcgacga agttctcatc gagcagccta
     8641 cttatgaacc ccttctcgcg gttgccaatt atttcggcgc gaagattagg cgcttctcgc
     8701 gatctcttga caacggtttt cgtgttgacg tgaaagagat cgcgacgcag attacgccag
     8761 gaacacggct gattgtgctg acgaatctgc acaacccgag tagtacgtta gttgatgaag
     8821 aaaccctgcg agagatcggc gaactggcga gaagcgtgag agcgcgtgtt ctcgttgacg
     8881 aggtttacct ggaagcaatg ttcgaaaccg cgccgcgatc gtcggttcat cttggcccgg
     8941 aattcatcgc gaccagcagc ttgacgaaag gttacgggtt gagcggtctg cgttgcggat
     9001 ggattctcgc caagccggaa atggcgcagc gaatgcgttt gcttcacgat attttcggcg
     9061 cgctcgcgcc gcatcccgct gaacggctga gtgtagttgc gtttgctcaa ctgccaacgt
     9121 tcatcgctcg tgccaaagga atcttagaga gcaatcgtgc gatgctcaac gaatttcttg
     9181 attcgcgcga ggaactgaaa gttgtacgaa gtgaatcagg cactacttcc tttccactct
     9241 tgctgaaggg gcgcgtcgaa gatctctgcg ctttgcttca cgaaaaatac gacaccgccg
     9301 tggtacccgg acgcttcttt gaaatgccgc aacactttcg catcggcatg tgctgcgagc
     9361 ctgagctttt caaaattggc gtggaaagat taggcttggc cctcgacgat ctgcgcgcat
     9421 gaaaatcagc atcatcggcg gcggcccggc cggcatgtac ttcgccatcc tcatgaagaa
     9481 ggctgacgcc gcgcacgcaa tcaccatctg cgaacgcaac ggagccgacg atacttttgg
     9541 ttggggcgtg gtgttttctg gaaagacgct cagcaatctg cgcgcagccg atgaaccgtc
     9601 gcacgctgaa atcacgcgcg actttgaagc ttgggataat gttgacgtag ttcaccgcga
     9661 tcagagagtt tcgattcatg gcaacagctt ttccggaatt gcgcggattc ggcttctcaa
     9721 gatcctgcaa cgtcggtgtg aagaactcgg catccaaatc agttttcgta atgaaattgc
     9781 cgacgttgat tcactaaagg ctgattgtga tcttctcgtc gccgccgacg gggtaaacag
     9841 tcttgtcaga gaaaaattca aaactcaatt tcaacccgac ctcagcatcc gtccgaacaa
     9901 atacatctgg tatggcacta atcagttgtt tcatggattg acgctcacct ttcgcgagac
     9961 gacagcaggt gttttcgctg cgcattccta taaattcgac aagacaacca gcaccttcat
    10021 cgtcgaatgc gatccgcaga cttggacaaa cggcggattc gccgagatgt cggatgaaga
    10081 aacgcgcgca tatctcgccg gcgtgttcgc acaggatctg aacggtcatc cgctgctttc
    10141 aaacaactca aaatggatca acttcgtgct cgtaaagaac acgcattgga gttatcaaaa
    10201 cgtcgtgttg ctcggcgacg cactgcacac agcgcatttc tcgatcggtt caggcacgaa
    10261 gctggcgatg gaagatgcaa tcgcattgaa agaatctttc gatgaaacat cggatgtggg
    10321 ggcggctttg aaacaattcg aagaagtgcg caagccgatc atcgaagact atcaggccgc
    10381 tgcgtatgaa agcatgttgt ggttcgagag cgcgcgtcaa catatgcatc ttgcgccgat
    10441 tgatctgacc tatgtgctca tgacccgcag cgggagagtc gatcatggca gtttgaagca
    10501 gcgagatccg aagttcatcg cagcctacga cgattttagg acaaagggca aagagtaaag
    10561 gaagagtcgt cccttactcc ttccccgttt cccctttacc tgtccaatca ggcgccaaca
    10621 aacgccttct tccgtcctcc gccaccggga ttccagcttc gttcagttgc tttcgatccc
    10681 agagcttaca ggtgacctga cgatgcgcct gatctaaagc ttcacaataa ttcgtgtagg
    10741 tgcaacggcg cacttcatcg ccgcgaccga gcttcacttt caagaaccaa tcaggatcgg
    10801 cgagcgcctg acgcgccatg ccgacgatgt ctgcgccacc gctttgaaga attgattcag
    10861 cttgctcgaa tgtagtgatg cccccagttg cgacaatcgg cgtcgtgaat ccagcggcat
    10921 taactgcgcg cttgatggag gcgaccaagg gcaccgatcg gccgaacggg ccgcgttcat
    10981 cggaaagcgt cgtcggcata cattcgtaac cactctggcc cgtgtaagga taaacagcct
    11041 ggccgacttt cggttgctcg gcgtcttcga acttgccgcc cttcgagaca gaaagataat
    11101 ccataccggc acgcgcgaat tcaacgccaa agtaaacggc agcgtcgaca cgattaccgc
    11161 cggcgatcac ttcatcgcca agaaaacgcg cgccgacaac gtaatcatcg ccgacacgct
    11221 cacgcaccgc gcgataaact tccagcggca gacgcacgcg attctcgcgc gacccgccgt
    11281 agccatcgtc gcgattgttg agcgcgctga ggaacccggc catcgtgta
//
LOCUS       DASZZE010000379         5059 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_290162, whole genome shotgun sequence.
ACCESSION   DASZZE010000379 DASZZE010000000
VERSION     DASZZE010000379.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5059)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5059)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5059
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290162"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(203..556)
                     /locus_tag="VHD88_07330"
     CDS             complement(203..556)
                     /locus_tag="VHD88_07330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21643.1"
                     /translation="MFERRRDQLAPIPVFVKRLVASLGIAFCLIGLALTIGIAGYHSL
                     GGFGWVDSLLEASMILGGMGPVNQLANDGVKVFASMYALFSGLIFIAVMGVVLSPIVH
                     RFLHKFHIDGDDGDQ"
     gene            complement(730..1680)
                     /locus_tag="VHD88_07335"
     CDS             complement(730..1680)
                     /locus_tag="VHD88_07335"
                     /inference="COORDINATES: protein motif:HMM:TIGR00147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HVS21644.1"
                     /translation="MTLPLVIVNPASADGATREAWPKIASDLRTHFGAFSVAFTEAIG
                     DGRSLAAEAAQQGTKLIIACGGDGTISEVANGIIESNREAELGILPSGTGGDFRRSLK
                     ISTNVATAARALRDGRTRVIDAGRVTFVNDAGERETRFFVNVASFGMSTAVLERQRSG
                     DATKWLPSLGSRKLRSKLSYAAATVQTTLQSSASEVYVQLDDQPERRLRVAEFAVANA
                     RYYGGAMKIAPDAKLDDGLFDVITIGDAGAFRILANSPRLYFGAHLRMDEVNHALAKR
                     IVARPANKDENLAVELDGELVGRLPVAFEIAPRALRVRCP"
     gene            complement(1785..2687)
                     /locus_tag="VHD88_07340"
     CDS             complement(1785..2687)
                     /locus_tag="VHD88_07340"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HVS21645.1"
                     /translation="MDYLSLGHPDSMTVTDVRERDQLAAEPSAGELAVLSPFERFAFR
                     VTHRMNKGRWKRFWTWCQSVLGAGWIHLSTYNLMRVYGLENIEAVSKDRPILLVANHR
                     SFFDMYVVSTTLFRRTRWCKQLFFPVRGRFFYQSPAGMFVNLVMGWWSMYPPFFASGE
                     NPLREKRDFDKYSFRRLTKLCREGPGNVIGFHPEGTRNKSNDPYSYLRPQPGVGKLIK
                     DANPQVVPVFIAGLGNKLAKQVLGNWFGGELIRIHFGTQLDLSEFIAKKDHVRTYKEI
                     AEFVMSKIVQLGETDCELHSNAKS"
     gene            complement(2651..2998)
                     /locus_tag="VHD88_07345"
     CDS             complement(2651..2998)
                     /locus_tag="VHD88_07345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21646.1"
                     /translation="MALEKRTRVEIFLPIRPDTTVYKTVTDWLSEEMAVARGGSTLTT
                     PFTGLYASSATRGSVVRDTIQILFCDFDLDVDDPVHRAKLLTYLNDVRLLLMEILREE
                     DVWITYHSVTRIL"
     gene            complement(3211..>5059)
                     /locus_tag="VHD88_07350"
     CDS             complement(3211..>5059)
                     /locus_tag="VHD88_07350"
                     /inference="COORDINATES: protein motif:HMM:NF014961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008705 - methionine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="vitamin B12 dependent-methionine synthase
                     activation domain-containing protein"
                     /protein_id="HVS21647.1"
                     /translation="AGLDAAIVNASKIEPLNRIGEQELKVARDLIYDRRQFDGEVCTY
                     DPLTQFTTLFENVKAKSAKKASKGETVEERLKNHIIDGEKIGLEGELKTALEKYPALD
                     IINNILLEGMKVVGDLFGNGQMQLPFVLQSAEAMKAAVRFLEPFMEKKGGATAKGTMV
                     LATVKGDVHDIGKNLVDIILTNNGYKVVNLGIKQTIDNILKAHEEHKADAIGMSGLLV
                     KSTLVMKDNLELMNERGITVPVVLGGAALTRKYVDDDLKSIYQGRLYYARDAFEGLHT
                     MDRLVSGANGEGEMKNESAKAAAAGGADNDAEDVEDMVGEEAKLGIRKPVKPRGSLRI
                     SGDTTHTTRSEVRADVPIPNAPFFGSRVVADAPLDDVFAFVNETALFKGQWQFKQART
                     PADQYQALVRDTVRPIYEELKARCKREELLTPRVVYGYFPCQSSGNDLVVYHEDEQTE
                     RARFDFPRQPAGKHLCLADFFASQESGKIDVVAFHLVTVGRRASEYAQELFKADNYAD
                     YLYFHGLSVESAEALAEMWHKRIREELGIAEQDAKEVTKLFHQSYQGSRFSFGYPACP
                     NLEDQAKLFELLDPLRIDVELSEEFQLEPEQSTSAIIVHHPDAKYFSIE"
BASE COUNT         1128 a         1449 c         1342 g         1140 t
ORIGIN      
        1 tcaatgagct cttccaagac cgccataaca tcgctgccgt tcacgagaat cattaaaccg
       61 tcttccggac gagtgagtct gcacccatcg gcgaaaagcc attgatcgag cagaagagtt
      121 ccaatgtgtt atccaaccac tttgccccaa gacaataacg agttttgttg aagacaaccg
      181 cagctggatc tctgaatttt tctcactggt cgccatcatc cccgtcaata tgaaacttgt
      241 ggagaaagcg atgcacgata ggcgagagga cgacgcccat caccgcgatg aagatcagcc
      301 cgctgaacag cgcgtacatg gaggcgaaga ctttcacgcc gtcgtttgcg agttgattca
      361 cgggacccat accgccgaga atcattgaag cttcgagcag agaatcgacc cagccaaatc
      421 cgcccagcga atgatagccg gcgatcccga tcgttaaagc aagcccgatc aaacagaacg
      481 cgattccgag agatgcaact aatcgcttga cgaagactgg tatcggcgca agctgatcgc
      541 gtctccgttc gaacaccagt gctctatgct tagacctatg acttcgcttg gccaatggct
      601 cactccttag aaatgtcttt ttccctctcc ctttgggaga gggtcaggga gagggcgcaa
      661 gtgcgaaacc gaagcagtcc ctctccccgg ccctctccca aagggagagg gagtttttca
      721 gcggacttct cagggacatc ttacgcgcaa cgcgcgcggc gcgatttcga atgccaccgg
      781 caggcgaccc acgagttcgc catcaagttc gaccgcgagg ttttcatcct tattagctgg
      841 gcgcgccacg attcgtttgg cgagcgcgtg gttgacttca tccatgcgta ggtgcgcgcc
      901 gaaatagagc cgcggtgaat tcgcgagaat ccgaaacgcg ccggcgtcac caatcgtgat
      961 cacgtcaaaa agtccgtcat caagtttcgc atccggcgca atcttcattg cgccgccata
     1021 gtagcgcgcg ttggcaacgg cgaactccgc aacgcgcaaa cgccgctcag gctggtcgtc
     1081 tagctgcaca taaacctcgc tggccgaaga ctgtagcgtc gtctgcactg tcgctgccgc
     1141 gtaagagagt ttgctgcgga gcttgcgcga accgagtgac gggagccact tcgtggcgtc
     1201 gccgcttcgc tggcgttcaa gcacggcggt gctcatccca aacgaagcga cgttgacgaa
     1261 gaaacgcgtt tcgcgctcgc cggcatcatt cacaaaagtg acgcgacccg cgtcaatcac
     1321 gcgcgtgcgg ccgtcgcgca acgcgcgcgc cgccgtggca acgttggttg atatcttgag
     1381 gctgcggcgg aaatcaccgc cagtgccgct cggcaagata ccgagttctg cttccctgtt
     1441 cgattcaata attccattcg cgacttctga gatcgtgccg tcaccgccgc aggcgatgat
     1501 tagtttcgtt ccctgttgcg ctgcctccgc cgccagactg cgcccgtcgc caatcgcctc
     1561 ggtgaaagca actgagaacg cgccgaagtg cgtacgaaga tcgctggcaa tcttcggcca
     1621 ggcctcgcgc gtcgcgccgt cggcggatgc ggggttaacg attacaagag gcaaagtcat
     1681 ggatcgttca cgaggatttt aacgcaaagg gtgcagaggg ttccgcagag ttacgcagag
     1741 aaaacctttg cgctcctctg cgagatcctc tgcgtactct gcggttaaga tttcgcattc
     1801 gaatgcaatt cgcaatcagt ttcaccgagc tgcacaatct tgctcatcac aaactcagca
     1861 atttctttgt aggttcgcac atgatccttc ttcgcgatga actctgacaa gtcaagctgc
     1921 gtgccgaaat gaattcgaat cagctcaccg ccgaaccagt ttcccaagac ttgcttagcc
     1981 aatttgttgc cgaggccggc gatgaaaacc gggacgactt gcgggttcgc gtctttgatc
     2041 agtttaccaa caccgggttg cggccgaaga tatgaatacg gatcgttgct cttgttgcgt
     2101 gtgccttcag gatgaaagcc aatgacattg cctggacctt cgcggcaaag tttcgtcaga
     2161 cgtcgaaacg aatacttgtc gaagtcgcgc ttttcgcgaa gcggattctc gccggaagcg
     2221 aagaacggcg gatacatcga ccaccatccc atcaccaggt tcacgaacat cccggccggc
     2281 gattgataaa agaagcgccc acgcacggga aagaaaagct gtttacacca ccttgtgcga
     2341 cggaataacg tcgtcgaaac cacgtacatg tcgaagaacg accgatggtt ggcgacgagc
     2401 agaatgggcc gatccttcga aacggcttcg atattctcga ggccgtaaac gcgcatcagg
     2461 ttgtaagtcg agagatgaat ccaacccgcg ccaagcacgc tctgacacca cgtccagaag
     2521 cgcttccagc ggcccttatt catgcgatgc gtgacgcgga acgcgaagcg ctcgaagggg
     2581 gagagcacgg ctaactcacc ggccgagggt tcagcggcta actgatcacg ttcacgaaca
     2641 tccgtaaccg tcatagaatc cgggtgaccg agtgataggt aatccacacg tcctcctcgc
     2701 gcaagatctc catcagcaga aggcgaacgt cattcaggta agtcagtaat ttcgcgcgat
     2761 gaaccggatc atcaacatcc aggtcaaagt cgcagaataa tatttggatt gtgtcgcgaa
     2821 ccacgctgcc gcgcgtggct gaggaagcat atagaccagt gaatggcgtt gtgagcgtgg
     2881 aaccaccgcg ggcaacagcc atttcttcag aaagccagtc cgtcaccgtc ttgtaaacgg
     2941 ttgtgtccgg tctgatcgga agaaagattt caacccgcgt ccgtttctct aaggccacga
     3001 ataagctccc tgagtttggc tgcgcgctcc ggaaaggcct gcattatctc aatggttttc
     3061 tcaggtgtgt tctccagggt tataggatgt ctcgtggtct tttgccggag gtcgtcatgt
     3121 gcgtgctgat cttcgcggga cacatcttga attaactgtt tgctcattgt cgaatcatac
     3181 ttcctttcgc cggatttcga gaagccagag ttactcgatc gaaaaatact tcgcatccgg
     3241 atgatgcacg atgatcgcgg aggttgactg ctcaggctcg agctgaaact cttccgataa
     3301 ttccacgtcg atgcgtaagg gatcgagcag ctcgaacagc tttgcctggt cttcgagatt
     3361 gggacacgcg ggatagccga aactaaaacg cgaaccttga tagctttgat gaaacaactt
     3421 cgttacttcc ttcgcgtctt gttcggcaat tcccagttct tcgcgaatac gtttatgcca
     3481 catttcagcc agcgcctcgg cgctctcaac gcttaggccg tggaagtaaa gatagtcggc
     3541 atagttgtcg gccttgaata attcctgcgc gtattcgctc gcgcgccggc caacagtcac
     3601 aagatgaaaa gcaacgacat ctatcttccc cgactcctgg gatgcaaaga aatccgcgag
     3661 gcataggtgc ttacccgcag gttgccgcgg gaagtcgaat cgggcgcgct ccgtctgctc
     3721 gtcttcgtga tagacgacta gatcgttgcc cgatgactgg cacggaaagt atccatagac
     3781 gacgcgcggc gttagcagtt cctcgcgctt gcaacgcgcc ttcaactcct cataaatcgg
     3841 acgcaccgta tcccgcacca acgcctggta ctggtccgcg ggtgtgcgtg cctgcttgaa
     3901 ctgccactga cctttgaaca acgcggtttc gttgacgaaa gcaaagacgt cgtccagtgg
     3961 agcatcggcc accacacgcg agccaaagaa cggcgcgttt ggaattggca cgtcagcgcg
     4021 cacctctgaa cgagtggtat gagtcgtgtc gccggaaatt ctcagcgatc cgcgaggctt
     4081 gacaggcttg cgaatgccga gcttggcttc ctcgcccacc atgtcttcca cgtcttccgc
     4141 gtcattgtct gcgccaccgg ctgctgccgc cttcgccgat tcgttcttca tttcgccttc
     4201 gccgttagca ccactcacca gcctatccat ggtgtgcaga ccctcaaacg cgtcgcgcgc
     4261 gtaatagagt cgaccctgat agatcgattt gagatcgtca tcaacgtact tccgcgtaag
     4321 ggctgcgccg ccgagcacga ccggcacggt aatgccgcgc tcgttcatga gctcgagatt
     4381 gtctttcatt acgagcgttg atttaacgag caatccgctc atgccaatgg cgtctgcttt
     4441 gtgttcttcg tgcgccttca gaatgttgtc gatcgtctgc ttgataccga gattaacgac
     4501 cttataaccg ttgttcgtca ggattatgtc gacgagattc ttgccgatgt cgtgaacgtc
     4561 gcctttgaca gtcgccagaa ccattgtgcc tttggccgtg gcgccgccct tcttttccat
     4621 gaacggctcg aggaaacgca cggccgcctt catggcttcg gctgactgca agacgaaagg
     4681 taactgcatc tggccgttgc cgaaaagatc gcccaccacc ttcatgcctt cgagcaggat
     4741 gttgttgatg atgtcgagcg cgggatattt ttccagagca gtcttcaact cgccttcgag
     4801 gccaatcttc tcaccgtcaa tgatgtgatt cttcaaacgc tcttctacag tctcgccctt
     4861 cgaagccttc ttggcgctct tagctttgac attctcgaag agcgtggtga actgcgtaag
     4921 tggatcgtag gtgcagactt ctccgtcaaa ctgccgccgg tcatagatca aatcgcgcgc
     4981 aaccttcagc tcctgttcgc cgatgcgatt caaaggctcg attttgctgg cgttgacgat
     5041 cgcggcatcg aggccggct
//
LOCUS       DASZZE010000380         2277 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_272887, whole genome shotgun sequence.
ACCESSION   DASZZE010000380 DASZZE010000000
VERSION     DASZZE010000380.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2277)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2277)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2277
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_272887"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(20..514)
                     /locus_tag="VHD88_07355"
     CDS             complement(20..514)
                     /locus_tag="VHD88_07355"
                     /inference="COORDINATES: protein motif:HMM:NF015863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HVS21648.1"
                     /translation="MRSLIYRTHIWLGLIVAIPVFAWASSGLLYAWPSAVEGGKIESI
                     DATRLRVSPSEAMAKANEFAGKKLPTTALTLLMRDERPVYQAIGGMGADSLLIDAENG
                     TVIKTPPPGVLTRYFRQAHFYFFAGKWQVPLLLGFSALAGISALSGLYLNLTLWFGKL
                     FRRS"
     gene            complement(529..1947)
                     /locus_tag="VHD88_07360"
     CDS             complement(529..1947)
                     /locus_tag="VHD88_07360"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HVS21649.1"
                     /translation="MKHFPRLLLALCCCLFAAQSTWAQSGRVKDANTNLSSDEAHKTA
                     EAKRTETIDSRDAVQLYDEADNYAQKKFDDFEKRHMPFDARLADKIKQEQRDLAARYA
                     VVLTARKPQGKDVYYLGMLYNLARNFDAAYEVMRHFLTENSNATGEPAQNARAVIVIQ
                     AAKKDLLQEAESRLAEYAKNQPQVAEDRYNLESWMVTVYFKLKDYERAQPHAREMFNT
                     AKLVAKKKDPFERDKMLSEAVTLLSEADLKLKRKDEAIAAAQELRQLALALPSGNLYK
                     LALRRLLAIAPDIDLFKSFNDVAASTPALRDIVADEWIDQAPVKLANLRGRVVLLDFW
                     ATWCDPCRVTFPRLQKWHESYKDKGLVILGVTNFFGHAEGKQLTQPQEVAYLRDFKKR
                     FHIPYGFAVADSSENDHNYAVSSIPTSFLIDRRGVVRLISVGSSDEEAAMLNKMIKKL
                     IEEPAEASETETGRNGDSVKHP"
     gene            2076..>2277
                     /locus_tag="VHD88_07365"
     CDS             2076..>2277
                     /locus_tag="VHD88_07365"
                     /inference="COORDINATES: protein motif:HMM:NF012407.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate/isopropylmalate family dehydrogenase"
                     /protein_id="HVS21650.1"
                     /translation="MHRITLIPGDGIGPEVASAVVRIIEASGAQIEWETHLAGQQALD
                     KFGKTLPEELIESIKRNKIGLKG"
BASE COUNT          480 a          691 c          584 g          522 t
ORIGIN      
        1 cgattgatac gtgcattgct taactgcgcc tgaacagttt cccaaaccac agcgtcaagt
       61 tcaaatagag ccccgacaac gctgagatgc cggcgagcgc cgaaaacccc agaagcagcg
      121 gaacctgcca ctttcccgca aagaaataaa agtgcgcctg ccgaaagtaa cgcgtcaaca
      181 ctccgggtgg cggcgtcttg atcaccgtcc cgttctcggc gtcaatcagc agcgaatccg
      241 cgcccatgcc accgatcgcc tgatagaccg gacgctcgtc gcgcatcaag agcgtcagcg
      301 ccgtcgtcgg caacttcttc cccgcaaact cattcgcttt cgccatggct tctgacggtg
      361 agacgcgcag gcgcgttgca tcgatgcttt caatcttgcc gccttcgaca gcgctgggcc
      421 acgcgtacaa aaggccgctc gaagcccacg cgaaaacggg aatggcgacg atcaatccca
      481 gccagatgtg tgtgcggtag attaaggagc gcattctttc aaacgttgct acgggtgctt
      541 caccgaatct ccgtttcgcc ccgtctccgt ttcgctggcc tcggccggct cttcgatcag
      601 cttcttgatc atcttgttca gcatcgcagc ttcctcgtcg ctcgatccga cgctaataag
      661 tcgcacgacg ccacgccgat cgattagaaa gctggtcggg atcgaagaaa ccgcgtagtt
      721 gtgatcgttc tcgcttgagt ccgctaccgc aaaaccgtac gggatatgaa acctcttctt
      781 gaaatcgcgc aagtaagcaa cctcctgcgg ttgcgttaac tgcttccctt cggcgtgtcc
      841 gaaaaagttt gtcacgccga gaattaccag gcctttatct ttatagctct cgtgccattt
      901 ttgcagtcgc ggaaacgtca cacgacacgg gtcgcaccac gtcgcccaga aatccaatag
      961 cacgacgcgc ccgcgcaaat tcgcgagttt cactggcgcc tgatcgatcc attcgtcggc
     1021 cacgatgtcc cgcagcgccg gcgttgaggc cgccacgtcg ttgaatgatt tgaacaaatc
     1081 gatgtcgggc gcgatcgcca ataagcgtcg cagagccagc ttgtatagat tgccagacgg
     1141 caaagctagc gcgagttggc gcagctcctg ggcagccgcg atcgcttcat cctttctctt
     1201 cagcttcaga tcggcttctg agagcagcgt caccgcctcg ctcaacatct tgtcgcgctc
     1261 aaacggatct tttttcttcg ctacgagttt ggcggtattg aacatttccc gagcatgcgg
     1321 ctgcgcgcgt tcgtagtctt tcaatttgaa ataaaccgtg accatccagc tttcaagatt
     1381 gtaacgatcc tccgcgactt gcggttgatt cttcgcgtat tcagccagac ggctttcggc
     1441 ctcctgcaac aaatccttct ttgctgcttg aatcacgatg accgcgcgcg cattctgcgc
     1501 cggctcgccc gtcgcatttg aattctcagt tagaaagtgc cgcatcactt catacgccgc
     1561 gtcgaaattc cgcgccaggt tgtacagcat gccgagatag tagacgtctt tgccctgcgg
     1621 cttccgcgcc gtcaacacaa cggcgtagcg cgcggccaga tcgcgctgct cctgcttgat
     1681 tttgtccgcc agccgcgcat cgaagggcat gtgccgcttc tcaaagtcgt caaacttttt
     1741 ttgcgcgtag ttgtcggcct cgtcgtagag ttgcacggcg tcgcgcgagt ctattgtttc
     1801 cgtgcgcttc gcttccgcag tcttgtgggc ttcgtcgctg ctaaggttcg tattcgcgtc
     1861 tttcacccga ccggattgcg cccatgtcga ctgcgcagcg aaaaggcagc aacacaaagc
     1921 cagcagcaag cgtggaaaat gtttcattag caattcggaa gcaactcttg acaacgcggc
     1981 caacggaaga ctgcgagcat gttaggacac ggtgactgca ctgtcaaaat gctcagattg
     2041 actactgtct actgactgct gtctactgtc tttttatgca tcgtatcaca ctgattccgg
     2101 gcgatggcat cggtcccgaa gtcgcctcag ccgtcgtgcg catcatcgaa gcttccggcg
     2161 cgcagatcga atgggagacg catctcgctg gccagcaagc cctcgacaag tttggcaaga
     2221 cgctgcccga agaactaatc gagtcaatca agcgcaacaa gatcgggcta aaaggtc
//
LOCUS       DASZZE010000381         2115 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_79553, whole genome shotgun sequence.
ACCESSION   DASZZE010000381 DASZZE010000000
VERSION     DASZZE010000381.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2115)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2115)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2115
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79553"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..966
                     /locus_tag="VHD88_07370"
     CDS             <1..966
                     /locus_tag="VHD88_07370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21651.1"
                     /translation="ETDARALVDDLMAVKLRSKSGAACWGYNFDWQSRSFFAPRGTPT
                     VVPTAFAARALVEASQAFGDESFLQAARSACDFIVSDLSRSHETEDEVCFSYSPLDRT
                     RVFNASLLAGETLATVGAVANESELINCGIRAARYVIQRQRDDGSWAYGADDYQSWAD
                     NFHTAFVPASLSRIIESVASAVDANGERDLTAETQSAQRVRREFISQAEAALRRGYDF
                     WRERFFLANGWPKYFPDRLYPADAHSAGAAIVALVELSWLDSNAPDFAEKIAHWTIEN
                     LRDPQGFFYYQRRRFHTVRTPYMRWSEAWMMYALSRLLETMNYER"
     gene            1031..2047
                     /locus_tag="VHD88_07375"
     CDS             1031..2047
                     /locus_tag="VHD88_07375"
                     /inference="COORDINATES: protein motif:HMM:NF015940.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF354 domain-containing protein"
                     /protein_id="HVS21652.1"
                     /translation="MRIWIDLANSPHVPFFRALIPEFVAREHQVEITARDFAQTVELA
                     MKAGMMPYVIGGHGGGSITSKAGNLIGRAAALRKWARDRGFDLTVSHNSYAQIAAAAA
                     LGIKTVTLMDYEHQPANHLAFRLASRVIVPRAFPAAELRRYGASMRKVKRYDGTKEDV
                     YLADFTPDPAFPETLRGLGIASEDVLVVVRPPAREALYHRFENELFDELLSRLSSRND
                     VRIVLLPRSNAQRADYEARNWSNMIMPQYALDGANLIAAADLVISAGGTMNREAAALG
                     VPAASIYAGKWAEIDEELVREGRLRRLASHDDIESLTIQKKSRTNPREARGVRAEITR
                     LILE"
BASE COUNT          414 a          568 c          646 g          487 t
ORIGIN      
        1 gagacagacg cgcgtgcttt agtcgacgat ttgatggcgg tgaaacttag atcgaagagc
       61 ggcgcggcgt gttggggtta caacttcgac tggcaatcgc gttcgttctt cgcgccgcgc
      121 ggcacgccga cggtcgtgcc cacagctttc gcggcgcggg ctttggtcga agcgtcgcag
      181 gcgttcggag atgaatcatt tctgcaagcc gcgcgcagtg cctgcgattt catcgtgagc
      241 gatctcagtc gcagccacga aaccgaagac gaagtctgtt tcagttattc gccgctcgat
      301 cgtacgcgcg tgttcaatgc gagtttgctg gcgggcgaaa cactggcgac tgtgggcgcg
      361 gtcgcgaatg aatcagaatt gatcaattgc ggaatccgcg cggcgcgtta cgtcattcag
      421 cgtcaacgcg acgacggctc gtgggcgtac ggcgctgacg actaccaatc atgggctgac
      481 aatttccata cggcgtttgt cccggcgagt ctgtcgcgga tcattgagag tgtggcttcc
      541 gctgtcgatg ccaatggcga acgcgatctc accgcagaga cgcagagcgc gcagagggtg
      601 cgcagagagt tcatttctca agccgaagct gcattgcgtc gtggctatga tttctggcgc
      661 gagcgcttct ttctcgcgaa tggctggccg aagtattttc cggatcggct ctatcccgcg
      721 gacgcgcact ctgctggcgc ggcgattgtt gcgctggttg aattgagttg gcttgatagc
      781 aacgcccccg actttgccga gaagatcgcg cattggacca tcgaaaatct gcgcgatccg
      841 caaggtttct tctattatca gcgccggcgt tttcatacag tgcgcactcc gtatatgcgc
      901 tggtcggaag cttggatgat gtatgcgttg tcgcgacttc tcgaaacgat gaactatgaa
      961 cgatgaacga tgaacgcgga agtattcgct ttgttcatca ttcagcgttc atacttcatc
     1021 gttttagctt atgcgaatct ggattgactt agctaactcg ccgcacgtgc cgttttttcg
     1081 cgctctgatt ccagagtttg tcgcgcgtga gcaccaggtt gaaatcacgg cgcgcgattt
     1141 tgcgcagacg gttgaactgg caatgaaagc cggaatgatg ccgtacgtca tcggcgggca
     1201 cggtggggga tcaatcacca gcaaagcggg aaacttgatc ggccgcgccg cggcgctgcg
     1261 caagtgggcg cgcgatcgcg gcttcgatct caccgtcagt cataactctt acgcgcagat
     1321 tgccgcggcc gcggcgctcg gaattaaaac cgtgacgctg atggattacg agcatcagcc
     1381 cgctaatcat ctcgcgtttc gtttagcttc gcgtgtgatc gtgccgcgcg cgtttcctgc
     1441 tgcagagttg cgtcgctatg gcgcgtcgat gcgcaaggtt aagcgttacg acggcacaaa
     1501 agaggatgtt tatctcgcgg acttcacgcc cgatcccgcg ttcccggaaa cgctgcgcgg
     1561 gcttggcatc gcgagcgaag atgtgctggt cgtcgtgagg ccgccggcgc gcgaagctct
     1621 gtatcatcgt ttcgagaatg aattattcga cgagctgctt tcccgtttga gttctcgcaa
     1681 tgatgtaagg atcgtcttgc taccacgttc taatgcgcag cgcgctgatt acgaagcacg
     1741 caactggtcc aacatgatca tgccgcaata cgcgctcgac ggcgcgaatt tgatcgccgc
     1801 tgccgatctc gtaattagcg ccggcggcac aatgaatcgc gaagccgccg cgctgggcgt
     1861 gcccgccgct agcatctatg cgggtaagtg ggccgagatt gatgaagagt tggtgcgcga
     1921 aggacgattg cggcgccttg cttcgcacga cgacattgag tcgttgacga tccagaagaa
     1981 atcacgcacc aatcctcgcg aggcgagagg tgtgcgcgcg gaaatcactc ggttgatttt
     2041 agaatgacgt gaatcgtccg cggcttcgcc gcctgatgtg cggaaggcct gtggccttcc
     2101 gtgataatga tctaa
//
LOCUS       DASZZE010000382         4035 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_141901, whole genome shotgun sequence.
ACCESSION   DASZZE010000382 DASZZE010000000
VERSION     DASZZE010000382.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4035
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_141901"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..581)
                     /locus_tag="VHD88_07380"
     CDS             complement(<1..581)
                     /locus_tag="VHD88_07380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21653.1"
                     /translation="MQLFDPKNPNEKKKMIAAAVLGVGAIVVLGYVFFGGSSTKPATN
                     LNAKTVPSTTPARIARDSASVDNPVDDPSVFQPIKFDGTVSPVSDANRNIFAYYEPPP
                     PLKVVIPPTPTPTPVPPVTLASLAPSNVYARTADFTLEVTGEKFTPAVRINLDGRELP
                     TRFINAQQVGTTVPASLISNPGARMVMLRSSDG"
     gene            complement(667..1506)
                     /locus_tag="VHD88_07385"
     CDS             complement(667..1506)
                     /locus_tag="VHD88_07385"
                     /inference="COORDINATES: protein motif:HMM:NF022201.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GspMb/PilO family protein"
                     /protein_id="HVS21654.1"
                     /translation="MSQEQPMQSRALAGRRQIRGRFDQLKRSPGLNVIGVPELVGLAG
                     AALLALITIFAYFYFLVPAHSRLSSTQLDRDLLQGQVRASEGNLSKDTNTQKAVDEIK
                     ASLEDFEGNWLTAPGTGRMSLYSELNSLIRSNGLRNTSGPSYSTLAPAGTKSQTPAAN
                     ASQQSKAKWQTIYPGIAVSVTVEGPYAKVRHFVRDIETSRQFLIINSVELESASQSGA
                     IAESSTVPGPPVALRPSARAGRAAAPLSSTQPPVPRGALVSLRLDMATYFRLNETDNS
                     AKP"
     gene            complement(1503..2141)
                     /locus_tag="VHD88_07390"
     CDS             complement(1503..2141)
                     /locus_tag="VHD88_07390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21655.1"
                     /translation="MTTRLNLSSNPFRNRALPWTVATVVALASIISLVFIAKSTVQTN
                     AQVETAQRDVSDLRKQSDALKRRADEIKIALTPEQQRTLKSAHTLVDRKRFSWARLFV
                     DLEAALPGSVRVARIVVKEVSTQGDRTGANLDLTVVSKNPATITQMIEDMQREGIFQA
                     ELINQNLQRGKGESGAEYEMNVHYVPRAGAPIETANRNERPVDTAGEGSRTR"
     gene            complement(2293..>4035)
                     /locus_tag="VHD88_07395"
     CDS             complement(2293..>4035)
                     /locus_tag="VHD88_07395"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HVS21656.1"
                     /translation="LAMVSGDAATAAQHFGRSVSIFDLLGDRYRSARAHYELGRAYAI
                     AQPERAAEHLSRAVNIFRELGARLDLGRAEEAAAALDQTAPQQLRKRETIVQLLTLRL
                     AEAVASRELLLRELAAVVRQETNSRRVIIIEPDEGDRQRVVIAHGCTKKESEAWADEF
                     ATLKKDTQREAFAKKHNAAVVGLKSSNAPPATLLISPRDRAELPGGLSLDPLLRIVEL
                     GMEVCALRVRAHAGQGAEEASTLAGASLMPGFIHSSPAMTRLVEEVHKIRSSDVTVLV
                     TGESGTGKELVARAIHALSSRRDKVFVPFNCTAVPKELSEGYLFGYRRGAFTGAVKDS
                     AGVIRTAAGGTLFLDEVGDLSLDVQPKLLRFLQEGEIQPLGEQRPMKVDVRIIAATNS
                     DLEEMVAQGRFREDLYYRLNVIRLRVPPLRERRSEVPTMVNYYTNHYSAKFGRRDIEI
                     TPQAVDLLMVAEWPGNVRQLCNEIQRVIARAEDGAIITAEQLSPELRHMGAPVTPPGT
                     VTPIGTGAAGPSVTVPLQDITLADALAEVERRMIAEALRKHNGNISRAARELGLTRRG
                     LYLKLERHAMSASA"
BASE COUNT          803 a         1170 c         1196 g          866 t
ORIGIN      
        1 ttgccatcgc tgctccgcag catcaccatg cgtgcgcctg gattcgagat gagcgaggca
       61 gggaccgtgg tcccaacttg ctgcgcattg atgaagcgcg ttggcaactc gcgtccgtcc
      121 aggttgatgc gaaccgccgg cgtgaacttt tcgcctgtga cttcaagagt gaaatccgct
      181 gtgcgcgcat agacgtttga cggcgccagc gaagcaagag tcactggcgg aaccggcgtc
      241 ggcgttggag tcggaggtat aaccaccttc aggggaggtg gcggttcgta gtaagcgaag
      301 atgttgcggt ttgcatccga aaccggagac acggtgccgt cgaatttaat cggctggaaa
      361 acagacggat cgtcaactgg attatcgaca gacgccgaat ctcttgcgat ccttgctggt
      421 gtcgttgacg ggaccgtctt tgcatttagg ttcgttgcgg gcttcgttga gctgccgcca
      481 aagaatacat agccgagcac gacgatcgcg cctacgccga gcacggctgc cgcaatcatc
      541 ttcttttttt cgttcggatt tttcggatca aaaagctgca ttgaaattca attatctcta
      601 tcttacacgc acgatcaagc aagcggttct gctaacttcg cgtctcccag ccatcgcaaa
      661 gatcagttaa ggcttcgcgc tgttatcagt ttcgttcagc cggaaatacg ttgccatatc
      721 cagacgcaag ctcacgagcg caccgcgtgg caccggcggt tgagtgctcg acagtggggc
      781 ggccgctctt ccggcgcgag ccgacgggcg cagcgcaacc ggcggacccg gcacggtcga
      841 tgactccgcg attgcgcctg actgagacgc gctttcaagc tcgacgctgt taatgatcag
      901 aaactgacga ctggtttcga tgtcgcgcac gaagtgacgc acttttgcat acggaccttc
      961 gacggttacg ctaacggcga tgccgggata gatggtttgc cattttgctt tgctctgttg
     1021 ggacgcgttc gcggccggcg tctgactctt cgtgcccgcc ggcgcgagcg ttgagtaact
     1081 tggcccggaa gtattgcgca gtccgttgct gcggatcagg ctgttgagtt cagagtaaag
     1141 ggacatgcgg ccggtgccgg gggccgtcag ccagttgccc tcaaaatctt ccaggctcgc
     1201 tttgatctca tcgacggctt tttgcgtgtt cgtgtccttg ctgagattcc cttcagacgc
     1261 gcgcacttga ccctgcaaga gatctcgatc gagttgggtc gagctcagac gcgaatgcgc
     1321 cgggacaaga aaatagaaat aagcaaagat cgtgattagc gcgagcagag cagcgccggc
     1381 gagaccgact agttccggga ctccgataac atttagtcct ggcgagcgct tcagttgatc
     1441 gaagcgcccg cgaatctgcc ggcggccagc cagcgcgcga ctttgcatcg gttgttcctg
     1501 actcatcgcg tcctgcttcc ctcgcccgca gtgtctaccg ggcgctcatt tcgattcgcg
     1561 gtttcgattg gcgcgccggc gcgcggcacg taatgcacat tcatttcata ttcggctccg
     1621 ctctcgcctt tgccgcgttg caggttctgg ttaatcaatt ccgcctgaaa gattccttcg
     1681 cgctgcatgt cttcgatcat ctgagtgatc gtcgccggat tcttgctgac gaccgttaga
     1741 tccagattgg cgcctgtacg atcgccctgc gtactcactt ctttgacgac gatgcgcgcg
     1801 acgcgcacgc tgcccggcaa cgcggcctcc agatcaacaa acaaacgcgc ccatgaaaat
     1861 cgtttgcgat cgacgagcgt gtgcgcagac tttagagtgc gttgctgctc cggcgtgagc
     1921 gcgattttga tttcgtcggc acgccgtttc agcgcgtccg attgctttcg caaatctgaa
     1981 acgtcacgtt gagccgtctc aacttgtgcg ttagtttgga cggtggactt ggcaatgaat
     2041 accagagaga tgatcgaagc gagcgcgaca actgtcgcga ccgtccacgg cagcgcgcga
     2101 ttgcgaaaag gattgctcga gagatttagc ctggtagtca tgatcgcctt gatactcgcg
     2161 gaaatactaa gccgttcacc aaaaagcata ccgcccgttg caaacgagcg caacggcaga
     2221 cgcggcgcaa cggacttaca cgctcgatag tcgatgaaag ttgcggaaac gacaggagaa
     2281 agaaggcgcg gattaggcgc tggcgctcat ggcgtggcgc tcgagcttca ggtacagacc
     2341 acggcgggtc aagccgagtt cgcgcgccgc gcgcgagatg ttgccgttgt gcttgcgcaa
     2401 agcctccgcg atcatgcggc gctcgacttc ggccagggcg tcggccagcg tgatgtcttg
     2461 aagtggcaca gtaaccgacg ggccggcagc tccagttcca atcggtgtga ctgtaccagg
     2521 cggggtaact ggcgcgccca tgtgacgcag ctcaggtgaa agctgttccg ccgtaatgat
     2581 cgcgccgtcc tcagcgcgcg caatgacgcg ttgaatttcg ttgcagagct ggcgcacgtt
     2641 gcccggccat tcggcgacca tcagcagatc gactgcttgc ggcgtgattt caatgtcacg
     2701 acggccgaat tttgctgaat agtgattggt gtagtagttc accatcgtgg gaacctcaga
     2761 ccggcgctcg cgcaaaggcg gcacgcgcag gcgaatcacg ttcagtcgat agtaaaggtc
     2821 ttcacgaaag cgaccctgcg cgaccatttc ttcgagatcg gagttggttg ccgcgatgat
     2881 gcgcacatcc actttcatcg gtcgctgttc accgagtggt tgaatctcgc cttcctgcaa
     2941 gaagcgcaag agcttcggct gaacgtcgag cgacagatcg ccaacttcgt caagaaacag
     3001 tgtgccgccg gcagccgtgc ggatcacacc ggcggaatct ttgaccgctc ctgtgaatgc
     3061 gccgcgccga taaccgaaaa gatagccttc cgaaagttcc ttcggtaccg ctgtgcagtt
     3121 gaatggcaca aaaactttat cgcggcgtga cgaaagagca tgaatcgcgc gcgctaccag
     3181 ctctttgccg gtgccggatt cgccggtcac cagcacggtc acgtccgacg aacgaatctt
     3241 gtgcacctct tcgaccaggc gcgtcatcgc cgggctggaa tgaatgaatc ccggcatgag
     3301 gctcgctccg gccagcgtgc ttgcttcctc cgcgccttgt ccggcgtgag cgcgaacccg
     3361 caaggcgcaa acttccattc ccagctcgac aatgcgcagc aaaggatcaa gcgaaagtcc
     3421 gccgggaagc tcagcgcgat cgcgcggcga aatcaaaagc gtagccggcg gagcgttgct
     3481 tgatttcaga ccgacgacgg ccgcgttgtg tttcttagca aaggcttcgc gctgggtgtc
     3541 tttcttgagc gtcgcgaatt catctgccca tgcttcgctt tccttcttag tgcaaccgtg
     3601 ggcgatcact acgcgctggc ggtcgccttc gtcgggctcg atgataatca cgcggcgaga
     3661 gttggtttcc tggcgaacga ccgcggccaa ttcgcgcaac agtaactcac gcgacgccac
     3721 agcttcggcc agacgcaaag tcagaagctg aactattgtt tcacgctttc gcagttgctg
     3781 cggcgcggtc tgatcgagtg cggctgcagc ctcttctgct cgacccaggt ccaggcgcgc
     3841 gcccagctcg cgaaagatat tcactgcgcg cgagagatgt tccgccgcgc gttccggttg
     3901 agcgatggca taagcgcggc ccagttcgta gtgcgcgcgc gcgctgcgat aacgatcgcc
     3961 cagcagatcg aagatcgaaa cgctgcggcc aaagtgttgc gcggccgtcg ccgcatcgcc
     4021 gctaaccatc gccag
//
LOCUS       DASZZE010000383         2461 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_128410, whole genome shotgun sequence.
ACCESSION   DASZZE010000383 DASZZE010000000
VERSION     DASZZE010000383.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2461)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2461)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2461
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128410"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            365..763
                     /locus_tag="VHD88_07400"
     CDS             365..763
                     /locus_tag="VHD88_07400"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HVS21657.1"
                     /translation="MSGESLERYFRVIHGPRGSRPSGRLWCPAADVYRTHDGWIVKVD
                     LAGIKADDVEISIDGPLLHISGLRRDSICGEGVSHYQLEITYSRFEKTIQFPRSIEHA
                     SVLRDYHDGLLILRLHEEEEGVKGKARAAG"
     gene            816..>2461
                     /locus_tag="VHD88_07405"
     CDS             816..>2461
                     /locus_tag="VHD88_07405"
                     /inference="COORDINATES: protein motif:HMM:NF014269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LON peptidase substrate-binding
                     domain-containing protein"
                     /protein_id="HVS21658.1"
                     /translation="MAEAKDKSTEQPKDTQAPAPKPAVPFEIPVLPLTNTTLFPETMV
                     PLAAGRPASVAAVEAALAGEEKLLACISVRPEKPEDQDTKPADLFNVGTLVMIKRMER
                     VEDTLHLIVQGIDRIRVLDWAQEAPFLRARVEILPELGTKDTEKVEAAKRNVQSLIQQ
                     ALAYLPQVPPEVRLVVLGADDPVKLAYFLGSILNLGVEHEQQMLEANSADELLHLAHD
                     FLAREVEIIRLRSKIANEAQTEMDKAQRDYVLRQQMKAIQKELGEDESGEQAEATQLR
                     QRLEKADLPDEVRKEATRELGRMEKLPAAAPDYHVIRTYLDFILELPWRKSSEDRLDL
                     NEAQKVLDEDHYGLEDVKERILEFLAVRKLRADAKSPILCFVGAPGVGKTSLGRSISR
                     AMGRDFERISLGGIRDEAELRGHRRTYVGAMPGRVIQSIRRAGVNNPVMMLDEIDKLG
                     ADYRGDPAAALLEILDPEQNNTFTDHYLDLPFDLSKVFFIGTANQLGPIPQPLRDRME
                     VIHLAGYSDREKLQIAKQYLAPRQIRENGLTPEQFEITDDA"
BASE COUNT          574 a          680 c          692 g          515 t
ORIGIN      
        1 agtttacgaa atctattttg ccacgcatcg aatttcagca attgatctgc gccaaccata
       61 accacgtcga tccgatcgat gtgggccgcc aaatgagcgc aggcaactga gcaacaaaag
      121 tgttacctat gtctatggac acctgttacc catctctccg gtctgtacac tgggagaggg
      181 ttaggagagg gcctgagtat cgagcacgcc caatcatcag ctaagccctc ttccccgacc
      241 cttctcccaa tgggagaagg gagaatcaac tcactcctaa ctgacattcg catgcgaaac
      301 ctttataatt taatcattcg attcccctga aaccctcgga tgatttctga acggaactgt
      361 tcttatgtcc ggcgaatcgc ttgagcgtta ctttcgcgta atccatggcc cgcggggaag
      421 ccggccttcg ggacgcttgt ggtgtccggc ggcggatgtc tatcgcacgc acgacggctg
      481 gatcgtgaag gtcgatctcg cgggcataaa ggctgacgac gtcgagatca gtattgacgg
      541 cccactgctg cacatcagcg ggctgcgccg cgacagcatc tgcggcgaag gcgtttcgca
      601 ctatcaactc gaaatcactt acagccgctt cgaaaagacg attcagtttc ctcgctcgat
      661 cgagcacgct tccgtactcc gtgactatca cgatggtttg ctcattctgc gcctgcatga
      721 agaagaagag ggcgtgaaag gtaaggcgcg cgccgcgggc tgaaaatcgt tgagcctcca
      781 tccgataact aaacctattt tcatttttga agacgatggc tgaagcgaaa gacaaatcca
      841 ccgagcaacc aaaagacacg caggcccctg cgcccaagcc cgcagtgccg ttcgagattc
      901 cggtgttgcc gctgacaaac acaacgctgt tcccggaaac gatggtgccg ttggctgccg
      961 gtcgtcctgc gtcagttgcc gccgtggaag ccgcgctcgc cggtgaagaa aaactgctcg
     1021 cctgcatcag cgtgcggcca gagaagcccg aagatcaaga cacaaagccc gcggacctct
     1081 ttaacgtggg gacactcgtc atgatcaaaa ggatggagcg agtcgaagac acgctgcatc
     1141 tgatcgttca gggaatagat cgaatccgcg ttttggattg ggcacaggaa gcgccgtttt
     1201 tgcgcgcgcg cgtcgagatt cttccggaac tgggaaccaa agacactgag aaagtcgagg
     1261 cagccaagcg caacgtgcag tcgttaattc aacaagcgct ggcttacttg ccgcaagtgc
     1321 cgcccgaagt tcgtctggtc gtgcttggcg ctgacgatcc ggtgaagctc gcatattttc
     1381 ttggttcgat tctgaatctc ggcgttgagc acgagcagca gatgctcgaa gccaactctg
     1441 ccgatgagtt gctgcatctg gcacacgatt tcctcgcgcg tgaagtcgag atcattcgtc
     1501 tgcgctcgaa gattgccaac gaagcgcaga ccgaaatgga caaggcgcag cgcgattatg
     1561 ttttgcgtca gcagatgaag gcgatccaga aagagttggg cgaagacgaa agtggcgagc
     1621 aggccgaagc gacccagttg cgccagcgac ttgagaaggc cgatctacct gatgaagtcc
     1681 gaaaggaagc cacgcgcgaa ttgggccgca tggagaagct tcccgccgct gcgcctgatt
     1741 atcacgtgat tcgcacgtat ctcgatttca ttttggaatt gccgtggcgc aagtcttccg
     1801 aagaccggct tgatttgaac gaagcgcaaa aggttttgga tgaagatcac tacgggctgg
     1861 aagacgtcaa agagcgcatt ctggaattcc tcgccgtcag aaaacttcgt gccgacgcaa
     1921 agagtcccat actttgtttt gtgggcgcgc ccggcgtcgg caagacttca cttggtcgat
     1981 cgatttcgcg cgcgatgggc cgcgactttg agcgcatcag tctcggcggg attcgcgacg
     2041 aagctgaact gcgcggccat cggcgcactt acgtcggcgc gatgcccggc cgcgtcattc
     2101 aatcgattcg ccgcgccggc gtgaacaatc cggtgatgat gctcgacgaa atcgacaagc
     2161 tgggcgccga ttatcgcggc gacccggcgg cggctttgct cgaaattctc gatccggaac
     2221 agaacaacac gttcacggat cactatctcg atctgccttt cgacttgtcg aaagttttct
     2281 ttatcggcac ggcgaatcag cttggaccga ttccgcagcc gttgcgcgat cgtatggaag
     2341 tgatccacct tgccggctac agcgatcgcg agaagctgca aatagcgaag cagtatctgg
     2401 cgccgcgaca aatacgcgag aacggactaa cgcccgagca gtttgagatc acggatgacg
     2461 c
//
LOCUS       DASZZE010000384         4960 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_43884, whole genome shotgun sequence.
ACCESSION   DASZZE010000384 DASZZE010000000
VERSION     DASZZE010000384.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4960)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4960)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4960
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43884"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..514
                     /locus_tag="VHD88_07410"
     CDS             <1..514
                     /locus_tag="VHD88_07410"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HVS21659.1"
                     /translation="IERIEMIAEELKGDQRTGFDPPYTTANVGIVNGGTAKNVVAGEC
                     RFTLEWRPVPGQDADRVLNLVKRAIEDLRKQDSDFVCEIDAARADESFETRADSLLVQ
                     FLEQTSGNASGTVAFGTEAPSMIALGADALVFGPGDIRVAHRTGEFVPIDQLNECVSI
                     LRQAIERFCM"
     gene            705..2588
                     /locus_tag="VHD88_07415"
     CDS             705..2588
                     /locus_tag="VHD88_07415"
                     /inference="COORDINATES: protein motif:HMM:NF036516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21660.1"
                     /translation="MKQRLGSVLLAAVALILFQAQSIIAQTRSPITLSVDATEAPRKL
                     FHARMTMPVSPGPLTLVYPEWIPGEHGPTGPIINLAGLKITADGKTIAWRRDDVDMYA
                     FHLEVPAGTREIDVALDFLSPTFAGGFTAGASTTAHLAMVTWNQLLLYPAGSNISEVT
                     FKPNLTLPAGWKFGTALPVQREARSKIDFDTVSLERLVDSPVLAGEYFRVIQLATNPP
                     NEIDIGADAPADLELSQELTTTLKRIVSEATALFGATHYEHYHFLLTLSDHTAHFGLE
                     HHESNDSRVAERSLLDDALRDVSLGVLPHEFVHSWNGKFRRPAGLATPNYQEPMKGDL
                     LWVYEGLTQYLGNLLSARSGLWTTQQYRDHLAEIAADLDHKPGRMWRPLADTAIAAQI
                     LYGSPGEWNSLRRTVDFYDEGWLVWLDVDTTIRQLTNGRRSLDDFCKRFHGAPSSAPM
                     VKTYTFDDVVATLNDVAPNDWRNFLLTRLNSTDFHAPLGGIERGGWKLAYESKPNGFL
                     RDAEQVRKFTELGFSIGLRLQEDGTIADTIEGMAAAKAGLGPGMKLFAVNGKAYSADV
                     LRDAVKAAKSGGRIELLVDNEGQLETHKLEYREGEKYPALERDNSKADLLSQIIAPLS
                     WQR"
     gene            2909..4066
                     /locus_tag="VHD88_07420"
     CDS             2909..4066
                     /locus_tag="VHD88_07420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21661.1"
                     /translation="MTTAFSSTHAQSDNTPFPQATELQHGPPLTNQEFVALLYQLPAH
                     PAERDKLIDEIRKRGIAFPVTSGLLSLTATKSGNDTLLRHTLEEADRRRTNPVAASLP
                     PTTEGIELLEQTRKATLGAADKMPDYLVKQMITRSRAFGQTNNWSVYDRLSIAVSYRQ
                     TAGEQYKLLSVNGMPPSVDEREGSTYGDKLGGTTSSGEYVSMLSELFQPQTRADFQMA
                     DTDTLRGRRTIVYEFSVKKEFSHQTLKFQENINSAPIETIAGYRGRIWVDRETNRVLR
                     LEDISVEIPPDFPITAATSTIDYDWVTINEVEHLLPSRAIIELTSHVGARSEQTRNDI
                     LFRGYRKFGAEVKIIDIDEKDFPPDKSEEPEPSKPETPPALRPQPPKKPNP"
     gene            4323..>4960
                     /locus_tag="VHD88_07425"
     CDS             4323..>4960
                     /locus_tag="VHD88_07425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="YncE family protein"
                     /protein_id="HVS21662.1"
                     /translation="MIAAIFAAVTIFATAASAQTKPDKDYLAYVVSESADKIALIRFG
                     PNGARIDHQLETGDMPVDIDGPHGIVISPDRQFYYVSIAHGRPFGLIWKYSTKDDSVL
                     GKTTLGYFPATVDITPDGNFLFVVNFNLHGDMMPSSVSVVSTPTMTEVARIQTCTMPH
                     GSRLNPQGTKQYSACMMDDMLVEIDTRTLKVARHFIVTKGKEVGANGPPKVQT"
BASE COUNT         1131 a         1406 c         1393 g         1030 t
ORIGIN      
        1 gatcgaacgc atcgaaatga tcgccgaaga gctgaaaggc gatcagcgca ccggtttcga
       61 tccgccgtac acaaccgcga acgtcggaat agtcaacggc ggcacggcga agaacgtcgt
      121 cgccggcgag tgccgcttca cactcgaatg gcggcccgtt ccgggacaag acgccgatcg
      181 cgttctgaat ctggttaagc gagctatcga agatttgcgc aaacaagatt cagattttgt
      241 ttgcgagatt gacgccgcgc gcgcggatga gagttttgaa acgcgcgccg attcgctgtt
      301 ggttcaattt ctcgaacaaa catccggcaa cgcgtcgggc acggtggcct ttggcaccga
      361 agcgcccagc atgatcgctc tcggcgcgga cgcactcgtg tttggcccgg gcgacattcg
      421 cgtcgcgcac cgcacgggtg agtttgttcc catcgatcaa cttaacgagt gcgtcagcat
      481 tcttcgtcag gcaatcgaac ggttttgcat gtaacccgag tagttctcag cgtaacctct
      541 gcgacctctg cgttcgtggt gaatgaccgt gacagaagac tcaccgcaga gacgcagaga
      601 acgctgagaa accgcagaga acagcacgac tcgccgctga ctgttagacg ccgcgcaaat
      661 ccttcgcgta tcatgtctcg tcaaaacttg ttcggagaaa aaccatgaaa cagagacttg
      721 gttccgtact gctcgccgcc gtcgcgctca ttcttttcca ggcacaatcg atcattgcgc
      781 aaacgcgctc accaatcacg ctcagcgttg acgccacgga agcgccgcgc aaactttttc
      841 atgcgcgcat gacgatgccg gtgtcgcccg gaccgctgac gctggtttat cccgaatgga
      901 ttcccggcga gcatggacca accggaccaa tcataaatct tgccggttta aagatcaccg
      961 ctgatggaaa aacgatcgcg tggcggcgcg acgacgttga catgtacgcg ttccatctcg
     1021 aagtgccggc gggcacgaga gagatcgacg tagcgctcga ttttctttcg ccgacgtttg
     1081 ccggcggatt cacggcggga gcatcgacaa ctgcgcatct cgcgatggtt acgtggaacc
     1141 agttgctgct ctatcccgcc gggtcgaata tcagcgaagt tactttcaaa ccgaacctca
     1201 cgctgcccgc tggttggaag ttcggcaccg ctttgccggt gcagagagag gcaagaagca
     1261 agattgattt cgatactgtc tcgttggaga ggctcgtcga ttcgccagtg ctcgccggcg
     1321 aatactttcg cgtgattcag ctcgctacaa atccgccgaa cgaaattgat atcggggctg
     1381 acgcgcccgc cgatttggaa ctcagccagg aactgacgac gacgctgaag cggatcgttt
     1441 ccgaagcgac cgcgcttttc ggcgcgacgc actacgagca ctatcacttt ctgctgacgt
     1501 tgagcgatca caccgcacac tttggtcttg agcatcacga atcgaatgac agccgcgtgg
     1561 ccgagcgctc gctgctcgac gatgctttgc gcgacgtttc gctcggagtg ctgccgcacg
     1621 agtttgtgca ttcgtggaac ggaaaatttc gccggccggc gggactcgcg acgccgaatt
     1681 atcaggagcc gatgaagggc gatctgctct gggtttatga gggactaacg cagtatcttg
     1741 gcaacctctt gtcagcgcgc agcggtctgt ggaccacgca gcagtatcgc gatcatcttg
     1801 ctgagatcgc cgccgatctc gatcacaaac ctggacgaat gtggcggccg ctggccgaca
     1861 cggcgatcgc cgcgcagatt ctttacggct cgccgggcga atggaattca ctacgtcgca
     1921 ccgtggattt ctatgacgaa ggctggctgg tctggctcga cgttgacacg actattcggc
     1981 aattgacgaa tggccggcgc tcgctcgacg atttctgcaa acgctttcat ggcgcgccga
     2041 gctctgcgcc gatggttaag acctacacgt tcgatgacgt ggtcgcgacg ctgaacgatg
     2101 tggcgccgaa cgactggcgt aactttttgc tgacgcgcct taattcgaca gacttccacg
     2161 cgccgctggg cggcatcgaa cgtggcggat ggaaactggc ttacgagtca aagccaaacg
     2221 gctttttgcg agacgccgag caagtgcgca aattcaccga gctgggtttt tccatcgggc
     2281 tgcgtctgca agaagacgga acgatagcgg acacgatcga aggcatggct gcggcgaaag
     2341 ccggacttgg gccgggaatg aaactcttcg ccgtaaacgg caaagcgtat tcggcggacg
     2401 ttttgcgcga cgcagtgaaa gctgcgaaga gcggcggacg gatcgagctg ctggttgata
     2461 acgagggaca gcttgagact cacaagctgg aatatcgcga aggcgaaaaa tatcccgcgc
     2521 tcgagcgtga caattcgaag gcggatctgc tgtcgcagat cattgcgccg ttgtcgtggc
     2581 aacgctgagc agatttggaa tcacccattt ttgtgttcag aaagcaatca acaagcgtcg
     2641 aaggcgcggc atattagcgg catattaata gccccgggcg taagcccggg gatcaagtaa
     2701 gaaggagaat cacgagcccg cgaaacgggc gacagaggtt ttggcaaaca tgttcgcact
     2761 atctttctcg aaatcttcgc aggcagtatc gccccttcgg ggctcgcagg tatctttcaa
     2821 tcgatcattc cccgggctga cgcccggggc tatttccttc cgcccgcttt gcgggctgac
     2881 cgcccgatta ttgctcggcg cgttgttatt gactaccgca ttctcatcaa cgcacgctca
     2941 aagcgacaac acgcctttcc cgcaagcaac ggagttgcag cacggaccgc cgctcacgaa
     3001 tcaggagttc gtggcgctgc tttatcaact gcctgcacat ccggctgagc gcgacaagct
     3061 tatcgatgag atcagaaagc gcggcattgc ttttcccgta acgtcgggct tgctctcttt
     3121 gaccgcgacg aagagcggca acgacacgct gttgcgtcac actctggaag aagccgatcg
     3181 acgccgcacg aatccagtcg ccgcttctct gccgcccaca accgaaggaa ttgagttgct
     3241 cgaacaaact cgcaaagcaa cgctgggcgc ggcggacaag atgcctgact atcttgtgaa
     3301 gcaaatgatt actcgctcgc gcgcgttcgg tcagactaat aactggtcgg tgtacgatcg
     3361 actctcgatc gcggtgagct atcgtcagac cgcaggcgag cagtacaaac ttttgtccgt
     3421 taacggcatg ccaccgagcg tggacgagag agaaggatca acgtacggag acaagctcgg
     3481 cggcacaacc tcgtcgggcg agtacgtgtc gatgctttct gagttatttc agccacagac
     3541 acgcgccgac tttcaaatgg ctgacacgga cacgctgcgc ggtcgacgca cgatcgttta
     3601 tgagttttca gtgaagaagg agttctctca tcagacgctg aagttccagg agaacatcaa
     3661 ctctgctccg atcgagacga tcgccggcta tcgcgggcgc atctgggtcg atagggaaac
     3721 gaatcgcgtg ttgcgccttg aggacatctc ggttgagatt ccgccggact ttcccatcac
     3781 cgcggccacc agcacaatcg actacgattg ggtgacgatt aatgaggtcg agcatctgct
     3841 gccttcgcgc gcgatcattg aattgacgag tcacgtggga gcgcggagcg agcagacgcg
     3901 caacgacatt ctcttccgcg gctatcgcaa gtttggcgcg gaagttaaga tcatcgacat
     3961 cgacgaaaaa gattttccgc ccgacaaatc tgaagagccc gaaccgagca agccggaaac
     4021 tcctccagct ctcagaccgc aaccgccaaa gaaacctaac ccgtgacgaa gtgccaggga
     4081 ttgaagtccg cgaagcagac gatcggaaat agcccagcac ttcagtactg ggttagcgat
     4141 gggatatgaa accaaaagcc cgtgaaacgc acgacagaat tacctctttc agcatcagaa
     4201 tagcgcagca cttttctacc gtccgctgcg cggactgggt aagaagatcc atcttccttc
     4261 ccagcgataa atcgctgggc tattttcggt cgtccgcttc gcggacttta tttgttcgat
     4321 tcttgattgc cgctatcttt gccgcggtga cgattttcgc cactgcagca tccgcgcaaa
     4381 caaaacccga caaagactat ctcgcttacg tcgtttcgga atcggcggac aagatcgctt
     4441 tgattcgttt tggaccaaac ggcgcgcgca tcgatcatca actcgaaacc ggagatatgc
     4501 cggtcgatat cgacggcccg cacggcatcg tcatctcgcc tgatcggcag ttctactacg
     4561 tttcaatcgc gcacggccgt ccgtttggtt tgatctggaa atactcgacg aaagacgatt
     4621 cagttctcgg caaaacaacg ctcgggtatt ttcccgcgac cgttgacatc acacctgatg
     4681 gaaattttct cttcgtcgtg aatttcaatc tgcacggcga catgatgccg tcgtcggtct
     4741 cagtcgtctc gacgccgacg atgactgagg tcgcgcgcat tcaaacgtgc acgatgccgc
     4801 acggctcgcg tctgaatccg caaggcacga agcaatactc ggcgtgcatg atggacgaca
     4861 tgctcgtcga gatcgacacg cgaacattga aagtcgcgcg gcatttcata gtcaccaaag
     4921 gcaaagaagt cggcgcgaac ggcccgccga aagtgcaaac
//
LOCUS       DASZZE010000385         3411 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_273098, whole genome shotgun sequence.
ACCESSION   DASZZE010000385 DASZZE010000000
VERSION     DASZZE010000385.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3411)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3411)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3411
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_273098"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(322..1515)
                     /locus_tag="VHD88_07430"
     CDS             complement(322..1515)
                     /locus_tag="VHD88_07430"
                     /inference="COORDINATES: protein motif:HMM:NF018613.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HVS21663.1"
                     /translation="MNPNAPKILIISSDTGGGHRSAAAAIVAGLESFVKGESYAIRVV
                     RAVEDSAAIAARLVRLYNWLLRNKQHWMKYYYWAINRFRPETREFFHSRSIVYVRELF
                     ERWCPHIVVSVHPLTQHIFARVLKELKLADRIPLVTVVTDPYYGFWKGWACDDVSLYL
                     VASGEARQQLIDYGIAPERIKISGMPVHPKFDFPGELAAQAARTALGLDAEKFTVFLN
                     AGWEGGGNVPEIFRELVRGELDVQAIFLAGKNEALKHEAETVAAEARFPVKVIGYSDE
                     VEQLMRAANVMISKLGGLSTFEALNCRVPIIADVTTQPMPQEAGTVNLIVKGGAAVLL
                     QRASDVVPTVRRMIEDSTHYAKMRAATVSLIIPNSTKQIVEEIVALIPVAVVTNDSLV
                     AEQVA"
     gene            complement(1541..2707)
                     /locus_tag="VHD88_07435"
     CDS             complement(1541..2707)
                     /locus_tag="VHD88_07435"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HVS21664.1"
                     /translation="MDYTTRELLKRYAKLATGQPFAPVLLNILVTSVCDMRCTHCFFT
                     DELDDRPRKKLQMKTHEIDRIAETLGGNLGVLILAGGEPFTRKDLPEIVGSFYRHNNL
                     ESVYLMSNGQIQKRIFPDVTRILEECPNLNVTVALGIDGLGEQHDKIRQKPGSWTIAI
                     DTARELQAIKKQYSRLDIQTCTCFMHSNQDTIFDWYEFLKHDLKPDKVNFNYIRPPSA
                     DPIELDIDPTRYAKLANMIDDDSRHAAIKNNYGGNAGFFKAAIDIYMHGLIAKTQETQ
                     QAQLTCYAGTAGAVIYDEGTLSSCENLAPIGNLRDHNWNFQGLWLSPAMKARRKQAAD
                     GCFCTHESNCYYPSLPFNPKHLIQIKKIEREMKKARREFDKQVDEQPGGIAVNV"
     gene            complement(2793..>3411)
                     /locus_tag="VHD88_07440"
     CDS             complement(2793..>3411)
                     /locus_tag="VHD88_07440"
                     /inference="COORDINATES: protein motif:HMM:NF012385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HVS21665.1"
                     /translation="KVLRVLEEQRFEPVGSNSPVSVDVRVIAATNKRLDEEIEKGTFR
                     SDLYFRLNVIPFEVPPLRDRIEDVPSLIEHFNQRFAKAYGKKPKRFDPKAIETMQNYS
                     WPGNVRELRNTVERIVIMHQNHRVTMKDLPTFGDEEPPASSYRFPSFKEASDAYHREF
                     IQRKLDEADGNVSRAAELMGIDRSHLYRRMRALGISVRSERAGAS"
BASE COUNT          744 a          956 c          910 g          801 t
ORIGIN      
        1 agccgttcat tgctcctcct cttcacagat aattgtcccg tgaaaaaagt ccctagatct
       61 gcaattaggg acgccttcga accaagaatc ttggctctta ggtcacaggg ttttgaagta
      121 acggaaggct ggaaccggag agtatgctgt ctagatgcag gctcaggtga tcagcctcga
      181 aaccttgccc accgctggga cggacaccca gaagcttact gggaactggc accaatggcg
      241 cgcattatat tcttttctaa agatatgggt caaattttgg tcaatgctaa gttggcgatg
      301 tcacgaaccg gtcactgtcg cctaagcaac ttgttcagca acgagcgagt cgttggtaac
      361 gacggctact ggaattaacg ccacgatttc ttcaacgatc tgctttgtag aattcggaat
      421 gatgaggctg acagtcgcgg cccgcatctt ggcgtaatgc gttgaatctt caatcatccg
      481 gcggaccgtc gggactacat ccgaagcacg ttgcagcaac acggcggcgc cgcctttcac
      541 gatcaaattc acagtgccgg cttcctgtgg cattggctgc gtcgtaacat cggcgatgat
      601 cggcacgcga caattcaacg cctcaaacgt gctgagcccg ccgagttttg aaatcatcac
      661 gttggcagcg cgcattagct gctcgacttc gtccgagtag ccgatcacct tgacaggaaa
      721 cctggcctcg gccgctaccg tttcggcttc gtgcttcaaa gcctcattct tcccggccag
      781 aaaaattgcc tgcacgtcca gctcgccacg caccagttcg cgaaagattt ccggaacgtt
      841 gccgccacct tcccagccgg cattaagaaa gacggtgaat ttttcggcgt cgagaccgag
      901 cgcggtgcgg gcagcttgcg ctgccagctc gccgggaaaa tcaaacttcg gatgcaccgg
      961 catgccggag attttgattc gttccggcgc gatgccatag tcgatcaatt gctgtcgcgc
     1021 ttccccgctg gcgaccagat atagactcac gtcatcgcac gcccagcctt tccagaaccc
     1081 ataataggga tcggtgacca cggtcacgag cggaattcga tccgcaagtt tcagttcctt
     1141 gagcacccgc gcgaagatgt gttgggtcag tggatggaca ctgacgacga tgtgcggaca
     1201 ccagcgctcg aagagttcgc gcacataaac gatgctgcgc gaatgaaaaa actcgcgcgt
     1261 ctcgggccgg aagcgattga tggcccagta atagtacttc atccaatgct gcttattgcg
     1321 cagcagccag ttgtatagac gcacgagcct ggcggcaatc gccgccgaat cttcgaccgc
     1381 gcgcacgacg cgaatcgcgt aagactcgcc tttgacgaag ctctcaaggc ccgcgacgat
     1441 cgccgccgcc gccgagcgat gaccaccgcc ggtgtcggac gagatgatta gaatttttgg
     1501 ggcgttgggg ttcattaacg tgcgctaata agcggcgttt tcacacattg accgcgattc
     1561 cgccgggttg ttcatcaact tgcttgtcga attcccggcg cgctttcttc atctcgcgct
     1621 cgatcttctt gatttggatc aaatgcttcg gattgaacgg cagcgacgga tagtagcaat
     1681 tcgattcgtg cgtacagaag catccgtccg ccgcttgctt gcggcgcgct ttcatcgccg
     1741 gtgacaacca gagcccctga aagttccagt tgtgatcgcg cagattgcca attggcgcca
     1801 aattctcgca agacgacaga gttccctcgt cgtaaatcac cgcgccagcc gtgcccgcgt
     1861 aacaagtcaa ttgcgcttgc tgcgtttcct gcgtcttcgc gatcaggccg tgcatgtaaa
     1921 tgtcgatcgc cgctttgaag aagccggcgt tgccgccgta gttgttcttg atcgccgcgt
     1981 gtcgcgaatc atcgtcaatc atattcgcca gcttcgcgta acgagtcgga tcgatatcga
     2041 gttcgatcgg atcggccgac ggcggacgaa tgtaattgaa attaaccttg tccggcttta
     2101 gatcgtgctt tagaaattcg taccagtcga aaatcgtatc ctggttcgag tgcatgaagc
     2161 aggtgcaggt ctgaatgtcg agccgcgagt actgcttctt gatcgcctgc aactcacgcg
     2221 cagtatcgat cgcaatcgtc cacgagccgg gcttttgtcg aatcttgtcg tgctgctctc
     2281 ctaagccatc gatgccgagc gcgaccgtga cgttgagatt cggacactct tccagaattc
     2341 gcgtcacatc cgggaagatt cgtttctgaa tctgtccatt cgacatcagg taaaccgatt
     2401 cgagattgtt gtggcgatag aacgagccga cgatctcggg caggtctttg cgcgtgaacg
     2461 gctcgccgcc ggcaagaatc agcacgccaa gattcccgcc gagcgtttct gcgatacggt
     2521 cgatctcatg cgttttcatt tgcagcttct tgcgcggccg atcatcgagt tcgtccgtga
     2581 agaaacaatg cgtgcagcgc atgtcgcaaa cggaggtaac gagaatgttc agcagcaccg
     2641 gcgcgaacgg ctgcccggta gcaagtttcg cgtaacgctt aagtaattct ctggtcgtgt
     2701 aatccattta atgcctctta cgattaacgt ctccgaagag acaaatcacc ttatttgata
     2761 cggtaataga acattgatgt caacgtgaaa tttcaggacg ccccagcccg ttcactgcgc
     2821 acgctgatcc ccagcgcgcg catccggcga tagaggtggc tgcgatcgat gcccatcaac
     2881 tcagccgcgc gggaaacatt gccgtcggct tcatccaatt tgcgctgaat gaattcgcga
     2941 tgataggcgt cgctggcttc tttgaaagag ggaaatcgat aagacgacgc gggaggctct
     3001 tcgtcaccga acgtcggcaa atccttcatc gtcacgcgat gattctgatg catgatcact
     3061 atgcgctcga ctgtgtttcg caattcgcgg acgttgcctg gccacgaata gttctgcatc
     3121 gtttcaatcg ctttcggatc gaagcgtttc ggtttcttgc cgtaggcttt agcgaagcgt
     3181 tgattgaaat gctcgatcag cgaaggcacg tcctcgatcc ggtcgcgcag cggcggcact
     3241 tcgaacggaa tcacgttgag acgaaagtac aaatcgctgc ggaaagttcc cttctcgatt
     3301 tcttcatcca ggcgtttgtt cgtcgcggca atcacgcgca catcaacact gaccggcgag
     3361 ttgctgccca cgggttcgaa tcgctgctct tccagcacgc gcagcacttt c
//
LOCUS       DASZZE010000386         2680 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_96123, whole genome shotgun sequence.
ACCESSION   DASZZE010000386 DASZZE010000000
VERSION     DASZZE010000386.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2680
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96123"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..902)
                     /gene="xseA"
                     /locus_tag="VHD88_07445"
     CDS             complement(<1..902)
                     /gene="xseA"
                     /locus_tag="VHD88_07445"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR00237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HVS21666.1"
                     /translation="MSQPLFAALFDETENRPLSVSELTNSVRVALEARFASVWVEGEI
                     SNFKAHSSGHWYFTIKDEGAQLRAKCFRSSNTRIRFRPQDGLHVRARGRLSVYAPRGE
                     YELVVESLDPVGAGALRIAFEQLRDRLKAEGLFAPELKRALPIFPRRVGVVTSPSGAA
                     LRDILNVISRRTRTVHVLFAPARVQGEGAGREVASAIRFINQHHQQALAAGRTDDAVD
                     VLIIGRGGGSTEDLWAFNEEEVARAIRASAIPVISAVGHETDFTIADFAADLRAPTPS
                     AAAELVAAHEDELCARLDQLGTNL"
     gene            complement(917..1318)
                     /locus_tag="VHD88_07450"
     CDS             complement(917..1318)
                     /locus_tag="VHD88_07450"
                     /inference="COORDINATES: protein motif:HMM:NF013970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HVS21667.1"
                     /translation="MGAVVADTHALIWYLFEPQQLSDKARIALREAEANPGIIYVPTI
                     AIVEVRYLVEKGTITEDVFQKMLNSLLDPSTALTAVPLDLEISRALERVPKVKVPDMP
                     DRIIAATALHLSLPLITRDRKIQASNVQTIW"
     gene            complement(1318..1542)
                     /locus_tag="VHD88_07455"
     CDS             complement(1318..1542)
                     /locus_tag="VHD88_07455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21668.1"
                     /translation="MSIEHSVIEKILSLTPEQQRRVVEFVQSLEQDETYPRARRSLMG
                     MFSDLNVHITEEDIAEARREMWGSFPREGF"
     gene            complement(1558..1878)
                     /locus_tag="VHD88_07460"
     CDS             complement(1558..1878)
                     /locus_tag="VHD88_07460"
                     /inference="COORDINATES: protein motif:HMM:NF037100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HVS21669.1"
                     /translation="MRHKIDVDKSALAGFCRHHHILKLAFFGSVLRDDFKPDSDVDML
                     VEFEPGQEPGLLGLAKLERELSPLIGNRKVDLRTSEDLSRYFRDEVVASAELQYATID
                     SAQS"
     gene            complement(1922..>2680)
                     /locus_tag="VHD88_07465"
     CDS             complement(1922..>2680)
                     /locus_tag="VHD88_07465"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HVS21670.1"
                     /translation="GAERKVMSVAPANEPFNLVMLLDVSGSVEERIDFIRKAARDFLN
                     TASPQDRISIISFRDDIQVISDFSTDRRRLAKKLDEIDAGGATALYDALAYVLSTTLK
                     PLRGDRTAIVILSDGDDNKSFIPLPALLAATSESGALIYPLYVPSGLIPESSVANPEF
                     TADPLRSRYLTLTTRADEDGRKLAGVSGGVYYPIHRLEDLQRAYNDVVTQLRTAYTIT
                     YASNSEPSQRRVKVRANRDGASVRLSPVVGVATP"
BASE COUNT          592 a          757 c          764 g          567 t
ORIGIN      
        1 tgcagatttg tgcccaactg atcgagcctc gcgcaaagct cgtcctcgtg cgcggccacc
       61 aactcagccg ccgcggaagg cgtaggcgcg cgcaagtcag ccgcaaaatc cgcgatagtg
      121 aaatcagttt cgtggcccac cgcggagata accgggatcg ccgaagcgcg aatcgcccgc
      181 gccacttctt cttcgttgaa ggcccacaaa tcttcggtcg agccgccgcc gcgaccgatg
      241 atcaaaacgt caaccgcatc gtctgtgcgc cctgcggcga gcgcttgctg gtggtgttgg
      301 ttgatgaatc ggatcgcgct cgcaacctcg cggccggcgc cttcgccctg cactcgcgcc
      361 ggcgcaaaca gcacgtgcac ggtgcgggtg cggcgcgaga tcacgttgag aatatcgcgc
      421 agggcagcac cgcttggcga agtaacaacg ccgacgcgac gcggaaaaat cggcagcgcc
      481 cgtttcagtt ccggggcgaa caatccttcg gctttcaagc ggtcgcgcag ttgctcgaat
      541 gcgatgcgca gcgcgcctgc tcccaccgga tccagcgact caacgactaa ctcgtattca
      601 ccccgcggcg cataaacact cagccgcccg cgcgcgcgca catgcaaacc atcctgcggg
      661 cgaaaacgaa tgcgagtgtt cgaagagcga aaacatttcg cgcgcagttg cgcgccttcg
      721 tccttgatcg tgaagtacca atggcccgac gaatgcgctt tgaaatttga aatctcgcct
      781 tcgacccaga cggatgcaaa acgcgcctca agcgcgacgc gcacggaatt agtcagctcc
      841 gacacactca gtggccggtt ttcagtttcg tcgaaaaggg ctgcgaataa cggttgagac
      901 attagatcaa acacagttac cagatagtct ggacgttcga agcctgaatc tttcgatccc
      961 gcgtgatcaa gggcaagctg agatggagtg ctgtagcagc gataatgcga tccggcatgt
     1021 caggaacttt gacctttggg acgcgttcga gcgctcgaga gatttcaagg tcgagcggaa
     1081 ctgcggttag tgcagtgctg gggtcaagta gcgagttcag cattttctgg aaaacatctt
     1141 cggttatcgt tcccttctct acgagatatc gcacttcgac aatcgcaatg gtagggacat
     1201 atatgatgcc tgggtttgct tcagcctcgc ggagggcgat gcgagctttg tcagacaatt
     1261 gctgtggttc aaatagatac cagataagcg catgagtgtc ggcaacaaca gcgcccatta
     1321 gaagccctca cgaggaaagc tgccccacat ctcgcgtcgc gcttctgcta tgtcctcttc
     1381 ggtgatatgg acattaagat ccgagaacat tcccatcaaa ctgcggcgcg cgcgcgggta
     1441 ggtttcgtct tgttcaagag attgaacaaa ctccacgact ctgcgttgct gctcgggcgt
     1501 caaggagaga atcttttcaa tgactgaatg ctcgatactc attcttcgac ctctgcttca
     1561 tgattgtgcg ctatcaatcg tagcatattg aagttcagcg ctcgcaacta cttcgtcgcg
     1621 gaagtacctg ctcagatctt cagaagtgcg aaggtcgact tttcgattgc caatcagtgg
     1681 tgaaagttcg cgttccagtt tcgccagacc tagcagaccc ggttcctgcc caggctcaaa
     1741 ctcgaccaac atatcgacat cgctgtcggg cttaaaatca tcgcgcaaca ccgagccaaa
     1801 gaacgcgagt ttcagaatgt gatgatggcg acagaatcca gccagggcgc ttttgtctac
     1861 gtctatttta tgtcgcatct ttttttggac tctcctgctg atgattcccc cgtcttagct
     1921 cctatggagt ggccactcca acgactggac tcaagcgcac cgaagcgccg tcgcggttgg
     1981 cgcggacctt gacgcggcgc tgagagggct cagagtttga ggcgtaagtg attgtgtagg
     2041 ccgtgcgcaa ctgagtgacg acgtcattgt aagcgcgttg cagatcttcc aggcgatgga
     2101 ttggatagta gacgccgccg gaaacgccgg cgagtttgcg accgtcttcg tcggctcgcg
     2161 tggtcagcgt cagatagcgc gaacgcagcg ggtcggcggt gaactccggg ttggcgacgc
     2221 tcgactcggg aatcaaaccc gaaggcacat acaagggata gatcaaagcg ccggattcac
     2281 tggtggccgc caacaaagcg ggaagcggaa tgaacgattt attgtcatca ccatccgaca
     2341 ggattacgat cgcggtgcga tcgccacgca ggggtttcaa ggtggtcgac aacacataag
     2401 cgagcgcgtc ataaagcgcg gtggcgccgc ccgcatcgat ctcgtcgagt tttttcgcaa
     2461 gccgccgccg gtcagtgctg aagtccgaaa tcacctgaat gtcgtcgcga aagctgatga
     2521 tcgagatgcg atcctgcggg ctcgcagtgt tcagaaagtc gcgcgctgct ttgcggataa
     2581 agtcgatgcg ctcctcgacg ctgcctgaga cgtcgagcaa catcacgagg ttgaacggtt
     2641 cattggccgg cgctacgctc atgactttgc gctcggctcc
//
LOCUS       DASZZE010000387         2506 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_221388, whole genome shotgun sequence.
ACCESSION   DASZZE010000387 DASZZE010000000
VERSION     DASZZE010000387.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2506
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_221388"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..424)
                     /locus_tag="VHD88_07470"
     CDS             complement(<1..424)
                     /locus_tag="VHD88_07470"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HVS21671.1"
                     /translation="MSITRNETAEVVIIGGGVIGLTIARALRQRGVRDVTLIERGQLG
                     AEASWAAGGILGPQVEADRTDGFFQLACASRDMYPAFANALREETAVDVELDTTGTLY
                     LGFTQEDENELRRRFEWQTRAGLRVELLGADEARRLEPC"
     gene            1063..2061
                     /locus_tag="VHD88_07475"
     CDS             1063..2061
                     /locus_tag="VHD88_07475"
                     /EC_number="1.1.1.41"
                     /inference="COORDINATES: protein motif:HMM:TIGR00175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005962 - mitochondrial isocitrate
                     dehydrogenase complex (NAD+) [Evidence IEA];
                     GO_component: GO:0045243 - cytosolic isocitrate
                     dehydrogenase complex (NAD+) [Evidence IEA];
                     GO_function: GO:0004449 - isocitrate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_process: GO:0006102 - isocitrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate dehydrogenase (NAD(+))"
                     /protein_id="HVS21672.1"
                     /translation="MNRITLIPGDGIGPEVASAVVRIVDASGAQIEWETHFAGQQALE
                     KFGDTLPQDLLESIKRNKVALKGPITTPVGKGFTSVNVGLRKALDLYANLRPVRALPN
                     VPCRNPHLDIVVVRENTESLYSGLEHEVVPGVVESLKIITEKASTRIARFAFEFARRE
                     KRKKITCTHKANIMKMSDGLFLACFYKVAKDYPEIETDDKIIDNASMQLVMRPEQFDI
                     LLCENLYGDIVSDLCAGLIGGLGLVPGANIGEKGAVFEAVHGSAPDIAGKGIANPTAL
                     LQSAILMLHHINERAAADKIESAMLKVFEEGKVRTRDIGGTATTDEFADAIIAKLG"
     gene            2289..>2506
                     /locus_tag="VHD88_07480"
     CDS             2289..>2506
                     /locus_tag="VHD88_07480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21673.1"
                     /translation="MKTNPLRSQTVILKRGQHAKYPPYAFTEHGAIMAAMVLNSPQAV
                     AMSVVRAFIQMREQLAANREILKRLAEI"
BASE COUNT          571 a          710 c          705 g          520 t
ORIGIN      
        1 tgcacggctc cagtctcctc gcttcatcgg cgcccagcag ctcaaccctc agtcccgcgc
       61 gcgtctgcca ctcaaatcgg cgccgcagtt cgttttcgtc ttcctgagta aagccgagat
      121 agagcgtgcc cgttgtgtcc aattcaacat cgacggcggt ctcttcgcgc aaagcattcg
      181 caaacgcggg atacatgtcg cggctggcgc aggcgagctg gaaaaaaccg tccgtccgat
      241 cggcttcgac ctgtggcccg agaattccgc ccgccgccca cgaagcttcg gcgccgagct
      301 gcccgcgttc aatcagcgtc acgtcgcgca cgccgcgctg ccggagcgcg cgcgcaatcg
      361 tcaacccgat gacaccaccg ccgatgatga cgacttctgc tgtttcgttt cgcgtgattg
      421 acatgacgag tggtcagtgt tcggtgatca gcggtcagtt gtcagttgtc agacgaagtc
      481 ttatgctgaa acgcgttggc aaagagtccg cgaagcggac gcttgaaaat agcccagcac
      541 tttagtgctg ggtaagcgtt aataaaagac caaagcccgt gaaacgggcg cagttacaga
      601 accgggagcg gtagcgaccg gatgcgagcg ctcaactgac tgcacgtttc gttacctacg
      661 acatcctcag gcgtagcttg agtttatgat ccgctcgcta ccgctcgcgg ttccgtacca
      721 aagcttctgc cgtccgcttc gcggactatg tttgaaaatt gttgctgcgt cccagcgatg
      781 aagagtctgt gtcaaaactc aacttgagtg gcaatcaacc caaacactta aacgcagaga
      841 ccgcagagtt ctgcgcaaag gtcgcggagg aaggccttct ttgcgttact ttgcgaaatc
      901 ctccgcaccc tctgcgttta attcttcgat tagtcaccga acctccgagt tttgacacag
      961 actctgaatc gctgggctat attcgttcgt ccgcttcgcg gactgactaa ggatttctgc
     1021 ttactgctca ctggctacta acactgacta ctgaccattt ttatgaatcg tatcacactg
     1081 attccgggcg atggcatcgg ccccgaagtc gcttccgccg tcgtgcggat tgtcgatgct
     1141 tccggcgcac agatcgaatg ggagacgcac tttgccggcc agcaagcgtt ggaaaaattc
     1201 ggcgacacgc tcccacagga tcttctcgaa tcgattaaac gtaacaaggt tgcgctgaaa
     1261 ggaccgatca cgacaccggt cggcaaaggg ttcacttcgg tcaacgtagg tttgcgcaag
     1321 gcgctcgatc tctacgcgaa cctgcgaccg gtgcgcgcgc tgccgaacgt tccgtgccgg
     1381 aatccgcatc tcgatatcgt ggtcgtgcgc gagaacactg aaagcctcta ctccggcctt
     1441 gagcacgaag tggttcccgg agtggttgag agtttaaaga tcattacaga gaaagcttcg
     1501 actcggattg cgcggttcgc gttcgagttt gcgcgccgag aaaagcgcaa gaagatcacc
     1561 tgcacgcaca aagcgaacat catgaagatg tccgacggcc tgttcctggc atgcttttac
     1621 aaggtggcga aggattatcc ggagattgaa acggacgaca agatcatcga caacgcgtcg
     1681 atgcaactcg tcatgaggcc tgaacaattc gatatactgc tgtgtgagaa tctctacggc
     1741 gacatcgtgt cggatttgtg cgccgggctg atcggcgggc tcggcctcgt tcccggtgca
     1801 aacatcggcg aaaaaggcgc ggtgttcgaa gccgtccacg gctctgcacc cgacattgcc
     1861 ggcaaaggca tcgcaaatcc aactgcactg ctgcaatccg caattctgat gctccatcac
     1921 atcaacgaac gcgccgctgc cgacaagatt gagagcgcaa tgctgaaagt gttcgaagaa
     1981 ggcaaggtcc gcacccgcga catcggcggc accgcgacaa cggatgagtt tgccgacgcg
     2041 atcattgcga agctgggtta agtctgtcat gagatcaacg attgattcgc aggaactagc
     2101 tcgccggttc aacgaagaag aggcggtgtg gcggcggtat gaagagatac gcaaagcgcg
     2161 acgacggtgc ggcaaggaat cgcctttgcc ggaggaggcc ttggataatc tggactggca
     2221 gaaagcggag ccccgacacg tcggggtcgc gccgtccgcg ccgcaggctt tttctctcgc
     2281 tcgcaaacat gaaaaccaac cctttaagat cacaaactgt gatcttaaag cgcgggcagc
     2341 atgccaagta tccgccttat gcattcaccg agcacggagc aatcatggct gcgatggtac
     2401 tcaatagccc gcaggcggtc gcgatgagcg tggtacgggc tttcatccag atgcgcgagc
     2461 aactggcggc gaacagggaa attctcaaac ggctggcgga gattga
//
LOCUS       DASZZE010000388         3193 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_96160, whole genome shotgun sequence.
ACCESSION   DASZZE010000388 DASZZE010000000
VERSION     DASZZE010000388.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3193)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3193)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3193
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96160"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..299)
                     /locus_tag="VHD88_07485"
     CDS             complement(<1..299)
                     /locus_tag="VHD88_07485"
                     /inference="COORDINATES: protein motif:HMM:NF013565.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21674.1"
                     /translation="MLRIYNTLSGRVEEFRPLVEGEAKFYYCGPTVWDFGHIGNFRSA
                     IAADVLRRYLKFKGLRVTQVMNITDVDDRIISKSRESGKALDDYTAKYIEAFWED"
     gene            complement(1016..2149)
                     /gene="thiL"
                     /locus_tag="VHD88_07490"
     CDS             complement(1016..2149)
                     /gene="thiL"
                     /locus_tag="VHD88_07490"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR01379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009030 - thiamine-phosphate kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HVS21675.1"
                     /translation="MNEFDFISRLREQTRSRKHSSRVVTGIGDDAAVISQMAGRHAVV
                     TTDLLVEDIDFHRDAAPPRLVGHKALAVSLSDIAAMGARPLCSLVSIGLPSGVWNQGF
                     KDEFFEGYLKLADQYGVTLAGGDVSETKDRIVIDSIVIGEAAAGIAVLRSTAQPGDQI
                     FVTGTLGGAAAGLKLIEMGARISRQEYAKARGASPTVREGSVTEPLAVASGLRTANQS
                     LPRSEDDAIQTLLLRHLRPSPRVGWGIVLGEERLASSMIDISDGLSSDIAHVCRESNV
                     GALIQSAKIPIDKDVTKLCGRRALDPLMLALHGGEDFELLFTVHPDNVAHLPKRVDGV
                     AITCVGEVTNEPAVIRIAEKNRVWDLQPQGFQHFAERVKNPPV"
     gene            complement(2159..>3193)
                     /locus_tag="VHD88_07495"
     CDS             complement(2159..>3193)
                     /locus_tag="VHD88_07495"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HVS21676.1"
                     /translation="EPYRPTPDYIKDAMSSAMHENKTRYAPSSGLPELRRAIADKLQE
                     HNGISASEENVIVVNGGMQGLFGAFQSIVNPGEEVLVFAPYWTPIKDLLAHCRGRLVL
                     VPTDEARANGFRETLERYASAQTRAIYFNTPMNPTGVVFTRKETEEVARFAVDRDLVV
                     IADEAYEDIVYDGEHVSIASLDGMFERTITSFTLSKSYAMTGWRIGYAVAAEPWMTGL
                     RKATLYSSNGVSTPTQWAALAALTTASDFLATSRAAYRERRDLLLAGLNELGLQCAPP
                     AGAFYAFPDTASISRDSREASEALLNRAQVATVPGVVFGPQGEGHVRFSFSTSIEMIE
                     GGLESMRRNL"
BASE COUNT          699 a          921 c          882 g          691 t
ORIGIN      
        1 aagtcttccc agaacgcttc gatatacttg gcggtgtagt cgtcgagtgc tttgccgctc
       61 tctcgcgact tcgaaataat gcggtcgtca acgtcggtga tgttcatcac ctgcgtgaca
      121 cgtaagcctt tgaacttcag atagcgacgg agcacgtccg cagctattgc cgagcgaaaa
      181 ttgccgatgt gaccgaaatc ccaaacggtc gggccgcagt agtagaactt cgcttcgcct
      241 tcaaccagcg ggcgaaactc ttcgacacgg ccagagagtg tgttgtagat gcggagcatg
      301 aatgcgagtc taagaaagga ctgaaggtca gtcaaacggg ctcggggatc taacgtcgtg
      361 ggactcacgg ccactcgtca ccgttcacgt gatttgacca gtcagtctgt tgaaatagcc
      421 tgaggaactg atacacgaat tcatcttggc ggagcgattc tcacgcgaat aagcttcacg
      481 cgcgtgacgt cttcgattcg cgaattcggt ttgcgaactc ggcatcgcga gtaaagcaga
      541 gatcgtattc gcgtgctgcc aggctgtaaa gagcgccatt atcgattcca tctaatcgaa
      601 gcgagtgtac cccgatgaac gtcgtggccc tcatcagcga gtgcagttag cagcttccgc
      661 ggaaggctct cgtctagaga aggatcttca cgccgcggcg gcttcctttt cgtgtgcctg
      721 ttgacgcaac actccccgaa cggactcctc agtcaacgtc ggatacgcct caatgatctc
      781 cgcgacgctc attccgcttg ctaagcattc gagcaaaaaa gctactgcga tgcgtgtcct
      841 ctcacccgcg ccttgccgcc caagtggtct ttatctgaaa caatccaatt ttcgtcgttc
      901 atcgtcttag tacctcgaat ccctcgcgaa gaggctgctc tacttccatt tcagccgtac
      961 ggggcgctga tgtcaatagt gaaagccggg tcgtgctaga cgcagcaagt ctgatctaaa
     1021 caggcgggtt ctttactcgt tcggcaaaat gctggaaccc ttgcggttgc aaatcccaaa
     1081 cgcgattctt ttcagctatg cgaatcacgg cgggctcgtt tgtaacttcg ccgacgcagg
     1141 ttatcgcgac accatcaact ctttttggca agtgtgcgac gttgtccgga tggacggtga
     1201 acagcagttc gaaatcctcg ccaccgtgca gggccagcat cagcggatca agcgcccggc
     1261 gaccacacag tttggttacg tccttgtcaa tcggaatctt tgcagattgg atcaacgcgc
     1321 cgacgttgct ctcgcgacac acgtgagcga tgtcggaaga caaaccgtcg ctgatgtcga
     1381 tcatggagct tgccagacgc tcttcgccga gcacgattcc ccagccgacg cgcggtgacg
     1441 gacgaaggtg acgcagcaac aaagtttgaa tggcgtcgtc ctcggatctc ggaagggatt
     1501 gattggcggt gcgcaacccg ctcgctaccg cgagcggttc ggtaacggag ccctccctta
     1561 cggtcgggct agcgccccga gctttggcgt actcctgcct actgattcgc gctcccatct
     1621 caatcagttt caatccggcc gccgcgcccc ccagcgttcc cgtcacgaag atttgatcac
     1681 cgggttgcgc ggtggatcgc agaactgcga tacccgcggc tgcttcaccg atcacgatcg
     1741 agtcgatcac gattcggtcc ttggtttctg acacgtcgcc accggcgagc gttactccat
     1801 attgatccgc gagtttgaga tagccctcga agaattcatc cttaaaacct tgattccaca
     1861 ctccagatgg cagaccgatt gacacaagcg agcaaagcgg tcgcgcgccc atcgcggcga
     1921 tgtccgagag agaaaccgcg agcgctttgt ggccaaccaa tcgaggcggc gcagcgtcgc
     1981 ggtggaaatc aatgtcttca accagcaggt cagtcgtgac gacggcatgg cggcccgcca
     2041 tctgcgagat gacggcggca tcgtcgccga ttccggtgac gacgcgcgac gagtgctttc
     2101 gcgatcttgt ttgttcgcgc aggcggctaa tgaaatcaaa ctcattcatg cgggcaagct
     2161 agagattgcg gcgcattgat tcaaggccgc cttcgatcat ttcgatcgat gtggagaaag
     2221 agaaacgcac gtgaccttcg ccctgcggac caaacacgac accaggcaca gtggcgacct
     2281 gggcgcggtt gagcaaagct tcggaagctt cgcggctgtc gcggctgatg ctcgccgtgt
     2341 caggaaaagc ataaaaagca ccggccggcg gcgcgcactg taagccgagt tcgttcagac
     2401 cagccaaaag caaatcgcgc cgctcacgat aagcggcgcg cgacgttgcc agaaaatccg
     2461 acgcggtggt caacgccgcg agcgcggccc actgcgttgg cgtcgaaaca ccgttcgacg
     2521 aatacaacgt cgccttgcgc aggccggtca tccatggctc ggccgcgact gcatagccga
     2581 tccgccaacc ggtcatcgca tacgactttg ataaagtgaa tgaagtgatc gtgcgttcaa
     2641 acattccgtc gagtgacgcg atcgaaacat gttcgccatc gtaaacaatg tcttcgtaag
     2701 cttcgtcagc aatcacaacc agatcgcggt caacggcgaa gcgcgctacc tcttccgttt
     2761 cctttcgcgt gaaaaccacg ccggttggat tcatcggcgt attaaaatag atagcgcgcg
     2821 tctgtgcgct tgcatagcgc tcaagagtct cgcgaaaacc gttggcgcgt gcttcgtcgg
     2881 ttggtacgag cacgagtcgg ccgcgacagt gcgcgagtag atccttgatt ggagtccagt
     2941 acggcgcaaa aaccaaaact tcttcacctg gattcacgat tgattggaaa gcaccgaaca
     3001 aaccttgcat gccgccgtta actacgatca cgttttcttc gctggcggaa atgccgttgt
     3061 gttcttgcag cttgtccgcg atcgcgcgac gcaactccgg aagtcccgac gacggtgcgt
     3121 agcgagtctt gttctcgtgc atcgcgctgc tcatcgcatc cttgatgtaa tcgggagtcg
     3181 gacgataggg ttc
//
LOCUS       DASZZE010000389         4401 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_12109, whole genome shotgun sequence.
ACCESSION   DASZZE010000389 DASZZE010000000
VERSION     DASZZE010000389.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4401)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4401)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4401
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12109"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..689
                     /locus_tag="VHD88_07500"
     CDS             <1..689
                     /locus_tag="VHD88_07500"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="asparagine synthase C-terminal domain-containing
                     protein"
                     /protein_id="HVS21677.1"
                     /translation="PGGLPGRLTAPLRNAKKFARSAALGFEDRYLGYETYFTDGAKQR
                     LYSEEMRTATDGVDAYVAHRRYFARVKEAAPLNQMLYVDLKTFLPCLNLMTTDKTSMA
                     ANLEVRVPFLNQEMLELAARMPPDLKLRGLKRKYILKRAMEKVLPREIVWRKKAGFGA
                     PIRSWLRGPLRPMVDELLSEETVRRRGLFRPEEVRRIIDANLSGREDYNLQVFQLLNL
                     ELWQRAFLDR"
     gene            complement(1433..3616)
                     /locus_tag="VHD88_07505"
     CDS             complement(1433..3616)
                     /locus_tag="VHD88_07505"
                     /inference="COORDINATES: protein motif:HMM:NF013567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bi-domain-containing oxidoreductase"
                     /protein_id="HVS21678.1"
                     /translation="MQPQFLKDMKQVLQNLKTGDVAVTDVPTPLARPGFVLVRTAASL
                     ISAGTERMTVEAGQKSLLGRAVEQPNLVKQVIQKAKSEGVLNTIDAVRSKLGSLVALG
                     YSTAGTVVGLGDGVGGFHVGDRVACAGVGYASHAEVLSVPKNLCVRVPESVSFDAAAF
                     STLGAIALQGVRLAELTLGESVVVIGLGLIGQLTVQLLNAHGCRVFGIDLDETRVALA
                     QQLGADDGCAPDDDARQRVMQWSRGHGADAVLITAATSSNEPVELAGEISRQKGRVIA
                     VGAVGLSIPRQPYYNRELTFKISMSYGPGRYDPEYEERGHDYPLGYVRWTEGRNLEAF
                     LDLLAEGRVNVEGLITHRFKLEQAEQAYQLITGESSEPYLGVVLQYDSDREVESRIPI
                     AAKKSTLAAAKNVRVGLIGAGNYARAMLLPHFKSAGAEFHSIATASGVTARQVGERYG
                     FRYCVSSGQEVIDTDDVNLIVIATRHDTHAELARRALERGRHVFVEKPLALNHDELKS
                     VITAAAQSNGELMVGYNRRFSPLARTAKEFFDDRQAPLSINYRINAGRIPREHWAHNP
                     REGGGRLVGEVCHFIDFMHFITGSLTKRVYAESIASRNQDITDEDSVFITLRFADGSN
                     GSIAYLAEGDKALPKERVEIFCAGKTFVIDDFRSATAYHNGREKKTKLREQDKGQKDE
                     VRAVCAVVLEGAAAPIALNDLATTTRATFRIRESLRTGLPIEGLS"
     gene            3986..4291
                     /locus_tag="VHD88_07510"
     CDS             3986..4291
                     /locus_tag="VHD88_07510"
                     /inference="COORDINATES: protein motif:HMM:NF016394.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CD225/dispanin family protein"
                     /protein_id="HVS21679.1"
                     /translation="MSQNWTPPAPPTASATVPNYLVWAIVSICGCGWPLAIPAIIFAT
                     QVNSKLAAGDIAGAQDASKKAKLFAMIAIGCDILFWIGMIIYFVFVVGVVALSGSSR"
BASE COUNT          966 a         1202 c         1207 g         1026 t
ORIGIN      
        1 tgcccggcgg cttgccggga agactgactg cgccgttgcg caacgcgaag aaatttgcgc
       61 gtagcgccgc gctgggtttc gaagatcgtt acctcggcta cgaaacgtat ttcaccgatg
      121 gagcaaaaca acgcctgtac agcgaagaaa tgcgtacggc aaccgacggc gttgacgcgt
      181 atgtcgcgca tcgacgttat tttgcgcgag tgaaagaagc agcgcctctc aaccagatgc
      241 tttacgtcga tctgaaaaca tttctgccgt gcttgaatct catgaccacc gacaagactt
      301 caatggccgc gaatctggaa gtgcgcgtgc cgtttttgaa tcaggaaatg ctggagctgg
      361 ccgcgcggat gccgcccgat ttgaagttgc gcggattgaa acgcaagtac attttgaagc
      421 gggcgatgga gaaggtgctg ccgcgcgaaa tcgtctggcg caagaaggcg gggttcggcg
      481 cgccgattcg ttcatggctg cgcggccctc tgcgtccgat ggttgacgag ttgttatcgg
      541 aagagacggt gaggcgccgg ggtctgttcc ggccagaaga agtcaggcgg atcatcgacg
      601 ccaatctttc gggaagggag gactacaatc tgcaagtttt tcaactgctg aatttggaac
      661 tatggcagcg agcgtttctg gatagataga gtgatggctc gttttttcgc ttcgcggctt
      721 cgccgcttcg atgcgcggca agtctcagac ttgccgttta aggctcgcta actttcacag
      781 gtctatgacc tgcgccagac gatcttatca atatcaactc gcagcgcttc gtcctcgttc
      841 gcacatctgg tccaaaagcg cgcgctagac caccgatagt caaccgcccg gtcagccaat
      901 tcggcacgta caggattgag gtgtatgtaa ttcaccttct gcataaacat tgattcactt
      961 gtatctgaat catgctgcca gagcgagtag cgatgatttc gtttccagtc ctcatgctga
     1021 agctttctga gagagatctt catgcttctt ctctttcaaa tgggccaaca ctctacgact
     1081 aacaataccc tttacgaact ggcactgtcg atggctttcg ggggctgttc gtcaacaaat
     1141 ggatgtggtc cggcattagc acgtagggcg aacaacaaga agccgcaaga agttcgagcc
     1201 tcatcaaggg ccgcgcacgt aaccgccttt attgcttcag tctgaaaaac aggcaagcgc
     1261 tcctttgcaa ctgccgtaat gaagaggcag ggatgatcga ttgagatggt aggcttcatt
     1321 tttcctgccg ggtcatagac ccgatgaaag tgcaaggttg agcgtttcgg caagtcgcag
     1381 acttgccgcg catcagaagg caaagccctt tgaaacaatc actggctgca agctagctca
     1441 aaccctcaat gggcaaacct gtccgcaagg attctctaat gcgaaacgtc gcgcgcgttg
     1501 tcgtagccaa atcattcaag gcaatgggcg ccgcggcgcc ttcaagaact acagcgcaaa
     1561 cggcgcgcac ttcatccttt tgtcctttgt cctgctcacg cagttttgtt ttcttctcgc
     1621 gaccgttgtg ataggcggtc gcgctgcgaa aatcgtcgat tacgaaagtc ttgcctgcgc
     1681 agaaaatctc gacgcgttcc tttggcagcg ctttgtcgcc ctcggccaga tacgcgatcg
     1741 aaccgttgga gccatccgcg aaacgcagcg tgatgaaaac ggaatcttcg tcagtgatgt
     1801 cttgattgcg acttgcgatt gattcggcgt aaacgcgctt ggtaagcgaa ccggtgatga
     1861 agtgcatgaa atctatgaag tgacaaacct caccgactaa gcgaccgccg ccttcgcggg
     1921 gattgtgggc ccagtgttcg cgcggaatgc ggccagcgtt gatgcgatag ttgattgata
     1981 gtggtgcttg ccggtcgtca aagaattcct tcgccgttcg cgccagaggc gagaagcggc
     2041 gattgtaacc gaccatcaac tcgccattcg attgggcggc ggcggttatt acactcttga
     2101 gttcgtcatg attcaacgcc aaaggtttct cgacaaaaac atgacgcccg cgttcgagag
     2161 cgcgccgtgc aagctcagca tgcgtgtcat gccgtgtggc aatgacgatc aggttcacgt
     2221 cgtcggtgtc gatcacttcc tgcccgcttg aaacgcagta gcgaaatccg tatctttctc
     2281 caacctggcg tgcggttacg cccgacgccg tggcgatcga gtgaaactcc gcgcccgccg
     2341 atttgaagtg cggcaagagc atcgctcgcg cataattgcc ggcgccaatc aaaccgacgc
     2401 gaacgttctt cgcggcagcc aacgttgatt tttttgcagc gattggaatg cgagattcca
     2461 cctcgcgatc agaatcgtat tgcagcacga cgccgagata cggctcactc gattcaccag
     2521 taatcaactg ataagcctgt tcggcttgct ctagtttgaa tcgatgcgtg atcaaacctt
     2581 cgacattgac gcgtccttcg gcgagtagat ccaggaatgc ttcgaggttg cgtccctcgg
     2641 tccagcgcac gtaaccaagc ggataatcgt ggccgcgctc ttcgtattcc ggatcgtagc
     2701 gccccggccc gtacgacatc gaaatcttga acgtgagttc gcggttgtag taaggctggc
     2761 gcggaatgct gagtccgacg gcgccgaccg cgatgacgcg tcccttttga cgagagattt
     2821 ctccggcaag ctcgacaggt tcattcgacg acgttgccgc agtaatcaac accgcgtcgg
     2881 cgccatgacc gcgcgaccat tgcatcacac gctgtctagc atcatcgtcc ggcgcgcagc
     2941 cgtcgtcagc gccgagttgt tgcgccaacg cgaccctggt ttcgtcgagg tcgatgccga
     3001 agacgcgaca accatgagca ttcagtaact gaacggtaag ttgtccgatc aatccaagac
     3061 cgatgacaac cacagattcg cccaaggtca gttcagccag ccgcacacct tgcagcgcga
     3121 ttgcgccgag cgtgctgaat gccgcagcat cgaagctaac actttcaggt acgcggacgc
     3181 agaggttttt tggcacagac aaaacctcgg catgcgaagc gtagccgacg ccggcgcacg
     3241 cgacgcgatc gccgacgtga aaacctccaa cgccatcgcc aagaccgaca acggtgcctg
     3301 cggtgctgta gccaagcgcg acgagcgaac caagtttcga gcgcaccgca tcaatcgtgt
     3361 tcagcactcc ttcgcttttc gctttctgaa ttacctgctt gacaagattg ggttgctcga
     3421 ctgctctgcc gagcaggctc ttctgcccag cttcgacggt catgcgttcg gtgccggcgc
     3481 taatcaacga agccgccgtg cgcaccagca caaatcccgg acgcgccaac ggcgtaggca
     3541 catcagtgac cgctacgtcg cctgttttta gattctgaag gacctgcttc atgtctttga
     3601 gaaactgagg ctgcatgagc ctcgcaggac ttaccgcgaa gcatcagcac cttggtttga
     3661 ccggctcaga ctatcctcga ttttcgttta cgtagtcaat tgtgtgccgt cgatgcgccg
     3721 gtgcgtttcc cggacaatac gagaggcgcg tctcagatat tcgacaaatt tgattgacaa
     3781 tggagtactt cttttgttag ttatgcttcg ctgtttacag ctctaatcag gtaaaaagcg
     3841 tttaaatttt cgtatcaaac tcggaggaac gatcgtgttc accgccgact ttgctgccta
     3901 aaagcgcagc gattgcttca gtcaggcctc gttgattttg ggaaatgctt cgcagtagga
     3961 attcaaaaac cttaggagag taaaaatgtc gcaaaactgg actccgcctg cgccaccaac
     4021 ggcgtcggca actgttccga actatttggt ctgggccata gtatcgatct gtggctgtgg
     4081 ttggccactc gctattccgg cgatcatttt cgccacacag gtgaatagca agctggctgc
     4141 gggagatatc gccggggccc aggatgcctc aaagaaagcc aagctgttcg cgatgattgc
     4201 catcggatgc gacattctat tctggatcgg catgatcatc tactttgtgt tcgtggtcgg
     4261 cgttgttgca ctgagcggca gctcgcgcta agcgattcga tcaacttttg gcgccctcgc
     4321 gggttccatg tccgttcgtt tcggtgcttc cgtaagagtt tgcgtgccgt ttgggtcgtc
     4381 tgatgtgact gctccaaacg g
//
LOCUS       DASZZE010000390         3797 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_290706, whole genome shotgun sequence.
ACCESSION   DASZZE010000390 DASZZE010000000
VERSION     DASZZE010000390.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3797)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3797)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3797
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290706"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..443
                     /locus_tag="VHD88_07515"
     CDS             <1..443
                     /locus_tag="VHD88_07515"
                     /inference="COORDINATES: protein motif:HMM:NF012933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21680.1"
                     /translation="FERLKSNIETFTPEGFIESGESYLRSLGVTRQKAHYCVQVAQAF
                     TNGHLNKIGRMSDEDAHARLLSIKGVGPWSANIYLLMALRRPDIWPDGDVALATAVGK
                     LRRLSTCPSFVELAKIAERWRPYRSVAARMLWQYYLAERNGSGI"
     gene            564..1016
                     /locus_tag="VHD88_07520"
     CDS             564..1016
                     /locus_tag="VHD88_07520"
                     /inference="COORDINATES: protein motif:HMM:NF022019.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HVS21681.1"
                     /translation="MKKRTDASFPNDKTIYKFGSKQQQASRVFEFCEQNPGYSDVAET
                     LRALIERAERKSPKKTAVAQVTLGEVYLLKSGRFHKIGRTNAVGRRERELAIQLPEKA
                     NVVHSIKTDDPNGIESYWHRRFENKHKNGEWYELTAEDIAAFKRRKFM"
     gene            complement(1081..2241)
                     /locus_tag="VHD88_07525"
     CDS             complement(1081..2241)
                     /locus_tag="VHD88_07525"
                     /inference="COORDINATES: protein motif:HMM:NF010039.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004357 - glutamate-cysteine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0042398 - cellular modified amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylate-amine ligase"
                     /protein_id="HVS21682.1"
                     /translation="MFDQFTLGIEEEFQIVDPETRELRSHVAEILDEGRMLLGEQIKP
                     EMIQSQIEVGTGVCKNIQEARADISNLRGIIASLAEKNGLKIAAASTHPISRWQDQKV
                     FDDERYELLIQELQTVARSLLIFGLHVHVGIADRERQIHIMNASRYFLPHVLALSTSS
                     PFWMGHNTGLKSYRSEIFKQFPRTDIPDHFDSYPNFERYVELLVKTGCINDGKKIWWD
                     CRPHPYFPTLEFRICDIPTRVDDTIAIAALFQAIVAKLTKLIEKNLGFRLYRRMLIQE
                     NKWRAVRWGLDGKMIDFGKQKEVPTKDLVRELLDFVDDVLDDLGSRKEVEHIHTILER
                     GTSADEQLRVYNETNDLKVVVDHLIDLTMENVPRDVSLTVGKTATAPSTIAK"
     gene            complement(2368..2700)
                     /locus_tag="VHD88_07530"
     CDS             complement(2368..2700)
                     /locus_tag="VHD88_07530"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HVS21683.1"
                     /translation="MADEDQSDEVSHDERRQHDRSRLIVDVHFEGGDATGVAGTKDIS
                     VGGLYLTTQARIPEGATLTLRIPLGNESVIVRADVVYSNPGHGVGVRFHRLPDEARAL
                     MERELPAP"
     gene            2964..>3797
                     /locus_tag="VHD88_07535"
     CDS             2964..>3797
                     /locus_tag="VHD88_07535"
                     /inference="COORDINATES: protein motif:HMM:NF013237.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HVS21684.1"
                     /translation="MGFATNAIHAGQEPDSATGAVSVPIYQTSTYAQEGLGKNKGFEY
                     ARTSNPTRLALERNLAALEGAQFGYAFASGMAAIDATLRLVKSGDHVIVSDNTYGGTF
                     RLFTRILSNYGIEFSFVDTSEVTNVEAAIKDNTRMVFVETPTNPVMIVTDLKAVSEVA
                     HAAGARVVCDNTFMSPYLQRPLEFGVDIVVHSTTKFLNGHSDGVGGAVVLNNEDDASW
                     IAFVQNSAGAILSPFDSWLVLRGTKTLALRMEQHDRSGRAVAAFLEDHPKVQKIYYPG
                     SP"
BASE COUNT          874 a         1038 c         1039 g          846 t
ORIGIN      
        1 tgttcgaacg gctcaagtca aacatcgaaa catttactcc ggaaggattc atcgaatcag
       61 gcgaatccta tctgcgttca ctcggcgtga cgcggcagaa ggcgcactac tgcgtgcaag
      121 tcgcgcaagc gtttaccaac ggccatttga ataagatcgg acggatgagt gacgaagacg
      181 cgcacgcaag gctgctcagc atcaaaggcg tcggtccgtg gagtgcgaac atttatcttc
      241 tcatggcgtt gaggcgtccc gacatctggc ccgacggtga tgtcgcactg gcaacagcgg
      301 tcggcaaact tcgcaggcta agcacttgtc cttctttcgt cgagctggca aagatcgccg
      361 agcgctggcg cccgtaccgc tccgttgccg cgaggatgtt gtggcagtat tatctggcgg
      421 aacgaaacgg aagcgggatt tgaaaccctt gggtaggcgc ggccctcaga aaatgtttga
      481 gagagattac ataccttgtg ttggaaaaac tcgcattgct cactcgcgag cttgggcatt
      541 tcccagtcac gggcgagttg cgaatgaaga agcgaaccga tgcgagcttt ccgaacgaca
      601 agacaattta caaattcggt tcgaaacagc aacaagcttc gcgagtgttt gagttctgtg
      661 aacagaatcc cggatacagc gatgtagctg agactcttag agctctcata gaacgagcgg
      721 agcgcaagtc gccgaagaag actgccgttg cgcaggttac tctaggcgaa gtctatcttc
      781 taaaatctgg tcggtttcac aagatcggcc gaactaatgc tgtcggtcgc cgcgaaagag
      841 aactcgcaat tcagttgcca gaaaaagcta acgttgttca cagtatcaag actgacgatc
      901 ctaacgggat tgaaagttat tggcacagac gattcgaaaa caaacacaag aacggcgaat
      961 ggtatgaatt aaccgccgaa gacatcgcgg ctttcaaacg gcgcaaattc atgtaggagc
     1021 tactacgcta agcggatcgc gaacaacgtc gttaggagac gttcggagaa tctcttcatc
     1081 ctacttcgca atcgtcgacg gcgcggtggc tgtcttgccg acggtgaggc tcacgtcgcg
     1141 agggacgttt tccatcgtca aatcaatcag gtgatcgacg acgactttca gatcattggt
     1201 ttcgttatag acacggagtt gctcatcggc tgaggtgccg cgttcgagga ttgtgtgaat
     1261 gtgctcgact tctttgcgtg agccgagatc gtcgagcacg tcgtcaacaa aatccaatag
     1321 ctcgcgcacc agatccttcg tcggcacttc tttctgcttt ccaaaatcta tcatcttgcc
     1381 atccaggccc cagcgcacag cgcgccactt gttttcctga atcagcatcc gccgatagag
     1441 acgaaagccg aggttctttt caatcagctt cgtgagcttg gcgacgatgg cctggaatag
     1501 cgcggcgatt gcgatggtgt cgtccactcg cgtcggaata tcacagatgc gaaactccag
     1561 cgtcggaaag tatggatgcg ggcgacagtc ccaccagatt ttcttgccgt cgttgatgca
     1621 gcccgtcttg accaacagct cgacgtaacg ctcaaagttg ggatatgaat cgaagtgatc
     1681 gggaatgtcc gtgcgcggaa actgcttgaa aatttccgag cgataggatt tcaaacccgt
     1741 gttgtggccc atccagaacg gcgatgaagt cgaaagcgct aaaacgtgcg gcagaaaata
     1801 gcgcgacgcg ttcatgatat gaatctgacg ctcgcgatcg gcaatgccga cgtgaacgtg
     1861 caacccgaag atcaacagcg agcgtgcaac ggtctgcagt tcctgaatca gcaactcgta
     1921 ccgttcatcg tcaaagacct tctgatcctg ccagcgtgaa atcggatgcg tcgaagccgc
     1981 tgcaatcttc agcccatttt tctcagcgag cgacgcaatg ataccgcgca ggtttgagat
     2041 atcagcccgc gcttcctgga tgttcttgca gaccccggtg ccaacttcga tctgagattg
     2101 gatcatctct ggcttgatct gctcgccgag cagcatgcgg ccttcgtcga ggatctcggc
     2161 gacgtgcgaa cgcaactccc gcgtctccgg gtcgacgatc tgaaactctt cttcgatacc
     2221 gagagtgaat tgatcgaaca tcttcaaacc aatcaagcaa gccacagagg cacagagaca
     2281 cggagatggg acaagtcaaa acagtcgtcg ttagtctctc catccatctc tgtttctctg
     2341 tgtctctgtg tctctgtggc aaaactctta aggcgccggt agctcgcgct ccatcaaggc
     2401 gcgcgcctca tccggcaagc gatggaatct taccccaaca ccgtgacccg ggttgctgta
     2461 aaccacgtct gctcggacga tgacgctctc gttgcccagc ggaatccgca gggtcaacgt
     2521 cgcaccttcg ggaatccgcg cttgagtggt caggtagaga cccccgacac tgatgtcctt
     2581 tgtgccggca acgccggttg catcgcctcc ctcgaaatga acgtcaacga tcagccgcga
     2641 acgatcgtgc tgacggcgct cgtcgtgtga aacctcgtcg gattgatctt catcagccac
     2701 tcgggggttc ctccctctca aagcgaggcg cgtgctgaga gtccgtactt ctaaacctgc
     2761 tttggagtag ttgcagatga tactcgatcc cgttccggac gggaacctga atcgatggtc
     2821 taaggaaacg atacgacttc cgcgtcgttc cgtgcggtta aaccgctgcg tcgtcaattg
     2881 acactaaaat cgcccgcagg ctaacatccg tcgttcgcaa ttctaactcc cgatttctgg
     2941 gcgccggact tttcgattct tttatgggtt tcgccactaa cgcaattcat gccggacaag
     3001 aaccggattc ggccacgggc gcggtttccg ttccgatcta tcaaacgtct acctacgcgc
     3061 aggaaggcct gggcaagaac aaaggcttcg agtacgcgcg cacgtcgaac ccgacgcgtc
     3121 tggcgctgga gcgcaacctc gccgcgttgg aaggcgcgca gtttggttat gcgttcgcgt
     3181 ccggcatggc cgcgatcgac gcgacgctgc ggctggttaa gtccggcgac cacgtcatcg
     3241 tctctgacaa cacttacggc ggaacttttc gtttgttcac gcgcatcttg tcgaactatg
     3301 gcatcgagtt ctcattcgtt gacacttcgg aagtcaccaa cgtcgaagcc gcgatcaagg
     3361 acaacacgcg catggtcttt gtcgaaacgc cgacgaatcc cgtgatgatc gttacggatc
     3421 taaaagcagt ttccgaggta gcccacgctg caggcgcgcg cgtcgtgtgc gacaacacgt
     3481 ttatgtcgcc ttacctgcag aggcctttgg aattcggggt ggacatcgtg gtgcactcga
     3541 caaccaagtt tctgaacggg cattcggatg gagtgggcgg cgcagtagtt ctgaacaacg
     3601 aagacgatgc aagttggatt gcgttcgtgc agaacagcgc cggcgcgata ctttcgccgt
     3661 tcgattcgtg gctggttttg cgcggcacga agaccttggc cctgcgcatg gaacagcacg
     3721 atcgatcggg acgcgcggtc gcggcgtttc tcgaagatca cccaaaggtg caaaagattt
     3781 attatcccgg ctcgcct
//
LOCUS       DASZZE010000391         2328 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_273439, whole genome shotgun sequence.
ACCESSION   DASZZE010000391 DASZZE010000000
VERSION     DASZZE010000391.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2328)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2328)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2328
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_273439"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(59..1228)
                     /gene="aroC"
                     /locus_tag="VHD88_07540"
     CDS             complement(59..1228)
                     /gene="aroC"
                     /locus_tag="VHD88_07540"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR00033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HVS21685.1"
                     /translation="MFRFTTAGESHGRALVAIVEGLPAGVPIDIGQINHELHRRQQGY
                     GRGGRMKIEQDRVEILSGVRHGLTLGSPLAVMIENKDWANWDEVMSVEPRDVAPEKSR
                     RVKRPRPGHADLAGGLKYDTRDLRNVLERASARETAARVACGAIAKQLLATFGVEIRS
                     HVIQLGGIPEKALELTFDQIAAIPEDSPLRCADKEAQQRMIELIDQTKSEGDTLGGVF
                     EVVARGVVPGLGSHTAWDLKLDGRLAQAVMSIPAVKAVAIGAGVEASSLPGSEVHDEI
                     GYNEETKEFIRATNRAGGLEGGVTNGEEIRVRGHLKPISTLRRALRSVDIDTKKEERA
                     AFERSDITVVPAAGVIGEAMVALVLAAAMREKFGGDSLGEMKRNFDGYREQLRGY"
     gene            complement(1283..>2328)
                     /locus_tag="VHD88_07545"
     CDS             complement(1283..>2328)
                     /locus_tag="VHD88_07545"
                     /inference="COORDINATES: protein motif:HMM:NF014910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-linked oxidase C-terminal domain-containing
                     protein"
                     /protein_id="HVS21686.1"
                     /translation="IPLPSGRVIEARLPSYRMPHVRKHASGYYVAPEMDVLDLFIGSE
                     GTLGVVVEVEVKLLPKPEKILSGVAFFENDENLLALVREVRALSLRTREKQAQTNQQI
                     VFPGRGDAESEADWPTSIGVDACALEYFDSGSLEFLRQKYETIPSQAAGAIFFEQETT
                     DDTEGDFAAAWFSVLQFHKAMLDDSWFATNEQDQAKLREFRHALPVLMNEWFARYHQQ
                     KMSTDMAVPDEEFKGMLQFYQDALRGGDLRYTIFGHIGDNHVHVNILPRDTDEAARAR
                     EIYMKFIRRAVAVGGTISAEHGIGKLKREYLRELYGEEHLREMVALKRAFDPAGILGR
                     GNMFAEELIKSSD"
BASE COUNT          483 a          697 c          616 g          532 t
ORIGIN      
        1 tgattcttgc taaccttttc cttgatattg gcaaggtcca aagcgttctc ctgaacgatc
       61 aataaccacg caactgttcg cgataaccgt caaagttgcg cttcatctcg ccgagactgt
      121 caccgccaaa cttctcgcgc atggccgcgg cgagaaccag cgcgaccatt gcttcgccaa
      181 ttactcccgc ggcgggaact acggtgatgt ccgaacgttc gaacgcggcg cgctcctcct
      241 tcttggtatc gatgtctact gagcgcagcg ctcggcgcag cgtcgagatt ggtttcaaat
      301 gaccgcgcac gcggatctct tcgccgttcg tgacgccgcc ttccagtcca cccgcgcgat
      361 tcgtggcgcg aatgaattct ttcgtctctt cgttgtagcc gatttcatcg tgaacttccg
      421 agccgggcag ggaactggct tccacgcccg cgccgattgc gactgccttc acggcgggaa
      481 tcgacatcac ggcttgagct aaacgtccgt cgagtttcaa atcccacgcg gtgtgcgagc
      541 cgagacccgg cacaacgccg cgcgcgacga cttcgaagac gcctccgaga gtgtcgcctt
      601 cgctcttcgt ctgatcgatt aactcgatca tgcgttgctg tgcttctttg tcagcgcaac
      661 gcagcggcga gtcttcggga attgcagcga tctgatcgaa agtaagttcg agtgcctttt
      721 caggaatgcc gccgagttga atcacgtgac tgcgaatctc tacgccgaaa gttgccagca
      781 gttgtttggc aatcgcgccg cacgcgacac gcgcggccgt ctcgcgcgcg gatgcgcgct
      841 ccagtacgtt gcgcaagtcg cgtgtatcgt atttcaatcc gccggcaaga tcggcgtggc
      901 cggggcgcgg gcgtttgacg cggcgagatt tctcgggcgc tacgtcgcgt ggctcgaccg
      961 acatcacctc atcccagttg gcccagtctt tgttctcaat catcacggcg agcggcgagc
     1021 ccaacgtcag accatgacgc acgccgctga gaatctcgac gcggtcctgc tcgatcttca
     1081 ttcgtccgcc gcgaccgtaa ccttgttgtc gccgatgcaa ttcgtgattg atctgcccaa
     1141 tatctatcgg aacgcccgca ggaagtcctt cgactatcgc gacgagtgcg cgtccgtgtg
     1201 attcgccggc tgtggtgaaa cggaacatta ctcgtgaatc gtaaatcgta aatcgtgaat
     1261 agtaaacgaa ggaattcgtg agctaatcgc tgctcttaat taattcttca gcaaacatgt
     1321 tcccgcgacc caggataccc gcgggatcga aagcgcgttt cagcgccacc atctcgcgca
     1381 ggtgctcttc gccgtaaagc tcgcgcagat attcgcgctt cagctttcca attccatgct
     1441 cagcggaaat cgtgccgcca actgcgacag cccgccgaat gaatttcata taaatctcgc
     1501 gggcccgcgc ggcttcgtcc gtatcgcgtg gcaggatgtt cacgtgcaca tgattgtcgc
     1561 cgatatgacc gaagatcgtg tagcgaagat cgccgccgcg caacgcgtcc tgatagaact
     1621 gaagcatccc cttgaattct tcgtcaggga cagccatgtc ggtcgacatc ttttgctgat
     1681 gatagcgcgc gaaccattcg ttcatcagca ccggaagcgc gtggcgaaac tcgcgcagct
     1741 ttgcctggtc ctgttcgttg gttgcaaacc acgagtcgtc aagcatggcc ttgtgaaatt
     1801 gcagaacgga aaaccatgcg gcggcaaaat cgccttcggt gtcgtcagtc gtttcttgct
     1861 cgaagaagat tgctcctgct gcctggcttg gaattgtttc gtatttctga cgaaggaact
     1921 ccaaagatcc gctatcaaaa tactctaaag cgcaagcatc gactccgatt gaggtaggcc
     1981 agtctgcctc cgactcggca tcgccccgac caggaaatac tatttgctga ttcgtctgcg
     2041 cttgcttctc gcgagttcgc aaagaaagag cacgaacttc ccgaactaaa gctagaagat
     2101 tctcatcgtt ttcgaagaag gctactccgc tcagtatctt ttcaggtttc ggcagcagct
     2161 tcacttccac ctcaacgacc acgccgagtg ttccttcact cccgataaag agatcaagca
     2221 cgtccatctc gggcgcgaca tagtagccag acgcatgctt tcgcacgtgc ggcatgcgat
     2281 acgacggcaa gcgcgcttca atcacgcggc cggacgggag tggaatcg
//
LOCUS       DASZZE010000392         5287 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_128969, whole genome shotgun sequence.
ACCESSION   DASZZE010000392 DASZZE010000000
VERSION     DASZZE010000392.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5287)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5287)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5287
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128969"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            190..777
                     /locus_tag="VHD88_07550"
     CDS             190..777
                     /locus_tag="VHD88_07550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21687.1"
                     /translation="MLASGSETVYKRLAAMLSEFDILRDVASRLERAEIPYMLTGSVA
                     MNYYSQPRMTRDIDLVLSLHANDGDTIVALFENDYYVDRVAVARAIANESLFNLIHND
                     AIIKVDCIIRKNSEYRRVEFERRRQVVIQHSKVSIVTKEDLIISKLFWARDSHSEFQL
                     RDVKNLLASGYDAEYLERWIRNLSLDELLKECLHE"
     gene            770..997
                     /locus_tag="VHD88_07555"
     CDS             770..997
                     /locus_tag="VHD88_07555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21688.1"
                     /translation="MNNTSPEIERKVFEMYMARSGEERFMMGIRSFDAAREIVLASLP
                     KDLPKDELKRRLFERIYGAPIEDVVKQTRDR"
     gene            1246..1893
                     /locus_tag="VHD88_07560"
     CDS             1246..1893
                     /locus_tag="VHD88_07560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21689.1"
                     /translation="MSNRLYAASRHQRSMMSISRNSHRFGASGFAFLAVLLTCSMSIA
                     QIPRKKINPTRADREAWRQVLKIPDDCEKSFQSGYGDTANFGGLEFHRLGPSQYLVGI
                     TCYGGAYQPGSIYAFYDEYNPSRTRLLKLKGFETKRHGNPLRYSLIDGFDSFNRKTKQ
                     LEVFSKYRGPGDCGLFVRYRFLRDRPVVVEAREQNCSEIGFRRHIDYRRWPRKKL"
     gene            complement(1935..>5287)
                     /locus_tag="VHD88_07565"
     CDS             complement(1935..>5287)
                     /locus_tag="VHD88_07565"
                     /EC_number="4.1.1.71"
                     /inference="COORDINATES: protein motif:HMM:NF008907.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004591 - oxoglutarate dehydrogenase
                     (succinyl-transferring) activity [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="multifunctional oxoglutarate
                     decarboxylase/oxoglutarate dehydrogenase thiamine
                     pyrophosphate-binding subunit/dihydrolipoyllysine-residue
                     succinyltransferase subunit"
                     /protein_id="HVS21690.1"
                     /translation="QKPDREGGSSKASYTHLIAWAIVHALAEFPQLNDGFEIVADQPS
                     RVRRESVNLGIAIDLEKKDGTRTLLVPNIKNATALDFSQFLDAYDDIVKRARAGKLQI
                     PDFQNTTISLTNPGTIGTVASTPRLMAGQSVILATGAIEYPAEYQAMAQEALSQLGIS
                     KAITISSTYDHRIIQGAESGAFLARVHELLIGKHRFYDNVFADLGIPHAPMRWAIDRN
                     PFLLGADETRAQTIKQAAVIELINAYRVRGHLIADIDPLHAMPRLDHPELDIQTYGLT
                     IWDLDREFISAGLGGVESATLREILDILRRAYCGKVGIEYRHIQSKEEKLWLREQIRH
                     EFAQPEPISLEIKKQMLWKLISAEQFERFLGTKYLGQKRFSLEGCETIISLLDQLIER
                     AADLGVEDITLGMAHRGRLNVLANVIGHSCERIFTSFEGSIHPSFPADEGDVKYHQGA
                     TGERVTASGKNVHLTLSPNPSHLEAVDPVVEGMTRARQDAMIEECDLPRPEAMNRALP
                     VLLHGDAAFAGQGIVMETLQLAQLKGYRTGGTIHIIINNQIGFTTSPEAGRSSIYSTD
                     VARMTQLPIFHINGEDPDAVYRALRIALDYRQQYKKDIVLDVVGFRKLGHNESDEPSY
                     TQPLMYQRVKEHPGVRAKYAQQLIREGVIDEAGVDQLIEERVRRYEDAQARAKEIAAT
                     TKASEAPAPSVAELDGSELIETGVDVDVIKKIARQIAVVPEAFNLNPKMVGQLARRAK
                     MGEGTQPLDWAFAEAMAFGSLALEGARVRLSGQDSGRGTFSQRHAVLYDTQTGQLWAP
                     LSELRSEENPFGRFEVFDSSLSEAGVLGFEYGYSVVAQDALVMWEAQFGDFGNVAQEI
                     IDQYIAASEDKWKQTSRLTLLLPHGYEGQGPEHSSARLERYLQLCAENNLQVCYPTTP
                     AQYFHLLRRQVRPGFERPLIVMTPKSLLRLPAAASSLDQLTSGGFQPIIADAEVNDPG
                     RVERIVLCSGKVFYDLNEARKKVRGGSPTERSRGGSPTVREGANNSDEDRLAIIRIEQ
                     FYPFPQRALTEALAGYANAKELVWCQEEPKNMGGWTFMESRLENLLSRCERPRYVGRE
                     ASASPATGSYAIHVQEQERLVREALTIS"
BASE COUNT         1139 a         1470 c         1438 g         1240 t
ORIGIN      
        1 gcaaaaacaa aactgccatc gcgcgaagcg tcacgcgcca ataccgctcc ccaaaaatcc
       61 gcgttaccat tctccgccat gtttgctgac aactgtaaca tcatttcacg tcattcagtt
      121 ttgatgaggc aatgataaag acagcatgaa aatgaatcta tccgaagttt gcggtcaaac
      181 ttttcccaca tgctggcaag cggttccgaa acagtgtata agcgactggc cgccatgttg
      241 agcgaatttg atattcttcg ggacgttgcc agcaggctcg aacgagctga gattccttac
      301 atgctgaccg ggtcagtcgc gatgaactat tattcgcagc cccgcatgac gcgtgacatc
      361 gacctcgtgt tatcactgca tgcaaacgac ggtgacacaa tcgtcgcgct attcgagaac
      421 gattactacg tcgatcgagt cgccgtcgcg cgggccatag cgaatgaatc actctttaat
      481 ctcatccaca atgacgcaat catcaaggtt gattgcatta ttagaaagaa ctcggagtat
      541 cgccgagttg aatttgaacg gcgcagacag gtcgtaatcc agcattctaa ggtctcgatt
      601 gttaccaaag aggacttgat catttccaag ctcttctggg ccagagattc gcattcagag
      661 tttcagttgc gcgacgttaa gaatctgcta gcgtccggct acgatgcgga gtatcttgaa
      721 cgatggattc gcaacctcag tcttgacgag cttttgaagg aatgtttgca tgaataacac
      781 ctctccagaa attgagcgga aggttttcga gatgtacatg gcgcgttcgg gcgaagaacg
      841 tttcatgatg ggcattcgat cattcgacgc cgcgcgcgag attgtactcg cttcgctgcc
      901 aaaggacttg cccaaagacg aacttaagcg ccggttattc gagaggatct atggcgcgcc
      961 gattgaggat gttgtgaaac agactcgtga tcgttagcga gcggggcaga agcctgcgcg
     1021 tcagcaaggg cgctgcgcgc tctctgcggg cgagacgccc gcgctcccag cgaggagact
     1081 tgatgaagat agcgctcaaa tgcggtgtcg ccgtgactgt cacggtggcg ctgaacagga
     1141 aggtgagaca agctatatga aagccttcct gggatcgtca atagtctttg cgctttttgg
     1201 gacagtcctt tcagcgatca tcgcgctgat tttgagaaga cgttgatgag taatcggctg
     1261 tatgcggcct ctcgtcacca acgctctatg atgagtatct ctcgcaattc tcatcgattc
     1321 ggtgccagcg ggttcgcgtt tctagcggtg cttctgactt gctcgatgtc gatagctcag
     1381 attccccgta agaaaatcaa tccaacgagg gccgacagag aagcgtggcg tcaggttctc
     1441 aagatacccg atgattgcga aaaatcattc caatctggtt acggcgacac tgcaaatttc
     1501 ggagggcttg agtttcaccg tttgggtccc agtcaatatc ttgtcggcat cacctgctac
     1561 ggtggtgctt atcaaccggg ctccatttac gctttctatg atgaatataa tccttcaagg
     1621 acacgacttc tgaaactcaa gggattcgaa actaaacgtc atggcaatcc gcttcgatac
     1681 tcgctgattg atggattcga ttccttcaac cggaagacca aacagctgga agtattctcg
     1741 aagtatcgag gcccgggcga ttgtggtttg tttgttaggt acagatttct ccgcgaccgc
     1801 cctgtagttg tagaagcccg agagcaaaac tgtagtgaga ttgggtttcg tcgtcacatt
     1861 gattatcgcc gttggccacg caagaaattg taacgggcgt gtttccaacg agagcgtcgc
     1921 ttagcaacgt caactcagct gatcgtcagc gcctctcgca ccaaacgctc ttgttcctgc
     1981 acatgaatcg cgtagctgcc ggtggccgga ctggctgatg cctcgcgccc cacatagcgc
     2041 ggacgctcgc agcgtgacag caaattctcc agacgcgatt ccatgaacgt ccagccgccc
     2101 atgttctttg gttcttcctg gcaccacacc aattctttcg cgttcgcgta acccgcgagc
     2161 gcttcagtca gggctctctg cgggaacgga tagaactgtt cgatgcgaat gatggccagg
     2221 cgatcctcat cagagttgtt tgcgccctcc ctcacggtcg ggcttccgcc ccgtgatctc
     2281 tcagtcgggc taccgccccg tactttcttt cgcgcttcat tcagatcata gaagaccttg
     2341 ccgctgcaca aaacgattcg ttcgacgcga ccaggatcgt ttacttctgc atcagcgatg
     2401 attggttgga atccgccgct cgttaattga tcgagcgaag atgcggccgc cggcagacgc
     2461 agcaaactct ttggcgtcat cacgatcagc ggtcgctcaa aaccaggtcg cacctgacgc
     2521 cgcagcagat gaaaatattg cgcaggcgtc gtcgggtaac agacctgaag attattctcg
     2581 gcgcaaagtt gcagatagcg ctccagccgc gcgctggaat gttccggtcc ctgaccttca
     2641 tagccatgag gcagcaacaa cgtcagccgc gaagtttgtt tccatttgtc ttcgctggcc
     2701 gcgatgtatt gatcgatgat ctcctgcgcg acgtttccga aatcgccgaa ctgcgcttcc
     2761 cacatcacca acgcatcctg agccacaacc gagtaaccat attcgaatcc gagcacgccg
     2821 gcttccgaaa gcgagctgtc aaatacttcg aaacggccaa acggattttc ttcggagcgt
     2881 aattccgata gcggcgccca caactgaccc gtctgcgtgt cgtaaagaac ggcgtggcgc
     2941 tggctgaatg ttccgcggcc ggaatcctgt ccgctcagac gaacgcgtgc gccttcaagg
     3001 gcgagcgagc cgaaggccat tgcttcggcg aatgcccaat cgagaggctg agtgccttcg
     3061 cccatcttcg cgcggcgcgc gagctgaccc accattttcg gattcagatt gaaagcctcg
     3121 ggcacgacag cgatctgtcg cgcaattttc ttaataacgt ccacatcgac gccagtctcg
     3181 atcagttcag aaccgtcaag ttcagccacc gacggtgcgg gtgcttcaga agctttggtc
     3241 gtggcggcga tttccttcgc gcgcgcttgc gcatcttcgt aacgacggac gcgctcttca
     3301 atcagttgat cgacgccggc ttcatcaatt acgccttcgc gaatcagttg ctgcgcatac
     3361 ttggcgcgca cgccgggatg ttctttgacg cgttggtaca ttagtggctg cgtgtagctc
     3421 ggctcatcag attcgttgtg acctaacttt cgaaatccaa ctacgtccag cacgatgtct
     3481 ttcttgtact gctgtcgata gtccaaagcg atgcgcagag cgcgatagac cgcgtcggga
     3541 tcctctccgt tgatgtgaaa gatgggaagc tgcgtcatgc gcgccacatc ggttgaatag
     3601 atcgaggagc gcccggcttc cggcgaggta gtaaatccga tttgattatt gatgatgatg
     3661 tgaatcgtgc cgccggtgcg atagcctttg agctgcgcga gttgcagcgt ctccatcacg
     3721 atgccctggc cggcgaacgc cgcatcgcca tgcagcagca ccggcagcgc gcgattcatt
     3781 gcttccggtc gcggaagatc acattcctca atcatcgcgt cctgccgcgc gcgcgtcatg
     3841 ccttcgacga cgggatcgac agcttccagg tgacttggat ttggcgagag cgtcagatga
     3901 acattcttgc cgctcgcagt tactcgctcg ccggttgcgc cctgatggta tttcacgtcg
     3961 ccttcatccg cgggaaacga tggatggatc gagccttcga acgacgtgaa gatgcgttcg
     4021 caggaatgac cgatgacgtt cgccagcacg ttcagccggc cgcgatgcgc cattcccagc
     4081 gtgatgtcct cgacaccaag gtccgcggcg cgctcgatca gctgatcgag caaagagatg
     4141 atcgtctcgc agccttcgag cgaaaacctt ttttggccaa gatacttcgt gcccagaaaa
     4201 cgctcgaact gctccgctga gatcagcttc cagagcatct gctttttgat ctcaagcgaa
     4261 attggctcag gctgagcgaa ctcgtgccga atttgctcgc gcagccaaag tttttcttct
     4321 ttgctctgaa tgtgccggta ctcgatccca accttgccgc agtatgcgcg ccgtaggatg
     4381 tccagaattt cgcgaagcgt cgcgctttcg acaccgccga gtccggcgct gatgaactcg
     4441 cgatcgaggt cccagatcgt cagcccgtag gtttgaatat ccagctcggg atgatcgagc
     4501 cgcggcatcg cgtgcagcgg atcgatatcc gcgatcagat gaccgcgcac gcgatacgcg
     4561 ttaatgagct cgattaccgc agcttgcttg atcgtctgcg cgcgcgtttc gtccgcgccg
     4621 agcaaaaacg gattgcggtc gatggcccaa cgcatcggcg cgtgcggaat gccaagatcc
     4681 gcaaagacgt tgtcatagaa acggtgttta ccgatcagca actcgtgaac acgcgcgaga
     4741 aacgcgcccg attccgcgcc ttgaataatg cgatgatcgt aggtgctgct gattgtgatt
     4801 gctttgctga tgccaagctg cgacaaggct tcctgcgcca tcgcctgata ttcggctggg
     4861 tactcgatcg cgccggtggc gaggattacc gattgcccag ccatcaggcg cggcgtcgaa
     4921 gcgaccgtgc cgatcgttcc gggattcgtg agcgagattg tcgtgttttg aaagtcggga
     4981 atttgcagct tacctgcgcg cgcgcgtttg actatgtcgt cgtaggcatc gaggaactga
     5041 gaaaagtcca aggcggttgc gttcttgatg ttcggcacca gcagcgtgcg cgtgccgtct
     5101 ttcttttcca gatcgatcgc aatgcccagg ttcaccgatt cgcgacggac gcgcgacggt
     5161 tggtccgcga ctatttcaaa gccgtcgttg agttgcggga actcggcgag cgcatgcacg
     5221 attgcccacg cgatcaggtg cgtgtaagaa gctttgctgc tccctccctc acggtcgggc
     5281 ttctgcc
//
LOCUS       DASZZE010000393         5596 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_209617, whole genome shotgun sequence.
ACCESSION   DASZZE010000393 DASZZE010000000
VERSION     DASZZE010000393.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5596)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5596)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5596
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_209617"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..947
                     /locus_tag="VHD88_07570"
     CDS             <1..947
                     /locus_tag="VHD88_07570"
                     /inference="COORDINATES: protein motif:HMM:NF042649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HVS21691.1"
                     /translation="NASSRIKKGIGFASFMHGAGFTGSGEVFLQSVVGAEATPEGRVK
                     ILAASTEIGQGTNTIFAQIAAEALGVDYDLVEVSQPDTANVPNSGPTVASRTCMIVGK
                     LVESAVLGLKQTLVGSGLLKDQFTQTEFQKACGEYITKFGPLRFFSKYNPPPNIYWDD
                     EKYQGDAYGAFAWAVYVAEVSYDPLTYEAHVDDFVAVQEVGRVINPVLAAGQIEGGVA
                     QAIGMTLYENVVWENGRMKNGQMTNYIMPTAADIPPIRVYFEENPYAYGPAGAKGIGE
                     LPMDGPAPAILNAIENATGESFNHIPLMPEAMIEASAA"
     gene            1013..1486
                     /locus_tag="VHD88_07575"
     CDS             1013..1486
                     /locus_tag="VHD88_07575"
                     /inference="COORDINATES: protein motif:HMM:NF013923.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HVS21692.1"
                     /translation="MPEKVKISCTVNDEQRTLHAFPIERLLDVLREQLSLTGTKEGCG
                     EGECGACSVMIDGQIVNSCLVPVAQVEGASIQTIEGIALGENQLHDVQQAFIECGGAQ
                     CGICTPGMVMAAVNLLEKNPNPNEAEIRNGLAGNLCRCTGYIKIVESVIRACRNS"
     gene            1498..1971
                     /locus_tag="VHD88_07580"
     CDS             1498..1971
                     /locus_tag="VHD88_07580"
                     /inference="COORDINATES: protein motif:HMM:NF020419.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyl transferase AbiEii/AbiGii toxin
                     family protein"
                     /protein_id="HVS21693.1"
                     /translation="MIELIDEFRSLIAALKEHQIDYALCGGMAMAVHDRPRMTIDIDL
                     LIQAESLERVMAIASVLGYKIRGKDLSFANGAVEIRRISKVDPESGDLLSLDLLLVTP
                     QIRMSWDSRVTSEWEGGTLSVVSRAGLIALKQLRGSGQDLDDIKALEEGERDAQG"
     gene            1958..2128
                     /locus_tag="VHD88_07585"
     CDS             1958..2128
                     /locus_tag="VHD88_07585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21694.1"
                     /translation="MPKVDMSAAAVTTRLKRVSQLRRLGLSLQKAKIKRKADGDEHAN
                     ESSSKSDKRKKG"
     gene            2125..2991
                     /locus_tag="VHD88_07590"
     CDS             2125..2991
                     /locus_tag="VHD88_07590"
                     /inference="COORDINATES: protein motif:HMM:NF013134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein subunit M"
                     /protein_id="HVS21695.1"
                     /translation="MRAYVPSYQLISPASLGDALDVLARDESTWKPFAGGTDLMVLLE
                     AGKLPHKNYINIWSLKELRGIEVTDAHVTLGGLTTYTEVQNHDVVREEFPMLCQAAKE
                     TGGIAIQNRGTLGGNIVNASPAADSPPALLAYDAELELVSANGTRRVPYKDFHLGYKQ
                     MNIRADELLRGIRLPRATKKLTHYYRKVGTRKAQAISKTCFAAVGRVTDDRIAEVRIA
                     LGSVAPVPLRCVQTESALRNKVIDEHTMAAAKAALAAEISPIDDLRSTRDYRLKVSLN
                     LLEDFVRQLSLR"
     gene            3011..4210
                     /locus_tag="VHD88_07595"
     CDS             3011..4210
                     /locus_tag="VHD88_07595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HVS21696.1"
                     /translation="MNLIAHVAKNSIVAIAAIVFISCAASYGQNPPSNPNDKSAERRL
                     NMLVLGDSIMWGEGLKDEHKAWYQVKVWLNRTAGREVREKIEAHSGAVVGSVGDPPAN
                     SVTPFDGEVNSAVPSVNDELDMAVKSYADPSQVDLVLVDGCVNDVGVFNLLNGGNSTE
                     EIDKLASSRCGPPMRALLKRVADAFPSAHIIVTGYFPIISEKTPDSLLMRAVAKLFYR
                     SSPGASKVNSNQLRERLVANSRFWYQASNAALADAVRHTNDEIATGRPRQRVLFVQIP
                     FPPEYSFAAKETRLWSFNASFLRKLLAIITLGKISLRTNDEQRRQRIASCDDFYKRPA
                     NEDKQQKQTRELRRMLCYYASIGHPNRKGALIYSQAIIDQVKSAIGDAGWLRDLGPVT
                     VPNSPVR"
     gene            4298..5044
                     /locus_tag="VHD88_07600"
     CDS             4298..5044
                     /locus_tag="VHD88_07600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21697.1"
                     /translation="MDPNPTQFNSGVVAPVECLKEGWALIKDQYWLFLGITVVGILIG
                     GAVPIVLLGPMMAGIFLCLFQKLRRQPVEFGMLFKGFDYFVQSLIVAVIKILPIVVLM
                     VPFYIIMFGVIMTTMPRGRANPEEASSFMFTFFGLEMVFVLVMMVVGILIEIFFMFAF
                     PLVADRNLSGLDAVKLSFKAGKANFGGVLGLLLLNAGLGIVGVLCCFVGVYFVMPVMF
                     ASYAVAYRRVFPEVTQTFASPPPPPSSWAA"
     gene            5051..>5596
                     /locus_tag="VHD88_07605"
     CDS             5051..>5596
                     /locus_tag="VHD88_07605"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HVS21698.1"
                     /translation="MSECDFVIRGRRVVTENSVGPASVHVSDGRIAGVKAFDDVPSDC
                     DVVEGSEHSVVMPGLVDTHVHVNEPGRTEWEGFATATRAAAAGGVTTIVDMPLNCIPA
                     TTTLDGLKEKLEAASGKCSIDVACWGGVVPGNTSELSKIWNAGVVGFKCFLVHSGVDE
                     FPNVTEKDLREAMPELARLGAT"
BASE COUNT         1266 a         1414 c         1669 g         1247 t
ORIGIN      
        1 agaatgcttc atcgcgcatc aagaaaggca tcgggttcgc ttcgttcatg cacggcgcgg
       61 gatttaccgg ctcaggcgaa gtcttcctgc aatcggtggt cggcgcggag gcgacgcctg
      121 agggccgcgt caaaattctc gctgccagca cagagattgg ccagggcacg aatacaatct
      181 ttgcgcagat tgcggctgag gcacttggcg ttgactacga tctggtcgaa gtaagtcagc
      241 ccgacactgc caacgtcccc aacagcgggc caactgttgc gtcgcgcacg tgcatgatcg
      301 tcggcaagct ggttgagtca gccgtgctcg gtttgaaaca gacgctggta ggtagcggct
      361 tgttgaaaga tcagttcacg cagactgagt ttcaaaaagc ctgcggcgaa tacatcacga
      421 agtttggtcc gttgagattc ttcagcaaat acaacccgcc gcctaacatt tattgggacg
      481 acgagaaata tcagggcgat gcgtacggcg cgtttgcgtg ggcggtttac gtcgcggagg
      541 tttcgtatga tccgctgacg tacgaagcgc acgtagatga tttcgtagcc gtgcaggaag
      601 tcggtcgcgt aatcaatccg gtgctggccg ccggacagat cgaaggcggc gtcgcgcaag
      661 caatcggaat gacactttac gaaaacgtcg tttgggaaaa tgggcgcatg aaaaacggcc
      721 agatgactaa ctacatcatg ccgaccgcgg ccgacattcc accgattcgc gtttactttg
      781 aagagaaccc ttacgcttac gggccagccg gcgcgaaagg catcggcgag ttaccaatgg
      841 atggccccgc gccggcgatc ttgaacgcca tcgaaaatgc gactggcgag agtttcaatc
      901 acattccgtt gatgccggaa gcaatgattg aagcatctgc agcatgagaa agaaaattct
      961 taacgcagag ggcgcgaagg atttcgcgga ggagcgcaga ggaagacgtc tagtgcctga
     1021 gaaggtaaag attagttgta ctgtgaacga cgagcaacgg acacttcatg cttttcccat
     1081 agaacgtctg ctcgacgtgc tgcgcgaaca gttgagtctg actggaacca aagaaggctg
     1141 tggtgaaggc gagtgcggcg cgtgcagtgt catgatcgac ggccagatcg tgaacagttg
     1201 tctggtgccc gtggctcaag tcgaaggcgc ttcgattcaa accatcgaag ggatcgctct
     1261 gggcgaaaat caattacatg atgtccagca agcgttcatc gaatgcggcg gcgcgcagtg
     1321 tggcatctgc acaccgggca tggtgatggc cgctgtcaat ctgctcgaga agaacccaaa
     1381 tcctaatgaa gcagagattc gcaacggact ggccgggaat ctatgtcgct gcacgggcta
     1441 tataaagatt gtcgaatccg tcatccgggc ctgccggaat agttgatcga gtcgaacatg
     1501 atcgagctta ttgatgagtt tcgaagtctg atcgcggcgc tcaaagagca tcagatcgat
     1561 tacgcgttgt gtggcgggat ggccatggcc gtgcatgacc gaccgcgaat gacgatcgat
     1621 atagatttgc tgattcaagc agagtcgttg gagagagtga tggctatcgc gtcagttctg
     1681 ggttacaaga ttcgtggcaa agatctgagt ttcgcaaacg gcgcggttga aatacgccga
     1741 atctcgaagg ttgatcctga atcaggcgat ctgctgtcgc tggatctgct tttggttacg
     1801 ccccaaattc gtatgtcgtg ggattctcgc gttacatcag aatgggaagg cggaacactt
     1861 tcagtagttt cgcgagctgg cttgatcgct ctgaaacagc tcagagggag cgggcaggat
     1921 ttggacgata tcaaagcttt ggaggaagga gagcgagatg cccaaggttg acatgtccgc
     1981 cgccgccgtc accaccaggt tgaaacgcgt gtctcaactt cgccgactcg gcctgtcatt
     2041 acagaaggcg aagatcaaac gaaaggctga cggagacgag cacgctaacg aatcgtcttc
     2101 gaaatcggat aagcgaaaaa agggatgaga gcgtacgttc catcttacca attgatttca
     2161 cccgcgagtt tgggtgacgc cctcgacgtg ctcgcccgcg atgaaagcac gtggaaacct
     2221 ttcgcgggcg gcacggactt gatggtcctg ctcgaagcgg gcaagctgcc gcacaaaaac
     2281 tacatcaaca tctggagcct gaaggaactg cgcgggattg aggtcacaga cgcgcacgtc
     2341 accctcggcg ggttgacgac ttacacggaa gttcaaaatc acgacgtggt gcgcgaagag
     2401 tttccgatgc tctgccaggc cgcgaaagaa accggcggca tcgcgatcca gaatcgcggc
     2461 acgctgggcg gcaatatcgt gaatgcttca ccagcagcgg attcgccgcc ggcgttgttg
     2521 gcctacgacg ctgagctgga actggtttcc gctaacggaa cgcggcgcgt tccttacaaa
     2581 gactttcacc tcggctacaa acagatgaac attcgcgcgg acgaactact gcgcgggatt
     2641 cgcttgccgc gggccacgaa aaaactgacg cactactatc gaaaagtcgg cacgcgcaag
     2701 gcgcaagcca tttcaaagac ttgcttcgcg gcggttgggc gagtcaccga cgatcgcatc
     2761 gcggaagttc gcatcgcact cggcagcgta gcgcccgttc cgcttcgttg cgtgcagact
     2821 gaaagcgcgc tgcggaacaa agtgatcgac gagcacacca tggccgctgc caaagccgcg
     2881 ctcgcggccg agatttctcc cattgacgat ctgcgctcga ccagagacta ccgtttgaaa
     2941 gtttcgctca acctgctgga agacttcgtt cgtcaactaa gcttgcgcta gaatctgcaa
     3001 cgagtccccg atgaatctca tcgcgcacgt ggcaaagaat tcgatcgttg cgattgcggc
     3061 gatcgtcttc atctcgtgtg cagctagcta cggacagaat ccgccgtcaa acccgaacga
     3121 caagtcagcc gagcgccggc tcaacatgct tgtcctcggc gactcaataa tgtggggcga
     3181 ggggctgaag gacgagcaca aggcctggta tcaagtgaag gtctggctga atcgaaccgc
     3241 cggtcgggag gtgcgagaaa agatcgaggc tcactccgga gccgtagtcg gctcggtcgg
     3301 ggacccgccg gcaaattccg tgacgccttt tgatggcgaa gtgaatagtg ctgtgccaag
     3361 tgttaacgat gaactggaca tggccgtgaa atcttacgcc gatccctcgc aggttgattt
     3421 ggtgctggtg gacggttgcg taaatgacgt tggcgtcttc aatcttttga acggcggaaa
     3481 ttccaccgag gagatcgaca agttagcatc gagcagatgc ggaccgccga tgcgggcgct
     3541 gctcaagcga gttgccgacg cgtttccgag tgctcacatc atcgtcacag gttactttcc
     3601 gatcatttcc gaaaagacac cggatagtct gctgatgaga gccgtggcca agttgttcta
     3661 tcgatcatcg ccgggggctt cgaaggttaa tagtaatcag ttacgcgaaa gactggtggc
     3721 caattctcga ttctggtatc aggcttcgaa tgctgctttg gcggatgcag tgcgtcatac
     3781 gaatgatgag attgcgactg ggcgcccacg acagcgggtg ttgttcgttc agattccctt
     3841 tccacccgag tattcgttcg ccgcgaagga aacgcgtctg tggagtttca acgcttcgtt
     3901 cctccgaaag cttctggcga taatcacgct gggaaaaatt tctttaagga ccaacgacga
     3961 acagcgaagg cagcggattg ctagttgcga cgatttctat aagcgaccag ccaacgaaga
     4021 caagcaacaa aagcagacca gggagcttcg gcgcatgctt tgttactatg cgtcgattgg
     4081 gcatccgaac cgcaaaggcg cgctgattta ctcgcaggca atcatcgatc aggttaaatc
     4141 agcaatcggc gacgccggat ggcttcggga cttaggccct gttactgtgc ccaacagtcc
     4201 tgttcgttga tcgtcggcgg attgatgtgg ctattgcgcg ccgggcgcgc gcatgataaa
     4261 tgtcgcctgc atggcgcgat aacggaggac gaacgcgatg gatccaaatc ccactcaatt
     4321 caacagcggc gttgtggcgc cggtcgaatg tcttaaagaa ggatgggcgc taatcaagga
     4381 tcagtactgg ctgtttctcg gaatcactgt ggttgggatt ttgattggcg gcgcggttcc
     4441 catcgtcttg ttgggaccca tgatggccgg cattttcctt tgcctatttc aaaaactgcg
     4501 tcgccagccg gtcgaattcg gcatgttgtt caaagggttc gactatttcg tccaaagtct
     4561 gatcgtcgcg gtaatcaaaa tacttccgat cgtagtattg atggtgccgt tttacatcat
     4621 catgtttggc gtgattatga cgaccatgcc tcggggtcga gcgaatccgg aagaggcctc
     4681 gagctttatg ttcacgttct ttggacttga gatggtcttt gtcctggtga tgatggtcgt
     4741 tggcatcctg atcgagattt ttttcatgtt cgcttttccc ttggttgcgg atcgaaatct
     4801 gtcaggactt gatgcggtaa agctcagctt caaagccggc aaagcgaact ttggcggcgt
     4861 tctcggcctg ctgttattga atgctggtct cggtattgtt ggcgtgcttt gctgcttcgt
     4921 cggagtgtat tttgtcatgc cggtcatgtt cgcgtcgtac gcggtcgcat accgccgcgt
     4981 ttttcctgaa gtcacccaga ccttcgcatc gcctccgcct ccgccttcat cgtgggctgc
     5041 ttagaaaaga atgtcggaat gtgatttcgt gattcgcggg cgccgggtcg tgactgagaa
     5101 ttcagtcggc ccggcgtccg ttcatgttag cgacggtcgt atcgcgggtg ttaaagcatt
     5161 cgacgatgtt ccttctgatt gcgatgtagt tgaaggaagc gaacactccg tggtgatgcc
     5221 gggactcgtg gacacgcacg ttcacgttaa cgagccggga cgaactgagt gggaaggttt
     5281 cgcgacggcc acacgcgcgg cggcagccgg cggagtcacg acgatcgttg acatgccgct
     5341 caactgcatt ccggcgacga ctacgcttga cggtttgaaa gaaaagttgg aggcggcgag
     5401 cggcaagtgt tcgattgacg tcgcgtgctg gggcggcgtc gtgccgggaa atacgagcga
     5461 gctttccaaa atctggaacg ccggcgtcgt cggcttcaaa tgttttctgg ttcattcggg
     5521 cgtggatgaa tttcccaacg tcacggaaaa ggatctgcga gaagcaatgc cggaactcgc
     5581 gcggctgggc gcgacg
//
LOCUS       DASZZE010000394         4886 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_155358, whole genome shotgun sequence.
ACCESSION   DASZZE010000394 DASZZE010000000
VERSION     DASZZE010000394.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4886)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4886)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4886
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155358"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2211
                     /locus_tag="VHD88_07610"
     CDS             <1..2211
                     /locus_tag="VHD88_07610"
                     /inference="COORDINATES: protein motif:HMM:NF012471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M14 family metallopeptidase"
                     /protein_id="HVS21699.1"
                     /translation="KYKAIQTRLADPRKVVGDAERDQLVRDGKTVVVISCSIHSTEIV
                     ASQMSMQLAYNLASANDDDTLAILHNVILILIPSPNPDGVDIVANWYRKTLGTPFEGR
                     DPPELYHHYAGHDDNRDWFMLDLKETKAVTRLLWKEWFPEIVYDIHQQGSNGSRFFVP
                     PFYDPPNPHIAPLLLRQAGLIGHKMAADVTAAGFRGILTNALYDTWWHGGFRTAPYFH
                     NAIGILTEAASARIMTPSNVTTDQLARGGTRGMRTALDVTTNFPEPWPGGAWHPRDIM
                     QMELIASHSVLSLAANYRTDYLRNFYELGKAGLAAIPEGGPVAYLIPAGQGRDENVAK
                     MIGALVEQGVAVYRLDRELHGITGFQYLQTLPGAGERGAPVRKVQILMRITGQVPEIP
                     AGSYAIFLNQPYRQNVLALFEPQIYPDRITPTGEAERPYDVAGWTLPMQMGVEGLAVM
                     SIREAANERKLTLIKNENDVRKDLGLPLWTSDKSPISNPVKPGVRIGVYQSTRGNMDE
                     GWTRYVFDTFNVPYQSLRDPAINETNLRANYDAIVLPSDRTREPADSSTPAAEAGAGI
                     SDKGFVNLARFVDDGGTLICFDGSCGALIKQWKLPLRNVLEGLRSSEFYCPGSILRIN
                     VDTSKPIARTMSKDVDAYFINSSAFELADSPPHRTFLGPAPPPKVDVIARYAKENVLR
                     SGWLLGEDKIKDRVALAEVTMGKGRIVLFAFRPQHRGQTWGTFPFIWNAINSGQ"
     gene            2482..3846
                     /locus_tag="VHD88_07615"
     CDS             2482..3846
                     /locus_tag="VHD88_07615"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HVS21700.1"
                     /translation="MKRIIALVLLGSFAGVLAQTASAQSRPRRVGQTQTRQQQDQQSQ
                     PQPSSDDASQASRSSRPPVLGGANRNPNEQRPSSTSSQNAGPEEVSEGDIVRVNTTLV
                     SIPVSVMDRDGKYIPNLRKEDFRIWEDGVGQQVAYFASTEKPFTVALLIDTSGSTRFK
                     LEEIQDAAIAFVNQLRADDRVMIVSFNDKIRVLTPQPTNDRAMLRNAIRQTEAGSGTR
                     LYDAVDQVINQQFNRIEGRKAIVLFTDGVDTTSKHASYESTVRDAEELDALIYPVEYD
                     TYSDMGILGPGGGGGGWPGGGQSSGSILIDILGGIFGGGGNGGGGSYPGGGRRGGRGG
                     GSGGGGSGNSRDEYERADRYLHDLARVTGARLYNAGQQNLDYAFRSVAEELRRQYSLG
                     YYPKKAPQPGERRSIKVRVNRPELAVRARDSYVFQPGANSAAQQTNSQPKPPVLKKEL
                     RGTF"
     gene            complement(3932..>4886)
                     /locus_tag="VHD88_07620"
     CDS             complement(3932..>4886)
                     /locus_tag="VHD88_07620"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HVS21701.1"
                     /translation="RDWRIDTLLILSGDHLYRMDYKKFLARHYETDADVTVSVIPVPP
                     EGASEFGLLKTDDAGRIVEFSEKPKGDALEAMRVDTAALGLTAAEASTRPFLASMGIY
                     VFKYERLEQLLREDTTHMDFGREVIPGSIDRYNVQAFLFNGYWEDIGTIGAFYKANLD
                     MTTAIPPFNLFDAEAPMFTRARYLPPSKINKCEILESIISEGCIINGAKINHSLIGLR
                     SRLGEGVQLEASYMMGADYYQTLEDMQADRATGRPWIGVGEGSIIRRAIIDKNARIGA
                     QVKLLNEAGAENADGPDGSYYIRDRIIIVPKNGTIADGTVV"
BASE COUNT         1046 a         1414 c         1378 g         1048 t
ORIGIN      
        1 aagtacaaag ccattcaaac gcgtctggca gacccgcgca aagttgtagg tgacgcagaa
       61 cgcgatcagc tagttcgcga cggcaagact gtcgttgtta tctcatgctc gattcattcg
      121 actgagattg tcgcttcgca aatgtcgatg cagcttgctt acaacctcgc tagcgcgaac
      181 gacgacgaca cgctcgcgat cctgcacaat gtcattctga tcctgattcc ttcgccgaat
      241 cccgacggtg tggacatcgt cgcgaactgg tatcgcaaga cgctcggcac gccgttcgaa
      301 ggccgcgacc cgcccgagct ttatcatcac tacgccggcc acgacgacaa tcgcgattgg
      361 ttcatgcttg atctgaaaga gaccaaggcc gtgacgcgtc tgctgtggaa agaatggttt
      421 cccgaaatcg tttacgacat tcatcagcag ggctcgaacg gttcgcgatt cttcgtgccg
      481 ccattttacg atccgccgaa tccgcacatc gcgccgctct tgctgcgaca ggctggtttg
      541 attggccaca agatggctgc cgacgtgacg gccgcgggtt ttcgcggcat cttgacgaac
      601 gcactttacg acacctggtg gcatggcggc tttcgcaccg cgccttactt tcacaacgcg
      661 attggaattc ttaccgaagc agccagcgcg cgcatcatga cgccgagcaa cgtcacgacc
      721 gaccagcttg cgcgcggcgg cacgcgcgga atgcgcacgg cgttggatgt gacgacgaac
      781 tttcctgagc cgtggccggg cggcgcgtgg catccgcgtg acatcatgca gatggaactg
      841 atcgcgtcgc attcggtgct gtcgcttgcg gcaaactatc gaactgatta cctgcgcaac
      901 ttttatgaac ttggaaaggc gggcctcgct gctattccgg aaggcgggcc cgtcgcatac
      961 ctgattccgg cgggtcaggg acgcgacgaa aacgtcgcga agatgatcgg cgcgctcgtc
     1021 gagcaaggcg tcgcagtcta tcgcctcgat cgagagttgc acggtattac gggctttcaa
     1081 tatctccaga ccctgccggg agcaggcgag cgcggcgcgc cggtacgtaa agttcaaatt
     1141 cttatgagga tcacgggcca ggttcccgaa atcccagcgg gaagttacgc gatctttctc
     1201 aaccaaccat atcgccaaaa cgtgctggcg ttgttcgaac cgcagatcta tcccgatcgc
     1261 atcacaccta cgggcgaagc tgagcgacct tatgacgttg cgggctggac gttgccgatg
     1321 caaatgggcg tcgagggcct tgccgtgatg tcgattcgcg aagctgcgaa tgaaaggaaa
     1381 ctaactttaa ttaagaacga gaacgatgtg cggaaagatc ttggcttgcc tctgtggaca
     1441 agtgacaagt cgccaatctc aaatcccgtc aagccaggcg tgcgtatcgg cgtttaccag
     1501 agcacgcgcg gcaacatgga cgaaggctgg acgcgctatg tctttgacac tttcaacgta
     1561 ccttatcaat cgttgcgcga tccggcaatc aacgagacga acctgcgcgc taattacgat
     1621 gcgatcgttt tgccttctga ccgaacgcgc gagccggccg acagcagcac gcccgcagcc
     1681 gaagcaggcg caggtatcag cgacaaaggc ttcgtcaatc tcgcccgctt tgtcgacgat
     1741 ggcggcacgc tgatttgctt tgacggatcg tgcggcgcgt tgatcaagca atggaagttg
     1801 ccgctgcgaa atgtgctcga aggcttgcgt tcatctgagt tttattgccc cggctcgatc
     1861 ctgcgcatca acgtggacac ctcaaaaccc atcgctcgga cgatgtcgaa agacgttgac
     1921 gcgtacttca tcaatagctc ggcattcgag cttgcggatt cgcccccgca tcgaactttt
     1981 cttgggcctg cgccgccgcc gaaggttgat gtcattgcgc gctatgcgaa agagaatgtt
     2041 ctgcgatcag gctggttgct tggtgaagac aagataaagg atcgcgttgc cctcgccgaa
     2101 gttacgatgg gcaagggccg catcgtgctc ttcgcttttc gcccgcagca tcggggccaa
     2161 acctggggca cgttcccctt catctggaac gcgatcaatt cggggcagta gcccgaccgc
     2221 gagggagggc cccagcttac gcttgctaga cgctcacgcc agtgctatct tcacctcgtc
     2281 agatcctgac tctcttccca atttctctcc tcgaaaaaat tactgcgagt gcggctcagg
     2341 agttgtgctt tgctgagcat ctctttcggt ttagccgcat caaaccaaag tgacgttcgg
     2401 gccacacggc gcgtgcagtc tccccgattt gaagcgtccg ggaagctacg gtcggtagtc
     2461 tccccaacag gagttcatct gatgaaaaga attatcgccc ttgtcctact cggttcattc
     2521 gccggagtgc tcgcgcagac agcaagcgcg cagtcgcgcc cgcgtcgcgt tggacagact
     2581 caaacacgcc agcaacagga tcagcagtcg caaccgcagc catcgtcgga cgatgcttcg
     2641 caagcttcgc gctcgtcgcg tccgccggtt ctcggtggcg cgaatcggaa tccgaatgaa
     2701 cagcggccgt cgtcaacttc gtcacagaac gccggcccgg aagaagtcag cgaaggcgac
     2761 atcgtgcgcg tcaacaccac gctcgtcagt attcccgtta gcgtgatgga tcgcgacggc
     2821 aaatacattc ccaacctgcg caaggaagac tttcgcattt gggaagacgg cgtggggcag
     2881 caagtcgctt atttcgcttc gactgaaaag ccgttcacgg tcgcattgct cattgacacc
     2941 agcggctcga cgcgattcaa gttggaagag attcaggatg cggcgatcgc ttttgtgaac
     3001 cagctccgtg cggacgatcg agtgatgatc gtttctttca atgataagat tcgggtgctt
     3061 acgccacagc cgaccaacga tcgtgccatg ctgcgcaacg caattcggca gaccgaagcc
     3121 ggttccggca ctcgtcttta tgacgccgtg gatcaggtga tcaatcagca gttcaatcgg
     3181 atcgaaggcc gtaaagcgat cgttttgttc accgatggcg tggacaccac gagcaaacat
     3241 gccagttacg aaagcaccgt tcgcgatgct gaagagctcg acgcacttat ctatccggtc
     3301 gaatacgata cttactccga catggggatc ttgggtccgg gcggcggcgg cggcggatgg
     3361 cccggtggcg gacagtccag cggaagtatt ctgatcgata ttctgggtgg aatctttggc
     3421 ggaggtggca atggcggggg aggaagctac ccaggcggcg gccgacgagg tggccgtggt
     3481 ggcggcagcg gcggtggagg ttcaggaaac agtcgtgatg aatacgagcg cgccgatcgt
     3541 tatctgcacg atctcgcgcg cgttaccggc gcgcgactct acaatgccgg gcaacaaaac
     3601 cttgattacg catttcggtc agtcgcggaa gaactgcgac gccagtatag cctcggctac
     3661 tatccgaaga aggctcctca gcccggcgag agacgatcga tcaaagtgcg cgtgaaccgt
     3721 cccgagttgg ccgtgcgcgc gcgcgatagt tatgttttcc agcctggagc aaacagcgct
     3781 gcgcaacaaa cgaactctca accaaagccg ccggttttga agaaggaatt gcgcggaact
     3841 ttctaaggat ttctccgtgt tctccgtgcc tccgtggtga atatttgcgt cacatgaatt
     3901 caaccacgga gacacggagg acacagagaa ttcacaccac cgtcccatcc gcaatcgtcc
     3961 cattcttcgg cacgatgatg attcgatcgc gaatgtagta actcccgtcc ggcccatctg
     4021 cgttctccgc gccagcttca ttcagcagtt tcacctgagc gccgatgcgc gcgttcttgt
     4081 cgatgatcgc gcgacggatg atcgagcctt caccgacgcc aatccatggc ctgccggtcg
     4141 cgcgatccgc ctgcatatct tccagcgtct gatagtaatc cgcgcccatc atgtaagacg
     4201 cctccagttg cacgccttcg ccgaggcggc tgcgcagacc gattagtgag tggttaatct
     4261 tcgcgccatt gatgatgcag ccctcgctga taatcgattc gagaatctca cacttgttga
     4321 tttttgatgg cggcagatat cgcgcgcgtg tgaacatcgg cgcctcggca tcgaacaaat
     4381 tgaacggcgg aattgctgtg gtcatgtcga gattagcttt gtagaaagcg ccgattgttc
     4441 cgatgtcttc ccagtatcca ttgaacagaa aagcctgcac gttgtaacgg tcgatgctcc
     4501 ccggaatcac ttcgcggcca aaatccatgt gcgttgtgtc ctcgcgcaac aactgctcca
     4561 ggcgttcgta tttgaaaacg taaattccca tcgaggccag aaaaggccgc gtgcttgctt
     4621 cagccgcagt caaacccagc gcggccgtgt ccacgcgcat cgcttccaac gcatcccctt
     4681 ttggcttttc gctgaattcg acgatgcggc ccgcgtcgtc agtcttcagc aaaccaaatt
     4741 cgctggcgcc ttctggcggt accggaatta cggaaaccgt cacgtcggcg tccgtctcgt
     4801 agtgtcgcgc gagaaacttc ttgtagtcca tgcgatacag atgatcgccg gacagaatca
     4861 gcagcgtgtc gatgcgccag tcgcgt
//
LOCUS       DASZZE010000395         2245 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_303350, whole genome shotgun sequence.
ACCESSION   DASZZE010000395 DASZZE010000000
VERSION     DASZZE010000395.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2245)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2245)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2245
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_303350"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..207)
                     /locus_tag="VHD88_07625"
     CDS             complement(<1..207)
                     /locus_tag="VHD88_07625"
                     /inference="COORDINATES: protein motif:HMM:NF015442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP cone domain-containing protein"
                     /protein_id="HVS21702.1"
                     /translation="MVDSRESREGEAIRRRRECLKCERRFTSYERIDQIPYMVIKKDG
                     SRETFDRNKVMAGLLRACEKRPIPP"
     gene            complement(282..1349)
                     /locus_tag="VHD88_07630"
     CDS             complement(282..1349)
                     /locus_tag="VHD88_07630"
                     /inference="COORDINATES: protein motif:HMM:TIGR00374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase transmembrane
                     domain-containing protein"
                     /protein_id="HVS21703.1"
                     /translation="MLSLAVAILWWFGRRLDWGQVKIAVQKSDWRLILLAAIVILVAY
                     VWRAIRWRVFLAPLVTTSFREIWIATTVGFAAILLVGRAGEVVRPVVLPMRDKRVRPA
                     ASFVTIMIERLYDFISVALIFAVNLLWFTPLGSTATELTRIREAGLLIVVLLAAAVAI
                     LIWFRRRSASVIGWLDRRIGGRSRVGGRLKHAALSILDQLATALGVLGKVRELAPTIG
                     LSLLLWFSVAFANLLIFRAFGLPFGMSQALFVLGWSMVASAVPTPGGGAGAFHAATGA
                     ALLLLGVGIDRAAAIAIVLHLVDFAPAALFGLFYFLRGDVNLARLRSLTSPSAVEHAV
                     EDEKVALKAGANQLEVAAVNE"
     gene            1692..>2245
                     /locus_tag="VHD88_07635"
     CDS             1692..>2245
                     /locus_tag="VHD88_07635"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HVS21704.1"
                     /translation="MGAARSLATNEGAELVRRCRAGDGAAWEEIVQTYSRRIYNLAYR
                     FTSRADTAEDLTQEVFIRVYRSLNQYNPKQGDLQNWLMRLARNLIIDDYRKRQRAPQD
                     EAADALEDHQYHLRSAGGSAQREIERRELGARVQAGIDKLSPDLRTCVILRDIEELTY
                     QEIVDLLKIPEGTVKSRINRGRIEL"
BASE COUNT          559 a          683 c          606 g          397 t
ORIGIN      
        1 cggtggaata gggcgcttct cgcaggcgcg caagaggccg gccatcacct tgttgcgatc
       61 gaacgtctcg cgactaccat ccttcttgat caccatgtac ggaatctgat cgattcgctc
      121 gtaagaggta aagcgccgct cgcacttcag acactcgcgc cgacgccgaa tggcctcgcc
      181 ttcgcgcgac tcgcgcgagt caaccacttt atcttccagg aaaccgcaga acggacattt
      241 catagacttt gagcctcact ctccgatttc aggccttaat tttactcatt gaccgcggcc
      301 acttcgagtt gatttgcgcc cgccttcaga gcaacttttt catcctccac ggcgtgctca
      361 accgcgctgg gcgaagtcaa agaacgcagt cgagcgagat tgacgtcgcc gcgcaggaaa
      421 tagaacagcc cgaacaacgc cgcaggtgca aaatcgacca ggtgcaaaac gattgcgatc
      481 gccgccgccc ggtcgatccc aaccccgagc agcagcagtg cggctcctgt ggcagcatga
      541 aacgccccgg cgccaccgcc gggagtcggc accgccgacg ccaccattga ccagccaagc
      601 acaaacagcg cctgcgacat cccgaatggc aatccaaagg cgcgaaaaat aagcaggttc
      661 gcgaacgcaa cggaaaacca aagcagcagc gacaaaccga ttgtgggcgc taactcgcgc
      721 actttaccaa gcacacccaa ggctgttgcc agttgatcga ggatgctaag cgccgcatgt
      781 ttcaacctgc caccgacgcg agaccgcccg ccaattcttc gatccaacca gccaattacg
      841 ctcgccgatc gccgccgaaa ccaaatcagt attgctaccg ccgcagcgag caagaccact
      901 atcagcaagc ccgcttcacg aatgcgggtg agttcggtgg ccgtgctgcc cagaggcgtg
      961 aaccacaaca gattgactgc aaagattaag gcgaccgaaa taaagtcgta caaccgctcg
     1021 atcatgatgg tcacgaaaga tgccgcgggt ctaacccgct tatcccgcat gggcagtacc
     1081 accggacgta cgacttcacc cgcacggcca accagcaata tcgcagcgaa tccgacagtg
     1141 gttgcgatcc agatctcgcg gaagctagtt gtgacgagag gcgcaaggaa aacgcgccag
     1201 cggattgcgc gccacacata agccacgagt attacgatgg cggcgagcag gattagccgc
     1261 caatccgact tctgcaccgc gatctttacc tggccccagt cgagccgccg accaaaccac
     1321 caaaggatcg cgacggccag cgatagcaag gcagtaaact ccagatatct ccgatacttt
     1381 cccatatttc cttaagcgta ctcggtgaac taacgagacg ttctagcggg gcagcgcaaa
     1441 acttgacgaa ctcggacgac gaccacaaga tatggtgtgg ctgagccagc ctataacagt
     1501 ttaatgttgc acgcaagaac gtgtcagaag cccgaccgtg agggagggct cacgattgat
     1561 taaagcttcc gacaagacga ccagtgctga cggaactttg tttcccagcc ggacgtaaga
     1621 cggtcgtgtc ggggacgcaa gcccccggcc gtgctttccg caacgacgag cgaaatcgga
     1681 gaccgtaaca agtgggagcc gcaagaagct tggctaccaa cgagggcgct gaattagtca
     1741 ggcggtgccg cgcgggcgac ggcgcggcct gggaagagat tgtccaaacc tattcacggc
     1801 gcatttacaa tctcgcttac cgttttactt ctcgcgctga caccgcggaa gacctgactc
     1861 aggaagtttt cattcgcgtc tatcgttcgc tgaatcagta caatcccaaa caaggtgatt
     1921 tgcagaactg gctgatgcgc ctggcgcgca acttgatcat cgacgattac cgcaagcggc
     1981 agcgcgcgcc acaggatgaa gctgcggacg ctcttgagga tcaccaatat catttgcgct
     2041 cggcgggcgg ttcggcgcaa cgcgaaatag agcggcgcga actcggcgca cgagtgcaag
     2101 ccggaataga caagctttcg ccggatttgc gcacttgcgt catccttcgt gacatcgaag
     2161 agctgactta tcaggagatc gtggacctgc tgaagatacc cgaaggcacg gtcaagtcgc
     2221 ggatcaatcg cggccgcatt gaact
//
LOCUS       DASZZE010000396         1678 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_12260, whole genome shotgun sequence.
ACCESSION   DASZZE010000396 DASZZE010000000
VERSION     DASZZE010000396.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1678)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1678)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1678
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12260"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1678
                     /locus_tag="VHD88_07640"
     CDS             <1..>1678
                     /locus_tag="VHD88_07640"
                     /inference="COORDINATES: protein motif:HMM:TIGR02074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PBP1A family penicillin-binding protein"
                     /protein_id="HVS21705.1"
                     /translation="DIFGVARALLRNAGDERMGQGGSTITQQLIKNTYLTPERTLRRK
                     YAEAMLAFTLERRLSKEDIFALYGNEIYLGQRGVVAVRGVDQAARVFFGKELKDLSLP
                     EAATIAGMIQSPSRYSPVRHSDAARARRNTVLGTMVRDGFIPLDQAASAAKEPLMIAD
                     FDPARESVAPYFIDYVNRVSEARASARVPTEKDSDAPLVTTLELDLQRLAAQAIQRQL
                     DHLDEVYKPRGLTPQAALVALDPKTGDVLAMVGGRDYGKSQLNRATDAQRQPGSVFKP
                     FVYAAALESGMSPLRMFKDAPQEFTYDRKFKYRPTNYGGGFSMQDVTMRTGLIKSLNV
                     VTVDVAMQTGLARVANTAQKFGLPRPVPYPALALGTTEVTPLQIAAAYAAFANGGKSI
                     QPNVIAQADREPQENQIIQPASAYVITDILEGVIDHGTARAARGAIKNTAVAGKTGTS
                     RDGWFVGYTPNLVCAVWIGFDDNKQLGLTGAEAALPVWTEFMKNVVDLRPELGGKSFA
                     QPDGVKIVEIDPETEELATGKCPQHERVAIAAAQAPTSECFRHSIYFALP"
BASE COUNT          353 a          480 c          507 g          338 t
ORIGIN      
        1 tcgatatttt cggagtggcc cgggcgctgc tgcgcaacgc cggcgacgaa cgcatgggcc
       61 agggcggttc aacgattact cagcaactca tcaagaatac ttacctgacg cctgagcgaa
      121 ctttgcgtcg caagtacgcc gaagcaatgt tggcgttcac gctggagcgg cgcctgtcga
      181 aggaagatat cttcgcgctt tatggcaacg aaatttatct gggccaacgc ggcgtagtgg
      241 cggtacgtgg cgtcgatcaa gcggcgcgcg tctttttcgg aaaagagttg aaggaccttt
      301 cgctgcccga ggccgctacc atcgccggca tgatccagag cccttcacgc tattcgccgg
      361 ttcgtcacag cgacgctgcg cgcgcgcggc gcaacaccgt gctgggcaca atggtgcgcg
      421 acgggttcat tcctttggat caagctgcgt ccgcggcgaa agagcctctg atgatcgcgg
      481 attttgatcc ggcccgggag tcggtagcgc cttacttcat tgattacgta aaccgagtgt
      541 cagaagcccg cgcgtcagca agggttccta ctgagaaaga ttccgacgct ccattagtca
      601 ccactctcga actcgatttg cagcggttag ccgctcaggc gatccaacgg cagctcgatc
      661 acctcgacga ggtttacaaa ccgcgcgggc tgacgccgca ggccgcgttg gtggcgctcg
      721 atccgaagac cggcgatgtg ttggccatgg tcggcggcag agactatggc aaatcacaac
      781 tgaatcgcgc cacggatgcg cagcgccaac ctggttcagt ctttaagcct ttcgtttatg
      841 ccgccgcgct ggaaagtggc atgtcgccgc tcagaatgtt caaggacgcg ccgcaggaat
      901 tcacttacga tcgtaagttc aagtatcggc ccacgaatta tggcggcggg ttttcgatgc
      961 aggacgtaac gatgcgcacc ggtctgatca aatcgctcaa cgtcgtaacc gtcgatgtgg
     1021 cgatgcaaac cggactggcg cgcgtagcga acactgccca gaaatttggt ttgccgcgtc
     1081 cggttccgta tccggccctg gcgctgggaa cgacagaagt cactcctttg cagatagccg
     1141 cggcttacgc cgcgtttgct aatggcggga agagtattca gccgaacgtc atcgcgcagg
     1201 cagatcgcga accgcaggag aaccaaatca ttcagcccgc gtcggcatat gtcatcacgg
     1261 acattttgga aggcgtgatc gatcacggca ccgcgcgcgc cgcgcgaggc gcgataaaga
     1321 acaccgctgt tgctggtaag accggcactt cgcgcgatgg ctggttcgtg ggctacacac
     1381 cgaatctggt gtgcgcggtt tggattggat ttgatgacaa caaacagctt ggcttgacgg
     1441 gcgcggaagc ggcgctgccg gtttggactg agttcatgaa gaacgtcgtt gatttgcgac
     1501 ctgagctggg cggcaagtcc ttcgcacagc cggacggagt caagatcgtc gaaatcgatc
     1561 ccgagacgga agaactcgcc accggcaagt gccctcaaca cgaacgcgtg gcgatcgctg
     1621 cggcgcaagc gccaacctcg gaatgctttc gtcacagcat ctattttgcg cttcccaa
//
LOCUS       DASZZE010000397         3916 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_209746, whole genome shotgun sequence.
ACCESSION   DASZZE010000397 DASZZE010000000
VERSION     DASZZE010000397.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3916)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3916)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3916
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_209746"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1458
                     /locus_tag="VHD88_07645"
     CDS             <1..1458
                     /locus_tag="VHD88_07645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21706.1"
                     /translation="GKNWSNVTPPKDLMPEWIQINSLEASPFDAGTAYVAATMYKFDD
                     YKPYLYKTSDYGKTWKKITNGIPDGAFTRVIREDPNKRGLLYAGTETGLYVSFDDGAN
                     WQSMQFNLPVTPITDLVIHKREKELVAATQGRSFWIFDDLPLLHQLMDAGGFKAASDS
                     HLFKPKEAYRMPGGGGFPLPPTATIGCNPASGAVVYYSLKSKPTTDVVLEFLDSSGKS
                     IRKFTARLPRAGGGQGQGEQPPAPPSEEGDFFGGGAPARVTTEVGLNRFVWDMRYPDP
                     VRFPGMILWAGETRGPHVVPGSYQVKLTVDGKTMTESFEVKPDPRLTTTAADYAKQLD
                     LALKIRDKQTETHNAIIQIRDVRKQVEDLLKRIAGQPNAKPISDAGTALNKRLTEVEE
                     ALYQTKNQSSQDPLNFPIRLNNKLAALGGVVARSETPPTDQSFAVYDELAGQIDAQLQ
                     RLSQIMKSDVPAFNRLVQEQNVPAIVVKPPAGEVR"
     gene            1597..2700
                     /locus_tag="VHD88_07650"
     CDS             1597..2700
                     /locus_tag="VHD88_07650"
                     /inference="COORDINATES: protein motif:HMM:NF014047.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAM domain-containing protein"
                     /protein_id="HVS21707.1"
                     /translation="MSLIMRFDIILMRLVFTGILMAAGYVLHPIPGHRLFSTGAAGLI
                     ALAIILFEIRIRRSSLKTLIGAAVGSILGIIGAYLIGTLITSQESAAVPPETRAFLTL
                     ALIFFMAYIGLMVGAAKGDYLDLSALGGIFSDKSSRRDLKILDTSVIIDGRIADVAET
                     GFLTGTLIVPQFILRELQQVADSPDSSKRQRGRRGLDMLNRLQNNSSLDIQIVETDFP
                     AVREVDLKLIELGKQLDAVIVTNDFNLNKVAQLRGVNVLNINELANALKPVVLPGEAM
                     RVFILKEGKEYNQGVAYLDDGTMVVVDNARRLIGKNADIAVTSVLQTTAGKMIFGRIW
                     EEADGAGNGERSRRSLREVRSAPAMTRITDTES"
     gene            2704..3399
                     /gene="ispD"
                     /locus_tag="VHD88_07655"
     CDS             2704..3399
                     /gene="ispD"
                     /locus_tag="VHD88_07655"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: protein motif:HMM:NF013308.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050518 - 2-C-methyl-D-erythritol
                     4-phosphate cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HVS21708.1"
                     /translation="MNVAIVVAAGKGTRLGGNRPKQFLEIGGIPVIIHTLRQFERCRE
                     INEIIIVLPAEEAVAFPSFAKEFGLKKLSQAVAGGATRAQSVLRGLNAIGTAEIVAVH
                     DGVRPFVTPDEIDRVVAAARASDAAILVAPVADTIKDIENGRVKRTPPRASLRRALTP
                     QCFRYDLLKRAYDQLDEVEAAGIEVTDDSLLVERLGVEIIAVEGSARNIKITREEDLV
                     LAEAILASFVSGQ"
     gene            3571..>3916
                     /gene="ispF"
                     /locus_tag="VHD88_07660"
     CDS             3571..>3916
                     /gene="ispF"
                     /locus_tag="VHD88_07660"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: protein motif:HMM:NF014588.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008685 - 2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HVS21709.1"
                     /translation="MFRIGIGHDTHRLVAGRPLILGGVRVESERGAEGHSDADALTHA
                     LADAILGALCEGDLGAHFPDDDPQWKDADSLKLLARVCWLARERGFHLVNADATIMLE
                     RPRLREHIAGMRD"
BASE COUNT          888 a         1071 c         1136 g          821 t
ORIGIN      
        1 ggcaagaatt ggtcgaacgt cacgccgccg aaagacttga tgccggaatg gattcagatc
       61 aactcgctcg aggcgtcgcc attcgacgcg ggcacggctt acgttgcggc aacgatgtac
      121 aagttcgatg actacaaacc ctatctctat aaaacgagcg actacggcaa gacgtggaag
      181 aagatcacaa acggcattcc cgacggcgcg ttcacacgag tgattcgcga agatccaaac
      241 aagcgcggct tgctgtatgc cggcactgaa acgggcttgt acgtttcgtt cgacgatggc
      301 gccaactggc aatcgatgca attcaatctc ccggtgactc cgattaccga tctcgtgatc
      361 cacaaacgcg aaaaagaatt ggtcgcggct actcagggtc ggtcgttctg gatttttgac
      421 gatctaccgc tgctgcatca gttgatggat gcgggtggat tcaaagcggc cagcgactcg
      481 caccttttca aaccgaagga agcttatcgc atgccgggtg gcggaggttt tcctctgccg
      541 ccaaccgcga cgatcggttg caatcccgcg agcggcgccg ttgtttatta ttctttgaag
      601 tctaaaccaa caacggatgt tgtgcttgaa ttccttgatt ccagcggcaa atccattcgc
      661 aagttcaccg cgcgactgcc acgagccggt ggcggacaag gtcagggcga acaaccgcca
      721 gcaccgccga gtgaagaagg agacttcttt ggcggcggcg cgccggcgcg cgtcaccacc
      781 gaagtcggcc taaatcgttt tgtttgggac atgcgctatc ccgatccagt gcgctttccg
      841 ggaatgattc tttgggctgg cgaaacgcgc gggccgcacg tcgtgcccgg cagttatcaa
      901 gtcaaactca cagttgacgg caaaacgatg actgagagtt tcgaagtcaa acccgatccg
      961 cgcttgacga cgacggctgc ggactacgca aagcaactag atctcgcgtt gaagattcgc
     1021 gacaagcaga ctgaaacaca taacgcgatc attcagattc gcgacgttcg caaacaagtt
     1081 gaggatctgc tcaagcggat tgctggtcag ccgaacgcca aaccgatcag cgatgcggga
     1141 acggcgctaa acaagagact cacggaggtc gaagaagcgc tctatcaaac caagaaccag
     1201 agcagtcagg atcctttgaa cttcccgatc cggctcaaca ataagctcgc cgcgctcggc
     1261 ggtgtcgttg cgcgttccga gactccgcca accgatcaat cgttcgcggt ctatgacgag
     1321 ctggctggac agatcgatgc gcagttgcag agactctctc agatcatgaa gagcgatgtg
     1381 ccggcgttca atcgactggt tcaggagcaa aacgttccgg cgatcgtggt caagccgcct
     1441 gccggcgaag tgcgttagcc ctatcttcca acaaagccgt ttagatgcgg gatttgtccc
     1501 gtcttagact gggcggacaa gtccgccctc caaacctcga gattttcaat ttgcgccctc
     1561 tgaattcgat gactcgcggc gcgagggcat gttaatatgt cgctcatcat gcgctttgat
     1621 atcatcttaa tgaggcttgt tttcactggg attctgatgg cggcaggcta tgtactacat
     1681 ccgattcccg gtcatcgctt gttctccacc ggcgcggcgg gtctgatcgc tttagcgata
     1741 atccttttcg agattcgcat tcgacgttcg tcgctcaaga ctttaatcgg agcggccgtg
     1801 ggatcgattc tcggaatcat cggcgcctac ctgattggca cactcattac cagtcaggaa
     1861 tcggcagccg tcccgcccga aacccgagcg ttcctgacgc tcgcgctgat ttttttcatg
     1921 gcgtacattg gcctgatggt cggcgccgcg aagggcgact atctcgatct gtcagcgctg
     1981 ggcggtatct ttagcgacaa atccagtcgc cgcgatctga agattctcga cacgtcggta
     2041 attatcgacg gtcgcatcgc cgacgtcgct gagacgggat ttctaaccgg gacgttgatc
     2101 gttccgcagt ttatcctgcg agagctgcaa caggttgccg actcgcccga ttcatccaag
     2161 cgccagcgcg gacgccgcgg actggacatg ctcaatcgct tgcagaacaa cagctcgctt
     2221 gacattcaaa tcgtggaaac agattttccc gccgtgcgcg aagtagattt gaaacttatc
     2281 gagttgggaa aacagctaga cgccgtgatt gtcaccaacg atttcaactt gaacaaggtt
     2341 gcgcaactgc gcggcgtcaa cgtgctgaac atcaatgagc tggcaaacgc gctgaagccc
     2401 gtagtgttgc cgggcgaggc aatgcgcgtc ttcattttga aagaaggcaa agagtacaac
     2461 cagggcgttg catatctcga cgatggcacg atggttgtgg ttgacaatgc gcgccgcttg
     2521 atcgggaaaa atgccgacat cgccgtgacc agcgtgctgc aaacaaccgc gggcaagatg
     2581 atctttggac ggatttggga agaagccgac ggcgcgggca atggcgaacg atcgcgccgg
     2641 tccctgcgcg aagtgcgttc agcccccgcc atgacgcgca tcaccgacac cgagtcataa
     2701 cgaatgaatg tcgcgatcgt tgtcgctgcc gggaagggca ctcggctggg cggcaaccgg
     2761 ccaaaacagt tcctcgaaat cggtggaatt ccagttatca ttcacacgct caggcagttc
     2821 gagcgctgcc gagagatcaa cgaaatcata atcgttttac ccgccgaaga agcggtcgct
     2881 tttccgtctt tcgcaaaaga gtttggattg aaaaagctgt cgcaggcagt tgccggcggc
     2941 gcgacgcgcg cgcaatcggt actgcgtggc ttgaacgcga ttggcactgc cgagattgtc
     3001 gcggtgcatg atggcgtacg acccttcgtg acgccggacg aaattgatcg cgtggtggct
     3061 gcggcgagag caagcgacgc cgcgattttg gttgcgcccg tcgccgatac catcaaagac
     3121 attgagaacg gacgcgtcaa gcgtacgccg ccgcgcgcca gcttgcgacg agcgttaacg
     3181 ccgcagtgct ttcgttacga tttgctaaag cgggcttacg atcaactgga tgaagttgaa
     3241 gcggctggaa tcgaagtaac agatgatagt ctgctggtcg agcgtctcgg cgtcgagatt
     3301 atcgcggtgg aaggcagcgc gcggaatatc aagatcacac gagaagaaga cttggtgttg
     3361 gcggaagcga tccttgcgtc atttgtcagt ggtcagtagc cacttgttcg caagcgggca
     3421 aagtgtttcc cttctcccgt tgggagaagg gctggggaag aggggggcga agcctaaggc
     3481 gaaccagata ctcacgccct ctccccgacc ctctcccaaa gggagaggga gactgaccaa
     3541 tgatcactaa caactgacca ctgacttctt atgttcagaa ttggcatcgg tcacgacacg
     3601 catcgtctcg tcgcaggacg acctttgatt ctgggcggcg tgcgcgtcga atcagagcgc
     3661 ggcgctgagg gacattctga tgctgacgcg ctgacgcacg cgctcgccga cgcgatcctg
     3721 ggcgcgctgt gcgaaggcga cttgggtgcg cactttcccg atgatgatcc gcaatggaaa
     3781 gacgccgaca gtttaaaatt actcgcgcgt gtctgctggc tggcgcgcga gcgtggattc
     3841 catctggtga acgccgatgc gacgatcatg ctggaacgac caaggctgcg cgaacatatc
     3901 gctggaatgc gcgaca
//
LOCUS       DASZZE010000398         3264 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_80401, whole genome shotgun sequence.
ACCESSION   DASZZE010000398 DASZZE010000000
VERSION     DASZZE010000398.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3264)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3264)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3264
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80401"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..753
                     /locus_tag="VHD88_07665"
     CDS             <1..753
                     /locus_tag="VHD88_07665"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HVS21710.1"
                     /translation="RVSLLLEGKRAFITGGTRGIGAALCDVFAREGADVAFNYNSRDD
                     LAEEVRQKIEAHGRRARSFKVSVIDRFGMKRLTREIVHNWGGIDILVNNAAINRGDNF
                     ATTTDRAWDEVINTNVGSLFAVTKPVYKQMIRQRKGKILNITSIGAMRALPTSVHYAT
                     SKAAMIGFTKCLAREAGTFGVSVNAIAAGIFDTDLAQTLPERLLQMHDFWASAGRLGR
                     PEELAEFAAFMVSDRNSFMNAEVVIVDGGAIT"
     gene            complement(900..1934)
                     /gene="lpxD"
                     /locus_tag="VHD88_07670"
     CDS             complement(900..1934)
                     /gene="lpxD"
                     /locus_tag="VHD88_07670"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: protein motif:HMM:NF002060.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HVS21711.1"
                     /translation="MKLSELAAQTGARVEGNTDTEVAGAAGLDEARPGYVTFLANPRY
                     TSRVKTTEASAIYLSENVEVKRDGLSILRAKDPYLAFTRALILFHPEASFEPFIHPSA
                     VIDPSARIGEAVFIDAYAVIGANAQIGDRVRIHPHATIYDGAQIGADSVIHSSVAIRE
                     NSLLGKRVIVHNNAVIGADGFGFAKDEQRRWLKIPQTGRVVIEDDVEIGAGTTIDRAS
                     TGETRIGRGAKLDNLVQIGHSCVVGEDTLICAQVGMAGSSRVGDRVVLTGQVGIGGHI
                     TVGDDAILYPQSGVPNDVAPGEMLVGTPAFEVGAFWRAVAVFKKLGEVPKRIRALEKR
                     LDEIEKSKSQ"
     gene            complement(1998..>3264)
                     /gene="priA"
                     /locus_tag="VHD88_07675"
     CDS             complement(1998..>3264)
                     /gene="priA"
                     /locus_tag="VHD88_07675"
                     /inference="COORDINATES: protein motif:HMM:TIGR00595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005658 - alpha DNA polymerase:primase
                     complex [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0003688 - DNA replication origin binding
                     [Evidence IEA];
                     GO_function: GO:0016818 - hydrolase activity, acting on
                     acid anhydrides, in phosphorus-containing anhydrides
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HVS21712.1"
                     /translation="ALIIIDEEHDTSYRQEESPFYHARDTAIVRAQKESAVVVLGSAT
                     PSLESFHNAQSGKYQYLNLPDRVANRPMARAEMVDMREVFARRKKPAIFSDQLLEAIE
                     HTRARGEQSIILLNRRGYSSFILCRSCGESINCPNCDVTLTYHQGDRTLVCHYCNHRQ
                     RAPSQCPVCASKYIYYIGEGTEQIEELLRKRFAELRVGRIDRDTKLRRHEFEKTLLDF
                     AKGEIDLLVGTQMLAKGHDFPNVTLVGVVSVDAGLALPDFRAAERAFQLITQVAGRAG
                     RGDLPGRVLIQTYHPDHYALRHACAQDYQGFYDEEIRHRRNHGYPPFVALALMLIRHK
                     DPARAKTIAHELRNALVKANGAHTCRILGPAPAPLARLRDEYRFQVLVTSRSRKHLRA
                     VIDHAMVALEKAGHDLRSVNLEIDPVSMM"
BASE COUNT          714 a          927 c          939 g          684 t
ORIGIN      
        1 agggtgagtc tgctactcga aggaaagcgc gcgttcatca ccggtggcac gcgcgggatc
       61 ggcgcagcgc tgtgcgatgt gttcgcgcgc gaaggcgccg acgtcgcgtt caactacaac
      121 tcgcgcgatg atcttgcgga agaagttcgg caaaagatcg aagcgcacgg gcgtcgcgct
      181 cgctcgttca aagtatcagt catcgatcgc ttcgggatga aacgtttgac gagagagatc
      241 gtgcataatt ggggcggcat cgacattctg gtaaacaacg cggcgatcaa tcgcggcgac
      301 aactttgcga caacgaccga ccgagcgtgg gacgaagtga taaacacgaa tgtcggcagt
      361 ctgttcgcgg tgaccaagcc cgtttacaaa cagatgatcc ggcagcgaaa aggaaagatc
      421 cttaacatta cttcgatcgg cgcgatgcgc gcgctgccga cttcagttca ttacgctact
      481 tcaaaagccg cgatgatcgg tttcacaaaa tgtctcgcgc gcgaggctgg aacgttcggc
      541 gtcagtgtaa atgccattgc cgccggaatc ttcgatactg atctggccca gactctccct
      601 gagcgccttt tgcagatgca tgacttctgg gcgtcggccg gtcggctcgg gcgtccggag
      661 gagttggccg aatttgccgc tttcatggtg agcgatcgca attctttcat gaacgccgag
      721 gtagtgatcg tcgatggcgg cgcgattacc tgaggtaata actttggtca tggaggaatt
      781 tgggccagtc agttagcagc gcggcaatca ggatcgcaga caagaaaaca tacgccgacc
      841 agaagagcca aaagagaagg cctgttcgaa tttcttccca agacaagtgc ggctcgtcac
      901 tactgagact ttgatttctc gatctcatct agtcttttct ccaaagcccg gattcgcttc
      961 ggcacttcgc ccaacttctt gaagacagcc actgctcgcc agaaggcgcc gacttcgaac
     1021 gccggcgtgc cgacgagcat ttcgccggga gcgacatcgt tcggaacgcc gctttgcgga
     1081 taaagaatcg catcatcgcc aaccgtgatg tgaccgccga ttcccacctg acccgtcagg
     1141 actacgcgat cacccacgcg tgaacttcca gccattccca cttgcgcgca tatcaacgta
     1201 tcttcgccga cgacgcatga gtggccgatc tgaaccaggt tatcgagctt ggcgccgcgg
     1261 ccgatgcgcg tctctccggt cgaggcccga tcgatcgtcg tgccagcgcc gatctcgaca
     1321 tcatcttcga taacgactcg tccggtctgc gggattttta accagcgacg ttgttcgtct
     1381 ttcgcaaaac caaaaccatc cgcgccgatc accgcattgt tatgcacgat cacgcgctta
     1441 cccagcagcg agttttcgcg aatcgccacg ctggaatgaa tgactgaatc tgcgccgatt
     1501 tgcgcgccgt cgtaaatcgt cgcgtgcgga tgaatgcgca ctcgatcacc aatctgagca
     1561 ttcgcgccaa tgactgcgta cgcgtcgatg aaaactgcct cgccgatgcg cgcgcttgga
     1621 tcgattaccg cagaagggtg tatgaaaggc tcgaacgaag cttcaggatg aaaaagaatc
     1681 agcgcgcggg taaaagccag ataaggatct tttgcgcgca ggatcgaaag accgtcgcgc
     1741 ttcacttcaa cgttctcgct caaatagatc gccgaagcct cagtcgtctt aactcgtgac
     1801 gtgtaacgcg ggttggcgag aaaagtgacg taacccggcc gagcttcatc gagtccggcg
     1861 gcgcccgcga cttcagtgtc cgtatttccc tcaacacgcg cgccagtctg cgcggcaagt
     1921 tcagagagtt tcatggcgtg agtttagcgc atcaggttgc aaaggcgaac cttcttgaac
     1981 tcgagcccac gaagccgtca catcatgctc acgggatcga tctccagatt cactgagcgc
     2041 aaatcatgtc cggctttttc gagcgcgacc attgcgtggt ctatcacggc gcgcaaatgc
     2101 tttcggctac gcgatgtcac aagcacttgg aagcgatact catcacgcaa acgagccaat
     2161 ggcgccggcg cggggccgag tatgcgacag gtgtgagcgc cgtttgcttt caccagagcg
     2221 tttcgcaatt cgtgcgcgat ggttttcgct cgcgccggat ccttgtgacg aataagcatc
     2281 aaggcaagcg cgacgaacgg ggggtaaccg tgattgcgcc gatgccgaat ctcttcatca
     2341 tagaaccctt gatagtcctg cgcgcaggcg tgtcgcagag cgtaatgatc ggggtgataa
     2401 gtctggatca aaacgcgccc gggcaagtcg ccgcgaccgg cgcgccccgc gacctgcgta
     2461 atcaactgaa aggcgcgctc tgcggcgcga aagtccggca aagcgaggcc ggcatcgact
     2521 gagaccacac caaccagtgt gacgttggga aagtcgtgtc ccttcgccag catctgcgtg
     2581 ccgaccaaca gatcgatctc gcctttggcg aaatcaagca gcgttttttc gaattcatgg
     2641 cggcgcagtt ttgtgtcgcg atcgatgcgg cccactcgca actccgcaaa gcgtttgcgc
     2701 aggagttcct cgatctgctc ggtgccttcg ccgatgtaat agatgtactt gctcgcgcac
     2761 acggggcatt gcgagggcgc gcgctgacga tgattgcaat agtgacagac cagcgtgcga
     2821 tcgccctgat gataagttag ggtcacgtcg cagttgggac agttaatcga ctcgccgcat
     2881 gaccggcaaa ggatgaagct cgaatagccg cggcgattca gaaggatgat cgactgctct
     2941 ccgcgcgcgc gtgtgtgttc gatggcctcc agtaattggt cggagaagat tgccggtttc
     3001 tttcgccgcg caaaaacctc cctcatatcg accatctcgg ctcgggccat cggccggttc
     3061 gcgacgcggt caggaagatt cagatattga tacttgccgc tctgcgcgtt gtgaaaggat
     3121 tccagcgaag gcgtcgccga gccgagtaca acgaccgcgg attctttctg agcgcgcacg
     3181 atcgcggtgt cgcgcgcgtg gtagaacggc gactcttcct gccggtaaga agtgtcgtgc
     3241 tcctcgtcaa tgatgatcag ggca
//
LOCUS       DASZZE010000399         2814 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_209825, whole genome shotgun sequence.
ACCESSION   DASZZE010000399 DASZZE010000000
VERSION     DASZZE010000399.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2814)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2814)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2814
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_209825"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1114
                     /locus_tag="VHD88_07680"
     CDS             <1..1114
                     /locus_tag="VHD88_07680"
                     /inference="COORDINATES: protein motif:HMM:NF024247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HVS21713.1"
                     /translation="RLTHRDQTISKPVPVWVMPGQPDDVITIHLGYGRARAGRVGEGL
                     GFNAYEIRYSDEPWTAFGAWVSKTNEQYQLAATQVHFSMEGRDLLRESSLEEYLKEKD
                     RLREEAAKQKKELHDLSLYKDFDYQNQGNGYAWGMSIDLNSCVGCNACAIACQAENNI
                     PIVGKEQVSRSREMHWIRIDAYFKGDADKPEGPFFQPVPCMHCENAPCEPVCPVHATV
                     HSTEGLNEMVYNRCVGTRYCSNNCPYKVRRFNFMLYQDWETPTYQLMRNPDVSVRSRG
                     VMEKCTYCVQRIQAAKIQSEIEGRTVRDGEIVTACQSVCPTEAIVFGNINDPNSRVSK
                     LKALERDYSLLGELNTRPRTTYLSALRNPNPEIVKS"
     gene            1222..2595
                     /gene="nrfD"
                     /locus_tag="VHD88_07685"
     CDS             1222..2595
                     /gene="nrfD"
                     /locus_tag="VHD88_07685"
                     /inference="COORDINATES: protein motif:HMM:NF015851.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NrfD/PsrC family molybdoenzyme membrane anchor
                     subunit"
                     /protein_id="HVS21714.1"
                     /translation="MEERPDKLSIHGTHPVVGSELTFGSVTDKISSIVLKRKTPLGWF
                     IGFAISFALFQLLLLTITNLLFNGIGLWGINQPVGWGFAIINFVWWIGIGHAGTLISA
                     ILLLLRQTWRTSINRFAEAMTLFAVAQAGIFPVMHLGRPWLGYWLFPYPNTMGIWPQF
                     RSPLMWDVFAISTYATVSAMFWFVGLIPDFATLRDRANSKIFRIIYGMLSMGWRGSAR
                     HWHRYEMAYLLLAGLATPLVLSVHTIVSFDFSIGIIPGWHATIFPPYFVAGAIYAGFA
                     MVLFLTIPLRKFYGLESFITMRHMHNMAKVMLATGLIVVYGYMMEAFFGWYSGNPYES
                     FMIWNRMHGPYSHYYWALILCNGITPQLLWFKKIRANLLVLWLIAIVVSIGMWLERFV
                     IVVTSLSRDFLPSSWGFYQPTQWDWAMFIGTLGFFFALLFLFIRFLPMISIFEMRTIL
                     PAAEVEE"
BASE COUNT          590 a          728 c          817 g          679 t
ORIGIN      
        1 cagattgacg catcgcgacc agacgatcag caaacctgtt ccggtctggg tcatgccggg
       61 tcagcccgat gatgtgatca cgatacatct cggttacggc cgcgcgcgcg cgggccgagt
      121 cggcgaaggt cttggcttca acgcttacga gattcgctac tctgacgagc cgtggacagc
      181 cttcggcgcg tgggtgagca agacgaacga gcaatatcag cttgccgcca cgcaggttca
      241 cttttcgatg gaaggccgcg atttgctgcg cgaaagttcg ctcgaagaat acttgaaaga
      301 gaaagatcgt ttgcgtgaag aagccgcgaa gcaaaagaaa gaactgcacg atctctcgct
      361 ctacaaagat ttcgattacc agaaccaggg gaacggttac gcgtggggca tgtcgatcga
      421 cttgaacagt tgcgtcggct gcaatgcgtg cgcgatcgcc tgccaggctg aaaacaacat
      481 tcccatcgtc ggcaaagagc aggtctcgcg cagtcgcgag atgcactgga ttcggatcga
      541 cgcttacttc aaaggcgacg ccgacaaacc cgaagggcct ttcttccagc cggtgccgtg
      601 catgcactgc gagaatgcgc cgtgcgaacc tgtctgtccg gtccacgcga cggtgcacag
      661 caccgaaggc ctcaacgaaa tggtttacaa ccgctgtgtc ggcacgcgct attgctcgaa
      721 caactgtccg tacaaagtgc gccgcttcaa ttttatgctg tatcaggatt gggagacgcc
      781 gacttatcag ttgatgcgca atccggacgt gtccgtgcgc agccgcggcg tcatggaaaa
      841 gtgcacttac tgcgtgcagc gaattcaagc cgcgaagatc caatccgaga tcgaagggcg
      901 caccgtgcgg gacggcgaga ttgtgaccgc gtgtcagtcg gtttgtccga ccgaagcgat
      961 cgtgttcggc aacatcaacg atccgaatag ccgcgtgtca aagctgaagg cgctggagcg
     1021 cgattattcg ttgctgggtg aactgaatac tcggccaagg acgacgtatc tatcggcatt
     1081 gagaaatccg aacccggaga ttgttaagtc ttaacagcca cagaggcaga gacacagaga
     1141 tgaaaccaaa cacaaataat aatgcattac cggccctttc tatgtgtctc cgtgtctctg
     1201 tggctgatta atttggtacc gatggaagag cgtccagaca aactgtcaat tcacggcacg
     1261 cacccagtcg tcggctcaga gctgacgttt ggatcggtca ccgacaagat cagctcgatc
     1321 gtcttgaagc gcaagacgcc gcttggctgg ttcatcggct ttgcgatctc gttcgcgctg
     1381 tttcaactac tgctgctgac gatcacgaat ctgcttttca acggcatcgg cctttgggga
     1441 atcaatcagc cggttggttg gggattcgcc atcatcaact ttgtctggtg gatcggaatt
     1501 ggccacgcgg gaactttgat ctccgcgatt ctgcttttgc tgagacagac atggcgcact
     1561 tcgatcaatc gttttgctga agcaatgact ttgttcgcgg tggcccaggc gggaatcttc
     1621 cctgtaatgc acttggggcg cccatggctc gggtactggc tgttccctta tccaaacacg
     1681 atggggatct ggccgcagtt ccgcagccct ttgatgtggg acgtgttcgc gatttcaact
     1741 tacgcgacgg tttcggcgat gttctggttc gtcggattga ttccggattt tgcgacgctg
     1801 cgcgatcgcg cgaacagcaa aatctttcgg attatctacg gcatgttgtc gatgggctgg
     1861 cgcggttcgg cgcggcactg gcatcgttac gaaatggcgt acttgctgct ggccggattg
     1921 gcgacgccgc tggtgctctc agtccacacg atcgtcagct ttgatttttc gatcggtatc
     1981 attcccggct ggcacgcgac gatctttccg ccttattttg tcgccggcgc gatctatgcg
     2041 ggctttgcga tggttttgtt tctgacgatt ccgctgcgca agttctatgg actcgaaagc
     2101 tttatcacga tgcgccacat gcacaacatg gcgaaggtga tgttggcgac cggcttgatt
     2161 gttgtttatg gctacatgat ggaagcgttt tttggctggt acagcggcaa tccatacgag
     2221 agtttcatga tctggaatcg catgcacggg ccgtactcgc attactactg ggcgctgatc
     2281 ctgtgcaacg gaatcacgcc acagcttctc tggttcaaga aaattcgcgc gaatctcttg
     2341 gtgctttggc tgatcgcaat cgtggtgagc atcggcatgt ggctcgagcg gttcgtcatc
     2401 gtcgtgacca gtttgtctcg cgatttcctg ccgtcgtcgt ggggctttta tcagccgaca
     2461 cagtgggatt gggcgatgtt catcggcacg ctcggatttt tctttgcact gttgtttttg
     2521 ttcattcgct ttctgccgat gatttcgatc ttcgagatgc gcacgattct gccggcggcg
     2581 gaagtggaag aataggaaga tgctagaggc tggagattag aggctagttt caagtgcgat
     2641 gaagggcaag cagccaaaac tttacggtgt aatggcccag ttcgacagtc cgaccgcgct
     2701 ggtcgcggcg gcgcgtgaaa cgcacgcggc gggctatcgt caagtcaatg gttattcgcc
     2761 atttccgatc aaggagctgt cggaagcgat cgggttcaaa cgcacaagtc tgcc
//
LOCUS       DASZZE010000400         2393 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_129222, whole genome shotgun sequence.
ACCESSION   DASZZE010000400 DASZZE010000000
VERSION     DASZZE010000400.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2393)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2393)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2393
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129222"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..597)
                     /gene="ruvA"
                     /locus_tag="VHD88_07690"
     CDS             complement(<1..597)
                     /gene="ruvA"
                     /locus_tag="VHD88_07690"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00084.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009379 - Holliday junction helicase
                     complex [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HVS21715.1"
                     /translation="MIAHLSGTLLSKQATSAIVDVGGVGYEATIPLSTFYELGDVGSQ
                     VQLRIYTHVREDALQLFGFKTARERELFLQLISVSGVGPGLAIKLLSGMNADEMVASI
                     RTNNLARLVSIPGVGRKTAERLVVDLRDKIAALSSPALEEEFAAKAAVAGAAPSPDSM
                     RNDALSALANLGYQKPAAEKAVTKAVDEGGELSVELILR"
     gene            883..1593
                     /locus_tag="VHD88_07695"
     CDS             883..1593
                     /locus_tag="VHD88_07695"
                     /inference="COORDINATES: protein motif:HMM:NF003992.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-sensing transcriptional repressor Rex"
                     /protein_id="HVS21716.1"
                     /translation="MKREKISELTTNRLSVYLRCLNELAGAGIKTVSSQELAEQFNLN
                     SAQIRKDLGYFGEFGVRGVGYFIDDLRKHLTKILGLDRPHHVGIIGAGRLGTALANYN
                     GLSKSSFTVVAMFDNDKKKVGKRVGASDIPVHDVSKIARVVRDEAIDVAVIAVPARAA
                     QRVLNQIMAAGVKAILNFAPAPLTARLGVKVKTVDLTTSLESLSYFLARPQIGRVTKA
                     RRGATGFDEVVENTGRGL"
     gene            1797..2243
                     /locus_tag="VHD88_07700"
     CDS             1797..2243
                     /locus_tag="VHD88_07700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21717.1"
                     /translation="MLSTNMIDENVMYADGGRRKNADVRILFPPNSQYTQAVARPGKQ
                     GVLQLRVKFEADGSISEITPLAKRSICDICLLPDNEAKVISPDLPKTRKRDGIEVVGI
                     DPTSPQSRELVEAAAEAVKQINFIPFQSEGKPVPTHGLVECVFRLD"
BASE COUNT          558 a          637 c          666 g          532 t
ORIGIN      
        1 acgcagaatc aactcgactg acaactcgcc gccttcatca acggccttgg ttacggcttt
       61 ttccgccgcc ggtttttgat agccgagatt cgcgagcgcc gacagcgcat cgtttcgcat
      121 tgaatccggc gaaggtgccg ctcccgccac ggcagctttt gcggcgaact cttcttccaa
      181 agccggcgac gacagcgcag ctatcttgtc acgcaaatcg acgaccaaac gttctgcggt
      241 tttgcgtcca acgccgggaa tcgaaaccag tcgcgctaga ttattagtcc gaatcgaagc
      301 gaccatttca tccgcgttca ttcccgacaa caacttgatc gccaatcccg gccccacgcc
      361 gctgaccgag atgagctgca ggaagagttc gcgttcgcgc gctgtcttga atccgaaaag
      421 ctgaagcgca tcctcgcgca cgtgtgtgta aattctaagc tgaacctgcg agccgacatc
      481 acccaattcg taaaacgtcg aaagtggaat cgtcgcttca tagccgacgc cgccgacatc
      541 gacgatggcc gatgtggctt gtttggaaag aagtgttcct gacaggtgtg cgatcatgag
      601 tctggagcgc gagcatccct gccgcatttg ctcccctctc cgttggggag agggattagg
      661 gggagagggg cttagcgccg ctaatccctc ccctttaatc ccctcccaga gggaggggac
      721 aactttcaaa agtttgatgc ttcaatctca aagctaaaat taatagccgc tcgctaccgc
      781 gcgcggttct gtaatggcgc acgattatcg cgcaaggaat tttcaatcgc aaatctaccg
      841 ctttccggca gggccatctc ggcgttatac tttggtcgcg tcatgaagag agaaaagatc
      901 tcagaactga caacaaaccg tctgagcgtt tacctgcgct gtctgaacga actggcgggc
      961 gcgggaatca aaacggtttc atcgcaggag ttggcggaac agtttaatct taactcggcg
     1021 cagattcgca aggatttggg ttacttcggc gagttcggcg tgcgcggtgt cggctacttc
     1081 atcgatgatc tgagaaaaca tctgacgaag atcctcggtc tcgataggcc gcatcatgtc
     1141 ggcatcatcg gcgctggacg attgggaact gcgctcgcaa attacaacgg tctctcgaaa
     1201 tcgagtttta ccgtcgtcgc gatgttcgac aacgataaga aaaaggtcgg caagcgagtc
     1261 ggcgcttccg atattcccgt tcacgatgtg agcaagattg ccagggtcgt gcgagatgaa
     1321 gcgatcgacg ttgccgtaat agccgtgcct gcgcgcgccg cgcagcgcgt gctgaatcaa
     1381 atcatggctg ccggcgtgaa agcgattctg aacttcgctc cggcgccgct gaccgcgcgt
     1441 ttgggcgtaa aagtgaagac cgttgacttg acgacatcgc tggagtcgtt gtcgtacttt
     1501 ttggcgcgac ctcagattgg gcgggtaacg aaagcacggc gcggtgcgac cggatttgac
     1561 gaggttgttg agaacacggg acgagggctg tagtggtgtc ttggttagga atgaagcggt
     1621 ttatcaaaat agtcttgcca tgcgcattcg ctctcgcagt tgccttccta gtgtggggct
     1681 ttgtaagtaa tctcagatct catcggtcaa cgcagccgct agccccagcc gaagctaact
     1741 acgcgtttaa tgcgccgagc gagaacaggc agcgaacacc cgttgccgaa cttcacgtgc
     1801 tctccacaaa catgattgac gaaaacgtca tgtacgcaga cggtggaagg aggaagaatg
     1861 cagatgtgag aattctcttt ccgcctaatt cgcagtacac tcaggccgta gcgaggcccg
     1921 gcaagcaagg tgtcttgcag ttgagggtga aatttgaagc agacggaagt atttccgaaa
     1981 tcacgcctct cgctaagcga agtatatgcg acatttgctt gttgcccgac aacgaggcga
     2041 aagtaatttc cccagactta ccaaagactc gcaagcgaga cgggattgaa gtagtaggga
     2101 ttgatcccac ctcgcctcaa tcgcgcgaac tggtcgaagc ggctgctgaa gctgtgaagc
     2161 agatcaactt cattcctttt cagagcgaag gcaagcccgt gccaactcac ggactcgtgg
     2221 aatgcgtctt tcgcctcgat tgaattggtt cacgccgaaa tggacgaaca aaccgccaga
     2281 cgcgacctga tacgaatctg tcaactgatg tacgagcgga gctatgtcgt cgcgtctgat
     2341 ggtaacgtca gcgtgcgtct tgatgacggt cgagtgcttg ctacgccgac aat
//
LOCUS       DASZZE010000401         6444 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_324786, whole genome shotgun sequence.
ACCESSION   DASZZE010000401 DASZZE010000000
VERSION     DASZZE010000401.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6444)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6444)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6444
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_324786"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..471)
                     /locus_tag="VHD88_07705"
     CDS             complement(<1..471)
                     /locus_tag="VHD88_07705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21718.1"
                     /translation="MPPPVQRLPSFNKDRIEDSTATQANNGLHFAYPAIAVNQNNDML
                     IGYTRFSASASPTAAYSFRARGDPLGTTRGDQTLKSGLGYYEKTFSGTVNRWGDYSVS
                     VVDPTNDTDLWTEQEYADASVGTGNGSGRWGTWWGQIVINKADQTITFGPLSNRT"
     gene            complement(882..1322)
                     /locus_tag="VHD88_07710"
     CDS             complement(882..1322)
                     /locus_tag="VHD88_07710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21719.1"
                     /translation="MTVTNSQIRLHNKLTGAAISTVPEHGVGGFWTPVLPAGSTGAFD
                     PHVLYDPFSGRWMFTVASDGEKSDSSVCIATSQTNDPSGTWNLFRFDVDSADTLWADY
                     PMLGFNKDWIFVSLNMFTMSNNSFSRGQIYVFNKANLNAGSGCR"
     gene            complement(2106..2696)
                     /gene="dcd"
                     /locus_tag="VHD88_07715"
     CDS             complement(2106..2696)
                     /gene="dcd"
                     /locus_tag="VHD88_07715"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR02274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008829 - dCTP deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0009394 - 2'-deoxyribonucleotide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HVS21720.1"
                     /translation="MTVKSDRWIRQMAEDAQLIQPFEERLVRESEGRRIISAGASSYG
                     YDMRLADDGFRVFSPIHGREIDPKHFDESSLVEPPLQTAEDGSKYYLLPPHSYALGVT
                     VETFHMPRNVTGICMGKSTYARAGLIVNTTPLEAGWIGRLVIELGNLADLPLRVYVNE
                     GIGQVIFLESDEDCDVSYEDRGGKYQGQTGLTYSRL"
     gene            complement(2954..3085)
                     /locus_tag="VHD88_07720"
     CDS             complement(2954..3085)
                     /locus_tag="VHD88_07720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21721.1"
                     /translation="MSCVDEVLSNELRAQTDLNKAIAELQRATGNSLTANNVAVKVH"
     gene            complement(3072..3908)
                     /locus_tag="VHD88_07725"
     CDS             complement(3072..3908)
                     /locus_tag="VHD88_07725"
                     /inference="COORDINATES: protein motif:HMM:NF024923.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-binding protein"
                     /protein_id="HVS21722.1"
                     /translation="MTSRQSIKLTLIVLLALAAGASQLACSCSNGQPNNNGASASLAA
                     SVIEVSTTAAISRQLPRFFEATGSLAADVQTDVQPQTAGKIVAVGVDMGSAVRKGQML
                     VRLEDADYKLRVDQAVAQLDNAKAAVKQAEEKIGLRAGQQFDPTKVADVSAARANYDL
                     AESNFQRAQKLVESGDISRAEYDQRKSQQDSLRQMYESAITQARQNYAAVLVARTTVT
                     NAQTQVDLARRNLSYTVVTAPIDGFVLERPVDVGTYVSTTTKVATVVRTNPLWIRIDE
                     LR"
     gene            complement(3905..4612)
                     /locus_tag="VHD88_07730"
     CDS             complement(3905..4612)
                     /locus_tag="VHD88_07730"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HVS21723.1"
                     /translation="MENGVTASGARMAGGERRLQILRVAMRVFSRRGFRGTTTKEIAL
                     AAGVSEAMVFRHFATKKKLYSAIIDQKACLGDERDPYQVVADALERKDDAAVFERLAL
                     DALKQNECDPDFQRLLLHSALEGHELAQMFWDKFVRRVYGFLGDYIRQRQRDGAMIDV
                     EPAIIVRAFIGMVIHHSLNNNLWDRKRRLLKISNEAAAREFTDILLRGVASRAKQPNG
                     SVNKKARNNSKRKKSSR"
     gene            4884..5135
                     /locus_tag="VHD88_07735"
     CDS             4884..5135
                     /locus_tag="VHD88_07735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21724.1"
                     /translation="MSELEETARQYGRKIAAAASQAGDYVSEKVNVVGEKLKDLQGKD
                     IGEIAGEAKDYARKNPGQAILISAAAGLFLGLLLRGGRR"
     gene            complement(5258..6193)
                     /locus_tag="VHD88_07740"
     CDS             complement(5258..6193)
                     /locus_tag="VHD88_07740"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HVS21725.1"
                     /translation="MNRREFTRILGIGAVALGVPRIGGSSSTQPQFSITMDDFAWHNA
                     VHLTAEGRNRAILDVLSANRAKAALFVVGGMVDSEERGKKLLRFWDETGHIIGNHTYS
                     HRSLNSTITAAEYEQDISRAEEVLKEFKQFRRIFRYPALKEGNTPAKRDHVRAFLKQH
                     GYRIGHVTIDNSDWIIDQRLAARLQKDPRADVKPYRDFYLAHMWDRAQYYDSLAKQVL
                     GRPVKHTILMHFNLLNGLFLGNLIEMFKSKGWQLIDAEEAFTDPVFRAEPKIVPAGES
                     VVWALAKEAGKIPMSLRYPAEDGEYEKAKMDKLGL"
     gene            complement(6218..>6444)
                     /locus_tag="VHD88_07745"
     CDS             complement(6218..>6444)
                     /locus_tag="VHD88_07745"
                     /inference="COORDINATES: protein motif:HMM:NF013781.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016866 - intramolecular transferase
                     activity [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
                     /protein_id="HVS21726.1"
                     /translation="PAVEQSQIDRVRSLRERRDAIACETSLVRLEEAARGTENVLPRI
                     LDCVEALATVGEISNRLRVVWGEYREAVTV"
BASE COUNT         1359 a         1798 c         1792 g         1495 t
ORIGIN      
        1 ggttctgttc gaaagcggtc cgaacgtaat cgtctggtca gctttgttaa taactatctg
       61 tccccaccag gtgccccagc gaccagagcc gttgccagtc ccgacggatg cgtcagcgta
      121 ctcctgctca gtccacaagt cggtgtcgtt agtgggatca accaccgaaa cgctgtaatc
      181 gccccagcga ttgaccgtac cagaaaaagt cttctcgtaa tagccgagac ccgacttcaa
      241 ggtttgatcg ccccgcgtag ttccaagagg atcaccgcga gcgcgaaacg aatacgctgc
      301 tgtcggcgaa gcactcgccg agaatcgtgt gtagccaatc agcatgtcat tgttctggtt
      361 aaccgcgatg gcaggataag cgaaatgcag accattatta gcctgggtag cggtagagtc
      421 ttcgatacgg tccttgttga atgacggtag ccgttgaacc ggaggaggca tctacctgcc
      481 accactgcgc cgctgcgtgc gtcggcgcgc caccggatgg caaagtgata gtctgagcaa
      541 accagagtga agtattagcg ccgactgtgc gaaccacagc gttaagaacg cgcgagtctc
      601 ctacatctat cattcgcgcc gtgctcgtgc atgcgggagc gacgcacatc tgtggcaaaa
      661 actctcctga cggcggagac caaccaccga gagtggaact catcaccgct gtatcaatag
      721 tgagcgtggg tgctgaggga gacaagccga cgatcgtgga ttttctcgct gtgccgctgg
      781 cgttgctact gtgccgaatc agaaactcgg tggtgagagt gttatccaac gtggcggcgg
      841 gctgtaaaga aaacgggatc gaggcgctat tgaagacgaa gttaccggca accactgccc
      901 gcattgaggt tcgccttatt gaacacgtag atctgtccac gagaaaagct gttgttgctc
      961 atcgtgaaca tgttaagcga aacgaagatc caatctttgt tgaaccctag cattggatag
     1021 tcagcccaga gtgtgtcagc agagtcgacg tcaaaacgaa aaagattcca tgttcctgac
     1081 ggatcgttgg tttgcgaagt cgcgatgcaa acggacgaat cacttttctc tccatctgag
     1141 gcaaccgtaa acatccaacg tccagagaac ggatcgtaaa gaacgtgcgg atcgaaagct
     1201 ccggtgctgc cggctggaag aacaggagtc caaaagccgc ctacgccatg ttcaggcacg
     1261 gtgctgatgg ctgctcccgt gagtttgtta tgcagacgta tctgagaatt agttacggtc
     1321 atggtgtggc ttggaccgac agcgccatta gtatcaggag gaatggccgt gttgttatcg
     1381 ttcagccctg atagttcgcg gtgaatggtg gcgaggctag cgtctgaaat gaactgggtg
     1441 cactttcggg tgtcgctcgc tcggatgttt gagcgtcaac atctggtacg tcctcggggc
     1501 ctgggaaagg cgcatggact gcctttggtg tgggaggggc ttgaggatga atattgagat
     1561 tcttctgtgc caattgcgtg aagtccacct gtgcggaggc ggttggcaat agcggtatcg
     1621 gagcaacctg taatgactgg ctgctgcgat tctggaactg gctgcttttg tcttcttgga
     1681 gacccctggg tagcttgcca ccattttcaa actcagcgcg cgcgcgaaca tacaaaccta
     1741 ggaagccaac tagaaacaaa gctgctgaga ttccggcaat caaatactgt ttgcgatgtc
     1801 ttcgacttga cagtcgcaac gctctctttg acatgaatcc catcttactt cgtttttgcg
     1861 ctcgggagca catccaaacg cttgcgcgct tcggcggctt ccggactctt cggatggcgt
     1921 tgcacgatct cgcgccaggc ggcgccgtcg taatggaatt tctttgccgc gcgaatcgaa
     1981 ggtgaaggtc actccctgac ggttgtagcg atcgaggcca ttgtaattca gatagtactc
     2041 aattcccgcg agcctcacgg cccgaaccgc tggttagtag gtctggctga attcttctgc
     2101 tgacctcaga gtcgcgagta cgtcagtccc gtctgtccct gatacttccc accgcgatct
     2161 tcgtaactca cgtcgcagtc ttcgtctgat tcgaggaaga tgacctggcc gatgccttca
     2221 ttaacataga cgcgcaaggg caggtctgcg agattgccga gttcaatgac caggcggccg
     2281 atccagcccg cttcgagcgg cgttgtgttg acgattagcc cagcccgcgc gtaggtgctc
     2341 ttgcccatgc agatgccggt gacgttgcgc ggcatgtgaa aagtttcgac ggtcaccccc
     2401 aaagcgtagg agtgcggcgg cagtagataa tatttcgagc cgtcttccgc tgtctgcaat
     2461 ggcggctcaa ccagcgacga ttcgtcgaag tgtttcggat cgatctcgcg tccgtgaatc
     2521 ggcgagaaca cacgaaagcc atcgtctgcc aagcgcatgt cgtaaccata acttgacgca
     2581 ccggctgaga tgattcggcg tccctcactt tcgcgcacca gacgttcttc gaacggttga
     2641 atgagttgcg catcttccgc catttggcga atccagcgat ctgatttgac tgtcatttga
     2701 ttgagtcctg tcagtaccac ctgcgtcagc gggtgggttt caagagcgcg tcaggataag
     2761 cgatcacgcg agccgacggc aagaagatcg agttgctggt agtgtcttag tttcagcttt
     2821 tctctgcgca gcctttgcga cctctgcgtc tctgcggtga gcgttttggc ggctaggatt
     2881 caccgcagag gcgcagagaa cgcagagttc gcgcagagta aatcaaacta agacactact
     2941 gagttgctga gcgtcagtga accttcactg ccacattatt agcagtgagc gaattcccgg
     3001 tcgcgcgctg caactcagca atcgctttgt tcaagtcagt ctgcgcgcgc aattcgttgc
     3061 tgagtacttc gtcaacgcag ctcatcgatg cgaatccaca aaggattcgt gcgcacgacg
     3121 gtggcaacct tcgtcgttgt cgaaacatag gtcccaacgt caactggtcg ctccagcacg
     3181 aaaccatcta tcggcgctgt gaccacagtg tacgaaagat ttcgccgcgc cagatcgact
     3241 tgcgtttgcg cgttagtcac ggtcgttcgc gccaccagca ccgctgcata gttttgccgc
     3301 gcctgagtga tcgccgattc gtacatctgc ctgagcgaat cctgttgtga ctttcgctga
     3361 tcgtattcgg cccgcgaaat gtcgcccgac tcgaccaact tctgcgcgcg ctgaaaattg
     3421 ctctcggcaa gatcgtaatt ggcacgcgcc gccgacacgt ccgccacttt cgtcggatcg
     3481 aattgctgac ctgcgcggag cccgatcttt tcttccgcct gcttcaccgc agccttagcg
     3541 ttatcgagtt gcgcgaccgc ttgatcgact cgcagtttgt aatcggcatc ttcgaggcga
     3601 accagcatct gacctttccg cacggcgctt cccatgtcca cgccgaccgc gacgatcttg
     3661 cccgccgttt gcggctgcac atcggtctgc acatcagccg cgaggctgcc ggtggcttca
     3721 aagaagcgcg gcagttgtcg cgagatcgca gccgtcgtcg aaacttcaat cactgatgcc
     3781 gccagactcg cgctggcgcc gttgttgttg ggctgtccgt tggaacaact gcaagcaagt
     3841 tggctcgcgc ctgcggccaa cgccagcaag acgattagtg tgagtttgat cgattgtcgt
     3901 gaagtcatct gctcgatttc tttctcttgg aattgtttct tgccttcttg ttcaccgagc
     3961 cattcggttg cttagctctg ctggcgacgc cgcgtaacag aatgtctgtg aactcgcgcg
     4021 cggcggcttc gttggaaatc ttgagcaagc gccgcttgcg atcccacaga ttgttgttca
     4081 gcgaatggtg aatcaccatg ccgatgaaag cccgcacgat gattgccggc tcaacgtcaa
     4141 tcattgcgcc gtcgcgctgc cgctggcgaa tgtagtcacc caggaacccg tacactcggc
     4201 gcacgaattt gtcccagaac atctgcgcca gctcgtgtcc ctccaacgct gaatgcaaca
     4261 gcaggcgttg aaagtcgggg tcacactcat tttgtttgag cgcgtcgagc gccagccgct
     4321 caaagaccgc cgcgtcatct tttcgctcga gcgcatccgc aaccacctga tacggatccc
     4381 gctcatcacc caaacaagcc ttctggtcga tgatcgcgct gtagagtttt ttcttggttg
     4441 caaaatggcg aaagaccatt gcctctgaca caccggcggc gagcgcaatc tctttcgttg
     4501 ttgtgccgcg aaagccgcgc cgcgaaaata cgcgcatcgc cacgcgcaga atttgcagcc
     4561 ggcgctctcc gccagccatg cgcgcgccac tagcggtgac gccgttttcc atcaggattc
     4621 tttttttcag aactctcaat gtctttgctt gcccatccga agtaagtact cacttaccac
     4681 tggcctgcct cgattgtcaa gggctttttt gtcgaattgc ttttcacgca accgagccgg
     4741 cccttttgtc gtatggagag tctgggatag cgagccaaaa caaatctttt atccaggcca
     4801 ggagcagaaa aatgccagaa gctaccgaaa acggacagaa tacgacgccg aaggcgtcaa
     4861 tcatttgtgg gagtgaaatg cacatgtcag aacttgaaga gacggcgcgg caatacggtc
     4921 ggaagatcgc tgcggccgca tcgcaagcgg gcgattatgt aagcgaaaaa gtcaacgtcg
     4981 tcggcgagaa gctcaaggac ttgcagggca aggacatcgg cgaaatcgcc ggcgaagcca
     5041 aagactacgc gcgcaaaaat ccaggccagg cgatcctgat ctcggcggcg gcgggtttgt
     5101 ttttgggatt gctgctgcgt ggtgggcggc gatagccggc tttcttgacg cttggcgcgc
     5161 gcgactttcg ctctctcggt attctccgtg tcctctgtgg tgaactttcc taatattgga
     5221 attcaaaacc gagggcacag agaacacggg gagatattta caaccccaac ttatccatct
     5281 tcgccttctc gtattctccg tcctcggcgg gatagcgaag cgacatggga atcttgcctg
     5341 cctctttcgc cagcgcccac acaacgcttt cgcccgccgg aacaattttc ggctcagccc
     5401 ggaagactgg atcggtgaac gcttcttcgg cgtcgatgag ttgccagccc ttgctcttga
     5461 acatttcgat caggttgccg agaaataatc cgttgagcaa gttgaagtgc atcagaatcg
     5521 tgtgcttcac cgggcggcca agcacttgct ttgcgagtga atcgtagtac tgcgcgcgat
     5581 cccacatgtg agcgaggtaa aagtcgcggt aaggtttgac gtcggcgcgc ggatccttct
     5641 gtagtcgagc cgccagacgc tgatcgataa tccaatcaga gttgtcaatg gtgacgtggc
     5701 cgatgcgata gccgtgttgt ttcagaaacg cgcgcacatg atcgcgcttg gcgggggtgt
     5761 tgccctcttt caaagctgga tagcgaaaga tcctgcggaa ctgcttgaac tccttcagaa
     5821 cttcctcggc gcgtgagata tcctgctcgt attcggcggc ggtaatcgtg gaattcaacg
     5881 aacgatgcga gtacgtgtga ttcccgatga tgtgcccggt ttcatcccag aatcggagca
     5941 gctttttacc gcgctcttcg ctgtcaacca tcccgccaac gacgaacagc gcggcctttg
     6001 cccggttcgc gctcaacaca tcgagaattg cccggttgcg cccttcggca gttaggtgca
     6061 cggcgttatg ccacgcgaaa tcgtccatcg tgatcgagaa ctgcggttga gtggaggagg
     6121 accctccgat tcgcggcaca ccgagcgcca ccgcaccaat gcccaatatc ctggtgaact
     6181 ctcttcgatt catggttgct ccttttgatc gggttactta gaccgttacc gcttcgcgat
     6241 actcgcccca gacgacgcgc agtcgattgc tgatctcgcc gacggtcgcg agcgcttcga
     6301 cgcaatcgag gattcgcggc aggacgtttt cggttccgcg cgctgcttct tcgagcctta
     6361 ccaacgacgt ttcgcaggcg atcgcgtcgc ggcgctcgcg tagtgaacgc acgcggtcga
     6421 tctgagattg ctcgacagcc ggat
//
LOCUS       DASZZE010000402         6020 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_210020, whole genome shotgun sequence.
ACCESSION   DASZZE010000402 DASZZE010000000
VERSION     DASZZE010000402.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6020)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6020)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6020
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_210020"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            138..1157
                     /locus_tag="VHD88_07750"
     CDS             138..1157
                     /locus_tag="VHD88_07750"
                     /inference="COORDINATES: protein motif:HMM:NF018028.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HVS21727.1"
                     /translation="MPEVLSDSSLDRVITGGDAIETDPNEATGPTDERPASTLIEFPG
                     ATRTIPEWRKQLSQRVREVQERRAREAAEAAAAAQEAESVSVALPSAQLELVPDLEQP
                     AMNPIVSKALERVDRARRGDFVGAGFAATAAAPAPVSDDLPEPLQPASEIGATKHKLV
                     VVSPGKPASKVRKPVRLIADGAEDAALSYLETYLSVPTIAPDPSDHHATFSRRIVAAV
                     LDLLLMALLAAPFAAAIEFADGNWSDPRTIGLMSGIAIVVMFTYLTISIALTGRTAGM
                     RLLSLRAIDARTGLIPTGGQSAKRALGFLLSLVSLGLGMIYALIDRDGRALHDRFSKT
                     VVVHD"
     gene            1300..2760
                     /locus_tag="VHD88_07755"
     CDS             1300..2760
                     /locus_tag="VHD88_07755"
                     /inference="COORDINATES: protein motif:HMM:NF017633.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT family protein"
                     /protein_id="HVS21728.1"
                     /translation="MDDRSIKKVVEEIAPLLIGCVPGKVFQLGPVSLAIDFRLREHGY
                     LFVSVDPALPRLHLIKRRARDLEKQSIAPTQFALKLRKDLSSTRVLSVEKDQDDRIVR
                     FQFAGEDELGQATQCALIAQLTGRASNLFWLDREGLIIHQARPARRRGQKVGEPYEAP
                     AMVGAQRNTASDSELLKTSESGIFTSASEAADAYYTSLLSQKAFNEDAARALADLRKK
                     ISRQENLLTQLHTDLASHGDAEEQKHIGDLLLANLSTAKRQRDRVTLIDYFAATTPLM
                     EIEADEKLTLPQEASRRFAIYSRSKRAVRQITSRIQLVRSGLDGLHSQLERLEKIIAE
                     RDEAALALLTGRKRERPTKTKHRREEKIPGTRRYLSSDGFEILVGRAARDNDHLTFKV
                     ARPNDLWLHAADYPGAHVVVRNSTRKELPHRTIIEAAQLAAHFSQAAKDPKVDVRYTF
                     RKFLAKPKGAASGLVRLSRVKNITVDPREVGAVARP"
     gene            complement(2822..4648)
                     /locus_tag="VHD88_07760"
     CDS             complement(2822..4648)
                     /locus_tag="VHD88_07760"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HVS21729.1"
                     /translation="MTPDPKQKQSADGEVVYRRVASPAERRAARSSGESRLDPTLLPL
                     IGGFAILLLLIIVLGNLSVRRLEDTSRQSLLLEHSLCARSALLLQLRVALIRLDKEAR
                     DRREADARHELQPPFDLPLINARAEVDKLLPLLDHAPLSEMPKWQKFHKDLAAYVEIT
                     TDRNRYSQEGFAKFRDVDAALKDIVNDSSIEQEQVFDRRDALQKAATRAIRTWNLFAV
                     LAGLAVAVATIWQVQRRFRQTKQSTERARREREFSNQILEGMVSAIAAIDRQDRIRSA
                     NAAFFRIFPHANVGSSIHDQVASPAGVKLLEAATASHVETATYRGRWQLSEDGAAGTF
                     DVYSSPVEIDNEHGQILTLVNVSEATKAEAALRRSESLAAVGEAAAQLAHEIKNPLGS
                     IRLGVEMLREYATNDDAVKTITLVERGIHHLNKLVVDVTQFSRHRQLDRSEVDLHELI
                     DSSIDLLSDRVREKETSIEKTYAETAINGRWDAEQMREVFVNLLANAIDASEAKSQVR
                     ISTELVGSSSGSRLIETITAPSTERARIVITDQGAGMDAKTQSRLFESFFTTKKRGTG
                     LGLSIVRQIIDLHGGTIEVESTLGKGTSFRVELPLEALDPGQ"
     gene            complement(4924..5622)
                     /locus_tag="VHD88_07765"
     CDS             complement(4924..5622)
                     /locus_tag="VHD88_07765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21730.1"
                     /translation="MQPGYQYKSPDYVPVKHVTCQCGQILLKGFAESKKHRTSVFHRQ
                     HRRIKKLLASSCVSFTEIGARVGVRSERIRQIADALEIKGHLRQKICTLGRRAREIEQ
                     ARLSDATLQNLRRVAESQLIKLELLPVEGTSRFECLRLVYLNGHLCRLAAAGFRRGKF
                     ITVRPLKITRDVEFAIYWQESTNLWLIFPRKNLPAGRTMFAIEPAQVGGNGKRHDWRD
                     YIDVWDSLKTDAGV"
     gene            complement(5678..>6020)
                     /locus_tag="VHD88_07770"
     CDS             complement(5678..>6020)
                     /locus_tag="VHD88_07770"
                     /inference="COORDINATES: protein motif:HMM:NF012688.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase"
                     /protein_id="HVS21731.1"
                     /translation="SIYGRIRPLAGINDRNANIRRAAEREAINMPIQGTASDIVKIAM
                     LHVDEAFRREGLSAKMLMQVHDELLVECPADEAGKVAKTLKREMESAVELDVPLIAEA
                     GVGDNWMDAKH"
BASE COUNT         1287 a         1737 c         1632 g         1364 t
ORIGIN      
        1 gggcttgggc tcttttggtt cttacgccca tcccctcggt ttcactaacg gagacccttg
       61 ctatgcagcc ttgctcttgt ggtgacgcgc acgatgacaa ctttgacgcc tgccccattt
      121 ctctatcgca acccgttatg cctgaagttc tgtccgattc atctctagat cgagtaatca
      181 ccggcggtga cgcgatcgaa acggatccga atgaagcgac ggggcccact gatgagaggc
      241 cagcctccac tttgatcgag tttcctggag ccacacggac tatccccgaa tggcgaaagc
      301 agttgagtca gcgcgttcgc gaagttcagg agcgacgcgc gcgtgaagca gcagaggcag
      361 ccgcggcagc acaagaggct gagtcggttt ccgtcgcgtt gccatcagcg caacttgagc
      421 tcgttcccga tctcgaacag cccgcgatga atccgatcgt gtccaaggcg ctggaacgtg
      481 ttgaccgcgc acgacgcgga gattttgtcg gggccggatt cgcggccaca gccgccgcgc
      541 ccgcgccggt ttcagacgat ctgcctgaac cgctccagcc cgcttcggag atcggcgcca
      601 cgaaacacaa actcgtggtg gtctcccccg gtaagcccgc gagtaaagtg cgcaagcccg
      661 tgcgtctgat cgcggacggc gccgaagacg cggcgttgtc atatctggaa acctatctat
      721 ctgtcccaac gatcgcgcct gatccttccg atcatcacgc cactttctca cgtcgaattg
      781 tcgcggctgt tttggatctt ctcctcatgg cacttctggc agcgcctttt gccgcggcga
      841 tcgaattcgc tgacggcaac tggtcggacc cgcgcacaat tggactgatg agcggtatcg
      901 cgattgtcgt gatgttcacg tatcttacga tttcgatcgc cctcaccggt cgcacagccg
      961 gtatgcgatt gctctcgctc cgcgcaattg atgctcgcac gggattgatt ccaacgggcg
     1021 gccaatccgc aaaacgagcg ctgggctttc tgctttcgct cgtctctctc ggtctgggca
     1081 tgatttacgc cttgatagat cgggatggcc gagccctgca cgatcgtttt tcgaaaactg
     1141 tcgtagtaca tgattgactc gtagattaag agtcctaagt tgcgacaggc gaaggcttcg
     1201 gctttcgcct tttgcttttc cgcgaaggag cgcacgcatc tttgcacacg cttcgtcggc
     1261 atcgtgccgg acctatgtta gttttctgct tgaatagcaa tggacgatcg atcgatcaag
     1321 aaagtagtcg aagagattgc gcctctgtta attggctgcg tgcccggcaa agtatttcaa
     1381 cttgggccgg tgtcattggc gatcgatttt cgactgcgtg agcacggcta tcttttcgtc
     1441 agcgtagatc ccgcgttgcc gcggcttcac ctgatcaagc gccgcgctcg cgatctcgaa
     1501 aagcaatcca tcgcgcccac ccaattcgcg ctgaagctga gaaaggacct gtcgagcacc
     1561 agagttctgt ccgtcgaaaa ggatcaagac gaccgcatcg ttcgtttcca gttcgctggc
     1621 gaggacgagt tgggtcaagc aacgcagtgt gcactaatcg cgcagctaac cggacgcgcg
     1681 tcgaacttgt tctggctgga tcgcgaaggg ctcatcattc accaggcgcg tccggcacgc
     1741 aggcgtggac aaaaggtcgg cgaaccttat gaagcacctg cgatggtcgg cgcgcaacga
     1801 aatacggcga gcgatagcga gctgctcaag acaagcgaaa gcggtatctt cacgtcggct
     1861 tccgaagctg cggatgctta ctacacttcg cttctttctc agaaagcctt caacgaagat
     1921 gccgcgagag cgctcgccga cttgcgaaag aagatctctc ggcaggaaaa tttattgacg
     1981 caacttcaca cggacctggc aagccatggt gacgccgaag agcaaaaaca cattggcgac
     2041 ttgctgctgg cgaatctcag caccgcgaag cgacaacgcg accgcgtgac gttaatcgat
     2101 tactttgctg cgactacgcc gctaatggaa atcgaggcgg atgagaagct aactctgccg
     2161 caggaagcat cgcgacgatt tgcaatctat tcgaggtcga agcgggccgt gcggcaaatc
     2221 acttcgcgca ttcaactggt gcgttccggt ttggatggtt tgcattctca actagagcgt
     2281 ttggagaaga tcatcgccga gcgggacgag gccgcactcg cgttgttgac cggacgaaag
     2341 cgtgagagac caaccaaaac taagcacagg cgcgaggaaa agattcccgg cacgcgacgc
     2401 tatctttcat ccgatggctt tgaaattctt gtcggacgcg ccgcccgcga caacgaccat
     2461 ctaactttca aagtcgctcg gccgaacgat ctctggctgc acgcggctga ttatccgggc
     2521 gcacatgtcg tcgtgcgtaa ctctacacgg aaagaacttc cgcaccgcac gatcatcgaa
     2581 gccgcgcagt tggcggcgca cttttcccag gcggctaaag atccaaaagt tgatgtgcgt
     2641 tacacttttc gcaaatttct cgcgaaacca aaaggcgccg cgtcgggcct ggtgcgcctg
     2701 tcgcgtgtca agaacatcac ggttgatcct cgtgaagtcg gggcggtagc ccgaccgtga
     2761 gggagggctc gaatcactac ttgagaagac acaaagacgt gagcccttgc ttacgcgcgg
     2821 gctactgccc cggatcaagc gcttccaacg gaagctcaac gcgaaaactt gtgcccttgc
     2881 ccagcgtgct ctcgacttcg atggttccgc cgtgtaggtc gatgatctgc cgaacaatgg
     2941 acaatcctaa gcccgtgccg cgcttcttcg tggtgaagaa tgattcgaac agacgagact
     3001 gcgttttagc gtccatgccg gcgccttgat cagtgattac gatgcgcgcg cgctcggtgg
     3061 acggggcagt tattgtctcg atcaatctag acccggagga agaaccaacc aactccgtcg
     3121 agattctcac ctgcgacttc gcttcgctcg cgtcgatcgc gtttgccagc aggttaacaa
     3181 agacttcgcg catctgctca gcgtcccatc gcccgttaat cgccgtctca gcgtaggtct
     3241 tttcgataga cgtctctttc tcgcgcacgc gatcagaaag caggtcgatg ctcgaatcga
     3301 tcaattcgtg caagtcaact tcggatcgat ccaactgacg gtgtctggaa aactgagtaa
     3361 catcgacgac cagtttgtta aggtgatgaa tgccgcgctc aaccagcgta atcgttttca
     3421 ccgcgtcatc gttggttgcg tactctcgca gcatctcgac tcccaggcga atgctgccga
     3481 gcgggttctt gatctcgtgt gcgagttggg ccgcggcttc gcccaccgct gcgagcgatt
     3541 cgcttcgccg caaagcggcc tccgcctttg ttgcttcgct gacgttaacc agagtcaata
     3601 tctgcccatg ttcgttgtca atttccaccg gcgacgaata aacatcgaac gtgcccgccg
     3661 cgccgtcttc gctaagctgc cagcgcccgc gatacgtcgc ggtctcgacg tgagacgcag
     3721 tcgcagcttc caacaacttg actccggcag gcgaagcgac ctgatcgtga attgacgagc
     3781 ccacgttggc gtgcggaaag atgcggaaga aggcagcgtt cgcgctgcga atgcgatcct
     3841 ggcgatcaat tgcggcgatc gcgctgacca tgccctccag aatttgattg ctgaactcac
     3901 gttcgcggcg cgctctctct gtgctctgct tcgtttgacg aaatcggcgc tgcacctgcc
     3961 agatcgtcgc aactgcaact gccaaaccgg ccaggacagc aaacaggttc caagtcctga
     4021 tcgcacgagt cgccgctttt tgcagcgcgt cgcgtcgatc aaagacctgt tcctgctcga
     4081 tcgaagaatc gttgacgata tcctttagag cagcgtctac gtcgcggaac ttggcaaaac
     4141 cctcttgtga ataccgattc ctatccgtag tgatttcgac gtacgccgcc agatctttat
     4201 gaaacttttg ccacttcggc atctcagaca gcggcgcgtg atcgagcaac ggcaaaagct
     4261 tatctacttc cgcacgtgca ttgatcaatg gcagatcgaa aggaggctgg agttcgtgac
     4321 gcgcgtcggc ttccctacga tcgcgcgctt ccttgtcgag tcgtatgaga gctacgcgga
     4381 gttgcaggag gagggccgac cttgcacaca atgagtgttc gaggaggagg gactggcggc
     4441 tggtgtcctc cagacggcgc acactcaagt ttcccaaaac gattatcagc agcagaagaa
     4501 ttgcaaagcc gccaatcagc gggagcagcg tcgggtcgag tcgcgactcg cccgatgatc
     4561 gagcagcacg tctctcagca ggcgacgcaa cgcgacgata tacgacttcg ccgtcggctg
     4621 attgtttttg ttttgggtct ggcgtcattg aaggcggtca cgtaagtatg aattgaaaat
     4681 tagaaattga aaattgcaaa ttgctgccgc gcagttcacg cccgcccgcg cgttaacgaa
     4741 gctacccatc ccggtggtaa ggcgtatcct ttatgcttcg agtgagcgat cacccaactg
     4801 gtagcttgcc attgtgttta ctctccgaaa agaaaacgac gtctgaatcg cgtcgcgctt
     4861 ggaaacgccc gaatcccgtc agtgcagcca acgaagatgc gaggaagaaa ccgatgataa
     4921 aagctaaaca cccgcatctg ttttcagtga atcccaaacg tcaatatagt cgcgccagtc
     4981 gtggcgtttg ccgtttccgc ctacctgcgc cggttcaata gcgaacattg ttcgtcccgc
     5041 aggtaggttc ttcctgggaa agatcagcca cagatttgtg gactcttgcc agtaaatcgc
     5101 aaactctaca tcacgggtga ttttcagcgg gcggaccgta ataaattttc cccttctgaa
     5161 acccgccgct gcgagcctac aaagatgacc gttcaggtaa acaagacgca agcactcgaa
     5221 gcgacttgta ccttcaacag gaagcagttc gagttttatt agctggctct cggcgaccct
     5281 gcgaaggttt tggagcgtgg cgtcgcttaa tcgggcctgt tcaatctctc gcgctcgacg
     5341 gccgagcgta caaatcttct ggcgaaggtg gcccttaatc tccagagcgt cggcgatctg
     5401 tcggattcgc tcgcttctaa cgcctaccct tgcgccaatt tccgtgaacg aaacacaaga
     5461 agaagctagc agtttcttaa ttcgccgatg ctgccggtga aagacacttg tacggtgttt
     5521 ctttgactct gcaaaaccct tcaacaggat ttgtccgcac tggcacgtta catgcttgac
     5581 agggacgtaa tctggactct tgtactggta acctggttgc atgattgttc cttcacttca
     5641 atttgcaatt ctcagttttc aattttcaac tccttcgtta atgcttcgca tccatccagt
     5701 tgtcacccac gccggcttcc gcgatcagcg gcacgtcgag ttcgaccgcg gattccatct
     5761 cgcgcttcaa agtctttgcc accttccccg cctcgtccgc cgggcattcg accagcagct
     5821 catcatgcac ctgcatcaac atctttgcac taaggccttc gcgccgaaaa gcttcgtcca
     5881 cgtgcagcat ggcgattttc acgatgtcgc tcgcggtgcc ctgaatcggc atgttgatgg
     5941 cttcgcgttc ggcggcgcgg cgaatgttgg cgttgcgatc gttgatgccg gccagcggac
     6001 gaatgcgacc gtagattgac
//
LOCUS       DASZZE010000403         1872 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_143040, whole genome shotgun sequence.
ACCESSION   DASZZE010000403 DASZZE010000000
VERSION     DASZZE010000403.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1872)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1872)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1872
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_143040"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..959
                     /locus_tag="VHD88_07775"
     CDS             <1..959
                     /locus_tag="VHD88_07775"
                     /inference="COORDINATES: protein motif:HMM:NF024545.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HVS21732.1"
                     /translation="REMKERLDTLRQNGMPEQQATSEVEKHKAELIAALINEQLLLQK
                     GKQLDFTEKVEAEVNKRMLETATENHLGTMDKLCAAMKDAGLNCEDVRRTMRVEIMKQ
                     AVFEGEVDSKVFFAPTVDELHRYFDAHKDKFLKPETVELSEIFLSLAGKPEADVKARA
                     EKLVAQLRGGADFCALAAANSERQAEAPGQKPCKVGLFQLRDLRPDIAGAIKNVKAGG
                     VSDPLRSDEGYQILRVDARTAGSSTPTFNENSVRQAMTEERSPKAREDYLQGLRNDAY
                     VKIADSYRASVEPLLKIVPPAAATKRSTEKKKGRLLGILPKP"
     gene            1243..1473
                     /locus_tag="VHD88_07780"
     CDS             1243..1473
                     /locus_tag="VHD88_07780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21733.1"
                     /translation="MKEFKKLPINVQRLYRKQEDVFKENWRDTRLKVKKLKDHPLPFS
                     FRITRAYRVLFVFVDSDTALFATIGHRKDVYD"
     gene            1445..>1872
                     /locus_tag="VHD88_07785"
     CDS             1445..>1872
                     /locus_tag="VHD88_07785"
                     /inference="COORDINATES: protein motif:HMM:NF013380.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HVS21734.1"
                     /translation="MAIAKMFTIKPFKIRDIEINPPLILSPMAGVTDVSFRRLLKRRG
                     GIGLTVSEFISVEGLTRNNPKSKRQMRFYEDERPFAVQVFGAEPERMRMAAEMAQEIG
                     ADILDVNCGCPAPKVVKHGGGSGLLRDLQRLETILKEIKKA"
BASE COUNT          463 a          503 c          541 g          365 t
ORIGIN      
        1 agcgcgagat gaaagagcgc ctcgacacgc tcaggcaaaa cggaatgccg gagcagcagg
       61 ctactagcga agttgaaaag cacaaggccg aactgattgc cgccctgatc aatgaacagt
      121 tgctgctgca aaaaggcaaa caactcgatt tcactgaaaa ggtcgaggcc gaagtcaaca
      181 agcggatgct ggaaaccgcc accgagaatc acctcggcac gatggacaag ctttgcgcag
      241 cgatgaagga tgcgggactg aattgcgagg acgtgcgtcg aacgatgcgc gttgaaatca
      301 tgaagcaggc ggtgttcgaa ggcgaggttg attcgaaggt ctttttcgca cccaccgtgg
      361 acgaactgca tcgttacttt gacgcgcaca aggacaagtt cctcaaaccc gaaacggtcg
      421 aactctccga gatttttcta agtctcgccg gcaaaccgga agcggacgtc aaagcgcgcg
      481 ccgaaaaact cgtagcgcag ttgcgcggcg gcgcggactt ttgcgcactg gccgcagcca
      541 attcagaacg acaagccgag gcccctggcc aaaagccgtg caaggtcggc ctctttcaat
      601 tgcgcgatct gcggccagac attgcgggcg cgatcaagaa cgtgaaggcc ggcggcgtca
      661 gcgatccttt gcgttcggac gagggctatc agatcctgcg tgtggacgca cgcacagcgg
      721 gcagcagcac tccgaccttc aacgagaaca gcgtgcgtca ggcaatgacc gaggagcgtt
      781 cgccaaaagc gcgtgaggat tacctgcaag gattgcgcaa cgatgcctac gtcaagatcg
      841 cggacagcta tcgcgccagc gtcgagccac tgctcaagat cgtgccgccc gcggccgcga
      901 ccaagagatc cacggagaaa aagaagggcc ggctgctggg aattctgccg aagccctgag
      961 acttaatgcg gtaacacctg ttcgcagctt atgagtcaga atcttacaat taagctaaat
     1021 cagacagaaa tgaagcgctt gagtcggttg gctctgcgtt acggtctgtc gctgcctgag
     1081 ttaacacgca aagtgctcgt tgaactggaa gaaacttttc ctcacgagtc gttcgaagat
     1141 tacgaggagg cggaaggtct taaggcatcc ttcgaacgcg cttttggtga ctggcgttct
     1201 ggccgcgtcc agacccggct atgaagattg tttacggaat tcgtgaaaga atttaagaag
     1261 ttgccgatta acgtgcagcg cctgtaccgc aagcaggaag atgttttcaa agaaaactgg
     1321 cgcgacacca ggctcaaggt caagaagctg aaggaccatc cgcttccgtt ttcattccga
     1381 atcactcgcg cataccgcgt cctctttgta ttcgtcgatt cagataccgc gttgtttgcc
     1441 actattggcc atcgcaaaga tgtttacgat taagcccttc aagattcgcg acatcgaaat
     1501 caacccgccg ctgattcttt caccgatggc gggcgtcact gacgtttcgt ttcggcgctt
     1561 gctgaaacgg cgtggcggca ttggcctgac tgtttccgaa ttcatctcag tcgaaggcct
     1621 gacgcgcaac aacccgaagt cgaaacgtca gatgcgcttc tatgaagacg agcgcccgtt
     1681 cgcggtgcaa gtctttggcg cggagcctga gcgcatgcgc atggccgccg agatggcgca
     1741 agaaattggc gcggatatcc tggacgtgaa ctgcggctgt cccgcgccga aagtcgtgaa
     1801 gcacggcggt ggctcggggc tgctccgcga tttgcagcga ctcgaaacga ttctcaaaga
     1861 aatcaaaaag gc
//
LOCUS       DASZZE010000404         2764 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_324865, whole genome shotgun sequence.
ACCESSION   DASZZE010000404 DASZZE010000000
VERSION     DASZZE010000404.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2764)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2764)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2764
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_324865"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..789)
                     /locus_tag="VHD88_07790"
     CDS             complement(<1..789)
                     /locus_tag="VHD88_07790"
                     /inference="COORDINATES: protein motif:HMM:NF013094.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HVS21735.1"
                     /translation="MIDRYSRQILFDGIGKEGQRRLLNSRALIVGCGALGSAQAESLA
                     RAGVRNLRIADRDFVESSNLQRQTMFTERDAQERLPKAIACANHIREINSEIEVDPEI
                     VDVNHSNIERLIQDCDVVLDGTDNFATRYLINDACVKHKINWIYGAAVGSYGVTMTIR
                     PNESPCLRCVFPEAPPAASAPTCDTAGVIMPIISVVAAVQVSEALKLLTNQIDNLHRS
                     LMQFDVWRNEWRRISLREPLADCSTCGLRRFETLVADNRELAAIL"
     gene            complement(791..2431)
                     /gene="aroE"
                     /locus_tag="VHD88_07795"
     CDS             complement(791..2431)
                     /gene="aroE"
                     /locus_tag="VHD88_07795"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: protein motif:HMM:TIGR00507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004764 - shikimate 3-dehydrogenase
                     (NADP+) activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HVS21736.1"
                     /translation="MAEERNEHRLALSLMKTNEVRICVPVCVERASELAGAVKRAAEV
                     ADIIELRLDYLSETVLAQSYKEIWAALASRRRPMILTLRPAEYGGRRALSVEDRLLCW
                     LKNSWWQKEPRADFCDLELDLAVSLPRQSEGFDVVLSGKCDWTRIICSHHDFVGVSSD
                     LEKIYERMAATPAHVLKIAVQADDALDCLPVFRLLDRARREGREMIAIAMGQAGIMTR
                     ILGPSRGAFLTYGSLDDESATAPGQLTARELREIYRIDQINQQTEIIGLIGRPVSHSV
                     SPHIHNAAFAASEVNAVYIPFEVGDAAQFMSRMIHPRSREMDWNLRGLSVTAPHKRAV
                     MNCLDWVEPAAKEIGAVNTIVVEDNELHGYNTDTLGFISPLREKYGALNGARCAIIGA
                     GGAARAALSGLRNENGQPTLFARDVLKAKPVAEEFGVECRPLAGARFDGFDILVNATS
                     LGTRGEHENATPATAEQLRGVRLAYDLVYNPIETRFLREAQIAGCETIAGIEMLIAQA
                     IEQFKLWTGKQPDVEIMRRAAMKALSPESNIQHLTSNI"
     gene            complement(2474..>2764)
                     /locus_tag="VHD88_07800"
     CDS             complement(2474..>2764)
                     /locus_tag="VHD88_07800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21737.1"
                     /translation="VKYSPVGHLWWYWLLIPAFTFLGRGISDIIRARQVKATPTAGQP
                     QMTAGPPRESFPARRTGELMPPVPSVTEGTTRHLSAEAPTKVFESLDSQKPS"
BASE COUNT          622 a          825 c          700 g          617 t
ORIGIN      
        1 taaaatagcc gcgagctcgc gattatccgc aactaaagtt tcgaagcgac gaagtccgca
       61 cgtcgaacaa tcagccaacg gctcacgaag cgaaatgcgc cgccattcat ttcgccaaac
      121 gtcaaactgc ataagcgatc ggtgcaagtt atcaatctga ttcgtcaata gtttcagcgc
      181 ctcgctcact tgcacggcag caacgacgct gatgattggc ataatcacgc ccgcagtatc
      241 acacgtcggc gcgcttgcgg cgggcggtgc ctctggaaat acgcaacgca ggcacggcga
      301 ctcgtttggt cgaatcgtca tcgtcacgcc gtacgagccc actgccgctc cgtaaatcca
      361 attgattttg tgcttgacgc aggcgtcgtt gatcagatag cgcgtcgcaa aattgtccgt
      421 gccgtccaac acgacgtcac aatcctgaat caggcgctcg atgttcgaat gattcacatc
      481 gacgatttcc gggtcgactt caatttccga attgatttcg cgaatgtgat tggcgcaagc
      541 aattgctttc ggcaaacgct cttgcgcatc gcgttcggtg aacatagtct ggcgttgcag
      601 atttgaagac tcgacaaaat cgcgatcggc gattcgcaag ttacgaacac cggcgcgcgc
      661 caggctttcg gcttgcgctg aaccaagcgc gccacaacca acgatcaagg ctcgcgagtt
      721 gagcaaacgg cgttggcctt ctttgccgat cccgtcgaaa agaatttgcc gactgtaacg
      781 atcgatcacg tcagatatta gatgtcagat gctggatgtt agattcaggc gacaacgcct
      841 tcatcgccgc tcggcgcatg atctcaacat caggttgctt gcccgtccac agtttgaact
      901 gctcgatagc ctgcgcgatt agcatttcga ttccggcgat cgtttcacat ccggctatct
      961 gagcctcgcg cagaaatcgc gtctcgatcg gattgtaaac gagatcataa gccaaccgca
     1021 ccccgcgaag ctgctcagcg gtagctggcg ttgcgttctc gtgttcaccg cgcgtcccca
     1081 gcgaggtcgc gttcaccagg atgtcgaaac cgtcgaagcg cgcgcccgcc aaggggcggc
     1141 actcaacgcc gaactcttcg gccaccggct ttgctttcaa aacatcgcga gcgaacaacg
     1201 tcggttgccc attctcgttc cgcagtcccg acaaagcagc tcgcgctgcg cctccggcac
     1261 cgataatcgc gcaccgcgca ccattcaacg caccgtactt ctcgcgcagc ggtgaaatga
     1321 aacccaaagt gtcggtgttg tagccgtgca attcgttgtc ttcaacgacg atcgtattca
     1381 ccgctccaat ttctttggct gccggctcaa cccagtcaag acaattcatc acggcacgtt
     1441 tgtgcggcgc agtcacgctt agcccgcgca ggttccaatc catttcgcgc gaacgcgggt
     1501 gaatcattcg actcatgaat tgagccgcat cgccgacttc gaagggaatg taaaccgcgt
     1561 tcacttcaga ggcggcgaaa gcggcgttgt gaatgtgcgg agaaacggag tggctaaccg
     1621 gccggccgat cagcccaata atttcagttt gctgattgat ctgatcgatg cgatagatct
     1681 cgcgcagctc tcgcgccgtc aattgtcccg gagccgtcgc gctttcatca tcaagcgatc
     1741 catacgtgag aaacgcgccg cgcgatggtc caagaattct cgtcataatc ccagcctggc
     1801 ccatcgcaat cgcgatcatc tcccgacctt cgcgtcgagc gcgatcaagc aagcgaaaga
     1861 ctggcaagca atcaagtgca tcgtcagcct gtaccgcgat cttcaaaacg tgcgcgggcg
     1921 ttgccgccat tcgttcgtag attttttcga ggtcggaaga aacgccgacg aagtcgtgat
     1981 gtgagcatat gattctcgtc cagtcgcact ttcccgataa gacaacatca aatccttcgc
     2041 tctgcctcgg aagcgaaacc gctaagtcga gttccaagtc acaaaagtct gctctcggtt
     2101 ccttctgcca ccatgaattc ttaagccagc aaagcagccg gtcttcgacg cttaaggcac
     2161 gtctgccgcc gtactctgcc gggcgcagag tcaggatcat cggccgtctt cttgaagcga
     2221 gcgctgccca aatttcttta tagctttgcg cgagtaccgt ctccgacaag taatccagcc
     2281 gcaactcaat gatgtccgcc acttccgccg cacgcttgac tgcaccggcc aactcactcg
     2341 cgcgctcgac gcaaacagga acacaaattc tgacctcgtt cgttttcatc aaagacaacg
     2401 cgaggcgatg ctcgttacgc tcttcagcca actacatcgc ctcattctga gtttgattcg
     2461 agtcgtcggt ttttcaggac ggcttctggc tatccaaaga ttcaaaaacc tttgtgggtg
     2521 cttcggcgct gagatgccgc gtcgtgcctt cagtcacact gggcacggga ggcatcaact
     2581 ctccagttct gcgcgcagga aaactttccc gaggcggccc ggcagtcatc tgcggttgtc
     2641 ccgcggttgg agttgcctta acctgtctgg cgcgaatgat gtctgaaatg cctcttccga
     2701 gaaatgtgaa tgcaggaatc aacagccagt accaccagag atggcctacg ggactatatt
     2761 ttac
//
LOCUS       DASZZE010000405         2603 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_143185, whole genome shotgun sequence.
ACCESSION   DASZZE010000405 DASZZE010000000
VERSION     DASZZE010000405.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2603)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2603)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2603
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_143185"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..281)
                     /locus_tag="VHD88_07805"
     CDS             complement(<1..281)
                     /locus_tag="VHD88_07805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21738.1"
                     /translation="MRTRRIVVGSIALVLVMAAISVFAQINRPYRNGSVWSIGFIRIK
                     PGMDTAYMNYVAGEWKAEQEAQKKDGNILSYKVMSVEGHSTNEFNLMLMT"
     gene            complement(457..1803)
                     /locus_tag="VHD88_07810"
     CDS             complement(457..1803)
                     /locus_tag="VHD88_07810"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HVS21739.1"
                     /translation="MSALLTQMSSTMTPTQLHRRNFLSLTGKGLGLAALSSSSVGALL
                     KNIQAATKSVAHLTPEQAAMDEDFWFEIQRAFSVTRGIINLNNGGVCPSPRIVTEALV
                     RYIWQQEDATAYTMWQILEPQSETIRTGLAELFGCDREEIAITRNASESLETLLLGMD
                     LKSGDEILTTTQDYGRMLTTIRQREQREGIKLNLIKIPIPPKNINEITAAFERAITPR
                     TRLLQIAHQINLTGQITPVKAVCQMARRHGVETIVDGAHSFAQFYFKQEDLDCDYFGT
                     SLHKWLYAPKGTGLLYIRREKIAKVWPLFAAEDKQKSDIRKFEEIGTHSAAPKLAIGE
                     AMLFHHGIGGKRKEARLRYLSRYWMDKLKDIPRVRFNTSFDPGQMCAIANVQIEGMDQ
                     GKIGSYLFSKHHIFTTPIVHEEFTGIRITPNLYTTLPELDRFCELMAEIARKGLPA"
     gene            complement(1927..>2603)
                     /locus_tag="VHD88_07815"
     CDS             complement(1927..>2603)
                     /locus_tag="VHD88_07815"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HVS21740.1"
                     /translation="NRTGAEALTGLPQAAALSPAELVELATHGAVILDVRDAAEFGGG
                     HVPGALNIGLGGQFASWAGSLIPMIAPIAIVAALDERIEEARLRLARVGLENVQGYLA
                     GGMNAWREAGLEVAVVRQISVAELKALLEKESKLQIVDVRRPAEYQSGHAPRAVTAPL
                     SILKERAPALGLDRTKPTAVICAGGYRSSAATSIMQQAGFANVLNVAGGTKAWIDAGY
                     EVEIPG"
BASE COUNT          518 a          762 c          733 g          590 t
ORIGIN      
        1 gtcatcagca tcagattaaa ctcgttcgtt gagtgaccct caaccgacat caccttgtag
       61 gaaagaatgt tgccgtcttt cttctgcgcc tcttgctcgg ccttccactc tccggccacg
      121 taattcatat aagccgtgtc catccccggc ttaatcctga tgaacccgat gctccacacc
      181 gacccgttgc gatagggccg attgatttgg gcaaagaccg aaatagcggc catcaccagc
      241 accaaagcga ttgaacctac aacaatacgt ctagttctca tttgagactc ctcatacccg
      301 tacaagaatg cgctttgggg ggcagcgacg tacgggatgc tcgctgtctg aagccgtgaa
      361 tgcggcaggt gagtggttgc cgaggatttt cgaatagctt gttgcgaagg caatctatga
      421 gaaaagcgcg gtcgtgtcaa tgtcggtaaa aggttctcaa gccggcaagc ccttgcgcgc
      481 gatctccgcc atcagttcgc agaagcgatc gagttccggc agcgtcgtgt atagatttgg
      541 cgtgatgcga atgccggtga attcttcgtg aacgatcggc gtcgtgaaga tgtgatgctt
      601 gctgaacaga tagctgccaa tctttccctg atccattcct tcgatctgga cgttggcgat
      661 cgcgcacatc tgccccggat cgaacgaggt gttgaagcgc acccgaggga tgtccttgag
      721 tttgtccatc caatagcgcg aaagataacg caaccgcgct tctttgcgct tgccgccgat
      781 gccgtggtga aacagcatcg cttcgccgat ggccagcttg ggcgcggctg agtgtgtacc
      841 gatctcttca aacttgcgga tgtcgctctt ctgcttgtct tcggcagcga acagcggcca
      901 gaccttggcg atcttctccc gcctgatgta aagcaggccg gtgcctttcg gcgcgtagag
      961 ccacttgtgc aagctcgtgc caaagtagtc gcaatccaaa tcctcctgtt tgaagtagaa
     1021 ctgcgcaaac gaatgcgcgc cgtcgacaat cgtctcgacg ccgtggcgcc gcgccatttg
     1081 acagaccgct ttgactggag tgatttgtcc ggtgaggttg atctgatgcg ctatctgaag
     1141 caaacgtgtc cgcggcgtga tcgctcgttc aaacgcggcc gtgatctcgt taatgttctt
     1201 tggcgggatt ggaatcttga tcaggttcag ctttatgcct tcgcgctgtt cacgctgtcg
     1261 gatcgttgtg agcatgcggc cataatcctg cgtcgtcgtg agaatctcat cgccggattt
     1321 caagtccata ccgaggagca aagtctccag cgactcggaa gcgttgcgag tgatggcaat
     1381 ctcttcgcga tcacagccaa acagctccgc cagtccggtg cgaatcgttt ccgactgcgg
     1441 ctcgagaatc tgccacatcg tgtaggccgt cgcgtcttcc tgttgccaga tgtagcgcac
     1501 caatgcctcg gttactattc gcggactggg gcagactccg ccgttgttca gattgatgat
     1561 cccgcgagtg acggagaacg ctctctggat ttcgaaccag aagtcttcat ccatcgccgc
     1621 ttgttcgggc gtcagatgcg cgacgctttt ggttgcggct tgaatgtttt taagcagcgc
     1681 gccgacgctg gatgatgaaa gcgcggcgag tccgagacct ttgccggtca aggaaagaaa
     1741 gttgcggcga tgaagttgag ttggcgtcat ggttgaactc atctgtgtta gcagcgcgga
     1801 catacgcgat gaagtcagta ccatccgcgt aagcggatgg gctcatctct caatccgcgt
     1861 tctgactgaa actgttgact cgctgaaact aaagccccac ccgctgacgc ggctcgtact
     1921 gacttcctat ccaggtatct cgacttcgta acccgcgtca atccacgcct tggttccgcc
     1981 agcaacgttc agcacattcg cgaaacccgc ttgctgcatg atgctggtgg cggcgctgga
     2041 gcgataaccc ccggcgcaga tcaccgcggt cggtttcgtc cggtcgagcc cgagcgccgg
     2101 tgcgcgttct ttcaagatcg acagcggcgc cgtgaccgcg cgtggcgcgt gaccactctg
     2161 gtattccgcc ggacggcgca catcaacgat ttgcaatttg gattccttct cgagcaacgc
     2221 cttcagctcg gcgacgctga tctgtcgaac gactgcgact tcgagaccgg cttcccgcca
     2281 cgcattcatc ccgccggcga gataaccttg cacgttttcc aaacccacgc gcgccaaacg
     2341 cagccgcgct tcttcaattc tttcatctaa ggcagcgacg atcgcaatcg gcgcaatcat
     2401 cgggatcagg gaacccgccc aggacgcgaa ctggccgccg agtccgatgt tgagcgcgcc
     2461 gggaacatgg ccgccgccga actccgcggc gtcgcgaacg tcgagaatca ccgcgccgtg
     2521 cgtcgcgagc tcgacaagtt ccgcgggcga cagggccgcg gcttgcggca gcccggtcag
     2581 ggcttcagcg cccgtgcgat tga
//
LOCUS       DASZZE010000406         3016 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_324985, whole genome shotgun sequence.
ACCESSION   DASZZE010000406 DASZZE010000000
VERSION     DASZZE010000406.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3016)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3016)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3016
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_324985"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..273
                     /locus_tag="VHD88_07820"
     CDS             <1..273
                     /locus_tag="VHD88_07820"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HVS21741.1"
                     /translation="EKNAAVFALPAEISPARTAEGRERSVAVRRAVCALPPDLRQVVV
                     MKEFEELTFQEISEALELPLGTVKSRLYTALRQLQMRLQKFGEQVM"
     gene            310..1041
                     /locus_tag="VHD88_07825"
     CDS             310..1041
                     /locus_tag="VHD88_07825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21742.1"
                     /translation="MNERPVCHRAEDLVTYLYGEASAADAHDFTGHMQQCDACRAEFA
                     IFNQVHESIVLWRNEALGAAFSPAAQPTLVGMPSVSDAAQSVQRERKLSAVAALREFF
                     RVSPLWLRGATAFASLLLCALALLAVSRMGQRPVQVANKGEEPKVYTVTDFKNAVAKE
                     VENQTNRRKNAYNSSQAQTEVGVKSVQQRTPTRSEVAVYREPGRSRTKGLTRQEREQL
                     AADLRLIPGKDEVDLPFVFSDEPNR"
     gene            1082..1657
                     /locus_tag="VHD88_07830"
     CDS             1082..1657
                     /locus_tag="VHD88_07830"
                     /inference="COORDINATES: protein motif:HMM:NF019430.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Spy/CpxP family protein refolding chaperone"
                     /protein_id="HVS21743.1"
                     /translation="MKRQTNKRRSLMAAAAFLLLAAISTQTRAQAQTQQNPVEPSQAP
                     ANQPNQVPDLIGSLNLTPEQIQKWRAINADLRAEQQAANQHLRQARRALADAIESPTS
                     NEDLIKQRAREVSEAQAATTQLQALKEARILQVLTPEQRVKLREIRERVRVANQQQRN
                     GLGRRQNGRNNNANAPLRPNQRKLMRQQPKR"
     gene            1863..2630
                     /locus_tag="VHD88_07835"
     CDS             1863..2630
                     /locus_tag="VHD88_07835"
                     /inference="COORDINATES: protein motif:HMM:TIGR00056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HVS21744.1"
                     /translation="MNIVTRLLLELQEMSLLAARAARGLFKKPHYVPETITQMDSIGV
                     GSLTIIILTGFFTGGVLTLQTYQTLASYGAVDQIGYLIAISLVRELGPVLTALMVTGR
                     VVSAISAELGSMVVSEQIDAMRALGTDPVRKLVAPRILALIITLPLLTLIADVVGIVG
                     GWTVSTWLYGLPSAMFTTSVRDGITTDDIVGGIVKPLVFAFLMGTIACHKGLKTEGGT
                     VGVGRSTTTAVVTASIIVIVADFFLAQALQVILGTTK"
     gene            2633..>3016
                     /locus_tag="VHD88_07840"
     CDS             2633..>3016
                     /locus_tag="VHD88_07840"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HVS21745.1"
                     /translation="MSQASIDRPSTQAPDNRVSDNAAESTFREVDDSHRAIPAIEFRD
                     VTMIFDDRKVLDNLSFKVMKGETKIILGGSGCGKSTTIKLVLGLLKPDSGQILVDGED
                     VTNYSEVDMMRVRKKIGMIFQEGALF"
BASE COUNT          708 a          798 c          875 g          635 t
ORIGIN      
        1 gaaaagaacg cggcggtctt tgctttgccg gcagagattt cgcctgcgag aaccgcagag
       61 ggcagagagc gaagcgtggc agtgagacga gcagtttgcg cgctgcctcc ggacctgcga
      121 caggttgtgg tgatgaaaga attcgaagaa ctaacgttcc aggaaatatc agaagcgctc
      181 gagctaccgc tgggcacggt gaagagccgt ttgtacactg cgctcaggca gttgcagatg
      241 cgcttgcaga aattcggcga gcaggtcatg tgacctaatc gcgaatgcga ggtagttgag
      301 atgcgaaaca tgaatgaacg accagtttgc catcgggcag aagacctggt cacttatctg
      361 tacggcgagg cgagtgccgc cgacgcgcac gactttacgg gtcacatgca acagtgcgac
      421 gcgtgccgcg ctgagtttgc gattttcaac caagtgcatg aatcgatcgt gctgtggcgc
      481 aacgaggctc tcggcgcggc gttcagtccc gcggcacagc caacgttggt tgggatgccg
      541 tctgtctcag atgctgcgca gtccgtgcag cgtgaacgaa aactttcggc tgtggcggca
      601 ctgcgcgaat ttttcagagt ttcacctttg tggctgcgcg gcgcaacggc attcgcttcg
      661 ctcttacttt gcgcgctcgc gctgctggca gtttcgcgga tggggcaacg accagttcaa
      721 gtggcgaaca aaggagaaga gccgaaagtt tatacggtca cggatttcaa gaacgccgtc
      781 gcgaaagaag tcgaaaatca gaccaaccga aggaagaatg cttacaactc atcgcaggcg
      841 caaactgaag taggcgtgaa gtcggttcaa cagcgaacgc ccactcgtag cgaagtcgcg
      901 gtctatcgcg agccaggtcg atcacgcacc aaaggtttga ctcggcaaga gcgcgagcag
      961 ttggcagcgg acctgcgttt gattccgggc aaggatgaag tcgatctgcc ttttgtgttc
     1021 agtgatgagc ctaatcgatg atgcttcacg cgacacgcgg aagcgagaga tggtaggaaa
     1081 tatgaaacgc caaactaata aacgaagaag cttgatggcg gcagcggcgt tcttgctgct
     1141 ggcggctatc tcgacacaaa caagagcgca agctcagact caacaaaacc cagttgagcc
     1201 ctcgcaagcg ccagccaatc agcctaatca ggtgccggac ttgattgggt cgttgaactt
     1261 gacgccagaa cagattcaaa agtggcgcgc aatcaatgcg gatctcagag cagagcagca
     1321 agctgccaac cagcacttgc gacaggcccg acgagctctt gccgacgcga tcgaatcccc
     1381 aacttcaaat gaagatttaa tcaagcagcg cgctagagaa gtgtcggagg cgcaagccgc
     1441 cacgactcaa ctacaggcgc tgaaggaagc ccgcattctc caagtgctca cgcccgagca
     1501 gcgcgttaag ttaagagaga tacgtgaacg cgtccgggtc gccaatcagc aacagcgcaa
     1561 cggattgggc cgacgccaga acggtcgcaa caacaacgca aatgcgccgc tgagaccaaa
     1621 tcagcgaaag ctgatgcgac aacaaccaaa gcgctgacgt tgcaatcaat atcggaattt
     1681 cctgagccgg cctgggccaa ccccgggccg gcttcttttt tctcacgatc aagtcagggt
     1741 tcgttgagtt aaaccttgac gcacgacgcc gcttttgcgc atcataggcc gctctgcaaa
     1801 aatccaactc gcgccgcgct gccgcggaat ccgagtgact ttcttttctc gctgagtctc
     1861 gcatgaacat cgtcacgcgt cttctgctgg aactgcaaga aatgtctttg ctggcggcgc
     1921 gcgccgcgcg tggcctgttc aagaagcccc actatgttcc cgaaaccatc acgcagatgg
     1981 acagcatcgg cgttggttcg ctgaccataa ttattctcac cggatttttc acgggcggcg
     2041 tactgacgct gcaaacgtat cagacgctcg catcgtatgg agcggtcgat cagatcggct
     2101 atctgattgc tatttcactg gttcgagagc ttggcccggt gcttactgcg ttgatggtca
     2161 ccggccgagt agtgtccgca atctcggccg agttgggttc gatggtagtt tcggaacaga
     2221 tcgacgcgat gcgcgcgctt ggaactgatc cggtgcgcaa gcttgtggcg ccacgcattc
     2281 tggctctaat aatcacactg ccgttgttga cgttgattgc cgacgtggta ggtattgttg
     2341 gtggctggac cgtatcgaca tggctctacg gtttgccatc cgccatgttt acgacttcag
     2401 tgcgcgatgg cattacgacc gatgacatcg tcggcggaat tgttaagccg ctggtcttcg
     2461 ctttcttgat gggaacgatt gcctgtcaca aaggtctgaa aaccgaaggc ggcacggtcg
     2521 gcgtgggccg ctcgacgact acggcggtgg tgacggcttc gattatcgta atcgttgccg
     2581 acttcttcct tgcgcaggcc cttcaggtta ttctaggcac gacaaagtga tgatgtctca
     2641 agcttcaatc gatcggccgt caacgcaggc gccggacaat cgcgtcagcg acaacgccgc
     2701 cgaatctact tttcgcgaag tggacgactc tcatcgcgcg attccggcga tcgagttccg
     2761 cgacgtgacg atgattttcg atgaccgcaa agtgcttgac aatctcagct ttaaagtaat
     2821 gaagggtgag acgaaaatca ttctcggcgg ttcgggctgc ggcaaatcaa cgacgatcaa
     2881 gttggtgctg ggcctgctca agcccgatag cggccagata ctcgtcgatg gcgaagacgt
     2941 cactaattat tcagaagttg acatgatgcg cgtacgaaaa aagattggca tgatctttca
     3001 ggaaggcgcg ttgttc
//
LOCUS       DASZZE010000407         3262 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_255536, whole genome shotgun sequence.
ACCESSION   DASZZE010000407 DASZZE010000000
VERSION     DASZZE010000407.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3262)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3262)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3262
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_255536"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..255)
                     /locus_tag="VHD88_07845"
     CDS             complement(<1..255)
                     /locus_tag="VHD88_07845"
                     /inference="COORDINATES: protein motif:HMM:NF014225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21746.1"
                     /translation="MTEDNKEGLVKIRRALISVSDKTGIVEFARKLKGFGVEIISTGG
                     TAKTLRDAGLEVRDVSDVTGFPEMMDGRIKTLHPKIHGALL"
     gene            complement(259..1257)
                     /locus_tag="VHD88_07850"
     CDS             complement(259..1257)
                     /locus_tag="VHD88_07850"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HVS21747.1"
                     /translation="MIPHRPHTKRGPQFPLRLITTISLVVLSIANLFIKERAQEPEDV
                     IRVRTDLVAVPVAITDAQGRRILGLKTDDFVLSDDGSNARIDYFASGVERVALAFLLD
                     NSGSLREQLARQRDAALALFARFGPASTVTVIRFGQQAKVITPFTGESEKARVAFDAP
                     GPLSERTAIFDAASTTVELFRSRGENSAERHIGILISDGLDTASKATSSQVIEAANRA
                     NVSFFVIQLPLFTPREGRLVPRPAAKGFRDLAEKTGGRYFVAGNAHTALNPDAAIDLA
                     PVFAAIEEGLRSQYVLGFYPRETSRDGQMHRVTIGLANRNSRLRVHQVKTTYRLNK"
     gene            1520..2251
                     /locus_tag="VHD88_07855"
     CDS             1520..2251
                     /locus_tag="VHD88_07855"
                     /inference="COORDINATES: protein motif:HMM:NF014582.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HVS21748.1"
                     /translation="MIAILFTSLAACSTLFGGFVAVAARRRIHLLMGIGAGVLLGAVF
                     FDLLPESLLVAQEHGWSVRLVLGIVIVGFLLFYMTERLLVLHACPEEDCTNEVHQRLG
                     RMSAIGLIAHSTLDGAAIGAATLMNWRTGLLVALAVVVHDVSDGLNTIMLVTHGEKAR
                     RGDIVFLVVDALAPIAGALLALLILPPPLALVTFLAFASGFFLYTATSDLLPEAHRRS
                     PSIAVALATVLGIVIIGAAVRLIGS"
     gene            complement(2338..>3262)
                     /locus_tag="VHD88_07860"
     CDS             complement(2338..>3262)
                     /locus_tag="VHD88_07860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21749.1"
                     /translation="RNFETPYNENLILSSTTGAGGLANGVLGDTSNLPLLPGIRTQYN
                     VGFQQALGKLIIIDGDYFNKRTNNAYDFNVLFNTSVTLPISWQMSKLDGVSLRVNLTN
                     YKGLSAFMTAGHTRARFSPPESGGLFFNSNLPAGVFRIDHDQNLEQTTQAQYQFEHWK
                     KLLPYVNFTWRYDSGLVAGSVPDFATALGFTADQQAQIGLFCGSTFATPTHPILACAS
                     ANRGALRVRIPADGAENDDTNPPRIAPRNLFDFSVGTDNLLRGEHTKVTLRFTGINIT
                     NKITLYNFLSTFSGTHFVSPRAFQVQAGVTF"
BASE COUNT          685 a          855 c          974 g          748 t
ORIGIN      
        1 gagcaaggcg ccgtggattt tcggatgaag ggtcttgatg cggccgtcca tcatttccgg
       61 aaagccggtc acgtccgaaa cgtcgcgcac ttctagacca gcatcacgca gagtcttcgc
      121 cgtgccgcca gtgctgatga tttcgacgcc gaagcctttc agtttgcggg cgaattccac
      181 gatgcccgtc ttgtccgaga cgctgatgag cgcgcggcga atctttacca agccctcttt
      241 gttatcttcc gtcattgctc acttgttcag tctgtaagtt gtcttcactt gatgaacgcg
      301 aagtctgcta tttcgatttg cgaggccgat tgtaacgcga tgcatttgac cgtcgcgcga
      361 agtctcgcga ggataaaagc ccagcacgta ttggctgcgc aagccttctt cgatcgccgc
      421 aaacactgga gccaaatcga tcgcggcgtc aggattcaac gcagtatgcg cattgccggc
      481 aacaaaataa cggccaccgg ttttctcggc caaatcgcga aaacccttcg cagcggggcg
      541 gggaacgagg cgcccttcgc gcggcgtgaa cagcggcagt tgaatcacaa agaaagaaac
      601 gttggcgcga ttcgcagctt caatcacttg cgatgaagtg gctttgctcg cagtgtcgag
      661 gccgtcgctg atcagaattc cgatgtgccg ttcggcagaa ttttcgccgc gtgaacgaaa
      721 aagctcgact gtagttgatg cggcatcgaa gatcgccgtt cgctcgctca atgggcccgg
      781 cgcgtcgaac gccacgcgcg ccttttcgct ttcgccggta aacggtgtga tgactttggc
      841 ttgttgtccg aaacgaataa ccgtcacggt tgacgcggga ccaaatcgcg caaacaaggc
      901 gagcgccgca tcgcgctgtc gcgcaagctg ttcgcgcaag ctgcctgagt tgtccagcag
      961 gaaggctaga gcgactcgtt cgacgccgga cgcgaagtaa tcgatgcgcg cgttgctgcc
     1021 gtcgtcactc aaaacaaagt cgtctgtctt caaacccaaa attcgccgtc cctgcgcgtc
     1081 tgtaattgcc actggaactg cgacgagatc ggtgcggact cgaatgacgt cttcgggttc
     1141 ctgcgctctc tctttgatga acaagttcgc gattgagaga acaacaaggc taatcgtggt
     1201 aatcagacgg agagggaatt gcgggccgcg ttttgtgtgc gggcggtgcg ggatcatttt
     1261 gctgatcggg ctaaaacaga aagcgcccga agagcagaat gctgaggatt atcaggacag
     1321 agatgacgat gatcttaacg agactcacgg tcggttcctc agtgaaagaa aacgctaact
     1381 taaggcgcaa ttctagtcag gccggagcac gctgtcaata gttcagcggc caaagaccgt
     1441 gaatacgcta gtgcgcgcgg cgccaaggtt ttcgatcaag gggtttctct gctattttcc
     1501 tagattcagg ggacgttcaa tgattgctat cttgttcaca tcgctggcgg cgtgttcgac
     1561 tctgtttggc ggtttcgtcg cggttgccgc caggcgccgg attcatctgt tgatggggat
     1621 cggcgcgggc gtgcttttgg gcgcggtgtt tttcgaccta ctaccggaat cattattagt
     1681 agcccaggaa cacggatgga gcgtgcgact cgtactcgga attgtgattg tcggatttct
     1741 cctcttttac atgaccgagc gtctgttagt gctgcatgcc tgtccggaag aggactgcac
     1801 aaatgaggtt catcaacgtc tgggccggat gagcgcgatt ggtttgatag ctcacagcac
     1861 gctcgacgga gccgcaattg gcgccgcgac tttgatgaac tggcgcacgg ggcttttggt
     1921 ggcgctggcc gtcgtggttc acgacgtcag cgacggtctg aacaccatca tgcttgttac
     1981 gcatggtgaa aaggcgcgcc gcggagacat agtgtttctg gtagtcgatg ctttggcgcc
     2041 gatcgcggga gcgctgcttg ctctgctcat cttgccgccg cctctcgcgc tggttacatt
     2101 tctggcgttc gcttccggat tcttcctcta cactgcaacc agcgatttat tgcctgaagc
     2161 acatcgtcgc tcaccaagca tcgccgtagc tttagccacc gttcttggca tagtgatcat
     2221 cggcgccgcc gtgcgattga ttggaagctg aataaaagag cgcccaagtg aaaaccgccg
     2281 cgcccaatgt tcatgagcgc ggcggtcttc gtcatcatca gaggtgacgg ggcgaatcta
     2341 gaacgtcact cccgcctgca cctggaacgc ccgcggcgaa acgaaatgcg tgccgctaaa
     2401 cgtcgaaaga aagttgtaca gcgtgatctt gtttgtgatg ttaattccag tgaatcgcag
     2461 cgtgactttg gtatgctcgc cgcggagcag gttatccgtg ccgacactga aatcgaatag
     2521 attgcgaggt gcgatgcggg gcggattcgt gtcgtcgttc tcggcaccat cagccggaat
     2581 acgcacacgc aaagcgccgc gattcgccga agcacatgca agaatcggat gcgttggcgt
     2641 ggcgaaggtg cttccgcaga acagtccgat ctgtgcctgc tggtccgcgg taaagcccag
     2701 tgcggtggca aagtcaggca cgctgccagc aaccaaaccg ctgtcgtaac gccaggtaaa
     2761 attaacgtac ggcagaagtt tcttccagtg ctcgaactga tattgcgctt gcgtcgtttg
     2821 ttcaaggttc tgatcgtggt cgatgcggaa gacgccggca ggcaagttgg aattgaagaa
     2881 caggccgccg ctctcaggcg gagagaagcg cgcgcgggtg tgcccagcgg tcatgaaagc
     2941 agacagccct ttgtagttgg ttaggttgac gcgcagtgag acgccatcga gctttgacat
     3001 ctgccacgag atcggaagcg taacggatgt gttgaagagc acgttgaagt cgtaagcatt
     3061 gttggtgcgt ttgttgaagt agtcgccatc gatgatgatg agcttgccga gcgcctgctg
     3121 aaagccaacg ttgtattgag tgcgaattcc gggcagcaac ggcagattgc tcgtatcgcc
     3181 gaggacgccg ttcgctaaac cgcccgcgcc ggtggtgctg gataggatca ggttttcgtt
     3241 gtacggcgtc tcgaagttgc gc
//
LOCUS       DASZZE010000408         1665 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_255632, whole genome shotgun sequence.
ACCESSION   DASZZE010000408 DASZZE010000000
VERSION     DASZZE010000408.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1665)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1665)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1665
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_255632"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..270)
                     /locus_tag="VHD88_07865"
     CDS             complement(<1..270)
                     /locus_tag="VHD88_07865"
                     /inference="COORDINATES: protein motif:HMM:NF027404.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21750.1"
                     /translation="MAQQQSNTELSEIIAENFGANATYVEALLARFRSDPALVDESWR
                     AYFAELFGDGALSESPTAGTVTQPQADGGGTTVTSPHDGNKAVAAK"
     gene            481..1044
                     /locus_tag="VHD88_07870"
     CDS             481..1044
                     /locus_tag="VHD88_07870"
                     /EC_number="5.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012521.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate mutase family protein"
                     /protein_id="HVS21751.1"
                     /translation="MADEVSERRAGLKTALVFAMLFAVLGAVVVFAYFATFSRPVTTV
                     ILIRHAEKIVDPNNPDVDLSPAGQARAQEIVRMFSDAGINAIYATQYKRTQETVKPLA
                     DRLALPVSIVDSKKTPDLIKQLLSDHRGQTILLAGHNSTVPEIIAALGGPQYPIIPET
                     EYDNLYIVTVYRTGKAKVVKMKYGAPN"
     gene            1304..>1665
                     /locus_tag="VHD88_07875"
     CDS             1304..>1665
                     /locus_tag="VHD88_07875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HVS21752.1"
                     /translation="MKKSERKSPNKSGIDRRTFVKLLPAAGAAGLAVSGLPLKAAAQT
                     PTPSPLPTPRPSPTPAPRITQEMMHNAEKLIGIELTDKQEGMALPGVNRALDSYEAVR
                     KIDVPLDTEPAIAFHPALP"
BASE COUNT          379 a          463 c          453 g          370 t
ORIGIN      
        1 cttcgccgca acagctttgt ttccatcgtg tggagacgtg accgtcgttc cgccaccgtc
       61 agcctgaggc tgagtcaccg tgcctgctgt tggagattct gacagcgcac cgtcaccaaa
      121 cagttccgcg aagtatgctc gccacgattc gtcaaccagc gcgggatcgc tgcgaaacct
      181 ggcgagcagc gcctcgacat acgttgcgtt cgcgccaaag ttctcggcga tgatttcaga
      241 aagttctgtg ttgctttgtt gctgggccaa gacgttatct cgtgcgggtg aaaagcagcg
      301 cttgatgtcg cttgcttttc gatcaatttc cgcttgcagt tctttacacg atagattagc
      361 accttccgct cttgattgca tccggcggaa atgaaaagaa tttgctcgaa ataacgaccg
      421 ccagtgatat tgtattcggc cattcgagcc ggagtagttc gcggagaatc gagattcaat
      481 atggctgacg aagtgtcgga gcgacgcgcc gggctaaaga ctgcgctggt ttttgcgatg
      541 ctgttcgccg tgctcggcgc ggtggtcgtc tttgcttact tcgcgacgtt ctctcgtccc
      601 gtcacaactg tgattctgat tcgccatgcc gagaagattg tcgatccaaa caatccggac
      661 gttgatctca gcccggccgg acaggcgcgc gcgcaggaga tcgtccgcat gttcagcgac
      721 gcgggaatca acgcgattta cgcgacgcaa tacaaacgca ctcaggagac tgtgaagcct
      781 ttggccgatc gtctggctct gccggtgagc atagtcgatt caaagaagac gccggacctg
      841 atcaagcagc ttctttcgga tcatcgaggt cagacaatcc tgctcgcggg tcacaacagc
      901 accgtgccgg agatcatcgc agcgctgggc gggccacaat acccgatcat tcctgagacg
      961 gaatacgaca atctttacat cgtgaccgtt taccgaactg gcaaagcaaa agtagtgaag
     1021 atgaagtacg gcgctccaaa ctgaagtatt aggctttcgt gaattcagtc ctacctgggt
     1081 tcagattagc tccgtaggag cgcaatgttt atagcttagc ggaaattcta atttgttctc
     1141 agctctgtag gagcgaaata ttcgcgaggg ttcggctgac atttcgctcc tacggagctt
     1201 acaaagctct aatgcgcaac ggtctataaa catctcgtcc ctacgggact gttctgagag
     1261 taggtccagt agcgcttact gatgaaacca acatgaggaa cctatgaaaa aatccgaacg
     1321 caagagtcca aacaaatccg gcatcgaccg ccgcaccttc gtcaaacttc tgccggcagc
     1381 cggcgcggca ggtctcgcag tgtcagggct gccgttgaaa gctgcagctc agacgccaac
     1441 tccgtcaccg ctgccgacgc cgcgaccttc gccgacgcca gcgccgcgca tcactcaaga
     1501 gatgatgcac aacgcagaga agctcatcgg catcgagtta actgacaagc aggaaggaat
     1561 ggcgctgccc ggcgtcaacc gcgcgctgga cagttacgag gctgtgcgca agatcgacgt
     1621 gccgcttgat actgagccgg cgatcgcatt tcatccggcg ttgcc
//
LOCUS       DASZZE010000409         7122 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_210553, whole genome shotgun sequence.
ACCESSION   DASZZE010000409 DASZZE010000000
VERSION     DASZZE010000409.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7122)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7122
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_210553"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..502
                     /locus_tag="VHD88_07880"
     CDS             <1..502
                     /locus_tag="VHD88_07880"
                     /inference="COORDINATES: protein motif:HMM:NF025637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HVS21753.1"
                     /translation="NVCTERRAVVMIFKGVARMEEHNGHMLHSQKVTLHAPAVIRLTE
                     YRHIPYERRSLSRKNILLRDHSCCQYCGKQFAPSELTLDHIVPRSRGGESAWDNLVAC
                     CKRCNHRKGNRTPEESAMHLVRRPRAFSLHVNRQIMRYLGRADEKWRKYLFYESDGGS
                     DLCVRA"
     gene            533..817
                     /locus_tag="VHD88_07885"
     CDS             533..817
                     /locus_tag="VHD88_07885"
                     /inference="COORDINATES: protein motif:HMM:NF014470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HVS21754.1"
                     /translation="MNVLLFAFESPYIIILVVAAIFLLFGGSKLPQLAKALGQSKKAF
                     KEGMDDAEQDDKAKSDSRAKLDSVDDEALFEEARRRAQQMRADETKKIER"
     gene            complement(1006..1743)
                     /locus_tag="VHD88_07890"
     CDS             complement(1006..1743)
                     /locus_tag="VHD88_07890"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HVS21755.1"
                     /translation="MDKHVELPKEGRALYVAAGTGGHALALQERAGEKLRLLCVDESD
                     ECLELARAKATALHEQTEFQRADSNALSFPGDQFDLVLGDTSLTRLGDVKRTLAKMVR
                     VAMPGATVAWWLPTYSSFGEFFSIYWEVLLNAQLEDHGVDVESLITELPTTSDAETLA
                     EHAGLENVKSWTTIEEFDYDSGEKFFNSPLITDFLLTNWLHAVPEAARERVMQELKRI
                     IDEERHEGAFALTLKATLVVGTKSRAQ"
     gene            complement(2071..3435)
                     /locus_tag="VHD88_07895"
     CDS             complement(2071..3435)
                     /locus_tag="VHD88_07895"
                     /inference="COORDINATES: protein motif:HMM:NF023428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HVS21756.1"
                     /translation="MPNRSATTLFPSMSEVDGATVGSATPAPLADRMRPCTLDEFVGQ
                     DHLVGEGRVLRRLIEGGGTLPSLILWGPPGTGKTTLGRLLAEKTDARFVALSAVFSGV
                     KDLRAAIAEARLDRQRNRRTILFIDEIHRFNKAQQDALLPAVENGTVTLIGATTENPS
                     FEVTSALLSRSRVLVLNPLSEDEVQTIVRRALTDEERGLASLHPDIFDELIARLAHSS
                     GGDARVALAALEATVESTEPDEGGKRVITAETLIEALGRAQFAYDKGGEEHYNLASAL
                     IKSLRNSDVNAALYWLARMIEGGADPIFIVRRLCILASEDIGLADPQAMVQAAAAAEI
                     TQLIGLPEALFPLTQATIYLARAPKSNAVLRAYSAAHKDAVDIGLEPVPLHLRNAVTP
                     LMKHLGYGKEYRYVHSDRAAQEEMSCLPEKLNGRVYYEDEHTPESNKQGRGGLPAPKA
                     RGRK"
     gene            3728..4795
                     /locus_tag="VHD88_07900"
     CDS             3728..4795
                     /locus_tag="VHD88_07900"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HVS21757.1"
                     /translation="MRLSSNENPYGPSPMALKAMSDAFNLAWRYPDEHADALIETLAK
                     INGVGRDQILLGDGSGEILKLCAAAFTGPVSTSTSNVRGAALATPTRGGALSAFTPGR
                     GKMIVADPTFEAILNHARVNAAEVVKVPLTSSFSHDLPKMLSAANEGLAYICNPNNPT
                     ASITPKNEMREFIAKAPRETMILVDEAYYHYADSPDYESVIPLIKDHPTLIVARTFSK
                     IFGMAGLRCGYCVAQRETIQRLRPHQTWDSVNIMALAAAIASLDDPDQVANGQRLNRE
                     TKMFVTRELDAMGFKQIPSQANFIMIHMKRPVRPMIEGLKQRGVQVGRVFPALPNHMR
                     VTVGKKAEMETFLSAFRQVVA"
     gene            4841..5665
                     /locus_tag="VHD88_07905"
     CDS             4841..5665
                     /locus_tag="VHD88_07905"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HVS21758.1"
                     /translation="MISAQTARRAVWRPLWQLPGRFDLVVSLTKRELAARYKGSVLGI
                     VWAVLTPIVMIAIFTFIFAGIFKAKFGVSSSQWDYALYLFCGLLPWNAFQESLQLSSS
                     TIVSHANLVKRVVFPLETLPVAQTLAAAANQMFGTAALLVATLLLRRELHVTTLFLPL
                     LVIPQLIATLGAAWLLASLGVFVRDIVQGITLVLMAWMYLTPIIYPESIVPERYRAIV
                     NLNPFTPLVRNYRRIILDGQMPDWPGLAYFTAFAVFSFLFGYWWFARTRKNFADVI"
     gene            5932..>7122
                     /locus_tag="VHD88_07910"
     CDS             5932..>7122
                     /locus_tag="VHD88_07910"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HVS21759.1"
                     /translation="MAFDKVKTLRAAEKYLEQGKIPAAIREYTLVVQNEAEDFATLNT
                     LGDLYVRIGNQPAAISCFHRIAGHYREQDFGLKAIAMYKKIDRLQPHDTEIATHLADL
                     YAQQDLVVEARAHYLAVAEAHNRSGATHEALEVLRKIADLDPQNTEIRTRLAEGYLKE
                     GMTAEAAASFAEAGQRLLARGASDNALEVFGKALAIRPSDHASLKGLLAAHTARGTAD
                     EAAEAIERASTNNPDDIELLSILGRAYIEADDPTQAERVTASFVAKESSAYLRYVDVA
                     RLYLSNDKVEDAVRVVALITEQMLAEREESQLLDLVNELLTCDSDNVQALRLLVRAHW
                     WQRDMEKLTAALERLAEAAEAAGLEKDERYALTQLTRLMPDQAHHLERLSKFGGAEEE
                     AEIEG"
BASE COUNT         1489 a         2021 c         2046 g         1566 t
ORIGIN      
        1 caacgtgtgc actgagcggc gcgcggtggt gatgatcttt aaaggcgtgg cgcgcatgga
       61 agagcacaac gggcacatgc tgcattcgca aaaggtcacg ctgcacgcgc cagcggtgat
      121 cagactgact gagtaccggc acattccgta cgagcggcgt tcgctttcac gcaagaacat
      181 tctgttgcgc gatcactctt gctgccagta ttgcggcaag cagttcgcgc cgtctgagtt
      241 gacgctcgat catatcgtgc cgcgttcgcg tggcggagag tcggcgtggg acaatctggt
      301 tgcttgctgc aagcgttgca accatcgcaa aggcaatcgc acgccggaag aatcggcgat
      361 gcatctggtg cggcggccgc gcgcattttc gctccacgtc aaccggcaga taatgcgcta
      421 tctcggccgc gcggatgaga agtggcgcaa gtatctcttt tacgaatccg acggcggcag
      481 tgatctgtgc gtccgcgcgt gaagctaacc tgaagcccga aggagaatcg tcatgaacgt
      541 cctgctgttc gcatttgaga gcccgtacat cataattctg gtcgtcgcgg cgatcttcct
      601 gctcttcggt ggtagtaagc tgccacagct tgccaaagcg ctgggccaga gcaagaaggc
      661 cttcaaagaa ggcatggacg acgccgaaca ggacgacaaa gcgaagtcag attcgcgcgc
      721 gaagcttgac tcggttgacg acgaggcgtt gtttgaagaa gcgcgccgcc gtgcgcagca
      781 aatgcgcgct gacgaaacta agaagatcga gcgctgatca acagagacga ttttaagagc
      841 gccataggcg cgaaatactt atagacaagg ggtccgatcc actaactcca cgcgagcgcg
      901 aaagccatgg ctttcgcgct cgcgttgtct tatttaggca gcgcggttct ataaatatgc
      961 cgcgcttaac ggcgctcttg cgcaaatggc ggcgggtctt taacgtcact gcgctcggct
     1021 cttcgttccc accacgagcg tcgctttcaa cgtcaacgcg aacgctcctt cgtgccgctc
     1081 ttcatcgatg attcgcttta gttcttgcat aacccgctcg cgcgcggctt cgggcaccgc
     1141 atgaagccag ttggttaata gaaagtccgt aatcagcggt gagttgaaga acttctcgcc
     1201 tgagtcgtaa tcgaattctt cgatcgtcgt ccacgatttt acgttttcca ggccggcgtg
     1261 ttccgcaagt gtttccgcgt cagaggtcgt cggcagttcg gtaatcaaac tctcgacgtc
     1321 aacgccgtga tcttccaatt gcgcgttcag tagaacctcc caatagatcg aaaagaattc
     1381 gccgaagctc gaataggtcg gcagccacca cgccaccgtc gcaccgggca tcgccacacg
     1441 aaccatcttt gcaagcgttc gtttcacatc gccaagtcgc gtcaacgacg tgtcacccag
     1501 caccaaatca aactgatcgc cgggaaacga aagcgcgttc gagtcggccc gctgaaactc
     1561 cgtctgttcg tgcagcgccg tggcctttgc gcgtgccaac tccagacatt cgtcgctttc
     1621 gtcgacgcat agcaatctca acttctcgcc ggcgcgctcc tgcaaagcca acgcgtgccc
     1681 accggtgccg gctgcgacgt agagcgcacg gccctctttc ggcaactcga catgcttgtc
     1741 caccaattcg gcgaagcgcc cgccccaatc gggggcgaca tagaggtcgc ggaggaaggc
     1801 gagtcatttt cgtgacttat tggtgagcat cagtaagcaa ttcagtaatc cgtcctagtc
     1861 tgagagcgac cagtcaacca actcgcgaag cgagcggcag agtagtagcc ccgggcgtaa
     1921 gcccggggtt aagagtgaag aaaactactt gagccccgta aggggcgaca gaaatttcgt
     1981 gttgtccgcg gcgcaaagat ctcatttctg tcgcccgctt cgcggctctt ctgttcttgt
     2041 ggttggctga tccccgggct tacgccgggg ctactttctg ccgcgcgcct tcggcgctgg
     2101 taaaccgccg cgtccttgct tattgctttc tggagtgtgt tcatcctcgt aataaactct
     2161 cccgttcaac ttctctggca aacacgacat ttcttcttgc gccgcccggt cgctgtggac
     2221 gtagcgatat tcttttccgt atccgagatg cttcatcagc ggcgtcaccg cgttacgaag
     2281 atgcagcggc acaggctcga gtccgatatc aaccgcgtct ttgtgagccg ctgaataagc
     2341 gcgcagcacg gcgttcgatt tcggcgcgcg ggcgagatag atcgttgctt gagtcagcgg
     2401 gaacagcgct tcgggcaagc cgatcagttg tgtgatttca gcggccgctg ctgcctgaac
     2461 catcgcttgc ggatcggcga ggccgatgtc ttcggaggca agaatgcaaa gacgccgtac
     2521 gatgaagatc ggatcggcgc cgccttcgat cattcgcgcc agccagtaca acgccgcatt
     2581 cacgtctgaa ttgcgcagcg atttgatcag cgcggaagcg aggttgtaat gctcttcgcc
     2641 gcctttgtcg taagcgaact gcgcccgacc caaagcttcg atgagcgtct cagccgtaat
     2701 cacccgctta ccgccttcat ctggttctgt tgattcgacc gtcgcttcga gggccgcgag
     2761 cgcgacccgc gcatcaccac cggatgagtg cgccagccgc gcaatcagtt catcaaaaat
     2821 atcgggatga agacttgcga gtccgcgttc ctcatcagtc aacgcgcgac gcacaatcgt
     2881 ttgcacttca tcctcgctga gcggattcag caccagtacg cgagagcgtg agagcagcgc
     2941 actcgtaact tcgaacgaag gattttcagt ggtcgcgccg atcagcgtga cggtcccgtt
     3001 ttcaactgcg ggcaaaagcg catcttgctg agctttgttg aagcgatgaa tctcgtcgat
     3061 gaagagaatc gtgcggcgat ttcgttgccg gtcaagccgg gcttcggcga ttgcggcgcg
     3121 caagtctttc acaccagaga aaactgccga caacgcgaca aatcgcgcgt ccgttttctc
     3181 ggcgagaagt cgtcccagcg tggtcttgcc cgttcccggc gggccccaca aaatcaatga
     3241 cggcagagtt cctcctcctt cgatcaggcg ccgcagcacg cgtccttcac ctaccagatg
     3301 gtcctgtccg acgaattcgt ccagcgtgca cggtcgcatg cgatcggcga gcggcgccgg
     3361 cgttgctgag ccgacagtcg cgccatcgac ttccgacatt gacgggaaca aagttgtcgc
     3421 gcttcgattt ggcattcgtt ttcgatcagc gtatcacaac ccgaaagtcc taggcatcct
     3481 tgatcatgtg gaagagcggt ttggccgcgc ggggttgatg gcggataatg aagcgaacca
     3541 actcagtttg tggaggtcaa agaaaatgcc aaagaccgca gttagttttt ctcgtcgcag
     3601 gtttgcgcaa ttgtttggcg cgggcgccgc atgcgtcgtc gccagaccgg cgatttcatt
     3661 cgcggagcct ttgctgtctg gtcaccgtgc gctgtttcct tcgcgatcct caatgtaggc
     3721 gggcgttgtg cgtttgagtt cgaacgagaa tccttacggc ccttcaccga tggcgctaaa
     3781 ggccatgagc gacgctttca acctcgcgtg gcgctatccc gacgagcacg ccgacgcttt
     3841 gatcgagacg ctggcgaaga tcaatggcgt cggccgcgat cagattctgc tcggcgacgg
     3901 ttcaggtgag attctgaaac tctgcgcggc ggcattcacc gggcctgtct caacttcgac
     3961 gagcaacgtc cgtggagcgg cattggcgac accgacgcgt ggaggcgcgt tgtctgcatt
     4021 tacgccgggc cgtggcaaaa tgattgttgc cgatccgacc tttgaagcga ttctcaatca
     4081 cgcgcgcgtc aacgccgcgg aggttgtgaa agtgccactc accagcagct tcagtcacga
     4141 tttgccgaag atgttgtccg cggcgaatga aggtttggct tacatctgca atccgaacaa
     4201 tccaacggcg agcatcactc cgaaaaacga aatgcgcgag ttcatcgcca aagccccgcg
     4261 cgagacgatg attcttgtcg atgaggctta ttatcattac gccgacagtc ccgactacga
     4321 aagcgtgata ccactaatca aggatcatcc gactctgatc gtcgcgcgga ctttctcgaa
     4381 gatttttggc atggccggat tgcgctgtgg ttattgcgtg gctcagcgtg aaacgattca
     4441 gcgtctgcgt ccgcatcaaa cgtgggacag cgtgaacatc atggcgctgg cggcggcgat
     4501 cgcaagtctg gacgaccccg atcaagttgc caacggccaa cggctgaatc gtgaaacgaa
     4561 aatgtttgtg acgcgcgagc ttgatgcgat gggcttcaag caaattcctt cgcaggcaaa
     4621 cttcatcatg atccatatga agcggccagt gcgccccatg attgaagggt tgaaacaacg
     4681 aggcgttcaa gtcggccgtg tgtttcccgc gctgccgaac cacatgcgtg tgacagttgg
     4741 caagaaagca gagatggaaa cttttctgtc tgcgtttcgg caggttgtgg cgtaacgcaa
     4801 ctttagaatc cagttcgcga ccctctccag gctatcgagg atgatctccg cgcaaacagc
     4861 acgacgcgcc gtttggcgac ccttgtggca actgccaggc cgctttgatc tcgttgtctc
     4921 acttacgaag cgcgagttgg cggcgcgtta caaaggctct gtgctgggca tcgtctgggc
     4981 ggtgctgacg ccgatagtga tgatcgcgat cttcacgttc attttcgcgg gaatcttcaa
     5041 agcaaaattc ggcgtcagta gttcgcagtg ggattatgcg ctttatcttt tctgcggcct
     5101 gttgccctgg aatgcgtttc aggaatcgtt gcaactttca tcgagcacga tcgtatcgca
     5161 cgcgaacctg gttaagcgcg tagtgtttcc gctcgagact ttgccggtcg cgcagacgct
     5221 cgccgcggcg gcgaatcaga tgtttggtac ggccgcgctg ctggtggcca cgctcctcct
     5281 ccgtcgcgag ctgcatgtga cgacgttgtt cctgccgctg ctagtcatcc cgcaattgat
     5341 cgctacgctg ggcgccgcat ggctgctggc ttcgctcgga gtttttgttc gcgatatcgt
     5401 gcagggcatc acgctggtgt tgatggcctg gatgtatctg acgccgatca tctatccgga
     5461 atcgattgtg cccgaacgct atcgtgcgat cgtcaacctc aatccattca cgccgctggt
     5521 ccgcaactat cgccgcatca tcctcgacgg ccagatgccg gattggccgg gcctggcata
     5581 cttcaccgct ttcgccgtgt tcagctttct gtttggctac tggtggtttg cgcgaacacg
     5641 gaagaacttc gctgatgtca tctagttagc accttcttat ccgaatgttg gcaatagttt
     5701 cttattgaaa aacaacgttg acactgactc tttcagcatg ttagcttaaa ggcaccgcct
     5761 ggctccaagg cggctttggt aaaaactaag ctcggggtct cctacgacgg cgtttgccgc
     5821 gccgcacacc gcgcaagtcc ctcactaggc tatcagcgaa cggcaatcag ctaacagcac
     5881 tcatcggcga ttcgctgaac aggtttccag tctctaagag tttcgaacaa aatggctttc
     5941 gacaaggtaa agactctgcg cgcggctgag aagtacctcg aacagggaaa gatcccagcg
     6001 gcgatcagag agtacacgct ggtggttcag aatgaggccg aggacttcgc cactctgaac
     6061 acgctgggcg atctctacgt tcgcataggg aatcagccgg cggcgatttc ttgtttccat
     6121 cgtattgccg ggcattatcg cgaacaggat tttggtctga aggcgatcgc gatgtacaag
     6181 aagatcgatc gccttcaacc gcatgatacg gaaattgcga ctcacctcgc cgacctctac
     6241 gcccaacagg atctggttgt cgaagcgcgc gcgcattatc tggcggtagc ggaggcgcac
     6301 aaccgctcgg gcgcgacgca cgaggcgctg gaagtcttgc gcaagatcgc tgacctcgat
     6361 ccgcagaaca ctgagattcg cactcgtctc gctgaaggct atctcaagga gggaatgaca
     6421 gcagaggcag cagcttcctt tgcggaagcg ggccagcgtc tgttggcgcg cggcgcgtca
     6481 gacaacgcac tggaagtttt cggtaaagct ctggcaatcc gcccgagtga tcatgcgtcg
     6541 ctgaaaggat tactggctgc gcacaccgcg cgcggaaccg ccgacgaggc cgcggaagcg
     6601 atcgagcgcg catcgacaaa caatcccgac gatattgaat tgctctcaat actcgggagg
     6661 gcctacatcg aagctgacga tccgacgcag gccgagcgcg tcaccgcttc gttcgttgcc
     6721 aaagaatcgt cggcgtatct acgttacgtc gatgtagcgc gcctgtatct gagcaacgac
     6781 aaagttgagg acgctgtgcg cgttgtcgct ctgataaccg agcagatgct ggccgagcgc
     6841 gaagagagtc agttgctcga cctggtgaac gagttattga cttgcgattc ggataacgtt
     6901 caggcgttgc gcctgttggt tcgcgcgcat tggtggcagc gcgacatgga aaaactgacg
     6961 gccgcgctgg agcgattggc agaagctgct gaagctgcgg gcctggagaa agatgaacgt
     7021 tacgcactca cccagttgac gcggctgatg cctgatcagg cgcatcatct cgagcgcctc
     7081 agcaaatttg gtggcgccga agaagaagct gagatcgaag ga
//
LOCUS       DASZZE010000410         6305 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_143485, whole genome shotgun sequence.
ACCESSION   DASZZE010000410 DASZZE010000000
VERSION     DASZZE010000410.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6305)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6305)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6305
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_143485"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..423)
                     /locus_tag="VHD88_07915"
     CDS             complement(<1..423)
                     /locus_tag="VHD88_07915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HVS21760.1"
                     /translation="MNSFFLRRSLLNRVRLFALVLPLALFGFAAAAAAQQPDERIITE
                     TSLVQLNVGVVDQQGHAITTLSRNDFVVYEDGVKRPIAAFEPTEAPFSLVLLLDSSGS
                     TINFRQQIRQAAIRFLDALSPDDRVSVIQFSGKGVKTLL"
     gene            592..1095
                     /locus_tag="VHD88_07920"
     CDS             592..1095
                     /locus_tag="VHD88_07920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21761.1"
                     /translation="MHRPNFCAECGARLARKGWRAWIGGRVCGNCARRVGKTSGAKLM
                     IAVVVLAVAAFALGRYLRPAPPPLIVERAANSPLSDLPVNLNDAAKSGSRNPKSQNEG
                     AQSSDDPATHQTSTTASSDDVVFICGARTKKGTPCHRRVHFAGERCYQHKGMPAILPL
                     EKLVVRP"
     gene            complement(1185..3374)
                     /locus_tag="VHD88_07925"
     CDS             complement(1185..3374)
                     /locus_tag="VHD88_07925"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HVS21762.1"
                     /translation="MSGEEELYLVPQDGSKPPQQITNGGSAMRYGPEWSADGKRIAFS
                     DKDGKIFVVTLADRKMIEIVDSPRGQIRDYVWSPSGNYLAYSMPTNSSGYSQIYVWSA
                     TDGQIHRVTSEMFNAVNPAWDPQGNYLYFISDHEFAPQISQTEFNFATNRMAYIYAMA
                     LRKDVKHPFPPESDEVAVSKPKEGEGQASAETKEPEQPKPDAKPAAPPQKTLVVDFDG
                     IMTRVARAPIGADNYGALSAKTGFLLYASGSAFYYGRQGDRPAQLKLFSIKDRKETTL
                     AEDIGGYTLSRDGSKVLVRSGPTYGLYDATPVGDKTRKPVSTAGLVVDRVPAQEWNQI
                     FNEVWRRYRDWFYVPNMHGYDWVALREQYKPLLQYVAHRSDLNYVISEMVSELSVQHA
                     YIEGGDFQIPPRPRVGLPGARFELDKQSGRYRISKTFQGQNDEDLYRSPLNEIGVNVN
                     VGDYVLAIDGEELKANDDPYRLLRNKADNPVQLTVNSKPTMDGSRTVSYRPITDEGNL
                     IYLDWVTRNRKKVEEAAGGRVGYIHIPDMGANGIREFIKWYYPQIRKEGLIVDVRANG
                     GGNVSRMLIERLRRKLLALGFSRTVEEATTYPDAVFIGPMVALLDGNSASDGDIFPAM
                     FRQAGLGPLIGKRSWGGVVGITNHGALIDGGTINVPEFGFANTNGEWIIEGHGVDPDI
                     DVDNDPKSEIAGRDPQLERGIAEIMAKIKDHPVKLPPRPPAPVKTIK"
     gene            complement(3371..4519)
                     /locus_tag="VHD88_07930"
     CDS             complement(3371..4519)
                     /locus_tag="VHD88_07930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21763.1"
                     /translation="MFKRNIFARFLGTATLVAFLMVAVSATFAQTRLLRFPDIHGDRV
                     AFTYGGDIWTAPATGGTAIRLTAHPGVEVFAKFSPDGNWIAFTGQYDGDEQVYIIPAT
                     GGVPKQLTFYPARGPLAPRWGWDNQVYGWSKDGKRVIFRSLRDSWTLPIARLYSVSVD
                     GGPAEPLPMPEAGSGDYSPDGAQMVYSPQFRDFRPEKRYGGGQANKLYTFDLKTYDTK
                     PITDGPRATRDPIWMGDTIYFNSDRDGHFNLYGYNVSSGKTSQITHSKQWDVRWPSSD
                     HDGRIVYEMDGELQVLDAKSGKATPISITVPDDGLARRPSRISVANNVESYDLSPKGE
                     RALFSARATSSPRRSRRDRPAISRILPAHTTSGQHGRPMDRRSPLSLT"
     gene            complement(4734..4973)
                     /locus_tag="VHD88_07935"
     CDS             complement(4734..4973)
                     /locus_tag="VHD88_07935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21764.1"
                     /translation="MSKSKIAAMVAIVSLGIFVAGCGTASNENANANMTKPANMAPAN
                     KAPSNANMPANMKMGNANMKPMASPKAMASPTKKP"
     gene            complement(5163..5444)
                     /locus_tag="VHD88_07940"
     CDS             complement(5163..5444)
                     /locus_tag="VHD88_07940"
                     /inference="COORDINATES: protein motif:HMM:NF003817.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative damage protection protein"
                     /protein_id="HVS21765.1"
                     /translation="MSDEMKCARCGQKRPPLGFAPLPTELGQKVATEVCQPCWSEWLQ
                     AQTRIINHYGLDLTNPEAQGFLMDNMKGFFYGSNDLAQIDTSKEGSIKW"
     gene            complement(5730..6203)
                     /locus_tag="VHD88_07945"
     CDS             complement(5730..6203)
                     /locus_tag="VHD88_07945"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HVS21766.1"
                     /translation="MSETATVREGMAAPEFTLQDSEDTQWRLSDHRGKVVVLLFYPGD
                     ETPICTRQMCAVRDRWEEYAATGAEVVGISANGVESHHSFAVHHNLPLRLLSDTGRRV
                     ADAYGARSLIPGKVARSVFVIDANGVIRYRDVRPVGLFRPNDDDIIRAIREAQKT"
BASE COUNT         1306 a         1758 c         1795 g         1446 t
ORIGIN      
        1 aagcagcgtt ttcacgcctt tgccactgaa ttgaataact gagacgcgat catcagggct
       61 gagcgcatcc agaaaacgta tcgctgcttg tcgtatctgc tgacgaaagt taatcgtcga
      121 tcctgacgag tccaacagta aaaccagact gaagggcgct tcggtcggtt cgaaagccgc
      181 gatcggtcgc ttcacgccgt cttcgtaaac tacgaagtcg ttccgggata gagtagtaat
      241 ggcgtggccc tgctgatcga cgacgccgac attaagttga acgagagacg tctcggtaat
      301 gatcctttcg tcgggttgtt gcgccgcggc agcggctgca aatccaaata aggcgagcgg
      361 caaaactaaa gcgaacaatc gaactcgatt gagaagtgaa cgacggagaa aaaatgaatt
      421 catcgtgcca aagttattaa gttggtgttt gctggggtag tcagagtatg ccttttgctc
      481 tatgaagttt gcaaatggag ccgggccgat cgcgagcgcc gtgatgatct tgcgcatccg
      541 gcgcgttcga atataatcgc cgggcgaaaa attccgaggg agtctcccac gatgcatcgt
      601 ccaaactttt gtgctgaatg cggcgcgcgc ctggcgcgaa agggttggcg tgcgtggatt
      661 ggcgggcgcg tgtgcggtaa ctgtgcacga cgggttggca agacttcagg ggccaaactc
      721 atgatcgccg tcgttgtgct cgccgttgcg gccttcgccc tgggacggta tttgcgaccc
      781 gcgccgccgc ccctgatcgt tgaacgcgcg gccaattcac cgctgtctga tttgccggtg
      841 aatctgaatg atgccgcgaa gtcgggaagc cgaaatccaa agtcgcaaaa cgaaggcgcg
      901 caaagctcgg atgatcccgc gacgcaccaa acttcaacta ctgcgtccag tgatgacgtt
      961 gttttcatct gcggagcccg cacaaagaaa ggcacaccgt gccaccgtcg cgtgcacttt
     1021 gccggcgagc gctgctatca gcacaaaggc atgccggcga tcttgccttt ggaaaagttg
     1081 gtcgtgagac cttgacttgc tttacaaaat ggaaagcccg agtggatcac aattgattca
     1141 ctcgggcttt cgctttgacc acaccgactt tcaagtggcg ctgctcactt gatcgttttc
     1201 actggcgccg gaggtcgcgg cggcagcttc accggatgat ccttgatctt ggccatgatt
     1261 tccgcgatgc cgcgttcgag ttgtggatcg cgcccagcga tctctgattt gggatcgttg
     1321 tccacgtcga tgtcagggtc cacgccgtgg ccttcgatga tccattcgcc attcgtgttg
     1381 gcaaatccaa actcgggaac gttgatcgtg ccgccgtcga tcagcgcgcc gtgattagtg
     1441 atgccaacga cgccgcccca cgagcgtttg ccgatcaatg gaccgagccc ggcttggcgg
     1501 aacatggccg gaaagatgtc gccatccgat gcggagtttc cgtcaagcag ggcgaccatt
     1561 gggccaatga agacggcatc cggataagtt gtcgcctctt cgacggtgcg cgaaaatccc
     1621 agtgccagca gcttgcgccg cagccgctcg atcagcatcc gcgagacgtt gccgccgcca
     1681 ttcgcgcgca cgtcaactat caatccttct ttccgaattt gcggatagta ccatttgatg
     1741 aattcgcgta tgccgttggc gcccatgtca ggtatgtgaa tgtagccgac gcgtccgccc
     1801 gctgcttctt caactttctt gcggttgcga gtgacccaat ccaggtaaat cagattgcct
     1861 tcatcggtga tcggacgata agaaaccgtg cgcgagccgt ccatcgtcgg tttgctgttg
     1921 accgtgagct gcactgggtt gtcagcttta ttgcgcagca gacggtaagg atcgtcgttc
     1981 gctttcagct cttcaccgtc aatagccagc acgtaatcgc cgacattgac gttgacgccg
     2041 atctcattca gaggcgagcg gtaaagatcc tcgtcatttt gcccctggaa ggttttggaa
     2101 atgcgatagc ggcccgactg cttatcaagt tcaaaacgag cgcccggcaa acctacgcgc
     2161 gggcgcggtg gaatctgaaa gtcgccgcct tcaatgtagg cgtgctgcac cgaaagctcc
     2221 gagaccattt cgctgataac ataattcaag tcagaacgat gcgcgacgta ctgcaatagc
     2281 ggtttgtatt gttcgcgcag agcgacccag tcatagccgt gcatgttcgg cacgtagaac
     2341 caatcgcgat agcggcgcca gacttcgtta aagatctgat tccactcttg tgccgggacg
     2401 cgatcgacaa ccaggccagc cgtcgaaaca ggctttctgg ttttgtcgcc caccggcgtg
     2461 gcatcgtaca ggccatatgt cggcccggac ctgaccagaa ctttcgatcc gtcgcgtgat
     2521 aaggtgtatc cgccgatgtc ttccgcgagt gttgtttctt ttctgtcttt gatcgaaaaa
     2581 agttttagct gcgccggccg atcaccttgc cggccataat aaaaagccga tccgctcgcg
     2641 tagagtagaa aaccagtctt ggcagaaaga gcgccatagt tatccgcgcc gatcggcgcg
     2701 cgcgcgacgc gcgtcatgat gccgtcgaaa tcgaccacta gagttttctg tggcggcgct
     2761 gccggtttcg cgtcgggctt cggttgctcg ggctcttttg tttcagcaga ggcttggcct
     2821 tcgccttctt tcggtttgct caccgcaact tcgtcgctct ccggcgggaa cgggtgcttg
     2881 acgtctttgc gcagcgccat cgcataaatg tacgccatgc gattcgtcgc aaagttgaat
     2941 tcagtttgcg aaatctgggg cgcgaattcg tggtcgctga tgaaatagag atagttgccc
     3001 tgcggatccc acgccggatt caccgcattg aacatctcgc tcgtgacgcg atgaatctgg
     3061 ccgtcggtcg cgctccagac gtaaatctgc gaatagccgc tactgtttgt cggcatactg
     3121 tacgcgagat agttgccgct gggtgaccag acgtagtcgc gaatctggcc gcgcggtgaa
     3181 tcgacgatct cgatcatctt tcgatccgcg agcgtgacta caaaaatctt gccgtccttg
     3241 tcgctgaagg cgattcgttt gccgtcggct gaccactctg gtccgtagcg catcgcgctg
     3301 ccgccgttgg taatctgttg cggcggcttc gaaccgtctt gcggcacaag gtaaagctct
     3361 tcttcgccgc tcatgtcaga gataaaggcg atctgcgatc catcgggcga ccatgctggc
     3421 cacttgtcgt gtgcgccgga agaatgcgtg agattgcggg tcggtccctt ctcgatcggc
     3481 gcggtgaaga tgtcgcgcgc gcggagaaaa gtgcgcgctc gcctttcgga ctcaggtcgt
     3541 acgactcgac gttgtttgct actgagatac gactcggtcg ccgcgccagt ccatcgtcgg
     3601 gcacggtgat cgagatgggc gtggcctttc cgctcttcgc gtcgagcacc tgcagctcgc
     3661 cgtccatttc gtaaacgatg cgcccgtcgt gatcggaact cggccagcgc acgtcccatt
     3721 gcttgctgtg cgtaatttgc gacgtcttac cgcttgagac gttgtaaccg tagagattga
     3781 aatgaccgtc gcgatcggaa ttgaaataaa tcgtgtcgcc catccagatc ggatcgcgcg
     3841 ttgcccgcgg gccgtcggtg atcggtttcg tgtcgtaagt tttgagatcg aaggtgtaaa
     3901 gcttgtttgc ctgtccaccg ccgtagcgtt tctcaggtct gaaatcgcgg aattgcggcg
     3961 agtaaaccat ctgcgcgcca tcaggagaat aatcgccgga acctgcttcg ggcattggca
     4021 gaggctccgc cgggccgccg tccaccgaca cgctgtaaag ccgcgcgatc ggcaacgtcc
     4081 acgaatcacg cagcgagcga aaaattactc gcttgccgtc tttgctccag ccataaacct
     4141 gattgtccca gccccagcgt ggcgccagtg ggccccttgc gggataaaac gtaagctgct
     4201 tcggcacgcc gccggttgcc ggaattatgt aaacctgttc gtcgccgtcg tactgtccgg
     4261 tgaacgcgat ccagtttcca tctggagaaa acttggcaaa gacttcgacg ccgggatggg
     4321 cagtcaatcg aattgccgtg cctcctgttg ccggcgcagt ccaaatgtcg ccgccataag
     4381 tgaaggcgac ccggtcgccg tgaatgtcgg ggaagcgcag caacctggtt tgagcaaagg
     4441 ttgcgctgac tgcgaccatc aggaaggcga ccagggtcgc cgttcccagg aaacgagcga
     4501 agatgtttct cttgaacacg agggatgcct cctggaatgc gaaagtcaaa ctcagagtta
     4561 actggttgaa actgaattga acgccgacgc gaaggatttc cgccaggcca agtttacgca
     4621 caacctcggc gcgaggtttc agaatgttga tttgatggag agactgagag acgcgcgcgc
     4681 cagacaacga gcccgcgtct ctattagtcg attgtccgtc gcgctggctc gcgttacggc
     4741 ttctttgtcg ggctggccat agcctttggc gacgccattg gcttcatgtt ggcattaccc
     4801 atcttcatgt tggccggcat gttcgcattg ctcggtgcct tgttagccgg agccatgttc
     4861 gccggctttg tcatgttggc gttcgcgttt tcgttcgacg cggtgccgca accagcgaca
     4921 aatatcccga gagatacgat cgcaaccatc gccgcgattt tggacttact cataaagcct
     4981 cctctttagt tggcaatcac gaacaccgag atgttcgatc agtttagtcg aagagcctga
     5041 aacgttttcc gaaggctggc ccaaagaacc gcagcccgga ggttgatctt gcggagcgga
     5101 tattagaaca ctttctggaa gtcacgcaag aaaaaggacg cgaggccggc cgcgacgata
     5161 actcaccact tgatcgagcc ttcttttgaa gtgtcgatct gggccagatc gttcgagccg
     5221 taaaagaaac ctttcatatt gtccatcaga aagccctgag cctcgggatt cgtcagatcg
     5281 aggccgtaat gattgatgat tcgcgtttgt gcttgcagcc attcagacca gcaaggctgg
     5341 caaacctcag tcgccacttt ctggcccagt tcggtgggca atggagcgaa tcccagcggc
     5401 ggtcgcttct ggccgcagcg cgcacatttc atttcgtcag acattggtta gtttcacctc
     5461 ggggaggatt atagcctttg gaatcggaaa gacagaggcc cgaagggccg ctagttaata
     5521 gccacgacgt caggtcgtgg atccgagtca gagttgacac gagttgaggc ccaacgggcc
     5581 gacactgcat ttcaatccca gaggtaacgc tcgggtcgtt tgctccttcg tagtcaaaac
     5641 gtgtcggccc ttcgggcctc agtgagtgaa ttgctttacc tgctccacga ccttacggtc
     5701 gcggctatta actagcggcc ctccgggcct catgttttct gcgcttcccg gatcgcccga
     5761 atgatgtcgt catcgtttgg tcgaaaaaga ccgacaggcc gcacgtctcg ataacgaatg
     5821 acgccgtttg catcaatgac aaaaaccgag cgcgcaactt ttccgggaat caacgagcgc
     5881 gcaccgtaag cgtcggcaac tcttcgtccg gtgtcagaaa gcaaacgcag cggcaagttg
     5941 tgatgcacag cgaaactgtg atgcgactcg acaccgttcg ctgagatgcc gacaacttcc
     6001 gcgccggtgg cggcgtattc ttcccatcga tcgcgcaccg cacacatctg gcgcgtgcaa
     6061 attggcgtct cgtcgccggg atagaaaagc agaaccacaa ctttgccgcg gtgatctgac
     6121 agacgccatt gggtgtcttc gctatcctgc agcgtaaact ctggcgcagc catgccttct
     6181 cggactgttg ctgtttcgct cacttgatga atgacgcgag actcgccgcg gcgaactgcg
     6241 ttcgaatctc caattcgttg ccgtgcgtcg tgatcttcag attgtcgaga gcgctttgcg
     6301 ccagc
//
LOCUS       DASZZE010000411         2977 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_222520, whole genome shotgun sequence.
ACCESSION   DASZZE010000411 DASZZE010000000
VERSION     DASZZE010000411.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2977)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2977)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2977
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222520"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..286
                     /locus_tag="VHD88_07950"
     CDS             <1..286
                     /locus_tag="VHD88_07950"
                     /inference="COORDINATES: protein motif:HMM:NF026049.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21767.1"
                     /translation="GYLNATELADYLVRKGMPFREAHETVGRIVVHAIERGTELSDLL
                     LTDLKSFSTLIEQDVFASLSLEQTLATKSQTGGTAPERVAEELKSARGRL"
     gene            492..1190
                     /locus_tag="VHD88_07955"
     CDS             492..1190
                     /locus_tag="VHD88_07955"
                     /inference="COORDINATES: protein motif:HMM:NF014970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MvaI/BcnI family restriction endonuclease"
                     /protein_id="HVS21768.1"
                     /translation="MAIFITAQTLDRKEGVRRINLLAGKDLRPMAEQYGIPVWKNGRE
                     NKGWAGLVIEHYLGLPQNSRQEPDFLTWELKVVPLRKDADGKLRVKESMAITMLEPTE
                     VLANKFEDSHLYDKLRSMVVISRIYESAQESHSILHAAAEFDLDNPKIHEQVKDDYET
                     IRQRIRSSGIDSVTGDLGKLVQARTKGRGHGSTTRAFYARPIFVAHILNLQKLASMPR
                     VFALDGFPLPLGEG"
     gene            1341..2720
                     /locus_tag="VHD88_07960"
     CDS             1341..2720
                     /locus_tag="VHD88_07960"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HVS21769.1"
                     /translation="MTKVIERPEESSRATEIDTGVCPVCDRYVQGKLFSIATLPENLQ
                     SIITPNAATVDATEVCEHCIEIFSRAQRQTETHAAVFEQNDSVLPTPLRMDADERFTG
                     RGVTIAFLDSGFYAHPDLTKPRDRILAYHSIFAVEGDQTSLKTNDLASWHGMMTSVVA
                     AGSGALSDGFYRGIASDADLALVKIGRTGRISEDQIRRGLEWVLAHREEHDIRVVNIS
                     AGGDFEESYLTNPLSQTVERCTRAGLTVVCAVGNAGHVPTHPVLPPASAPSCIAVGGL
                     DDQNSLDRARRGMYRSSYGPTIDGLQKPEVIAPGIWVAAPILPRTPTAEQADLYSKLD
                     QSPDEELRGKIVQHVGVDKDLDEARDLPAPLLRQLITIKLREGNVINQHYKYVDGTSF
                     AAPIVSSIIACMLEANPRLSPQQIKRILIDTAERMPDIEVERQGWGVVSARRAVESAL
                     ALREAVTRP"
BASE COUNT          686 a          806 c          880 g          605 t
ORIGIN      
        1 gggctacttg aacgcaaccg agctggccga ttacctggtg cggaaaggca tgccctttcg
       61 cgaagctcat gaaactgttg ggcgcatcgt cgtgcatgcg attgaacgcg gtactgagtt
      121 gagcgatctg ttattgaccg acctcaaatc tttttcgacc ctgatcgagc aagacgtttt
      181 cgcatcgcta tcgctcgaac agacgctggc tacgaagtcg cagactggcg gcacagcgcc
      241 ggagcgggtt gcggaagagc tgaagagtgc gagagggcgg ttgtagtagt agcagccgct
      301 ctgaaagggg gtcgttatta accgcaaagc ggttgcagcc ttcagcccag ggttgcagcc
      361 gcggctaccc tggggaacag gtttatcgcg atgatgtcca accccaacgg ggttgcgact
      421 ggtagcgatg ttacatagat gaatacccag aaaggcgcaa ccgcgttgcg gttgactgcc
      481 tttaatttca aatggcaatc ttcatcacgg ctcaaacact ggatcgcaaa gagggcgtgc
      541 ggcgcatcaa tctgctcgcc ggcaaagacc tgcgaccgat ggctgaacag tacgggattc
      601 cagtttggaa aaatggccgt gaaaacaaag gctgggcggg tttggtaatc gagcattacc
      661 tcggcctgcc gcaaaattct cgacaggaac ctgatttcct gacttgggag ttgaaagttg
      721 tgccgctgcg aaaggatgct gacgggaagt tgcgagtgaa agaatcgatg gccatcacga
      781 tgttggaacc gaccgaagtg ctcgcaaaca aatttgagga cagccatctt tatgacaagc
      841 taagaagcat ggttgtgatc agtcggattt acgaaagcgc acaggagtcg cattcgatcc
      901 tgcacgcggc ggccgaattc gatctcgaca atccaaagat ccacgaacag gtgaaggacg
      961 actacgaaac gatccgtcag cgaattcgct cgagcggcat tgactcagtc accggagatt
     1021 tgggaaaact ggtgcaggcc cgcacgaaag ggcgcggcca cgggagcact acgcgggcgt
     1081 tctatgcgcg accaatattt gtggcgcaca ttctgaacct gcaaaaactg gcgtccatgc
     1141 cgcgcgtttt cgctctggat ggattccctc tccctctggg agagggttag ggagagggcc
     1201 tacgacgcac cacccatgaa attaattcga ttcggggcgt tccgactcta ggctgcgcgc
     1261 cctctcccca gccctctccc aaagggagag ggagtttccg gcagttgcag agcttgaagc
     1321 cagaactagt ttgaagttga atgacaaaag ttatcgaacg gcctgaagaa agttcgcgag
     1381 ctaccgaaat tgatacgggc gtttgcccag tctgcgatcg gtatgttcag ggaaagcttt
     1441 tctcgatcgc gacgctgccc gagaatctgc aatcgatcat cacgccgaac gcggcgacgg
     1501 ttgacgccac cgaagtttgc gaacactgca tagaaatctt cagtcgcgcg caacggcaga
     1561 cggaaacgca cgccgcggtg ttcgaacaga atgattctgt cctgccgacg cctttgcgca
     1621 tggacgccga cgaacgattc accggacgtg gcgtgacgat cgcgtttctt gattcaggtt
     1681 tttatgcgca tcccgatctt actaagccgc gcgatcgcat tctcgcttat cacagcatct
     1741 tcgccgtcga aggcgaccag acttcgctta agacaaacga cctcgcaagc tggcacggca
     1801 tgatgacttc agtcgtcgcg gctggcagcg gcgccctgtc cgacgggttc tatcgcggca
     1861 tcgcgtccga tgctgatctc gcgctcgtaa agattgggcg caccggccgc atctccgaag
     1921 atcaaattcg gcgcggcctc gaatgggtgc tggcgcatcg cgaagaacac gacattcgcg
     1981 tcgttaatat ttcggcgggc ggcgactttg aagaaagtta tcttactaat ccgttgtcgc
     2041 aaacggttga gcgttgcacg cgcgcaggct tgaccgttgt ctgtgcggtc ggaaatgccg
     2101 gccacgtgcc gacgcatcca gtgctgccgc ccgcaagtgc gccgtcgtgc atcgcagttg
     2161 gtggtctgga cgatcagaac tcgctggatc gcgcgcggcg cggcatgtat cgctcgtctt
     2221 acggaccaac gattgacggt ttgcaaaagc cggaagtaat cgcgccggga atttgggtgg
     2281 cggcgccaat tctgccgcgc acgccgacgg ctgaacaggc ggacctgtac tcaaagcttg
     2341 atcagtcacc agacgaagaa ctgcgtggaa agatcgtgca acatgtcggc gtcgataaag
     2401 atctcgacga agcgcgcgac ctgcccgcgc cgttgctgcg gcaattgatt acgatcaaat
     2461 tgcgcgaggg caacgtcatc aatcagcatt acaagtatgt tgatggcact tcgttcgctg
     2521 cgccgatagt ttcgtcgatc atagcgtgca tgttggaagc gaatccgcgt ctgagcccgc
     2581 aacagatcaa acgcatcctc atcgatacgg ccgaacgcat gcctgatatc gaagtcgaac
     2641 gacaaggctg gggcgtggtt tcagcgcggc gcgcggttga gagcgcgctg gctttgcgcg
     2701 aggcggtaac ccgaccgtga gagagggagt caattgcgcc cttgcttacg cgcgggctac
     2761 tgccccgctc gtctagacat ccgctttgcc gctgtgccag aatcctccgg cgaaattccg
     2821 aaatgcgaag aggagcaatt cgaagtctct atgtctgaaa gcgagtccgc accaaccgac
     2881 ccacagaatg cacaggcagc ttccaacacg gaagagataa cctatcaggc cgtcgaaaag
     2941 gacggcgtcg ttaccgccat ctgggagatg aaagggc
//
LOCUS       DASZZE010000412         2614 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_173860, whole genome shotgun sequence.
ACCESSION   DASZZE010000412 DASZZE010000000
VERSION     DASZZE010000412.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2614)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2614)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2614
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_173860"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..694)
                     /locus_tag="VHD88_07965"
     CDS             complement(<1..694)
                     /locus_tag="VHD88_07965"
                     /inference="COORDINATES: protein motif:HMM:NF013539.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA];
                     GO_process: GO:1901135 - carbohydrate derivative metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HVS21770.1"
                     /translation="MSLMLQEIAEQPAALQKTIAEERGKIERLGHSLKQRDIDLIVLV
                     ARGSSDNAALFGRYLLEITTGIPVSLSAPSVHTLYNAKLDLKHALVIGVSQSGEGEDI
                     NRVLENARACGAFTIGITNEPASSMVKLVDETLLMHGGRERSVAATKTFTGQMLLFYM
                     LSAALAQDGRAIDYRSIPGLAERALEQKPAIVELVQRYVFMENCVVVGRGLAYANAYE
                     FALKLMETCYVVA"
     gene            810..>2614
                     /locus_tag="VHD88_07970"
     CDS             810..>2614
                     /locus_tag="VHD88_07970"
                     /inference="COORDINATES: protein motif:HMM:NF012931.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-N-acetylhexosaminidase"
                     /protein_id="HVS21771.1"
                     /translation="MKTTLTRTFIRRTAILGAFAFACVGANAQTPNAQIIPAPKQLTA
                     REEKFEIGLDTRMSLADGQSAEDRFAAQDFIDDVKQTAGVTVRLGGNSARREILIGRI
                     DLTRIQQALKRAAVDADQKLNDEGYVLSVGLHEVVVAGKTTTGTFYGLQTLKQLVRGE
                     GASALIPGVTIVDWPTMRWRAVSDDISRGPVPTVDYIKRQIRTEAFFKLNMHSFYMEH
                     TFASESNPLIGPSGGSLTPDEIRELVAYARCYHVELVPEQQTFGHLHKALRLEKYAEL
                     AETPYGDVLSPQQPGSYKLIADWYKELNELFPGQFFHIGEDETFELGEGQSKDEAKAK
                     GVGAVYFEHLNRVRDVLKPYKRRLMFWGDIALHHPDLIGNVPKDMIAMNWQYGAADDY
                     SKFIKPFKDAGLDQFVCPGAHNWNQIFPNIEGAAQNIANFVRDGQQAGALGMMNTTWD
                     DDGESLFESAWYPITLGAAASWQEGVFDLQRFDRDFDWAFFRADGDQFVKVTHALGGI
                     PTLLNAGTTDELFWRDPFTTQFQNQARNMVERTSSTRLLAERALEMLIQNDKLARRNR
                     ATLAAMRLAAQRYDHLGRRMEVMQKFSDQYWDAYL"
BASE COUNT          600 a          724 c          751 g          539 t
ORIGIN      
        1 cggcgaccac gtagcaagtc tccatcaact tcagcgcgaa ctcgtaagca tttgcgtaag
       61 ccaagccgcg gccaacgacg acgcagtttt ccataaagac gtagcgctgg acgagttcga
      121 ctatcgccgg cttttgttcc aacgcgcgct cagctagacc gggaatcgat cgataatcga
      181 tcgcccggcc atcctgcgcc agcgcggcgg agagcatgta aaagaggagc atctgaccgg
      241 tgaacgtctt cgtcgccgct actgatcgct cgcgtccgcc gtgcatcagc aacgtttcat
      301 cgaccagctt gaccatcgac gacgccggct cgttagtgat accaatcgtg aacgcgccgc
      361 acgcgcgcgc attctctaaa acgcggttga tgtcttcgcc ttcgcctgat tgcgaaaccc
      421 cgatcacgag cgcatgtttc agatccagct tcgcgttata gagcgtgtga actgacggcg
      481 cggacaacga caccggaatg ccggttgtga tttccagcaa ataacgaccg aataacgccg
      541 cgttatccga gctgccgcgc gcgacgagca cgattagatc gatgtcgcgt tgtttgagcg
      601 agtggccgag gcgttcaatc ttgccgcgct cttcggcaat cgttttctga agcgccgcag
      661 gctgctcggc gatttcctga agcatcaggg acatgatgat ctcatccgat gaccattgta
      721 ttcgccatca atatcaggta aatagtcgtg cgttcttcaa caaaaactct tcagcgaaaa
      781 ttatgacggt cataagcgcc ttctaatcaa tgaaaacaac tctaacacga actttcatcc
      841 ggcgaaccgc aattctgggc gcgtttgcgt ttgcttgcgt cggggccaat gcccagacgc
      901 cgaacgcgca aatcattccg gcgccaaaac aactcacggc tcgcgaagaa aaattcgaga
      961 tcgggctgga cacgcgcatg tctctggcgg acggacaatc ggccgaggat cgtttcgctg
     1021 cgcaggattt catcgacgat gtgaagcaga cggcgggagt gaccgtgaga ctcggcggaa
     1081 acagcgcgcg ccgcgagata ctgatcggcc ggatcgatct gacaaggatt cagcaagccc
     1141 tgaagcgagc agccgtcgac gctgatcaga agttgaacga cgaaggatat gttttgtcgg
     1201 tgggcttgca cgaagttgtc gtcgccggca aaaccacgac cggaacgttc tatgggttgc
     1261 aaacgctcaa gcaactggta cgcggcgaag gagcaagcgc gttgatcccc ggcgtcacta
     1321 tcgtcgattg gcccacgatg cgctggcgcg cggtttcaga cgacattagc cgcggcccgg
     1381 ttccgacggt cgattacatc aagcggcaga ttcgcaccga agcgttcttc aaactcaaca
     1441 tgcactcctt ttatatggag cacacgttcg cgagtgaatc gaaccctttg attggaccaa
     1501 gcggtgggtc gcttacgcct gatgaaattc gcgagctggt cgcgtacgcg cgctgctatc
     1561 acgttgaact ggttcctgaa cagcagacgt ttggtcattt gcacaaagct ttgcgcctcg
     1621 agaagtatgc cgagctggcc gagacgcctt acggcgacgt gctctcgccg cagcagccgg
     1681 gaagctacaa actgatcgct gattggtata aggagctgaa cgaacttttc cccggtcagt
     1741 tctttcatat cggcgaggac gaaacgtttg aactcggcga ggggcagagc aaggatgagg
     1801 cgaaagcgaa aggcgtcggc gcagtttatt tcgaacatct caatcgcgtg cgcgatgtgt
     1861 tgaagcctta caagcggcgt ttgatgtttt ggggcgacat cgctctgcac catcccgatc
     1921 tgatcggcaa cgtgccgaaa gacatgatcg cgatgaactg gcaatacggc gcagccgacg
     1981 actactcaaa atttatcaaa ccgttcaagg acgcgggact ggatcagttt gtttgtccgg
     2041 gcgcgcacaa ctggaaccag atctttccca acatcgaagg agcagcgcag aacatcgcga
     2101 actttgtccg tgacggacag caggccggcg cgctcgggat gatgaatacg acgtgggacg
     2161 atgacggcga gtcactgttc gaatcggcgt ggtacccaat cacactcggc gccgcggcct
     2221 catggcagga aggggttttt gatctccaaa ggttcgatcg tgatttcgac tgggctttct
     2281 ttcgcgccga tggcgatcaa tttgtgaaag tcactcatgc gctcggtggg attccgacct
     2341 tgctcaacgc gggcacgacg gacgaactgt tctggcgcga cccgtttaca acgcagtttc
     2401 agaatcaggc gcgcaatatg gttgagagga cgagcagcac gcgcttgctg gctgagcgcg
     2461 ccctggaaat gctgatccaa aacgacaagc tcgcgcgccg caatcgtgcg acgctcgcgg
     2521 cgatgcgcct cgctgcgcag cgctacgatc atctcggacg acgcatggag gtaatgcaga
     2581 agtttagtga ccagtactgg gacgcgtatc tgaa
//
LOCUS       DASZZE010000413         6241 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_239892, whole genome shotgun sequence.
ACCESSION   DASZZE010000413 DASZZE010000000
VERSION     DASZZE010000413.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6241)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6241)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6241
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_239892"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(79..456)
                     /locus_tag="VHD88_07975"
     CDS             complement(79..456)
                     /locus_tag="VHD88_07975"
                     /inference="COORDINATES: protein motif:HMM:NF021486.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2203 domain-containing protein"
                     /protein_id="HVS21772.1"
                     /translation="MKLFTVEEANSLLPSVRRIVKSIQRSHRRLLSHEGTAKRAAEGA
                     AHGGGGTSHGTQYARLLIDLSLSANQLESLGVQLKDYARGLIDFPSMRDGRVVLLCWK
                     ADEGDQLEWWHDIEAGFAGRQPL"
     gene            complement(756..1118)
                     /locus_tag="VHD88_07980"
     CDS             complement(756..1118)
                     /locus_tag="VHD88_07980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21773.1"
                     /translation="MVQFNDIYDMASATRDATALAEQQRPNSQAAIVWLSDGIAPIFN
                     EDREATEQVLIRRNAIFNALTVDMRTLYKFLLPLGQPLIGWTGISLAGSAKRLAQQSG
                     GEAVHVSHVRDYGAGSLR"
     gene            1150..1428
                     /locus_tag="VHD88_07985"
     CDS             1150..1428
                     /locus_tag="VHD88_07985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21774.1"
                     /translation="MTELSFLIVRVMSAPFVPALVAPAPEPPKSDVAKKDEKNSQQGN
                     ASVSISSDTNQSKADDKTQTKPDEDVVETETIKAKRVLTLLPFARDRA"
     gene            complement(1376..1954)
                     /locus_tag="VHD88_07990"
     CDS             complement(1376..1954)
                     /locus_tag="VHD88_07990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21775.1"
                     /translation="MNSSTTSHAQSQSRKANLIEQTQRILFAPSRLCVILFLLLLAAL
                     PNPAQEVADTIKVRTRVVFMDALVKDKRTGIPISNLQLDNFEVFDDGKPRTISYFTRE
                     GQARKPLALILILDLRDDGAGGFLKREEIRRSDGGRLAKLPEGDEVAILAINLNSVDD
                     KTAAIRNGKALWLTDFTRDRAQMEAGLARALL"
     gene            complement(2198..3073)
                     /locus_tag="VHD88_07995"
     CDS             complement(2198..3073)
                     /locus_tag="VHD88_07995"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane glutamic
                     endopeptidase"
                     /protein_id="HVS21776.1"
                     /translation="MEARNFFLNDGGRLRSGWRLAVFAIAFLIFAKIGFAFKQAAPET
                     LNGTWGFVIGAGILFASATLVGWGCGAVFEELPFRAIGWSFHRGWFRNVAIGSALGAL
                     SLLLAAACAIATRGLSFSRDSLEAASIEKTLLVSAIIFVFAASAEEVLFRGYPLQTLT
                     RANLAWLGVLLTSVPFAVVHLNNPNVSRGFTFVNTALAGVWLAIAYLRTRSLWFPLGL
                     HWSWNWAQASLLGLPVSGIDRLAPAPLLHAMNAGPDWLTGGAYGIEGGAACTIALLIS
                     TLVVWRTKLIVRAVL"
     gene            3194..5512
                     /locus_tag="VHD88_08000"
     CDS             3194..5512
                     /locus_tag="VHD88_08000"
                     /inference="COORDINATES: protein motif:HMM:NF013179.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HVS21777.1"
                     /translation="MSKPKNGSDEVSDIRTRRRVVLWLLGGIVFVLLAIIVAQQLFNL
                     GAVLPTETGSDTLLLYALSALNFAAFIVFSFILLRGLLKLRRERRDRQPGSKIQTRLL
                     AYFIGLSLLPIAAMAAFSYLFINRSIEKWMGRLPENVVERVRQQQRDSLAAQNRNLHE
                     TATLLATAIREKPQSEWQATLDQLAATGELSAIEIVSDKGDVFAHSETSIPDSQRAEL
                     NALLQQAREPGAQAEALTDGKGFDLTFVPLTGVWRLVLAPPRLSDIDVNDTIAGSQRE
                     YQHLLERQRKVRLLGLSTLGLMTLLLLFASTWVAVHLARGFAAPIKSLAEASREVARG
                     NLSHRVNALGDDELALLAESFNQMTAQLDENRRHIESGAAALKEKNLALEERRNYIET
                     VLESLSTGVVSLDQNDCVTTINAAAASMLKLSEPPPAWAKLSSLLSNDDRGVLERLLR
                     RARRAGRAAEQSQLTRGAATNAIPVALTATALRANSESGRGAVLVIEDLSELLAAQRA
                     AAWSEVARRMAHEIKNPLTPIQLSAERIARNFGVRLNGEGAEPQGHRTARGSERVTAN
                     GNGGNDSAALDLTEENREELTRVVEECTTSITREVAGLKALVDEFSRFARLPNPRLEL
                     GDLNEVIRQSALLYEERLEGVELRLNLADELPLAMFDTEQIKRVFVNLTDNALEALNG
                     ISGERRVTIATHYDENRDVVVAVVKDTGEGIPAGDFKRLFQPYFSTKGRGTGLGLAIV
                     ERIIGEHDGRIYAEANQPRGARFVIEIPVSGQ"
     gene            5521..>6241
                     /locus_tag="VHD88_08005"
     CDS             5521..>6241
                     /locus_tag="VHD88_08005"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HVS21778.1"
                     /translation="MSESILIVDDERGIRETLSAVLRDEGFVADAVATGEDCLKAISS
                     RAYGCVLLDVWLPGINGLETLRQMRDSNCDAAVVIISGHGNIETAVRATKLGAFDFIE
                     KPLSIEKTVLTVRNALRQRQLELVNEELTAELKEEYAMVGESVTMRALRKQIAVVAPT
                     DGRVLISGESGAGKELVARAIHAQSRRAAAPFVEVNSAAIPEELIESELFGHVKGAFT
                     GATAAKKGKFDMADGATLFLDE"
BASE COUNT         1354 a         1746 c         1839 g         1302 t
ORIGIN      
        1 agacgcgtta gatggtatca gactttactt taactcgtca acgagaaaat atagcaggcc
       61 ttgaggttgt ctgaggcact aaagcggctg tcgaccggcg aatccggctt cgatgtcatg
      121 ccaccattcg agctgatcgc cttcgtctgc tttccagcaa agcagaacga cgcggccgtc
      181 gcgcatcgac gggaaatcaa tcaggccgcg cgcgtagtct ttcaattgca cacccagact
      241 ctcgagttga ttggcgctca gcgataagtc gatcagcaat cgcgcgtact gcgtgccgtg
      301 cgacgttcca ccgcctccat gcgcggcgcc ttcggccgcc cgttttgcgg tgccttcatg
      361 cgagagaagg cgacgatgcg aacgctgaat cgattttacg attcgacgca cactcggtag
      421 cagagagttt gcttcttcga cggtgaatag cttcatcagg aatcgcggtg gcaaggtggc
      481 gctcgcaact ttctcacttg agcgtgacct tgccgccgat gaagctacat cttactaatt
      541 tgataacgta ggcgctactt gtttgacgct gactgatcgg catcgccttt cggcaccgaa
      601 gtaaccgcgc cgcgcactca cgtccagttt gcgcagtttg cctttagcgt cgagtgcctt
      661 cacgcggatg ccaagttcgt gcatgcgtcc gtcgtctttc tctttttgct cactcagcgc
      721 aaaccccagg ctgtatcgcg cagtgagagc cccgattacc tgagcgagcc tgcgccgtaa
      781 tcgcggacgt ggctgacgtg caccgcttcg ccgccgctct gttgggcgag acgcttggcg
      841 ctgccggcca ggcttatgcc ggtccatcca atcagtggct gaccgagcgg cagcaagaac
      901 ttgtagagcg ttcgcatgtc cacggtcagc gcgttgaaga tcgcattgcg gcgaatcagg
      961 acttgctcgg tggcttcgcg atcctcgttg aagatcggag cgatgccgtc tgacagccaa
     1021 acaatcgctg cttgagaatt agggcgctgc tgctctgcca gagcggtggc gtcgcgcgtg
     1081 gccgatgcca tgtcgtaaat gtcgttgaat tgaaccacga ccttcccatt gctgctcacc
     1141 cttttcacat tgactgagct gtccttcttg atcgtgcgag ttatgagtgc gccattcgtt
     1201 ccggctctcg tagcgcccgc gcccgaaccg cctaagagcg acgtagcgaa aaaagatgag
     1261 aagaactcac aacaagggaa cgcgagcgtc tccatctcat ccgacacaaa tcagagcaaa
     1321 gccgacgaca agacgcaaac caaacccgat gaagacgtag tcgaaaccga aacaatcaaa
     1381 gcaaagcgcg tgctaaccct gcttccattt gcgcgcgatc gcgcgtgaag tcagtaagcc
     1441 agagagcttt gccattcctg attgcggcag tcttgtcatc aacgctattc aggttaattg
     1501 cgaggatggc gacttcgtct ccctccggaa gtttggccag tcgtccacca tcgctccggc
     1561 gaatctcttc gcgcttgaga aagcccccgg cgccgtcgtc gcgcaaatcg agaatcagaa
     1621 tcagagccaa tggcttgcgc gcctggcctt cgcgagtgaa ataagagatc gtgcgcggct
     1681 taccgtcgtc aaagacctcg aagttatcga gctgtaggtt agaaatggga atgccggtgc
     1741 gcttgtcttt gaccagcgcg tccatgaaga cgacgcgcgt gcgcaccttg attgtgtcgg
     1801 cgacttcctg ggcagggttt ggaagtgccg ctaacaagag cagaaaaaga atcacgcaaa
     1861 ggcgcgaagg cgcaaagaga atacgctggg tctgttcgat gagatttgct ttgcgacttt
     1921 gcgactgagc gtgagatgta gttgatgagt tcatgattct tgcctcctct tgctctttct
     1981 aacattccac cctccctcac ggtcgggttt ctgccagatt gactcgatat cagttgtcgt
     2041 agtttgcttc agcctcgaac atctgcgcgc ctcgttcaaa cctttcggaa aaatcagttg
     2101 cggctagcgt cagcgcaaag cgtgaattgg tgattctgtc tttgcgcttg tctgacatgg
     2161 cttaagacgg gaaacgcgga gagagtgtta acgcaaatca caaaacagcg cggactatga
     2221 gtttcgtgcg ccagacgacg agcgtcgaga tcagcagcgc aatcgtgcat gcagcgccgc
     2281 cttcgattcc gtacgcgccg cccgtcaacc aatctggtcc cgcgttcatc gcgtgcaaca
     2341 aaggcgccgg cgcaagtctg tcgatgccgc tgaccggcaa accgagcagg gaagcctgcg
     2401 cccagttcca cgaccagtgc aagccgagcg gaaaccacaa gctgcgcgtc cgcagatatg
     2461 cgatcgccag ccagacgccg gcaagcgcag tgttgacgaa cgtgaaaccg cgcgagacgt
     2521 ttgggttgtt cagatgcacc actgcgaaag gcaccgaagt caacaagaca ccgagccacg
     2581 caagattcgc gcgcgttagt gtctgcaacg ggtaaccgcg aaacaagact tcttcagccg
     2641 aggctgcaaa gacaaagatg attgcggaga ccaggagcgt tttttcaatc gacgctgctt
     2701 ccaatgaatc gcggctgaag ctgagacctc gtgtggcgat agcgcacgcg gcggcaagca
     2761 gaagcgatag agcgcccagc gccgacccaa tcgcgacgtt gcggaaccag cctctgtgaa
     2821 atgaccaacc tatcgcgcga aacggcaact cttcgaacac ggcgccgcat ccccagccaa
     2881 ccagagtcgc ggacgcgaac aagatgcccg ctccaattac aaagccccag gtgccattca
     2941 aggtttcggg cgcagcttgt ttgaatgcga aaccaatctt ggcgaaaatt agaaacgcga
     3001 tcgcaaagac ggcgagccgc cagccgctcc gcagacggcc tccgtcgttt aggaaaaagt
     3061 tgcgagcttc catcgggtcg cagcattcta acatttcaag ctcttcagcc tgttcagttt
     3121 gggtgagtgt ggagaagcgg ttatgctaaa ctttccgcaa gcttagacca gaaatcatca
     3181 actaactgtt tccgtgagca aacctaagaa cggttccgac gaagttagtg acatccgcac
     3241 gcgacggcgc gtcgtcctct ggcttttggg cggcatagtt ttcgtgctgc tggcgatcat
     3301 cgtcgcccaa caactcttca atctcggtgc ggtcctgccg accgagacgg gttcagacac
     3361 gcttctgctt tatgcgcttt cggcattaaa ctttgcggct ttcatcgtct tcagtttcat
     3421 tctgctgcgt ggcttgttga agctgcgtcg cgaacggcgt gatcggcaac ccggctcgaa
     3481 gattcaaacg cgtctgcttg cttatttcat tggtctgagt ttgctgccca tcgccgcgat
     3541 ggccgcgttc tcgtatctgt tcatcaatcg ctcgatcgaa aagtggatgg gccgcttgcc
     3601 ggaaaacgtc gtagagcgcg tgcgccaaca gcagcgcgac agtttggcgg cgcaaaatcg
     3661 aaacctgcac gagacggcga cgctgctggc gaccgcgatc agagagaagc cgcaatcgga
     3721 atggcaagcg acgttggacc agttggccgc gaccggagag ctttctgcaa tcgaaatcgt
     3781 ttctgacaag ggcgacgtat tcgcgcacag cgaaacttcg atccctgatt cgcaacgcgc
     3841 tgaactgaac gcgctgttgc agcaggcgcg cgaacccgga gcgcaagctg aagcgctgac
     3901 ggatggcaaa ggatttgatc tgacttttgt tccgctcacg ggcgtctggc gccttgtgct
     3961 tgcgccaccg cgcctgagcg acatagacgt caacgacacg atcgcgggtt cgcaacgcga
     4021 ataccagcac ctgcttgagc gacagcgcaa agtgcgtctc ctcggcttgt ccaccttggg
     4081 gctgatgacg ctgttgcttc tgtttgcatc gacctgggtg gccgttcacc tggcgcgcgg
     4141 atttgcagct ccgattaaat cgctggccga ggcttcgaga gaagtggcgc ggggaaatct
     4201 ttcacaccgc gtgaacgcgc ttggcgacga tgaactggct ttgctggccg aatcgttcaa
     4261 tcagatgacc gcgcagcttg atgagaatcg ccggcacata gaatccggcg cggctgcttt
     4321 gaaggaaaag aatctggcgc tcgaagaacg tcgcaactat atcgagactg tcctggagtc
     4381 gctttcgacc ggagtcgtct cgctcgatca gaatgattgc gtcacgacga ttaacgccgc
     4441 cgccgcgtcg atgttgaaat tgagcgagcc gcccccggcc tgggccaagc tttcgagtct
     4501 cttgagcaac gatgaccgcg gggtgctcga gcgtctgctc cgacgcgcgc ggcgcgcggg
     4561 acgcgcggcc gagcagagtc aattgacgcg cggcgctgcg actaacgcga taccggtagc
     4621 tttgaccgcg accgcgttgc gcgcgaattc agaatctggt cgcggcgcgg tgctggtaat
     4681 cgaggacctt tccgaactgc tcgctgcgca acgcgctgcc gcctggagcg aagtcgcgcg
     4741 acgcatggct catgaaatca agaacccgtt gacgccgatc cagctctcgg ctgaacgcat
     4801 tgcgcgcaac tttggcgtgc gtctgaacgg cgaaggtgca gaaccgcaag ggcacagaac
     4861 cgctcgcggt agcgagcggg ttacagcgaa tggcaacggc ggaaacgatt cggcggcttt
     4921 ggacctgacc gaagagaatc gcgaagaact cacgcgtgtg gtcgaggagt gcacgacgtc
     4981 gatcacgcgt gaggtggccg gcttgaaagc tttggtggat gaattctcgc gcttcgctcg
     5041 cttgccaaat ccgcgtttgg aacttggcga cttaaacgag gtcattcgtc agtcggcttt
     5101 gctgtatgag gagcgtctgg aaggcgtcga gctgcggctg aatctggcag acgaactacc
     5161 gcttgcgatg tttgataccg aacaaatcaa acgagtgttt gtgaacctga ccgataacgc
     5221 gttggaagct ctgaacggga tttcgggcga gcgccgtgta acgatcgcca cccactacga
     5281 cgagaatcga gatgtcgttg tcgcggtggt taaagacacg ggcgaaggaa ttcccgccgg
     5341 cgatttcaag cgactgtttc aaccctactt ttctaccaag ggtcgaggca ccggcctcgg
     5401 gctggcgatc gtcgagcgaa tcatcggtga gcatgacggt cggatctacg ctgaagccaa
     5461 tcagccgcgc ggcgcaaggt ttgtgattga gattccggtc agtggtcagt gatcaattgc
     5521 atgagtgaat caattctcat cgttgacgac gagcgcggga ttcgcgaaac gttgagcgct
     5581 gtcctgcgcg atgaaggttt tgtcgcggac gcggtcgcta ctggcgagga ctgcctgaag
     5641 gcgataagca gtcgggcata cggttgtgtg ctgcttgacg tgtggttgcc gggaatcaac
     5701 ggcctcgaaa ctctgcggca gatgcgcgat tcaaattgcg acgccgcggt cgtgatcatt
     5761 tccggtcacg gcaacatcga aacagccgtg cgcgcaacga aactcggcgc gtttgacttc
     5821 atcgaaaagc cgctctcgat cgagaagacc gtcctgaccg tgcggaacgc cttgcggcaa
     5881 agacagcttg agttggtcaa cgaagagctg accgccgagt taaaagaaga atatgcgatg
     5941 gtcggcgagt cggtaactat gcgggctctg cgcaagcaga tcgccgtcgt ggcgccgacg
     6001 gacggccgcg ttctgatttc gggagaatcc ggagcgggta aggagttggt ggcgcgcgca
     6061 attcacgcac aatcgcgccg cgcggctgcg ccttttgtcg aagtaaactc tgcggcgatt
     6121 ccggaagagc taattgagtc ggaactattc ggccacgtga aaggcgcgtt cacgggcgcg
     6181 acggctgcga agaaaggcaa gttcgacatg gccgacggcg ccacgctttt tctcgacgaa
     6241 g
//
LOCUS       DASZZE010000414         2805 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_62027, whole genome shotgun sequence.
ACCESSION   DASZZE010000414 DASZZE010000000
VERSION     DASZZE010000414.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2805)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2805)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2805
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62027"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(180..728)
                     /locus_tag="VHD88_08010"
     CDS             complement(180..728)
                     /locus_tag="VHD88_08010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21779.1"
                     /translation="MRRVFLITGLMTAFALAVLAVTAAAPANFAGTWALDKTKSQGLS
                     QRMQNADSVVWTITQDGKTISIDSKVTGGQPPAGGGGGMGGGRGPAGPQVYNLDGSET
                     SADVGGGQMTGKATSKTTWSKDGATLELSRKTTFQGPNGEVTNSSTQKLSLSGDGKVL
                     TATVHSEGARGAQDSTLVFNKQ"
     gene            complement(911..2542)
                     /locus_tag="VHD88_08015"
     CDS             complement(911..2542)
                     /locus_tag="VHD88_08015"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose synthase family protein"
                     /protein_id="HVS21780.1"
                     /translation="MLAILAIDPQPLTGNLCVDSPGFCDWYDKTAGNISSLYQLDAFD
                     WTVLIVYFGILTILAIYGMYRVKQVTEFWRYRKFPPKPKIAFAESQLPTITVQLPLFN
                     EMYVVERLVQAVTEIDYPRDRFEIQVLDDSTDETVSIAYATVEKYAREGFDIHYIRRD
                     DRTGFKAGALENGMRTAKGELIAIFDADFVPKPDFLRKLINYFTDPIVGCAQMRWAHI
                     NGSYNLLTRLQTIMLDGHFVVEQTTRNRSGNFFNFNGTAGIWRREAIEMSGGWQHDTL
                     TEDTDLSFRAQLMGWRFVYLLDEEAPAEIPVDINAFKAQQRRWAKGVLQVWFKLYRRI
                     WYAPLPMRVKLEMFFRLTGNISYPLMIVASFLQFPLLLVRYNQGLHQLMLLDVPLLFF
                     STVSVVLFYGSAVWYLDKQRGSRLLHLPLVMGLGIGLAFSNARAVIEALAGVKSDFVR
                     TPKYRVEKTHDESWKQKKYKRKRGWLPLLELSFAFYFVLAIAYALRMHMWGPIAFLLL
                     FCFGYGYMGLMSLLQTAGGKRGASAPRQSGAVARP"
BASE COUNT          634 a          810 c          741 g          620 t
ORIGIN      
        1 aacactttgc ggcaatggcc cttcttcagt ccggaacggg ttcgctttcc ggttccggcc
       61 ctcttcaaat caaatgccag tcgaggccgg agcctcgact ggcaaataag gcgcattgaa
      121 cggtaaggca agccttaccg cactccggct gcggcatagc cgcgaagtgc gaagtgaact
      181 tactgcttgt taaagaccag cgtcgaatcc tgcgcgccgc gcgcgccttc gctatgaaca
      241 gtagcggtca aaacttttcc gtcgccactc agcgaaagct tctgcgtgga tgaattcgtc
      301 acttcgccgt ttggaccctg gaaagtggtc ttccgcgata actcaagcgt tgctccgtct
      361 ttcgaccagg tagttttgct cgtagccttg ccggtcattt gaccaccacc aacatctgcg
      421 ctggtttcgc tgccatcaag gttataaacc tgcggtccag caggaccacg cccgccgccc
      481 atgccgccac cgccgccagc aggaggctgt ccgccggtga ccttgctgtc gatggaaatc
      541 gttttgccat cttgagtgat cgtccacacg acgctatcgg cattctgcat ccgctgcgaa
      601 aggccctgac tcttggtttt gtccagcgcc catgtgccgg cgaaatttgc gggcgcggcg
      661 gcggtgactg ccaaaacggc gagcgcgaac gcagtcatca atccggtaat caaaaaaact
      721 cttctcattc tgaaaatcct ccgtaaagtt tgtaattcgc ttgtctgcgc gagcagcttg
      781 attgcgagtt cgatgtttaa gacgcgcgaa gggcacgccg ggttacgcaa atctcagctt
      841 tgatgttcgc gagttgaatg catgcacccg gtcgctaccc cgacgtgtcg gggttcttta
      901 ccgaagcttt tcacggtcgt gctactgccc cgctttgacg cggcgccgaa gctcctcgct
      961 tgccgccggc tgtctgtagc aggctcatca atcccatgta accgtaaccg aaacaaaaca
     1021 acagcagaaa cgcaatcggt ccccacatgt gcattcgcaa tgcgtaagcg atcgcgagca
     1081 caaaatagaa cgcgaaactc aattcgagca gcggcagcca gccgcgcttg cgcttgtatt
     1141 tcttctgctt ccacgattcg tcatgcgttt tttcgacgcg atacttcggc gtgcgcacaa
     1201 aatctgattt gacaccggcc agcgcttcga tcaccgcgcg cgcgttcgaa aacgccagcc
     1261 cgatgccgag gcccattacc agcggcaggt gcaacaaacg cgagccgcgc tgcttgtcga
     1321 gataccacac cgccgatcca taaaagagaa ccaccgacac ggttgaaaag aacagcaacg
     1381 gcacatccaa caacatgagt tgatgcaagc cctgattgta acgaaccaac agcagcggaa
     1441 actgcaggaa gctcgcgacg atcatcagcg gataactgat gttgccggtc aagcgaaaaa
     1501 acatttcgag tttcacgcgc attggcagag gcgcgtacca gattcgcctg tagagcttga
     1561 accaaacttg cagcacacct ttcgcccaac gacgctgctg agccttgaag gcgttaatat
     1621 caactggaat ctccgccggc gcctcttcgt ccagcaggta aacaaatcgc cagcccatca
     1681 actgcgcgcg gaaacttaag tcggtgtctt cggtaagcgt gtcgtgctgc cagccgccgc
     1741 tcatctcaat cgcttcgcgt cgccaaattc ctgcggtgcc gttgaagttg aaaaagttgc
     1801 cgctgcggtt gcgtgtggtc tgctccacca cgaagtggcc gtcgagcatg attgtttgca
     1861 gccgcgtcaa aaggttatac gaaccgttga tgtgcgccca gcgcatctgt gcgcaaccga
     1921 cgatcggatc ggtgaagtag ttgatcagct tgcgcagaaa atccggcttc ggcacaaagt
     1981 cggcatcaaa gatcgcaatc agttcgcctt tcgctgtccg cattccattc tcgagcgcgc
     2041 cggctttgaa gcctgtgcga tcgtcgcgac ggatgtagtg aatatcgaaa ccttcgcgtg
     2101 cgtacttctc aaccgtcgcg tacgcgatgc tcaccgtttc atccgtcgag tcatcgagca
     2161 cctgaatctc gaaacgatcg cgcgggtaat caatctcagt cactgcctga accaaacgtt
     2221 cgacgacata catctcattg aatagcggaa gctgcaccgt aatggtcggc aactggcttt
     2281 cagcaaatgc gattttcggt ttaggaggaa acttgcgata gcgccagaac tcagtgacct
     2341 gcttaacgcg atacatgccg tagattgcga ggatggtcag gatgccgaag taaacaatca
     2401 gcacggtcca gtcaaacgca tcgagctggt agagcgagct gatgttgccc gccgtcttgt
     2461 cataccaatc gcagaacccg ggagagtcaa cacagagatt gcccgtgagt ggctgtggat
     2521 ctatcgcaag tatcgctagc atttcgatct cgtggtggcg gaagtctccg ttgttagttc
     2581 gaatcgggcg gagaattcta acgcaccgct acgagggtct caaagttggt tgcttctctt
     2641 cgcaccttcg gagggtcttc gcgactctgc gtgaaatggc aatttcgtgg accatcgctc
     2701 acgagaaatg caaggacttc tgggcacggc gagatcgttc agattgaaag tgggcccgcc
     2761 aggatgacct tccctttttg accgcttcag cgagcggttc agcag
//
LOCUS       DASZZE010000415         2247 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_255969, whole genome shotgun sequence.
ACCESSION   DASZZE010000415 DASZZE010000000
VERSION     DASZZE010000415.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2247)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2247)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2247
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_255969"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..551
                     /locus_tag="VHD88_08020"
     CDS             <1..551
                     /locus_tag="VHD88_08020"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0016018 - cyclosporin A binding [Evidence
                     IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HVS21781.1"
                     /translation="RRRAVALLKANGVGDFSNRIGTVKTRNTEADYQRAIARIGKHVT
                     ATVETSKGFFTIEFLPEDAPLTVDNFITLARKGFFNGQMIPRVVPNFVIQAGDPRGDA
                     NGGPGYQIRCEINEVPYERGAVGMALSGKDTGGSQWFVTHSPQPHLDGGYTVFGRVIS
                     GMEVVDSIARGDVIRRVIVNER"
     gene            622..>2247
                     /locus_tag="VHD88_08025"
     CDS             622..>2247
                     /locus_tag="VHD88_08025"
                     /inference="COORDINATES: protein motif:HMM:NF013592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M1 family aminopeptidase"
                     /protein_id="HVS21782.1"
                     /translation="MTSFLSDPRAHARGYTLSRLRRSYTVTSVALLLAGLLALVVSAG
                     NQTRQPLLPEKRLRYQIKLALDFENRTYTGFERVRFVNRGDHPVSTLYFHLYSNVRVP
                     GYAPPAAPAKTEPGQLTSDEPRLEISEVRNASDGAALMFDLDDLETTMRINLREPVAP
                     NASTEIEIRFKGSVPEIDPEETGLVTHVMQQVSAAIRSTRELRRPRDTNSRCRGVILL
                     GSSYPVLAARNGDDWFRKVELSIGDTAMAEVADYDVTVEAPRDVAVYTSVAAQAVTQK
                     EELSSTSFAADNLRDFAILTGRNLRLEQRSIGDITIRSIFRPEHEVVARRVLNIAADA
                     VRIYVERLGPLPMKTVSIVDAPLVATLGSAEFAGLSAIASAFYLDFDSPTMRNMPDVI
                     REQRASVEDSLEWTVAHVVAHQWWGVTVGNDPAREPVLDEALANWSALLYYRETHGEQ
                     QAAIALDEQLRGVYKLYRTFGGEDMEASRAAREYRNSFQYAAIVTSKGALMFEALRKL
                     LGDEKFFASLRGYYGANQLEVADMDDLRGSFVAE"
BASE COUNT          447 a          637 c          691 g          472 t
ORIGIN      
        1 ttcggcgccg tgcggttgcg ctgttgaaag cgaatggcgt cggcgacttt tcgaatcgca
       61 tcggcacggt gaagacgcgc aacacagaag ccgactatca acgcgctatt gcgcgtatag
      121 gcaagcacgt gactgcaacg gtggaaacct cgaagggttt tttcactatt gaattcctgc
      181 cggaagatgc gccgctaacg gttgataatt tcatcacgct ggcgcgcaag ggcttcttca
      241 acggccagat gattccgcgc gtcgtgccga attttgtgat tcaggcgggg gatccgcgcg
      301 gtgacgcgaa cggtgggccg ggttatcaga ttcgctgcga gatcaacgaa gtaccttacg
      361 agcgcggcgc ggttggaatg gctttgtcgg gcaaagacac gggcggatcg cagtggttcg
      421 tgacgcattc gccgcagccg catctcgacg gtggctacac agtttttggg cgcgttattt
      481 cggggatgga agttgtggat agcatcgcgc gtggcgatgt cattcgcagg gtgattgtaa
      541 atgaacggta gattgaacca gagaggcgtt cggccggcaa aacctcaacg tttcatttct
      601 gccgcccgct tcgcgggctc gttgacttca tttctgtccg atccccgggc tcacgcccgg
      661 ggctacactc tctcgcgcct gcggcgctcg tacacagtta cgtccgtcgc tctgctcctg
      721 gccggactgc ttgctttagt cgtcagtgcc ggcaatcaaa cgcgccaacc tttgctaccg
      781 gaaaagcgcc ttcgctatca aatcaagctc gcgctcgatt tcgagaatcg cacctacacc
      841 ggctttgagc gtgtgcgctt cgtaaatcgc ggcgatcatc cggtgtcaac tctgtacttt
      901 catctctact cgaacgtgcg cgtgccgggt tacgcgccgc ctgccgcgcc ggccaagact
      961 gaacccggcc agttaacttc ggacgagccg cgtttggaaa tcagcgaagt gcgaaacgcg
     1021 agcgatggcg cggccctgat gtttgacctc gacgatctgg aaacaactat gcgcatcaac
     1081 ctgcgcgagc ccgttgcgcc gaacgcgtcc acagagatcg agattaggtt caaaggcagc
     1141 gtgccggaga tcgatccaga agaaaccgga ctggtgacgc acgtcatgca gcaggtcagc
     1201 gccgcaattc gcagcacgcg cgagctgcgc cgtccgcgcg acacgaactc tcgctgtcgc
     1261 ggagtgattc tgctcggctc gtcttatcct gtgctggcgg cgcgaaatgg cgacgattgg
     1321 tttcgcaagg ttgaattaag catcggcgac acggcgatgg ctgaagtggc cgattacgac
     1381 gtgaccgtcg aggcaccgcg tgatgtcgcc gtctacactt ccgtcgccgc gcaggctgtg
     1441 acgcagaaag aagaactgtc ctcaactagt ttcgccgctg ataacttgcg cgactttgcc
     1501 attctcaccg gtcgtaatct gcgcttagaa cagcgcagca tcggagacat cacgattcgc
     1561 tcaatcttca gaccagaaca cgaggtagtg gcgcgacgcg tgctcaacat cgccgcggac
     1621 gctgtgcgta tctacgtcga acgacttggc cctttgccga tgaagacggt gagcattgtt
     1681 gatgcgccgc tggtcgcgac acttggcagc gcggagttcg ccggtctgag cgcgattgcc
     1741 agcgcgttct atctggactt tgattcgccg acgatgcgca acatgccgga cgtgattcgc
     1801 gaacagcgcg cgtcggtcga agacagtctg gaatggaccg tagcgcacgt cgtcgcgcat
     1861 caatggtggg gcgtgactgt cggcaacgat ccggcgcgcg aaccagtcct ggacgaggcg
     1921 ctggcaaact ggtccgcgtt gctttattac cgtgaaacgc acggtgaaca gcaggccgcg
     1981 attgctttgg atgagcaact gcgcggtgtt tacaaactct atcgcacgtt cggcggcgaa
     2041 gacatggaag ccagccgcgc cgcgcgcgag tatcgcaact cgttccaata cgcggcgatt
     2101 gtgacgagca aaggcgcgct gatgttcgaa gctttgcgaa agcttctggg tgacgagaag
     2161 ttctttgcgt cgttgcgcgg atactacggc gctaaccagc ttgaagtcgc ggacatggac
     2221 gacctgcggg gctcgttcgt cgcggaa
//
LOCUS       DASZZE010000416         2005 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_256008, whole genome shotgun sequence.
ACCESSION   DASZZE010000416 DASZZE010000000
VERSION     DASZZE010000416.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2005)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2005)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2005
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256008"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..729)
                     /locus_tag="VHD88_08030"
     CDS             complement(<1..729)
                     /locus_tag="VHD88_08030"
                     /EC_number="2.1.3.9"
                     /inference="COORDINATES: protein motif:HMM:NF003384.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_function: GO:0043857 - N-acetylornithine
                     carbamoyltransferase activity [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylornithine carbamoyltransferase"
                     /protein_id="HVS21783.1"
                     /translation="MPPPLGTVQNFLTTADLTRADLDQLIEAAIRFKHRDDQSKPLAG
                     RSLALIFFNPSLRTRASMQIGVYELGGNAVVLEPGGTSWTLEHREGAVMDVDKTEHIA
                     EFVRVLGRYCVAIGVRTFAVLKNWEEERTDPILNSFAKYADVPIINLESAMHHPCQAL
                     ADMMTIREKLGEGRKKVLLTWAWHPKPLPMAVPNSFALSAAQIGHDLIIAHPRGYDLD
                     DELMEEIRRQAAGAGGRITIEHDVE"
     gene            complement(876..>2005)
                     /locus_tag="VHD88_08035"
     CDS             complement(876..>2005)
                     /locus_tag="VHD88_08035"
                     /inference="COORDINATES: protein motif:HMM:NF002325.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HVS21784.1"
                     /translation="TYKKMPLVAERGEGVWIYASNGQRYLDLYGGHAVAGTGHCHPHV
                     VAAIREQTEKLLFYSNLVYSEPRARAAEKLVSIAPALLTKAFFCNSGTEANENAMRMA
                     RMATGRENIITFSGGFHGRTADAISATFLGEYREIGKPNVPGHLQAEFGDIDSVRALA
                     DDSVAAIMLEPIQSMAGVRMTEPSFYRALRELCDERDVVLIYDEVQTGVGRTGEWFFA
                     GSEASDGVVPDIITLAKALGSGIPVGACLVTEKIASHIKENDLGTTFGGGMIAMAAVT
                     ATLEAIENDRMLANVREVESYLRDRLKEIEQIVNVRGRGFLLGLEFTDKAKPIHEALL
                     DRRIITGTSSDPKVLRLLPPLCLGKEEIDLFIEKLNGIVSG"
BASE COUNT          431 a          636 c          498 g          440 t
ORIGIN      
        1 ttcaacgtcg tgctcaatcg tgatcctgcc tcctgcccct gccgcctgcc tcctgatctc
       61 ctccatcaac tcatcatcga gatcgtatcc gcgcggatga gcgatgatca gatcatggcc
      121 tatttgtgca gcgctcaacg caaagctgtt cggcacggcc atcggcagag gcttcggatg
      181 ccacgcccac gtcagcagaa cttttttgcg accttcgccg agcttttctc ggatcgtcat
      241 catgtcggcc agcgcctgac atggatgatg catcgccgat tcgagattga taatcggaac
      301 gtccgcatac ttcgcaaacg aattcaggat cggatcggtc cgctcttctt cccagttctt
      361 cagtaccgca aaagtgcgca cgccaatcgc tacgcaataa cgtcccagca cgcgcacaaa
      421 ctcggcgatg tgctcagtct tgtcaacgtc catcaccgcg ccttcgcgat gctccaaagt
      481 ccaactcgtc ccgccgggct cgagcacaac ggcgttgcca cccagttcgt aaactccgat
      541 ttgcatcgac gctcgcgtac gcaaactagg attgaaaaag atcagcgcca acgagcgacc
      601 agccagaggc ttcgattgat cgtcgcgatg cttgaaccga atggcggcct cgatcagttg
      661 atcaagatcc gcgcgcgtaa gatcggctgt agtcagaaag ttctgcaccg tacccaaagg
      721 cgggggcaag ccgcccttcc caacctgaga gactttcaga cttggccgtt ttcttccatc
      781 cttgaaagct ctttcaattc agtgaaaccc cctcaagacg aagcagctca gggtcaggaa
      841 ggcgggcttg cccccgcttc cttcattgga tttgttcacc cggaaacaat cccattcagc
      901 ttttcgatga acagatcaat ttcttccttt cccaaacaca gcggcggcaa gagcctcagc
      961 accttcggat cgctcgacgt gccggtgata atgcggcgat cgagcagcgc ttcgtgaatc
     1021 ggtttcgcct tgtccgtaaa ttcaaggcca agcagaaacc ctcgaccgcg cacgttgacg
     1081 atctgctcga tctctttcaa acggtcacgc agataactct caacttcacg aacattcgct
     1141 agcatcctgt cgttctcaat cgcttcaagc gtcgccgtca ccgcggccat cgcgatcatt
     1201 ccgcctccga acgtcgtgcc cagatcgttt tctttgatat gcgaagcgat cttttcggtt
     1261 accaggcaag cgccgacggg aatgccgctg ccgagcgctt tcgccagcgt gatgatgtct
     1321 ggaacaactc cgtcactcgc ctcgctgccg gcgaagaacc attcgccagt gcggccgacg
     1381 cctgtttgca cttcgtcgta gatcaaaacg acgtcgcgct cgtcgcacaa ttcgcgcagt
     1441 gcccgataga acgaaggctc ggtcatgcgc acaccggcca tcgattgaat tggctcaagc
     1501 atgatcgccg cgacagaatc gtccgccaac gctcgcaccg aatcgatatc accgaattcg
     1561 gcttgcagat gacccggcac attcggcttc ccaatttcgc gatactcgcc tagaaaggtc
     1621 gcgctgatcg cgtccgcggt gcgaccgtga aacccaccgc tgaaagtgat gatgttctcg
     1681 cggcccgtcg ccatccgcgc catgcgcatc gcgttctcgt tcgcttccgt gcctgagttg
     1741 cagaagaacg ctttagttag taacgccggc gcaattgaca ctagtttctc tgccgcgcgc
     1801 gcgcgaggtt cggaatagac gagattcgaa tagaaaagaa gtttttcggt ttgctcacga
     1861 atcgcggcaa ctacgtgcgg atgacaatgc cccgttccgg cgacagcatg cccgccataa
     1921 agatccagat agcgctggcc attgctcgca tagatccaga cgccctcgcc gcgctcggcg
     1981 accaaaggca tcttcttgta ggtcg
//
LOCUS       DASZZE010000417         2394 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_325221, whole genome shotgun sequence.
ACCESSION   DASZZE010000417 DASZZE010000000
VERSION     DASZZE010000417.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2394)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2394)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2394
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_325221"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            263..493
                     /locus_tag="VHD88_08040"
     CDS             263..493
                     /locus_tag="VHD88_08040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21785.1"
                     /translation="MREPSYYQGYFDLKSGRVLMQYFGYLRRNPNDTPDPDYTGYDFW
                     LTKLNQFNGNFINAEMVKAFITSIEYRQRFGP"
     gene            763..2163
                     /gene="fumC"
                     /locus_tag="VHD88_08045"
     CDS             763..2163
                     /gene="fumC"
                     /locus_tag="VHD88_08045"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF008909.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004333 - fumarate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HVS21786.1"
                     /translation="MSQAVKQKTRIETDSMGEIEVPADKYWGAQTQRSLLHFNIGFDV
                     MPREMIRAFGILKKACALVNQDLDKLSPDKTKLIVQACDEVIAGKLDEHFPLRVWQTG
                     SGTQTNMNANEVISNRAIELAGGVLGSKKPIHPNDDVNMSQSSNDTFPTAMHIAAAEQ
                     MNKLIPAIQSVHDAIDAKAKEFADVVKIGRTHLQDATPLTVGQEMSGWASLLSRDIDR
                     MKDTLSGLYDLAIGGTAVGTGLNAHPEFGERAAKKIAELTGLPFKSHPNKFAALSAHD
                     EIVFCSGALKTLAASLMKIANDIRWLASGPRCGLGELIIPENEPGSSIMPGKVNPTQS
                     EAMTMVSVQVMGNDAAIGFAGSQGNFELNVFKPVMIHNLLHSIRLIHDACHGFVEYCI
                     AGMTINREQIDEYLRHSLMLVTALNPHIGYDNSAKIAKHAHQTKISLRESAIELGLLS
                     GEEFDRLVKPEEMTHP"
BASE COUNT          582 a          686 c          633 g          493 t
ORIGIN      
        1 caaaacttcc gccggcgctg cgcggcggtc cgccgaaact aacgggtcag gaaaacaatc
       61 cgccgcaact aaatcttgat gacggcgaca ttccgcgcgc cgtgccgccg atcaggaaac
      121 cggtgaagcc ttagttatta acgtcgaatc tcatcagcca aaccaagtgc ggaggcaacg
      181 attcccgaaa tgattaacca gaaagcgccc tcttagcgct gatgacttcg ggaacgtcag
      241 cgtcagcatc tttccagact ttgtgcgcga accttcttac taccagggtt atttcgatct
      301 caagagtggg cgtgtgctga tgcagtactt cggatatctg cgacgcaatc cgaacgacac
      361 gcccgacccg gactatacgg gttatgattt ctggctgacg aagctcaacc aattcaacgg
      421 caactttatc aacgccgaga tggtgaaagc gttcatcacc tcgatcgaat atagacaacg
      481 ctttggcccg tgagactccg agcgattcct cttccaatcg gaagtctgaa actcgaaacc
      541 ccaagtcgcc ggcttcgcga tccaccgtgc tgcgcctgaa actggttgga gccaacccag
      601 tctgcgcaag tggaaggacg agacctactg ccgggcaaga gcaactgctt tatcggcgac
      661 gatcccacgt ttgccgtctc gccgtctgat tagaccccac gttgatgtac aatcccattg
      721 cgtcgatttt caaacccaag cccttaagga cttagtctgc cgatgtcaca agcagtaaag
      781 cagaagacac gcatcgagac cgattcgatg ggcgagatcg aagtgcccgc cgataagtat
      841 tggggcgcgc agacgcaacg atcgctgctc cacttcaaca tcggttttga cgtgatgccg
      901 cgcgagatga ttcgcgcgtt cggcatcctc aagaaggcgt gcgcgctggt gaatcaggat
      961 ctcgacaaat tatcgccgga caaaactaaa ttgatcgtgc aggcctgcga tgaagtgatc
     1021 gcaggcaagc tcgacgagca ttttccgctg cgcgtctggc agaccggcag cggcacccag
     1081 accaacatga acgcgaacga agtaatttcg aatcgcgcga tcgaattggc tggtggcgtt
     1141 ctcggcagca agaaaccgat ccatcccaac gacgatgtga acatgtcgca atcgtcgaac
     1201 gacacgttcc cgaccgcgat gcacatcgcc gctgccgagc agatgaacaa gctgatccct
     1261 gccattcaga gcgttcatga cgcgatcgac gcgaaagcga aagagttcgc agacgtagtt
     1321 aagattggcc gcacgcatct tcaggacgcc actccgttaa ccgttggcca ggagatgtct
     1381 ggctgggcaa gcctgctgtc gcgcgacatc gaccggatga aagacacgct ttcaggactt
     1441 tacgatctcg caatcggtgg caccgctgtt ggcacgggcc ttaatgctca tccggaattt
     1501 ggcgaacgcg ctgcgaaaaa gatcgctgaa ctaaccggct tgccgttcaa atcgcatccg
     1561 aacaaattcg ctgcactctc ggctcacgat gaaattgttt tctgtagcgg cgcgttgaaa
     1621 actctggccg cgtcgctgat gaagattgcc aacgacattc gctggctggc ttcggggccg
     1681 cgctgcggtt taggtgagtt gatcatccca gaaaacgaac ccggctcgtc aatcatgccc
     1741 ggcaaggtca accccactca gagtgaagcg atgaccatgg tctccgtgca ggtgatgggc
     1801 aatgacgcgg caatcggttt cgccggctcg caaggcaact ttgaattgaa cgttttcaag
     1861 ccggtgatga ttcacaatct gctgcactcg atccggctga ttcacgatgc gtgtcacggc
     1921 tttgtcgagt actgcatcgc cggcatgacg atcaatcgcg agcagattga cgagtacttg
     1981 cgacactctc tgatgctggt tacggcgttg aatccgcaca ttggttatga caactcagca
     2041 aagatcgcga agcacgcgca ccagacgaag atcagcctgc gcgagtcggc gattgaatta
     2101 ggattattga gcggcgaaga gtttgatcgg ctggtcaaac ccgaggagat gacgcacccg
     2161 taaattgtag ggacagggct tgtccctgcc cgcttgtttt cgccgtcggg aagccacaag
     2221 ggctgcccct acaatttcac acatgccaga tcgcaacgac cgcgtacaag aaaacactcc
     2281 cggccctttc tacgttgaca gcacgtgcat cgattgcgac gtgtgtcgcg acacagcacc
     2341 caacaacttc acgcgctctt tcaagcacgc ctattcctac gtcagcaaac aacc
//
LOCUS       DASZZE010000418         4140 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_274446, whole genome shotgun sequence.
ACCESSION   DASZZE010000418 DASZZE010000000
VERSION     DASZZE010000418.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4140)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4140)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4140
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_274446"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1243)
                     /gene="lnt"
                     /locus_tag="VHD88_08050"
     CDS             complement(<1..1243)
                     /gene="lnt"
                     /locus_tag="VHD88_08050"
                     /inference="COORDINATES: protein motif:HMM:TIGR00546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006497 - protein lipidation [Evidence
                     IEA];
                     GO_process: GO:0042158 - lipoprotein biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HVS21787.1"
                     /translation="MHDAVAAQAPNRKLPLQSLTRLRANLPTLAEASLAIGSALLLVL
                     SFPDFDLWWLAWIGMVPLLMAVARTRKTGQAFLLGLLWGVIFFYGTCWWLTFSMIHYG
                     HLHLWLAYPLLLLPVLLVALFPALFCALLERVASRFGPAALFTAPLLWVSFEFGRYAV
                     TGQLWNALGYSQAFHPMLIQSARWGGVYAVGFLVVAANAAVAFALIRRRIVATGLSLV
                     ILMITALALAGALVQFISEPILSNASNRFVVAVQPNVPMDGVDDPAMMQHLLNRHLEL
                     SAQGLRNTPRDASSTRLVIWPESPMSFSYSRDSQLRDVVARFARDNYTSVMLNSLEPG
                     PNGGEYNSAILVNEAGQKVAQYDKIRLMPFGEYVPLPHWLPGASSVRGIVGDFTPGSS
                     YTLMPLGDLRAGVFICIEAAHP"
     gene            complement(1930..3720)
                     /locus_tag="VHD88_08055"
     CDS             complement(1930..3720)
                     /locus_tag="VHD88_08055"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HVS21788.1"
                     /translation="MTRRILAIFLAIAALACSLSLTSREATAQTPTATEAVLVLPFEN
                     ASDHPEYNWIGESFADSLSALLSKPGLVVVTSDERAVAYQRLRLPLTVLPSRATAIKI
                     ARELKASMIVIGTYNVTIPTPSGDKPKTTIEKPLANIVGEARVVRVNEGRMAGDIFDG
                     AWAPRVYDFGGTVTDLQKMHGELAYQILFQRDKALSFSRNNLVQEATKVPPQAFEAFM
                     KGVLTAERDPTRAIYFKNAMRLYAKENGGAVYPQAAFELGQFYLGQNQWKEAAEYFAM
                     LQKKEPHYGEAQFYAGLAYWKLDEIQKALAVLVPLANERAMPLVGVYNNAGAVSVEAA
                     RSEKKREEKTSLLSQGITLLSRAVDSSPDDTMVLFNYACALFLAEKYSEAADKLQKVI
                     AGDQRDGQAYFLLAKAQERVGQADAANAADNLARKNLPGYAKWQTEWQKSRTVPAIVL
                     RSRDVLNQVDISDLARHKLVEDARASNTEDALNKIRDLYEKGQDDEALVEIQKLFNSE
                     PTNAEAFLLRGRINQRRGDQEAAIAALKTAIFWEPPPKMIDAHILLGRIFLERGDLGE
                     ARKYAASAINIDPNNQEAIALQRQVTMGRP"
     gene            complement(3892..>4140)
                     /locus_tag="VHD88_08060"
     CDS             complement(3892..>4140)
                     /locus_tag="VHD88_08060"
                     /inference="COORDINATES: protein motif:HMM:NF016836.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HVS21789.1"
                     /translation="GGETAGPANADDAAIQAQIEKTFAADATLSKLDVSTLVENGKVT
                     VVGSVRSSDLKQRVEKAVRSVKGVVSVDNQLIITEATP"
BASE COUNT          923 a         1162 c         1163 g          892 t
ORIGIN      
        1 acggatgcgc tgcttcgatg caaataaaaa ccccggcgcg caagtcgccg aggggcatca
       61 gcgtatacga actgccgggc gtgaaatcgc cgacgatccc gcgtaccgaa cttgcgcccg
      121 gaagccaatg gggcagcggc acgtactcgc caaacggcat caggcggatt ttatcatact
      181 gcgccacttt ctgacccgct tcatttacca gaatcgcaga attatattcg ccaccgttcg
      241 gaccgggctc gagcgaatta agcatgaccg aagtgtaatt gtcgcgagcg aacctggcga
      301 cgacgtcccg cagttgcgaa tcgcgcgagt agctgaagct catcggagat tcaggccaga
      361 tgacgagacg cgtagaactg gcgtcacggg gggtattacg caacccttgc gcgctgagct
      421 caagatggcg attcaagagg tgctgcatca tcgctggatc gtcaactccg tccattggga
      481 catttggctg gaccgccact acgaacctgt tcgacgcatt actcaatatc ggttcactga
      541 tgaattgaac aagggctcca gccaaagcaa gagcggttat catcagaatg actagcgaaa
      601 gacccgtggc aactatacgg cggcggatca gggcgaatgc gactgcggca tttgctgcca
      661 ccaccagaaa accaaccgcg taaacccccc cccatcgtgc cgactggatc agcatcggat
      721 gaaaggcttg cgaatatccg agcgcgttcc agagctggcc cgtgacagcg tagcgtccga
      781 attcaaagga aacccaaagg agcggtgcgg tgaacaaggc cgccgggccg aagcgcgaag
      841 caacgcgctc cagtagggca cagaacagcg cggggaagag cgcgaccagc aggacaggaa
      901 gcaacaggag tggataggca agccacaaat gcaaatgccc gtagtggatc atcgagaacg
      961 tgagccacca gcacgtccca taaaagaaga tgacgcccca caacaagcct aacaggaacg
     1021 cctgaccggt tttgcgtgtt cgcgccaccg ccatcagtag cggaaccatc ccaatccacg
     1081 ccaaccacca caagtcaaaa tctggaaacg agagaacgag cagaagcgcg gatcctattg
     1141 ctagagaagc ttcggcaagt gtaggaaggt tggcgcgaag gcgcgtcaac gattgaaggg
     1201 gcagcttgcg attcggcgcc tgcgcggcga ccgcgtcgtg catgcgtcga agtctagcag
     1261 agtagcgatt accagtcagc tatcagcgct cagcagtcgg cattcagcgt tcggaagtac
     1321 agcctttttt ggaagcatca gctcatacac cgcaaacgat tcctggaact gaaattaatt
     1381 agctggagaa attttctgga aggtggttgt gaggttcgaa aaccatctca attcagtgct
     1441 gcaacgacaa aaaccgtcac tgtcaaagtg acaaattccg tcgttctgac tgctcgttga
     1501 cagagcatga ccgactcttt cggttgccac acttgtcatt ttgcgcgcgc tttgattgct
     1561 cgaagtcagc tccggcgcgc attccagaat cagattcgaa gagaagagag ccgtaaatgc
     1621 gggagaaccc ggccatttct gaccgggttc caattcgggg ggatttgact gaaggatcgc
     1681 tcggcgggcg gctggcgcag cggcatgcgg cgctcagaga agtgatggcg gcgggggcac
     1741 gtttcattgc gtgctagccg tctttgtcct cagcacttcg cgtgccacga gcttcagatt
     1801 tcggaatgtg gatttcggat tgaggattcg gagcgctggc gagaagaccg gcttatggct
     1861 cgctttgttc atgtctgcga attgggatga gcgctgcgcg ctggcgggca ggatgcccgc
     1921 gctcccagct tacggtcggc ccatggtgac ttgtcgctgc agcgcgattg cttcctgatt
     1981 gttgggatcg atgttgatgg cgctggctgc gtatttcctg gcttcgccaa gatcaccgcg
     2041 ctcgagaaag attctgccga gcaggatgtg cgcatcaatc atctttggag gcggctccca
     2101 aaaaattgcg gtcttcaaag ccgcgatggc tgcctcctga tcgccacgtc gctggttaat
     2161 tctgccgcgg agcagaaatg cctcagcgtt tgtcggttcg ctgttgaaga gcttttgaat
     2221 ctcaacaagc gcttcgtcgt cctgaccctt ttcgtaaaga tcgcgaattt tgttgagcgc
     2281 gtcttcggtg ttgctggcgc gagcgtcttc caccagtttg tggcgcgcca ggtctgagat
     2341 gtcaacttga ttgagaacgt cacgtgagcg caaaacaatc gctgggacgg tccgcgactt
     2401 ctgccattcg gtttgccatt tcgcatagcc cggcaagttt tttcgagcca gattgtccgc
     2461 ggcatttgcg gcatccgcct ggcctactcg ttcctgagct ttagccagta gaaaataggc
     2521 ctggccgtct ctctgatcgc cggcgattac tttctgaagt ttgtcggcgg cttcagagta
     2581 tttttccgcg agaaacagcg cacacgcata gttgaataga accatcgtgt cgtccggcga
     2641 agaatcgacg gcgcgtgaca gcaacgtaat cccctgagac agcagacttg ttttctcttc
     2701 ccgtttcttt tcgctgcgcg ctgcttcgac tgagacggcg cccgcgttgt tatagacgcc
     2761 aaccagcggc atggctcttt cgttcgctag cggaacaagc acggcgagcg ctttctggat
     2821 ctcgtcaagc ttccaatacg caaggcccgc atagaactgc gcctcgccgt agtgcggctc
     2881 tttcttctgc agcatcgcga agtactcggc cgcttccttc cattggttct ggcccagata
     2941 gaactgaccc aactcgaacg ctgcctgcgg atataccgcg ccgccattct ctttggcgta
     3001 aagccgcatc gcgttcttga agtaaatcgc tcgcgtcgga tcgcgttccg ccgtcaacac
     3061 gcctttcatg aaagcttcga aggcctgagg tggtacctta gtcgcttcct gcaccagatt
     3121 atttctggaa aacgaaagcg ccttatcgcg ctgaaagaga atctggtaag caagctcgcc
     3181 gtgcatcttc tgcaagtcgg tgaccgtccc gccaaaatca taaacgcgcg gcgcccacgc
     3241 tccgtcaaaa atgtcgccag ccatgcggcc ttcgttcaca cgaacgacgc gcgcttcgcc
     3301 gacgatgttg gccagaggct tttcgatcgt agtctttggc ttgtcaccgg acggcgtcgg
     3361 gattgtcacg ttgtaagtac caatgacgat catcgaagcc ttcaattcgc gcgcaatctt
     3421 gatggctgtg gcgcgcgacg gcagaactgt cagcggcaaa cgcagacgtt gatacgcaac
     3481 ggcccgctcg tcgctggtaa cgacgaccaa tcccggcttg ctcagcaagg ccgacagcga
     3541 atcggcaaag ctctcgccga tccagttgta ctccggatgg tccgatgcat tctcgaaagg
     3601 aagcaccaga acggcctcag ttgccgttgg agtctgggcc gtagcctcgc gtgacgtgag
     3661 tgacagagag caagccagcg cggctattgc taagaaaatc gccaatattc ttcgagtcat
     3721 tatgaaattc cagatcaata aagtaattcg ctaacgaaaa tttcgatgcg attatcatag
     3781 cagcggttgg acgcgagcgc atccttcgga ggccggggca cagacttcag tctgtgatcc
     3841 ggcgctggaa ttgatacgct gacattcaat cacaggctga agtctgcgcc actagggcgt
     3901 ggcctccgtg ataatcaact gattatccac gctgacgacg cccttgactg agcgcacagc
     3961 tttctcaact cgctgcttga ggtcggacga tcgcaccgag ccgacgacgg tcactttgcc
     4021 gttttcgacc agcgtgctca cgtcgagttt cgaaagtgtc gcatctgcgg cgaacgtctt
     4081 ttcgatctgt gcttgaatcg ccgcgtcatc cgcgttcgcc ggcccggcag tttcaccgcc
//
LOCUS       DASZZE010000419         4704 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_274500, whole genome shotgun sequence.
ACCESSION   DASZZE010000419 DASZZE010000000
VERSION     DASZZE010000419.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4704
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_274500"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..583)
                     /locus_tag="VHD88_08065"
     CDS             complement(<1..583)
                     /locus_tag="VHD88_08065"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21790.1"
                     /translation="MNNQNDPTPIVSRLRRDLGTIESYAALIGILIGAGIFKVTSDAW
                     SLTGPSVVLGYAVLMPAILATSIPYAAFISTPLGREPGGEYLHISRTLGGFGIAYIGS
                     WLKIIAYIGAGAYLASALADYIIELSGRRISGEFAHQSLAVGSLLFFYLVHVVGVRWF
                     GRIQVAMCVLLGLSICVLVIPGLFAIHAANYSPF"
     gene            complement(635..1855)
                     /locus_tag="VHD88_08070"
     CDS             complement(635..1855)
                     /locus_tag="VHD88_08070"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HVS21791.1"
                     /translation="MITLKSFDGGEFAAHLALPAGGDGPGIVVLQEIFGVNEYMRQVA
                     DWYAARGFVALVPDLFWRQEPGIQLTDRSEAEWQRAFALYQGLDEAKAVEDSAATVDF
                     LRKHPSCSGRVGAVGFCLGGNLAYLLSVRFRPDCAVGYYGVSIEKTLNEAGNLGSPLM
                     LHIAGRDQYCPPEAQKQIHETLDSIPLVTIHDYPEQDHAFGRPGGEHYDAAAAELANL
                     RTLEFFVRNLAGEGLASAQKSLSDRWDEHVKYEFATRDTEDTLKTMVPDAYVNHVPVL
                     TGGVGHEQLREFYSRRFIPQMPPDTSMTPVSRTIGVDRVVDEMVFEFTHTIKMDWMLP
                     RLEPTGKHVKIPLVVIVHFRDGKLAHEHIYWDQASVLVQLGLIETANLPVAGVETAEK
                     VLDPSLPANKLMDR"
     gene            complement(1978..>4704)
                     /locus_tag="VHD88_08075"
     CDS             complement(1978..>4704)
                     /locus_tag="VHD88_08075"
                     /inference="COORDINATES: protein motif:HMM:NF024754.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HVS21792.1"
                     /translation="ANLFIVGDRKQSIYGFRGADVDVFREMSTEIEAAGGTQVPLHLN
                     FRSQKPLIDSLNFLFERIFHARAEIPVEQLGQLGYVGHEPGIAERGAEDQSPLVELLV
                     SVLPDAARNSQDESDDDSADDQNQPNVRERDAEQLVERIGSLVDSGHNYGDIAILFRA
                     LTGVWVYESALRRAGIPYLTVQGKGFYQREEITDLIQLLRFLDNTTDELALAAVLRSP
                     LCGISDNALLALRCGPKTGGDQEPERLHRRHLWQALRSQSEVQFIDDEERAELDRASA
                     FLEVMVRRRNRCGIAELLRQAVTETEFMTVIAANFDGAHRIANVEKLFRLAEQFEKTG
                     ANLIRDFVNYVEEFEAVGGRESEGQMDKSSNVVRLMTIHQAKGLEFPVVIIPDLHREP
                     MRRDAPFILDRRKGLSLKVPDGRGQMVRGAFLDELQKRAGWREEFESMRVLYVAATRA
                     EDRLIFSGAVARKSLRNLSATEREHWLAWIWQALELDEHPQSEVKQFGYDVWIDVRID
                     RETKIEPAAIAPASVADATEKAIDVSRPFTELFPLLQPIAPERGQILRRFSVTQLINF
                     QRCARQYYFDRMLRAPGAEELAAWNDAEAPEPPANLTATLKGAVIHRFCETFAVGDDP
                     EERLRASFADLTRQRQAELAGRVFEIDTEQAVRDLMPLAQNYLASEVFKRVQLSEMST
                     GSDSALRTPHSSGLWSELRFRLRRRLGILTGTIDKLLITPAANGDGFDVEIIDFKTNR
                     FRAKTGEAEKRSRTAVVASTSIGAPRVIESGSQPAQGFFDFESQKAEAATYAPLVSLE
                     EQIDGTARDYQLQMQAYALALRELLPAETKLNSLRATLHFIDPNVEVSVAPTLLEPET
                     CVRAIDDAIFRIASLDGTLDAEAFPPLPATHCRICKFVDLCAPGRDWLSQHR"
BASE COUNT         1043 a         1419 c         1298 g          944 t
ORIGIN      
        1 taaacggcga atagtttgcc gcatggatcg caaacagtcc gggaattacc agcacacaaa
       61 tcgagagacc cagcagtacg cacatggcca cctggatccg gccaaaccag cgcacgccga
      121 ccacgtgcac gagatagaaa aaaagcaggc tgccgacggc gagcgattga tgagcaaact
      181 caccgctgat acgtctgcca ctaagttcga ttatgtaatc agccaacgcg ctggccaagt
      241 acgcgccagc gccgatgtag gcgatgatct tcagccacga gccgatgtag gcaatgccga
      301 acccgccgag cgtgcgcgag atgtgcagat attctccacc cggttcgcgg cccaaaggcg
      361 ttgagatgaa tgccgcataa ggaattgaag tcgcgagaat cgccggcatc aacaccgcgt
      421 aaccgagcac cacgctcggc ccggtgagcg accaggcgtc actggtgact ttgaagatgc
      481 cggcgccaat cagaattcca atcagcgccg catacgattc gatcgtgccg agatcgcggc
      541 ggagacggga gacgatcggt gttgggtcat tttggttgtt catctttaat cgacgagtta
      601 acgcccttgc ctacgcgcgg actactgccc cgcctcaacg atccatcaat ttgttcgccg
      661 gcaaactcgg gtcgagtact ttctcagccg tctcaacgcc cgcaaccgga aggttagccg
      721 tctcaatcag gccaagctga accaacacgg aagcctgatc ccagtagatg tgttcgtgcg
      781 cgagtttgcc gtcgcgaaaa tgaacgatga caaccagcgg gatcttcacg tgtttgccgg
      841 taggctccag cctcggcagc atccagtcca tcttgatcgt gtgcgtgaac tcgaaaacca
      901 tttcgtcaac cacgcgatcg acgccgatcg tgcgcgacac cggcgtcatc gaagtgtccg
      961 gcggcatctg cggaatgaaa cgccttgaat agaactcgcg aagctgctcg tggcccacgc
     1021 cgccggtgag aacgggaacg tgattcacgt aggcatcggg caccatcgtt ttcaaagtgt
     1081 cttcagtatc acgagtggcg aattcgtatt tgacgtgttc atcccaacga tccgacagcg
     1141 acttttgcgc actcgctaaa ccttcgcccg ccagattgcg gacaaagaat tccagcgtgc
     1201 gcagattcgc gagttcggcc gcagcagcat cgtagtgttc gccaccggga cgcccgaacg
     1261 catgatcctg ttccggataa tcgtggatcg tgaccagcgg aattgaatcc agcgtctcgt
     1321 gaatttgctt ctgtgcttcg ggcggacagt actgatctct tccggcaatg tgcagcatca
     1381 acggagagcc aagattgcct gcttcattca gagttttctc gatgctgacg ccgtaataac
     1441 caacggcgca atcaggtctg aaacgaaccg aaagcaagta agcaagattt ccgccgagac
     1501 aaaaaccaac cgcgccgact cgcccgctgc acgatggatg cttgcggaga aaatcaacgg
     1561 tcgcggccga atcctcgact gccttcgctt catcgaggcc ctgataaagc gcgaacgctc
     1621 tctgccattc ggcctccgat ctgtcagtta gctgaatgcc cggctcttgt cgccagaaga
     1681 gatcagggac cagcgcgacg aaaccgcgcg ccgcgtacca gtcggcaacc tggcgcatgt
     1741 attcattgac gccgaaaatt tcctgcaaca cgacgatgcc cggaccatcg ccgcccgcag
     1801 gcaaagcgag gtgggctgca aattctccac catcgaatga tttcagggtg atcatgacgg
     1861 actagttcct ctccatgttc gagcgatgac agggcggcgt ttagagtacc gactttagtc
     1921 gggtttttcc atgcgccgaa agcccgtcta aagtcggtgc tccgaaacga gcgtatgtta
     1981 tcggtgttga ctgagccagt ctcggccggg cgcacacaaa tcaacaaact tgcaaatccg
     2041 acagtgcgtc gcgggcaatg gtgggaaagc ttcggcgtcg agcgtgccgt ctaaagaagc
     2101 aatccgaaag atcgcgtcgt caattgcgcg cacgcaggtt tccggctcaa gtaaggttgg
     2161 cgccacgctg acttcgacat tcggatcgat gaagtgaagc gtggcgcgca gactgttgag
     2221 cttcgtctcg gcgggcagga gttcacgcag cgccagcgcg taagcctgca tctgtaactg
     2281 ataatcgcgc gcggttccgt caatctgttc ttccaaagaa actaagggcg cgtaggtcgc
     2341 ggcctctgcc ttctgcgact cgaaatcaaa aaagccctgc gcgggttgcg atccggattc
     2401 aatcacgcgg ggtgcgccga ttgatgttga ggcgacgacc gccgttcgcg atcgcttttc
     2461 cgcttcgccc gttttcgcgc gaaaccgatt agttttgaag tcgatgatct caacatcaaa
     2521 accatcgccg tttgctgccg gcgttatcag cagcttatcg atcgtgccgg tcagaattcc
     2581 cagacgccgc cgcaaacgaa agcgcagctc gctccacaaa ccggaggagt gtggagtgcg
     2641 gagtgcggag tcggaaccag tcgacatctc cgagagctga acccgtttga atacttcgct
     2701 cgccagatag ttctgcgcca acggcatcaa gtcacgcacg gcttgttccg tgtcgatctc
     2761 gaaaactctg cccgcaagtt ccgcttgtcg ctggcgcgtc aggtcagcaa agctggcccg
     2821 taaacgctct tcaggatcgt cgccaaccgc gaatgtttcg cagaagcgat gaatcaccgc
     2881 gcccttcaac gtggccgtca gattcgcggg cggctcgggc gcttccgcgt cattccaggc
     2941 cgcaagctct tcagcgccgg gcgcgcgcag cattcgatcg aagtaatact gccgagcgca
     3001 acgctgaaag ttgatcaact gcgtcacgct gaagcgacgc agaatctggc cgcgttcagg
     3061 cgcgatcggt tgcagcaagg gaaataattc agtgaacggc cgggaaacat cgatggcttt
     3121 ctccgtcgca tcggcaacgc tcgcgggcgc gatagctgcc ggctcaatct ttgtttcgcg
     3181 gtcgattcgc acgtcaatcc aaacatcata gccaaactgc ttcacttcgc tttgcggatg
     3241 ttcgtccagc tcgagcgctt gccagatcca cgccagccag tgctcgcgct cggtcgcact
     3301 caagttccta agactctttc gcgcgacggc gccggaaaaa atcaaacgat cctcggcgcg
     3361 cgtggcggcc acgtaaagaa cgcgcatgct ttcaaactct tcgcgccagc cggcccgctt
     3421 ttgcagctcg tcaagaaaag cgccgcgaac catctggcca cgcccgtcgg gcaccttcag
     3481 gctcaagcct ttgcgtcggt cgagaatgaa tggcgcgtcg cgtcgcatcg gttcgcgatg
     3541 caaatcggga atgataacca cggggaactc gaggcccttc gcctgatgaa tcgtcatcaa
     3601 gcgcacgacg ttcgacgatt tgtccatctg gccttcgctt tcgcggccgc cgaccgcttc
     3661 gaactcttca acatagttaa cgaagtcgcg gatcaagtta gcgccggttt tttcgaactg
     3721 ttcagccagg cggaaaagtt tttccacgtt agcgatgcga tgcgcgccgt caaagttagc
     3781 cgcgatcacg gtcatgaatt ccgtctccgt aaccgcctga cgcaaaagct cggcgatgcc
     3841 gcatcgattt cgccgccgca ccattacctc gagaaacgct gacgcccgat caagctccgc
     3901 gcgctcttca tcgtcgatga actgaacctc gctttgactg cgcagcgctt gccatagatg
     3961 gcgacggtgc agtctttccg gctcttgatc gccgccagtc ttcggaccgc aacgcagcgc
     4021 cagcagcgcg ttatccgaaa tgccgcaaag cggcgagcgc aacaccgcgg ccagcgccaa
     4081 ttcgtcagtc gtgttgtcga gaaaacgcag cagttggatc agatcagtga tctcctcgcg
     4141 ctggtaaaac ccttttccct gaacggtgag ataaggaatg ccggcgcggc gcagtgcgct
     4201 ctcgtaaacc caaacgcccg tcagcgcgcg gaagaggatc gcgatgtcgc catagttgtg
     4261 gcccgagtca acgagcgatc caatgcgctc gaccaactgc tcggcatcgc gctcacgcac
     4321 gttcggctga ttctgatcgt cggccgaatc atcatctgat tcgtcctgcg aattcctggc
     4381 cgcgtccggc aagacgctta ccagcaactc gaccagcggc gactggtctt ccgcgccgcg
     4441 ctcggcgatg cccggttcgt gaccgacgta acccagttgc cccaactgtt ccacaggaat
     4501 ttccgcgcgc gcgtgaaaga ttcgctcgaa cagaaagttc agcgaatcga tcagaggctt
     4561 ctggctgcga aagttgagat gcagcggaac ttgagtgccg ccggcagctt caatctccgt
     4621 gctcatctcg cgaaagacat caacgtctgc gccgcgaaaa ccgtaaatcg attgcttgcg
     4681 atcgccgacg atgaacagat tcgc
//
LOCUS       DASZZE010000420         2757 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_256126, whole genome shotgun sequence.
ACCESSION   DASZZE010000420 DASZZE010000000
VERSION     DASZZE010000420.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2757)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2757)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2757
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256126"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2474
                     /locus_tag="VHD88_08080"
     CDS             <1..2474
                     /locus_tag="VHD88_08080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21793.1"
                     /translation="QRRRQAFGFNGGGPGSAIYKTVDGGANWKKLTTDLPEGPTGRIG
                     IDIYRSNPNIVYAIIENAKGGVFRSEDRGEHWRKMSDVDSRPMYYSQIHIDPNNDQRI
                     WQLAAPMFVSDDGGKTWATNVVGRIHGDFHTLWIDPKDSNHVLAGSDGGIHQSYDRGR
                     SWDFINTIPLGQFYEVSLDNQKPFWVYGGLQDNGSWAGPNGTLNTEGITNDDWFRVGG
                     GDGFYTVVDTTDPSVMYVESQQGFVARLEVKTGERKSIKPEAPPGEKEYRFDWNSPIV
                     ISPHNNRTIYFAGNRVFRSTDRGNTWTRSDDLSRNEDRDKKPIMGVVPDKNMLSRHDG
                     QETSGQVVTLAESPIKEGLLYAGTDDGNLQISQDGNKTWKNLTGKVRGVPERTYVSRV
                     VPSRFAEGTVYATFDGHRGDDLGTYVFVSNDYGETWKSLKGNLPAGTTCRVIREHPRN
                     QNLLFLGTEFGAYVSFDRGGHWTRMKGNLPLMRVDDIQIHPRDNALVLATHGRSIWVL
                     DDLTPLEKITEGTLSEAVHLFDLAPVTHFRLYNRKADTGHKWFMAPNPPYGAVINYFL
                     KDKPTEDVKITITDRGGKTVRELTGAKESGMGRVVWDLRLPGPEPSPSPGVGGFFGPP
                     IGPRVAPGDYNVKLAVGAKQATGTVRVEEDPRIQIAEADRAKLNEAMMRVYDLMKSGG
                     AVRRSLQSLKTQLTALQNSLKDTPDVPKNVTQAVQTLSDDVTNLQKRWTGVPDTSGSA
                     GPPLPDEPRPLFGQIVTIAFGLDSYTAAPTSDEMLRIDDLAKQLRVLITDVNKVIDEG
                     VPRLNKQMSDAGLQIVNSGKKIPPP"
     gene            complement(2574..>2757)
                     /locus_tag="VHD88_08085"
     CDS             complement(2574..>2757)
                     /locus_tag="VHD88_08085"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HVS21794.1"
                     /translation="VNRINEIDANRETVVHCKMGGRSAKAIEALQRSGFTGRLINLKG
                     GITAWSNEVDPSVPKY"
BASE COUNT          639 a          755 c          803 g          560 t
ORIGIN      
        1 atcaacgtcg gcgccaggca ttcggcttta acggcggtgg tccgggcagc gcgatttaca
       61 aaacggttga cggcggcgct aattggaaaa agctcaccac ggatttgccg gaaggtccga
      121 cgggccgcat cggtatcgac atctatcgca gcaatccgaa catcgtttac gcgatcatcg
      181 aaaacgcgaa gggcggcgtg tttcgctctg aagatcgcgg cgagcactgg cgcaagatga
      241 gcgacgtcga ttcgcgccca atgtactaca gtcagattca tatagatccg aataacgatc
      301 agcgcatctg gcaactggcc gcgccgatgt tcgtatcgga tgacggcggc aagacctggg
      361 ctactaacgt tgtcggccgc attcacggcg actttcacac gttgtggatc gatccaaaag
      421 actcaaacca cgtgctggcc ggatcggatg gcggcattca ccaatcctac gatcggggcc
      481 gctcgtggga cttcatcaac acgattccac tgggccagtt ctacgaagtg tcgctcgaca
      541 accagaaacc gttttgggtt tacggcggct tgcaggacaa cggcagttgg gccgggccga
      601 acggcacgct taacaccgaa ggaataacca acgacgattg gtttcgcgtc ggtggcggcg
      661 atggtttcta tactgtggtg gacacgaccg atccgagcgt catgtacgtc gagtcgcaac
      721 aggggtttgt ggcgcgactc gaagtgaaaa ccggcgagcg caagtccatc aagcccgaag
      781 cgccgccggg cgaaaaagag tatcgctttg actggaactc gccaatcgta atctcgccgc
      841 acaacaaccg cacgatctat ttcgcaggca atcgcgtttt cagatcgacg gaccgcggca
      901 acacctggac gcgcagcgac gatctttcac gcaacgagga tcgggacaaa aagccaatca
      961 tgggcgtcgt gccggataag aatatgcttt cgcgtcacga tggtcaggaa acttccggac
     1021 aagtcgtcac gcttgctgaa tcgccgatca aagaaggttt gctttacgcc ggcaccgacg
     1081 acggcaacct gcaaatctcg caggatggca acaagacctg gaagaatctg actgggaaag
     1141 ttcgcggcgt tccggaacgc acttacgtca gccgcgtcgt gccgtcccga ttcgccgaag
     1201 gaactgttta cgcaactttc gatgggcatc gcggcgacga tctgggcaca tacgttttcg
     1261 tctcaaacga ttatggcgaa acgtggaaat cgctaaaggg gaacttaccg gcaggcacga
     1321 cgtgtcgagt gattcgcgag catccgcgca atcaaaacct tttgtttttg ggaactgagt
     1381 tcggcgctta cgtttcgttc gatcgcggcg ggcactggac gcgcatgaaa ggcaacctgc
     1441 cgttgatgcg cgttgacgat attcaaattc acccgcgcga caacgcgctt gttttagcaa
     1501 cgcacgggcg ctcgatctgg gtgctcgacg atctcactcc gttggaaaag attacggaag
     1561 gcacgctttc ggaagccgtg catctgttcg acctcgcgcc ggtgacgcac ttcaggctct
     1621 acaaccgaaa ggccgacact gggcacaaat ggttcatggc gcccaaccct ccttatggcg
     1681 cggtgatcaa ttattttctg aaagacaagc caaccgaaga cgtgaagatc acgatcaccg
     1741 atcgcggcgg caagactgtg cgcgaactca ctggcgcgaa agaatcgggc atgggtcgcg
     1801 ttgtttggga tctgcgtttg ccggggcctg agccttcacc gtctcccgga gttggcggct
     1861 tcttcggtcc accgattggt ccgcgcgtcg cgccgggcga ctacaacgtg aagcttgccg
     1921 tcggcgcaaa acaggccacg ggcacagtgc gcgtcgaaga agacccgcgg attcagatcg
     1981 cggaagctga tcgcgcaaag ctgaacgaag cgatgatgcg tgtttatgat ctgatgaaat
     2041 cgggcggcgc agtgcggaga tcattgcaaa gtctgaagac gcaactgact gctttgcaga
     2101 atagcttgaa agacacacct gacgttccga aaaacgtaac gcaggcagtt cagacgctgt
     2161 ctgatgatgt tactaacttg cagaaacgct ggactggcgt gccggacaca agtggcagcg
     2221 cgggcccgcc gctgcccgat gagccgcggc ctctgttcgg ccagattgtt acaattgcgt
     2281 ttgggctcga cagctacacc gcggcgccaa cctcggatga gatgctgcgc atcgacgatc
     2341 tggcgaagca gttgcgcgtc ttgatcaccg acgtcaacaa agtgatcgat gaaggcgtgc
     2401 cgcgacttaa caagcagatg agcgacgcag ggttacagat cgtgaattcg ggaaagaaga
     2461 ttccgccgcc gtagaggaaa aaacagccac agatttgcac ggattagcac agataagatt
     2521 cggttagcta tctgcggtta tccgtgttca tctgtggctt gcctctttct tctttaatac
     2581 ttcggcacgc tcggatcgac ttcgttggac caggcggtga tgccgccttt caagttgatt
     2641 aaacggcccg tgaaaccaga acgctgcaag gcttcgatcg ccttggcgct gcggccgccc
     2701 atcttgcagt gcacgaccgt ctcgcgatta gcgtcaatct cgttgatgcg attgacg
//
LOCUS       DASZZE010000421         1551 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_97655, whole genome shotgun sequence.
ACCESSION   DASZZE010000421 DASZZE010000000
VERSION     DASZZE010000421.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1551)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1551)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1551
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97655"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..782
                     /locus_tag="VHD88_08090"
     CDS             <1..782
                     /locus_tag="VHD88_08090"
                     /inference="COORDINATES: protein motif:HMM:NF015019.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004427 - inorganic diphosphate
                     phosphatase activity [Evidence IEA];
                     GO_function: GO:0009678 - diphosphate hydrolysis-driven
                     proton transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sodium/proton-translocating pyrophosphatase"
                     /protein_id="HVS21795.1"
                     /translation="AKPVLIGTAVVGATTMIFSIIMVLTNKLTNTSAINNLSLLHAPF
                     VLGLITGGAVIYWFTGASTQAVTTGAYRAVEFIKANIKLEGVEKASVADSKKVVEICT
                     KYAQKGMFNIFLGVFFATLAFAFVEPFFFIGYLISIAIFGLYQALFLSNTGSAWDNAK
                     KVVEVEMKQKGTPLHDAVVIGDTVGDPFKDTSSVAMNPVIKFTTLFGLLAVELAVSVG
                     SETGQLGKNGPLVSHILAGAFFLVSMYFVWRSFHKMRIGAD"
     gene            950..>1551
                     /locus_tag="VHD88_08095"
     CDS             950..>1551
                     /locus_tag="VHD88_08095"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HVS21796.1"
                     /translation="MIRSILFPTDFSAVANSAFPLAVSIAAQFDAIVHSVHISDGGDP
                     HITETSRYEFPATPTGASAVRVIETIVPKGEDDPAQVIMRDAKARGCDLIVMASHGRS
                     DVAQFFLGRSVAEQVARDSRIPTLIARLYGPRRTTRPIDRFQKILYVTDLAEHSKHIL
                     PVAASIAHRTRAKLEALLVFDEGDEQPADGGRATLQRFFE"
BASE COUNT          325 a          435 c          432 g          359 t
ORIGIN      
        1 cggccaagcc ggtattgatc ggcacagcgg tggtcggggc cacgacgatg atcttctcga
       61 tcatcatggt gctgaccaac aagctgacca atacctcggc aatcaacaac ctgtcgctgc
      121 tccatgctcc ctttgtgctg ggtttgatta ccggcggtgc ggtgatctac tggttcaccg
      181 gcgcttcgac gcaggcagtc acgaccggcg cttatcgcgc ggttgagttc atcaaagcga
      241 acattaaact ggaaggcgtc gaaaaagctt ccgtcgccga cagcaaaaag gtcgttgaaa
      301 tctgtacgaa gtatgcgcaa aaaggcatgt tcaatatctt tctgggcgtc ttcttcgcta
      361 cgcttgcgtt cgcgttcgtc gagccgttct tcttcatcgg ctatttgatt tcgatcgcca
      421 tcttcggact ctatcaagcg ctcttcctgt caaacacggg aagcgcgtgg gacaacgcca
      481 agaaggtcgt tgaagtcgag atgaagcaga aaggcacgcc gctgcacgac gctgtagtca
      541 tcggcgacac cgtaggcgat ccattcaaag acacttcgtc ggtcgcgatg aatccggtga
      601 tcaagttcac gacgcttttt ggtttgctag ccgttgagct ggcggtgagc gtcggcagtg
      661 aaaccggtca gcttgggaag aatggcccgc tcgtgagtca cattcttgcc ggcgccttct
      721 tcctcgtgtc gatgtatttt gtctggcgat cctttcacaa gatgcgcatc ggcgcggatt
      781 aactagacgt tttttcccct ctccgaaagg gagagggagt ttttcagcga attgctagac
      841 cgcgcggcca gagttaagta agattcacgg aacagtggag taagcagtga gagacccctt
      901 tgatttgagt ggttaactgc tcgctgctta ccgctcactg cttactggaa tgattcgctc
      961 gattcttttt cctactgatt tctcggccgt cgccaacagt gcctttccgc tggcggtgtc
     1021 gatcgccgcg cagtttgacg cgattgttca ttcggttcac atctcagacg gcggcgatcc
     1081 gcacatcact gaaacttcgc gttacgaatt tcccgcgacg ccaaccggcg cgtcagccgt
     1141 ccgagtaatc gagacgatcg tgcccaaggg cgaagacgat cccgcacagg taatcatgcg
     1201 cgacgcgaaa gcacgcggct gtgatctgat cgtgatggct tcgcacgggc gatccgacgt
     1261 ggcgcagttt tttcttgggc gcagcgtggc agagcaggtc gcgcgcgact ccaggattcc
     1321 cacactcatc gccagactgt acggcccgcg ccggaccacg cgacccatcg atcgcttcca
     1381 aaaaattctt tacgtcacgg acttggcgga acactcaaaa cacatcctgc cagtagcggc
     1441 atcgatcgcg caccgcacgc gcgccaagct tgaggcgctt ctggtgtttg acgaaggcga
     1501 cgaacaaccg gctgacggtg ggcgcgcgac tctgcaaaga ttttttgaag a
//
LOCUS       DASZZE010000422         2004 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_174354, whole genome shotgun sequence.
ACCESSION   DASZZE010000422 DASZZE010000000
VERSION     DASZZE010000422.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2004)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2004
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174354"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(220..1635)
                     /locus_tag="VHD88_08100"
     CDS             complement(220..1635)
                     /locus_tag="VHD88_08100"
                     /inference="COORDINATES: protein motif:HMM:NF025042.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4147 domain-containing protein"
                     /protein_id="HVS21797.1"
                     /translation="MPNLTQLRIAAREIFNETLRAVDARAAVWRAVRLEDSRLIVCDA
                     TIDIGDQKVYSIAIGKAAFAMAAALNEILGEKLTAGITTSNAAWYRTGSGPGSPGGQP
                     AWGGGCDRVNLASKWRAFQGGHPEPNDESLAAAQACFDLLQRADQEGAIVIFLISGGG
                     SAMIEWPINEDISLSDLRAANKALINCGASITEINAARRAFSAVKGGRLAARAPHCDQ
                     ITLIVSDVPPGEERNVASGPTLAPPRDAPDARQVIARYDLRSQLPETILRVIDTETDA
                     SKLFSDSGLTRKHFVLLDNRSELDAAAEAAGRRGFIIEISRDISDQSIEEGCSLLVAH
                     LDHLRACATDEESRSNAENSVCLISGGEFACPVRGDGVGGRNLETALRLACATSQKPG
                     TEHFVALCVGTDGIDGNSPAAGAIVDSTTIGRARAIGLDPQDFLDRSDAYSFFVALGD
                     AVATGPTGTNVRDIRILLASA"
     gene            complement(1642..>2004)
                     /locus_tag="VHD88_08105"
     CDS             complement(1642..>2004)
                     /locus_tag="VHD88_08105"
                     /inference="COORDINATES: protein motif:HMM:TIGR00426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HVS21798.1"
                     /translation="KFLASPTTKLILVLLSFAALVLSSSCAKRQRESSLSNQLTTRTA
                     SQNQATSEIGAVPRTNINTASATELEKLPGIGKALAERIVEHREKYGPFRRPEHLITV
                     RGISDHRFRALRDLITVE"
BASE COUNT          425 a          560 c          597 g          422 t
ORIGIN      
        1 gtgcgttcga tcaattcgta aaggtcggga agggaaggaa cggacgtgcg ggcattcaac
       61 gagtcagtca aatccttgaa cgaaaaacta caacccggtt cggaaggttt ttcgcttgag
      121 tgctgaagtt gagccgtcaa cgtgacctcc tgattccgta acgtttatat tccgcgagta
      181 aagctgagtc aagaagcatc gccataaaac accagggcac taagccgagg ctagtaaaat
      241 tcgaatgtcg cgcacatttg ttccggtggg cccggtcgcg accgcgtcgc cgagcgcaac
      301 gaagaatgag tacgcatcgc tgcgatcgag aaagtcttgc ggatcgagtc cgatcgctcg
      361 ggcgcggcca atcgtagtgc tatccacaat cgcgccagcg gcgggactgt tgccatcgat
      421 gccgtccgtg ccgacacaga gcgcgacgaa gtgttcggtg cccggcttct gacttgttgc
      481 acaagccagg cgcaaagccg tctccagatt tctgccgcca acgccatcgc ctctgactgg
      541 gcaggcgaat tcaccgcctg agatcagaca aactgagttc tcagcattgc tacgcgactc
      601 ttcgtcggtt gcgcacgcgc gcaggtgatc gaggtgcgcg accagcaatg aacatccttc
      661 ttcaatcgat tgatcagaga tgtctctgga aatttcgata ataaaaccgc gccggcccgc
      721 agcttcggcg gcggcatcaa gctcgcttcg gttgtcgagc aggacaaaat gcttacgagt
      781 cagcccggaa tcactgaaaa gttttgacgc atccgtttca gtgtctatca cgcgaagaat
      841 tgtctcaggc agttgcgaac gaagatcgta gcgagcgatg acctggcgcg cgtctggcgc
      901 atcgcgggga ggcgcgagcg tcgggccgga agcaacgtta cgttcttcgc ccggcggcac
      961 gtcggaaacg attagtgtga tttgatcgca atgcggcgcg cgcgccgcca gtcgccctcc
     1021 cttaacggcg gaaaaagcgc gccgcgcggc gttgatttcc gtgatcgaag caccgcaatt
     1081 gatcagtgct ttgttggcgg cgcgcaaatc tgagagcgaa atgtcttcgt tgatcggcca
     1141 ttcgatcatc gctgagccac cgccggagat taggaagatt acgatcgcgc cttcttgatc
     1201 ggcgcgttgt aggagatcga agcaagcttg cgctgccgcc aaactttcgt catttggttc
     1261 gggatggccg ccctgaaaag ctcgccactt agaagcgagg tttacccggt cgcatccacc
     1321 accccaagcg ggctgcccgc ctggggaccc cggtccgctc ccggttctgt accatgccgc
     1381 attgctagtc gtaattcctg cggtgagctt ctcgccaagt atctcattca gggccgcagc
     1441 catcgcgaag gcagcctttc caatcgcgat ggaataaacc ttctgatcgc cgatgtcgat
     1501 tgtggcatcg cagacaatca agcgcgaatc ttccagccga actgcgcgcc acacagccgc
     1561 gcgggcgtca actgcgcgca gcgtttcgtt aaagatttcg cgcgcagcga tacggagttg
     1621 ggtgagattc ggcatgggca cctactcaac cgttatcaag tctcgcagcg cccgaaaccg
     1681 gtggtcgctg atgccccgga ccgtgattaa gtgttcgggg cggcgaaacg ggccgtactt
     1741 ctcgcgatgt tcgacgatgc gctcggccag agccttgcct atgccgggga gtttctcaag
     1801 ttctgtggcg gacgcggtgt tgatgttagt tcgcggaacg gccccgattt cggaggtggc
     1861 ttggttctgc gaggctgtcc gggtcgttaa ttgattcgat aaactgcttt cgcgctgacg
     1921 cttggcgcag gaagacgaga gaaccagcgc ggcgaacgaa agcagcacga gaatcaattt
     1981 cgtcgtggga gatgccagga attt
//
LOCUS       DASZZE010000423         4714 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_275041, whole genome shotgun sequence.
ACCESSION   DASZZE010000423 DASZZE010000000
VERSION     DASZZE010000423.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4714)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4714)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4714
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_275041"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..475
                     /locus_tag="VHD88_08110"
     CDS             <1..475
                     /locus_tag="VHD88_08110"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HVS21799.1"
                     /translation="GDAAAENALLLAEVCPTVTLIHRGKQLRARREFAEALHTNHCIT
                     VFPESVVRRMIGGEHVEAVEIERAGAIKPFQMAVQGVIVRIGFEPNTELFQDQLELDE
                     KGYIGVSARQETSTKNVFAIGDVASPLSPTISSAVGDGTTAAKVIVSRLQRPRAV"
     gene            complement(675..2567)
                     /locus_tag="VHD88_08115"
     CDS             complement(675..2567)
                     /locus_tag="VHD88_08115"
                     /inference="COORDINATES: protein motif:HMM:NF036516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HVS21800.1"
                     /translation="MTTKFKVLIARTVFLSLLLLAISIAVFAQEQTLKINYHLTVSHP
                     NSHLLEVSIEVEVPSDARLESLDFQMAKWSPGRYAVFDFAKNVQEFQAVAGICPPKSR
                     CDMAMRPVTRVNDQTWRVPFMNSQSLTINYKVFGNDLSGTFSQLDSRHANFNGGCVFM
                     YIVNHKQDPVKLEIDPPKDWRIVNGRMERADQREWQFPNWDIMIDTPTEIAPNWTEDD
                     FKVDAKTYHVVVHSLGNEGGKRRELVRDIEKIVKAETAMWGPPEFDSYTFLIHFANDA
                     HSSDGMEHLTSTQIIMSGTLADPGMYEETLDAIAHEFFHVWNVKRLRPIELGPWDFTR
                     PANTRGLWIAEGITNYYGHLMQRRAGIWDDAKLFSTLGAQITEVENSPGSRLMSAEES
                     SLSAPFIDDAPHAQQTNLANTSISYYPKGEVLGLVLDLLIRGKTQGKASLDEVMRNMY
                     AEFYVKSPNATYYLRGRGYRPEDFERMVSEVAGADMSDFFKRYVHSVESPPYEEALAQ
                     VGLRFIREPRQPVAVGISADENDTTNFKIGRVRPDSPAADAGLEVGDKILSFGGLKIT
                     PTNFVKLLGRYKPGDRVSLAVQRGTRNIQTSITLGEPQILNYRIEEMKDASAPAKTLR
                     AAWMKG"
     gene            2661..3626
                     /locus_tag="VHD88_08120"
     CDS             2661..3626
                     /locus_tag="VHD88_08120"
                     /inference="COORDINATES: protein motif:HMM:NF013570.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanyl-tRNA editing protein"
                     /protein_id="HVS21801.1"
                     /translation="MSATEILYYHDSRLIEFDAHVVGLSERDDGQIAVILDRTAFYPT
                     GGGQPNDTGTLGPARVVDCIDAESDGVLHVIQGATPEIGDTVHGQVDWLRRLDHIQQH
                     TGQHILSAAFVRLFDAPTHSFRVLEHECEIDIALDDPTDERIEQAVDLANQIIWESRA
                     IRIRQVTSEEAASLPLRKEPSREGELRVIEIDDFDLTPCGGTHAKSTGEVGVITVRSW
                     ERAKGLTRIQFTAGIRAVADYRKANQTARDVAALFSAGREDSPALVARLVEENKKFRR
                     RVSDWRKLLVASKPKSCFGTEPGAVATGYPFARARATANGAVARP"
     gene            3623..3955
                     /locus_tag="VHD88_08125"
     CDS             3623..3955
                     /locus_tag="VHD88_08125"
                     /inference="COORDINATES: protein motif:HMM:NF014342.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHHA1 domain-containing protein"
                     /protein_id="HVS21802.1"
                     /translation="MREGSIIKTRIIAKVFDDRNADSLKHLALALIAHPNTVALLGSR
                     DGETARLIFARSSDAPGDMNVLMRTACSIIDGRGGGKPDMAQGGGKNVGKLPEAIEAA
                     TQQCKSKS"
     gene            4043..4119
                     /locus_tag="VHD88_08130"
     tRNA            4043..4119
                     /locus_tag="VHD88_08130"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4077..4079,aa:Ala,seq:cgc)
     gene            complement(4258..>4714)
                     /locus_tag="VHD88_08135"
     CDS             complement(4258..>4714)
                     /locus_tag="VHD88_08135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21803.1"
                     /translation="GAPICRWQHGQIKLDLMPLDEGILGFSNRWYKPAMDSAQTFEIE
                     RDVRIRVVTAPYFCATKLEAFKGRGKGDYFASHDLEDLITVVDGRRELLDELRSVSED
                     VRSYIAGAIGQMMKARQFIDALPGYLLPDSASQARINQLLARLTQMSEL"
BASE COUNT         1057 a         1280 c         1301 g         1076 t
ORIGIN      
        1 tggcgatgcg gctgcggaaa acgctctgct gctggctgaa gtttgcccga ccgtcacgct
       61 catccatcgc ggcaaacagt tgcgcgcgcg ccgtgaattc gccgaggcct tgcacacaaa
      121 tcactgcatc accgttttcc ctgagtcagt tgtgcgccgc atgatcggcg gcgaacacgt
      181 cgaagctgtc gagattgaac gcgccggcgc gatcaaacca tttcagatgg cggtgcaagg
      241 tgtaatcgtt cgaatcggct tcgaaccaaa caccgagtta tttcaagatc agctagagtt
      301 ggatgaaaaa ggttacattg gggtcagcgc tcggcaggag acaagcacaa aaaatgtttt
      361 tgcgatcggc gacgtggcca gtccgctctc gcccacgatc agcagcgcgg tgggagatgg
      421 cacaactgcg gcgaaggtga ttgtgtcgcg tctgcagagg cctcgggccg tttaagagtc
      481 gtgtcaaaac tcggtttgag ctttaaagaa aatacctttc aaacgcaaag gacgctgagg
      541 cattcgcaga ggaacgcaga gtaagccttt tctctgcgac ctttgcgaag aactctgcgc
      601 cctctgcggt tagaatagac ttgatgatca cacgtcctga gttttgacac agcttctaaa
      661 cattcggaaa attatcaacc tttcatccac gccgcgcgca gcgtcttcgc cggcgctgat
      721 gcgtccttca tttcttcaat tcgataattc aaaatctgcg gctcaccaag cgtgatggag
      781 gtttgtatgt ttcgcgtgcc tcgctggacg gccagagaaa cgcgatcgcc gggtttgtag
      841 cgaccgagca acttcacaaa gttagtcggc gtgatcttaa gtccaccaaa cgaaagtatc
      901 ttgtcgccta cttccaaacc agcatccgcg gcgggcgagt cgggacgcac gcgcccgatc
      961 ttaaagttag tcgtatcatt ttcgtcggcg ctgattccca cggcaactgg ctgtcgcggc
     1021 tcacgaatga aacgcagtcc tacttgcgcc aaagcttctt cgtatggcgg cgactcgacg
     1081 ctatgaacgt aacgtttgaa aaagtcgctc atgtccgcgc cggcaacttc cgaaaccatg
     1141 cgctcaaagt cttccggtct gtagccgcgc ccacgcagat agtaagtggc gttcggactc
     1201 ttcacataga actctgcata catgttccgc atcacttcgt cgagtgaagc tttgccctgc
     1261 gttttgccac gaatcagcaa gtcgagaacc agaccgagca cttcgccctt tgggtaataa
     1321 ctaatcgacg tgttggcaag gttcgtctgc tgcgcgtgcg gcgcgtcgtc gataaacggc
     1381 gcggagagcg aagattcttc cgcgctcatc aggcgactgc ccggagagtt ctcgacttcg
     1441 gtaatttgcg caccaagtgt gctgaacaac ttcgcgtcat cccaaatccc cgcgcggcgc
     1501 tgcatcaggt ggccgtagta attcgtgatg ccttcggcga tccagagacc gcgcgtgttt
     1561 gccggccgcg tgaaatccca ggggcccagc tcgatcggcc gcagacgctt gacgttccac
     1621 acgtgaaaga attcgtgcgc gatagcgtcg agcgtctctt catacattcc tggatcagcg
     1681 agcgtgccgg acatgatgat ctgcgtcgaa gtgagatgtt ccatgccgtc gctcgaatga
     1741 gcatcattgg cgaagtgaat caggaaggtg tacgaatcga attccggcgg accccacatc
     1801 gccgtctcgg ccttcacaat cttttcgatg tcccgcacca gctcacggcg cttgccgcct
     1861 tcattgccta acgaatgaac tacgacgtga tacgtcttgg cgtcgacttt gaaatcatct
     1921 tcggtccagt tgggcgcaat ctcggtcggc gtgtcgatca tgatgtccca gttgggaaac
     1981 tgccattcgc gctggtctgc tcgctccatt cggccgttca caatgcgcca gtctttcggc
     2041 ggatcgattt cgagcttaac cggatcctgt ttgtgattga cgatgtacat gaagacgcaa
     2101 ccgccgttga agttcgcgtg gcgcgaatct agttgagaga aggtgccgga gagatcgttt
     2161 ccgaagactt tgtaattgat cgtcaaactc tgcgagttca tgaaaggaac gcgccaggtt
     2221 tggtcgttca cccgcgtgac gggccgcatc gccatatcgc atcgggattt cggtgggcat
     2281 attcccgcga ctgcctgaaa ttcctgaacg ttcttcgcga aatcaaatac ggcgtaacgc
     2341 cccggcgacc atttggccat ttgaaaatcg agcgattcga gtcttgcgtc tgatggcacc
     2401 tcaacttcga tactcacttc aaggagatgc gagttcggat gcgacaccgt caggtggtaa
     2461 ttgatcttga gcgtctgctc ctgggcaaag acagcaatgc tgatcgccag cagcagcaag
     2521 gacaggaata cagtgcgcgc gataagaact ttgaatttag tggtcatttg acgatcagaa
     2581 tatcgccttt gcgttcctcc gcgaaaccct ccgcgtcctc tgcggttaga tctgatgtct
     2641 ggtaacattc aagataattc atgagcgcaa ctgaaatact ctattaccac gattcacgtc
     2701 tgatcgagtt cgacgcgcac gtcgtgggcc tgagcgagcg cgacgacggc caaattgcgg
     2761 tcattctcga tcgcacggcg ttttatccca ccggcggcgg acaaccaaat gacacgggaa
     2821 ctctcggtcc ggcacgcgtg gtcgattgta tcgacgccga aagcgatggt gtcttgcacg
     2881 tgatccaggg agcaacgccc gagatcggcg acacggttca cggccaagtt gattggctgc
     2941 ggcgcctcga tcacattcag cagcatacgg gtcagcacat tctttctgcc gcgttcgtta
     3001 ggttgttcga cgcgccgacc cacagctttc gcgtgcttga gcacgaatgc gagatcgata
     3061 tcgcgcttga cgatcctaca gacgagcgaa ttgagcaggc agtcgatcta gccaatcaaa
     3121 tcatctggga gagtcgtgcg atccggattc gtcaggtgac gtcggaagaa gctgcatcac
     3181 tgccgctgcg taaggaaccg tcgcgtgaag gtgagctacg agtgattgag atcgacgact
     3241 tcgatctgac tccatgtggt ggcacgcatg cgaaatcaac cggcgaagtc ggcgtgatta
     3301 cggtgcgaag ctgggagcga gccaaaggct tgacgcgaat tcaattcacg gctggcattc
     3361 gcgctgtcgc tgattatcgt aaagccaacc aaaccgcgcg tgacgtggct gctttattta
     3421 gcgccggacg cgaagactca ccggcgcttg tcgcacgatt ggttgaagag aataaaaaat
     3481 tccgacgtcg tgttagcgac tggaggaagt tgcttgtcgc gtcgaagccg aagagttgct
     3541 ttggtacaga accgggagcg gtagcgaccg ggtacccgtt tgcacgagcg cgagcgacgg
     3601 cgaacggggc agtagcccga ccgtgaggga gggctccatt atcaaaaccc gcatcatcgc
     3661 taaagtcttc gatgatcgta acgccgattc ccttaaacat ctcgcccttg cgctgatcgc
     3721 tcatccgaat actgtggcgc tcttgggttc acgcgacggc gaaaccgcgc gcctgatttt
     3781 tgcgcgatcg tcggatgcgc ccggcgacat gaacgtacta atgcgaacag cctgttcaat
     3841 aatcgacggc cgcggcggcg gcaaaccgga catggctcaa ggcggtggaa agaatgtggg
     3901 gaagcttcca gaagcaatcg aggctgccac acaacagtgc aagagcaaga gttgatcttt
     3961 ctaatcggcg tttatccgtg gaaatctgtg gctgatgctg caacttgaaa cctgaaactt
     4021 gaaactgtat tctcatgcgc gtggggcagt agctcagttt ggcagagcgc cgcgttcgca
     4081 atgcggaggc caggggttcg agccccctct gctccaccaa tcaaatcaat gacttacggc
     4141 gaggcactac tcgccgtttt tgtttccgtt tgccaatacg ttgccaaact tcgcatattt
     4201 gtcggcaacg acaaggtttt ccaccgctcg acgcttcgct tcatatttga tccgtaatta
     4261 gagttctgac atttgcgtca gtctggcaag tagctggtta attcgggctt ggctggccga
     4321 gtctggcagt aaatagccag gaagggcatc gatgaactgc cgggccttca tcatctgacc
     4381 gatcgcgcct gcgatgtagg accgaacgtc ttcagatacc gatcgcagtt cgtccaggag
     4441 ttctcgtcgg ccgtcgacaa ctgttattag atcttcaaga tcatgactcg caaagtaatc
     4501 gccttttcct cgacctttga acgcctcaag cttggtcgca cagaaatagg gagcagtgac
     4561 aacgcgaatg cgaacgtctc tttcgatctc aaatgtctgc gctgagtcca tcgctggctt
     4621 gtaccagcgg ttggaaaagc caagaattcc ttcgtccaaa ggcatcagat ccaacttgat
     4681 ctgaccatgt tgccagcggc aaatgggagc gccc
//
LOCUS       DASZZE010000424         6640 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_31287, whole genome shotgun sequence.
ACCESSION   DASZZE010000424 DASZZE010000000
VERSION     DASZZE010000424.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6640)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6640)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6640
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31287"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1403)
                     /locus_tag="VHD88_08140"
     CDS             complement(<1..1403)
                     /locus_tag="VHD88_08140"
                     /inference="COORDINATES: protein motif:HMM:NF014442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006306 - DNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HVS21804.1"
                     /translation="MAIPQTFDEAFARARQLVSIFGQNEGKYLAPGYSEAQARLDFID
                     KFWIALGWDVNHQTQTDPYKQEVKVERGVATSEFRKRADYAFLAPNFRDVRFFVEAKK
                     PHAGLDNPNFYFQTIRYGWNNKTPLSVLTDFEELRVLDCRYKPNITTALGHAVLKYHY
                     ADYSDKEKFRTIYYLFSREAVLNGSIESFAKGMPKLSRKRAQRGVVKDEHQDIDESFL
                     QELDEYREELARAFKRKNPELDGAALTEVTQRTLDRLVFMRFLEDKLIESDPLIEDLH
                     KRGAAWHNFISTSRRLDRVYNGIIFKEHPLLDKDSFKVDEKVFEKISGNLAHANSPYD
                     FNAIPIHILGSIYERFLGKVIFATDKRARVEEKPEVRKAGGVYYTPEYIVRYIVDNTV
                     GKLIEGKTPEEIQEMRFADIACGSGSFLLGVYDTLLRYHTAYYNRNKRTKAEGLKAKC
                     VERPDGMLQLSLWQKRQ"
     gene            complement(1572..2792)
                     /locus_tag="VHD88_08145"
     CDS             complement(1572..2792)
                     /locus_tag="VHD88_08145"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HVS21805.1"
                     /translation="MAEHTSTLRILSIVEATTINAVAKSVLGFFRSARELNQQSVDFP
                     VIDGSFATFERRREDDHSPNEFVTAARESGFQIDVIPERRRFDLSVIPALRKIVEDRQ
                     PDIVVTNSVKSHFLLWRSRLWKDFPWIAFHHGYTDTDRKMRVYNRLDRWSLPRADRLV
                     TVCRVFAQELSSTTGVPLERISVQHNSIRPQPRPSADEVQALKERLGIANGERMILAV
                     GRLSKEKAHIDLLVAFKRLRETNPEINCKLIIVGDGPERGKLEAVVESFDLKESVIFT
                     GQVRDVQTSYAVADAFALPSHSEGSPNVLLEAMAANLAVVATKVGGVPEIVVDSESAL
                     LVAANDPPALASAITRLLTDSELARRLTINASALAITKHSPEQYVRSLVEIYREVIDR
                     RMTKRSSSQSLVQQ"
     gene            complement(3022..4218)
                     /locus_tag="VHD88_08150"
     CDS             complement(3022..4218)
                     /locus_tag="VHD88_08150"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HVS21806.1"
                     /translation="MRVLQFAPRVCWPLDTGAKLRNFHLARVLSERANVTLLAFTDEE
                     QSLSAIENVYERVIAVKRDPGYTPSKILRGALGRTPLPVLNYTTDAMKQALERVLSEH
                     DFDIVQIESIHLMAYLPIIRAARTRPLVICDWHNIESELMQRYAERERNFLRKTYAQK
                     TARQLSASEQRATREFDAHLVVSERDRERLLGLNTNARIFVIENGVDTAYYSDAPTAV
                     RTHRIVFVGSMDYHANIDAVVDFAREVWPDLRERKPELVFTIVGRDPATEVRELASIP
                     GIEVTGTIDDVRPFYREAIAAVVPLKVGGGSRLKILEAMAAGVLVVSTTLGAEGLDVQ
                     HGENILIADTNEQLVAAIAGLFENEDQRKQIIAGARALVSERHDWSKLGGNLFEVYQR
                     LLLGSQ"
     gene            4443..5996
                     /locus_tag="VHD88_08155"
     CDS             4443..5996
                     /locus_tag="VHD88_08155"
                     /inference="COORDINATES: protein motif:HMM:NF024832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide biosynthesis protein"
                     /protein_id="HVS21807.1"
                     /translation="MLSNVSSKQQQFASDDEDRHFRTDHLEDDLAGRSARGGAVTMAA
                     QSLRFVIRVASTIALARLLTPRDYGLIGMVAILIDFVSMFQYMGLSTATVKWSQLNHR
                     QVSTLFWINVALSAAIMLMTMGSAPLLAWFYHEPRLIGITLCYAVSIFLMGLNIQHEA
                     ILARQMRFGTIALIELAAILIGLCAAVVAALYGAGYWALVVNQLVMTMVNVVGAWATC
                     KWRPGLPGRGAGVRSMLSYGGNLTGYNVMNYFSRNLDNALIGKFWGAYQLGIYSRAYQ
                     MLLMPMAQINNPLVAVAVPALSRLTDSPERYRAAYLKIVEKIAMITMPGIVFMIAMSD
                     WLVLLLLGPQWREAGRIFMLLGVAAIVQPVTRTAPWLFTTQGRAREMLKWGFIGGGIA
                     MASIIAGLPWGATGVAASYAATDLCISTPLLFWYVGRRGPVRSGDFYRTIAAPVCASL
                     CSLAALLICRPWLEGLPSLIARLSIAFGITVAVSVMVLAALPAGRLAMRNLKEMLMLL
                     VKPKRESVA"
     gene            6012..>6640
                     /locus_tag="VHD88_08160"
     CDS             6012..>6640
                     /locus_tag="VHD88_08160"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HVS21808.1"
                     /translation="MLKKFKQVTLQSLKTAGVSTLVRDSRWRRQRLLILAYHGISLTD
                     EHLWNSSQFMPADVLRMRFELLKKSNCAVLPLDEAVKHLYANDLPDRAVAITFDDGTS
                     DFYRRAFPVIKEFGFPVTLYLTTFYTHYNRPVFDLMCSYLLWKGRNEVLDLRALTGQE
                     SRIDLRGQASQEAALAEIKAFARARKMSAEDKDALLASLAAQIRVDYDAL"
BASE COUNT         1369 a         1794 c         1890 g         1587 t
ORIGIN      
        1 atttgtcgct tctgccaaag cgagagctga agcatcccat ctggccgttc aacgcacttc
       61 gctttcaaac cctctgcctt cgttcgcttg ttgcggttgt agtaagcggt gtgatagcga
      121 agcagtgtgt cgtaaacgcc gagcagaaag gacccgctgc cgcaggcgat atccgcaaag
      181 cgcatctcct gaatctcttc cggagttttt ccctcgataa gctttccgac cgtgttatcg
      241 acgatgtagc ggacgatgta ttcaggcgtg tagtagacgc cgccggcttt ccgcacttcc
      301 ggcttttcct cgacccgggc gcgcttgtcg gttgcgaaaa tgactttgcc caggaagcgc
      361 tcgtagatgc tgccgagaat gtgaatggga atcgcgttga aatcgtaagg cgagttagcg
      421 tgagccagat taccgctaat cttttcaaag accttctcgt caaccttgaa gctgtctttg
      481 tcgagtagcg ggtgctcttt gaagattatt ccgttgtaaa cccggtcgag gcggcgcgat
      541 gttgagatga agttatgcca ggcagctcct cgcttgtgca ggtcttcaat cagcggatcg
      601 ctttcaatca gcttgtcctc aagaaacctc atgaagacga gacgatccag cgttcgttgc
      661 gtgacttcgg tcagtgcggc gccgtcgagt tcgggatttt ttcgcttaaa ggcgcgagcg
      721 agttcttcgc gatactcgtc aagctcttgc agaaacgatt cgtcgatgtc ctgatgttcg
      781 tccttgacga cgccgcgttg cgcccgcttg cgcgaaagct tgggcattcc tttcgcaaag
      841 ctctctatcg atccattcag tacagcttcc cgcgaaaaca gatagtaaat tgtccgaaac
      901 ttctctttgt cgctgtagtc tgcgtagtga tatttcagga cggcgtgtcc aagtgcggtt
      961 gtgatattcg gcttgtagcg acaatcgagt acgcgcaact cttcaaagtc agtgagcacg
     1021 gagagcggcg ttttgttatt ccagccgtaa cggatggtct gaaaatagaa gttgggatta
     1081 tctaagccgg cgtgcggctt cttggcttca acgaagaagc gcacgtcacg aaaattaggc
     1141 gcaaggaaag catagtcggc gcgcttgcga aactcactgg tagccacgcc acgctcgact
     1201 ttcacctctt gtttgtaggg atctgtttgt gtctggtgat taacgtccca accgagtgcg
     1261 atccagaact tgtcaatgaa gtccaaacgg gcctgagctt cggagtaccc cggcgcgaga
     1321 tacttgcctt cgttctggcc gaagattgaa acgagttgcc tggcgcgcgc gaaggcctcg
     1381 tcaaaggttt gtgggatggc catgaggcga cactataaca aaagctcgtc tgcgccgcga
     1441 tttgaatgca cggcgaggcg atcaccgcgg caaggtgccg ccgacatcag cgattgagat
     1501 gcgcttctcg cgtttagtcg agttagtcga gcggttccgc cagagtcgtt accacagttg
     1561 ttctctgggc gttattgctg gactaaggac tgtgacgatg agcgtttagt cattcgtcga
     1621 tcgataacct ctcgatagat ctcaaccaaa gatcgaacgt attgttccgg cgaatgcttt
     1681 gtgatggcga gcgctgatgc atttatcgtg agtcggcgcg caagttcgct atcggtaagc
     1741 aggcgagtga ttgccgaagc gagcgccggt gggtcattcg ccgcaaccaa caatgcactc
     1801 tcgctatcca caactatctc gggcaccccg ccaactttcg tcgcgacgac ggcaagattc
     1861 gcggccatcg cttccagcag aacgttgggc gagccttcgc tgtgtgaagg cagcgcgaag
     1921 gcgtcagcca ctgcataaga agtctgaaca tcgcgcacct gaccagtgaa gatcacgctc
     1981 tctttcaagt cgaatgattc aacgacggct tctaactttc cgcgttccgg gccgtcgccg
     2041 acgatgatca gcttgcaatt gatttcagga ttcgtttcgc gcaagcgttt gaatgcgacg
     2101 agtagatcga tgtgggcttt ctcttttgac aagcggccga cggcgagaat cattcgttcg
     2161 ccattggcga ttcccaaacg ctctttcaaa gcttgcacct catcggcgct cggcctcggc
     2221 tgcggtcgaa tagaattgtg ctgtacggaa attctctcga gcgggacgcc ggtcgtgctc
     2281 gacagttcct gcgcgaagac tcggcaaacc gtgacgagtc gatcagctct cggcagcgac
     2341 cagcgatcga ggcggttgta aacgcgcatc tttcggtcgg tgtcggtata gccgtgatgg
     2401 aaggcgatcc agggaaaatc tttccagagt cgcgaacgcc acaacagaaa atgcgatttg
     2461 actgaattag tcacaacgat gtccggctgg cgatcttcga cgatttttcg cagcgcggga
     2521 atcacgctca ggtcgaaacg ccgccgctca ggaatgacgt cgatttggaa tcctgattcg
     2581 cgggccgcgg tcacaaattc gtttggcgag tggtcatctt cgcgccggcg ttcgaaggtc
     2641 gcaaagctcc catcgataac tggaaagtcc acggactgtt gattgagttc gcgcgcggag
     2701 cgaaagaagc ccagcacgct cttggcgacg gcgttgatcg tcgttgcctc gacgatcgag
     2761 agaatcctta gagttgatgt atgttccgcc attgtttgat tgactgtttt gtcgccggtt
     2821 accggtgaaa gaatcggtct ggtatcccag ttctctgcac gaaagccgca tagcggcgaa
     2881 atatttatag agcggcggac gaaaaatcag atcccaagct ccgaaggagc gaaatagatt
     2941 ttctgccgcc cataaatggg cttgggagac tacaaatccg actcgtttct ataaatatct
     3001 cgtccctccg ggactgtgct ctcactgact gccaagtagt agccgctgat aaacctcgaa
     3061 cagatttcca ccgagcttag accaatcgtg ccgttcagac accaacgcac gcgctccagc
     3121 aatgatctgc tttcgctgat cttcattctc aaacaggccg gcgattgctg cgaccaactg
     3181 ttcgttcgta tcggcgatca gaatattctc gccgtgctgc acatccaaac cttccgcgcc
     3241 cagcgtggtt gaaacgacga gcacgcccgc ggccatcgcc tccagaattt ttaagcgact
     3301 gccgccgccg actttgagtg gcacgactgc cgcgatcgcc tcgcgataaa aaggacgcac
     3361 gtcgtcaatc gtgccggtga cttcgatgcc tggaattgac gcgagttcgc ggacttcagt
     3421 cgcgggatcg cgacccacga tcgtaaagac cagttcgggt ttgcgctctc gcagatccgg
     3481 ccagacctcg cgcgcaaaat ccacgaccgc gtcgatgttg gcgtgataat ccatcgaacc
     3541 gacgaagacg atccggtgcg tcctgactgc ggttggcgcg tctgagtagt aagccgtatc
     3601 aactccattc tcaatcacaa agatgcgcgc gttggtgtta agaccaagca atcgctcgcg
     3661 atctctttcg ctaacgacga ggtgcgcgtc gaactcgcgg gtcgctcgct gctccgacgc
     3721 gctcaactgg cgggcagttt tttgtgcgta agtcttgcgg agaaagtttc gctcgcgttc
     3781 ggcgtatcgt tgcatcagtt ccgattcgat gttgtgccaa tcgcaaatca ccagcggtcg
     3841 ggtgcgcgcc gcgcgaatga tcggcaggta agccatcaga tgaatgcttt cgatttggac
     3901 aatatcaaag tcgtgttcgc tgaggacgcg ctccagcgct tgcttcatcg cgtcggtcgt
     3961 gtagttgagc actggcagcg gtgtgcgtcc cagcgcgcca cgcagaatct tcgaaggtgt
     4021 gtagcctgga tctcgtttga ccgcgatgac tctttcataa acgttttcga tcgcgctcaa
     4081 cgattgttcc tcgtcggtga aagcgagcag cgtcacgttc gcgcgttcag agagtacccg
     4141 cgcgaggtga aagttgcgca gctttgcgcc cgtgtcgagc ggccagcaaa ctctcggcgc
     4201 aaattgcagc acgcgcatgt tggaatcaga tggtttcagg tcaattctcc aattgaggcg
     4261 ccggttgctg cgcttggctt cagattctaa cggaaaagat agatgtatcc cgaagaattt
     4321 cctttgattg gcgagaaatc actggatttc aggagtcctt ctttgtgtat aatgatggtg
     4381 gcagttttgc cgccctcctg acgtggcccg ccacgcgatc ccgctctgag acgctttccg
     4441 agatgttgtc gaacgtatct tcaaagcagc agcagtttgc cagcgatgac gaggatcgtc
     4501 acttccgtac agatcactta gaggacgatc tggccggccg ttccgctcgc ggcggagccg
     4561 tgaccatggc cgcgcaatcg ttgaggttcg tgattcgcgt ggcatcgacg atcgcgctgg
     4621 cgcgtctgct gacgccgaga gactatggcc tgatcggcat ggtcgccatc ctgatcgact
     4681 tcgtcagcat gtttcagtac atgggacttt caaccgcgac cgtcaaatgg tcccaactta
     4741 atcaccggca agtaagcaca cttttttgga tcaacgtggc attgagcgcc gcgatcatgt
     4801 tgatgaccat gggcagcgcg cctttgctcg cctggttcta tcacgagccg cgcctgatcg
     4861 gaattacctt gtgctatgca gtttcgattt tcctcatggg actaaacatt cagcacgaag
     4921 cgatcctcgc gcgacaaatg cgatttggga ccatcgctct gattgagctg gcggcgatac
     4981 tgatcggttt gtgtgccgcg gtcgtggccg cgctttacgg tgcaggctac tgggcgctcg
     5041 tggtcaatca actcgtgatg acgatggtta acgtagtcgg agcctgggcc acgtgcaagt
     5101 ggcgaccggg actgccggga cgcggcgcgg gtgtgcgctc aatgctttcg tatggcggga
     5161 acctcaccgg ctacaacgtg atgaattatt tctcgcgcaa tctggacaac gcgctgatcg
     5221 gaaaattctg gggagcatat caactgggca tttactcaag ggcgtatcaa atgctcttga
     5281 tgccgatggc gcaaatcaac aatccgctgg tggctgtagc cgtgccggcc ctgagcagat
     5341 tgacagattc gccggagcgc tatcgcgctg cttatctcaa gatcgtggaa aagatcgcga
     5401 tgatcacgat gcccggaatt gtgttcatga ttgcgatgtc cgattggctg gtactgcttc
     5461 tcttaggacc gcagtggcgc gaagccggac gcattttcat gctgctcggt gtggcggcga
     5521 tcgttcaacc agtcacgcga actgcgccgt ggctgttcac tacgcaggga cgcgcgcgtg
     5581 agatgctcaa gtggggcttc atcggtggcg gcatcgccat ggcttccatc atcgccggct
     5641 tgccgtgggg agcgaccggc gttgcggctt cgtacgcagc cacggacctt tgcatctcga
     5701 cgccgcttct gttctggtac gtggggcgtc gcgggccggt caggtccggc gacttctatc
     5761 gcacgatcgc tgcgcctgtt tgtgcctcgc tctgttcact cgcggctctg ctcatttgtc
     5821 gcccgtggct ggaaggtctg ccgagcctca tcgcacgact aagcattgcg ttcggaataa
     5881 ctgtcgctgt gtctgtgatg gtcttggcgg cgctgcccgc gggacgactg gcgatgcgaa
     5941 acctgaaaga gatgctaatg ctgctggtga agccgaagcg agagtccgtt gcctagtttg
     6001 tcgaatcgac gatgctaaag aaattcaagc aagtaacact gcaatctctg aagacggccg
     6061 gcgtctcgac gttggttcgc gatagtcgtt ggcgccggca acggctgttg attctcgcgt
     6121 atcacggaat ctctctgacg gacgagcatc tctggaacag ctcgcagttc atgcccgcgg
     6181 acgtactccg aatgagattt gaattgctca agaaatcgaa ctgcgcggtt ttgcctctgg
     6241 atgaagcggt caagcatctg tacgcgaatg acctgccaga cagagccgtg gcgataactt
     6301 tcgatgacgg cacttccgat ttttatcgcc gagcctttcc cgtgatcaaa gagttcggct
     6361 ttccggtgac gctctatctc acgactttct acacgcatta caaccgtccc gtgttcgatc
     6421 tgatgtgttc gtacctgctt tggaagggtc gcaacgaagt tctggatttg cgcgcgctca
     6481 ccggacagga atcaagaata gatttgcgcg gccaggcgtc gcaggaggct gcgcttgccg
     6541 agatcaaagc atttgcccgc gcgcggaaaa tgtccgccga agacaaggac gcgctgcttg
     6601 cttcattggc cgcgcaaatc agagtcgatt acgacgcgct
//
LOCUS       DASZZE010000425         3303 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_223349, whole genome shotgun sequence.
ACCESSION   DASZZE010000425 DASZZE010000000
VERSION     DASZZE010000425.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3303)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3303)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3303
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_223349"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..357
                     /locus_tag="VHD88_08165"
     CDS             <1..357
                     /locus_tag="VHD88_08165"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HVS21809.1"
                     /translation="AAKVVAQHHEKWDGSGYPLGLKAEEIDICARIFSVADAFDAITS
                     DRVYRQGRPYEAAARELDEWAGRQFDRKVVEAFHRVPQEDWAELRRRSLMRKPHDSDW
                     QPVASTIESQLSAPVS"
     gene            complement(358..1470)
                     /locus_tag="VHD88_08170"
     CDS             complement(358..1470)
                     /locus_tag="VHD88_08170"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HVS21810.1"
                     /translation="MIVLLFPAANSHAQVKPKPSPTPKVQPKAEDQEPVRVFTEEVRL
                     PVSAMDQFGHYDPTLEIDDVLVLEDGEPQKIRSVRHVPANVLLILDTGGDGNGLGGLS
                     KKTSTTRDVALKLISRLPEGDRIAVLQSSNQAELLQSWTDDVDELTRALTWKMFAGKR
                     SRLFETMAKAAQLLSDQPEGSRHVILVTDGVETPGGKVSLDEALKQVLAASATVHVIS
                     YTTFVRQKNDKKQLSLRVEQRPASSDPISANDPTLPPGVTRSPSFGVAITFDPAMRKL
                     RKAYEADTKKSEKWLAALADETGGRIFLPKSTDEMIGEGEEVAREIGAEYVVTYRPTR
                     PLAGAKPGEYRKVEVASRRVGLHLRSRRGYVVPNPQ"
     gene            complement(1573..2583)
                     /gene="pta"
                     /locus_tag="VHD88_08175"
     CDS             complement(1573..2583)
                     /gene="pta"
                     /locus_tag="VHD88_08175"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF007233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008959 - phosphate acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HVS21811.1"
                     /translation="MSILDYIRQRAAANPQHIVLPEGEDPRTVAAASAAARQRLARIT
                     VLGNEEGIRAAARQAGADLGGVEVIDHTRASDLEKMVSVLYEARRAKGISVDEARTAL
                     RDPLYYGNLMVRAGRADGSVAGATNTTSHTVRAALHCIGVRPGFKLVSSFFLMTLRDQ
                     SVGHNGAMIFADCGVVIEPSAADLAEIAIASADSCRALIGAEPRVAMLSFSTKGSAHH
                     RLIDKVVEATRTVRARAPEIEIDGELQADAALVPAIAQSKAPGSGVGGRANVLIFPDL
                     QSGNIAYKLTERLAGATAIGPILQGLDRPANDLSRGCKAEDIVDAIAITAVQAQARKA
                     AR"
     gene            2813..>3303
                     /locus_tag="VHD88_08180"
     CDS             2813..>3303
                     /locus_tag="VHD88_08180"
                     /inference="COORDINATES: protein motif:HMM:NF018508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1232 domain-containing protein"
                     /protein_id="HVS21812.1"
                     /translation="MKNLLMFLPNMIILCARLMMDSRVPRTERALFAAAVIYAIIPFD
                     FIPDMIPFVGQLDDVFLISLTLLRLIDRTDDKIVREHWRGGGDIVQLAESVVTIAPLL
                     MPRRIARVLLAKVKPTAEGSGLLANAAKFEPVLVETSEREQQPDRLGRLADIGKKRTS
                     KSA"
BASE COUNT          660 a          988 c          953 g          702 t
ORIGIN      
        1 gcggcaaaag ttgtcgcgca gcatcacgag aagtgggacg gatcaggtta tccgctcgga
       61 ttgaaagccg aagagattga catctgcgcg cgcatctttt ccgtcgccga cgcgtttgac
      121 gccatcacca gcgaccgcgt atatcgccag ggccgaccgt atgaagccgc cgcgcgagag
      181 ctggacgaat gggccgggcg gcaattcgat cggaaagtag tcgaagcgtt tcaccgcgtg
      241 ccccaggaag attgggccga gctgcgccgc cgctcgctca tgcggaaacc tcacgactct
      301 gattggcagc cggttgcttc gacaattgaa tctcagttga gtgcgccggt aagttagtta
      361 ttgaggatta ggcacgacgt agccgcgacg gctgcgcagg tgcagcccga cgcgccgcga
      421 agcaacttca acctttcgat actctccagg cttcgcccca gccagtgggc gcgtgggccg
      481 atacgtaacg acatactccg cgccgatctc gcgcgcgact tcttcgcctt caccaatcat
      541 ttcatcggtt gacttgggta gaaaaatcct gccgccggtt tcgtcagcca gcgccgccag
      601 ccacttctcg ctcttcttcg tgtcggcctc ataagctttt cggagctttc gcatcgccgg
      661 atcgaaagtg atagcgacgc cgaaagaggg actccgagtt acgccgggtg gcagggttgg
      721 atcgttagca ctaattggat ctgatgaagc tgggcgctgt tcgactctga gacttagctg
      781 tttcttatcg ttcttctggc gcacgaacgt cgtgtaactg atgacgtgta ccgtcgcact
      841 cgcagccagt acctgtttca acgcctcgtc aaggcttact ttcccgccgg gtgtttcgac
      901 accgtcggtc accaaaatta cgtgccgact tccttcgggc tgatcagaca gtaactgcgc
      961 cgctttcgcc atcgtctcaa aaagtcgcga gcgcttaccg gcgaacatct tccatgtcag
     1021 cgcgcgcgtg agctcgtcaa cgtcgtcggt ccacgattga agcagctccg cttgattgga
     1081 cgattgcagc acggcaatcc gatcgccttc gggcaggcgt gagatcagct tcaacgcgac
     1141 gtctcgcgtg gtgctggtct ttttcgacaa accgccgagg ccgttcccat cgccgccggt
     1201 atccagaatc aacaacacgt tcgctggaac gtgacgcacg ctgcgaattt tctgcggctc
     1261 gccgtcttcc aacaccagaa cgtcatcgat ttcgagcgtg ggatcgtaat ggccaaattg
     1321 gtccatcgcc gagaccggca gacgaacctc ctcagtgaag actcgcaccg gctcttgatc
     1381 ttccgctttt ggttggactt tcggagtcgg cgagggcttt ggcttgacct gagcgtgcga
     1441 gttggccgca ggaaaaagaa gaacgatcaa gacgatcagt agtcggcgca aactggattg
     1501 acctcagcta cttcgattaa gacttacggc tcctttgatg cgcaattggc caaggagtag
     1561 ttgcccgcta tctcagcgag cggcttttcg cgcctgcgcc tgaaccgcgg tgatcgcaat
     1621 cgcgtcaacg atgtcttcgg ccttgcaccc gcgagagaga tcgttggcgg gtcgatcaag
     1681 tccctgcagg attgggccga tcgccgtcgc gccggcaagc cgctcagtca acttataagc
     1741 gatgttgccg gattgcagat cgggaaagat gagcacgttg gcgcggccgc cgacgcctga
     1801 gcccggggct ttcgattgcg cgatcgccgg caccagcgcc gcgtccgcct gcaactcgcc
     1861 gtcgatctcg atctctggcg cgcgggcgcg cacggtgcgc gtcgcttcca cgactttgtc
     1921 aatcaagcgg tgatgcgcgc tgcccttcgt cgagaacgaa agcatcgcga ctcgcggctc
     1981 cgcgccaatc agcgcgcgac aggaatccgc cgaagcgatt gcgatctcgg ctaagtcagc
     2041 agcactcggt tcgatcacga cgccgcagtc ggcaaagatc atggcgccgt tatgaccgac
     2101 gctctgatcg cggagagtca tcaggaagaa actggacaca agcttgaacc ccgggcgcac
     2161 gccgatgcaa tgcaatgccg cacgcaccgt gtgcgaggtc gtatttgttg cgccggcgac
     2221 cgaaccgtca gcgcggcccg cgcgcaccat caagttgccg tagtagagtg gatcgcgcag
     2281 cgcagtccgc gcttcgtcaa cactgatccc tttcgcgcgt cgcgcctcgt aaagcacgga
     2341 aaccattttc tcaagatcac tagcgcgggt gtgatcgatg acctcaacgc cgcccaggtc
     2401 agcgcctgct tgccgtgccg cggcgcgaat accttcttcg tttcccagaa ccgtgatccg
     2461 cgccagacgt tggcgcgcgg cggcgctggc tgcggcgacg gtacgcggat cctctccctc
     2521 tggcaaaacg atatgctgcg gatttgcggc tgcgcgctgg cgaatgtaat cgagaatcga
     2581 catgttcagt aaacagcggg cggtaagcag tgggcagttt tatgagcaaa gaatctgatt
     2641 ctggtcctcg gcatttgtcg acgacagagt ctaaccgagt gaaaccgaga cgacaagctt
     2701 taagggctaa cgcgcttcgt gctagagtta cggcaacgca gtgagccttt ttctactgtc
     2761 tgctgtccac tgacttctat caggcatgtc taaactcgaa ctcaaaagcc ggatgaagaa
     2821 cctgctcatg ttcctgccga acatgatcat tctgtgcgcc agattgatga tggattcgcg
     2881 cgtgccgcgg accgagcgcg cgctgtttgc cgccgcagtc atttacgcca tcattccatt
     2941 cgacttcatt cccgacatga tcccgttcgt aggacagctt gatgatgtgt ttctgatttc
     3001 gctcacgctg ttgcgcttga tcgatcgcac cgacgacaaa atcgtgcgcg agcattggcg
     3061 cggcggcggc gacatagtcc aactggctga atccgtggtc acgattgctc cgctgctgat
     3121 gccgcgacgt atcgcccgcg tgctcctcgc caaagtgaaa cctaccgccg aaggctccgg
     3181 cttgctggcc aatgctgcaa agtttgaacc ggtgctggtc gagacttccg agcgcgagca
     3241 gcagccagat cgtttgggac ggctcgcaga tattggaaag aaacgtactt cgaaatcagc
     3301 cta
//
LOCUS       DASZZE010000426         2311 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_304927, whole genome shotgun sequence.
ACCESSION   DASZZE010000426 DASZZE010000000
VERSION     DASZZE010000426.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2311)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2311)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2311
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_304927"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..932
                     /locus_tag="VHD88_08185"
     CDS             <1..932
                     /locus_tag="VHD88_08185"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HVS21813.1"
                     /translation="VRQPASLCGVVGVKPTYGRVSRYGLVAFASSLDQIGVFAQQAAD
                     AAAVLEIIAGRDRHDATTADVPVPNYSAELHRDMKGLRLGVARALLGEGLDDEVRAAV
                     ENAIDAYRALGAEIVDIELPYAKYAIAVYYVIATAEASSNLARYDGVRYGFRAEDAPA
                     LRDMYRKTRDEGFGPEVKRRIMLGTYVLSAGYYDAYYSKAQRVRTLIRQDFLKAFEKC
                     DAILTPTSPTPAFLFGEKVDDPLAMYLNDIYTVTANLAGVTGISVPCGLSSDGLPIGL
                     QLLGPYWSEALLLRLAHAYQQAHPLNAQPGIHA"
     gene            complement(1580..2173)
                     /locus_tag="VHD88_08190"
     CDS             complement(1580..2173)
                     /locus_tag="VHD88_08190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21814.1"
                     /translation="MPRSDRKPRTKRELMIEAWNRLGCAAVGARELREIQRAIQEQLG
                     EAAAASPAAIARVLADVGAELRHPEVIEFDARWRESQIESDAGELDAFSAGKPLRLKK
                     GEAFIKKLERLRKRSERAGDQRALRRVRELGISARQVAQSLTNNRALAEPVRAEQAEI
                     AEWLAVWIQTPNLFDEWLELRRRSPDFRKRFPTEKSS"
BASE COUNT          439 a          691 c          658 g          523 t
ORIGIN      
        1 cggtgcggca accggcttcg ttgtgcggag tcgtcggtgt gaaaccaacg tatggtcgcg
       61 tctcgcgcta tggactggtt gccttcgctt cgtcgctcga tcaaattgga gtgtttgcgc
      121 agcaggcagc agacgccgcg gccgtgttgg agatcatcgc cgggcgcgac aggcatgacg
      181 ctactactgc cgacgtgccg gttcccaact actcagccga actgcacaga gacatgaaag
      241 gtctgcgcct cggcgtcgcg cgcgcgttgc tgggcgaagg gttggacgac gaagtgcgcg
      301 ctgctgtgga aaatgctatt gacgcctacc gagcgctcgg cgcggagatc gtggacatcg
      361 aattgcctta cgcaaaatat gcgatcgcgg tttactacgt catcgcaact gcggaagcgt
      421 cgtcgaatct ggcgcgctac gacggcgtgc gttacgggtt tcgcgccgaa gacgctccgg
      481 cgctccgcga catgtatcgc aagacacgcg acgaaggctt tgggccggaa gtgaagcggc
      541 gcattatgct gggcacgtac gtgctttctg ctggttacta tgacgcctac tattcgaaag
      601 cacagagagt tcggacgctg atacgacaag actttctgaa agcgtttgaa aagtgcgacg
      661 caatcttaac acccacgtcg cccacacctg cgtttctgtt cggagaaaaa gttgacgatc
      721 cgctggcgat gtatctcaac gacatctaca cggtcaccgc gaatctcgcc ggcgttaccg
      781 gcatcagcgt gccttgcggg ctctcttcag acggactgcc gatcggtttg caactgctcg
      841 gcccttactg gagcgaagcc ttgctacttc gtctcgcgca cgcataccag caagcccatc
      901 cgctgaacgc gcagccaggc atccacgcat aatcgatcgg ttcaaccgaa aggagggatg
      961 cgcgccgctt ggcgtgcatc ccttgtcccg ctttccgctg cgagctgttt attcgagctg
     1021 acttatctcg ggcaacctcg gacgcagttt cgatgtgctt catttgccgc tcgctcacaa
     1081 gcagcgcggt ctgctcccgt ccggccgcga caggcacgga tcgcattctt gtgcgctcgg
     1141 ttgcagtcct taacgcagcg cttgtgatcc cggtgcctat tatttggaac aggcttgggc
     1201 ggcttcgcag gcttcgcctt aggcggctta tttggtttcg acgaaggcga aggcctcgct
     1261 ggagtcaccg gcctcgcggg ccttgacggt ggctgcacga tttcaggtcg tcctccaggc
     1321 ggaccgatct tggcaggtcc ctttcctttc ccctgtgcag ttgctactgt ggcgccacca
     1381 aacagcaata ttgctcctag caatactgac gcggcggcac ggtttagtgc agcaaaattc
     1441 caaatcatac aaatacctcc tcttcgctga atcaacactt tctggattca gaccgttttc
     1501 gagaacatca tccagaatta atttacctgg tggttgaacg cagcaaggag tatgcccccg
     1561 ttggctgagg agatgcaatt cacgaagact tttccgttgg gaatctcttg cgaaagtctg
     1621 gcgagcgccg gcgcagttca agccactcat cgaaaagatt cggagtttga atccacaccg
     1681 cgagccattc agcaatttcc gcctgttcgg cgcgcaccgg ctcagccagc gctcgattgt
     1741 tggtaagcga ttgcgcgact tgcctggcgc tgatgccaag ctcgcgcacg cgtcgcagcg
     1801 ctcgctgatc gcccgcgcgt tctgaacgct tacgcagcct ctccaatttc ttgatgaagg
     1861 cttccccttt cttgagccgc agaggcttgc ccgcgctgaa tgcgtcgagt tcaccagcat
     1921 cgctctcgat ttgtgattcg cgccagcgcg cgtcgaactc gatcacttct ggatggcgca
     1981 actctgcgcc gacgtccgcc aacacacgcg cgattgcggc cgggctggcg gctgcggctt
     2041 cgccgagttg ctcctggatc gctcgctgaa tctcgcgcaa ctcgcgtgca ccaaccgcgg
     2101 cgcatcccaa acgattccac gcttcgatca tcagctcgcg cttggttcgg ggtttcctat
     2161 cacttcgagg catttggcgt ccgccttccc tgcttttcca ggacaatata gaatcgggtg
     2221 cttctgggga agatgcttta agcgcgcgtc aggagtcaaa cgatgagaac cggttttcgg
     2281 tgcgacagac aaatcgcgat ggccataggt t
//
LOCUS       DASZZE010000427         5329 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_62924, whole genome shotgun sequence.
ACCESSION   DASZZE010000427 DASZZE010000000
VERSION     DASZZE010000427.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5329)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5329)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5329
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62924"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..428)
                     /locus_tag="VHD88_08195"
     CDS             complement(<1..428)
                     /locus_tag="VHD88_08195"
                     /inference="COORDINATES: protein motif:HMM:TIGR02098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21815.1"
                     /translation="MQLDEAKAPSQPFKVRCPKCQTSVSVQRPAASPEPVASEVFHLP
                     DTPAAAWASSPFERPAAAPPFKPDGEDQNADLPAQSPSIGMNDVAKLLAEALRHADSG
                     SSRSRGRKRPAWDRRKVLVCGSPAYREAIARSLPDQDYEV"
     gene            complement(501..1682)
                     /locus_tag="VHD88_08200"
     CDS             complement(501..1682)
                     /locus_tag="VHD88_08200"
                     /inference="COORDINATES: protein motif:HMM:TIGR01420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilT/PilU family type 4a pilus ATPase"
                     /protein_id="HVS21816.1"
                     /translation="MSFFDLPPIIERMLLVSDKISDLNFSVGQLPQVEINGKLTPVQP
                     LGLQKLTPYQTEIIAMTLLQENSEAAERLVRTGTADLSYSLPSRARFRVNVFQQRGVY
                     SIVMRVIPTDIPTLGSLNLPEQLAEVAELRNGLVLMTGPTGSGKSSTLAAIIDIINET
                     KHYHVVAIEDPIEYLHTHKNSTINQREVGNDTKDFPSALRAALRQAPKVILIGEMRDY
                     ETTEIALEAAETGHLVLSTLHTIDASKTIDRIIGLYPKNEEPIIRTRLTQTFRYIISQ
                     RLIPRADLRGRIAAVEILRSTPRTREYIENGETEGKSLLDAMRDGKLDGMQDFDTVIK
                     DLIERNIVNIEDGLGFATNQNNLLLALKGLTSSDDFIRSQAEPVVANQAGAPVAFSMT
                     D"
     gene            complement(1823..2473)
                     /gene="thiE"
                     /locus_tag="VHD88_08205"
     CDS             complement(1823..2473)
                     /gene="thiE"
                     /locus_tag="VHD88_08205"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR00693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004789 - thiamine-phosphate
                     diphosphorylase activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HVS21817.1"
                     /translation="MRLHLPKIYPITDTRLSGLSHSEQVARLIFGGATLIQLRDKHAA
                     PRDFYHAAKSALSIAREHRVRLIINDRVDVALALKADGVHLGQSDISADAARHLLGED
                     AIIGVSTHSITQAKLASTMPINYVGFGPIFKTETKENPDPVAGLDALRSVRAALGSLP
                     LVAIGGITPTNAREVFKAGADSVATIAGVLADPSKIAENTRRMLAEAQDSGLFRWV"
     gene            2498..2689
                     /locus_tag="VHD88_08210"
     CDS             2498..2689
                     /locus_tag="VHD88_08210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21818.1"
                     /translation="MSDSQSPNEKQDHLVPKSADKVEQNNATPPPKDYYYDDSTGYEV
                     YDSQDEASEDVGDADRKTV"
     gene            3009..3194
                     /locus_tag="VHD88_08215"
     CDS             3009..3194
                     /locus_tag="VHD88_08215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21819.1"
                     /translation="MKRYLGPVIKPGATHGAMVQTKSGNADDVQGHACGGTKPSDVTS
                     VRRYLRLHQRDINHENL"
     gene            complement(3280..3627)
                     /locus_tag="VHD88_08220"
     CDS             complement(3280..3627)
                     /locus_tag="VHD88_08220"
                     /inference="COORDINATES: protein motif:HMM:NF013234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannose isomerase type II C-terminal
                     cupin domain"
                     /protein_id="HVS21820.1"
                     /translation="MRESDERPWGRYEVLEERPGFKVKVLEVKPGARLSLQRHARRSE
                     HWVVVQGVADVVCGDGELQLRAGEHMHIPPQTNHRLGNSSDGPLAIIEVQLGDYLGED
                     DIVRLEDDYQRVE"
     gene            complement(4258..4956)
                     /locus_tag="VHD88_08225"
     CDS             complement(4258..4956)
                     /locus_tag="VHD88_08225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21821.1"
                     /translation="MNRHALRNIVHLGYGANPRSVVRNPKLKGERGYTLVALLALMSL
                     LALFALAAAPSVQQQAQREREKEAIFRGEQVAAAIRSYYRYRGLQGVQGVNALPTSMD
                     QLTEGIPEGTKKLQILRPEAARDPLSSSGEWRLIGPTSQDFAQFVQSLTVYSGGARPQ
                     TKSDFGALANLIPQLMNVLNTGSSSTAPGGEDTSANSTGPFLGVASRSQRNSVLTYYG
                     IDRHDGWIFTPLFR"
     gene            complement(5012..>5329)
                     /locus_tag="VHD88_08230"
     CDS             complement(5012..>5329)
                     /locus_tag="VHD88_08230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21822.1"
                     /translation="SDGKLYSNTATLTVTPPPLPNYNYIGLIGKPRFNDTAVLQKKGE
                     KDLINVQRGEVLEGRFRVTSISEREVVLVDTTLKIRHTIPFTVDNSNPQYRPPVRATD
                     DEP"
BASE COUNT         1186 a         1402 c         1537 g         1204 t
ORIGIN      
        1 aacacttcgt aatcttgatc tggaagcgag cgcgcaattg cctcgcgata agctgggctg
       61 ccgcaaacca ggactttgcg acggtcccat gcaggccgct ttctgccgcg acttctgctc
      121 gaaccgctgt cggcgtgacg cagtgcttcg gccaggagtt tcgctacgtc gttcatgccg
      181 atcgagggac tctgggccgg caagtctgcg ttttgatctt caccatccgg cttgaaagga
      241 ggcgccgccg ctgggcgttc aaagggagaa gaggcccaag cagcagcagg cgtatcgggc
      301 aggtgaaaaa cttcggaagc gaccggctcg ggtgacgccg cgggccgctg aacgctaacg
      361 ctggtctggc attttggaca acgaaccttg aacggttgtg atggagcctt agcttcatcg
      421 agctgcaaac gggcttggca tttcgggcag ataagaacca tggctgtctt tgaattgagt
      481 aggtcagcgt caatggcaac tcagtcggtc atgctgaaag cgacgggcgc gcctgcctga
      541 ttcgcaacaa caggttctgc ctgagaccga atgaaatcgt ccgaagaagt taggcccttg
      601 agcgccagca gcaaattgtt ctggttggtt gcgaacccga ggccgtcttc aatgtttact
      661 atgtttcgct cgatcagatc tttgataacg gtgtcaaaat cctgcattcc atcgagcttt
      721 ccgtcacgca tcgcgtcgag aagcgatttg ccttcggtct cgccgttctc aatgtattcg
      781 cgggtgcgtg gcgtcgatct caagatctcg actgccgcaa tgcgtccgcg aaggtcagca
      841 cgcggaatta gacgctgcga gatgatgtag cgaaaagttt gcgtcagtcg cgtgcgaatt
      901 ataggctctt cattcttggg atagagtccg atgatgcgat caatcgtttt cgaggcgtca
      961 atcgtgtgca aggtcgaaag gacaagatga ccggtctcgg cggcttcgag agcgatctcg
     1021 gtcgtttcgt agtcgcgcat ttcaccgatc aaaattacct tcggcgcctg gcgcagagcg
     1081 gcgcgcaaag ccgacggaaa gtccttggtg tcgttcccga cttcgcgctg gttgattgtt
     1141 gagttcttgt gcgtgtgcag atattcgatc ggatcttcga tcgcgactac gtgatagtgc
     1201 ttagtttcat taatgatgtc gatgatggct gcgagtgtcg agcttttgcc cgatccggta
     1261 ggtccagtca tcagcaccaa cccgttgcgc agttcggcaa cctcggcaag ctgctcgggc
     1321 aaattgagag agccgagcgt cgggatgtcg gttgggataa cgcgcatcac aatcgaatag
     1381 acgccgcgtt gctggaagac attgacgcga aaacgagcac gcgaaggaag cgagtagcta
     1441 agatccgcag tgccggtgcg taccaggcgt tccgccgctt cggaattctc ttgcagcaga
     1501 gtcatcgcga tgatctcagt ttggtaagga gtgagcttct gcagtccgag cggctgcacc
     1561 ggagtcaact tgccgttgat ctcgacttgc ggcagttggc caaccgagaa attcaagtcg
     1621 ctgatcttgt cagagaccag cagcatgcgt tcaatgatgg gcggcagatc gaagaagctc
     1681 atgccgagcg gcgctccatt caattagtgg caaaaggatt cgaggtcgca atcaacgtga
     1741 gggaagcagc agacttgccg cgcacgattt cgcggcggac ttattctcgc ttatggctac
     1801 gataaacgca agcaaaaaat gttcaaaccc aacggaaaag gcctgaatct tgggcttcgg
     1861 cgagcatgcg acgcgtgttt tccgcgattt ttgacgggtc ggcgagcacg ccggcaatgg
     1921 ttgctacaga gtcggcgccg gctttaaaga cttcgcgcgc gttcgtgggc gtgatgccac
     1981 cgatggcgac gagtggcaac gagccaaggg cagcgcgaac cgatcgcaaa gcatcgaggc
     2041 cggcgaccgg atccggattc tctttggttt cggtcttgaa gatgggcccg aagccgacgt
     2101 agttgatcgg catcgtcgag gcgagtttcg cttgcgtaat gctgtgcgtt gagacaccga
     2161 tgattgcgtc ttctccaagc agatggcgcg ctgcatcggc tgaaatgtcc gactggccca
     2221 aatgaacgcc atccgctttc aatgctagcg cgacatcaac gcgatcgttg ataatcaatc
     2281 gcacccgatg ctcgcgagct atagataagg cagatttggc cgcgtgatag aagtcgcgcg
     2341 gcgctgcgtg cttgtcacgt agttggatca gcgtggcgcc tccgaaaatt agccgagcga
     2401 cttgttcgga gtgcgacaat cccgaaagtc gggtgtcggt aattggatat atttttggaa
     2461 ggtgcagtct cacgcgactg aatcatgatt gatcacaatg agcgattcac aaagccctaa
     2521 cgaaaaacag gatcatctgg taccgaaaag cgccgataag gttgagcaga ataacgccac
     2581 gcctccgccg aaagattatt attacgacga ctcaaccggc tatgaggtat atgacagcca
     2641 ggacgaagcc agcgaagatg tcggcgatgc ggatcgcaag acagtctgaa ttggcttgag
     2701 gcaggttacg aagctcgatc cgagatgttg aaagcgcctg tctggcgcag cgcttcatac
     2761 agaacgatgg ccactgagtt tgccaggttc agactacgaa ctttggggtt gagcatcgga
     2821 atagtaaggc agcggtccca attttcccgc agaagatcct cctacaggcc gctggtctct
     2881 cggccaaaca ccaggcaatc gtcctggtcg aacagccact cagagtacga gtgcgcagcc
     2941 ttggtagaga agtaaacaaa ccgcgcgtca ggcaagaagc tgtgaagtgc gtctatgtcg
     3001 cgatggcgat gaagcgatac ctcggaccag taatcaagcc cggcgcgacg cacggcgcga
     3061 tggtccaaac gaaatccggc aacgccgacg atgtgcaagg gcacgcgtgt ggcggcacaa
     3121 agccgagcga cgttaccagt gttcggcggt atctccggct ccaccagcgc gacattaatc
     3181 atgaaaatct gtaggcttgg gccaatttga gagcgcgtct aacagatgtt ccagatgagg
     3241 ggcacctgag gaaagtgaca cggcaaacta ctaactattt cactcgactc tttgatagtc
     3301 atcttccagc cgcacgatgt catcctcgcc aagataatcg ccaagctgca cttcaatgat
     3361 tgcgagcggc ccatcgctgc tgttgcccag acgatgattg gtttgcggcg ggatgtgcat
     3421 gtgctcgccg gcgcgcagtt gcaactctcc gtcgccgcag acgacatcag ccacaccctg
     3481 aacgacgacc cagtgttcgc tgcgccgcgc atggcgctgc aagctaagtc gggcgccggg
     3541 tttcacttcg agcactttga ccttgaatcc tggtcgttct tccaggactt catagcggcc
     3601 ccatggtctc tcgtcagatt cacgcaccag ttaattcctc atcgcagagc aagattccgt
     3661 caagctgtga gtgagaataa tggacagtgg cgaggggcgc aataccaatc acgcgcgcga
     3721 cctcacaaaa aaatggaacg gcgcgcttga taagcattcg ccgttcctta ttgaaagggc
     3781 cttcaaggcc tcaaacgatg tgcgccactt gaacgtggtc gttgatgttc cctgagtgaa
     3841 cgagctatct cttctttgcg gacttcttgc cgcctttttt cttgccgccc ttcgcggcct
     3901 tcttcttagt tgccatattt ttctccttct ttagcttaca ggttgtgacc gcaagatagt
     3961 gtgtagcagt aactcttgtg gtctagagaa aacggcgcac aacatgttgc tatataaact
     4021 taattcaacc agatgtcaac aatttattac ttgtgaggtg aattattttc gcacgcggct
     4081 agcgagccga gacgctccac gcgaagaagt ttggcacgtg agtgaacaga tcgatcatca
     4141 ctttggatgc gcacgtgatc gaattcgatt tgcggcttga cgaggaaaga gtgacatgac
     4201 gatcgaagct gggaacgtcc aagtaagatg tcgcgatcgc aaagttgtcc ttgcaactca
     4261 tcgaaacaac ggcgtgaaga tccatccgtc gtgtcgatcg atgccgtaat aggtgagcac
     4321 tgagttgcgc tgactgcggc tggcgactcc caggaaaggc ccggtagagt ttgccgatgt
     4381 gtcttcgccg ccgggcgcgg tgctgctgga tccggtattg aggacgttca tcaattgcgg
     4441 aatcagattc gccagcgcgc cgaagtcact cttcgtttga ggacgcgcgc ctcccgaata
     4501 gacagttaaa gactgcacga attgggcaaa atcctgcgac gtgggcccga ttagcctcca
     4561 ctcgcctgag ctagagagtg gatcccgggc ggcttcaggg cgcagaatct gcagcttctt
     4621 ggtgccttcg ggaattcctt ccgtcaattg atccattgat gtgggcaagg cgttgacgcc
     4681 ctggactccc tgtaggcccc gatatctgta ataggagcgg atggccgccg caacttgttc
     4741 gccacggaag atcgcttcct tctcgcgttc gcgttgcgcc tgctgttgca cactcggcgc
     4801 ggccgcgagg gcaaacaaag caagcaagct catcaacgcg agcagcgcca ccagcgtgta
     4861 gccgcgctcg cctttcaact taggattgcg gactacggat cgcggattgg cgccgtatcc
     4921 caaatggaca atgttgcgaa gtgcatggcg gttcatgtct agcaaaatcc ttcttaagat
     4981 cccaatctga aatccgggat ccgcaactcc tttaaggttc gtcgtcggtg gctcgcacgg
     5041 gtggtctgta ctgcgggttg gaattgtcca cagtgaaagg aatcgtgtgt ctaatcttca
     5101 gagtcgtatc gaccaaaacg acttctcgct cagagatgct ggtaactcgg aaccgccctt
     5161 caagcacctc gccgcgctgc acgttgatca agtctttctc gcctttcttc tgcagcaccg
     5221 ccgtgtcgtt gaaacgcggc ttgccgatga ggccgatgta gttgtagttc ggcagcggcg
     5281 gcggcgtgac ggtcagcgtc gctgtgtttg aatagagctt gccatcgct
//
LOCUS       DASZZE010000428         2327 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_13891, whole genome shotgun sequence.
ACCESSION   DASZZE010000428 DASZZE010000000
VERSION     DASZZE010000428.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2327)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2327)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2327
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13891"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            175..1422
                     /gene="larA"
                     /locus_tag="VHD88_08235"
     CDS             175..1422
                     /gene="larA"
                     /locus_tag="VHD88_08235"
                     /inference="COORDINATES: protein motif:HMM:NF033504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050043 - lactate racemase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent lactate racemase"
                     /protein_id="HVS21823.1"
                     /translation="MSTIELGYGQGSITFDYDSVRFDVLAPDESGARPLSDAEIGAAL
                     DAPIESPPLEELVASGDSVLIVASDATRATGSPQIINLLVRRLIQNGIRPSDLAIIFA
                     TGIHRAVRPEEKAELLTPFIAQRIRTIDHDAYDASQLVDLDGGVAVNRALKDFPKVIL
                     TGAVGFHYFAGFTGGRKAICPGLASARTIEATHMLALDFERGGRRAGVGAGILDGNAV
                     NEECERVATMIDPVFLVNAIVDERGRTEQIFAGHWRAAHRRACDVYAAAHSRRISEKR
                     EVVIVSCGGTPYDVNMIQAHKALDMAAHACADGGTIILLAECGDGLGRADFLKWFESG
                     DSHALEARLRKEYEVNGQTAWALLTKTERFRVHIATQLAEDEVRLMGMVPAPSIEKAL
                     ANVPLDLKGHIMPRGAAVLPVVE"
     gene            complement(1609..2211)
                     /locus_tag="VHD88_08240"
     CDS             complement(1609..2211)
                     /locus_tag="VHD88_08240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21824.1"
                     /translation="MRFLKITIGLAFLLSCAIAVAAQQPAEQRAALNEAAVAFDAKGA
                     TALEARLSTTLLNGSQDSPVTNVRIVVKNTSANFYTYVTGWATFYDAGGVRCGEGLFK
                     LDALAPNESSEVDTPGLRLHCSPATWRIAANNLLTRTVETAKPIEAAPTPVEPAVVER
                     PAPVNFIISIDGEEHPIQLNNPIVLKLGTRNRKIVLRNAP"
BASE COUNT          498 a          657 c          685 g          487 t
ORIGIN      
        1 cgagcccccc gaagacatcg tagtggcggg gaatgatctc gaaaacctga gccggaattg
       61 tcatcgtcgt ttctcctcga atggcttggt aaaccaaggc tattctagac aaccgacctg
      121 acattcaaca tacatgtctc ctaaagggag agggaatagc cgtacttaac caccatgtcg
      181 acaattgaac tcggttacgg gcaaggctcg atcacgtttg actacgacag tgtacgcttt
      241 gatgtgctgg cgcccgacga aagcggagcc cgtccgctct cagacgcaga aatcggcgcg
      301 gcgctggacg ctccgattga atcgccgccg ctcgaagagc tagtggcgtc cggcgacagt
      361 gtgctgatcg tcgcttcaga cgcaacgcgc gccaccggca gcccacagat catcaacctg
      421 ctggttcgac gcttgattca aaacggaatc cgaccgagcg accttgcgat catcttcgcg
      481 actggaattc atcgcgcggt gcgcccggaa gaaaaagcgg aactgctcac gcccttcatc
      541 gctcagcgca tccgcacaat cgatcacgat gcttacgacg cctcgcaatt agtcgacctt
      601 gacggtggag tcgcggtcaa tcgcgcgctc aaagattttc cgaaagtaat tctgaccgga
      661 gcagtcgggt ttcattattt cgcgggcttc actggcggac gcaaagcaat ctgtccgggc
      721 ctggcttcgg cgcgaacgat cgaagcgacg cacatgctgg cacttgattt cgagcgcggc
      781 ggccggcgtg ccggagtggg cgcagggatt ttggacggca acgccgtgaa cgaagaatgc
      841 gaacgcgtcg cgacgatgat cgatccggtg tttctcgtga atgcgatcgt tgacgagcgt
      901 ggacgcactg aacaaatatt cgccggtcac tggcgcgcgg cgcatcgacg tgcatgcgac
      961 gtttacgcgg cggcgcactc gcggcgaatc tcagagaagc gcgaagttgt gatcgtaagt
     1021 tgtggcggca cgccttacga cgtcaacatg attcaggcgc acaaggcgct cgacatggcc
     1081 gcgcacgcat gcgccgacgg cggcacgatt attttgttag cggaatgcgg cgacggctta
     1141 ggccgtgcag actttctgaa gtggtttgaa tccggcgatt cgcacgcgct cgaagctcgt
     1201 ctgcgaaaag aatatgaagt gaacgggcaa actgcgtggg cgctgctgac caagaccgag
     1261 cgctttcgtg ttcacatcgc gacgcaactt gctgaggatg aagtgcgcct catgggaatg
     1321 gttcccgcac cctcgatcga gaaagcatta gcgaatgttc cgttggactt gaaaggccac
     1381 atcatgccgc ggggcgcagc ggtgttgccg gtcgtcgagt aaacgacact tggagtgcgt
     1441 cggcaaagtg aaacggcgct tgggattttt tccactctcc cgttgggaga ggggttaggg
     1501 gagaggggct gggcctggcg cacaagccct caccccaacc ctcccccaat cgggggaggg
     1561 agccgcgaag atccaaagca gcgtcgtgca ccgctgggca ctgcaaaatc acggagcgtt
     1621 ccggagcaca atttttctat tccgcgttcc cagcttcagc acgattggat tgttgagttg
     1681 aatcgggtgc tcttcgccgt caatgctgat gatgaaatta actggcgcag gtctttcaac
     1741 tacggctggt tccaccggcg tcggcgccgc ttctatcggc ttcgcggttt cgaccgtgcg
     1801 cgtcagcaga ttgttggctg cgatgcgcca cgtcgccggc gaacagtgca gacgaagacc
     1861 aggcgtatcg acttcggaag attcgtttgg cgccagcgcg tccagcttga acagtccttc
     1921 gccgcaacgc acaccgcccg catcgtaaaa cgtcgcccag ccagtcacgt aagtataaaa
     1981 gttggcgctc gtatttttca caacgattcg cacgtttgtc accggcgaat cttgagagcc
     2041 gtttagcaag gtcgttgaca gtcgcgcttc gagcgccgtc gctcccttgg catcgaaagc
     2101 caccgcggcc tcgttgagcg ccgcgcgctg ttcggcaggt tgctgcgcgg cgacggcaat
     2161 tgcgcacgac aacaagaatg ccagtccaat ggtaattttc aggaatctca cgtgaatctc
     2221 tccttctcca aatctggtca aagccttaca gcctgatgaa aaactccttc tccctttggg
     2281 agacatgtat gttgaatgtc aggtcggttg tctagaatag ccttggt
//
LOCUS       DASZZE010000429         1777 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_223718, whole genome shotgun sequence.
ACCESSION   DASZZE010000429 DASZZE010000000
VERSION     DASZZE010000429.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1777)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1777)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1777
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_223718"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(41..1360)
                     /gene="murA"
                     /locus_tag="VHD88_08245"
     CDS             complement(41..1360)
                     /gene="murA"
                     /locus_tag="VHD88_08245"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: protein motif:HMM:NF006873.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008760 - UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HVS21825.1"
                     /translation="MDKFCIRGGNAIKGRVAISGAKNSALPCMAAAILTPETVTLHNL
                     PYVRDIITQRRLLEDIGAHVLTPELRTHKISAAHVELFEAPYKLVKTMRASVLALGPL
                     LARFGKAKVSLPGGCAIGARPIDLHLAGFEKLGAEVMLESGDVVARAPKDGRLVGAEI
                     SFEKVSVTGTENLMMAATLARGTTTIHNAAREPEVSDLAELLNKMGARVRGAGTPTIQ
                     IEGVDALGGAEHTIIPDRIETGTFIVAAAITKGELEIKDCQPDHCVGVIAKLREVGVE
                     IEEVNQSTLHVRRSARGLKASDLITEPYPRFPTDMQAQYMALMTQAAGRSVISETIFE
                     NRFMHASELQRMGARIQIGLDKATVDGPTKLTGARVQASDLRASASLVLAGLVAEGET
                     TIDRVYHIDRGYEKIETKLKAVGADIERVRESVTAPLPSREEDTAAA"
     gene            complement(1437..>1777)
                     /locus_tag="VHD88_08250"
     CDS             complement(1437..>1777)
                     /locus_tag="VHD88_08250"
                     /inference="COORDINATES: protein motif:HMM:NF013375.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HVS21826.1"
                     /translation="PAFRAIETRALQVVLEKNAARVIALGGGAWTIEANRALVAQHDC
                     LSVWLDAPFELCWERILSSGTIRPLAPERESAHQLYQSRRASYELAELHVDSRHDPVA
                     EIARLGSSSD"
BASE COUNT          360 a          544 c          502 g          371 t
ORIGIN      
        1 tggctgcata atatcacaca gtttgaatca gcttttcaat tcacgcggcc gcggtgtctt
       61 cttcacgaga aggcagcggc gcggtaactg actcgcgcac gcgttcgatg tccgcgccca
      121 ccgctttcag cttcgtttca atcttttcat aaccgcgatc gatgtgatag acgcggtcga
      181 tcgtggtctc gccttcggcc accaaaccgg ccaggaccag cgacgcagag gcgcgcaaat
      241 ccgacgcctg cacgcgcgcg ccagtcaatt tagttgggcc atcaacagtc gctttgtcga
      301 ggccaatctg gattcgcgcc cccatgcgct gaagttcaga agcatgcatg aaacgatttt
      361 caaagatcgt ttccgaaatc accgagcgac ctgcggcctg tgtcatgagc gccatgtact
      421 gcgcctgcat atcggtgggg aaacgcggat aaggctccgt aatcaagtcg ctcgctttca
      481 atccgcgcgc gctgcggcgg acgtgcaagg tgctctggtt gacctcttcg atctcgactc
      541 cgacttcgcg cagcttggcg attacgccga cgcaatgatc gggctgacaa tctttgatct
      601 cgagttcgcc tttggtgatc gcagcggcca cgatgaacgt tccagtttcg atccggtctg
      661 gaatgattgt gtgttccgcg ccgcccaaag catcaacgcc ttcgatttga atcgtcggcg
      721 tgcccgcgcc acgaacgcgc gcgcccatct tgttcagaag ctcggcgaga tcgctgactt
      781 ccggctctcg cgcggcgttg tgaatcgtcg ttgtgccgcg agccagagtg gcggccatca
      841 tcaagttctc ggttccagtc actgaaacct tttcgaaact aatctcagcg ccgactaatc
      901 ggccgtcctt cggggcgcgc gcgacgacgt cgccggattc caacatgacc tccgcgccga
      961 gcttttcgaa accagcaaga tgaagatcga tcggccgcgc gccaatggca cagccacccg
     1021 gcaaggacac ttttgctttg ccgaaccgcg ccagcagagg gccgagcgcc aacaccgacg
     1081 cgcgcatcgt cttcaccaac ttatacggcg cttcgaataa ctcgacatgt gcggccgaga
     1141 ttttgtgcgt gcgcagttca ggcgtgagca cgtgcgcgcc gatgtcttcc aacaggcgac
     1201 gttgcgtgat gatatcgcgc acgtagggga gattgtgcag cgtgacagtc tcaggcgtca
     1261 ggatcgccgc agccatgcac ggcagcgcgg agttcttagc gccgctgatc gcgacgcggc
     1321 ctttgattgc gttgccgcca cgaatgcaaa acttgtccac gggggaagat taaaggaaaa
     1381 gttacagaac cgcgagcgat agcgagcagg taaacccacc agtgtacgcg acgctttcaa
     1441 tctgaactag aaccaaggcg cgcgatttcg gcgaccggat cgtggcgcga gtcaacatgc
     1501 agttcggcta gctcatagct tgcgcgtctc gattgatata gctggtgcgc actttctcgt
     1561 tccggcgcga gcgggcgaat cgttccgctc gacaggattc gttcccagca aagttcaaat
     1621 ggcgcatcga gccagacgct caggcaatca tgctgtgcga ccagcgcgcg gttggcttct
     1681 atcgtccacg cgcccccgcc aagcgcaatc acgcgcgcag cattcttttc cagaacaact
     1741 tgcaacgccc gcgtttcgat cgcacggaat gccggct
//
LOCUS       DASZZE010000430         4621 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_275511, whole genome shotgun sequence.
ACCESSION   DASZZE010000430 DASZZE010000000
VERSION     DASZZE010000430.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4621)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4621)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4621
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_275511"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..926)
                     /gene="dnaX"
                     /locus_tag="VHD88_08255"
     CDS             complement(<1..926)
                     /gene="dnaX"
                     /locus_tag="VHD88_08255"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF004046.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HVS21827.1"
                     /translation="MAYQVIARKWRPQKFEDVTGQEVLTRTLQNSIEHGRLHHAYLFS
                     GVRGVGKTTTARLVAKALNCHKSDKPTATPCATIDETTCASCREIAEGRSMDVLEIDA
                     ASNTGIDNVRDVIITNIGIKPARDRFKVFIIDEIHMLSDKAFNALLKTIEEPPPNVVF
                     IMATTEEHKVPETIASRCQLFEFRAIATAKIAERLRLIADAEKISIAGEAIREIARAG
                     EGSMRDAQSAFDQVISFAGEKIKTEDVEKALGIAGADVLARVINAIAENKPAEALAIV
                     DDIVMRGHNLRNFCRDVLGHLRDLLVVKVSGDP"
     gene            complement(963..1661)
                     /locus_tag="VHD88_08260"
     CDS             complement(963..1661)
                     /locus_tag="VHD88_08260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21828.1"
                     /translation="MKRILTSTLIALFTFAVFGVTAFAQSPTLENLLKEVQSRREELT
                     ALERTLVAPSEEDRTAYATLLRQPDTGIIRLIPRENKLTIGGAYYSFSRLTHEYGYGS
                     DIALEQDSLSVGFAGADYGMLTNLGDVSLDEITLEHPSVRFLSEYVPANKELDARSEH
                     RRFSNGETIGGVPNRNRLPVEVKTTYLLRSIDYDTTDVLVAFRVVRKDIDRSFIIVWK
                     LLKKYPKPELARSN"
     gene            complement(1726..1824)
                     /gene="ffs"
                     /locus_tag="VHD88_08265"
     ncRNA           complement(1726..1824)
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="VHD88_08265"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            complement(1871..2389)
                     /locus_tag="VHD88_08270"
     CDS             complement(1871..2389)
                     /locus_tag="VHD88_08270"
                     /inference="COORDINATES: protein motif:HMM:NF014389.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HVS21829.1"
                     /translation="MDDDKLAIEEARRAGQHGSVKSQVEGEVQAEIAERAASQAAPES
                     ERIDQVAGEFRAKAVTEVVQTEREVGRARGVARVSQVVDYIFYVIYALLALRFLLALL
                     AARSEAGFVRFIVTVTNPFYEPFRGIVASPRTDGGHTLMVPLVIAIIVYLLLHLGING
                     LLRMFAHRKTAV"
     gene            complement(2433..2522)
                     /locus_tag="VHD88_08275"
     tRNA            complement(2433..2522)
                     /locus_tag="VHD88_08275"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2486..2488),aa:Ser,seq:gga)
     gene            complement(2612..2701)
                     /locus_tag="VHD88_08280"
     tRNA            complement(2612..2701)
                     /locus_tag="VHD88_08280"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2665..2667),aa:Ser,seq:cga)
     gene            complement(2760..3347)
                     /gene="tadA"
                     /locus_tag="VHD88_08285"
     CDS             complement(2760..3347)
                     /gene="tadA"
                     /locus_tag="VHD88_08285"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: protein motif:HMM:NF008113.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008251 - tRNA-specific adenosine
                     deaminase activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0002100 - tRNA wobble adenosine to inosine
                     editing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HVS21830.1"
                     /translation="MLDTHISDTYSWPSLFEAMFSAAENGSATESPGELLTHERWMRE
                     ALRAALEAGAAGEVPVGTCIVVGDEILAVAGNRTRTDCDPTAHAEIVALREAARKLGN
                     YRLADAVVYSTIEPCAMCAGALIQARVNALVYGATDERAGAVESHFHICDADQLNHRL
                     KVVKGVLEDECRALMQEFFRSRRQGKDEGKTMNDE"
     gene            3548..>4621
                     /locus_tag="VHD88_08290"
     CDS             3548..>4621
                     /locus_tag="VHD88_08290"
                     /inference="COORDINATES: protein motif:HMM:NF021539.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2270 domain-containing protein"
                     /protein_id="HVS21831.1"
                     /translation="MAIVTDSTQAGADQLRTDSGAHDTQVPTRAAQRSTASSTRDPTI
                     SILSGERATGRLRPVSSASLHESVAPDRQSAQSPDATRKVSPSEFNTAMAHFYRGEVQ
                     RSNAWRTRLDTTTYWAVFTSAATLSFAFSSANNPHFLIPINSILVAIFLVMEARRYRY
                     YEIWASRVRVIETGYLAQILAPDAVPRDQEWASHLASDLLTPHFTISEWEAIGRRLRR
                     NYIWIFMLLALSWNLKVYLYPAAAANFDEFLQRATVGLVPGWIVFIVGFIFNAALLIF
                     AVGTIRLREATGEVLPRHEFSLHPLQRVTSWTRAAASSGGRATVRRAKRARHRLRGGA
                     TGEFKKTDITQTPDRRSGVRGQGS"
BASE COUNT          980 a         1324 c         1248 g         1069 t
ORIGIN      
        1 ggatcgccgg atactttcac gaccagcaga tcgcgcaggt gtccgagcac gtcgcgacag
       61 aagttgcgca ggttgtgtcc gcgcatgacg atatcgtcaa cgatcgccaa agcctctgcg
      121 ggtttgttct cggcgatggc attgatgacg cgcgccagca cgtccgcgcc ggcgattccc
      181 aatgctttct cgacgtcttc ggtcttaatt ttctcgcccg caaagctgat tacctgatcg
      241 aaagccgact gtgcatcgcg catcgaacct tcgccggcgc gcgcgatttc gcgaatagct
      301 tcgccggcaa tcgaaatctt ctcggcgtcg gcaatcaggc gcagccgctc ggcaatcttg
      361 gcggtagcga ttgcgcgaaa ctcgaagagt tggcagcgcg aagcaatcgt ttcaggaacc
      421 ttgtgctctt cggtggtcgc catgatgaag actacattcg gcggcggctc ttcgattgtc
      481 ttcagcaatg cattgaaggc cttatcagac agcatgtgta tttcatcgat gatgaagacc
      541 ttgaatcggt cgcgcgcggg tttgataccg atatttgtga tgatcacgtc gcgaacattg
      601 tcgatgccgg tgtttgacgc cgcgtcgatt tccaatacat ccatcgaacg accttcggcg
      661 atttcgcgac atgaagcgca cgtcgtctcg tcaatcgtcg cgcacggagt cgcggtgggt
      721 ttgtccgact tgtgacagtt gagagctttg gcaaccagac gagcagtggt cgttttgccg
      781 acgccgcgca cgcccgaaaa aagataagca tgatgaagac gtccgtgctc gattgaattc
      841 tgaagcgtcc gggtcagaac ttcctgcccg gttacgtctt cgaatttttg tgggcgccac
      901 ttgcgcgcga ttacctggta ggccatgaaa gtattttgga tttgagattg ccgatttgcg
      961 atttagttgc ttcgcgccaa ctctggcttg ggatatttct tcaagagttt ccaaacaatg
     1021 atgaaactac ggtcaatgtc ttttcggacg actctaaacg cgacaagtac gtccgttgtg
     1081 tcgtagtcga tcgagcgcag cagataagtc gtcttcactt ccacaggcag cctattccgg
     1141 ttgggtacgc cgccaatcgt ctctccgtta gaaaatcgcc gatgctccga acgagcgtct
     1201 aattccttat tcgctggaac atactctgaa agaaatcgca cgctcggatg ctccaacgta
     1261 atctcgtcca aggatacatc cccaagatta gtcaacatcc cataatccgc gcctgcgaaa
     1321 cccacggaca aagaatcctg ctccagggcg atgtctgagc cgtaaccata ttcgtgcgta
     1381 aggcgactga acgaatagta agccccgccg atcgtcagct tattctcgcg tgggatcagc
     1441 cgaataatgc cggtatcagg ctgacgcaga agtgttgcat aagcagtccg atcttcttca
     1501 gatggagcca ctagggtcct ctcgagggcg gtcagttcct cccgtcggga ttgtacttcc
     1561 ttcaaaaggt tctcaagcgt cggggattga gcgaaagcgg ttacaccaaa aaccgcgaac
     1621 gtgaaaaggg cgatcagcgt gctggttagg attcgtttca tttcgtttac tcctttgttc
     1681 ctgcccggga atctgtagcc aactcaatgt cccggaaatc tggtcagact tcggacttac
     1741 ccgcaacaca cgcagccgtt gctaccgttg ctccgttccc ggcctggcgg ggttcacaaa
     1801 gcgagcgttg tgcggagccc gaagtctgat aagccattgt caattggcga ctggcgattt
     1861 gcaaattgac ctaaaccgca gtcttacgat gagcgaacat gcgcaacaat ccgttgatgc
     1921 cgagatgcaa caagagataa acgatgatcg caatcaccag cggcaccatt aatgtgtgac
     1981 cgccgtccgt tctcggactg gcaacgatcc ctcgaaaggg ttcatagaat ggattcgtca
     2041 ccgtcacgat gaaacgaacg aatccggcct cgcttctggc tgccaacaaa gcgagtaaga
     2101 accgaagcgc cagcaacgcg taaatcacat aaaagatgta atcgacaact tgcgagacgc
     2161 gcgctacccc acgcgcccgt ccgacttcgc gttcggtctg gaccacctcg gttaccgctt
     2221 tagcgcggaa ttcaccagcg acctgatcga ttcgctcgct ttccggcgcc gcttgagacg
     2281 cggcacgttc ggcgatctct gcctgcactt caccttcgac ctgcgacttg actgagccgt
     2341 gttgccctgc ccgtcgtgct tcttcgattg ccagtttgtc gtcgtccata tctgcctcct
     2401 gaccatttgt ctaaatgctg ttaacggttc gatggcggag agggtgggat tcgaacccac
     2461 ggaacggttc cccgttcaca gcatttccag tgctgccaat tcaaccactc ttgcacctct
     2521 ccccggagtg ataagtgata ggtgataaga agaactcccg ttatgcagat tgaacttatc
     2581 acttgtcact aatcacttat cactgcgttc atggcggaga gggtgggatt cgaacccacg
     2641 gtgggcgtaa acccactccg gttttcgaga ccggtgcact aatccactat gcgacctctc
     2701 cacaaaagca agtatgaact atgaacgcgg aaggatgaac ttgagcaaga agcaaaacct
     2761 cattcatcgt tcatcgtttt cccttcatcc ttgccttgtc gccgcgagcg aaagaattcc
     2821 tgcatcagcg cgcggcattc atcttccaaa actcctttga cgactttgag gcgatggttc
     2881 aactggtccg cgtcgcagat gtgaaaatgc gattcgactg cgcccgccct ttcgtcagtc
     2941 gcaccgtaaa cgagcgcatt gacgcgcgct tgaatcagcg ctccggcgca catcgcgcac
     3001 ggctcgatgg ttgagtaaac caccgcatcg gcgagtcggt aattgccaag cttccgcgca
     3061 gcttcacgca gcgcaacgat ctctgcatgc gcagtcggat cgcaatccgt tcgggtgcga
     3121 ttgcccgcta ctgccaggat ctcatcgccg acaacgatgc acgtcccgac cggaacttct
     3181 ccggccgcgc cggcttcgag cgcggctcgc agggcttcgc gcatccagcg ttcatgcgtc
     3241 agcagctcgc ctggtgattc agttgccgat ccattttctg cggcagaaaa catcgcttca
     3301 aacaacgaag gccaactata ggtgtcgcta atatgagtgt caagcaacgt ctttttgagg
     3361 tgtctcgttt gtaagatcaa gcaccatgca tctgtctgag tgcagcgatc atcatgagca
     3421 cgacatcgca gatcaaagct gagcatgaac ggcggattcg attttttgcg cgctgattac
     3481 aggcgattcc gtgttattat ctccgcggtt tcgcgggcag cccacacccg ccagtttgcg
     3541 acccgtcatg gcgattgtta ccgactcaac tcaagcaggc gctgaccaac tgcgaaccga
     3601 cagcggcgct cacgatacgc aggttccgac gcgtgcggcg cagcgctcga cggcgagttc
     3661 gacgcgcgac cctacgatct cgatcttatc tggcgagcgc gccactggac gtctgcgccc
     3721 ggtgtcgtcc gcatcgctgc acgaaagtgt cgcgcctgat cgacagtcgg cgcagtcgcc
     3781 cgacgcgacg cggaaagttt cgccgtcaga attcaacacc gcgatggcgc acttctatcg
     3841 cggcgaggtg caacgctcaa atgcctggcg cactcggctc gatacgacga cttattgggc
     3901 cgtgtttacg tccgccgcga cactttcatt tgcgttcagt tcagcgaaca atccgcactt
     3961 tctcattccc atcaactcga ttctcgtggc catctttctg gttatggaag cgcgacgcta
     4021 tcgttattac gaaatctggg caagccgtgt gcgagtaatt gaaaccggct atcttgcgca
     4081 aatacttgca cccgacgctg tgcctcgcga tcaggagtgg gcatcgcacc tggcgtccga
     4141 tttgttgacg ccacatttta cgatcagcga gtgggaagca atcgggcggc gtttgcggcg
     4201 taactatatt tggatcttca tgctactggc gctgagctgg aatctcaagg tctatctgta
     4261 cccggcggcg gcggcgaatt tcgatgagtt ccttcagcgt gccacggtgg ggttagttcc
     4321 gggctggatc gttttcattg tagggttcat ttttaacgct gcgctgctca tcttcgcggt
     4381 cggcacgatc aggttacgcg aagcgaccgg cgaagttttg ccgcgtcacg aattttccct
     4441 gcacccgttg cagcgcgtga caagttggac gcgggctgcg gcctcgtcag gcgggcgcgc
     4501 gaccgtgcga cgcgccaagc gcgcgcggca ccgcttgcgt ggcggcgcga ccggcgaatt
     4561 caagaagact gacatcacgc agacgccgga tcgccggtca ggggtcaggg gtcaggggtc
     4621 a
//
LOCUS       DASZZE010000431        11736 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_174767, whole genome shotgun sequence.
ACCESSION   DASZZE010000431 DASZZE010000000
VERSION     DASZZE010000431.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 11736)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11736)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11736
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174767"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(279..620)
                     /locus_tag="VHD88_08295"
     CDS             complement(279..620)
                     /locus_tag="VHD88_08295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21832.1"
                     /translation="MPRIAIAAISLAVLFSTSVELWARASDGTTNAGTVISNRAEATY
                     TDDAGENYNTVSPTVTVTVLAIATVVVTPDETAPSDTTAPHERITRVFRICNTGNNAD
                     TFTVTLADLNL"
     gene            862..2025
                     /locus_tag="VHD88_08300"
     CDS             862..2025
                     /locus_tag="VHD88_08300"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF022137.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent rRNA methyltransferase"
                     /protein_id="HVS21833.1"
                     /translation="MATVKITTRGAKRIRNGHLWVYSSDVRDAHDASGGAIVRAVDEA
                     GNFVGQAFYSDRSQIALRFLTTREETIDREWWRARLRESAERRAGIARETNAYRLVYS
                     EADLLPSLIVDAYDNIFVMQTLSQGAEQLKGAIAELLIEGFNPRAIVERNDARVRELE
                     GLELRTGVLHGEAPEEVEINQHGVRFSISPLGGQKTGAFLDQRENYLAAKRVAHGRAL
                     DCFTCNGGFAMHIASACESVLGIDISADAIAGAQRNAELNDARNVEFRAANVFDALRE
                     METAGERFDTIVLDPPAFAKNRASLSSAARGYKEINLRALKLLNLGGVLVTCSCSYHV
                     TEEMFLGLIAGAALDAHRRVQLVEKRGQSGDHPVLLGVPETHYLKCVIARVIS"
     gene            complement(2035..3204)
                     /locus_tag="VHD88_08305"
     CDS             complement(2035..3204)
                     /locus_tag="VHD88_08305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21834.1"
                     /translation="MKAKTVAVALVVACLLANSSASAQQSSTEPTLLALEVRFYPKEP
                     PAYQAVPSSSPNAAWYARFHRIRATAPSDLPPVDAVNIKSATAGDGVRVWISVFFREL
                     HEQQKDIAAYTLHEGEKISARELAQFGVDPFDISVVKFSPDAFDLPEVISKARSIDYV
                     AIQPNISTLPSYRVAVRNLSGKNVRALSIQVLKSGQTQLSSMPQGKEGAPLILVGDAF
                     EFNARVATRSSPTPTGYAPVTLPNQVIEISTAIFEDGSFEGDSEPALTYRAFVKGNKI
                     QLRRVVGLFRRAIEDERSDPLAMLELLKSNIATLSLEADSVAAQEVLSELGQPVKKNG
                     QQVKSMIEVAMRGIQKDALDQAQQFQLRNPKPDPVSFHSWLVASQQRYEAWLSRL"
     gene            complement(3240..6404)
                     /locus_tag="VHD88_08310"
     CDS             complement(3240..6404)
                     /locus_tag="VHD88_08310"
                     /inference="COORDINATES: protein motif:HMM:NF027232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21835.1"
                     /translation="MKDTRRSVRELGGLLAAFCGLVSVAMVLGALATHAANPVPTQTP
                     AAAQSPSPARSVPATPVPSPTPTPINWSSDPMLKRFVWRGIGPASMGGRIDDIAAVDS
                     NPYIYYVGAATGGVWKTTNNGTTFTSIFDTYSTASIGDIAIAPSNPDIVWVGTGEANN
                     RQSSSFGDGIYKSTNAGKTFTKMGLENSQTIARIVIDPKDANVVYVAVLGHLFGPNKE
                     RGIYKTTDGGKTWNNIKFIDENTGFTDLVIDQSDSKTLYAASYQRRRTSWGFNGGGPG
                     SGLWKTTDAGKTWTRIQGAGFPEGLLGRIGIDVSRSNPNILYAQIEVGASTGTGGEEQ
                     AGASPTPTPSPSATPAVSPTPDPKKSGVWRSDDKGKTWRVVSTCFNAGGCTENNRPMY
                     YSQIRVDPSNPENVFVGGLNFSRSTDGGKTFKSLQPGIAHSDHHACWIDPKNGNHLLI
                     GNDGGLDVTYDQGDTWEFINTIVASQFYAVAADMRKPYYVYGGLQDNGSWGGPSQTRS
                     GAGITNADWFRTGGGDGFYSQADPTDYNTVYSESQNGSMSRLDLRTGRSVSIRPRAAP
                     RRPGGGGGGAGAGGGSGRRAGGQGAGASPSPSPEATTQDPAAALAALAAAQGFGGFGA
                     GNFAASNVVPVPSPGEQFRFYWNTPIVISPHNPRILYVGGDRFFKSLDRGDTWTASAD
                     LTRHVDRNTLSIMGVSGKNPMASKNDGYTSFGYVVTIAESPVLPGVLWAGTDDGNVQV
                     SRDGGATWTNVAKNVPGIGDMYHITRVEPSHFDAATCYLSVDGHRFDDLKPYVFVTRD
                     YGQTWTSITSNLPSWGNVNVIREDPKNKDLLYVGTEFGMFISLDAGKEWKEFMSGLPR
                     IRVDDILVHPRDNDLIIGTHGHGIYILDDITPLQQLSSSKAMDKDEFLFDVRPGTQWL
                     NDPRLNRYTGGAKFYRGANPQPGTAISYYLKSAPGGDVKITISDYTGKVIRTIVGTKD
                     PGINRMQWNLRGDPPPRPANLPPGFGGGGGGGGGGGGGGGGFGGFFNVGPVIDPGTYN
                     VKLSVNGKDYTTKAVVEADPGISP"
     gene            6769..7392
                     /gene="lexA"
                     /locus_tag="VHD88_08315"
     CDS             6769..7392
                     /gene="lexA"
                     /locus_tag="VHD88_08315"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: protein motif:HMM:TIGR00498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor LexA"
                     /protein_id="HVS21836.1"
                     /translation="MLPRTQRQKEVLDYITRFLAKHGHEPSYAQIARNFGVSSKATIA
                     KHISALEKRGLIKREHKPGRFTLAVKFEEAPANATCEVALLGRIAAGAPIDAIEDIEM
                     ICVPRFLLGRVRPERVYALRVKGDSMIDEHICDGDIALIENRTDAHDGEIVVALIDCA
                     RATLKRLFRFGEEVELRPANSQMNALRVHGSRVEIQGIFRGLLRPNA"
     gene            complement(7485..8579)
                     /gene="ligD"
                     /locus_tag="VHD88_08320"
     CDS             complement(7485..8579)
                     /gene="ligD"
                     /locus_tag="VHD88_08320"
                     /inference="COORDINATES: protein motif:HMM:TIGR02779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003910 - DNA ligase (ATP) activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="non-homologous end-joining DNA ligase"
                     /protein_id="HVS21837.1"
                     /translation="MARKPAQPGKQAARKRPARTSGGALPEVCGRARPTTMPAIIHPM
                     LATLVDEPFSNSEWIFETKWDGFRAVCFVQNGSARFVSRNQLDMTHQYPEFMDVGNQI
                     KAKEAILDGEIVALDRDGMPRFQLLQPRVGRKKKSDIEALLGKAKIVYYVFDLLYADG
                     HDLMSCSVVERKTALENILRPASFIKLSEHITGDGEAFFEQIEKFHLEGMMAKRAASP
                     YVQRRSADWLKVKTVQRSEVVIGGYTQPRGSRSHFGALVVGLFRGGELHYVAHVGGGF
                     NQRRLTEIYKLMQPLRTKQSPFIVTPKTNEPVQWLKPKLVAEVKFSEWTADDHLRHPV
                     FIGLREDKRLEECRFEFQRTAEKVVGRKGR"
     gene            8632..9219
                     /gene="mug"
                     /locus_tag="VHD88_08325"
     CDS             8632..9219
                     /gene="mug"
                     /locus_tag="VHD88_08325"
                     /EC_number="3.2.2.28"
                     /inference="COORDINATES: protein motif:HMM:NF007570.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000700 - mismatch base pair DNA
                     N-glycosylase activity [Evidence IEA];
                     GO_process: GO:0006285 - base-excision repair, AP site
                     formation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="G/U mismatch-specific DNA glycosylase"
                     /protein_id="HVS21838.1"
                     /translation="MTCKASATPGSARFKPTKAQLIAAAGKTVPDVIAPDLHVLFCGI
                     NPGLYTAAVGHHFARPGNRFWPALHKSGFTNRLLSPFEEDELLKHGLGITNVVARTTA
                     TAAELTKQDYVKGGDALRAKVRRYQPRILAVLGVGAFREAFTQPKALLGEQKDRLGDA
                     RVWVLPNPSGLNANYQLPDLVKLFRELRAATSRMN"
     gene            9319..9471
                     /locus_tag="VHD88_08330"
     CDS             9319..9471
                     /locus_tag="VHD88_08330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21839.1"
                     /translation="MIRKLKSSKYRLYSRKKDPKTGKRRNLGTFDTPTAAEKHEREVQ
                     YFKRKG"
     gene            9475..>11736
                     /locus_tag="VHD88_08335"
     CDS             9475..>11736
                     /locus_tag="VHD88_08335"
                     /inference="COORDINATES: protein motif:HMM:NF024754.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HVS21840.1"
                     /translation="MDFLAHLNAQQREAVTSTDGPLLILAGAGSGKTRVIACRITYLI
                     GERGVWPRNILAVTFTNKAAEEMRNRVSKLIEGLELGSAPLISTFHSLCVRILRRDIE
                     ALKAGYTRSFTIYDQDDAVRLTRNCIRDLGLDERQLTPRSVQGAISAAKNRGEDAEAF
                     AAQAQFIDERRASIAQIFKLYEERLHKNNALDFDDLLIKTVRLLRDVPEVREGYNDRF
                     RYLLVDEYQDTNSLQFSLIRLLTEKQQNICVVGDPDQSIYRWRGADIKNILQFEEHFP
                     SAKVIRLEENYRSTQNILDVASGVIKHNVERKEKALWTENPRGELIRYFQALDAESEA
                     RFVAGKIEAHLAAEPEIRAAVLYRTNSQSRVFEEAMRRASLSYNIVGGFSFYERMEVR
                     DIIAYLKLALNPYDSIALQRVINTPPRGIGKMTLDEIETRTREMGISYWEAISDLIQD
                     ERRLSARAIASLTNFQRIVNGLAAKVGSVVRGGSPTVRAGSEEQIESTSPVSDLVKAA
                     ILDTGYENALKAENDDEAEARLENLQELVNAAVDYDEQGAEGLREFIDHSALVSDTDQ
                     YKGDVPVTLMTAHSAKGLEFPLVFIVGLEDGLFPHSRSLSDSSDIEEERRLCYVAMTR
                     AEKYLYVTHAVKRRVYGEELASEPSQFLNEMPLELIEDLSRGRSWLSFARGSKSVPRE
                     AGSLEYENEESANGDGEPSLTDEHQQSGRHSARNPAKKYAGKTYDSVESVEEFFRKRT
                     AKLVGYRTASGSDR"
BASE COUNT         2523 a         3268 c         3360 g         2585 t
ORIGIN      
        1 gaagccgccg caaggcggct tctgtgtttc ctcatgaaag tcaacgttta catcgacggc
       61 ttcaatcttt actacggcgc tttgaagcgc acgccgtatc gttggctgaa catcacggag
      121 atgtgcaggc tattgttgcc gcaagatcag atctttcaga tcaaatactt cacggcgtta
      181 gtcaatcctc gccggtcaga ccagatcagc gatcccggca agagactttt ctccgcgcac
      241 tacgattccc aatctctcga tcatctacgg cttctttctt acaggtttaa gtcggcgagc
      301 gtgactgtga acgtgtccgc gttgttgccg gtgttgcaaa tgcgaaagac tctcgtaatt
      361 cgctcgtgag gcgcagtcgt gtccgaaggc gcagtctcgt cgggtgtgac cactacggtc
      421 gcgatcgcca gcaccgtgac cgttacagtc ggtgagacgg tgttgtagtt ctctcccgcg
      481 tcgtcggtgt aagtcgcttc cgcgcgattc gagatgacag tgcccgcgtt cgtcgtgcca
      541 tcagacgcgc gcgcccataa ctcgactgac gtgctgaaca gaacagccag cgaaatggca
      601 gcaatcgcga ttctgggcat gcatcatgcg ccgaactaat tcgacgatgg tttgcagcgt
      661 ggacacgctc tcgggtcggg gtgtggcggg tgttcagcag gtgcggccat cagggcgatt
      721 cgatagcgac tccttgcttt aaaaccacag aatgaacgaa cgatcctttc tatgcgtaaa
      781 acggctcgcg gtctactaat tagttgtctt tcaactcatt tgtcattacg gtcaatggtt
      841 tgtggtaact tcggggtcgt aatggccaca gtaaagatta caacgcgcgg cgcaaagcgc
      901 attcgcaacg gtcacctgtg ggtatatagc agtgacgtgc gcgacgcaca cgacgcgtca
      961 ggcggcgcga ttgtgcgcgc ggttgacgag gcgggaaact tcgtcggcca ggccttctat
     1021 agcgatcgat cacagatcgc gctgcgcttt ctcacgacgc gcgaagaaac gatcgatcgc
     1081 gaatggtggc gcgcgcgttt gcgtgaatcc gccgaacggc gcgccgggat tgcgcgcgaa
     1141 acgaatgctt accgattggt ctattctgaa gccgatcttt tgccatcgct aatcgttgac
     1201 gcttacgaca acatctttgt gatgcaaacg ctgtcacagg gcgcagagca gttgaagggc
     1261 gcaattgccg aactcttgat cgaagggttc aacccacgcg ctatcgtcga gcgtaacgac
     1321 gcgcgcgtgc gcgagctgga aggacttgag ttgcgcactg gcgtgctgca cggcgaagcg
     1381 ccagaggaag ttgaaatcaa tcaacacggt gtgcgcttca gcatttcacc gctcggcggg
     1441 caaaagaccg gcgcattcct ggatcagcgt gagaattacc tggcggcgaa gcgcgtggcg
     1501 cacggtcgcg cgctcgactg cttcacttgc aacggcggct ttgcgatgca tatcgcgtcg
     1561 gcgtgcgaga gcgtgctggg aattgatatc tccgccgatg caatcgccgg cgcacaacgg
     1621 aatgccgagc tgaatgacgc tcgcaatgtt gagtttcgcg cagcgaatgt gttcgatgct
     1681 ttgcgagaaa tggaaaccgc aggcgagagg tttgacacga tcgttctcga tccgccggcc
     1741 tttgcgaaaa accgcgcgag tctgtcttca gcggcgcgcg gctacaaaga aatcaatctg
     1801 cgagccttga agcttttgaa tttgggcggt gtgttggtga cctgcagttg ctcatatcac
     1861 gtcactgaag aaatgtttct cggcctcatt gctggcgccg cgcttgacgc gcatcggcgc
     1921 gtgcagcttg ttgagaagcg cggacaatca ggcgatcatc ccgttctact cggcgtgccc
     1981 gagacccatt atctgaagtg cgtgatcgcg agagtaataa gctagcagga agtttcacag
     2041 ccgggacagc caagcttcgt atcgctgttg tgaggcgact aaccagctat gaaaagaaac
     2101 tggatctggc ttgggattgc gaagttgaaa ctgttgagcc tgatccaaag cgtctttttg
     2161 aatgcccctc atggctacct cgatcatgct ctttacctgt tgcccgtttt ttttcacagg
     2221 ttgtcccaac tcactgagca cttcttgtgc tgcaaccgaa tcagcttcaa ggctgagggt
     2281 agcaatgttg ctcttgagta attcgagcat agctaacgga tccgaccgtt catcttcaat
     2341 cgccctccga aacagcccca ctactctacg gagttgtatc ttattaccct tcacgaacgc
     2401 cctgtaggta agcgcgggct cggagtcgcc ttcgaacgag ccgtcttcaa agatcgcggt
     2461 cgagatctca atcacctgat ttggcaacgt gactggcgcg taaccagttg gggtcggcga
     2521 cgaccgggtg gccactctag cattgaattc gaaagcgtca cccaccaaga tcaacggcgc
     2581 gccttctttg ccctggggca tgctggagag ttgagtctgc cccgatttta ggacttggat
     2641 gctaagcgct ctcacgttct tacccgatag atttcgaacg gccacgcgat atgaaggtag
     2701 cgtcgagatg ttgggttgga tggccacgta gtcaatcgat cttgccttgc ttatgacttc
     2761 gggcagatcg aaggcatcgg gcgagaactt gactacagaa atgtcgaagg ggtcgacgcc
     2821 gaactgggcc agttctcgcg cacttatctt ttcgccttca tgaagtgtgt aagcggctat
     2881 atctttctgc tgttcgtgta attctcggaa aaaaactgat atccaaacgc ggacgccatc
     2941 tccagccgtt gcagatttga tgttaacagc gtccaccgga ggcaaatcgc taggcgctgt
     3001 tgctcgaatc cgatgaaaac gcgcgtacca cgctgcgttg ggtgatgacg aaggcacggc
     3061 ctggtaggca ggtggttctt ttggatagaa gcgcacttca agcgccagaa gcgtaggctc
     3121 ggtagaactt tgctgggcgc tagcgctgga gttcgcgagc aagcacgcga ctaccaaggc
     3181 cacagccacg gttttagcct tcatccaagt gctcgtttcc aatagaattc aaatcgtcgt
     3241 tagggactaa ttccgggatc ggcttccacg accgctttcg tcgtgtagtc cttgccattg
     3301 accgacagct tcacgttgta agtgcctgga tcgatgacgg gtccgacgtt gaagaaccca
     3361 ccgaagccgc cgccaccacc gccgccgcct cctcctcctc cacctccgcc accaaatccg
     3421 ggcggcaggt tggccggtcg cggtggagga tcgccacgca ggttccactg catccgattg
     3481 atgcccggat ccttcgtacc cacgattgtg cggatcactt tcccggtgta atcagaaatc
     3541 gtgatcttca catcgccgcc gggcgcggac ttcagatagt aactgatcgc cgttcccggt
     3601 tgcgggttcg cgccgcgata gaatttcgcg cctcctgtgt agcggttcag gcgcgggtca
     3661 ttcagccatt gcgtgcccgg tcgcacatcg aacaggaact cgtccttgtc catggccttg
     3721 ctgctcgaaa gctgctgcaa cggcgtgata tcgtcgagga tgtaaatgcc gtggccgtgc
     3781 gtgccgatga ttagatcgtt gtcgcgagga tgaaccagaa tgtcgtccac gcggattctg
     3841 ggcaagcccg acatgaactc cttccattct ttccccgcat ccagcgagat gaacatcccg
     3901 aattcagttc cgacgtagag cagatccttg ttcttcggat cttcgcgaat gacgttgacg
     3961 ttgccccacg acggcagatt gctggtgatc gaagtccacg tctgaccgta gtcgcgcgtg
     4021 acgaacacgt aaggtttcag atcgtcaaag cgatggccgt caactgagag ataacaggtg
     4081 gcggcatcaa agtgcgacgg ctcgacgcgc gtgatgtgat acatgtcgcc gatgccgggc
     4141 acgttcttag cgacgttggt ccatgtcgcg ccgccgtctc ggctcacctg aacgttgccg
     4201 tcatcagtgc ccgcccacaa aacgccggga aggaccggcg actcagcaat ggtgacgaca
     4261 taaccaaaac tggtgtagcc gtcgttcttc gacgccatcg gattttttcc tgagacgccc
     4321 atgatcgaaa gcgtgttgcg atcgacgtgt ctggtcagat cggccgacgc agtccaggtg
     4381 tcgccacgat cgagcgactt aaagaaccta tcgccgccaa cgtaaagaat gcgcggattg
     4441 tgcggtgaga tcacgatcgg cgtgttccag taaaagcgaa attgctcgcc gggcgaaggc
     4501 acgggaacga cgttcgacgc ggcaaagttg ccggcgccaa agccgccgaa accctgggcc
     4561 gcggcaagag ctgcgagtgc cgctgcggga tcctgcgtcg tcgcttcagg tgatggagac
     4621 ggcgatgctc cagcgccctg gccaccggcc cgccgcccgc tgccgccgcc ggcgcctgcg
     4681 ccacctccgc cgccaccagg gcgacgtggc gctgcgcgtg gacgaatgct aacgctgcgt
     4741 ccagtgcgca agtcgagtcg agacatcgag ccgttttgcg actcggaata gacagtgttg
     4801 tagtcagtcg ggtcggcctg cgaataaaag ccgtcgccgc cgccagtgcg gaaccaatcg
     4861 gcgttggtaa tgcccgctcc gctgcgcgtc tggcttggcc cgccccacga accgttgtct
     4921 tgcaacccgc catagacgta gtaaggtttg cgcatgtccg ccgccaccgc atagaactgc
     4981 gacgcgacaa tcgtattgat gaattcccac gtgtcgccct gatcgtaggt gacatccaga
     5041 ccgccgtcgt tgccgatcaa aaggtgattg ccgttctttg gatcgatcca gcatgcgtga
     5101 tgatcgctgt gcgcaattcc gggttgcagc gacttgaaag tcttgccgcc gtcggttgac
     5161 ctactgaagt tcagaccgcc cacgaaaacg ttctcggggt tgctcggatc gacgcgaatc
     5221 tggctgtagt acatgggacg attgttttcg gtgcagccgc ccgcgttgaa gcaggtgctg
     5281 accacgcgcc acgtcttacc tttgtcgtcg gagcgccaga cacctgactt tttcggatca
     5341 ggtgtcggtg agactgctgg cgtcgccgaa ggtgaaggcg taggagttgg gctagcgccc
     5401 gcctgttctt cgccgcccgt gccggtgctg gcaccgactt caatctgcgc gtacaggata
     5461 ttgggattcg agcgcgagac atcaattcca atacggccaa gcaagccttc gggaaatccg
     5521 gctccctgaa tcctggtcca ggtttttccc gcgtcggttg tcttccacag tcccgatcct
     5581 ggtccgccgc cgttgaatcc ccatgaggtt ctgcgacgct gataagaagc ggcgtaaagc
     5641 gtcttactgt ctgactgatc gatcacgaga tcggtaaagc ccgtgttttc gtctatgaac
     5701 ttgatgttgt tccacgtctt gccgccgtcg gtggtcttgt aaatgccgcg ctctttgttg
     5761 ggcccgaaca aatggccgag cacggcgacg taaaccacgt tcgcgtcctt cggatcgatg
     5821 acgatgcgcg cgatggtctg tgaattctca agacccatct tcgtgaaggt ctttccggca
     5881 ttcgttgatt tgtaaatgcc gtcgccaaag cttgagcttt ggcggttgtt agcctcgccg
     5941 gtcccgaccc aaacgatgtc cgggttcgac ggcgcaatcg cgatgtcgcc gattgaagca
     6001 gttgaatacg tgtcgaaaat cgacgtaaaa gtcgtgccgt tgtttgtggt tttccaaact
     6061 ccgcccgtcg cagcgcccac gtagtagata taagggttgc tgtccacagc ggcgatgtcg
     6121 tcgatgcggc cgcccatgct ggccgggccg atgccgcgcc aaacgaagcg cttaagcatc
     6181 gggtcgctcg accaattgat tggtgtcggg gtcggactcg gcactggtgt ggccgggacg
     6241 ctgcgcgccg gagacggact ctgcgcagcc gccggcgttt gggttggaac cgggttcgcg
     6301 gcgtgcgtag ccaatgcccc gagcaccatt gcgacggaaa ctagcccaca gaacgcagcc
     6361 aggaggccgc cgagttcacg aacggaacga cgtgtgtctt tcatttgggg aaacttccat
     6421 tcagccgagt tgttgtagag acagacaacc tgcgggcatt ctgagtaccg ctagaaaaac
     6481 gtgtcagaga tactaatgac gagcaaaccg ttgaatcggt tacgaagctt actagtaatt
     6541 ggcgggaaac ttttatctca ttctgcaaag agtagtcaac tgattcgatc aagatgggcg
     6601 tgagggcaac tcttgcagtc agccacaggc cgttcgtatt attgcgtcgg ttggccttgt
     6661 caacgaagag acattcatgt caaggtcgcg attcatgacg cagaatgctt gacgatatcc
     6721 ccaaccgcgt ttagaattcg agtcgcacta tcggatttga gaactcacat gctgccgcga
     6781 acgcaacgtc agaaagaagt cctcgattac atcactcgct ttctcgcgaa gcatggtcac
     6841 gaaccgtcct acgcgcagat cgcgcgcaac ttcggcgtca gttcaaaggc tacgatcgca
     6901 aaacacatct cggcgctcga gaagcgcgga ctgatcaaac gcgaacacaa acccggacgc
     6961 ttcacgctcg cagtgaaatt tgaggaagcg ccggccaacg caacatgcga agttgcgcta
     7021 ctcggtcgca tcgccgccgg cgcgccgatc gatgcgatcg aagatatcga gatgatctgc
     7081 gtgccgcgtt tcctgctcgg acgcgtacgg cctgagcgag tctatgcgct gcgcgtgaaa
     7141 ggcgattcga tgatcgacga gcacatctgt gacggcgaca tcgcgctaat cgaaaatcgc
     7201 accgacgcgc acgacggcga aattgttgtc gcgctaatcg attgcgcaag ggcaactctc
     7261 aaacgactgt ttcgcttcgg tgaggaagtg gaactgcggc cggcaaattc acaaatgaat
     7321 gctctccgcg tgcacggttc ccgcgtggaa atccagggca tcttccgtgg tctgctgcgg
     7381 cccaacgcct agcctgtctt cctccagaaa gtgccaacgc ccaacctttt cgccattttt
     7441 gtggggactt cgcgttttag aggcgggcta cttcccgccg tttgctatcg acccttccgc
     7501 ccaaccactt tttcggcggt gcgttggaac tcgaatcgac attcctcgag ccgcttgtcc
     7561 tcgcgcaagc cgatgaagac cggatgccgg agatgatcgt ccgccgtcca ttccgagaat
     7621 ttcacttccg cgaccagctt tggtttgagc cattgcacag gctcgttcgt ttttggtgtc
     7681 acgatgaacg gactctgttt tgttctcagc ggctgcatca acttatagat ctcagtcaat
     7741 cttcgttgat tgaagccgcc gccgacatgc gctacgtagt gcagttcgcc tccgcgaaat
     7801 aatccgacca ccagcgcgcc gaaatgcgaa cgtgatccgc gcggctgggt gtagccgcca
     7861 atcacaactt cagagcgctg cacggttttt actttgagcc aatcggcgct gcgcctttgc
     7921 acgtaaggac tggcggcgcg cttggccatc atgccttcga gatgaaactt ttctatctgc
     7981 tcaaagaacg cttcgccatc accggtgatg tgttcggaaa gcttgatgaa gcttgccggc
     8041 cgcagaatgt tctccagcgc ggtcttgcgt tcgaccactg aacacgacat caagtcatgg
     8101 ccgtcggcat aaagcagatc gaagacgtag taaacaatct tcgccttgcc gagcaaggct
     8161 tcgatgtcac ttttcttctt tcggcccaca cgcggctgca aaagttgaaa gcgcggcatc
     8221 ccgtcgcgat cgagcgctac aatctcaccg tcgagaatcg cctctttcgc tttgatctgg
     8281 ttgcctacgt ccataaattc ggggtactgg tgagtcatgt ccagttgatt gcgcgaaaca
     8341 aaacgggcgc tgccgttttg aacaaagcag accgcgcgaa acccgtccca cttggtttca
     8401 aaaatccatt cagaattcga aaacggttcg tctacgagcg tcgccagcat cggatgaatg
     8461 atcgcaggca tagttgtagg ccgcgcgcgg ccgcaaactt ccggcaacgc gcctcctgac
     8521 gttcgcgccg gtcttttgcg cgccgcttgt ttgccaggtt gcgcaggttt tctcgccatc
     8581 gtgtaactcg attcgccgtg ttcgacctgt gttactttag aagcaaaaga agtgacatgc
     8641 aaagcttcag caacgcccgg aagcgctcgt ttcaagccga cgaaggcgca gttgatcgcc
     8701 gccgccggca agactgtgcc cgacgtgatt gcgccagatc tgcatgtgct tttctgcggc
     8761 atcaatccgg ggctctacac cgccgccgtc ggtcatcatt tcgcccgacc gggcaatcga
     8821 ttctggcccg cgctgcacaa atcgggtttc accaatcgct tgctgtcgcc cttcgaagag
     8881 gatgagttgt taaagcatgg gctcggcatc acgaatgtcg tcgcgcggac taccgcgact
     8941 gctgctgagc taaccaagca agactacgtt aagggcggcg acgcgctgag ggcaaaggtg
     9001 cgacgttatc agccgcgcat cctagcggtg ctcggtgtcg gcgcttttcg cgaagccttc
     9061 acgcagccga aagcgttgct cggagagcag aaagatcggc ttggcgacgc gcgtgtttgg
     9121 gtgctaccaa acccgagcgg gctgaacgca aattatcagt tgcccgatct tgtgaagttg
     9181 tttcgcgaat tgcgtgcggc caccagccgc atgaattgaa ttagtgggaa actcgccgct
     9241 cttccttcgg ctgctttcaa acgctaatgc tcgcgtgatt aaatgactgc acacccaagc
     9301 gaagatggaa ggtaaggaat gatcagaaaa ctgaagtcca gcaagtatcg tctttattca
     9361 cgaaagaaag atcccaaaac cggaaaacgc aggaacctcg gcacctttga cacgcccacg
     9421 gcggcagaga aacacgaacg cgaagtgcag tatttcaagc gcaaaggata gaacttggat
     9481 ttcctggccc atctcaacgc acaacaacgc gaggccgtca cgtcaacaga cgggccgctg
     9541 ctgattttgg caggcgcggg atcgggaaag acacgcgtca tcgcttgccg cattacgtac
     9601 ctgattggcg agcgcggtgt ttggccgcgc aacattctgg cggtgacctt cacgaacaag
     9661 gccgccgaag aaatgcgcaa ccgtgtcagc aagcttatcg aaggacttga gctgggcagc
     9721 gcgccgttga tttcaacttt tcacagcctg tgcgtgcgca ttctgcggcg tgacatcgaa
     9781 gcgttgaagg caggctacac gcgttcgttc acgatctatg accaggatga tgcagttcgg
     9841 ctgaccagga actgcattcg cgatcttggt ctcgatgaac gtcaactgac accgcgttcg
     9901 gtgcagggcg cgattagcgc ggcaaaaaat cgcggcgaag atgccgaggc ttttgccgcc
     9961 caagcgcagt tcatcgacga acgccgagca tcgattgcgc aaatcttcaa gctgtacgaa
    10021 gaacgcctgc acaaaaacaa cgccctcgac tttgacgatt tgctgatcaa gaccgtgcgt
    10081 ttactccgcg acgttccgga agtgcgcgag gggtacaacg accgctttcg ctatttgctg
    10141 gttgatgagt atcaggatac taactcgtta cagttctcgc tgattcgact gctgacagaa
    10201 aagcagcaga acatctgtgt cgtgggtgat ccggatcaat ccatctatcg ctggcgcggc
    10261 gcggatatta agaacatcct acagttcgaa gaacactttc cgtcagcgaa ggtcattcgc
    10321 cttgaagaga attatcgttc gacgcagaac attctggatg tcgccagcgg cgtgatcaaa
    10381 cacaacgtcg agcgcaaaga aaaagctctt tggaccgaga acccgcgcgg tgagttgatt
    10441 cgttactttc aagcgctcga tgccgaatcc gaagcgcgtt tcgtggccgg caagatcgaa
    10501 gcgcacctcg cggcagagcc ggagattcgc gccgccgtct tgtatcgcac caactcacaa
    10561 tcgcgcgtgt ttgaggaagc aatgcgtcgc gcgagtcttt cgtacaacat cgtgggtggc
    10621 ttttcgtttt acgaacgaat ggaagtgcgc gacatcatcg cgtatttgaa gctcgcgcta
    10681 aatccgtatg actcgatcgc gttgcagcga gtcatcaata ctccgccgcg aggtatcggc
    10741 aagatgacgc tcgacgagat tgaaacgcgg acccgcgaaa tgggtatttc ctattgggag
    10801 gcgatctcgg atctgatcca agacgagcgg cgtctttccg cgcgcgcgat tgcgtcgctg
    10861 acaaactttc aaagaatcgt gaacggttta gcggcgaaag tggggagcgt agttcggggc
    10921 ggtagcccga ccgtgagggc gggctcagaa gagcagatcg aatccacttc tccagtttcc
    10981 gacctggtca aagcggcgat cctggacacg ggttatgaga acgctctgaa agctgagaac
    11041 gacgacgaag ccgaggcgcg tctggaaaac ttacaggaat tggtcaacgc cgccgtcgat
    11101 tacgatgagc aaggcgcgga agggctgcgt gagttcatcg accattcggc tttggtttca
    11161 gacaccgacc aatacaaagg cgacgtgccg gttactttga tgaccgcgca ttcggcgaaa
    11221 ggattggagt ttcccttggt tttcatcgtc gggcttgagg acggtctgtt tccgcactcg
    11281 cgctcgctga gcgattcatc tgatatcgaa gaggagcggc ggctctgcta tgtggcgatg
    11341 acccgcgctg aaaaatacct ttacgtcacc cacgcggtaa agcgtcgggt gtatggcgag
    11401 gaactagctt ccgagccttc gcagttcctg aacgagatgc cgcttgagtt gatcgaggac
    11461 ctttcgcgtg gaagatcgtg gttgtcgttt gcgcgcggtt cgaaatcggt gccgcgagag
    11521 gccggctcac ttgaatacga aaacgaagaa tcagcgaacg gagacggcga gccgtctttg
    11581 accgatgagc accagcaatc aggccgacac agcgccagga accccgcgaa gaaatacgca
    11641 ggcaagacct acgacagcgt cgaatcggta gaagagtttt tccgcaagcg aactgcgaag
    11701 ttggtcggtt acagaaccgc gagcggtagc gaccgg
//
LOCUS       DASZZE010000432         2227 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_144870, whole genome shotgun sequence.
ACCESSION   DASZZE010000432 DASZZE010000000
VERSION     DASZZE010000432.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2227)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2227)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2227
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144870"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..410
                     /locus_tag="VHD88_08340"
     CDS             <1..410
                     /locus_tag="VHD88_08340"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HVS21841.1"
                     /translation="RDRLFFQSLARVSPRTHVPVRSLIVQGFWAGVVALSGSFDTLTD
                     YAIFALTLFYGLVAGSVFIFRRRMPDAPRAYRTWGYPVVPILYLLVTAALVINTIMTA
                     RKQSAIGLGLILIGLPVYLIWSSRNRSRAAQNE"
     gene            458..1438
                     /locus_tag="VHD88_08345"
     CDS             458..1438
                     /locus_tag="VHD88_08345"
                     /inference="COORDINATES: protein motif:HMM:NF024748.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008800 - beta-lactamase activity
                     [Evidence IEA];
                     GO_process: GO:0030655 - beta-lactam antibiotic catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HVS21842.1"
                     /translation="MAKKKIALLLATLLLLVAYVSVAAQRRFTIESARPANVDPAKTL
                     QELVNEAAHTALTKFADKKLTEAQLSITLIDLRDAQHPVTASFRGNERVYPASVVKLF
                     YLVAVHRWLEDKRIEQTDELKRAVRDMIVDSSNEATQYIVDVLTHTTGGYELPPKEME
                     DWQNKRNVVNRYYTALGLTNINVNQKTFCEDAYGREKVSRGPNGENRNKLTTDATARL
                     LSEIVTGRAVTPARSAQMMELLKRDFSGTSKDNDDQGHGFTGIALQGIGAKLWSKAGW
                     TSTTRHDAAYIGLPNGAKFVLVTFTTDHANEREIIPTVARVVIEGIASVR"
     gene            1550..>2227
                     /locus_tag="VHD88_08350"
     CDS             1550..>2227
                     /locus_tag="VHD88_08350"
                     /inference="COORDINATES: protein motif:HMM:NF017532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HVS21843.1"
                     /translation="MISDLSEYHRPIADLFAAPQTAEEWERYRLTDTQIEFFHTNGYL
                     AGVRVLNDEQIEELRADLAELIDPNHPGHDLFYEFHSNESTDPTKILFHALGAWRIAL
                     GFHDLLWNPAFLIPASQLLGGAVRFWHDQLFCKPAHHGGVVAWHQDYSYWTRTQPMAH
                     LSCWIGLDDSTRENGCVHYVPGSHRWGLLPITGLANDMHAIESVISEEHKAQFKPIPI
                     ELKKGECA"
BASE COUNT          494 a          628 c          624 g          481 t
ORIGIN      
        1 cgcgcgaccg cttgtttttc cagagcctcg cgcgcgtgtc tccacgcacg cacgtgccgg
       61 tgcgctcgct gatcgtgcaa ggcttctggg cgggagtggt cgcgctttcc ggctcgtttg
      121 atacgctgac cgactatgcg attttcgcgc tgacgctctt ttacggattg gtcgcgggct
      181 cggtgttcat ctttcggcga cgcatgcccg acgccccgcg cgcgtatcgc acctggggtt
      241 atccagtcgt gccaatcctt tatttgctgg tcaccgcggc gttggttatt aacacaatca
      301 tgactgcgcg aaagcaatcg gcgattggac tgggcctgat tctgatcgga ttgccggtgt
      361 acctgatctg gtcgagcaga aatcgctctc gcgccgcaca gaacgaataa tgctaccgcc
      421 gatggtttcg caaaaccatt tcaagaaaag actatttatg gctaaaaaga aaatcgcatt
      481 gctgctggcg acgctgctgc tattggtggc ctacgtttcg gttgccgctc agcgacgatt
      541 cacaatcgaa tcggctcgac ctgcgaatgt cgatccagca aagactctgc aggaactcgt
      601 caatgaagcc gcgcacacgg ctctgacgaa gtttgccgac aagaaactta ccgaagctca
      661 actctcaatt actctgatcg atttgcggga cgctcaacat cccgtgaccg cgagctttcg
      721 cggcaacgaa cgcgtgtatc cggcgagcgt ggtgaaacta ttctatctcg tagccgtgca
      781 ccgttggctc gaagacaagc gtatcgaaca gacagacgaa ctcaagcgcg cggtgcgtga
      841 catgatcgtc gattcgtcga acgaagcgac gcagtacatc gttgacgtgc tgacgcatac
      901 gaccggtggt tatgaattgc cgccgaagga gatggaagat tggcagaaca aacgcaacgt
      961 cgtgaatcgc tactataccg cgctgggcct tacgaacatc aatgtgaatc aaaagacgtt
     1021 ctgcgaggat gcctacggcc gcgagaaagt ctcgcgcgga ccgaacggcg agaatcgaaa
     1081 caagctcacg actgacgcga ctgcgcgttt gctgagcgaa attgtcactg gccgcgcggt
     1141 cacgccggcg cgtagcgcgc agatgatgga attgctcaag cgcgatttct caggcacatc
     1201 caaggacaac gacgatcagg gccacggctt taccggcatc gctctccagg gaattggcgc
     1261 gaagctttgg tcgaaagccg gctggaccag cacgacacgg cacgacgccg cttacatcgg
     1321 actgccaaac ggcgcgaagt ttgtgctcgt gactttcaca actgaccacg cgaacgagcg
     1381 cgagatcatt ccgaccgtcg cgcgtgtggt gatcgaaggg atcgcgtcag tcaggtaaga
     1441 aagatcttaa cgcaaaggac gcaaagtttt ccgcaaagga gcgcaaaggt tcttccctgg
     1501 cgacctctgc ggtttcctct gcgtaccttc gcgttttgaa accagtacca tgatctcgga
     1561 tctctcagaa tatcaccgcc ccatcgcgga tcttttcgct gcgccacaaa ccgccgagga
     1621 gtgggaacga tatcgtctca ccgacacgca gattgagttc tttcacacaa acgggtatct
     1681 tgcgggcgtt cgcgttctca acgacgaaca gatcgaagag ctgcgcgctg acctagccga
     1741 actgatcgat ccgaatcatc ccggccacga tctcttctac gaatttcatt cgaacgaatc
     1801 gactgatcca acgaagatcc tctttcatgc gctcggtgcg tggcgcatcg ctcttggttt
     1861 tcatgacctg ctttggaatc cggcgtttct gatacccgcg tcgcaactgc tcggcggagc
     1921 agtgcgcttc tggcatgacc agcttttctg caaaccggcg catcatggcg gcgtggtggc
     1981 ttggcaccag gattattctt actggacgcg cacgcagccc atggcccatc tgtcgtgctg
     2041 gatcggactg gacgattcga cgcgcgagaa tggttgcgtc cattacgtgc cgggcagtca
     2101 tcgctggggg cttttgccaa tcactggact ggcgaacgat atgcacgcga ttgaaagcgt
     2161 gataagcgag gagcacaaag ctcagttcaa acccataccg attgagttga agaagggcga
     2221 gtgcgca
//
LOCUS       DASZZE010000433         2572 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_144998, whole genome shotgun sequence.
ACCESSION   DASZZE010000433 DASZZE010000000
VERSION     DASZZE010000433.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2572
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144998"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(158..1480)
                     /locus_tag="VHD88_08355"
     CDS             complement(158..1480)
                     /locus_tag="VHD88_08355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21844.1"
                     /translation="MKRCPKCNRIFTNDSQKFCTHDGGLLVASEPAQGETIHFDSAAL
                     DDAPTKAISRELVSEITGPFDPMKTTVGQNQPDQERTSEVRGRITSDLAPQSAPLPPE
                     QPTAAPLTPPSSELISQPPLQTPAQPTQPQQVSAPSGSGPISPSAPMPPPQFAPASQA
                     QQVQPLGAPQPKKKSKLPLILGVGAVLFIFGIAAAAAAYVFLPRLIARRTVERPIQLP
                     KPTIEEPTPIIKVTPSEIESPAPTPDNEPPPYSPPSDAVQFVNSNANLDGKLAEHYVD
                     FNFYYPERWKKDPKAGVPGASNFVKVERRLPPDFTQENFAVGWYSSSGSEAGDRATFP
                     TLVENLSAQFAKNFPDYRKISEGKTKAGPYDGYEFRFESRSRNTAKGDLKVWGRVILI
                     PPVDGGKNGVTLLMLTTSLAPELKSVDDVGDKGELPMVLESFRFGKKN"
     gene            complement(1507..>2572)
                     /locus_tag="VHD88_08360"
     CDS             complement(1507..>2572)
                     /locus_tag="VHD88_08360"
                     /inference="COORDINATES: protein motif:HMM:NF024299.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HVS21845.1"
                     /translation="ARPTRPTRPTRPNPAEVEARFEDALSDGNDARDARKFVTAEASY
                     RAALKLKPRDERAYYGLGNVFVDQQRWEAAEQSYRQAVEIAPNNPEALMALSFVLVQP
                     VVGAVNAKRFADAEGFARRATQLQSNSAVAFDRLGVAMTARGIFNADTEAAFRRAVEL
                     DPNFVVAQVHLARVLRHMNRYSEADPLYQSAIDKAKDAPTLVLIADAMQSEQRWNDSE
                     PVLRRALQLDPLNPGALYLLGRVLSVNRKYDEAESVLKTAVQVNPKSFAARNILGRVY
                     LGLQRYDDAFRTYDQAVEFASDADSKQLAGQFGFGGVGDGYMNAGRARDAVRAYQRAL
                     QLDPGNADLQSKLAAARAKP"
BASE COUNT          496 a          786 c          731 g          559 t
ORIGIN      
        1 acccggtcgc taccgctccc ggttctgtac cttcttcccc ccatttcacg ggcttcggac
       61 tcttgggttg gttggatgtc cccgcactga agtgctgggc tattcccgaa cgtccgctgc
      121 gcggactcac ccgctcgcta ccactcgcgg ttctgaatca gttcttcttc ccaaaacgaa
      181 atgattcaag aaccattggt agctcgcctt tgtcgccgac gtcatcgacg cttttcaatt
      241 ccggcgcgag cgacgtcgtc agcatcaaga gcgtcacgcc gttcttcccg ccatcaaccg
      301 gcggaatgag aatcacgcgt ccccagactt tgagatcgcc cttggcggtg ttgcgtgacc
      361 tgctctcgaa gcgaaactcg tagccgtcgt atggccctgc ttttgtctta ccttcagaga
      421 tcttgcgata atcgggaaag tttttcgcga actgagcgct gaggttctcg accagagtag
      481 gaaatgtcgc gcggtcgccg gcttcagagc ccgacgagga ataccaacca accgcgaaat
      541 tctcctgcgt gaaatccggc ggcagacggc gctcgacttt cacgaagttg ctcgcacctg
      601 gcacgccggc tttcggatcc tttttccacc tttccggata gtaaaagttg aagtcaacgt
      661 agtgctcggc gagtttgccg tcgaggttcg cgtttgaatt cacaaactgg accgcatcag
      721 acggcggaga ataaggcggc ggctcgttgt ctggagttgg agcaggactc tcgatctcac
      781 tgggcgtgac tttaatgatc ggagtcggct cttcaatcgt cggcttcggc aattgaatcg
      841 gtctctccac agttcgcctg gcgatgagcc tcggaaggaa aacgtaagcc gcagccgccg
      901 ccgcgatccc aaaaataaaa agcactgccc caacgccgag tatcaaagga agctttgatt
      961 tcttcttagg ctgcggcgca cccagaggct gaacctgttg cgcctgcgac gcgggcgcga
     1021 attgcggcgg aggcattggc gccgatggcg aaatcggacc agagccggat ggcgctgata
     1081 cctgttgcgg ctgtgttggc tgcgcgggag tttgtagcgg cggttgcgag attagctcag
     1141 aactcggcgg agtcaatggc gccgccgtcg gctgctctgg tggcagcggc gcagactgcg
     1201 gcgctagatc gctggttatc cggccgcgca cctccgatgt tcgctcctgg tccggctgat
     1261 tctggcccac cgtcgtcttc atcggatcga acgggccggt gatttcggaa accagctcgc
     1321 gcgagatcgc tttcgtgggc gcgtcgtcaa gcgcagccga atcaaagtga atcgtctcgc
     1381 cttgcgcagg ctcagaggca accagcaatc cgccgtcgtg agtgcaaaat ttttgactgt
     1441 cgttagtaaa gatgcgatta cacttcgggc aacgtttcat tggagttctc tcgggttgtg
     1501 ctacgactac ggtttcgcgc gggctgccgc cagcttgctc tgcaaatccg cattgcccgg
     1561 gtccagttgc aatgctcgct gataagctcg cacggcgtca cgcgcccggc cggcgttcat
     1621 gtaaccatcg ccgactccgc caaaaccaaa ttgtccggca agctgtttac tatccgcgtc
     1681 ggaagcgaat tccaccgctt gatcgtaagt cctgaaggcg tcgtcgtaac gctgcagacc
     1741 caggtaaaca cgccccagaa tattgcgcgc cgcaaaactc ttcggattga cctggaccgc
     1801 ggttttcaaa acgctctcgg cttcatcgta ttttcgattg acggacagca ctcggcccag
     1861 cagatacaaa gcgccgggat tcagcgggtc caactgtagc gctcgacgca agacgggctc
     1921 ggaatcattc cagcgctgct ctgattgcat tgcatcggcg atcagcacca gcgtcggcgc
     1981 gtccttcgcc ttatcgatcg cggactgata gagcggatcg gcctcgctgt agcgattcat
     2041 gtgtcgcagc acccgcgcca gatgaacctg ggccaccacg aaattcggat ccaactcaac
     2101 agcgcggcga aatgctgctt cggtgtccgc attaaaaatg ccgcgcgcgg tcatcgccac
     2161 gcccagccga tcgaacgcga ctgcactgtt cgactgcaac tgagtcgctc ggcgcgcgaa
     2221 gccctccgca tcagcaaacc ttttcgcatt caccgcgccg acaaccggct ggaccaggac
     2281 aaagctcagc gccatcaacg cttccggatt attcggagct atctcaacag cctgacgata
     2341 ggattgctcg gcagcttccc agcgttgctg atcgacgaac acgttgccga gcccgtagta
     2401 cgcgcgctcg tcgcgcggct tcaatttaag cgccgcgcgg tatgaagctt cggcggtgac
     2461 gaacttgcgc gcatcgcgtg cgtcgttacc gtcagagagc gcgtcttcaa acctggcttc
     2521 gacttccgct ggattcggtc gcgtcggtcg cgtcggtcgc gtcggtcgcg cc
//
LOCUS       DASZZE010000434         1745 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_293286, whole genome shotgun sequence.
ACCESSION   DASZZE010000434 DASZZE010000000
VERSION     DASZZE010000434.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1745)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1745)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1745
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293286"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..622
                     /locus_tag="VHD88_08365"
     CDS             <1..622
                     /locus_tag="VHD88_08365"
                     /inference="COORDINATES: protein motif:HMM:NF019869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HVS21846.1"
                     /translation="FMPYLTEELWLKLPVKHPQLMHRAYAEAEPTIMLASYPQGDLAL
                     IDDRAEAEMQAVIDLISRVRNIRSEMNIKPGERVPLLIGAADSQLQSVFEANVDQIAR
                     LARASQVSIAANLNGPKASARAVLAGGAEVAIPLEGLIDFEQERTRLLREKEKLQKES
                     GKIEAQLANPDFIEHAPAEKVEELRFRIADIAQRTKALDQNLEALS"
     gene            768..1622
                     /gene="nadC"
                     /locus_tag="VHD88_08370"
     CDS             768..1622
                     /gene="nadC"
                     /locus_tag="VHD88_08370"
                     /EC_number="2.4.2.19"
                     /inference="COORDINATES: protein motif:HMM:TIGR00078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004514 - nicotinate-nucleotide
                     diphosphorylase (carboxylating) activity [Evidence IEA];
                     GO_process: GO:0019363 - pyridine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HVS21847.1"
                     /translation="MNWLDEGALYSSIGLFLREDLGRGDITTQSVLMRNARARGRFVA
                     GEKMIVAGLEAAEEVFVTLDPQQQLEAFAADGEEVEAGKVIARTSGFADVLLAGERVA
                     LNLLQHLSGIATITREYVRAVEGTKAKIADTRKTTPGLRMLEKYAVLLGGGANHRCGL
                     DDGVCVKSNHAAIAGGISTAVKSARERIGHVHKIEVEVATERDVREAIESGADVLAID
                     GLSAAEAATLIGQARALSPRITTEVAGTFTVESVRAYAEAGADLIRVDALTQSVRAMD
                     ISFQIQPG"
BASE COUNT          381 a          452 c          567 g          345 t
ORIGIN      
        1 gttcatgcct tatctcacgg aagagctttg gctgaaattg ccggtcaagc atccgcagct
       61 tatgcatcgc gcttatgctg aggccgagcc gacgattatg ctggcttcct atccgcaagg
      121 tgacctcgcg ctgatcgacg accgagccga agccgaaatg caagccgtca tcgatctgat
      181 ttcgcgtgtg cgaaacattc gctccgagat gaacatcaaa cccggcgagc gcgtgccact
      241 gttgattgga gcagcagact cgcagttgca gagcgtgttc gaagcgaatg tcgatcagat
      301 tgcgcggttg gcgcgggcgt cgcaagtttc aatcgctgca aatctgaacg gtccgaaggc
      361 gtcagcccgc gcagtactcg ccggcggcgc ggaggtcgcg attccgctcg aaggcttgat
      421 cgatttcgaa caagagcgca cgcgactttt gcgggagaaa gaaaaattgc agaaggaatc
      481 agggaagatc gaggcgcaac tggcgaatcc tgattttatc gagcacgcgc cggcggagaa
      541 agttgaagag ctgcgatttc ggatcgcgga tattgcacaa aggacgaagg cattggatca
      601 gaatctggag gccctttcat gagcagctat tttctgagcg cgcttcgcgc gctgtgcgga
      661 caaggatgtc cgcgctccca gggaggcact cgcatgaacc gtcgcttaag agcgcgcttt
      721 gcgcgctgtg cgtacaggga tgtccgcgct gccagggagg ccctctcatg aactggcttg
      781 acgaaggcgc gctctattcc agcatcggac tgtttctgcg cgaagacctg gggcgcggcg
      841 acatcacgac gcagtccgtc ctgatgcgaa atgcccgcgc gcgcggtcgg tttgttgccg
      901 gagagaagat gatcgtcgct ggacttgagg ctgccgaaga agtcttcgtg acgctggatc
      961 cacaacagca gctcgaagcc ttcgccgcag acggtgaaga agtggaagca ggaaaagtga
     1021 tcgcgcgcac cagcggcttt gccgatgttc tgcttgccgg tgaacgggtc gcgctaaatc
     1081 tgttgcagca tctgtcaggc attgccacga tcacgcgcga gtatgtgcgt gcggtcgaag
     1141 ggacgaaggc gaagattgcg gatacgcgca aaaccacgcc gggtttgcgg atgcttgaga
     1201 aatacgcggt gctcctcggc ggcggtgcga atcatcgttg cgggctggac gacggcgttt
     1261 gcgtgaagtc gaatcatgcg gcgatcgccg gcggaatcag cacggccgtc aagagcgcgc
     1321 gagaaagaat tggccacgtg cacaagattg aggtcgaggt cgcaaccgag cgtgacgtgc
     1381 gtgaagcgat cgaaagcggc gccgacgttt tagcgattga cggtttgtcg gcggccgaag
     1441 ctgccacgct gatcgggcag gcgcgcgctt tgtcgccgcg catcacgact gaagtagccg
     1501 gcacgtttac ggttgagagt gttcgggcat atgctgaggc gggcgccgat ctgattcgcg
     1561 tcgatgcgtt gacccagtca gtccgagcga tggatatcag ttttcaaata cagcctggat
     1621 gatcgcctta gcggcgggaa cgaatttgca actgaagcgt gaaagtctaa agcatcctgg
     1681 gttgcgacgg tcgcatcagt caaaatagca aggaggttcg tgatgccaag aagatcaatt
     1741 cgcca
//
LOCUS       DASZZE010000435         1557 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_31393, whole genome shotgun sequence.
ACCESSION   DASZZE010000435 DASZZE010000000
VERSION     DASZZE010000435.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1557)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1557)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1557
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31393"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..460)
                     /locus_tag="VHD88_08375"
     CDS             complement(<1..460)
                     /locus_tag="VHD88_08375"
                     /inference="COORDINATES: protein motif:HMM:NF012880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016624 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, disulfide as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HVS21848.1"
                     /translation="MPDQKPRNENRKGGPHRRRPGFQMRISTKYAPRKPVDDQPRSCI
                     TDTSLKPGELLELYRFLKLTRLVEERIVNLYRQTKVVGGVYRSLGQEATAVGSAYALR
                     PDDFITPIIRDLGAVFVKGIRPREILAQYMAKAWGPSGGKDLNVHFGYLDK"
     gene            complement(565..>1557)
                     /locus_tag="VHD88_08380"
     CDS             complement(565..>1557)
                     /locus_tag="VHD88_08380"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HVS21849.1"
                     /translation="SKSIIIATGSVVRPIRGFETDGQQVVNSDHILELTEVPKSLIVM
                     GAGAVGVEFASVYSRFGAETTLVELLPRLVPLEDEEVSAELLKSFRKRGIKSQVDTKL
                     EKLEKTDKGVVVTGKTSKGEDVKLEAEMLLVAVGRMPFTQGLGLEGTKIKIEKGFIQV
                     DEFQQTAEKGVYAIGDVVPTPLLAHLASKEGIVAVEHFAGKNPRPINLRLVPNCTYCD
                     PEVASVGLTEAKAREAGYDVKLGKFPFSASGKARILGEEEGFVKIVSESKYDEILGVH
                     IIGPHATELIAEACVAMQLESTAEELGNTMHAHPTVSEAVMEAAEGVHGKTIHI"
BASE COUNT          316 a          460 c          411 g          370 t
ORIGIN      
        1 ctttgtcgag atagccaaag tgaacgttca gatcctttcc accggaaggt ccccaggcct
       61 tggccatgta ctgcgccaga atttcgcgcg ggcgaattcc tttcacaaat accgcgccca
      121 gatcgcgaat gatcggtgtg atgaaatcgt cgggcctgag cgcataagcc gatccaaccg
      181 cggtcgcttc ctgacccaat gacctgtaga cgccgccaac aactttggtt tgtcgataca
      241 agttgacgat gcgctcttcg accagacgcg taagcttcag aaagcgataa agctctaaca
      301 actccccggg cttgagcgaa gtgtcggtaa tgcacgaacg cggctggtca tcgacgggct
      361 tgcgcggcgc atactttgtg ctgatgcgca tttgaaagcc cgggcggcgt cgatgcgggc
      421 cgcctttgcg attttcgtta cgtggttttt gatccggcat ggtcactcaa ctctctgtgc
      481 acctccgtgg tcctttgtgt ctctgtggtg aacgttcgct gatttaccac agagacacgg
      541 aggaatcaca gagggccaca gaggctaaat atgaatcgtc ttgccgtgca cgccttcggc
      601 ggcttccatc actgcttcgg aaacggtcgg atgcgcgtgc atcgtgttgc ccaactcttc
      661 cgcggtcgat tctagttgca tcgcgacgca ggcttcggca atcaattccg tcgcgtgtgg
      721 cccgatgatg tgcacgccca gaatctcgtc gtacttgctt tcgctgacga tctttacgaa
      781 gccctcttct tcgccgagga tccgcgcctt tcccgaagcg ctgaacggaa acttgccgag
      841 cttaacgtca tagccggcct cgcgcgcttt cgcttcggtc aggccgacgg aagcgacttc
      901 gggatcgcag taagtgcagt tcggaaccag acgcagattg atcggtcgcg gattcttgcc
      961 cgcgaaatgc tcgaccgcca cgatgccttc tttcgacgcg aggtgcgcca gcaaaggcgt
     1021 cggcaccacg tcaccgattg catagacacc cttctcagcc gtctgctgaa attcgtcgac
     1081 ctgaatgaaa cccttttcga tttttatctt cgtgccttcc agtccgagtc cctgcgtgaa
     1141 aggcatacga ccaactgcga ccagaagcat ttcagcttcg agctttacat cctcgccctt
     1201 cgaagtcttg ccggtgacga ctacaccctt gtcggtcttc tcaagtttct ccagcttcgt
     1261 atcgacttgc gacttgatac cgcgtttgcg aaacgacttt aggagttcgg cggaaacctc
     1321 ttcgtcttcg agcggaacta atcttggtag tagttcgaca agggtcgtct ctgcgccgaa
     1381 acgtgaataa actgaagcga actcaacccc gaccgcgccc gcgcccatga cgatcagaga
     1441 cttcggaacc tcagtaagtt ccagaatgtg atcgctgttg acgacctgct ggccgtcggt
     1501 ttcaaatccc cgaatcggcc gcacgactga gccggtggcg atgatgatgc tcttcga
//
LOCUS       DASZZE010000436         2711 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_14446, whole genome shotgun sequence.
ACCESSION   DASZZE010000436 DASZZE010000000
VERSION     DASZZE010000436.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2711)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2711)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2711
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14446"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1338)
                     /locus_tag="VHD88_08385"
     CDS             complement(<1..1338)
                     /locus_tag="VHD88_08385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21850.1"
                     /translation="MASLFSALTRRLTRAPDAGGELPIRAELYSVERLEHYAAALAAE
                     HQISEKPQRVSLLLPRLEENGRRLLACYKSLAESIREEHVISPAAEWLVDNFHIVEEQ
                     VREIREDLPKSYYFELPKLAAGDFKNYPRIYALSIALIGHADSHLDTEMLRRFINAYQ
                     KVMPLSIGELWAVPITLRLALVENLRRLAMRIVKSRTERDDADKLADKLLELAQRQPG
                     ELLSLLTSRLGKRKPIGRAFIVQLTQRLREQDPAVMPVFEWLEKQLVKRGVTIEQIVH
                     EEHHRQASAQVTVGNIITSMRLLSTLDWKDFFETVSLIDPELGKDPAGVYAQMDFATR
                     DRYRHVIERVSKGAKKSELDVARAALQMAEATRNSGEAASHSHVGYFLIGDGVHRLEG
                     QLSYRPRLSETVLRAAQRHATFAYLGMLALLIALIVGFIVIAALGTHGSIAVTV"
     gene            complement(1487..1906)
                     /locus_tag="VHD88_08390"
     CDS             complement(1487..1906)
                     /locus_tag="VHD88_08390"
                     /inference="COORDINATES: protein motif:HMM:NF021384.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2085 domain-containing protein"
                     /protein_id="HVS21851.1"
                     /translation="MIIAAPLADANGHPAFAFTIYKAFSFVCHQIPERSFHLGEHQFA
                     VCSRCTGLYSGFAMAALVYPLARSLKRTDTPRRLWLLLAPLPLAIDFSLTYFGIWSNT
                     HVTRFSTGALLGAVAVFYVMPGLIELSSAITRWFSRE"
     gene            complement(2049..>2711)
                     /locus_tag="VHD88_08395"
     CDS             complement(2049..>2711)
                     /locus_tag="VHD88_08395"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: protein motif:HMM:NF015290.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042132 - fructose 1,6-bisphosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_process: GO:0006071 - glycerol metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-bisphosphatase class II"
                     /protein_id="HVS21852.1"
                     /translation="APDIYMDKIVVGPSSRGVIDIDAPVKDNLRNIARRLGRDVEDLT
                     IIVLDRPRHKKIIDDVRAAGARIRLISDGDLSAGISAAVAGTNIHACIGIGGAPEGVL
                     TAAAIKCLNGEIQARLVFDPERLGVDKGKVPPAEQVIERLKSMGIKDHNKTYDTDDLA
                     PGKKIIFAATGVTDGALMRGVRFFGSGKRTHSLVMTSESKHIRFVDTMHIEGGPDTVI
                     RF"
BASE COUNT          581 a          778 c          790 g          562 t
ORIGIN      
        1 cacagtgacc gcgatacttc catgtgtccc gagcgccgcg atcacaatga agccgacaat
       61 caacgcgatc agcagggcca gcattcccaa ataagcaaag gttgcatggc gctgggccgc
      121 gcggagtacc gtttcgctca gacgcggtcg ataggataat tgcccctcca gccgatgaac
      181 gccgtcgcca atcagaaaat agccgacatg cgaatgcgaa gcggcctcgc ctgagttgcg
      241 tgtcgcttcg gccatttgca gcgctgcgcg cgcaacgtcg agttcgctct tcttcgcgcc
      301 cttgctgacg cgctcgatga cgtgccgata gcgatcgcgc gtcgcgaaat ccatttgcgc
      361 ataaacgccc gccgggtctt tgccaagttc cggatcgatt aggctgactg tctcaaagaa
      421 atctttccag tcgagcgtcg aaagcagacg catgctggtg ataatgttgc caaccgtgac
      481 ctgcgccgag gcctggcggt ggtgctcttc gtggacaatc tgttcaatcg tcacgcctct
      541 cttgaccagt tgcttttcca accactcgaa gaccggcatc accgccggat cctgctcgcg
      601 caggcgctgc gtcagttgca cgatgaacgc ccggccaatc ggtttgcgtt tgcctagacg
      661 cgacgtgagt agcgatagca gctcgccagg ttgtcgctga gcgagttcca gcaacttgtc
      721 ggcgagtttg tccgcgtcgt cacgttccgt gcgcgacttc acgattcgca ttgccagccg
      781 gcgcaggttt tcgaccagcg cgagccgcag agtgatcggc acggcccaca actcgccgat
      841 cgaaagcggc ataactttct gataggcatt gatgaaacgc cgcagcatct cagtgtcgag
      901 atgactgtcg gcgtgcccga tcagcgcgat ggaaagagca tagatgcgcg gatagttttt
      961 gaagtcgccg gcggcgagtt ttggcagttc gaagtaataa ctcttcggca agtcttcgcg
     1021 aatttcgcgc acctgctctt cgacgatgtg aaagttgtca accagccact cggcggcggg
     1081 agagatgacg tgttcttcgc ggatcgattc agcgagggat ttgtagcagg cgagcagccg
     1141 ccggccgttc tcttccagac gcggcagcag caagctgacg cgctgcggct tttccgaaat
     1201 ctggtgttcg gcggcgagtg cggcggcgta atgttccaga cgctcgacac tgtacaactc
     1261 cgcgcgaatg ggtaactcgc cgcccgcgtc gggcgcgcgc gtcaatctac gggtcaatgc
     1321 tgaaaacagc gatgccatag tcatcgacct gcgggggaag tttgcgggaa aattttggct
     1381 aggatatcac ggcacggtgt cagtaccacc tgcggtagcg ggtgggtgcc atattgttgt
     1441 cagcactacc cgcggtagcg ggcggttgat cgcctgccgg aactcttcat tctcgactaa
     1501 accatcgcgt gatcgcggaa cttaattcaa tcaatccagg catcacatag aacacggcca
     1561 cggcgcccag cagcgcgccg gtcgagaagc gcgtcacgtg agtgttcgac cagatgccaa
     1621 aataagtcag cgagaaatcg atcgcgagcg gaagcggagc gagaagcaac caaagccgtc
     1681 gcggcgtgtc agtgcgtttc agcgaacgcg ccagagggta aaccaacgcg gccatcgcaa
     1741 accctgaata caatccggtg cagcgcgaac agaccgcgaa ttgatgttcg ccgagatgaa
     1801 atgaacgttc aggaatttga tgacaaacga agctgaaggc tttgtagatt gtgaaggcaa
     1861 aagcaggatg gccgttagcg tccgccagcg gcgcggcgat gatcaaacct acaatcgtga
     1921 gcgcgattgt ggtagtgaga gcccaaatgc ctaaagagcc agaggctaga ggctggagac
     1981 tggaggctgg ttgaatagtt tcgtagttct gcaccagcct caagcctcta gtctctagtc
     2041 tctagccgct aaaatctaat cactgtatcc ggcccgcctt cgatgtgcat cgtgtcgaca
     2101 aagcgaatgt gtttcgactc gctggtcatt accagcgaat gcgtgcgttt gccggaacca
     2161 aagaatcgca cgccacgcat cagcgctcca tcggtaacgc cggtggcggc gaagataatc
     2221 ttcttgccgg gcgcgaggtc atcggtgtcg taagtcttgt tgtgatcctt tatgcccatc
     2281 gacttgaggc gctcgatgac ttgctcggcc ggcggcactt tgcctttgtc cacgccgagt
     2341 ctttctggat cgaaaaccag acgtgcctga atctctccgt tcagacattt gatcgccgcc
     2401 gccgtcaaaa cgccttcggg cgcgccgccg ataccgatgc acgcgtgaat gtttgtgccg
     2461 gctaccgccg cagaaattcc cgctgaaaga tcgccgtcag aaatcaaacg aatgcgcgcg
     2521 ccggcggccc gcacatcgtc gattatcttt ttgtggcgcg gacgatccag aacgattatc
     2581 gtcaagtctt cgacgtcgcg acccagacgc cgcgcgatgt tgcgcaggtt gtctttcacc
     2641 ggagcgtcga tatcgatgac gccgcgcgac gacggcccga caacgatctt gtccatgtag
     2701 atatccggcg c
//
LOCUS       DASZZE010000437         8346 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_257550, whole genome shotgun sequence.
ACCESSION   DASZZE010000437 DASZZE010000000
VERSION     DASZZE010000437.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8346)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8346)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8346
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_257550"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1081
                     /locus_tag="VHD88_08400"
     CDS             <1..1081
                     /locus_tag="VHD88_08400"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF004739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit D"
                     /protein_id="HVS21853.1"
                     /translation="MTLNMGPQHPSTHGVLRVVLKLDGETVIDLDCDIGYLHRGMEKI
                     AENRTYAMIAPYWDRLDYIAAVSNGLVWVETVEQMMGLDVPRRAHYIRTILTELNRIA
                     SHLLWLGTHALDIGAVTILLWAFREREEILKIFERQFGARLTCHAWRIGGMPNDAYDD
                     FESDVRRFIGNIAGRLDEYETVLSENRIWLSRTVGIGVITGEDAIAIGLSGPSLRGSG
                     VAWDIRKSRPYAAYADMDFDVPLGENGDTYDRYLVRMEEMRQSRRIVQQAIDNLPDGP
                     VNAKVPKLIKPPVGDYYHSIEGPKGEIGCYLVSDGTQQPWRMRVRPPCFMNLQALKQL
                     CIGHLVADVVAIIGTLDIVLGEIDR"
     gene            1078..2403
                     /gene="nuoH"
                     /locus_tag="VHD88_08405"
     CDS             1078..2403
                     /gene="nuoH"
                     /locus_tag="VHD88_08405"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF004741.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HVS21854.1"
                     /translation="MIQFALLAPINLIDSLLLKFFSEQTVNYVIWPFIQIGAVVTITA
                     GWVAYATYLERKISAFMQARLGPMRVGPWGLLQPIADGLKLLVKEDFIPENADRWVFF
                     VAPYIAVVAAFVVMAVVPFGPDWAVITDVNIGILFVLAVSSVGVLATILAGWSSNSKY
                     ALLGALRSSAQMVSYEVSMGLSIIGALMFARTLSLSGIVAAQQSDSIWFLVYQPIGFV
                     IFVISGIAENNRAPFDLPEAESELVAGFHTEYSGFRWSLFFMAEYTAMVVVTAVATTL
                     YLGGWYFPFVYRFTEARGFHNAYVVVSLIAFLAKAGVLLYLYFWLRWTLPRFRYDQLM
                     DIGWKWLLPASLINIVLSGVAIFTLQGLDGWGGRHTIDSIAHGLNLTVSGKVIAIVFG
                     FGNLFLTAGILSLINWRSRDFNLTKQRRKIRLVDLPKGKPAIAPAVTES"
     gene            2501..3034
                     /locus_tag="VHD88_08410"
     CDS             2501..3034
                     /locus_tag="VHD88_08410"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit I"
                     /protein_id="HVS21855.1"
                     /translation="MPLVPVPRPTFAQKLKRFFMVDLIKGLGLTFKFNVGALTDKDAV
                     AGKGIYTEQYPKVRPDVAPRFHGAPRLNMDPETHDTLCIACNLCALACPEDCIDVIAM
                     DVEIIVAGKPRRKKVLDEFIFDTSRCMFCALCQEACPTYCLELTQDFELATYSRAGFV
                     WNREMLEQGRETVKYER"
     gene            3083..3775
                     /locus_tag="VHD88_08415"
     CDS             3083..3775
                     /locus_tag="VHD88_08415"
                     /inference="COORDINATES: protein motif:HMM:NF012709.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HVS21856.1"
                     /translation="MAQAQFIVHRSAFIIMILSGWESVFFWIFSLAAILAGLLTVMAR
                     NAVHSALFLISSLVSVAALFILLGAEFIAGVQILVYVGGVMVLFLFVIMLVNVGAEEE
                     GRAAIFNRTPQVAAALVLSLLLVLGLLIAINRGFQGLQKRDATKLEQANEQREEREQN
                     QQIGATGVSRLTTETERVGGSLYTYASLPFEIASVLLLVAIIGSVMLARTLKQEIAAD
                     DVDLEVAKQVGE"
     gene            3917..4258
                     /gene="nuoK"
                     /locus_tag="VHD88_08420"
     CDS             3917..4258
                     /gene="nuoK"
                     /locus_tag="VHD88_08420"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF004322.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HVS21857.1"
                     /translation="MAIEGMKHPDLSKFLVIAAILFIIGVAGVLTRRNIIVIFMSIEL
                     ILNAANLNFIAFSRYLQDTGGTNPLAGQVFTVFIIVVAAAEAAIGLGIVIALYRNRET
                     IWVDEIDLMKW"
     gene            4342..6660
                     /gene="nuoL"
                     /locus_tag="VHD88_08425"
     CDS             4342..6660
                     /gene="nuoL"
                     /locus_tag="VHD88_08425"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF005141.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HVS21858.1"
                     /translation="MYRFIWLVPLLPLAGAAVNGIFGRWFRFPEELIGGIAVGSVALS
                     FLISVAAIYSYGFSSNAVWPNPYVTTQAVFTWIPGGAVSQTLGYAPQGSGPSTTISIA
                     NQPVKVSSPRGSLLNIEWSYQLDPLSAVFMLIVTGVGLCIFVFATGYMHGDAGFYRFF
                     AYMGLFMFSMLVLVMGSNFVIMFVGWEGVGLCSYLLIGYYFNRDEAANASRKAFITNR
                     IGDFGFILAVFAIIATFGSAQYTNVISQAANYPVEALGRWGLMSWIALGLMIGACGKS
                     AQFPLHVWLPDAMAGPTPVSALIHAATMVTAGLYMLTRTNVIFQHSRTMMLVVAIVGA
                     FTAIFAATIGITQNDIKKVLAYSTVSQLGFMFLACGVGAFVIGIFHVMTHAFFKALMF
                     LGAGSVIHGMHHEQDMRRMGNLRKYMPYTYLTFLAGWLAICGIIPFSGFWSKDEILWR
                     TASTNHIPIGWLLWIVGTIAATCTAFYMTRLVAMTFWGKERFGTHEHTPGHEAHEDHP
                     TPGHHAHTPHESPKSMWVPLVVLAILATVGGFVGISTAFTGGKEVGGRMNIVTWLNPI
                     IWNPATRGFGEQPEAAAEQSAVSAQRSASQLSKAEGFNLAEAAQKKLGSETAAEWLFI
                     VISLLVAGIGIGLGFLFYVKDTRLPDVWAARLAPLYRASYNKYWVDEFFGWAFTRRTM
                     DLARAVFAFDSQIVDGGVNGSAWLTRLSSRITGGTDKYFIDGLVNAIAGFVVRFMSPI
                     VRAAQTGLTQNYALVMVIGLLVAVALYLVKVF"
     gene            6688..>8346
                     /locus_tag="VHD88_08430"
     CDS             6688..>8346
                     /locus_tag="VHD88_08430"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HVS21859.1"
                     /translation="MFTHNIISIITCLPAAGAILILGLFKKEQNDLIKKFATVWLALD
                     FVASLFLFTYDRGVGGMQFLEDHQWIPALGARYQMGADGVSVLLIVLTTFLGVLAALS
                     SWKYIAKREKEYYILLLLLQTFVLGVFGSMDLFLFYLFFEVSLVPMYFLIGIWGGENR
                     LYAAIKFFLYTLVGSVVMLLGILKMYFLTQDTMLTGKITQATVDLLAGNKDASAMVAN
                     TLQQAAHNGTGTFNLIYLQAIGSVMDMGTMQVLLFFAFALGFAIKVPMFPFHTWLPDA
                     HVEAPTAGSVILAGVLLKLGTYGFYRFNLPMFPKASADEGFFFSGTNHQFGVRSVMIF
                     LAIVSIIYGALAAMYFVVKRDGDVKKLVAYSSVSSMGIVMLGLFALNPNGINGAVMQM
                     VSHGIYSGALFLLVGIIYERRHTRNVAEFGGLSHVMPGYAAVFLAMAMTAIGLPLLAV
                     FISEFLAMRGAFEANPVWAGWAGLGIILNAGYMLWLYQRMFFGEIENEKNRLLPDLSL
                     REWAYMLPLVIMSLWIGIYPGPFLRYIEKPVNAVVRQLRPNYPVA"
BASE COUNT         1616 a         2149 c         2435 g         2146 t
ORIGIN      
        1 gatgacgctc aacatggggc cgcagcatcc gtccacgcac ggagtgctgc gcgtcgtgtt
       61 gaagctcgat ggcgagacag tgatcgatct cgattgcgat atcggttatc tgcatcgcgg
      121 catggaaaag attgccgaga atcgaacgta cgcgatgatc gcgccttact gggatcggct
      181 cgattacatc gccgcggttt cgaacggatt ggtttgggtt gagacggttg agcagatgat
      241 gggcctcgat gttccgcggc gagcccatta cattcgcacg atcctgactg agttgaatcg
      301 cattgcgtca catctgttat ggctgggcac gcatgcgctg gacatcggcg cggtaacaat
      361 tctgctgtgg gcgtttcgcg agcgcgaaga aatcctgaaa atcttcgagc ggcagtttgg
      421 cgcgcgcctt acctgtcatg cctggcgcat cggcggtatg ccgaatgacg cgtacgatga
      481 tttcgaatcg gacgtgcgcc gctttattgg aaacatcgca ggacgtctag acgaatatga
      541 aactgtgctt tccgaaaatc gcatctggct aagccgcacc gtgggcatcg gcgtgatcac
      601 aggtgaagac gcgattgcga tcggtctctc gggcccgtct ctccgcggtt caggcgtagc
      661 gtgggacatt cgcaagtctc gcccgtacgc agcgtatgcc gatatggatt tcgatgtgcc
      721 gctgggcgag aacggcgata cttacgatcg ttacctggtg cgcatggaag agatgcgtca
      781 atcgcgtcgc atcgtccagc aggcgatcga caatctgccc gacggtcccg tgaatgcgaa
      841 ggtgccgaaa ctaatcaagc cgcccgtcgg cgattactat cattccatcg agggaccaaa
      901 gggcgaaatt ggttgctatc tggtttctga cggcacgcaa caaccgtggc gcatgcgcgt
      961 gcgtccaccg tgcttcatga acttgcaggc tttgaaacag ctttgcatcg gtcatcttgt
     1021 ggctgacgtg gtggcgatca tcggaactct cgatatcgtt ttgggagaga ttgacaggtg
     1081 attcagttcg cgctgttagc gccgatcaat ttgatcgaca gcctgctgct caaatttttc
     1141 agcgagcaga cagtcaacta tgttatctgg ccgtttattc agatcggcgc ggtggtgacg
     1201 atcacagccg gttgggtggc ttacgcgact tacctcgaga ggaaaatttc ggcattcatg
     1261 caggcgcgtc ttgggccgat gcgcgttggg ccatggggac tcttgcagcc aatcgccgat
     1321 ggattgaagc ttttggtgaa agaagatttc atccccgaga atgccgatcg ctgggttttt
     1381 ttcgtcgcgc cttacattgc cgtcgtcgcc gcgttcgtag tcatggccgt agttcctttc
     1441 ggtcctgatt gggcggtgat cacggatgtt aacatcggaa tactcttcgt gctggcggtt
     1501 tccagcgttg gcgtgctcgc gacgattctt gcaggctggt cgtcgaattc gaagtacgcg
     1561 ttgctaggtg cgttgcgctc gagcgcgcag atggtttcat acgaagtttc gatgggcctt
     1621 tcgatcatcg gcgcgttgat gtttgcgcgc acgttgtcac tttcgggaat cgtagccgcg
     1681 cagcaatcgg actcgatctg gtttcttgtt tatcagccga ttggctttgt gattttcgtt
     1741 atcagcggca tcgccgaaaa caatcgcgcc ccgttcgatt tgccggaagc ggaatcggaa
     1801 ttggtggccg gctttcacac tgagtattcg ggtttccgct ggtcgctgtt tttcatggcc
     1861 gagtacaccg caatggttgt ggttacggcc gtggcgacca cgctctatct tggcggttgg
     1921 tattttccgt tcgtttatcg attcaccgaa gcccgcggtt ttcacaacgc ttacgtcgtc
     1981 gtcagcttga tcgcgtttct tgcgaaagcg ggcgtgctgc tttatctcta tttctggttg
     2041 cgctggactc tgccgcgctt tcgctacgat cagttgatgg atatcggttg gaagtggctt
     2101 ctgccggcgt cgctaatcaa catcgttctt tccggcgttg caatcttcac gctgcaaggg
     2161 ctcgacggtt ggggcggaag gcacaccatc gactcgattg cgcacggttt gaatctgacg
     2221 gtgagcggca aagtgattgc catcgtgttt ggctttggca atttgtttct gacggcggga
     2281 attctgtctt tgatcaattg gcgttcgcgc gatttcaatt tgacgaaaca gcggcggaag
     2341 attcgtctgg tggatttgcc gaaagggaag ccggcgatag cgccggcggt gaccgagtca
     2401 tagaggtggc acagacttta gtctgtgttt ggtggggaat cacagactga agtctgtgcc
     2461 acaaattgcc aaaccagtat ttgaaatcta agattccaat atgccattag tacctgttcc
     2521 aagaccgacg ttcgcacaga agctgaaacg cttcttcatg gtcgatctaa taaaagggct
     2581 cggcctgact tttaagttca acgttggcgc gctcacggac aaggacgcgg ttgccggaaa
     2641 gggcatctac accgaacaat atccgaaagt gcgtccagac gtggcgccgc gttttcatgg
     2701 cgcgccgcgt ttgaacatgg atccggaaac acacgacacg ctttgcatcg cgtgcaacct
     2761 gtgcgcgctc gcgtgtcccg aagactgcat cgatgtaatc gcgatggacg tcgagatcat
     2821 cgtcgcagga aaaccacggc gcaaaaaagt tctggacgag tttattttcg acacttcgcg
     2881 gtgcatgttc tgcgcgcttt gccaggaggc gtgtccgacg tactgtcttg agttaacgca
     2941 ggactttgag ttggcgactt actcgcgcgc gggtttcgtt tggaaccgcg agatgctcga
     3001 gcagggccgc gagacagtca agtatgaacg atgaacgcgg aacgatgaat caagaacacc
     3061 gatcttggtt ccgttgctca ccgtggccca agctcagttc atcgttcatc gttcagcttt
     3121 catcattatg attctttccg gctgggaatc agtcttcttc tggatctttt cgctcgcggc
     3181 gatcttggcg ggtctcttga ccgtcatggc gcggaacgcg gtgcactctg cgttgtttct
     3241 gatctcttcg ctggtgtccg tcgctgcgct cttcattctt ctcggcgccg aattcatcgc
     3301 cggcgtccag attctggtgt acgtgggcgg cgtgatggtt ttgttcttgt tcgtcatcat
     3361 gctggtcaac gtgggcgccg aagaagaagg tcgggccgcg atcttcaatc gtacgccgca
     3421 agttgctgcc gcgttggtgc tctcgctgct gcttgtcctc gggttactta tcgcgatcaa
     3481 tcgcgggttt caaggtctgc agaagcgaga cgcaaccaag ctggagcagg caaatgagca
     3541 acgtgaagaa cgagaacaga atcagcagat cggcgcgacc ggtgttagtc gactcaccac
     3601 agaaaccgaa cgcgtcggcg gcagcttgta cacttacgca tcgcttccat ttgaaatcgc
     3661 gagcgtgctt ttgctggttg cgatcatcgg ctcagtcatg ctggcgcgaa cactgaaaca
     3721 ggaaatagcc gctgacgacg ttgatcttga agttgcgaaa caagtgggcg agtgacaaat
     3781 gctctcagtg aggttaggca cgaaatactt atagcacggc gatgtctagt attgattagc
     3841 tgaaccagaa acgatgaatc atctatcgcc attgtttgca ttgttgctcc aggagccttc
     3901 cggtgggcgg gtgtcaatgg caatagaggg catgaagcat cccgatcttt caaagtttct
     3961 ggtgatcgcc gcgatacttt tcatcatcgg cgttgcgggc gtgctgacgc gccgcaacat
     4021 catcgtcatc ttcatgtcga ttgaattgat cttgaatgcg gcgaatctca atttcatcgc
     4081 attctcgcgt tatttgcagg acactggcgg cacaaacccg ctcgcggggc aggtgttcac
     4141 agtctttatt atcgtcgtcg ccgccgccga agcagcgatt ggactcggca tcgtcatcgc
     4201 gctctatcgt aatcgcgaaa cgatttgggt ggacgagatt gacttgatga agtggtgagt
     4261 ctgtaggggc agggcttgtc cccgcccgtc tttcgatatt cggtctcaaa cgggcaggga
     4321 cgagccctgc ccctacaata aatgtacagg ttcatctggc tagttccatt gcttccgctc
     4381 gcgggcgctg ccgtcaacgg catcttcggc cgttggtttc ggtttcccga agagttgatt
     4441 ggcggaattg ccgtcggctc ggtggcgctg tcgtttctga tcagcgtcgc ggcgatctat
     4501 tcgtatgggt ttagcagcaa tgcagtctgg cccaatcctt acgtcacgac tcaggccgtg
     4561 ttcacgtgga ttcccggtgg cgccgtaagc caaacgctgg gatacgcgcc gcaaggttca
     4621 ggcccgtcaa cgacgatctc gatcgcaaat cagccggtga aagtctcgtc accgcgcggc
     4681 tctctgctca acattgagtg gagctatcaa ctcgatccgc tctcggccgt gttcatgctg
     4741 atcgttaccg gcgtcggtct ttgcatcttc gttttcgcga ccggctacat gcacggagac
     4801 gcgggcttct atcgtttctt tgcctacatg ggtctgttca tgttttcgat gctcgtgttg
     4861 gtgatgggct cgaatttcgt gatcatgttc gtcgggtggg aaggcgtcgg tctctgttct
     4921 tacttactga tcggctatta cttcaatcgc gatgaagccg cgaatgcttc acgaaaagca
     4981 ttcatcacga atcgcatcgg cgactttggt ttcatcctgg ccgtctttgc gattatcgcg
     5041 acgtttggga gcgcgcaata cacgaacgtg atttcgcaag ccgcaaacta tccggtcgaa
     5101 gcgctgggcc gctggggatt gatgtcgtgg atcgctttgg gattgatgat cggcgcgtgc
     5161 ggcaagtcag cgcagtttcc tttgcacgta tggcttccgg atgcgatggc tggtcccacg
     5221 ccggtttcgg cgttgattca cgcggcgacg atggtcactg cgggcttgta catgctgacg
     5281 cgcaccaacg tgatctttca gcattcgcga acgatgatgt tggtcgtggc aattgtcggc
     5341 gcgttcactg cgatctttgc cgcgacgatt ggcattactc aaaacgacat caagaaagtt
     5401 ttggcttact cgaccgtctc gcagctcggt ttcatgtttc tcgcgtgcgg cgtgggcgcg
     5461 tttgtgattg gaatctttca cgtgatgacg cacgcgttct tcaaagcgct gatgttcctc
     5521 ggcgctggca gcgtcatcca cggcatgcat cacgaacaag acatgcggcg catgggcaat
     5581 ctcaggaagt acatgccgta cacgtacctg acgttcctgg ctggttggct cgcgatctgc
     5641 ggcatcattc cgttcagcgg cttctggtcg aaagacgaaa ttctttggcg gacggcctcg
     5701 accaaccaca ttcctatcgg gtggctgctg tggatcgtcg gcacgatcgc tgcgacgtgc
     5761 acggcgttct acatgacgcg cttagtcgcg atgacgtttt ggggaaagga aaggttcggt
     5821 acgcacgaac acacgccggg gcacgaggcg catgaggacc acccaacgcc cggacatcac
     5881 gcgcacacgc cacacgaatc gccgaaatcg atgtgggtgc cgctggttgt gctggcgatt
     5941 ctcgcgaccg ttggcggatt cgtcggcatc agcacagcgt ttaccggcgg caaggaagtt
     6001 ggcgggcgaa tgaacatcgt cacttggctc aacccgataa tctggaatcc agcaacgcgt
     6061 ggatttggtg agcaaccgga agcggcggct gagcagtcag cagtcagcgc tcagcggtca
     6121 gcaagccagc tttcaaaagc tgaaggtttc aatctcgcag aggcagcgca gaaaaaactc
     6181 ggtagcgaaa ccgccgccga gtggctattc attgtgatct cgctcctggt cgctggcatc
     6241 ggtatcggac ttggttttct cttctatgta aaggacacgc gactgcctga cgtttgggct
     6301 gcgcgtctcg ctccgctata tcgtgccagt tacaacaagt attgggttga cgaattcttc
     6361 ggctgggcgt tcacgcggcg cacaatggat ctggcgcgcg ccgtttttgc atttgattca
     6421 caaattgttg atggcggcgt caacggctcc gcctggctga cgcgtctatc gagccgcatc
     6481 accggcggca ctgacaagta ctttatcgac ggcctcgtta acgcgatcgc tggatttgtt
     6541 gtgcgattca tgtcgccgat cgtgcgcgcg gcgcagacgg gcttgacgca aaactacgcg
     6601 ttggtaatgg tgattggtct gctcgtcgcc gtggctctct acttggtcaa agtattctga
     6661 cgatccgctt aactcgcgag gactgacgtg ttcactcata acatcatttc aatcatcacg
     6721 tgtttgccgg cggccggcgc gatcttgatt ctcggtctgt tcaagaaaga gcagaacgat
     6781 ctgatcaaga agttcgcgac cgtttggctc gcgctcgact ttgtagcttc gttgttcctt
     6841 tttacctatg accgcggcgt tggcggcatg cagtttctcg aagatcatca gtggattccg
     6901 gcgctcggcg cgcgctatca gatgggcgcg gacggcgtct cggtgctgct gatcgtgctg
     6961 accacgtttc tcggcgtgct ggccgcgctg tcatcctgga agtacattgc gaagcgcgaa
     7021 aaggaatatt acattctgct tctgctgtta cagacttttg tcctcggcgt ctttggatcg
     7081 atggatcttt tcctgttcta tcttttcttc gaagtatcgc tggtgccaat gtatttcctg
     7141 atcggaattt ggggcggcga gaatcgtttg tacgcggcca tcaagttctt tctctatacg
     7201 ctcgtcggtt cggtagtaat gttgctgggt attttgaaaa tgtacttcct gacgcaagac
     7261 acgatgctga ctgggaagat tactcaggcg acggttgatc tgctcgccgg caacaaagac
     7321 gcgagtgcga tggtcgcgaa cacacttcag caagcagcgc ataacggaac cggcacattc
     7381 aatctgatct atctgcaagc gattggctcg gtgatggaca tgggcacgat gcaggtgctt
     7441 ctgttctttg ccttcgcgct cggctttgcg attaaggtgc cgatgtttcc gttccacacg
     7501 tggctgcccg acgcgcacgt cgaagcgccg acggccggtt cagtgatcct tgccggcgta
     7561 ctgctcaagc tgggaacgta cggcttctat cgttttaact tgccgatgtt tccgaaagcg
     7621 tcagcggatg aaggtttctt tttttccggc actaatcacc agttcggcgt acgaagcgtg
     7681 atgatctttc tggccattgt ctcaataatc tatggggcac ttgccgccat gtatttcgtc
     7741 gtgaagagag acggcgacgt caaaaagctg gtcgcgtact cgtccgtgtc gtcgatggga
     7801 atcgtgatgc tcggtctgtt cgcgctgaat ccaaatggta taaacggcgc ggtgatgcaa
     7861 atggtcagtc acggaattta ttcgggtgcg ctcttcctcc tggtaggaat aatttatgag
     7921 cgacgccaca cccgcaacgt agccgagttc ggcggactgt cacacgtgat gcctggatat
     7981 gccgcagtat ttctggcgat ggcgatgacg gctatcggtc tgcctttgct ggcagttttc
     8041 atttctgaat ttctggcgat gcggggcgcg ttcgaagcca atccggtctg ggccggctgg
     8101 gctgggctgg gaattattct gaacgcggga tacatgctct ggctttacca gcgaatgttc
     8161 tttggcgaaa tcgaaaacga gaagaacagg ctactgccgg atctgagcct gcgcgagtgg
     8221 gcgtacatgc tgccgctggt catcatgtct ttgtggattg gtatctatcc gggcccgttc
     8281 cttcgttata ttgaaaagcc ggtcaatgcg gtagtaaggc aactgcgacc gaactatccg
     8341 gttgcg
//
LOCUS       DASZZE010000438         1699 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_224531, whole genome shotgun sequence.
ACCESSION   DASZZE010000438 DASZZE010000000
VERSION     DASZZE010000438.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1699)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1699)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1699
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224531"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            133..>1699
                     /gene="lepA"
                     /locus_tag="VHD88_08435"
     CDS             133..>1699
                     /gene="lepA"
                     /locus_tag="VHD88_08435"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor 4"
                     /protein_id="HVS21860.1"
                     /translation="MDPQRIRNFSIIAHIDHGKSTLADRFLELTGALQAREMEAQVLD
                     TMDLERERGITIKAHAVRLDYQAEDGQAYVLNLIDTPGHVDFSYEVSRSLSACEGALL
                     VVDASQGVEAQTLANTYLALENNLQLIPVINKIDLPGAEPDKAIEQIEHVIGLETHNA
                     VFTSAKTGKGVHEVLEAIVRDVPPPKGDADAPLKALIFDSWYDSYRGVIVLFRIIDGA
                     LRTGMKIRFFNTGRDYQVETLGVNRPRPTPIDELSVGEVGFLTASIKEVADVQIGDTI
                     TESARPTTEPFPGFQEIKPMVFAGLYPVDTNQYEELRDALDRLRLNDASFFYEPESST
                     ALGFGFRCGFLGLLHMEIVQERLEREFNLSLITTAPSVRYVVTTTDGQVAEIDSPAKM
                     PDAGRIVKIEEPVIRAVILSPDDYLGGILPLLEEKRGIQKGFEYIASNRVMLTYELPL
                     NEIVMDFYDRLKSVSRGYASLDYNLADYWESDLVKLDVMVAGEPVDALSLILHRSTAQ
                     AKGRLLTEKMKQLI"
BASE COUNT          352 a          495 c          489 g          363 t
ORIGIN      
        1 gaagttgctt ggcctcccgc tcgccgaccg ggcctgcctg gcgctcggcc gccttcgacg
       61 cctgccggtt ctgaccgcgg atcgcgcctg gcgttcgccg tcgatttcag tcaagatcga
      121 agtcatccgc tagtggaccc acaacgcatc cgtaactttt cgattatcgc gcacatcgac
      181 cacgggaagt cgacgctcgc cgatcgtttc ctcgagctca caggcgccct gcaggcgcgc
      241 gagatggaag cccaggtcct cgacaccatg gacctcgagc gcgagcgcgg catcacgatc
      301 aaagcgcatg cggtgcgcct ggattaccag gcggaagacg gccaagcgta tgtgctgaat
      361 ctgatcgaca cgccggggca cgtcgatttc tcttacgaag tttcgcgctc gctctcagcc
      421 tgtgaaggcg cgttgctggt tgtcgatgcg tcgcagggag tcgaggcgca aacgctcgcc
      481 aatacttatc tggctcttga aaacaatctg caattgattc ccgtcatcaa caagatcgac
      541 ttgccgggag ccgaacctga caaggcgatc gagcagatcg agcacgtcat cgggctcgag
      601 acgcacaacg ccgtgttcac cagcgccaaa accggcaagg gcgtgcacga agttctcgaa
      661 gccattgtgc gggatgtacc gccgccaaaa ggtgacgcgg acgcgccctt gaaagcgctg
      721 atcttcgatt cctggtacga ctcataccgc ggcgtgatcg ttttgtttcg cataatcgac
      781 ggcgctctgc ggaccggaat gaagatccgc ttcttcaaca ccggccgcga ctatcaggtc
      841 gaaacgctcg gtgtcaatcg tccgcgtccg actcctattg atgaactcag cgtcggcgaa
      901 gtgggttttc tcaccgcctc gatcaaagaa gtcgcggacg tccagattgg cgacaccatc
      961 accgaatcgg cccgccccac cacggagccg tttcccggct tccaggagat taagccgatg
     1021 gtgttcgccg gcctctaccc ggtcgacaca aaccagtacg aagaattgcg tgacgccctg
     1081 gatagattgc gcttgaacga cgcttcgttt ttttacgaac cggaatcatc cacggcgctg
     1141 ggcttcggat ttcgctgcgg ctttcttggc ctgctgcaca tggagatcgt gcaagagcgt
     1201 ctggagcgcg agttcaatct cagtttgatt acgacagctc ccagcgtgcg ttatgtggtg
     1261 acgaccacgg acggtcaggt tgcggaaatt gattctcccg caaagatgcc cgacgcgggc
     1321 cgtatcgtaa aaatcgaaga gcctgtgatt cgtgccgtca tcctctcgcc tgatgattat
     1381 ctgggcggga ttctgccctt gctggaagag aagcgcggca ttcaaaaagg cttcgagtac
     1441 atcgcgtcga atcgcgtgat gctgacgtac gaactgccgc tgaacgagat cgtgatggac
     1501 ttttacgatc gcctgaaatc ggtttcgcgc ggttatgcgt cgcttgatta caatcttgcg
     1561 gattactggg aaagcgatct cgtgaagctt gatgtgatgg tagcaggtga accggttgat
     1621 gcgctttcgc tgattcttca tcgcagcacg gcgcaggcca agggacgcct gctgaccgag
     1681 aagatgaaac aactgatcc
//
LOCUS       DASZZE010000439         1835 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_276012, whole genome shotgun sequence.
ACCESSION   DASZZE010000439 DASZZE010000000
VERSION     DASZZE010000439.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1835)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1835)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1835
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_276012"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..883)
                     /locus_tag="VHD88_08440"
     CDS             complement(<1..883)
                     /locus_tag="VHD88_08440"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HVS21861.1"
                     /translation="MQNHLLTILILLPVIGAATTVAYSFTPGARESHHRWIALGFTTL
                     SFLASLLLIQGAGGGVAAFRLEENYPWIVSIGAHYHVGVDGISLWLVLLTTLLMPIAI
                     LSSWTAIAKRQLTYYVLMLLLESAMIGVFVSLDLLLFYLFFEASLVPMFFLIGIWGGE
                     RRVYAAVKFFIYTAVGSLLMLVGSIALYSIHQRATGIGTFDYAVLTEAMRSGVMQIAP
                     RAEFWLFLAFAFAFCIKVPLWPLHTWLPDAHTEAPTAGSVILAGVLLKMGTYGLLRFN
                     FGLFPNASKQFAPIMITL"
     gene            complement(962..>1835)
                     /locus_tag="VHD88_08445"
     CDS             complement(962..>1835)
                     /locus_tag="VHD88_08445"
                     /inference="COORDINATES: protein motif:HMM:NF013198.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21862.1"
                     /translation="SGAGMPPGFGKALWFIGAVTALLTAVYMTRLMVMTFWGKERFRE
                     KNIEPAPEHEHHAHTPHESPLSMTIPLIVLAVLSTIGGLVGVPYAISSLTGGHPENYF
                     EQTLEPAISAVPDTTSNSAEAATQLRWLSPPPQPVDGKPAFAPTQESNGVGPIPSTEE
                     ISQERLFALISVAIALLGIGIGWLVFQAQPLRQMPRLLENKYYVDEIYDSTIINPIHV
                     GSREGLWKVFDVGVIDGLIHDLGRAVIDFGKTIRYMQIGFVRAYAAIILAGALIIIGY
                     FAYNGAHVLRFLAR"
BASE COUNT          464 a          540 c          498 g          333 t
ORIGIN      
        1 caagcgtgat catgatcggc gcgaactgct tcgacgcatt cgggaacaat ccaaaattga
       61 atcgcagtaa tccatacgtg cccatcttca agagcacgcc ggcgagaatt actgagcctg
      121 cggtgggcgc ttcggtgtgg gcgtccggca gccacgtatg cagcggccat agcggcacct
      181 tgatacaaaa cgcaaaagcg aaggccagga acaaccagaa ctccgcgcgc ggcgcgatct
      241 gcattacgcc gcttcgcatg gcctcagtga gcacggcgta gtcaaacgtt ccaatcccgg
      301 tggcgcgctg atgaatggaa tagagggcga tgctgccgac cagcatcaaa agcgatccga
      361 ccgcggtgta gatgaaaaac ttgactgcgg catagacgcg tcgctcgccg ccccagatcc
      421 cgataagaaa gaacatcggc accagcgagg cttcgaagaa aagatagaag agcagcaggt
      481 cgagcgagac gaagacgccg atcatcgccg actccagcag taacatcaaa acgtaatagg
      541 tcagctgccg ctttgcgatt gccgtccagc tcgaaaggat agcgatcggc atcaacagcg
      601 tcgtcaacaa aaccagccag aggctgatgc cgtcaactcc gacgtgataa tgcgcgccga
      661 tcgaaacgat ccatggatag ttctcttcca gccggaacgc cgcgacacct ccacccgcac
      721 cctggatcag taacaacgac gcgagaaatg aaagcgtcgt gaagcccagc gcaatccagc
      781 gatgatgcga ttcgcgagcg ccgggcgtga aactgtacgc cacggtcgta gccgcgccga
      841 tcaccggcag aaggatcagg attgtaagca gatgattctg cataagcctt ttacggaacc
      901 gcttgcggta gcaagcgggc tctttgaaat tacccgctcg ctaccgcgag cggttctgta
      961 cctatctcgc caaaaacctc aacacatgcg ccccgttata agcaaagtag ccgataataa
     1021 tcagcgcgcc cgccaaaatg attgccgcat aagcgcgaac aaagccgatc tgcatgtaac
     1081 gaatcgtctt tccaaaatca attacggcgc gacccaggtc gtgaatcaag ccatcaatca
     1141 ctccgacatc aaagaccttc cacaaacctt cgcgcgaacc gacgtgaatt ggattgataa
     1201 tcgtggagtc gtaaatttcg tcaacgtagt acttgttttc caaaagccgc ggcatctgcc
     1261 gcagcggctg cgcctgaaat acgagccatc caatcccgat tccaagcaag gcgattgcaa
     1321 ctgagatcag agcgaacaga cgctcctgcg agatttcctc cgtgctggga atcggcccaa
     1381 caccattcga ttcctgcgtg ggcgcaaatg ccggcttgcc gtcaaccggc tgcggcgggg
     1441 gcgagagcca gcgcagttga gtcgccgctt cggctgagtt cgacgttgtg tccgggacgg
     1501 cgctaattgc cggttccagg gtctgctcga aataattttc gggatgaccg ccggtcagtg
     1561 aactgattgc atatggaacg ccaaccaatc cgccgatcgt tgaaaggact gcgagcacga
     1621 tcaacggaat cgtcatcgac aaaggcgatt cgtgcggcgt gtgcgcatga tgttcgtgct
     1681 caggcgcggg ctcgatattc ttttcgcgaa agcgctcttt gccccagaac gtcatgacca
     1741 tcaggcgcgt catgtaaacc gccgtcagca gtgccgtcac cgcgccaata aaccagaggg
     1801 ctttgccgaa acccggcggc atgcccgccc cgctc
//
LOCUS       DASZZE010000440         6853 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_64117, whole genome shotgun sequence.
ACCESSION   DASZZE010000440 DASZZE010000000
VERSION     DASZZE010000440.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6853)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6853)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6853
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64117"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..751)
                     /locus_tag="VHD88_08450"
     CDS             complement(<1..751)
                     /locus_tag="VHD88_08450"
                     /inference="COORDINATES: protein motif:HMM:NF033542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HVS21863.1"
                     /translation="MSSTSPSTNIGIDVSKETLDIAVLETETHWTSKHEFAEFPVLIK
                     TLTALKPARIIIEASGGIENLLASYLAAAHLPVIVVNPRQVRDFARATGQLAKTDRLD
                     AFVLARFGATLQPAVRPLKSAETQELEALVARRVQLVNMLTAERIRLQQAQQQRRQSI
                     VADLKAHISWLEKRLDKCEGDLSQLLRASPIWRETDKLLQSVPGVGPITALALIAELP
                     ELGQLTDKQIVALCGLAPHARDSGKWHGKRTT"
     gene            1205..2446
                     /locus_tag="VHD88_08455"
     CDS             1205..2446
                     /locus_tag="VHD88_08455"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HVS21864.1"
                     /translation="MKLFEILKVAVAAIWAHKLRSALTLLGMIVGVTAFVTVVSLIQG
                     FNVYIDEKIAGIGSKSFSIQRFNPFEDFKDTDTIAAAQRRNKDLTLEDYEYLKEHATL
                     INKIGAKARGTPSIVKREDKVLEDVIVIGATANTAEIDNRDIADGRFFTDIENEGAAR
                     VAYIGMDVATKLFPAGNAIGGEITISGLPYRVVGIETARGTVFGIPQDNFIIVPLKTY
                     ADVFGSLIRQRSLYFVATAKSDNLFNDAVEESRFLLRARRKIPFNDKDNFGIVTPDAI
                     TGLRDRIFGTIFIVAIAVPGIALMVGAIVIMNIMLVSVTERTKEVGLRKSLGARRVDI
                     LKQFLFEAVVLATIGGIIGVLLAWIVGKIVTVIFFQTYLSVLAIAFAIGVSGLVGVAS
                     GIFPAWKAARLDPIEALRAET"
     gene            2460..3716
                     /locus_tag="VHD88_08460"
     CDS             2460..3716
                     /locus_tag="VHD88_08460"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HVS21865.1"
                     /translation="MKLLRSDILENLWLALATLRANKLRSFLTIIGVIIGVVTVMLIA
                     SLISGIDSSVRKEVESYGTHSMYISKFNPGIHVGRLSREERMRKPLTYDDAVFLAQLP
                     TVELAVPFLGITNNFFGSKILVSGGGKTSAAVNLEGTLPDFEKAGTQVITEGRFFSQF
                     ENDANDNVCVVGSKVAEDFFKVGSPVGQTIKIGSEEYRVVGVLEKREQFLFSGGSDDQ
                     NNIIYLPFNVARKLKPNSEDIYLLVVAKPGLMPEAMDQVTDALRVRRQVPFSAPDSFG
                     IQTAEGFLTQFRAITSGIAIAMIVISSVGLMVGGIGVMNIMLVSVTERTREIGVRKAI
                     GARRKDILWQFLIEAMTLTGAGGLIGLGIGWLLTLLVKLIMPSYVPWWAPAMGFVASV
                     GIGMIFGLWPAWKAARLDPIESLRYE"
     gene            complement(4002..4769)
                     /locus_tag="VHD88_08465"
     CDS             complement(4002..4769)
                     /locus_tag="VHD88_08465"
                     /inference="COORDINATES: protein motif:HMM:NF016764.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YIP1 family protein"
                     /protein_id="HVS21866.1"
                     /translation="MSDPNQEWQPPPPPPLAETTEPAGETMSTPATLTGIFFEPGRVF
                     EALRVRPRFLIAGIILLILTLGVVGVLYLRVDMGEFIRDQMDKSSQAAQLSPEQKDQR
                     VKIGKIVGAVVFPLIVPISIVAGAALYLVGVMAFGGTIAFKKALAVWVYSSLPPAVLG
                     SVVAVLVLFLKAPETIDPNRLLITNPGAFMGADASPVLVTLLSQFDLLKFYGLFLAAL
                     GLRKVAKVSSGSAWGVVIGFYLIAAVLKIARAAIFGG"
     gene            complement(5019..6035)
                     /locus_tag="VHD88_08470"
     CDS             complement(5019..6035)
                     /locus_tag="VHD88_08470"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015440 - ABC-type peptide transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide/dipeptide ABC transporter
                     ATP-binding protein"
                     /protein_id="HVS21867.1"
                     /translation="MNLKENYKAELVRVRGLVKHFPTDAGVLRAVDGVSFEIFKGETL
                     GLVGESGCGKSTAGRCLLRLIEPTAGEITFDNRDVTKMGKSELRDLRREMQVIFQDPS
                     ASLNPRMKVGDIVAEPLVIHKIGTKEERRERVAWLLGKVGLDADFMKRYSHEFSGGQL
                     QRIGVARALALNPKLIVADEPVSALDVSVQAQVVNLLQDLQKEFGLTYLFISHGLAVV
                     EHISTRVAVMYLGRIVEIANAAELYERPLHPYTQALLSAIPVPDPKEKRERIILKGDV
                     PTARNPPSGCRFRTRCPIAIDECARIDPELFEISPGHSVACIRVEGYGTAPPQSSEPY
                     RAGQ"
     gene            complement(6141..>6853)
                     /locus_tag="VHD88_08475"
     CDS             complement(6141..>6853)
                     /locus_tag="VHD88_08475"
                     /inference="COORDINATES: protein motif:HMM:TIGR01727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HVS21868.1"
                     /translation="PMTSLNPVFTVGEQIAEALRLHRGLSRKDARKGAVAAMREVSIP
                     DPELRVDDYPHQLSGGMRQRVMIAMALACDPKLLIADEPTTALDVTIQAQILELLNGL
                     RKTRDLAVLLITHDLGVVAEVAERVAVMYTGKIVEESPVDELFARPKHPYTEGLLRSV
                     PKLTAQDVAKAERLQTIEGVVPKPTALPPGCHFAPRCPYRMPRCDEGEIPLYDVIPGV
                     TARCVLFDSTLHDTREDD"
BASE COUNT         1511 a         1954 c         1896 g         1492 t
ORIGIN      
        1 gagtggttcg tttgccgtgc cacttgccac tgtcacgagc gtggggtgcc aggccgcaca
       61 gagccacgat ctgtttgtcg gtcaactggc ccaactctgg tagttcggcg attagtgcga
      121 gcgctgtgat cggaccgaca cccggcacgc tctgcagcag cttgtcggtt tcgcgccaga
      181 tcggagaagc acgcagcagt tgcgagagat cgccctcgca tttatcgagt cgcttctcca
      241 gccaactgat gtgggctttc agatcggcaa cgatcgattg gcgacgctgc tgttgcgcct
      301 gttgtaagcg gattcgctca gctgtaagca tgttaacgag ttggacgcgt cgggcaacta
      361 aagcctcaag ttcctgtgtt tccgcagact tgagcggacg cacggcgggt tgcagggtag
      421 cgccgaaacg agccaggaca aaagcatcaa ggcgatcagt cttggccagt tggccagtag
      481 cgcgagcgaa gtcgcgaacc tggcgtgggt taacgacaat aaccggcaag tgggcggcgg
      541 ccagataaga ggccaacaga ttttcaattc cgccactggc ctcaatgatg atgcgcgccg
      601 gcttgagcgc cgtcagcgtt ttaatcagaa ccggaaactc tgcgaactcg tgtttgctgg
      661 tccaatgagt ttcggtttcg agcacggcaa tatcgagcgt ctctttagag acatcgatac
      721 caatgttagt tgatggagat gtggacgaca tgattggctc tttctccttt cggtaatgtc
      781 tctgcggcac ccaggcttgc ggatacgggc tcaattggcc cacgcaactg ttcgggttct
      841 agcaaagaat cggcgtggtg tcacttgcta ttttacggtt tcaacgaacc aggcccagca
      901 acggtctacc acgccgagct aacaaacgat gactctcgat ggagtctata acttgctctt
      961 taagatacaa gcccagcact tcagtgctgg gtcaacgatg aaataggaaa ccagaagccc
     1021 gtgaaacggg cgaccgaaaa ttacggttga gtttagttgc agacttctgc cgtccgcttc
     1081 gcggactaag aaggatcaat aatcgcgccc acccagcgat aaatcgcttg gctattttcg
     1141 tccgtccgcc ctgcggactg ccggaccaga aaccaattca tcgctcttgc cgtactaatt
     1201 cagcgtgaag cttttcgaaa tcctcaaagt tgcggtcgcg gccatctggg cgcacaaact
     1261 gcgctcggcg ctgactctgc tcggcatgat cgtcggcgtc acggcgttcg tcaccgtcgt
     1321 ctcgctgatt cagggcttca acgtttacat cgacgaaaag atcgccggca tcggcagtaa
     1381 atcgttttcg attcagcgct tcaatccttt cgaagatttc aaagacaccg acacgatcgc
     1441 cgccgcccag cgtcgcaata aggatttaac cctcgaagat tacgaatact taaaagagca
     1501 cgcaactctc ataaataaga tcggcgctaa ggcgcgcggc acgccctcca tcgtaaagcg
     1561 cgaggacaag gtgctggaag acgtcatcgt tatcggcgcc acggccaaca ccgccgagat
     1621 cgacaaccgc gacatcgccg acggccgctt cttcaccgac atagaaaacg aaggcgcggc
     1681 gcgcgtggcc tatatcggca tggacgtggc gacgaaactt ttccctgccg gcaacgcgat
     1741 cggcggcgaa atcacgatca gcggactgcc gtatcgcgtc gtcggcatcg agacggcccg
     1801 cggcacagtg ttcggtattc cgcaagacaa cttcatcatt gtcccgttga aaacatacgc
     1861 ggatgttttt ggctcgctga ttcgccagcg ctcgctctat ttcgtcgcga ccgcaaaatc
     1921 agacaatcta ttcaatgacg cagttgaaga atcgcgcttt ctgctaaggg cgcgtcgcaa
     1981 gataccgttc aacgacaagg acaattttgg gatcgtaacg cccgacgcga tcaccggctt
     2041 gcgcgatcgc atctttggga cgattttcat tgtcgcgatc gcggtgcccg gcatcgcgct
     2101 gatggttggc gccatcgtca ttatgaacat catgctggtt tccgtgaccg agcgaacgaa
     2161 ggaggtcggc ctgcgtaaat cattgggtgc ccggcgcgtc gatattttga agcagttttt
     2221 gttcgaggcg gttgtgctgg cgacgattgg tggaatcatc ggagtcctcc tcgcctggat
     2281 cgtcggcaag atagtgacgg ttattttctt tcagacctat ttgtccgtat tggcgatcgc
     2341 ctttgcgatc ggagtctcgg gtcttgtggg cgtggcttcg ggaatctttc ccgcatggaa
     2401 agccgcgcgg ctcgatccga ttgaggcgtt acgagcagaa acgtagctgt cagctaatta
     2461 tgaagctact tagaagcgac attctcgaaa atctctggct ggccctggcg acgctgcgcg
     2521 ccaacaagct gcgctcgttc ctgacgatca tcggagtgat catcggcgtc gttaccgtga
     2581 tgctgatcgc atcactcatt agcggtatcg attcatcggt gcgcaaagaa gtggaaagct
     2641 acggcacgca ttcgatgtac atcagcaaat tcaatcccgg cattcacgtc ggccggcttt
     2701 cgcgcgaaga gcgtatgcgc aaaccgctga cctacgacga tgcggttttt ctcgcgcaac
     2761 tgccgaccgt cgagttggcc gttcccttcc ttggaatcac gaataacttc tttggctcaa
     2821 agattctggt cagtggcggc ggcaagactt ccgccgcggt caatctcgaa ggcacgctgc
     2881 cggatttcga gaaagccggg acgcaagtca tcactgaagg gcgcttcttc tcacaatttg
     2941 aaaacgatgc gaacgacaac gtttgcgtcg ttggctcgaa agtggcggaa gacttcttta
     3001 aagtcggttc gcccgtaggt caaacaatca agattggatc tgaggaatac cgggtcgtag
     3061 gcgtgcttga gaagcgcgag cagtttttgt tcagcggcgg cagcgatgac cagaataata
     3121 ttatctacct gccattcaac gtggcgcgga aactgaaacc aaactcggaa gacatttacc
     3181 tgctggtcgt tgccaagccg ggactgatgc ctgaagcgat ggaccaggtc actgacgcgc
     3241 tacgcgtgcg gcgccaggtg cctttcagcg ccccggatag tttcggaatt caaaccgccg
     3301 aaggctttct tactcagttt cgcgccatca ccagcggcat cgccatcgcg atgattgtga
     3361 tctcgtcggt cggcttgatg gtgggcggca tcggcgtgat gaacatcatg ctcgtgtcgg
     3421 tgaccgagcg cactcgcgaa attggcgtcc gcaaagccat cggcgcgcgc cgcaaagaca
     3481 tcctctggca gtttctgatc gaagcgatga cgctgaccgg cgcgggcgga ctgattggat
     3541 tgggaattgg ttggctgctg acgttgctgg tgaaactgat catgccgtcg tacgtgccgt
     3601 ggtgggcgcc ggcgatgggc tttgtcgcca gcgtcggcat cggaatgatc ttcggactgt
     3661 ggccggcgtg gaaagcggcg cgcctcgatc cgatcgagtc gctgcgttac gaatagacgc
     3721 cgagcaggca gcaaggtgtc cgaaagagtt tgcaggttgt tcaccgtccg cgaagcggac
     3781 gattggaaat agcccagcac ttcagtgctg ggtcacgcat caataagaaa caaaaagccc
     3841 gcgaagcggg cgacagaagt ttgcagtttc tgtcgtccgc tttcgcggac ttcgttttca
     3901 gatttacatc gctcacccag cgatgaatcg ctgggctatt ttcgttcgtc cgcttcgcgg
     3961 acttcggagc aagaagcgtt tctccaaagc atcatacgtc cttaaccacc aaagatcgcc
     4021 gcgcgcgcga tcttgagaac cgctgcaatc aggtagaacc caatcaccac gccccaggct
     4081 gaacctgaag acacctttgc cactttccga aggcccagcg ccgcgagaaa caagccatag
     4141 aacttcaaaa ggtcgaactg gctgagcaag gtaaccagaa cgggggacgc atcggctccc
     4201 atgaacgcac caggatttgt tatcagcaag cggttcggat cgattgtctc cggcgccttc
     4261 aagaacaaca cgagcacggc gacgacgctg ccgagaaccg ccggaggcag cgaggagtaa
     4321 acccaaaccg caagcgcctt cttaaaagcg attgttccgc caaaagccat tacgcctacc
     4381 aagtaaagcg ccgcgcccgc gacaatcgaa atcggaacga tcaggggaaa aacgaccgcg
     4441 ccgactatct tgccaatctt cacacgctga tccttttgct ctgggctcaa ctgagcggct
     4501 tgagacgatt tatccatctg gtcccggatg aactcgccca tgtcaactcg cagatacagc
     4561 acacctacaa ctccgagggt cagtatcagc aggatgatcc ccgcgatcag aaaccgtggc
     4621 cgcacgcgca atgcctcaaa cacgcgaccg ggttcgaaga aaatgcccgt caacgttgcg
     4681 ggagtggaca tggtttcgcc cgcaggctct gtggtctctg ccagcggcgg tggtggtggc
     4741 ggctgccatt cctgattcgg atcgctcatg atcgaaaatc ctcctgttaa gattccgaag
     4801 gacggggaga ctgcgttccg tccgaaatag actgcctatg tttgatgcct gctcttacgc
     4861 gcaagacacg cgcgatgttt catggctcgc gcttcgtagc cttcgttcgc ggcttcgccg
     4921 cctgatgtgc ggaaaggctc tgcctttccg atcctgtcgc taaaatgatt tccgaggcta
     4981 tgcctcgaat tctttccgag ccctccctca cggtcgggct actgccccgc tcgatacggc
     5041 tcgctgctct gcggcggcgc cgttccgtaa ccttctacgc gaatgcacgc gacgctgtgc
     5101 cccggcgaaa tttcgaacaa ctctggatcg attcgggcgc attcgtcaat agcaatcgga
     5161 cagcgcgtgc gaaagcggca gcccgaaggc ggatttctcg ccgtgggcac atcgcccttc
     5221 aaaataattc gttcgcgttt ttctttcgga tcgggaaccg gaatcgccga cagcaacgcc
     5281 tgcgtgtagg gatgcagcgg ccgctcataa agctccgcag cattcgcaat ttcgacgatg
     5341 cgaccgagat acatgaccgc cacgcgcgtc gaaatatgtt cgacaactgc cagcccgtgc
     5401 gagatgaaaa gataggttaa gccaaattcc ttctgcaaat cctgcaacag attcacgacc
     5461 tgcgcctgca ctgaaacatc cagcgccgag acaggctcgt ccgctacgat cagttttgga
     5521 ttcagcgcca gcgcgcgcgc aacgccgatg cgctgcaatt gtccgcctga gaattcatgg
     5581 ctgtaacgct tcatgaaatc cgcatcgaga ccgaccttgc cgagcagcca cgccacgcgc
     5641 tcgcgtcgtt cctctttcgt ccctatcttg tgaatcacca gcggctcagc aacgatgtcg
     5701 ccgactttca tgcgcggatt gagcgacgca gaaggatctt gaaaaatgac ttgcatctcg
     5761 cgccgcagat cgcgcagctc gctcttgccc atcttcgtga catcccgatt gtcgaaagtg
     5821 atctcgcccg cagtcggttc gattagacgc aggaggcaac gtccggcagt cgatttacca
     5881 caacctgatt cgcccacgag tccaagcgtc tcgcctttga agatttcaaa agaaactcca
     5941 tcaaccgctc gcagcacgcc agcgtcggtc ggaaaatgct ttaccaggcc gcgcacgcgc
     6001 acgagttcgg ctttgtaatt ttctttcagg ttcactgtgg tgaatcaaat ttcaccacag
     6061 aggcacagag ttcacgcaga gagccacaga gttattgatt ggttctctgt gaagctctgt
     6121 gaccctctgt gtctctgtgg ttaatcatcc tcgcgggtgt catgcagcgt tgaatcaaac
     6181 aagacacagc gcgcggtcac accgggaatc acatcgtaaa gcggaatctc gccttcatca
     6241 cagcgcggca tccgatacgg acagcgcggc gcgaagtgac agcccggcgg cagcgcagtt
     6301 ggctttggca ccacgccttc gatcgtctgc aaccgttcgg ccttcgctac gtcttgcgcg
     6361 gtcagttttg gaactgagcg cagcaagcct tcggtgtacg ggtgcttcgg gcgcgcgaac
     6421 aattcatcca ccggcgactc ttcgacgatc tttcccgtgt acatcacggc gacgcgttcg
     6481 gcgacttcgg caacgacgcc aagatcgtgc gtgatcagaa gcacggcgag gtcgcgcgtc
     6541 ttccgcaatc cattcagaag ctcgagtatc tgtgcctgga tcgtgacatc aagcgctgtc
     6601 gtcggttcgt cggcaatcag caatttcgga tcgcacgcaa gcgccatcgc gatcattact
     6661 cgctgtcgca tgccaccgga aagttgatga ggataatcgt cgacacgcaa ctcaggatca
     6721 ggtattgaaa cctcgcgcat cgcggcgaca gcacctttgc gcgcgtcttt gcgtgaaagt
     6781 ccgcgatgta agcgcaaagc ctcggcaatt tgttcgccaa cggtgaaaac cggattcagc
     6841 gaagtcatcg gat
//
LOCUS       DASZZE010000441         7265 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_224763, whole genome shotgun sequence.
ACCESSION   DASZZE010000441 DASZZE010000000
VERSION     DASZZE010000441.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7265
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224763"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..773
                     /locus_tag="VHD88_08480"
     CDS             <1..773
                     /locus_tag="VHD88_08480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21869.1"
                     /translation="SWACGIALIWFVIGFAGSLGMNFYFHRALYRFVPLFRGMRVATR
                     WSMIGYLGLAMLGGLAASVLADRLISQRNRGRSVVIYGIIILALLFEQRAAPLELVQG
                     EPDPDEVSLRLKDTPMRGGIVELPAGAEGLADHGYMLRAADHGRPLVTAISSYVPPLT
                     QEVEQLAAQRPIPDRFLDLLESIPVSYLVIHDGKLSPESRPDVQRFVVRAVADRRLCY
                     IGSYDQRNDLYAVTKTEPEAKSETPLPFTFSDGRVGPH"
     gene            complement(956..1891)
                     /locus_tag="VHD88_08485"
     CDS             complement(956..1891)
                     /locus_tag="VHD88_08485"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HVS21870.1"
                     /translation="MYKSRRIAVVIPAYNEARHVGQVVAEVPDYVDHVVVVDDCSTDD
                     TPAVIESIGDARVVALRTPKNLGVGGATMLGYERALELGCDIAVKMDGDGQMPPQYVH
                     LLLDAIVERGYAYAKGNRFLAGESLTSMPRHRLFGNVILTFLNKLASGYWHIFDPQNG
                     YTAISAETLRLLNFPSINQRYFFENDMLIELNFHNARVVDVAIPARYGDEVSGLNPIS
                     AAIKFPLLFLPRFWRRIYQKYVLRDFSPIALFLFLGLLLCVWGVGFGAYHWILSVMTD
                     HVATTGTVMLAVLPLILGFQLILEAIVLDIQETPR"
     gene            complement(1786..3774)
                     /locus_tag="VHD88_08490"
     CDS             complement(1786..3774)
                     /locus_tag="VHD88_08490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21871.1"
                     /translation="MRSTLAGKTRDLLLRAEFGDALLVFYFIVLIRPWFWGLENFAAW
                     CLTIPLALIGWYFYISTKEPATERLSLPFWLIVALPLMFVYALRAPFPDVSFDVWSLR
                     LFHGERALRGFLYHPGEFFPTAAPFNPAPDMLTGIFRNLLGYRLGTLINYLVLVWAGT
                     VIDKLLRPHIRRQWLRAAGVLLVLCAEHMLFEINNYMVDLLALPLMLEATRVIVDEGS
                     REKAKRYFVRVAFLIGASVTLKLSNAAVAAPLVAVCVWRALSQRPLRIKELTTDALGS
                     VAVVVTPLIPFTVWLYKLTGSPVFPIYNGLFQSPFYPPFNGWDDRWGGYGAFEILAWP
                     VLMFFHPHRIAELGVYSGRISVGFVLALLCLLLWSRVDARTRTFAFVIIVGSLLWSLT
                     MGYIRYGLYLEVLSGILMLMLASQLINRTARAPRWRMALAVVICAVMVAQSALASFYV
                     SRQEWSMRPTAFQDFRDFTSESRYLLRDRSIRELLSEQDREMFDGVEVWVVSGAKTAG
                     LMPMLNDRAPFVGVRSLGLFLAAPTREEFARALNRFEGKRMYSLALPQDFEATLSTLR
                     SVGLQAGPITNVEIPLFAPSNVVEFYFFEVTRASPDREPPKTVAIRLRKVLGSTLRKT
                     PVSQCTRAAASPWLSRPTTKRVTSARLSPKCLTMSIML"
     gene            complement(3780..5504)
                     /locus_tag="VHD88_08495"
     CDS             complement(3780..5504)
                     /locus_tag="VHD88_08495"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HVS21872.1"
                     /translation="MTQDTLKRISFIHSPDSFLAETQQYGAMFMPVWAYTLAAYVEEP
                     AAYDLRLFDMRFDDVDDVPAADLFVFSGVNQDYETIVATQARLREHYRDSTFIVGGPI
                     AWSMNQAGEISNLEMFDHVFIGDGEEAFPKFLKAFSVEKALPKIIETKTRFDVTKARG
                     FYRPFLDATFSRYYGGVLEVSRGCPFLCEFCDIRVLPDNNRAHNFSSAHIVAELDHLA
                     RLGIRQVLFAADNFIGDLRWAEALLDEIIEWQERTGLRVALYTWLTINLSRHPRLLQK
                     LRQANFDMLFIGVESFSNNSLLETAKVQNSAGDMIAAIQEVQSYGFAVVAGLIFGFDS
                     DGANAFDLTLEGMAKSGLISGDPSLLTALPGTPLFRRMRLAGRLRNNKNSLGGYKYCT
                     NIRYLMPREVMVRGYQSFVTRFCEGPYQYQRLKGFLDNLDRGNYIPLGSQGYGSLGKY
                     VTMVFKSPHAVKMLFQRLYRLALRPSVAWYAMRGLLLTLSRSRKRRRLFGVFQFWLFN
                     WTNAMLKYEGLSDADFDIDSVPKDFDRALILPEHYIDQADEEIPQVKIAAQQRATVNQ
                     LRRLTVLQ"
     gene            complement(5690..6094)
                     /locus_tag="VHD88_08500"
     CDS             complement(5690..6094)
                     /locus_tag="VHD88_08500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21873.1"
                     /translation="MKSLSIRFAAASFAATLFLASLAGCRHQTSSSSTDETPDTSTYR
                     PESTPATEFEQRLKIVHDGHFSHVWIFTRIDGRAFTPEDSQMLHTSAPKVVDWVGMDD
                     KKKFIAGSNFDIDPAQMAALQKRYKIEDYSGK"
     gene            complement(6124..>7265)
                     /locus_tag="VHD88_08505"
     CDS             complement(6124..>7265)
                     /locus_tag="VHD88_08505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21874.1"
                     /translation="PLAFVFALTYDMFVLLALAVVIWTIVIGWTEERFEWRPLVWVAL
                     GSALGLVINPYFPHNLYLFYEHARVKITAGDFTTKVGQEWYPYDTREFVLNCYVALAA
                     MLIGYIAFDGSDRKRSQRPLFFLILSTALMLMTARWKRFAEYFPPFAILFAAFTLEQF
                     WRGRAVFTHLPQDVMADLQPFLDRQEPTATAKEMKQQETWKMIKAGFVAVALGMALFG
                     NVYRTAKDISESNARDYYAKGAAWMRANIPAGQMVFNTDWDDFPRLFYYDPTHVYVSG
                     LDPTYLLDKNAELSKLYVKITVGDEEDPGPLIRDRFGATWVFSDNTKDHDAFYDNATR
                     SGWFDLVYEDGDCRVFHVRDQKGEPLPEDKKNDNDNSGGDEDNSP"
BASE COUNT         1728 a         2026 c         2055 g         1456 t
ORIGIN      
        1 gctcgtgggc atgcggaatt gccctgatct ggtttgtgat tggattcgcc ggttcgttgg
       61 gtatgaattt ctacttccac cgagcccttt atcgattcgt cccgttgttt cgggggatga
      121 gggttgcaac tcgctggtca atgatcggct acctcggttt ggctatgtta ggaggtctgg
      181 cagcgagcgt ccttgcagat cggttgataa gccaacgcaa tcgagggcgg tcggtggtga
      241 tctatggaat cataatcctg gcgctgctct tcgagcagcg cgctgccccg ctggaacttg
      301 tgcaaggtga acctgatccc gacgaggttt cactccgcct gaaggatacg ccgatgcggg
      361 gtggcattgt ggagcttccc gctggagcag aaggcctcgc tgatcacgga tacatgctgc
      421 gagcggcaga tcatgggcgt ccgctcgtga cagcgatttc aagctacgtt ccgcccctta
      481 ctcaagaggt cgaacaactg gctgcgcagc ggcccattcc cgatcgattt ctcgatctcc
      541 ttgaatcgat ccccgtctcc tacctggtga tacacgatgg aaaactatca cctgaaagtc
      601 gcccagatgt ccaacgcttt gttgtccgag ctgtcgctga tcgacgactt tgctacatcg
      661 ggagttacga tcaacgtaat gatctctatg cagttacaaa gactgagccg gaagcaaaaa
      721 gcgaaacacc gctgcctttt actttcagcg atggacgagt gggcccccac taatcgaaga
      781 ttcctgccgc aattttgaac tttgtgtaga tttaggaaag ccacgctgcc aagtcactgc
      841 cgtcataagc gttgattcat tttccaggcc ctggaaatag cggcccgcaa agactacagg
      901 tagaaagcat cgagaaggtc gccgaactca agcctccgtc ggaaaccgct cgcggtcacc
      961 ttggagtctc ctgaatgtcg agcacgatcg cttccaggat caattgaaag ccgaggatga
     1021 gtggtagcac cgccagcatc accgtgcctg tagtcgcaac gtgatcggtc atgacgctga
     1081 gtatccagtg ataggcgccg aagccgacgc cccacacgca cagcaacaga ccaaggaaaa
     1141 gaaagagtgc aatcggcgag aaatctcgca gcacatattt ttgatagatg cgtcgccaaa
     1201 agcgcggcag gaagagcagc ggaaacttga tggccgcgct gatcggattc aagccagaga
     1261 cctcgtcgcc gtagcgcgcg gggatggcca cgtcaacgac gcgggcgttg tgaaagttga
     1321 gctcgatcag catatcgttc tcaaaaaaat agcgctggtt tatcgaagga aagttcaaca
     1381 gacgaagcgt ctcagccgag atcgctgtgt aaccattttg cggatcgaag atgtgccagt
     1441 aacccgaggc cagcttgtta agaaaggtga gtatgacgtt gccgaataag cgatgacggg
     1501 gcattgacgt tagcgactcg ccggccagga agcggttgcc cttggcgtaa gcataacccc
     1561 gctccacgat cgcatcgagc agcaggtgca catactgggg cggcatctgc ccatcgccat
     1621 ccatcttcac cgcgatgtcg cagccgagtt cgagcgctcg ttcgtagccg agcatcgttg
     1681 cgccgcccac acctaaattc ttcggcgtgc gcaaagctac gacgcgcgcg tcgccgatcg
     1741 attcaatgac tgcgggcgtg tcgtcggtgc tgcaatcgtc cacgactaca acatgatcga
     1801 catagtcagg cacttcggcg acaacctggc cgacgtgacg cgcttcgttg taggccggga
     1861 taaccacggc gatgcggcgg ctcttgtaca ttgcgacacc ggcgttttgc ggagcgtaga
     1921 acctaacact ttgcgcaagc gaatggcaac ggtcttgggt ggctctctgt ctggactggc
     1981 gcgcgtcact tcgaagaaat aaaactcaac cacgtttgag ggtgcgaaga gcggaatctc
     2041 aacgttcgta attggcccgg cttgcaggcc gacgctgcga agagtcgata gcgttgcttc
     2101 aaaatcctgc gggagggcga gcgaatacat gcgtttgcct tcgaaacgat tgagagcccg
     2161 cgcgaactcc tcgcgtgttg gcgcggcgag aaagagtccc agcgaacgga cgccgacaaa
     2221 aggcgcgcga tcgttcagca tcggcatcag tcccgccgtc ttcgcgccgc tgacgaccca
     2281 cacttcgacg ccgtcgaaca tttcacgatc ttgttcggaa agcaattctc tgatcgaacg
     2341 atcgcggaga agatatctcg actcgctcgt gaagtcgcgg aagtcctgga aagcggttgg
     2401 acgcatgctc cactcttggc gcgaaacgta aaaagaagcg agcgccgact gcgcgaccat
     2461 cactgcgcat atcacgacgg cgagagccat tcgccaacgc ggagcccgcg cggttcggtt
     2521 tatcaattgc gacgctaaca tcagcattag gatgcctgac agcacctcga gataaaggcc
     2581 gtagcgtatg tatcccatcg tgaggctcca caagagcgat ccgacaatga tgacgaacgc
     2641 gaacgtgcgc gtgcgcgcgt caacgcgact ccacaacagc agacacagta atgccaacac
     2701 gaagccaacc gaaattctgc cggagtaaac gccgagttcg gcgatgcggt gggggtgaaa
     2761 gaacatcagc accggccatg cgagaatttc aaacgcgcca taaccgcccc aacgatcatc
     2821 ccagccgttg aatggcggat agaagggcga ctggaataat ccgttgtaaa ttggaaagac
     2881 gggactaccc gttagcttgt acagccaaac cgtgaaagga atgagcggcg tgacgaccac
     2941 cgcgaccgag ccgagcgcgt cggttgtcag ttctttgatt cgcagcggtc gctgcgaaag
     3001 cgcacgccag acacacacgg cgacaagtgg cgcggccact gccgcgttcg acaatttcag
     3061 cgtaacgctc gcgccgatta gaaacgccac gcgcacaaag tagcgtttgg ctttttctcg
     3121 cgaaccctcg tccacaatta cgcgcgttgc ttccaacatc aatggcaacg cgagcaaatc
     3181 aaccatgtag ttgttgatct caaacagcat gtgctcggcg cagagtacga gcaacacgcc
     3241 agccgcgcgc agccactgtc ggcggatgtg agggcgcagc aatttatcga tgacggtgcc
     3301 cgcccaaacg agcacgaggt agttaatgag tgtaccgaga cgatagccca gcagattccg
     3361 aaagattccg gtgagcatgt ccggcgcggg attgaacggc gccgcagttg ggaaaaattc
     3421 gccggggtga tagagaaagc cgcgcagtgc gcgctcaccg tgaaagagtc gcaggctcca
     3481 cacgtcgaag gaaacgtcgg ggaacggtgc gcgcagcgcg taaacgaaca tcagcggtag
     3541 cgcgacaatc aaccagaatg gcagcgacaa gcgttcggtc gccggctctt ttgtcgagat
     3601 gtagaagtac caaccgataa gcgctagcgg aatggtcaga caccacgccg cgaagttctc
     3661 cagtccccaa aaccatggac ggatcaggac gatgaagtaa aagacgagca acgcatcgcc
     3721 aaattcggcg cgcaataaca ggtcgcgtgt cttgcccgcc aaagttgatc gcatctgctc
     3781 tattgcagga ctgtcaaacg gcgcagttgg ttgacggtgg ctctttgttg tgcggcgatc
     3841 ttcacctggg gaatctcttc gtccgcctga tcgatgtagt gctctggcag aatgagagcg
     3901 cggtcaaaat ccttcggcac tgaatcaata tcaaagtcgg cgtccgagag tccttcatac
     3961 ttcaacattg cattcgtcca attgaagagc cagaactgaa agacgccgaa caatcgccga
     4021 cgtttccgtg agcgcgacag tgtaagcagc agaccgcgca tcgcatacca cgcgaccgat
     4081 ggccgcaggg cgagtcggta cagacgctgg aagagcatct tgacggcgtg cggactcttg
     4141 aaaaccatcg tcacatattt gccgagactg ccatagcctt gcgaacccag cggaatgtag
     4201 ttgccacgat ccagattgtc gagaaaacct ttcagccgct ggtactgata agggccttcg
     4261 caaaagcgcg tgacgaacga ctggtagccg cgaaccatca cctcgcgcgg catcagatag
     4321 cgaatgttcg tgcagtattt gtagccgccg agcgagttct tgttgttgcg gagccgcccc
     4381 gcaagcctca tccggcgaaa gagcggcgtg cccggcagcg cggtcagcag agaagggtcg
     4441 ccagagatca atcccgactt cgccatccct tcgagcgtca gatcgaaagc attcgcgccg
     4501 tcagagtcaa agccaaagat aagacccgcg accaccgcga agccgtaaga ttgcacttct
     4561 tgaatcgcag cgatcatgtc gcccgcgctg ttctggactt tggcggtttc gagcaaagag
     4621 ttattgctga agctctcgac accgatgaag agcatgtcaa agttcgcctg tcgaagtttc
     4681 tgcaacaggc gcggatgccg cgaaagattg atcgtcagcc aggtgtaaag cgcgacgcgc
     4741 aaacccgtcc gctcttgcca ctcgatgatc tcgtcaagca gcgcctcggc ccagcgcaga
     4801 tcgccaatga agttgtcggc ggcgaagagc acctggcgaa tgccgagccg tgctaaatga
     4861 tccagctcag caacgatgtg cgcggacgaa aagttgtgtg cgcggttgtt gtccggcagg
     4921 acgcgtatgt cgcagaactc gcacaagaac ggacagccgc gcgaaacttc gaggacgccg
     4981 ccgtagtagc gactgaaagt tgcgtccagg aatgggcgat aaaacccgcg cgctttcgtc
     5041 acgtcgaaac gggttttcgt ttcgataatt ttgggcagcg ccttttcaac ggagaacgct
     5101 ttcagaaact tcggaaacgc ttcctcaccg tcaccgatga agacgtggtc gaacatctcg
     5161 aggtttgaga tttcgccggc ttgattcatc gaccacgcga tcggcccgcc gacgatgaat
     5221 gtggaatcac ggtagtgctc gcgcagacgc gcctgcgtcg cgacgatcgt ttcgtaatcc
     5281 tgattgacgc cgctgaagac aaacagatca gccgcgggca cgtcgtccac atcatcgaag
     5341 cgcatatcga acagacgcag atcgtaggcc gcgggttctt cgacataagc cgccagcgtg
     5401 taggcccaaa ccggcatgaa catcgcgcca tactgctgcg tctccgccag aaacgagtcc
     5461 ggcgaatgga tgaacgagat tcgcttgagt gtatcctgag tcatgactcc gtaacgcgca
     5521 gccgttcagg gcttgacccg atagggcgga gactgtgcgg attagcgaga cgaattctaa
     5581 cacaagggct gcccgcccgc ggtgacagct catagggggc cgaagggggc tcggcatttt
     5641 gttgacctaa cgaaagcctt gaccggtaat accgggattg tattgatgtt tacttccccg
     5701 aataatcctc aatcttatat cgcttctgga gcgcggccat ctgagccggg tcaatatcga
     5761 agttcgatcc ggcaatgaat tttttcttat cgtccatgcc cacccaatcg acaactttcg
     5821 gagcgctcgt gtgcagcatc tgactgtcct cgggagtaaa cgcgcgaccg tcgatgcgcg
     5881 taaagatcca aacatgagag aaatggccgt cgtgaactat cttgagtctc tgctcgaatt
     5941 cggtcgccgg agttgattca ggccgatagg ttgaagtgtc gggcgtttcg tctgtggaag
     6001 atgatgaagt ctggtgtctg cagccggcaa gggaggcgag aaagagtgtg gccgcgaagc
     6061 tcgcagcagc aaatcgaatg gaaaggcttt tcatgtcgtg agtctccaaa ctatgaaggt
     6121 aatctacggc gagttgtctt catcaccgcc gctgttgtca ttgtcgttct tcttgtcttc
     6181 cggcagaggc tcgcctttct gatcgcgtac gtgaaacact ctgcaatcgc catcttcgta
     6241 aactagatcg aaccaaccgc tgcgcgttgc attgtcatag aaggcgtcgt ggtccttcgt
     6301 attatcgctg aaaacccagg tcgcgccgaa gcgatcgcga atcaatggtc cgggatcttc
     6361 ctcgtcgccg accgtgatct tgacgtaaag cttcgacaac tccgcattct tgtccagcaa
     6421 gtaagtcgga tcaagtcccg acacataaac gtgcgtcgga tcgtaataga acaaacgcgg
     6481 aaaatcgtcc cagtccgtgt tgaaaaccat ttggccggcg ggaatgttcg cgcgcatcca
     6541 cgccgcgcct ttggcgtagt agtcgcgcgc gttgctttcg ctaatgtcct tcgccgtgcg
     6601 gtaaacgttg ccgaacagag ccatgccgag cgccacggcg acaaagccgg ccttaatcat
     6661 tttccaggtt tcctgctgct tcatctcctt cgcggtcgcg gtcggctcct gtcgatcgag
     6721 aaatggctgc aagtctgcca tcacgtcttg cggcaaatgc gtgaacaccg ctcgtccgcg
     6781 ccagaattgc tccagcgtga acgccgcaaa cagaatcgcg aacggcggaa agtattccgc
     6841 aaagcgtttc cagcgcgcgg tcatcaacat caacgccgtg gacaagatga gaaagaacaa
     6901 cggccgctgc gatcgcttgc gatcgctgcc gtcgaatgcg atgtagccaa tcagcatcgc
     6961 ggccagcgct acataacagt taaggacgaa ctcgcgggtg tcgtatggat accattcctg
     7021 gccgaccttc gtcgtgaaat cgccggccgt gatcttcacg cgcgcatgtt cgtaaaacag
     7081 atacaggttg tgcggaaagt agggattgat caccagaccc agcgccgaac caagcgcaac
     7141 ccagacgagc ggacgccatt caaaacgctc ttcagtccag ccaataacga tcgtccaaat
     7201 gacgacggcc agcgccagga gcacgaacat gtcgtaggtc aacgcaaata caaaagccaa
     7261 aggca
//
LOCUS       DASZZE010000442         5205 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_257882, whole genome shotgun sequence.
ACCESSION   DASZZE010000442 DASZZE010000000
VERSION     DASZZE010000442.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5205)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5205)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5205
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_257882"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            192..1214
                     /locus_tag="VHD88_08510"
     CDS             192..1214
                     /locus_tag="VHD88_08510"
                     /inference="COORDINATES: protein motif:HMM:NF025690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4388 domain-containing protein"
                     /protein_id="HVS21875.1"
                     /translation="MPLTGELSDLSLAELIEFFCNQRKTGRLKVIYSNGPGYFYLQSG
                     AVVHARIGELRGIEAVYYALTLPNASFTFSPAFEPPEHTINQPWTSVVLEGLRRMDEG
                     IQPANPFLDHDQLADEESKPIAEAPVAAASHKSEDLLSEILSPHEVKEMEAFLSQPEN
                     GSYWLRKPWTLGAVVAAVVLIVAVIGVPWGWYAHSRAAKAATQAQTLLAQNSETANQS
                     VVTKQPDTAPAASETSQPLASSDAADLAAKRQREERAKERAKAQEAAKSLTKDTLLAA
                     NTNTPKSQSSPTSGAKKVTVQVTYDENGRVTQASGADATALRIARQKRFPPGKAGSAT
                     ITIPIN"
     gene            complement(1260..2474)
                     /locus_tag="VHD88_08515"
     CDS             complement(1260..2474)
                     /locus_tag="VHD88_08515"
                     /inference="COORDINATES: protein motif:HMM:NF012885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LeuA family protein"
                     /protein_id="HVS21876.1"
                     /translation="MSVAELIYDWNKVDPTLSKPDRHIGFDDETLRDGLQSPSVCEPP
                     VEQKIELLHLMEALGIDTADIGLPGAGGTHAASVEVMAREIADKKLKIRPNCAARTHR
                     NDIIPIVEISQRAGIPIEACTFIGSSPIRFYAEEWTLDKLLQMTEEAVTFAVKEGLPV
                     MFVTEDTTRADPETIRALYTTAIRCGARAVCVCDTVGHATPDGAREVVKFVRGIIDEQ
                     GEKVRLDWHGHQDRGLGVINSIAAIEGGADQVHGSALGMGERVGNTPMDQLLVNLKLL
                     GWIENDLTRLREYCDKAAEACHWTIPLNYPVFGRDAFRTATGVHASAVIKSYKKGDTE
                     LADLIYSGVPAGQFGLKQVIEIGPMSGKSNVIFWLESRGLEANEDRVTRIYEHAKQAS
                     AVLSEEEVRALV"
     gene            2582..3199
                     /locus_tag="VHD88_08520"
     CDS             2582..3199
                     /locus_tag="VHD88_08520"
                     /inference="COORDINATES: protein motif:HMM:NF014041.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inosine/xanthosine triphosphatase"
                     /protein_id="HVS21877.1"
                     /translation="MDVNSTVFERGLVLTRIERIALGSDRAAKIMAVRAAIARIAEID
                     SGWRDAGVVARSVKTNAPAMPLTDWELMSGARERALAVRDILIEQKLETDLYVGLEGG
                     FHSISVEGEWHTFLRGWAYVTDGERDSFGMSPSISVPDAIVKDVIQGKRELGIVIDEV
                     AGARDVRSRQGAWGVLSRDLLTRSMSFEAALIAAFAPFYNSELYS"
     gene            3386..5071
                     /locus_tag="VHD88_08525"
     CDS             3386..5071
                     /locus_tag="VHD88_08525"
                     /EC_number="6.3.5.1"
                     /inference="COORDINATES: protein motif:HMM:NF010588.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003952 - NAD+ synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HVS21878.1"
                     /translation="MRVTIGQINTTNGDCEGNVARILSAIEQAKKDRSDLIVFPEVTI
                     QGYTSLDWFLDPDVIRSALDPLNKIIEATDGLTAIVGTVRPSDQATGRKLYNSAAVIR
                     DRTLLGFADKTLLPEYDVFDDPRYFEPARERRLFNIDETKLGIAVCEDFWNDKTFWKQ
                     RLYANDPADELIQMGANLLVSINASPFNKGKMGRRCEMVSHRAKTAGLPIVFVNLIGG
                     NDGVIFDGSSIVADAHGKIILQAPPFEEFIGTVDLDSDVADTRCLPGDDIETVRQALV
                     LGIRDYARKNGFAGALFGLSGGIDSAVVAALACEALAPANVLAVMMPSPYSSPGSIED
                     SIELGRRLGVEIIDRPITEAYQSLRNELGLSEPKAGSNSHAVENLQSRLRGNILMTIS
                     NAEGRLLLSTGNKSELALGYCTLYGDTNGGLAVIGDVLKTEVYELARLYNRERELIPQ
                     SIIDKRPSAELAPEQFDDQSLPPYDKLDPILELYFEQKASPEEIIAAGHDPQMVYDIL
                     NRVESPANEFKRRQLPPTLIISRNAIGIGRRRPVTHRYKRTRVQREGSASGAI"
BASE COUNT         1143 a         1440 c         1464 g         1158 t
ORIGIN      
        1 gacgtggctg tacaagcggc ctatcgcgcg cgtttcaccc cgacaaaact ttcagggcag
       61 cccgtgaaga tttcgggcca aatcaattac aacttcacac tgccttagta tcccgctctg
      121 acgtggctct cctggctccg agtatcggcc gcgtcgttct cgcaaacttt gcaatggaag
      181 aggaatgatg tatgccgctg actggagagc ttagcgacct ttcgctcgct gagttaatcg
      241 agtttttttg taaccagcgc aagaccggcc ggttgaaagt aatctactca aacggcccgg
      301 gctatttcta tttgcaatcc ggcgctgtgg tccatgcgag gattggtgag ttgcgcggaa
      361 ttgaagccgt ctattacgca ttgactctgc cgaacgcgtc gttcactttc agtccggcgt
      421 tcgaaccgcc tgagcacacc atcaatcagc cctggacgtc agtggtgttg gaaggattgc
      481 ggcgcatgga cgaaggcatt cagcccgcga atccttttct cgatcatgat caacttgcgg
      541 acgaagaaag caaacctatc gccgaagccc ctgttgctgc tgccagccac aaatccgaag
      601 atctgctgag cgagattctt tcgcctcatg aggtcaagga gatggaagcg tttctttccc
      661 agccagagaa cggatcgtac tggctaagaa aaccatggac gctgggcgca gtcgtggcgg
      721 ccgttgtgtt gatagttgca gtaatcggag tgccttgggg ttggtacgcg cacagcagag
      781 ccgcaaaggc agcgacccag gcacagacat tgctggcgca aaacagcgag acggcgaatc
      841 aatcagttgt aacgaagcaa cctgataccg cgccggcggc cagtgaaacg agtcagccgt
      901 tagcaagttc cgatgccgct gatctggctg cgaagcgaca gcgtgaagag cgcgcgaaag
      961 agcgtgcgaa agctcaggaa gccgcgaagt cattgacgaa ggataccttg ctcgcggcta
     1021 atacaaacac tccgaagagc caatcatcgc cgacatccgg agcgaagaag gttacggtgc
     1081 aggtaactta tgacgagaat gggcgagtaa ctcaggcctc tggtgccgat gcgacggcat
     1141 tgcgtatcgc gcgccagaaa cgttttcctc cgggcaaagc tggttcggcg acgattacca
     1201 ttccgatcaa ctaagcgagg tcagtaccac ctgcgtgagc gggtgggtca atcaattctt
     1261 cacaccaaag ctctcacttc ttcttcactc aacactgccg aggcctgctt agcgtgctcg
     1321 tagatgcgcg taacgcgatc ttcattagct tcgaggccgc gactctccag ccagaagatc
     1381 acgtttgatt tgccgctcat cgggccgatc tcgattactt gtttgaggcc gaactgtccc
     1441 gctgggaccc cggagtaaat cagatcggcg agttcagtgt cgcctttctt gtagctctta
     1501 atcaccgcgg aggcgtgcac tcccgttgcc gtgcgaaatg cgtcgcggcc aaagaccgga
     1561 tagtttagcg ggatagtcca gtgacaagct tcagcggctt tgtcgcaata ctcgcgcaag
     1621 cgagtcagat cgttttcaat ccatcctaac aatttcagat tcacgagcaa ctgatccatc
     1681 ggtgtgttgc cgacgcgctc gcccatgccg agcgccgaac cgtggacttg atccgcgccg
     1741 ccttcgatcg ccgcaattga attgatcacg cccaggccgc gatcctgatg gccgtgccaa
     1801 tcaagcctta ctttctcgcc ctgctcgtcg attattccgc gcacaaactt cacgacttct
     1861 cgcgcgccgt caggcgttgc gtggccgacc gtgtcgcaaa cgcagaccgc gcgtgcgcca
     1921 cagcgaattg cggtcgtgta gagagcgcga attgtttcag gatcggcgcg cgtcgtgtcc
     1981 tcagtcacaa acatgactgg caaaccttct ttcactgcga acgtcacggc ttcttcagtc
     2041 atctgtaaaa gcttgtcgag cgtccactcc tctgcataga agcgaattgg cgaagagcca
     2101 atgaaggtac acgcttcgat gggaatgccg gcgcgctgcg agatttccac aatgggaatg
     2161 atgtcgtttc ggtgcgtgcg cgcggcgcag ttgggccgaa tcttcagttt cttatccgcg
     2221 atttcgcggg ccatcacttc gacgctggcg gcgtgcgtgc cgcccgcgcc gggcaggcca
     2281 atatcagccg tgtcaatgcc gagcgcttcc atcaaatgca gcaactcaat cttctgctcg
     2341 actggcggct cgcataccga aggcgactgc aagccgtcgc gcaacgtctc gtcgtcaaat
     2401 ccgatatgac gatcaggttt gcttaacgtc ggatcgacct tgttccaatc gtaaatcaat
     2461 tcagcaacgg acaagattgc acctccgcga actgtttaga gttcaaactt tagtttgtgt
     2521 tctgaaactg caagctgaag cttgtactct taacaggatt cgattacaac aacggcaagg
     2581 cttggatgtc aactcgactg ttttcgaaag aggactcgta ctgactcgca tcgaacgaat
     2641 cgcgctgggc tctgatcgcg ccgcgaaaat catggctgtg cgcgcagcga tcgcgcgcat
     2701 cgcagagatc gattccggct ggcgcgatgc gggcgtcgtc gcgagatcag tgaagacgaa
     2761 cgcgccggca atgccgctaa cggattggga gttgatgagc ggcgcgcgcg aacgcgcgct
     2821 cgcggtgcgc gacattctga ttgaacagaa actcgagact gatctttacg tcgggctcga
     2881 gggcggcttt cattcgatct cagttgaagg cgagtggcac acgttcctgc gcggctgggc
     2941 ctacgtgacc gacggcgagc gcgacagctt tggcatgtcg ccttcgatca gcgttcctga
     3001 cgcgatcgtc aaggacgtta ttcagggcaa gcgtgaactt ggaatcgtga ttgacgaagt
     3061 tgccggcgcg cgtgacgtga gaagccgaca aggcgcgtgg ggcgtgctct cgcgcgatct
     3121 gctgacccgc tcgatgagtt tcgaagcagc gctgattgcc gcgtttgcgc cgttttataa
     3181 ctcggagttg tactcctaag cttgcattcc ctctccctct gggagagggt cggggagagg
     3241 gtttgacagc gctttcagct acggccctct tccccaacct tctcccaacg ggagaaggga
     3301 gaaagaacaa ccagacatta agacccgatt caaaagttgc ccccgctcag cgactcatcc
     3361 ttatcaatgc taaaatcatt ctcacatgcg ggtcaccatc gggcagatca ataccaccaa
     3421 cggcgattgc gaaggcaacg ttgcgcgtat cctcagcgca atcgaacagg caaagaaaga
     3481 tcgatccgac ttaatcgttt ttcccgaagt cacaattcaa ggctacacgt cgcttgactg
     3541 gtttctcgat cccgatgtca ttcgatcggc tctggatccg ctcaacaaga tcatcgaagc
     3601 gactgatggt ctgacggcga tcgtcggcac ggtgcggccc agcgatcagg cgacgggccg
     3661 caagctttac aactctgctg ccgtcattcg tgataggacc ttgctcggct ttgccgacaa
     3721 gacgcttttg ccggaatacg acgtgttcga cgacccgcgt tacttcgaac ccgcgcgtga
     3781 acgccggttg ttcaatatcg acgaaaccaa actcggcatt gctgtctgtg aagatttctg
     3841 gaacgacaag acgttttgga agcaacgtct ttacgcaaac gatccggccg acgagttaat
     3901 tcagatgggc gcgaacctgc tggtgtcgat caacgcgtcg cctttcaaca agggcaagat
     3961 gggcaggcgg tgcgagatgg tttcgcatcg ggccaaaacc gcgggcttgc cgatcgtttt
     4021 tgtaaacttg atcggtggaa acgatggcgt gatctttgac ggctcgagca tcgtcgctga
     4081 cgctcacgga aaaatcattc tccaggcccc accgtttgaa gaattcattg gcacggttga
     4141 tctcgatagc gatgtcgcgg acacgcgttg tttacccggc gacgatatcg agacggtgcg
     4201 ccaggcgctg gtgctcggca ttcgcgacta cgcgcgcaag aacggattcg ccggggcctt
     4261 gtttggtttg tctggtggca ttgattcggc cgtggtggcg gcgctggcgt gcgaagcttt
     4321 ggcaccggcg aacgtgctgg cggtgatgat gccttcgcct tactcttcac ccggcagcat
     4381 cgaagactca attgagttgg gacgccgatt aggcgttgag ataattgatc ggccaatcac
     4441 tgaggcgtat caatcgttgc gaaacgaact cggcttgtct gagccaaagg ccggaagcaa
     4501 ctctcatgcg gtcgagaatc tgcaatcgcg tctgcgcggc aacatcctga tgacgatctc
     4561 gaatgccgag gggcggttgc tgctttcgac gggaaacaaa tcggaactgg cgctgggcta
     4621 ttgcacgctt tacggcgaca cgaatggcgg actcgcggtt atcggcgacg ttttgaaaac
     4681 cgaagtttac gaactggcgc gactctacaa tcgcgagcgc gagttgattc cgcagtcgat
     4741 tatcgataag cgtccgtcgg cggaacttgc gccggaacag ttcgacgatc agtctctgcc
     4801 cccctatgac aaactcgatc cgatcctcga actttatttc gagcagaaag cttcaccgga
     4861 agagatcatt gccgccggcc acgatcctca aatggtttac gacattctga atcgcgtcga
     4921 gtcacccgcg aacgaattca agcgccgcca actgccgccg accttgatta tttcgcgcaa
     4981 cgcgattggc attggcagac ggcggccagt gacgcaccgc tacaaacgaa cgcgagtcca
     5041 gcgcgaggga tcggcaagcg gagcaatcta gcaggctgct gaaaaattga gcgttgatag
     5101 agcattcgtc ttcatttatc agttctggtt atcagtgatg agtgattttc tttctgccgt
     5161 tgatcccttg agtggctcat ttgccacttt ggatcgcttg tctaa
//
LOCUS       DASZZE010000443         3494 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_306254, whole genome shotgun sequence.
ACCESSION   DASZZE010000443 DASZZE010000000
VERSION     DASZZE010000443.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3494)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3494)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3494
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_306254"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            289..1032
                     /locus_tag="VHD88_08530"
     CDS             289..1032
                     /locus_tag="VHD88_08530"
                     /EC_number="2.3.1.286"
                     /inference="COORDINATES: protein motif:HMM:NF001753.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0017136 - NAD-dependent histone
                     deacetylase activity [Evidence IEA];
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacylase"
                     /protein_id="HVS21879.1"
                     /translation="MQAIAKHLISEKLRRRFQEASNVLVLTGAGVSAESGVPTFRGGG
                     NTAVWKGMPFEVISSAGMLERDLPAVWEWFNYRRGLLEALKPNPAHEAIARWQDRFRD
                     FALVTQNIDGLHQAASSRDLIDLHGSIWRACCVHCLARHNLRELRIDNGVPVCLACAS
                     PLRPDVVLFGEMLPVGAFEQAAGKAELCDLCFVVGTSAVVYPAASIPEIARAAGAYVV
                     EVNPERTPLSELCDEVLTGNAGEILPLLL"
     gene            1066..1722
                     /gene="folE"
                     /locus_tag="VHD88_08535"
     CDS             1066..1722
                     /gene="folE"
                     /locus_tag="VHD88_08535"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: protein motif:HMM:NF006826.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003934 - GTP cyclohydrolase I activity
                     [Evidence IEA];
                     GO_process: GO:0042559 - pteridine-containing compound
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HVS21880.1"
                     /translation="MVKLRGKKIVMSAKLTSIDGERKGRAKGSKPVDLERIASGVRLI
                     LEGIGEDPEREGLQETPRRVAEMYAELTAGMREDPSEHIVPLSGNKHDEMVIVKDISI
                     ASLCEHHLAPFVGKCHIAYIPKDGKIVGVSKLARLAETFARRLQLQERLTSEIANTLF
                     ELLQPLGVMVVVEAEHTCMTLRGVKKSGAMTVTSAVLGGFRKDPRTRAEAMALITGRD
                     "
     gene            1802..2098
                     /locus_tag="VHD88_08540"
     CDS             1802..2098
                     /locus_tag="VHD88_08540"
                     /inference="COORDINATES: protein motif:HMM:NF016167.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF433 domain-containing protein"
                     /protein_id="HVS21881.1"
                     /translation="MNELTTNPADETSTLTTYYYITQQKGVRGGNPIIAHTRIGVHDV
                     IGLLQNGETVDTIVSNYFPDLTRAQVYECLAYYEDHRGEIDVLVARQMSDEQTP"
     gene            2138..2416
                     /locus_tag="VHD88_08545"
     CDS             2138..2416
                     /locus_tag="VHD88_08545"
                     /inference="COORDINATES: protein motif:HMM:NF037832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5615 family PIN-like protein"
                     /protein_id="HVS21882.1"
                     /translation="MASTRWGTRFVKLRELIRPEIADEDVLRLAAEHDCVLITCNRDD
                     FLEAAQRIPHVGLIVLIRRRSRAHERAALVGLLDKAGDAGIRNNINFA"
     gene            2448..>3494
                     /locus_tag="VHD88_08550"
     CDS             2448..>3494
                     /locus_tag="VHD88_08550"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HVS21883.1"
                     /translation="MRITVTGLLIGVLAIIGMAQRARTTPSSISESALRAHVKFLSDD
                     LLEGRGTGARGGEIAARYVAEQFDLLGLKGAGAKGSFWQPVSLVGVKADPKTELRING
                     PEKAEAFKFADDFVAFTGTQTEHVSVNTDLIFVGYGIDAPEQKWNDYKGPAEDYRGKI
                     LVMLVNDPPATTAEPDLFGGRRLTYYGRWTYKFEEAARRGAVGALLLHTNESAGYPWS
                     VVRTSNGSWRFDIARGVGDKTPFLKVRSWMTDDAAHRMMQLAGLNLDDLRKQAASRDF
                     KPVKLNLKASLDLNSEVKRVEAPNVVAILRGRDPKLRDEYVVFSAHWDHLGVGAPDKK
                     GDTIYNGAVDNASGV"
BASE COUNT          754 a          909 c         1077 g          754 t
ORIGIN      
        1 ggccgcacga ataccggccc taagtttgtt ttgaagttcg attaggctca ctggtcgttt
       61 cctgaaaaac cccctctccc cttgggagag ggctggggtg agggagttac ggttcgcgcc
      121 gcactaacgc cctctcccta accctctccc aacgggagag ggaacaaagg ccgcccagtc
      181 gtagatgacc aaaccattcg ctcgagcaat cgcctattgt attgaattga acgcgaatcg
      241 tgaaattgcg acttcgccgc gggctttgct accatccgca tctggagtat gcaagcgatt
      301 gcaaagcatt tgatttccga aaaactccgc cggcgttttc aggaagcgag caacgtcctg
      361 gtgctaaccg gcgccggcgt ttctgccgag tccggcgtgc cgacgtttcg cggcggcggc
      421 aacacggcgg tgtggaaagg catgccgttc gaggtgattt cttcggcggg aatgctcgaa
      481 cgcgatctgc cggcggtttg ggagtggttc aattatcgtc gcggcctgct ggaagcgttg
      541 aaaccgaatc cggcgcacga ggcgattgcg cgttggcagg atcgattcag agacttcgcg
      601 ctggtgacgc agaacatcga cggcctgcac caggcggcaa gttctcgtga cttgatcgat
      661 ctgcacggca gtatctggcg cgcgtgttgt gttcattgct tggcgcgaca caatctgcgc
      721 gaattgagaa tcgataacgg agtcccggtg tgtctcgctt gcgcgagtcc actgcgtccc
      781 gacgtcgtgc tcttcggcga gatgttaccc gtgggcgcgt tcgaacaagc cgcaggcaaa
      841 gctgaattgt gcgacctttg tttcgtcgtc ggaacttccg cggtcgttta tccggcggct
      901 tcgattcccg agatcgcgcg cgcggcggga gcgtacgtcg tcgaagtgaa tcctgagcgc
      961 acgccgcttt ctgagctttg cgacgaagtg ttaaccggaa acgcgggaga gattttgccg
     1021 ctccttctgt aatcatcaaa cggcgcacgc aatttcggca cattgatggt aaagttacgc
     1081 ggaaagaaga tcgtaatgag tgcaaagttg acttcaatag acggagaacg caaaggacga
     1141 gcgaaaggat cgaagcccgt tgatcttgaa cgcatcgctt ctggcgtgcg gctgatcctg
     1201 gagggaatcg gcgaagatcc cgaacgcgaa ggactgcaag agacgccgcg tcgggtcgcc
     1261 gagatgtacg ctgaactgac tgccggaatg cgcgaagatc cgagcgagca catcgtgcct
     1321 ctctccggca acaagcacga tgagatggtg attgtgaaag acatcagcat tgcgtctttg
     1381 tgcgagcatc acttggcgcc gttcgtgggc aagtgtcaca tcgcttacat tccgaaagat
     1441 gggaagattg tcggggtgtc gaagttggcg cgtttggccg aaacatttgc gcggcgattg
     1501 cagttgcagg agcgtttgac ttcggaaatc gcgaatactc tgttcgagtt gttgcagccg
     1561 ctcggagtga tggtcgttgt cgaagccgag cacacttgca tgactttgcg tggagttaag
     1621 aagtctggcg cgatgaccgt gacgtccgcg gtgctaggtg gttttcgcaa agacccgcgc
     1681 acgcgggcag aggcgatggc tttgattacg ggccgagatt gagaagcctg agttggtttc
     1741 gatctcttcc aagactaatc tgtggttttg taggcagcga ctaagctaaa cttcagttgt
     1801 tatgaatgag ctaacaacaa atccggcaga cgaaacttcg accctgacta cttattacta
     1861 catcacgcag cagaagggtg ttcggggcgg gaatccgatt atcgcgcaca cgcggatcgg
     1921 ggtgcatgac gtgatcggtc tgttgcagaa tggcgaaacc gttgacacca ttgtgtccaa
     1981 ctattttcca gaccttacac gcgctcaagt gtacgagtgc ttagcctact atgaggacca
     2041 ccggggagaa attgatgtgc ttgtggcccg tcagatgagc gacgagcaga ccccgtgaag
     2101 ttccttttcg accaggatgt accggatgac atggcatttg gcctcaacgc gttggggcac
     2161 gaggttcgtc aaactgcggg agttgattcg tcccgagata gcagatgaag atgtgctgcg
     2221 tttagctgcc gaacacgact gcgtgctgat tacctgcaac cgagacgatt tcttagaggc
     2281 cgcgcagcga attccacacg tcggtctcat cgtgttgatt cggcgtcgct cgcgcgctca
     2341 tgaacgcgct gcactggttg gcttgttgga taaggcgggt gatgcaggca tccgcaacaa
     2401 tattaatttt gcgtaagtgt gaaccaggaa ccacggagaa catgcgtatg agaataacgg
     2461 ttacaggatt gctaatcggc gtactcgcga ttattggcat ggcacagcgg gcgcgaacta
     2521 cacccagttc gatcagcgaa agcgccctgc gcgcacacgt caagtttctt tccgatgatt
     2581 tgctggaagg ccgcggcacc ggcgcccgcg gcggcgagat tgcggcgcgc tacgttgctg
     2641 agcagtttga cttgctgggc ttgaaaggcg caggcgcgaa aggaagtttc tggcagccgg
     2701 tttcgctcgt cggcgtgaaa gccgatccca aaactgagtt gcgcatcaac gggccagaaa
     2761 aagccgaagc attcaagttc gcggacgatt tcgtcgcgtt caccggcacg cagactgagc
     2821 atgtttccgt taacactgac ctcatcttcg ttggatacgg catagacgcg ccggagcaga
     2881 agtggaacga ctacaagggc ccggccgagg attatcgcgg caagattctg gtgatgctgg
     2941 tcaacgatcc gccggcaacg acggcagagc cggacctctt cggcggccgc cggctcactt
     3001 actatggtcg ctggacgtac aaattcgaag aagccgcgcg acgtggcgcg gtgggcgcgc
     3061 tgctgctgca cacgaacgag tcggcgggct atccgtggag cgtcgtgcgc acttcgaatg
     3121 gctcgtggcg gttcgacatc gcgcgcggcg tcggcgacaa gacacctttc ctgaaagttc
     3181 gatcgtggat gaccgatgac gcggcgcatc gcatgatgca acttgccgga ctgaaccttg
     3241 acgacctgcg aaagcaggca gcatcaagag atttcaaacc agtgaagttg aacctgaagg
     3301 cttcgcttga tttgaacagc gaagtgaagc gcgtcgaagc gccgaatgtc gtcgcaattc
     3361 ttcgcgggcg cgatccgaaa ctgcgggacg agtacgttgt cttttccgct cactgggatc
     3421 atctgggcgt cggcgcgccc gataagaaag gcgacacgat ctacaacggc gcggttgata
     3481 acgcgtccgg cgtc
//
LOCUS       DASZZE010000444         7026 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_224852, whole genome shotgun sequence.
ACCESSION   DASZZE010000444 DASZZE010000000
VERSION     DASZZE010000444.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7026)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7026)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7026
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224852"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..355)
                     /locus_tag="VHD88_08555"
     CDS             complement(<1..355)
                     /locus_tag="VHD88_08555"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HVS21884.1"
                     /translation="MSRTISSAVTSSDDVTTNLTERLRARIRGDGPISFRDWMQAALC
                     DSREGYYCRSDPARWGRTGDYRTAPETSPLFAATFARYFAKLFAELGSPESWTIIEVG
                     AGAGDFARGVLSSLQS"
     gene            complement(390..950)
                     /locus_tag="VHD88_08560"
     CDS             complement(390..950)
                     /locus_tag="VHD88_08560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HVS21885.1"
                     /translation="MFCPRCGQQQATDSMRFCSRCGFPMEGAMHLLANGGMLPHYQPV
                     AGENEISPRRKGVKQGVLLMLIGAVLVPMLGVLVSFAPQRLDVMFEFFTALTAILCFV
                     GGPLRMLYAAIFEEGAPTRQFAAASSYSPLAIPQSPARVSALPPASVNPASSWRPQPQ
                     TAEILQPPSVTDHTTRLLEKSGPEAD"
     gene            complement(996..1457)
                     /locus_tag="VHD88_08565"
     CDS             complement(996..1457)
                     /locus_tag="VHD88_08565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21886.1"
                     /translation="MSQLISGLDEQFALIHRRSCELIDEIPPALLYRKTPVSNSSSGH
                     SCGEQILRSAAIVEQTFGGITANLWDDAFEWTLPENLATCEKVRQYLDEVEATRRRGF
                     ELFHSDDDLMKEIMAPTGKTQLLTLLMDTIARAVHHQGNARITFEMMRPKN"
     gene            complement(1470..1823)
                     /locus_tag="VHD88_08570"
     CDS             complement(1470..1823)
                     /locus_tag="VHD88_08570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21887.1"
                     /translation="MHLLGKILFLSAILAGALALTACPSQTTISKINANPAKYRNKEI
                     ALIGTVTDSYGLLGNGIYELDDGTGRVWVMTTQGVPTKGTRVGTSGEVHTGVNYGGKN
                     YGLVLQEEHRRSKSK"
     gene            complement(1949..2749)
                     /locus_tag="VHD88_08575"
     CDS             complement(1949..2749)
                     /locus_tag="VHD88_08575"
                     /inference="COORDINATES: protein motif:HMM:NF024790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M50 family metallopeptidase"
                     /protein_id="HVS21888.1"
                     /translation="MKLRLSHDARPQAMTLLLAAVLSIALWFIPFAEILSYPFRIFVT
                     FIHEGGHAVAALLTGNSVQSLSVAMNASGETYTTRGGVFSRMLVASAGYLGAMTYGAL
                     LLVLIRRAVAARVVLTGSALLILVLTTVFGLLKPMFAGSWGSLTGIPFTLLAGIALAG
                     ALILVARFASARVATFVVSLLAVQCVLNALLDLKNVFFLSSPFATSVPTDALNMRNAT
                     GIPAIIWAIVWIVIAFGILALALRLYVAARERAFDAQKDLPFEQKAEA"
     gene            complement(2852..3343)
                     /gene="moaC"
                     /locus_tag="VHD88_08580"
     CDS             complement(2852..3343)
                     /gene="moaC"
                     /locus_tag="VHD88_08580"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: protein motif:HMM:TIGR00581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HVS21889.1"
                     /translation="MKELTHIDEQGHAKMVDTSEKLITIRRAIASARVLMSSETVTAI
                     RDHQTPKGDPLETARLAGIVAAKRTAELIPLCHPLPLTHIDVRTELQDESVYLEAEVT
                     TRAQTGVEMEALTAVSVAALTIYDMCKAVDKAMTITDLRLELKTGGKSGDYLREKNRE
                     GTS"
     gene            complement(3340..3789)
                     /locus_tag="VHD88_08585"
     CDS             complement(3340..3789)
                     /locus_tag="VHD88_08585"
                     /inference="COORDINATES: protein motif:HMM:TIGR04256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GxxExxY protein"
                     /protein_id="HVS21890.1"
                     /translation="MTDYELTQNVIGCAMKVHSALGPGLLESAYQECLFFELVKAGLF
                     VEKQKPMPFFYSDVKLECGYRVDLMIEQRLILEIKSVEAINDIHLAQVLTYLKLANCR
                     FGLIMNFNVLHLREGIRRVVNRYDDSASSAKTSAASAVNSPSSPARS"
     gene            complement(3852..4652)
                     /locus_tag="VHD88_08590"
     CDS             complement(3852..4652)
                     /locus_tag="VHD88_08590"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HVS21891.1"
                     /translation="MQPTSTSPVVLESGASAAGQAQPLAHQAIHDTVVEVLEKLPRGA
                     LLDVPAGQGALAARLIAAGFDVRCCDLYPEIFRLAGVEIKQGDLSRDLPFDDESFDYV
                     TCLEGLEHIENPQQAMREFARVMRPCGYLIVSVPNILNIEERLKWLVYGYTSHFKPIT
                     CAQAARLRVEYDNREEIAAHVNPIGYSELRYILEKYGFQIASLHCDKPKRHAWLYWPI
                     VALIRLIARLTPATKRAERWTEELASDEVLLGGNTLIVHAVLSKVAKT"
     gene            4839..5654
                     /locus_tag="VHD88_08595"
     CDS             4839..5654
                     /locus_tag="VHD88_08595"
                     /EC_number="1.14.19.2"
                     /inference="COORDINATES: protein motif:HMM:NF014912.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0045300 - acyl-[acyl-carrier-protein]
                     desaturase activity [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP desaturase"
                     /protein_id="HVS21892.1"
                     /translation="MFETDKEVLDWYEQQPRSLTKEFVDSIPWRNVSNYALNSAFVPV
                     LIYMRDVEYFTDIYYRELMRTPTGRDPIIRKFMDRWSVEENQHADLLNRFLNEAGITT
                     HEKWQAEAKAKIPWGYTINAYLLYWAVKPFGKYFHGAHMAWGAINEITTLQAYRRLSE
                     LAGHPVLTHLLTAIMQEESIHSNFYWSIAKLKLSQAKLSRDLARFSIRKFWAPVGQGP
                     KPENDTNYVVSTLFRGPSGLELFNRTVASRIARLPGFNGFTALSERVAPIVQG"
     gene            complement(5784..7001)
                     /gene="glp"
                     /locus_tag="VHD88_08600"
     CDS             complement(5784..7001)
                     /gene="glp"
                     /locus_tag="VHD88_08600"
                     /inference="COORDINATES: protein motif:HMM:NF045515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1990586 - divisome complex [Evidence
                     IEA];
                     GO_function: GO:0061599 - molybdopterin molybdotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gephyrin-like molybdotransferase Glp"
                     /protein_id="HVS21893.1"
                     /translation="MTPVAEAIQVVTAQTPPLEPERIFLADALGRFLAEDIVADSDLP
                     PFDRAQMDGYAVRAADVANTPARLRIVGESAAGSGWHHEMKAGEAVRIMTGAPVPGGA
                     DAVQQVELTREIDGGSQVEILESVEAGRSIVKQAAEIKAGETVLRAGEDINAAMIATL
                     ASFGYAQVKVGRRPRVAVMATGSELVDVDQKPGRDQIRDSNNYTIAAYASTAGATVER
                     LPLAGDDTEELKRQIAAAAERSDVLITSGGVSMGVYDFTKAALKELGAEIFFERVALR
                     PGKPTLFARLGNTLVFGLPGNPVSVAVTLNLFARTALRAMQGAKQPALIEEAAVLARS
                     VKGSIDRESYLPAVLRTDEKGTLLAEPLEWGGSSDFVAFARATALIIIPAGVKSVASN
                     SVARIVRLPNSAP"
BASE COUNT         1585 a         2006 c         1885 g         1550 t
ORIGIN      
        1 gtgattgaag actgctcagg acaccacgcg caaaatcgcc tgcgccggcg cctacttcga
       61 tgattgtcca cgattcagga gaacccaact ccgcgaacaa cttcgcaaag tatcgcgcga
      121 aggtcgctgc aaatagcggg ctggtttcgg gcgccgtgcg atagtcgcct gtcctgcccc
      181 atcgcgcggg atccgatcga cagtagtaac cttcgcgcga atcgcaaagc gccgcctgca
      241 tccaatcgcg aaagctgatc ggtccgtcgc cacggatgcg cgcgcgcaag cgctcagtca
      301 ggttcgtagt tacgtcgtcg ctggatgtca ccgcgctgct gattgtgcgc gacaacctgt
      361 gtttcaggca aagccgcaga caagccagtt caatcggctt cgggccccga cttttcgagc
      421 agacgagttg tgtgatcggt aacgctcggc ggttgcagga tctccgcggt ttggggttgc
      481 ggcctccatg aactcgcggg attaactgac gccggaggca acgccgacac gcgcgcgggt
      541 gactgaggga ttgccagtgg cgagtacgaa gaggccgccg cgaactgacg cgtcggcgcg
      601 ccttcttcga agatggcggc ataaagcatg cgcaatgggc caccgacgaa gcagaggatc
      661 gccgtcagcg ccgtgaagaa ctcaaacatt acatccaaac gctgtggagc aaagctaacc
      721 agtactccga gcattggcac gagtacggca ccaatcagca tcaataagac gccttgcttg
      781 acgcctttgc gacgcggcga gatttcattt tctccggcga ccggctgata gtgcggaagc
      841 attccaccgt tcgccaacag atgcatggcg ccttccatcg ggaaaccgca gcgcgaacag
      901 aagcgcatcg agtcagtcgc ttgttgttgg ccgcatcgtg gacaaaacat agtcgcagtg
      961 gtcagtgatc ggtggtcagt gatcggtggt cagtttcagt tcttcggacg catcatttca
     1021 aatgttattc gggcgttacc ctgatgatgc actgcgcgcg cgattgtgtc catcaagaga
     1081 gtcaacaatt gcgtcttgcc cgttggcgcc atgatttcct tcatcaggtc atcgtcgctg
     1141 tggaaaagtt caaacccgcg ccggcgcgtg gcttcaacct cgtcgagata ctgccggact
     1201 ttttcgcagg tcgcaaggtt ttcaggcagc gtccactcaa acgcatcgtc ccaaagattg
     1261 gccgtgatgc cgccgaaggt ttgttcgaca atcgccgcgc tgcgcagaat ttgctctcca
     1321 caagaatgac ccgatgacga gtttgacacg ggcgtctttc gataaagcag agccggtggt
     1381 atctcatcga tcagctcaca tgatcgccga tgaatcaacg cgaactgctc gtcaagaccg
     1441 gaaatcaatt gactcatttg cccattgatt catttcgact ttgagcgtcg gtgctcttcc
     1501 tgcaaaacca ggccatagtt cttgccgccg taattgacgc cagtatgaac ctcgcccgat
     1561 gtcccgacgc gcgtgccctt cgtcggcact ccttgcgtag tcatcaccca gactcttccg
     1621 gtgccatcgt ctaactcata aatgccgttg cccaacaagc catagctatc ggtgaccgtg
     1681 ccaatcagtg cgatttcttt gtttcgatac ttcgccgggt tcgcgttaat tttcgaaatc
     1741 gttgtttgac tcgggcacgc agtcaacgcc agcgcgcccg caagaatcgc ggagagaaat
     1801 aaaatcttac caagtagatg cattgcgtct cctcttatgt tccgggattt catttcggga
     1861 gagcgcccgc atgatatcac gccgagacct gtgcgactac gcgcttcgac ttaggtaaag
     1921 ctgagaagat tagcctcggc tcttgcgatc aggcttccgc tttctgctca aacggcaaat
     1981 ccttctgcgc atcgaatgct cgctcccgcg cggcgacgta aagccgtaga gccagcgcca
     2041 gaattccaaa ggcgattacg atccaaacga tcgcccagat gattgcggga atgcccgtag
     2101 cgttgcgcat gttcagcgcg tcagtgggaa cgctcgttgc aaacggcgac gaaaggaaga
     2161 acacgttttt caaatcaagc aaagcgttca agacgcattg cactgcgagc aggctgacga
     2221 cgaaggtagc gactcgtgct gaggcaaatc gagcgaccaa tatcaaagcg cctgcgaggg
     2281 cgatgccggc aagcaaagtg aatgggatcc cggtcagcga accccatgag cctgcgaaca
     2341 ttggcttgag caatccgaac accgtcgtca aaaccagaat cagcagcgcc gagcctgtca
     2401 ggacgacgcg cgcggctacc gcgcggcgaa tcagcaccag caaaagcgcg ccgtaagtca
     2461 tcgcgccgag ataacctgca ctggcaacca gcatccgcga gaacacgccg ccccgtgtcg
     2521 tgtaggtttc gccactggca ttcatcgcca cactcaagct ctgaaccgag ttgccggtca
     2581 aaagcgccgc gacggcatgg ccgccttcgt gaatgaaagt aacgaagatg cgaaacggat
     2641 aacttaagat ctcggcaaac ggaatgaacc acaacgcgat cgagagcacg gcggcgagga
     2701 gcagagtcat cgcttgcggg cgagcatcat gggaaagtct cagcttcatt cttaagtcct
     2761 ccgacgagtg gcacagactt cagtctgtga accttgatcg tgaaacatca cagactaaag
     2821 tctgtgccac gatcatgaac gcagaatgtc ctcagcttgt tccctcacga tttttctcac
     2881 gcagatagtc gccggatttg ccgcccgtct tcagttccag tcgaaggtcc gtaatcgtca
     2941 tcgctttatc gacggctttg cacatgtcat agatggtcag cgccgccacg gacacggcag
     3001 tcaaggcttc catctcgacg ccggtttgcg ctcgcgtcgt aacttctgct tcgagataca
     3061 cgctctcgtc ctgcaactcg gtgcgcacgt ctatgtgagt cagcggcaac ggatgacaaa
     3121 gcggaatcaa ctctgcggtg cgcttggcgg cgacgattcc agctagccgc gcggtttcga
     3181 gtggatcacc tttcggggtt tggtgatcgc gaatcgcggt gactgtttct gacgacatca
     3241 ggacgcgcgc cgatgcaatc gcgcgacgta tcgtgatcaa cttttcgctg gtgtcaacca
     3301 ttttagcgtg accttgttcg tcgatgtgtg ttagttcctt catgatcgag ctgggctaga
     3361 aggcgaatta accgcagagg cagcagaggt tttcgcagag gacgcggagt cgtcgtatcg
     3421 gttgacaact ctccttatcc cctcacgcaa atgcagcacg ttgaagttca ttattagccc
     3481 gaaccgacaa ttcgccagct tgaggtaggt caggacctgc gccagatgta tatcgtttat
     3541 cgcttccacg gatttgattt caagaatcag ccgctgctca atcataaggt ccacccggta
     3601 gccgcactcc aacttaacat ctgaataaaa aaatggcatc ggcttttgtt tttcaacaaa
     3661 caggcctgct ttgaccaatt caaagaacaa acattcctga taggccgact caagcagccc
     3721 aggaccgagc gcgctgtgca ctttcatcgc gcaaccgatc acgttctgag taagctcgta
     3781 gtcagtcaaa gctctgtctc cttctccggg ctcctctgca tcctctgcga aaccctctgc
     3841 gtcctctgcg gttaagtttt tgcgaccttg cttagaacag catgaacgat caatgtattc
     3901 ccgcccaaca aaacctcatc cgaagccaat tcttcagtcc agcgttcagc gcgtttcgtt
     3961 gccggcgtca gccgtgcgat caatcgaatc agcgcgacga tcggccagta gagccacgcg
     4021 tggcgtttcg gcttatcgca atgcaaactt gcgatttgaa agccgtactt ctccagaatg
     4081 taacgcaatt ctgaatagcc gatcgggttg acgtgcgcgg cgatctcttc gcgattgtcg
     4141 tactccacac gcaggcgtgc agcttgcgcg caagtgattg gtttgaagtg tgacgtgtaa
     4201 ccgtaaacga gccacttcaa acgttcttcg atattcaaaa tgttcggcac gctaacgatc
     4261 aaatatccac atggtcgcat cacgcgcgcg aattcgcgca tcgcctgctg tggattttca
     4321 atgtgctcga gtccttccag acaagtaaca tagtcgaacg actcgtcatc gaacggcaga
     4381 tcgcggctaa gatcgccttg cttgatctca acgcccgcta gccgaaaaat ctcgggataa
     4441 agatcgcagc accgcacgtc gaatcccgcc gcgattaagc gcgccgccag tgctccctgt
     4501 cctgccggca catcgagcag cgcaccgcgc ggcagttttt ccaggacctc aacgactgtg
     4561 tcgtggatcg cctgatgagc caaaggctgc gcctgaccgg cggcgctggc tccgctttca
     4621 aggactactg gcgatgttga cgtgggctgc atcgagcaaa acctactgcg atttcggtgt
     4681 tcgcgaacga ttcctgaaaa cgtgtcgttt ccgccgagaa atctgcttgc ttttcggcga
     4741 gcataacaga ataattcccg cgcgaaaatc cgtttcccgg cttgtgcgcg taaagtacgt
     4801 gattttcatt taatcgagga ttgccccctg aggttaacgt gttcgagacc gacaaggaag
     4861 tgcttgactg gtacgagcaa cagccgcgct ccttaacaaa agaatttgtc gacagcattc
     4921 catggcgcaa cgtttcgaac tacgcgctga attcggcgtt tgtgcccgtg ctgatttaca
     4981 tgcgcgacgt cgaatatttc accgacattt attaccgcga actcatgcgc acgcccacgg
     5041 gaagagatcc gattatcagg aagttcatgg atcgatggag cgtcgaagaa aaccagcacg
     5101 ccgacttgtt gaatcgtttc ttaaatgaag cggggattac aactcacgag aaatggcaag
     5161 ccgaagctaa ggcaaagata ccctggggct atacaatcaa tgcctatctt ctgtactggg
     5221 ccgttaagcc attcggaaaa tatttccatg gtgcccacat ggcctggggc gcgatcaacg
     5281 agattacaac cctgcaagca tatcgacgcc tatcggaact tgccggccat ccagtcctaa
     5341 cgcacttgtt gacggcaatc atgcaggaag agtcgattca ttcgaatttc tattggagca
     5401 tcgcaaagct aaaattgagt caggcaaaac tttcgcgcga cctggcgcgg tttagtattc
     5461 gcaagttttg ggcgcccgta ggtcaggggc cgaagcctga aaacgatacg aactatgtgg
     5521 tctcgacgct gttccgcggg ccgagcggtt tggagctctt caatcgcaca gtggcgagcc
     5581 ggattgcccg tctgccaggt ttcaatggat tcacggcttt gagtgagcgg gtggcgccga
     5641 ttgtgcaggg ttgaagtccc gtagggacgt catatttata gctaaaagcg tggaactgag
     5701 aaatcaagct ccatcaggag cgacatctcg ctcctgatgg agcttaaact ttggggttcg
     5761 ccggtactat aaatatgctg ctcctacgga gcagagttgg gtaggcgaac tatcctcgct
     5821 actgaattcg aagcgacaga cttcacgccc gcaggaatga taattagcgc cgtcgcgcgc
     5881 gcgaacgcca caaaatctga cgaaccgccc cactccaaag gttcagccag cagagttccc
     5941 ttttcatccg ttcgcaagac agccggcaaa tagctctcgc ggtcgattga acctttcacg
     6001 cttcgtgcga gcaccgcggc ttcttcgatc agtgccggtt gtttcgctcc ttgcatcgcg
     6061 cgcagcgccg tgcgtgcgaa cagattgaga gtgacggcaa ctgaaaccgg atttccgggg
     6121 agcccgaaca ctagcgtgtt gccgagacgt gcgaagaggg tcggtttgcc gggccgcagc
     6181 gcgacgcgtt cgaaaaagat ttccgcgcct aattctttca acgccgcttt ggtaaaatcg
     6241 taaacgccca tcgaaacgcc accggacgtg atcagaacat ctgaacgttc ggcagcagcc
     6301 gcaatttgtc ttttcaattc ttcggtgtca tcacccgcca acggcaagcg ctcgacagtc
     6361 gcgccggccg tcgaagcata cgcggcgatt gtgtagttgt tcgaatcgcg aatctgatcg
     6421 cggccaggtt tttgatcgac atcgacaagc tcgctgcccg tggccatcac ggccacacgg
     6481 ggcctgcggc caactttcac ctgtgcatag ccaaacgatg ccaacgtcgc gatcatcgcg
     6541 gcattgatgt cttcgcctgc acgcaagacg gtttcgccgg ctttgatttc ggcagcttgc
     6601 ttcacaatcg atctgccggc ttcgactgac tcaagaatct caacctgtga tccgccgtcg
     6661 atttcgcgcg tcagctcgac ttgctgtacc gcatccgcgc cgccgggaac cggcgcgccg
     6721 gtcatgatgc gcaccgcctc gccagctttc atttcgtgat gccagccgct gcccgctgcc
     6781 gattcgccga caattcgcaa acgcgcgggc gtgttcgcca catctgccgc tcgcactgcg
     6841 taaccgtcca tctgtgcgcg atcgaatggc gggagatctg aatcggcaac gatgtcctca
     6901 gcaagaaaac gcccgagcgc atcggcgagg aagatgcgct cgggttctaa tggcggcgtt
     6961 tgggccgtga cgacttggat ggcttcagcg acaggtgtca ttcacgtctg attgtagctc
     7021 aacttg
//
LOCUS       DASZZE010000445         5356 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_175629, whole genome shotgun sequence.
ACCESSION   DASZZE010000445 DASZZE010000000
VERSION     DASZZE010000445.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5356)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5356)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5356
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175629"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..534)
                     /locus_tag="VHD88_08605"
     CDS             complement(<1..534)
                     /locus_tag="VHD88_08605"
                     /inference="COORDINATES: protein motif:HMM:NF012899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21894.1"
                     /translation="MLAKPTIMKFGGTSVADAAAFERVARIVRAHKDARPVVVVSAMS
                     GVTDALLRGIETAASGDVSSALASIDAHLARHLEVARALASENDASRFATTITERRGE
                     LGALLQKVERQQANRPALGDEIVSIGEQLSATVLALVLQTADLPAVYVDARRVVVTDS
                     EHGRANPLMAKTAKRAAK"
     gene            735..3503
                     /gene="secA"
                     /locus_tag="VHD88_08610"
     CDS             735..3503
                     /gene="secA"
                     /locus_tag="VHD88_08610"
                     /inference="COORDINATES: protein motif:HMM:NF009538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0017038 - protein import [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HVS21895.1"
                     /translation="MSFDKVLTKVFGSSNERFLKGIRPLIAQINELEPAIKKLSDEQL
                     RERTYFFKAQIAEAVKDARDKDDRQYREQEALSEILPEAFALVREASVRTTGMRHFDV
                     QMVGGIVLHQGKIAEMRTGEGKTLVATLPAYLNALTGRGVNVITVNDYLASRDAEWMG
                     QIYRFLGLTVGCIQNDMDDFERQTAYAADITYGTNNEFGFDYLRDNMKFDLATCVQRD
                     HYYAVVDEVDSILIDEARTPLIISGPSEESTDKYYQANTIIPQLQRGEELDEGKKTGD
                     YIVDEKNHSAVLTEDGVDKTERLLGVGNLYEPSNMELLHCVEQALKAHTLYRLDHQYV
                     VQNGEVIIVDDFTGRLMKGRRWSDGLHQAVEAKEEVKIERENQTLATITLQNYFRLYE
                     KLSGMTGTAETEAGEFHSTYKLDVMVIPTHMPMVRKDNSDVIYRTLPEKWDAVVEEIK
                     ELYEHGQPVLVGTVSVENSELIARRLQRVGVPHNVLNAKYHEREAEIVAQAGRKGAVT
                     IATNMAGRGTDILLGGNPDFMAREFLQEDEIDPDEATEDQWKEVFARAKRIVESEHKE
                     VVERGGLHILGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDDLMRIFAGDKVKA
                     LMQRLGMEQGVAIESKMVSKRIAAAQKSVEGRNFETRKHLLEYDDVMNKQRETIYGLR
                     RQLMEEPDQREYLVGETGVARDLLADMTKQYLDPNVSPDDWDVENYKVQIHSIYGIDG
                     DAEAIDFRESTSSEIDEAIWEKLKARYADKEKQIGEEAMRTYERIIMLNIIDAQWKDH
                     LLALDHLKQGIGLVGYGQKDPLVEYKKESFDMFQAMLDRIDTFTIRSLFNLQVVAEKA
                     PDELQRRRAARRSSMNFTGPNQGASAAGEEAGKAKPIVRSAPKVGRNDPCPCGSGKKY
                     KKCHGAAA"
     gene            3582..4373
                     /locus_tag="VHD88_08615"
     CDS             3582..4373
                     /locus_tag="VHD88_08615"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HVS21896.1"
                     /translation="MTQRLEVAVFLSLALFVLATSTNAQHTAGSASEDRDRGVELYKQ
                     GDARGAVDALRAAVKRHKDDISAWHYLGLALEQKGDTGSASKAYEKAAKLGDIELDRQ
                     MNQAPSSKEIGRALMSIRSQLVEAAESAEKYLALNSKLSKSKREEWNVRASSLRGFAD
                     LASDDDLRLYSGKDVTTKARVLNKPEPTYTEEARRNQTTGTVVLRCIFGANGKVFGIR
                     AVSSLPDGLTERAISAARQIRFIPATKDGHPVSMWMELQYNFNLF"
     gene            4388..5182
                     /locus_tag="VHD88_08620"
     CDS             4388..5182
                     /locus_tag="VHD88_08620"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HVS21897.1"
                     /translation="MNKSRSFAILIILTVLAISMLPGNGSPASACFQLPAPAASEERD
                     RGIKLYEQGDATGAIEALRDAVKKNKDDGDAWHYLGLALLLKGQKDEARKAFEKAATI
                     RLSSMASTWPISNNSDPNARRLKAAEKYQLVIESFEKYLEVTPKPTADWIDELEALRF
                     YHDYCSGLRNEETIMSTKEATTRLRILDKPLPDFSGTRASGTSVLRALFASDGTVKHV
                     LVLRRVEPRFDQACIEAAKRVNFEPAIKDGHPVSMILQLEYRREIY"
BASE COUNT         1293 a         1464 c         1521 g         1078 t
ORIGIN      
        1 tttggctgcg cgcttcgcgg tttttgccat cagcggattc gcacgtccat gttcgctgtc
       61 ggtgacaacg acgcggcgcg cgtcaacata gactgccggc agatcggcgg tttgaagaac
      121 caaggcgagg accgttgccg aaagctgctc gccaatcgaa actatttcgt cgcccaaagc
      181 tggacggttc gcttgctgac gctcaacctt ttgcaggagc gcccccagct ctccgcgtct
      241 ttctgtaatc gttgtggcaa aacgtgacgc gtcattctca cttgcgagag cgcgcgcgac
      301 ttcaagatgt cgggcgagat gagcatctat tgatgcgaga gccgaactga catcgccgct
      361 ggccgcggtt tcgatgcctc gcaacagggc gtcggtaact ccgctcatcg ctgacacgac
      421 gacaaccggc cgcgcgtctt tgtgagcgcg cacaatacgc gcaacgcgct caaacgccgc
      481 cgcgtcagcg acggacgtgc cgccaaattt catgatggtt ggtttcgcta acatttgtat
      541 tgatctttct ctgtgtcctc tgtggtgaat tcgatctaac cacagaggtc acagagaaaa
      601 caaaaagggg ctcgctttgt caagacggat caggctcggc ttgattggca actctgcgct
      661 ctcgtacaat ctcacattgc aaacgcgtag tagttttcac cattgccaaa catttgaaat
      721 aaccaagagc aatcatgagt ttcgataagg ttctgaccaa agttttcggc agcagcaacg
      781 agcgctttct gaaaggcatt cgtccgctga ttgcccaaat caatgagctt gagcctgcca
      841 tcaagaagct ttccgacgaa cagttgcgcg agcggactta cttctttaag gcgcagatcg
      901 ccgaggcggt caaagacgcg cgcgacaagg acgatcgcca gtatcgcgaa caggaagcgc
      961 tgagcgaaat tctcccggaa gctttcgcgc ttgtgcgcga agccagtgtg cgcaccacgg
     1021 gcatgcgcca cttcgacgtg cagatggtcg gcggcatcgt tttgcatcag ggcaagattg
     1081 ccgagatgcg caccggcgaa ggcaagactc tcgttgccac attgccggct tatctgaacg
     1141 cgctcaccgg gcgcggcgtg aacgtcatca cggtgaacga ctacctcgct tcacgcgacg
     1201 cggaatggat gggccagatt tatcgctttc tcggactcac ggtcggctgc atccagaacg
     1261 acatggacga tttcgagcga cagactgctt acgctgccga cattacgtac ggcacgaaca
     1321 acgaattcgg cttcgactat ctgcgcgaca atatgaagtt cgatctggcg acgtgcgtcc
     1381 agcgcgatca ttactatgca gtcgttgacg aggttgactc gatcttgatc gacgaggcgc
     1441 gcacgccgct gatcatttcc ggtccttcgg aagaatcgac cgacaagtac tatcaggcta
     1501 acacaatcat tccgcagctt cagcgtggcg aagaactcga cgaaggaaag aaaaccggcg
     1561 actacatcgt tgatgaaaag aatcattccg ccgtgctgac cgaagacggc gtggacaaaa
     1621 ccgagcggct gctgggcgtc ggcaatcttt acgaaccttc gaacatggag ctgctgcatt
     1681 gcgttgagca agccttgaaa gcgcacacgc tttaccggct cgatcatcag tacgtcgtgc
     1741 agaacggcga agtgatcatc gtcgatgatt tcaccgggcg cttgatgaaa ggtcgccgct
     1801 ggtctgacgg tttgcatcaa gccgtcgaag ccaaggaaga ggtgaagatc gagcgagaga
     1861 atcagacgct cgcgacgatc actttacaga attatttccg gctctacgaa aaactttccg
     1921 gcatgaccgg caccgcggaa acggaagccg gcgagtttca ctcgacttac aaactcgatg
     1981 tgatggttat cccgacacac atgccgatgg tgcgcaaaga caattcggac gtgatctatc
     2041 gcacgctgcc ggagaaatgg gacgctgtcg tcgaagaaat aaaggaactt tacgagcatg
     2101 gccagccggt gctggtcggc acagtctcgg tcgagaattc agaactgatc gcgcgccgtt
     2161 tgcagcgcgt cggcgtcccg cacaacgtgc tcaacgcgaa ataccacgaa cgcgaagccg
     2221 agatcgttgc gcaggccgga cgcaaaggcg cggtgacgat cgccaccaac atggcgggtc
     2281 gcggcacgga cattctgctg ggcggcaatc ccgatttcat ggcgcgcgag tttttgcaag
     2341 aggacgagat cgatcctgac gaggcgaccg aagatcaatg gaaagaagtc ttcgcgcgcg
     2401 cgaagcgcat tgtcgagtca gagcacaaag aagtggtgga gcgcggcggt ctgcacatcc
     2461 tcgggactga acgccacgaa tctcgtcgca tcgacaatca gcttcgcggt cgctcaggcc
     2521 gtcagggcga tccgggctcg tcgcgcttct tcctctcact cgaagacgat ctgatgcgca
     2581 tcttcgccgg cgacaaagtt aaggcgttga tgcagcgtct gggcatggag caaggcgtcg
     2641 cgatcgagtc aaagatggtt tcgaaacgca tcgccgccgc gcagaagtcg gtcgaaggtc
     2701 gcaacttcga aacgcgcaag cacctgcttg agtacgacga cgtgatgaac aagcagcgcg
     2761 agaccatcta tggtctgcgc cgccagttga tggaagagcc ggaccagcgc gagtacctgg
     2821 tcggcgaaac gggcgtggcg cgcgacctgc tcgccgacat gaccaagcag tacctcgatc
     2881 cgaatgtgtc gcccgacgat tgggatgttg aaaactacaa ggtacagatt cactcgatct
     2941 acggaattga tggtgacgct gaagcgatcg acttcagaga atccacatcc tcggaaatcg
     3001 atgaagccat ctgggaaaaa ctaaaggccc ggtacgctga caaggaaaag cagatcggcg
     3061 aagaagcgat gcgcacctac gagcgcatca tcatgctcaa catcatcgac gcgcagtgga
     3121 aggatcactt gctggcgctg gatcacttaa agcagggcat cggcctggtt ggttacggcc
     3181 agaaagatcc gctggttgaa tataagaagg aaagcttcga tatgtttcag gcgatgctcg
     3241 accgaatcga caccttcacg atccgctcgc tcttcaacct gcaagtcgtc gccgagaaag
     3301 cccccgatga actgcaacgc cgccgcgccg cacgtcgctc gtcaatgaat ttcaccggcc
     3361 caaatcaggg cgcatcggcg gcgggcgaag aagccggcaa agcgaaaccc atcgtgcgca
     3421 gcgcgcctaa ggtcggccgc aacgatccgt gtccgtgtgg ttcaggaaag aaatacaaga
     3481 agtgtcacgg cgcggcggcg tagaatgtag cgcaagatgc aatcttgcga cacgatccca
     3541 acgcgtaagg agaaatcaaa atgcagagtc ctcacttccc aatgactcag cgcttggaag
     3601 ttgcagtgtt cttgtcgctc gcgcttttcg tcttggccac gagcacgaat gcgcagcaca
     3661 ccgcgggcag cgcttccgaa gatcgagatc gtggcgtcga actgtataaa caaggtgacg
     3721 ctaggggcgc ggtggacgcg ttacgcgccg cggtcaaacg tcataaggat gacattagcg
     3781 cctggcacta tcttggcctt gcgctagagc aaaaaggtga cacaggctcc gctagcaagg
     3841 cttatgagaa agccgccaag cttggagaca ttgaattgga cagacagatg aaccaggcac
     3901 cgagtagtaa ggagataggc cgcgcgttga tgtccattcg atcacaacta gtagaagcgg
     3961 ctgagagcgc cgagaagtat ctagcgttga attcgaaact atccaagtca aagcgggaag
     4021 agtggaacgt gcgggcgagt tcgctgcgtg gatttgccga cctcgccagc gatgacgacc
     4081 ttaggctcta ctcgggcaaa gacgtcacaa ccaaagcacg ggtcttgaac aaacccgaac
     4141 caacttacac ggaagaagct agaaggaacc aaacgaccgg caccgttgtg ctgcggtgca
     4201 ttttcggtgc gaatggcaag gtcttcggga ttcgagccgt ctcttcctta cccgatgggt
     4261 tgactgaacg ggccatcagc gcagcacgtc aaataaggtt cattccagca accaaagacg
     4321 gtcatcctgt ttcaatgtgg atggagctcc aatacaactt caatcttttc taactacgga
     4381 ggttgttatg aacaaatcgc gcagcttcgc tatcttaatt attcttacag tgctagcgat
     4441 ctctatgctg ccgggaaatg gctcgcccgc gagtgcttgt ttccagctac cagcgcctgc
     4501 cgcttctgag gaacgcgatc gcggaatcaa actctacgag caaggcgatg cgacgggtgc
     4561 gattgaagcg ctccgcgatg ccgttaagaa gaacaaggac gatggagatg cgtggcatta
     4621 ccttggttta gcgttactgc tcaagggaca gaaggatgag gcacgcaagg ctttcgagaa
     4681 ggccgccact attcgcttga gtagcatggc gagcacctgg ccaatctcaa acaactctga
     4741 tccgaacgcg cgtcgcctga aagccgccga gaaatatcaa ttggtgattg agagcttcga
     4801 aaagtatctc gaggtcactc cgaaaccgac tgcggattgg atcgatgagc ttgaggcgct
     4861 tcgtttctat cacgattact gtagcgggct gcgcaatgaa gaaacgatca tgtcaacgaa
     4921 ggaagccacc accagactgc gcatcctgga caagcctttg cctgactttt cgggtacgcg
     4981 ggcctcaggc acttccgtct tgcgcgcgct gtttgcctca gacggtacgg tcaagcatgt
     5041 gcttgtgctc cgcagagttg agcctcgctt tgaccaggcg tgtattgagg ctgccaagag
     5101 agtaaacttc gaaccagcaa tcaaggacgg acatccggtc tcgatgattc tccagctcga
     5161 atatcgccgt gagatttatt agtagctttc catgacctcc agcactacct caaccaatcc
     5221 cgtcgttaag tcgatcatct ccggcgcagc tccgccagca gcgcgcatgg ccgcagcgcg
     5281 tggattgctg ccgctgcccc aagctgatct tcttgaagcg ttggttcatt tgtgcgctga
     5341 tggcgacgcc gaggtc
//
LOCUS       DASZZE010000446         3688 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_111654, whole genome shotgun sequence.
ACCESSION   DASZZE010000446 DASZZE010000000
VERSION     DASZZE010000446.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3688)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3688)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3688
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_111654"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1396)
                     /locus_tag="VHD88_08625"
     CDS             complement(<1..1396)
                     /locus_tag="VHD88_08625"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HVS21898.1"
                     /translation="MFEFYNHNTDAEATVLRKLRMWIVALAVVCVLTGVGIGAILAGR
                     PAGAQDELQGAARAADALSASFAEIARRVEPAVVNIDTFQSSSEIAETDNEDKEDRTP
                     SNPLYDMLRRQPPRPTRGVGSGFIIDPKGFIVTNQHVIDGASRITVGLQTGERFRGKV
                     VGVDQETDLAVIKIDAGRDLPMMKLGDSNSAQVGDWVLAIGSPFGLDQTVTAGIISKK
                     ERDSQAFQTFQRFLQTDAAINRGNSGGPLVNMHGEAIGVNSQIATLTGDYNGIGFALP
                     SNEAKFVCEQILSGGKVKRGYLGVTLDSVRGEFAHVYGLTEAKGAIIVDVQPDRNGQP
                     TPATKAGLQVNDVIVEFNSQPVQDSQDLIAKIAGTPVGQTVTLTYLRDVDGKLDRRTA
                     NVTLGERPNFFARESETSASALKNAATKTGGARLGLTLAELTPQLISDKHLNGVKGLY
                     VKEVDPNGLAADVRP"
     gene            complement(1537..2544)
                     /locus_tag="VHD88_08630"
     CDS             complement(1537..2544)
                     /locus_tag="VHD88_08630"
                     /inference="COORDINATES: protein motif:HMM:NF019845.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HVS21899.1"
                     /translation="MKALRYENQKLFVADVPKPDVDGEAVVRVTLSGICNTDLEIARG
                     YAGFQGTLGHEFVGVIESVSEARASARACPPGEPLLTRGLLTPGQRVVGEINAGCGVC
                     DLCCAGDPRHCPRRTVLGIVGRDGAHAEFLRLPMVNLLSIPDEVSDERAVFTEPLAAA
                     CGILERAPMTENAHVAIVGDGKLGLLCAQVLATTGAAVVLIGKHQSKLQIAARRGIET
                     MMVDEAGSRAKTFDVAVEASGSPTGFALALDLLRPRGVLVLKSTFHGATEMDAARIVV
                     DEISVVGSRCGRFAPALELLKTNAVDVENLISAEFALADGVRATERASQTGVLKVLLR
                     P"
     gene            complement(2634..3122)
                     /locus_tag="VHD88_08635"
     CDS             complement(2634..3122)
                     /locus_tag="VHD88_08635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21900.1"
                     /translation="MAVVKFILALALVGGLFIAGWNVYRRLPSDEAGAPRGTGAETEV
                     IVKYEAPELNGKGNDVVIDAYPIDLESAQREFLNRPYQDKRFEDFLAKRMREKTPVRA
                     RLDENGHAVVKLASGSWLIHAVAALPGSESIEWRLPISVNGSQQTIELTAQNVWERTK
                     KF"
     gene            complement(3141..3266)
                     /locus_tag="VHD88_08640"
     CDS             complement(3141..3266)
                     /locus_tag="VHD88_08640"
                     /inference="COORDINATES: protein motif:HMM:NF024834.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HVS21901.1"
                     /translation="MSDERLFNSISNGKGKMPSFKKTLSEDQINALVTYVRHFKK"
     gene            complement(3263..3514)
                     /locus_tag="VHD88_08645"
     CDS             complement(3263..3514)
                     /locus_tag="VHD88_08645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HVS21902.1"
                     /translation="MKEGIKFWLVLALTVALFVVLVITHSAGTQASGNTALLTPDDAK
                     TTYGAKCAGCHGKDGRGKTFRGKLARARAILPTRRGRTT"
BASE COUNT          739 a         1130 c          999 g          820 t
ORIGIN      
        1 taggccgaac atcagcggcc agtccgttcg gatcgacttc cttgacgtag agtcctttca
       61 caccattcag atgtttatcc gaaatgagct gaggtgtaag ctcggccagc gtcagaccga
      121 gtcgcgcgcc gccggttttc gtcgcggcgt ttttcaacgc ggatgcggac gtttcggatt
      181 cgcgcgcgaa aaagttcggg cgttcaccca gagtaacatt cgcggttcga cgatccagct
      241 tgccgtcaac gtcgcgcagg taagttagag tcacggtttg gcccaccggc gtgccggcga
      301 tcttggcgat caaatcctgt gagtcttgca cgggctggct gttgaattcg acgattacgt
      361 cgttcacttg caggccggct tttgtcgcgg gcgtcggctg gccgttgcgg tccggctgca
      421 cgtcaacaat gattgctccc ttcgcctcgg tcagtccgta cacgtgcgca aattcgccgc
      481 gcaccgaatc cagcgtcacg cccagatatc cgcgcttaac ttttccgccg ctgagaatct
      541 gttcgcaaac aaatttcgct tcgttcgaag gcagggcaaa gccaatgccg ttgtaatcgc
      601 cggtcagcgt ggcaatctgc gagttcacac cgatcgcttc gccgtgcatg ttgaccagcg
      661 ggccgccgct gttgccgcga ttgatcgccg catcagtttg cagaaaacgt tgaaaggttt
      721 ggaacgcctg cgagtcgcgc tctttcttgg aaataattcc tgcggtcacc gtttggtcaa
      781 gaccgaacgg cgagccaatc gccagaaccc aatcgccgac ctgggccgag tttgaatcac
      841 ccagcttcat catcggcaga tcgcggccgg catcgatctt gatcaccgcc agatcggttt
      901 cctgatcgac gcccacgact ttgccccgaa acctttcgcc ggtttgcaga ccgacagtaa
      961 ttcgcgaagc tccgtcgatc acgtgctgat tggtcacgat gaaacctttt ggatcgatga
     1021 tgaaaccgct gcccactccg cgtgtcggcc gcggcggttg acgacggagc atgtcgtaaa
     1081 gcgggttgct cggcgtgcgg tcttctttgt cttcgttatc ggtttccgca atctccgacg
     1141 aagattggaa cgtgtcaatg ttcactaccg cgggctcgac gcgccgcgca atttccgcaa
     1201 acgaagcaga gagcgcgtcg gctgcccgcg ccgctccctg caattcgtcc tgagcacctg
     1261 ctggccggcc cgccaggatc gcgccaatgc ccacgcccgt tagcacgcag acgaccgcca
     1321 gcgccacgat ccacatacgc agcttgcgca ggactgtcgc ttcggcgtca gtgttgtgat
     1381 tgtagaactc gaacatgatt caccgcctta gaaaaatcgc cgcttgactc gtgcttcgtc
     1441 cgagggccca gttcagcgct accctttttc agttttagcg aagcactttt tggcagtata
     1501 gcgaaaggtc gcgggaaaaa ctagaagtcg aggagttcag ggacgcagca gaactttcag
     1561 cacgccagtc tgtgaagccc gctcggttgc gcggacaccg tcagcaagcg cgaactctgc
     1621 gctgatcaga ttctcgacat cgacggcgtt ggttttgagc aattcgagcg ccggcgcgaa
     1681 acgtccgcag cgcgaaccga cgacactaat ttcatctacc acgatccgcg ccgcgtccat
     1741 ttcggttgcg ccatgaaaag ttgacttcaa cacgagcaca ccgcgcggac gcagcaagtc
     1801 gagagcaagt gcgaatccgg tcggcgagcc ggaagcctcc actgcgacgt caaacgtctt
     1861 agctcgcgat ccggcttcat cgaccatcat cgtctcgatg ccgcgccgtg cggcgatttg
     1921 aagtttgctc tgatgcttgc ctatgagcac gacagccgca ccagttgtcg ccaacacctg
     1981 cgcgcacagc agaccgagtt tcccgtcgcc gacgatggcg acgtgcgcat tttctgtcat
     2041 cggtgcgcgt tcgagaatgc cgcaggccgc cgcgagtggt tcggtgaaca ccgcgcgctc
     2101 gtcagaaact tcatcaggaa ttgaaagcaa attcaccatt ggtagtctta gaaattcagc
     2161 gtgcgcaccg tcacggccga cgatgccgag caccgttcgt cgcggacaat gacgtggatc
     2221 acctgcacaa cagagatcgc agacgccgca gccggcgtta atctcgccga cgacacgttg
     2281 accgggtgtc agtagcccgc gcgtgagcaa gggctcgccg ggcggacaag cccttgctga
     2341 cgcgcgggct tctgaaacgc tttcgatcac gccgacgaac tcgtgcccca gcgttccttg
     2401 aaagccagcg tagccgcgcg cgatttccaa atccgtgttg caaattccgg acagcgtcac
     2461 gcgcacgact gcttcgccgt caacgtcagg tttcggcacg tcagccacga agagtttctg
     2521 attttcgtaa cgaagggctt tcataaaaac agagactaga gactagagac tagagactag
     2581 agactagagg ctcgcgcgag tctgtcgcgc gctctggtcc ctgacaacta ttctcagaat
     2641 ttctttgttc gctcccaaac attctgagcc gtcagctcga tcgtttgctg gcttccgttt
     2701 acgctgatcg gcaaacgcca ctcgattgat tcactgccgg gcagcgccgc gaccgcatga
     2761 atcaaccaac tgccggaagc gagcttcacc accgcgtgtc cgttctcatc gagtcgtgct
     2821 cgcacgggag tcttttcccg cattcgcttc gcgagaaaat cttcgaagcg tttatcctga
     2881 taaggtcggt tgagaaactc acgctgcgcg ctctcgaggt caatcgggta cgcgtcaata
     2941 actacgtcgt tcccttttcc gttgagttcg ggcgcttcgt acttaacgat gacttcagtt
     3001 tcggcgccgg tgcctctggg cgcgccagcc tcgtcacttg gcagccgccg atacacattc
     3061 cagcccgcga tgaaaagtcc gccgaccagc gcgagagcaa gaatgaactt cactacagcc
     3121 acgccaagcc ctcttttcaa tcactttttg aagtgccgca catacgtcac cagcgcgttg
     3181 atttgatctt ccgaaagtgt cttcttgaac gacggcatct tgccttttcc gttgctgatg
     3241 gaattgaaca atcgctcgtc gctcacgtcg ttctgccacg tcgcgtcggt aagatcgcgc
     3301 gcgcgcgcgc gagcttgccg cgaaatgtct tgccgcgacc gtctttgccg tggcacccgg
     3361 cgcacttcgc tccgtaagtc gtttttgcat cgtcgggagt aagcaatgca gtgtttccgc
     3421 tggcctgtgt tcctgcggag tgcgtgataa cgagaaccac gaagagtgca accgtcagcg
     3481 ccagcacgag ccaaaacttg attccttctt tcatgcgatt cagcctcctc acccagtctg
     3541 catttcgatc tttagttggc cccctcgcga tgtgcgttgc ttactttcgc aaaacagcaa
     3601 atcgcgcggc atcctttata actcgaattc acaatctttg tctcgcccga tcaaacgccg
     3661 ggcgactgcc gtggttgaaa gccgcgcc
//
LOCUS       DASZZE010000447         3317 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_64380, whole genome shotgun sequence.
ACCESSION   DASZZE010000447 DASZZE010000000
VERSION     DASZZE010000447.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3317)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3317)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3317
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64380"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..970
                     /locus_tag="VHD88_08650"
     CDS             <1..970
                     /locus_tag="VHD88_08650"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HVS21903.1"
                     /translation="CDLVCAVDLGGTNLRAANIDRDGRIYVRVRTATPETVKAEDIVS
                     AIVAAVRECETEGLNRGAQIQAISVVVPGSVHAETRVVVNAPNIPSLPGFRLASALRE
                     ALDRPVLLENDANAAALGEMWQGAARNCKTIICLTLGTGVGGAIILDGKLWRGVDGTA
                     GEIGHASVDPFGEVKCKCGNVGCLEVYASATAIVRMTRDKIAKHPGSALHSINADELT
                     SENICGAAIEGDEFAIEVFRSMGVYLGVAMADVVNIFNPEMIVIGGGVSAAWDLFAQH
                     AREEVIKRAFPVPAQRCQIVGAECGDDGGLLGAAWLAFPKGEGVRV"
     gene            993..1355
                     /locus_tag="VHD88_08655"
     CDS             993..1355
                     /locus_tag="VHD88_08655"
                     /inference="COORDINATES: protein motif:HMM:NF008911.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four helix bundle protein"
                     /protein_id="HVS21904.1"
                     /translation="MLKSYRELNVWQKGINLVVESYRFSAAFPKAEVYGLTSQIRRAA
                     VSIPANIAEGYGRGSRKEYLQFLIVAQGSLKELETHFIIAERLRYATQAQSQRLLTQT
                     DEIGRMLGSLIRKLKVSG"
     gene            1392..2921
                     /locus_tag="VHD88_08660"
     CDS             1392..2921
                     /locus_tag="VHD88_08660"
                     /inference="COORDINATES: protein motif:HMM:NF015052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3536 domain-containing protein"
                     /protein_id="HVS21905.1"
                     /translation="MPSLIIHGHFYQPPRENPWTGVVETEPSAAPFHDWNERIYSECY
                     QPNAFAALADLTTGEQQVVNNYANISFNFGPTLLSWLEENHGDTYARIIAADRESAIK
                     LGGHGNAIAQAYGHAILPLGNERDLRTQIRWGIADFRHRFGRDPEALWLPETACNDAI
                     MSALIDEGLRFVILAPHQAARVRAIGETEWREVNEQSIDTSIAYRYSRRDGSERSIAV
                     FFYDGPTSRAIAFENLLKSSSELVDRFAQIAFGRELVNIATDGETYGHHFKFGDVCLA
                     HALDVEAPSRDFEVTNYGKYLDEHPPTFDVEISNGPDCEGTSWSCTHGVGRWIRDCGC
                     HTGGEQGWNQAWRTPLQQALDLLRDENAAHFEATRETLFIDPWQTRDDSVALILDQYH
                     SREQFLYEHAARWLSADEQWRGLTYLELQRMLLLMYTSCGWFFNDISGIETIQILKYA
                     GHAIDLMEQLGLPPARERFLEILAEAKSNRPEMGTGADIYRRSVEPLKLVTEPGAVAT
                     G"
     gene            2962..>3317
                     /locus_tag="VHD88_08665"
     CDS             2962..>3317
                     /locus_tag="VHD88_08665"
                     /inference="COORDINATES: protein motif:HMM:NF014919.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21906.1"
                     /translation="MSRKKAQIVRSPRVSKGAVTTRASGETRASRKGAKAQSKGSKPS
                     KSSNDFSPTLGDIDLHLFGEGKHERIYEKLGAHLITHEGRRGVAFAVWAPNARSVSVV
                     GNFNGWDGAKHRMRSLG"
BASE COUNT          774 a          866 c          969 g          708 t
ORIGIN      
        1 atgcgatctg gtttgcgccg tcgatctcgg cggaacgaat ctgcgcgcgg cgaacatcga
       61 tcgcgacggt cgcatttacg tgcgcgtcag aaccgcaact cctgaaacag tcaaagccga
      121 agacatcgta tccgcgatcg tcgcagccgt acgcgaatgt gagacggaag gcctgaaccg
      181 aggcgcgcag attcaagcaa tctcagttgt cgttcccgga tcggttcacg cggaaacccg
      241 tgtagtcgtt aacgcgccga acattccttc tctgcccggt tttcggttgg cgtcggcgtt
      301 gagagaagcg ctcgaccggc ccgtgttgct tgaaaacgat gcaaatgcgg cagcactcgg
      361 cgagatgtgg caaggcgcgg cgcgcaactg caaaacgatc atctgcctca cgctcggtac
      421 cggtgtgggt ggggcaatca ttcttgacgg aaaactttgg cgtggagttg acggaacagc
      481 gggtgagatt ggtcatgcca gcgtcgatcc gttcggtgaa gtgaaatgca aatgtggcaa
      541 tgttggatgt ctggaagttt atgcgtcggc gaccgcgatc gtgcgcatga cgcgagataa
      601 aatcgccaaa catccgggtt ccgctttgca ctcaattaac gcggacgagc taacttcaga
      661 aaacatttgc ggcgcagcaa tcgaaggcga cgagttcgca atcgaggtat tccgcagcat
      721 gggagtttat ctcggagtcg cgatggcgga tgtcgtcaac atcttcaatc ccgaaatgat
      781 cgttattggc ggcggcgtct cagccgcgtg ggacttgttt gcgcaacatg cgagagaaga
      841 agttatcaag cgagcttttc ccgttcccgc tcaacgctgt cagattgtgg gcgcggagtg
      901 tggcgacgat gggggattgc tcggtgctgc ctggctggcg tttcccaagg gtgaaggggt
      961 tagggtgtag ggtatagcga aagagatacg cgatgctgaa gagttaccga gaactgaacg
     1021 tttggcagaa aggcattaac ttggtcgttg agagctaccg tttcagcgcc gcctttccca
     1081 aggctgaagt atacggacta acctcgcaga ttcgtcgcgc ggcagtttcc attccggcta
     1141 acatagcaga gggttatggt cgtggaagcc gtaaagagta tctgcaattc ctcatcgtgg
     1201 ctcaaggctc tctaaaggaa ttggaaactc atttcatcat cgcagaaaga cttagatatg
     1261 cgacgcaagc tcagagccag cgactgttga ctcaaaccga cgagatcgga cgcatgctgg
     1321 gaagtctgat tcgaaaacta aaggtttcag gttagtagag aactacacct acaccctaca
     1381 ccctacaccc tatgccctca ttgatcatcc acggccactt ctaccaaccg ccgcgcgaaa
     1441 atccgtggac aggagtagtt gagactgagc ccagcgccgc tccgtttcat gactggaacg
     1501 agcgaattta ttctgagtgc tatcagccca acgcttttgc tgcccttgcg gacctcacaa
     1561 ccggcgaaca gcaagtcgtt aataattacg cgaacatcag tttcaacttc gggccgacgc
     1621 tgttgagctg gctcgaagag aatcacggcg acacttacgc gcgcatcatt gccgccgatc
     1681 gcgaaagcgc gattaagctt ggcggtcatg gcaacgcgat cgcgcaagcg tatggccatg
     1741 cgattctgcc gcttggcaac gaacgcgatc ttcgcacaca gattcgctgg ggcatcgcag
     1801 atttccgcca tcgcttcgga cgtgatcctg aagcactgtg gcttcctgaa actgcgtgta
     1861 acgatgcgat catgagtgcg ctgatcgatg agggcttgcg attcgtcatt ctcgctccgc
     1921 atcaagccgc gcgtgtgcgt gcgattggcg aaactgagtg gcgagaggtg aacgagcaaa
     1981 gcattgatac gagtattgcc tatcgttatt ctcgtcgtga tggctcggaa agatcgatcg
     2041 cggttttctt ctacgacggg ccaacctcgc gcgcaattgc ttttgaaaat cttttgaagt
     2101 cgagcagcga attggtcgat cgctttgcgc aaattgcctt tggtagagag cttgtaaata
     2161 tcgcgactga tggcgagacc tacggccatc atttcaagtt tggcgatgtt tgtctggcgc
     2221 acgcacttga cgtggaagca ccctcgcggg attttgaagt cacaaactat ggcaagtacc
     2281 tcgacgaaca cccaccgaca ttcgacgttg agatcagtaa cggtcccgac tgtgagggaa
     2341 cttcctggag ttgcacccac ggtgtcggtc gctggatacg cgattgcggt tgtcacaccg
     2401 gaggcgaaca aggttggaac caggcatggc gcacgccgct gcagcaggcg ctggatctat
     2461 tgcgcgatga aaacgcggca cactttgaag cgacgcgcga aacgctgttc atcgatccgt
     2521 ggcagacgcg cgatgacagc gtcgcgttga ttctcgatca gtaccattcg cgcgaacagt
     2581 ttctttatga acacgccgcc cggtggctat cggcggatga gcaatggcgc gggctcacgt
     2641 accttgaatt gcaacgcatg ttactgttga tgtacacgag ctgcggttgg ttctttaacg
     2701 acatctccgg aatcgaaacg attcagattt tgaaatacgc aggccacgcg atcgacctga
     2761 tggaacagtt gggtttgccg ccggcgcgcg aacgctttct tgagattctg gcggaagcaa
     2821 agagcaacag acctgagatg ggaaccggcg cggacattta tcgacggtcc gttgagccgc
     2881 tgaagcttgt tacagaaccg ggagcggtag cgaccgggta atagcgttcg ccgctcccag
     2941 cattaagctg ttcgcacaag aatgagccgc aaaaaggcac aaatagtcag aagcccgcgc
     3001 gtcagcaagg gcgcagtaac gacccgcgcg tcaggcgaaa ccagagcttc acgcaaaggc
     3061 gcaaaggcgc aaagcaaagg gtccaagccg tcaaagtctt caaacgattt ctcgcccacg
     3121 ctcggcgata tcgacctgca tctctttggc gaaggcaagc acgaacgcat ctacgaaaaa
     3181 cttggcgcgc atttgatcac ccacgaaggc aggcgcggcg tcgcgttcgc cgtgtgggca
     3241 ccgaacgcca ggagcgtcag cgtcgttggc aacttcaacg gttgggatgg cgcgaagcat
     3301 aggatgcgca gtcttgg
//
LOCUS       DASZZE010000448         1721 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_64523, whole genome shotgun sequence.
ACCESSION   DASZZE010000448 DASZZE010000000
VERSION     DASZZE010000448.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1721)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1721)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1721
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64523"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..233)
                     /locus_tag="VHD88_08670"
     CDS             complement(<1..233)
                     /locus_tag="VHD88_08670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21907.1"
                     /translation="MPTADCEGNEINLTSFACQTKRNTVSLFSVLILFLACILGCKST
                     APGPSWTKTKLLAQNEDHPSKIIADGSFVYFVTG"
     gene            complement(245..>1721)
                     /locus_tag="VHD88_08675"
     CDS             complement(245..>1721)
                     /locus_tag="VHD88_08675"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HVS21908.1"
                     /translation="PKPTTPNYHQRDSSFTARDHYAFGPALLESMFSFKHFDANVWGQ
                     GTSPQILTPTVEQGNYFATLDRRSSRIEFLEVYTSPRKEFWGGSHEIKAGFDFNRVSD
                     ELRYAARPVRIVRADGSLAELIEFGVRPSRRILAANNEYSAFIQDRWLVKPRLSIDLG
                     LRFEDQRIANEENLAPRAGFAWSPTGSDRTVVRGGVGLFYDKVPLNIRGFSRYPERTV
                     TTYGADGQTIISRINFENVLVSSKPVTPLDFRHSDRDAGFVPLNLTWNLELDQTITRR
                     VLLRANFIDSHTRRIYVVNPELDFRGTSAIVLRSAGDATYRALEVTSRFTLKKDDAIY
                     VSYVRSRSRGDLNDFNSYFGDLGAPVIRPNQYSNLAFDVPNRVVAWGRVSLPRRSSIS
                     PIFEWRSGFPFSVRDEKQNFVGVRNSDLTRFPQFFSLDVELAKEFKLTKKYGMRLSVL
                     GFNLTNHFNPRDVHANISDRQFREFFASYRRYFTGGFDILF"
BASE COUNT          400 a          466 c          502 g          353 t
ORIGIN      
        1 ccggtgacga agtagacgaa cgacccgtcg gcgataatct ttgacggatg atcttcgttt
       61 tgcgcgagca gttttgtctt cgtccaggac ggccccggcg cggtcgattt gcacccgagg
      121 atgcacgcca gaaatagaat caaaaccgaa aacaaagaga cggtgtttcg tttggtttgg
      181 caggcgaagc tagtcaagtt gatttcgttc ccttcgcaat cagcagtggg catcgcgcag
      241 gccttcagaa gaggatatcg aagccgccgg tgaaatagcg gcggtaagaa gcaaagaact
      301 cacgaaattg tcgatccgaa atgtttgcgt gcacgtcacg cggattgaag tggttcgtca
      361 ggttgaaacc cagcaccgac aagcgcatgc catacttttt cgtcaactta aattcctttg
      421 cgagttcgac gtcgagcgaa aagaattgtg gaaagcgcgt cagatcagag tttctgacgc
      481 cgacaaagtt ctgtttctcg tcgcgcaccg aaaacgggaa gccgctgcgc cattcaaaga
      541 tgggcgagat gctcgagcgt cgcggcaaag atactctgcc ccaggccacc acgcggttcg
      601 gaacgtcaaa cgcaagattc gaatattgat ttggccgaat gacgggcgcg cccaggtccc
      661 cgaagtagct gttaaagtcg ttgaggtcgc cacgcgagcg cgatctcacg taggaaacgt
      721 aaatcgcatc gtccttcttg agcgtaaagc gcgaagtcac ttccagggcg cgataagttg
      781 catcacctgc cgagcgcaac acgatcgcgc tggtgccccg aaaatccaat tcgggattga
      841 cgacataaat gcgccgggtg tggctgtcga tgaagttggc gcgcagtaga accctccgcg
      901 tgatcgtttg atccagctcg agattccacg tcaggttcag ggggacgaag cccgcgtcgc
      961 gatcagagtg tcggaaatcg agcggcgtga ccggcttgga actcaccaac acattctcga
     1021 aattgattcg gctgatgatt gtctggccgt cggcgccgta ggtcgtgacc gtgcgttccg
     1081 gataacgcga gaatccgcgg atgttgagcg gcaccttgtc gtagaacaga ccgacgccgc
     1141 cgcgcacgac tgttcgatca gagccagttg gcgaccaggc gaaacccgcg cgcggcgcca
     1201 gattctcttc gttagcgatg cgctggtctt cgaatcgcaa gccgagatcg atactcagtc
     1261 tcggttttac cagccagcga tcctgaatga aggcgctgta ttcgttgttg gctgccagaa
     1321 tccgacgaga tggccgcacg ccaaattcga tcaactcggc gagtgagcca tcggcgcgca
     1381 cgattcgaac cggacgcgcg gcgtagcgca gctcgtcact cacgcgattg aaatcaaagc
     1441 cggctttgat ctcgtgcgag ccgccccaaa actctttcct cggagaagtg taaacttcga
     1501 gaaactcaat tcgcgatgag cgccgatcca gcgtcgcgaa gtagttgcct tgctccaccg
     1561 tcggcgtcaa gatctgcggc gacgttccct gtccccaaac attcgcgtca aagtgcttga
     1621 acgaaaacat cgattcgagc aacgctgggc cgaacgcgta atggtcgcga gcggtgaacg
     1681 aagaatcgcg ctggtgatag ttcggagtgg tcggctttgg c
//
LOCUS       DASZZE010000449         1609 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_276487, whole genome shotgun sequence.
ACCESSION   DASZZE010000449 DASZZE010000000
VERSION     DASZZE010000449.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1609)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1609)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1609
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_276487"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1292)
                     /locus_tag="VHD88_08680"
     CDS             complement(<1..1292)
                     /locus_tag="VHD88_08680"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF014625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019213 - deacetylase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PIG-L family deacetylase"
                     /protein_id="HVS21909.1"
                     /translation="MMKKHAFRFVALVALIVSTTFAQQPAPAVAKQSPEDRIALYQAL
                     LDLTNPWTVMCIAAHPDDEDGTSLIVMRRKYGAHTVSLFSTFGEGGQNAIGPELYEEL
                     GAIRARETMAAAEIQGSEPHFLGLKDFGFSKSADEAFRVWGHDEALRRMVLQIRKLRP
                     DVIITNHSATNNDHGHHQATARLELEAFDDAADPTKFPEQLKDGLTVWQVQRLFVRAR
                     GAAVQNPDRQGGGEQLVTIDPNEQDPIRGTTFAEQALSALQKHATQGPWPKTVAQMAS
                     RFTNSPDGRLPIIRYRLLREAKGADALTKDSHNFLDGLRLPEQVAKQLAPPTIGDRPA
                     IAFIKDRKLLFHQLLSYRTNIHNSYLDYHQQAVREAIADERKSNETSRFLLVIQRLER
                     SLALAAGIDFKVVPSIVVTPSSTATLSFTIWNRGSQSF"
     gene            complement(1414..>1609)
                     /locus_tag="VHD88_08685"
     CDS             complement(1414..>1609)
                     /locus_tag="VHD88_08685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21910.1"
                     /translation="FVIALGEYVASVIVFTPGNRPVSIAIASAMRDFNLGTAAAFGVI
                     LIAMIAIAMIVAGRLEKRTN"
BASE COUNT          337 a          435 c          464 g          373 t
ORIGIN      
        1 atgaagctct gtgacccacg gttccagatc gtgaaggaga gggtagcggt agagcttgga
       61 gtcacaacga tagagggcac gactttgaaa tcgatgcccg ccgcgagagc aagtgatcgt
      121 tcaagcctct ggatgacgag caagaagcgt gatgtctcgt tggacttgcg ttcgtccgcg
      181 atggcttcgc ggacggcttg ctggtggtag tcaaggtagc tgttatggat atttgtccgg
      241 taactcagaa gctggtggaa taataacttg cggtctttta tgaatgcgat tgctggtcga
      301 tcgccaatcg ttggcggcgc gagttgcttc gctacctgtt ccggcaatcg caatccatcc
      361 agaaaattgt gcgagtcctt agttaacgca tcggcgccct tcgcttcgcg caagagccga
      421 taacgaatta ttggcagccg tccatccggt gaattggtaa aacgcgaagc catctgcgcc
      481 actgtcttcg gccacggccc ctgcgtagcg tgtttctgca aagctgacag cgcctgctca
      541 gcgaaggtgg tgccgcgaat cggatcttgt tcgtttggat cgatggttac aagttgttcg
      601 ccccctccct gacggtcggg gttctgcacg gctgcccctc tggcgcgcac gaacagtctt
      661 tgaacttgcc aaacggtgag accgtctttc aactgttccg gaaattttgt cggatcggcg
      721 gcgtcgtcga atgcctcgag ttcgagtcgc gcggtcgcct gatgatgacc gtggtcgttg
      781 ttggtggcgg agtgattcgt aatgattacg tcaggacgaa gcttcctaat ctgcaaaacc
      841 atgcgacgca gagcttcgtc atggccccac acgcgaaatg cttcatcagc ggatttcgaa
      901 aacccgaagt ctttcaggcc gagaaagtgt ggctctgatc cctggatctc ggcagcggcc
      961 atcgtctcgc gcgcgcgaat cgcgccgagt tcttcgtaaa gctcgggccc gatcgcgttc
     1021 tgtccgccct cgccgaaagt ggaaaacaga ctgacggtgt gcgcgccgta tttgcgtcgc
     1081 atcacaatca gcgaagtgcc atcttcatca tccgggtgcg cggcgatgca catcaccgtc
     1141 cacgggttcg tcagatcgag cagcgcctga taaagcgcaa tgcgatcttc tggcgactgt
     1201 ttcgctacgg ccggcgcggg ttgttgcgcg aaggtcgtgc ttacgataag cgcgacgagg
     1261 gcgacaaatc taaaagcgtg ctttttcatc atcgtcatga agtttagctt caaagcccct
     1321 tggatgtcag gtagagacga gggctcacgc caaggcgcca aggcgcaaag agaagtcgac
     1381 aagacgcagt tttgctttgc ttctttgcgt gaatcaattc gttcgtttct ccaaacgtcc
     1441 ggcgacgatc atcgcgatcg caatcattgc aatcaagatc actccgaacg ccgctgccgt
     1501 tcccagattg aaatcgcgca tcgccgaagc gatcgcgatc gagacgggtc gattgcctgg
     1561 tgtgaacacg atgaccgacg ccacgtattc tcccagcgcg atcacgaat
//
LOCUS       DASZZE010000450         2143 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_175937, whole genome shotgun sequence.
ACCESSION   DASZZE010000450 DASZZE010000000
VERSION     DASZZE010000450.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2143
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175937"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1095
                     /locus_tag="VHD88_08690"
     CDS             <1..1095
                     /locus_tag="VHD88_08690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HVS21911.1"
                     /translation="YRGFALRPGIEGHYQREGESYVRINSDGLRDREHAKTKPANTVR
                     VAVLGDSFAEAMHVPMEQTFWSLMERKLEECNAFPGKHVEVINFGVSGYGTAQELMTL
                     RQKVWDYSPDIVILAFTTYNDVYDNSRALSKTEDVPYFVYRNSELVYDASFRDSSTYR
                     WHDSKLSKFGRWFHDHLRLVQLIHYAQFVGKLRLTDWRNRGRAVNPSAQTQTGTNEKR
                     AAPTAEEIGIDNMIYVEPQDENWKEAWRVTEGLVLQMRDEVRQKGAKFVLVTLSSAIQ
                     VYPDPLVRQNFLRHIGVNTVLYPNLRLKALAEREQIDFMDLAEPMQVYADQNHIFLHG
                     FGSDIGNGHWNANGHRAVAELMAQRLCQSK"
     gene            complement(1149..>2143)
                     /locus_tag="VHD88_08695"
     CDS             complement(1149..>2143)
                     /locus_tag="VHD88_08695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21912.1"
                     /translation="GKFNVRMRSGFLGVSDEETAPAPRTLAQQLMGALSSPFGATGVH
                     LQLTSLFANDAKAGSFMRSILHINARELTFTDEPNGWHKCVFDVLAITFGDNGVPIDQ
                     PLGRTFTIKLPDDLYKRTLRDGLVYNVTVPIKKPGAYQLRISLRDSNTERIGSASQFV
                     EVPDLKKNRLAVSGIAMSGSNPAARTTAASAPAASQAGANQPAANASSAAEGVGQGNA
                     EASPAVRHFGLGMRMDYSFVIYDAHLDKTTNLPQLTTQVRMFRDGKAVFTGKENPFTV
                     TNQADMKRLLASGAIQLGSDMAPGEYVLQVIVTDALADQKHRTATQWMDFEMVK"
BASE COUNT          491 a          590 c          600 g          462 t
ORIGIN      
        1 tatcgcggct tcgcgttgcg gcccggcatc gaaggccact accagagaga gggcgagtcg
       61 tacgttcgca tcaacagcga tggcttgcgc gatcgtgagc atgcaaagac aaagccggcc
      121 aacaccgtgc gcgtcgcggt gctcggcgac tcttttgcgg aagccatgca cgtgccgatg
      181 gagcaaactt tttggtcgtt gatggagcgc aagctggaag aatgtaacgc ctttcccgga
      241 aaacatgttg aggtgatcaa ctttggcgtt tccggttacg ggactgcgca ggaactgatg
      301 accttgcggc agaaagtttg ggactactcg ccggacattg tgatccttgc cttcacgacc
      361 tataacgacg tttacgataa ctcgcgcgcg ctgagtaaga ccgaagacgt tccctacttc
      421 gtctatcgaa acagcgagtt agtttacgac gcatcgtttc gcgattcgtc aacgtatcgg
      481 tggcacgact caaagctgag caagttcggc agatggtttc acgatcattt gcgtctggtg
      541 cagctcattc actacgccca gttcgtcggc aaattacgcc tgactgattg gcgaaaccgc
      601 ggacgcgccg tcaatccgtc cgcgcaaaca caaacaggga caaatgaaaa gagggctgcg
      661 ccgacggctg aagagatcgg aatcgataac atgatctacg tcgagcctca ggatgaaaac
      721 tggaaagaag cgtggcgggt caccgaagga ttagttcttc agatgcgtga tgaagtcaga
      781 caaaagggcg cgaaatttgt cctggtaact ctcagcagcg cgattcaggt ttatccggac
      841 ccgttagtgc gtcagaactt cctgaggcac attggcgtga acacagtgct ttatcccaac
      901 ctgcgactga aagcgctcgc cgagcgcgaa caaattgatt tcatggatct ggccgagccg
      961 atgcaagtct atgccgatca aaaccacata ttcctacacg gttttggaag cgacatcggg
     1021 aatgggcact ggaatgcgaa cggacatcgc gcggtcgccg aactaatggc gcaaaggctc
     1081 tgtcagtcga agtagttatc ttgatacgct aacggcgttc atgaatgatg ccgcgccctg
     1141 cgggacggtc acttcaccat ctcaaaatcc atccactgag tcgcggtgcg atgcttttgg
     1201 tcggcgagcg catcggtgac gatgacttgc aaaacatact cgccgggcgc catgtcacta
     1261 ccaagttgaa ttgcgccact ggcaagcagc cgtttcatgt cagcctggtt agttacagtg
     1321 aatggattct cttttccggt gaaaaccgct ttcccgtcgc gaaacattcg cacctgagtc
     1381 gtcagttgcg gcagattcgt cgtcttgtca agatgcgcgt catagatcac gaacgaatag
     1441 tccatgcgca tgccaagacc gaaatggcgc acggccggac ttgcttcggc attgccttgt
     1501 ccgacgcctt ccgctgccga gctggcattc gctgcgggct gattcgcgcc ggcttggctc
     1561 gcagcaggcg cgcttgccgc agttgtcctg gcggcaggat tcgatccgct catcgcgatt
     1621 cctgaaaccg ccagccggtt cttttttaga tccggaactt cgacaaactg gctggctgaa
     1681 ccaatgcgct cggtgttgga atcgcgcaaa gagatgcgca actgatacgc gcccggtttc
     1741 ttgattggaa cagtcacgtt gtaaaccaag ccgtcacgca gcgtccgctt gtacaaatca
     1801 tcgggcaatt taatcgtaaa agtgcggccg agcggctggt cgatcggaac gccattatcg
     1861 ccaaacgtga tcgccagcac atcgaacaca cacttgtgcc aaccgttggg ttcatccgtg
     1921 aacgttagtt cgcgcgcgtt gatgtgcagg atcgagcgca tgaacgagcc ggccttggca
     1981 tcgtttgcaa acaacgaagt caactgcaaa tggactccgg tcgcgccgaa cggcgaactc
     2041 aacgcaccca tcaactgctg cgcgagcgtg cgcggcgccg gcgcggtttc ttcgtcgctc
     2101 acaccaagaa agccgctgcg catgcggacg ttgaacttgc ccg
//
LOCUS       DASZZE010000451         2209 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_258231, whole genome shotgun sequence.
ACCESSION   DASZZE010000451 DASZZE010000000
VERSION     DASZZE010000451.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2209)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2209)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2209
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_258231"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1260)
                     /locus_tag="VHD88_08700"
     CDS             complement(<1..1260)
                     /locus_tag="VHD88_08700"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HVS21913.1"
                     /translation="MKIALLVLSGDPDRARDWLQRRYPDAGIENVPRDDLESNGPVER
                     IRRLRTLSPDVFAVSTERLAWQQGQNALLLFGSLGGARRVLLFDAHGARREETRGRVL
                     LRAPFRFAQEAWVSRKTVRCARRELTRLERALEQSGTAAALELDSDVPPRLTYLRTTP
                     AAGTQSGGATTHTSGFINAAAELGAQVSVISNDRLAGVDEAKVSMQLIEPDPLGLTRA
                     AFDLRNGMLFTDRACAQLEKRQLDFIYQRYSRFNWTGVEAALRTRRPLFLEYNGSEVW
                     MAKHWGRLSLGELLERCERLNVAAATRIFVVAEVERNNLVKAGVASDKIVVNPNGVDV
                     EEFRPGVGGAAMRRELGVADDETLSGFVGTFGPWHGVLTLAEAITLLPEDRGLSFLLV
                     GSGMFRDEVERIIRAAGKERQVIFTGHV"
     gene            complement(1267..>2209)
                     /locus_tag="VHD88_08705"
     CDS             complement(1267..>2209)
                     /locus_tag="VHD88_08705"
                     /inference="COORDINATES: protein motif:HMM:NF026018.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="polysaccharide biosynthesis C-terminal
                     domain-containing protein"
                     /protein_id="HVS21914.1"
                     /translation="TMLGLNVLLAMDRIGQMNLLDSMSPALMLLNAIIVLLILHSRLS
                     VLVTFNTAATFVLAVWMIWMIARLLNRQRDANTFRANATLFLSTMKYGLKFSIPVMAA
                     ILIFRFDLLIVNHFRGAAEAGVYAVASQVASLLLMLPGVIATLLFPRVASSRDSTGEF
                     AIQVTRHASFGMLIICVAAAMSSFVLPLIYGARFADATVQLLILLPGVYLVSIESVLV
                     QHFMGTGLPMAIPVFWLVTIAVNLGLNFALVPTLGARGAALTSTLSYALIFVFVSVYF
                     CRKTGRRPVEILLLRRQELRDLLAKMRFAASPEKVHE"
BASE COUNT          533 a          692 c          582 g          402 t
ORIGIN      
        1 aacgtggccg gtgaaaatca cctgccgctc ttttcccgcg gctcggatga tccgttccac
       61 ttcgtcgcga aacatgccgg agccaaccag cagaaagcta agaccgcgat cctcaggcaa
      121 cagcgtaatc gcttccgcca gcgtcagcac tccatgccac ggcccaaacg ttccgacaaa
      181 gccggagagt gtttcatcat cagcgacacc cagctcacgt cgcatcgcgg cgccgccaac
      241 accggggcga aactcctcga catcgactcc atttggattc accacgatct tgtcagacgc
      301 tacgccggcc tttacaagat tattccgttc gacttccgcg actacaaaga tgcgcgtcgc
      361 cgcggcgaca ttgagccgct cgcatcgctc gagcaactca cccaaactca ggcgacccca
      421 atgcttcgcc atccagactt ccgatccgtt gtattccaga aacagcggcc ggcgcgtacg
      481 caaggcggcc tcgacacccg tccaattgaa acggctgtag cgttgataaa taaaatcgag
      541 ctgccgcttt tcaagctgag cgcaggctcg atccgtaaag agcatgccat tgcgcaagtc
      601 aaaagccgcg cgcgtcaagc ccagcggatc aggctcaatt agctgcatcg ataccttcgc
      661 ttcatcgacg ccggcgagac gatcattgct gattaccgag acctgagcgc ccaactcagc
      721 cgcggcattt atgaacccgg aagtgtgcgt cgtcgcgccg ccggactgcg tacccgccgc
      781 gggagtagtt cgcagatagg tcaggcgcgg cggaacatcc gaatccaatt ctaaagccgc
      841 tgcagttccg ctttgctcaa gcgcgcgttc taatcttgtc aactcgcgac gcgcgcacct
      901 cacagtcttc cggctcaccc atgcttcctg tgcgaaccga aaaggcgcgc gcagcaacac
      961 gcggcctctg gtctcttctc gtctggcgcc gtgcgcgtca aataacaaaa ctcgacgagc
     1021 tcctcctaac gagccaaaca aaagcagagc attctgtccc tgctgccacg caagtcgctc
     1081 agtcgaaacc gcaaacacgt ccgggctcag agttcgcagc cttcggatgc gttcaaccgg
     1141 accgtttgat tccagatcgt cccgtgggac gttctcaatg ccggcatcgg gatagcgtcg
     1201 ctgcaaccag tcgcgcgcgc ggtccggatc gccgctcagg acaagcaagg ctattttcat
     1261 gcacagtcac tcgtgaactt tttcgggtga tgcggcgaaa cgcatcttcg ctaacaggtc
     1321 gcgcagttct tgtcgccgca gcaataatat ttcgaccgga cgtcgtccgg tcttccggca
     1381 aaagtagacg gacacaaaaa cgaatattaa cgcatagctc agcgtggaag tcagcgccgc
     1441 gccgcgcgcg ccaagagttg gaaccaacgc gaaatttagt cccagattaa ccgcgatggt
     1501 taccagccag aagacgggga ttgccattgg taatccggtt cccatgaaat gctggaccag
     1561 cacagactcg atcgagacga ggtagacgcc gggcaggagg atcagcagtt gcacggtcgc
     1621 gtcggcgaag cgcgcgccat aaatcagggg cagcacgaaa gacgacatgg cggccgcgac
     1681 acatattatc aacatcccga acgaagcgtg tcgcgtcacc tgaatcgcga actcgccggt
     1741 cgaatccctt gacgaagcta cccgcgggaa gagcagtgtc gcgatcacgc caggcaacat
     1801 taagagtaga ctcgcgacct gtgaagcgac ggcgtacacg ccggcttcag ccgcaccacg
     1861 aaaatgattc acgatcagca gatcgaagcg aaaaatcagg atcgcggcca tcaccggaat
     1921 cgaaaacttc aggccgtact tcatcgtgct cagaaacagc gtcgcattcg ctcggaatgt
     1981 gttcgcgtcg cgctgccggt ttaggagcct cgcaatcatc cagatcatcc aaacggccag
     2041 cacaaacgtc gccgccgtat tgaacgtgac caggacagac agccttgaat gcaggatcaa
     2101 gagcactatg atcgcgttca agagcatgag ggccggcgac attgagtcca gtaaattcat
     2161 ctggccgatt cgatccatcg ccaaaagaac gttgagcccg agcatcgtg
//
LOCUS       DASZZE010000452         2718 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_47750, whole genome shotgun sequence.
ACCESSION   DASZZE010000452 DASZZE010000000
VERSION     DASZZE010000452.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2718)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2718)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2718
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47750"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(179..1171)
                     /locus_tag="VHD88_08710"
     CDS             complement(179..1171)
                     /locus_tag="VHD88_08710"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HVS21915.1"
                     /translation="MRKVFPLLIAIFLIQTTAAQSNTPAQPSSVFQAEVKKLTPEQTA
                     ELDEATRFSAKVVELYKEQKYDEALPLAKRVVEARYRILGEYNGLTASAKINLAELYM
                     AKREYGQAENLYEQLLRVYERVFGVDHINNTIIIDSLALVNYLKRDYKKAEIFYVQSL
                     SVREKALGSEHADVAEAAYKLAEFYRSRGAYAKAEPLFLHAIQISDKVFGVEKPEAQK
                     FVQRYVCFLYESKSEQDAVHLEHKLWESRIPKSAILAGDIVNGKALSLPRPPYPEEAR
                     AIGASGVVRVQIKIDEEGKVIEANALCGHPLLAKPAEAAARRARFHPRSFMVCL"
     gene            complement(1184..1891)
                     /locus_tag="VHD88_08715"
     CDS             complement(1184..1891)
                     /locus_tag="VHD88_08715"
                     /inference="COORDINATES: protein motif:HMM:NF005594.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HVS21916.1"
                     /translation="MNLKGKNAIVTGGTKGIGRAIAEALIREGLTVCIAARKQSEIDT
                     AIRELGGPTIGFVCDVRNYEQVKALIDYTVKELGGLDILVNNAGIGIFETVEETSPED
                     FRAVLETNLFGVFYCCHEAIPEMRRRGGGYIINISSLAGANPHPRMAAYNASKFALNG
                     FSEALMQEVRHDNIKVSYIMPGSVNTEFGGDSPSNEKSWQLTPQDIARVVIDLLHHDD
                     RALPSRVEIRPSKPPKK"
     gene            complement(2045..>2718)
                     /locus_tag="VHD88_08720"
     CDS             complement(2045..>2718)
                     /locus_tag="VHD88_08720"
                     /inference="COORDINATES: protein motif:HMM:NF014674.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21917.1"
                     /translation="AAQTRPMRSKEEAHDYRYFPEPDLPPLVVTNEFIEQVSASLPEL
                     PGPRAKRFVEQYGLSFSDASQLTAERSLADYYESAVEASGGNARATANWVRSELWRAL
                     EQTGLKAEHSSVPPQELGALIRFIDEGKISGSQAKDVFSVMFTKGESASSIIERRGLV
                     QVSDTREIDRVIAEVIAANPNQLEQFRSGKEALFGFFVGQVMKASKGKANPKVVNERL
                     REILK"
BASE COUNT          572 a          754 c          690 g          702 t
ORIGIN      
        1 gtcgcatcct tttcggtgtc gtcgcgcgcg atccccagaa aaacgacgag accgtttcca
       61 atctcgccga tgatgtctcc atcgactgtt accttggcgc gcgtcacgcg ctgaacgact
      121 gctcgcatca acggccctca aaatctgatg aatctgtaaa ccagtatgcc gttaactttc
      181 acaggcacac catgaagctt cgtgggtgaa acctagcgcg acgggcagct gcttccgcag
      241 gttttgccaa caatgggtgg ccgcacaggg cgtttgcctc aatgaccttg ccctcttcgt
      301 caatcttaat ttggacacgg acgacaccgg aggctccaat ggcgcgtgct tcctcaggat
      361 acggcggtcg cggcaagctc agtgcttttc cattcacaat gtcgccagcg aggatcgcgc
      421 tcttcggaat gcgtgattcc catagtttgt gctctaagtg aaccgcgtct tgctcacttt
      481 tgctttcata tagaaaacac acgtagcgct gaacgaattt ctgcgcttca ggcttctcaa
      541 ctccgaatac cttatcgctg atttggatcg cgtgaagaaa gagcggctcg gctttcgcat
      601 aggcgccgcg gctacgataa aactcggcta acttgtacgc tgcctcagca acatccgcgt
      661 gctcggaacc cagggccttc tccctaactg acaaggattg cacgtagaat atctcagcct
      721 tcttataatc gcgcttcaga tagttaacaa gcgccaagct gtcgataatg atcgtgttgt
      781 taatatgatc tacgccaaac actctttcat agacgcgcaa tagctgttcg tagagattct
      841 ccgcctggcc gtattctctt tttgccatgt acaactcggc gagattgatc ttcgcggagg
      901 ctgtaagacc gttgtattca ccgaggattc ggtaccttgc ttcgacgacg cgcttagcca
      961 gtggcaaagc ttcatcgtat ttctgttcct tatagagctc caccaccttc gcgctaaacc
     1021 tggtagcttc gtcaagttct gccgtttgct caggcgttag cttcttgacc tcggcctgaa
     1081 agacagatga tggttgcgct ggagtgttag attgagccgc cgttgtttga atcaagaata
     1141 ttgcgatgag tagtggaaat acttttctca taaccgatgc cgtttatttc tttggcggct
     1201 tgctgggccg aatctccacg cggcttggca gcgcgcgatc gtcgtgatgc aacagatcga
     1261 tgaccacgcg cgcgatgtct tgcggcgtca attgccaact cttttcgttg ctcggcgagt
     1321 cgccgccgaa ttcagtgttc actgaaccgg gcatgatgta gctgactttg atgttgtcgt
     1381 gacgcacttc ctgcattaaa gcttcgctga aaccgttaag cgcgaacttc gaagcgttgt
     1441 acgccgccat ccgcggatgc ggattcgcgc cggcaagcga agagatgtta atgatgtagc
     1501 caccgccgcg ccgtctcatt tccggaatcg cttcgtggca gcagtagaag acgccgaata
     1561 gatttgtttc cagcaccgcg cgaaaatctt ccggcgaagt ttcttccact gtttcgaaga
     1621 tgccaatgcc tgcgttgtta accaggatgt cgaggccacc gagttcctta accgtgtaat
     1681 cgatcagggc cttcacttgt tcgtagttgc gcacgtcgca aacaaaaccg attgtcgggc
     1741 cacccagttc cctgatcgct gtgtcgatct cgctttgttt gcgcgcggcg atacaaaccg
     1801 tcaggccctc gcgaatcagc gcttcggcga tcgcgcggcc gatgcctttg gtgccgccgg
     1861 tgacgattgc gtttttgcct ttaaggttca tgtaagtaag cggcttcgcc gcctgatgtc
     1921 cgacaaactt tagtttgtcg cttcaacttg agtaaatgta agagctacga caaactgaag
     1981 tttgtcggac atctgcaatc caaagcggtg ctacacttcg cttgccatcg cactccaaag
     2041 aatttcactt cagtatctct cttagtcgct cgttcacaac cttcggattc gctttccctt
     2101 tcgaagcctt catcacctga ccgacaaaga atccgaacag cgcttctttg ccactgcgga
     2161 actgttcgag ctgattaggg ttcgcagcaa taacttcagc gattacgcga tcgatctcgc
     2221 gggtgtcgct gacctgcacc agtccgcgcc tttcgataat tgaagaagcg gattcgccct
     2281 tcgtgaacat cacggagaaa acatccttgg cttggctacc gctgattttg ccttcgtcga
     2341 tgaatcgtat cagtgcgccg agttcttgtg gaggtactga ggaatgctct gctttgagac
     2401 cggtttgttc taatgcgcgc cataactcag accgaaccca atttgctgtc gcgcgcgcat
     2461 tcccgccact ggcttcaacc gcgctttcgt aataatcggc aagcgaacgc tcggctgtca
     2521 gttgcgaagc gtcggaaaat gacaagccgt actgttcgac aaatcgctta gctcgcgggc
     2581 ccggcaattc aggcagcgac gcgctcactt gctcgatgaa ttcattcgtc acgacgagcg
     2641 gtggaagatc aggttcgggg aaatagcgat agtcgtgcgc ttcttccttc gagcgcatcg
     2701 ggcgggtctg ggcagcgc
//
LOCUS       DASZZE010000453         9393 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_64843, whole genome shotgun sequence.
ACCESSION   DASZZE010000453 DASZZE010000000
VERSION     DASZZE010000453.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9393)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9393)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9393
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64843"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..725
                     /locus_tag="VHD88_08725"
     CDS             <1..725
                     /locus_tag="VHD88_08725"
                     /inference="COORDINATES: protein motif:HMM:NF012385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HVS21918.1"
                     /translation="ERGAFTGASDRRLGKFELASGGTVFLDEIGELPLAVQGKLLRVI
                     EEKAVDRIGGRAPVPVDVRVVAATNKDLRAAVDNGEFRGDLFFRLAVFPIEIPPLRER
                     GEDVVLLAHHFAAQLGKELRGREATLSEASIAALHTHRWPGNVRELENSIERACILAD
                     GPTLEPRDLGLGSDAEREPQSFGFDISGTLGEAAERATRIVERRKIAEALAAHDGNKT
                     RAAEALGVSYKTVLTKIKDYEL"
     gene            812..2611
                     /gene="murJ"
                     /locus_tag="VHD88_08730"
     CDS             812..2611
                     /gene="murJ"
                     /locus_tag="VHD88_08730"
                     /inference="COORDINATES: protein motif:HMM:TIGR01695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0034204 - lipid translocation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HVS21919.1"
                     /translation="MNDEQKSDSEPHESSPKSEVSQDESLKSEVSSPKSHDGEDITVR
                     HNASEIAGETTAVIGESTGRFPRPEIVERGERESTGRHAFMVGAGILISRIIGVIRQR
                     VFAHYLGTSDAAGAFSAAFKIPNFLQNIFGEGALSASFIPVYAKLLAEGDKKEASRVA
                     DAVLTLLALVTSIIVLIGVLITPYIISVIAPGFSGATRELTIQLVRIFFPGAGLLVMS
                     AWCLGVLNSHRRFFLSYTAPVAWNVAIVVTLIWFGRSSNQSSLATVAAWGSVVGSGLQ
                     FGVQLPTVLLLVRRLRPVFDVLSANVREVIRNFFPVFMSRGVVQISAFVDSMLASLIS
                     PQAVASLTYAQSLYTLPVSLFGMSVSAAELPAMASALGTSDEVAVQLRQRLDEGLRRI
                     AFFIVPSAMAMLALGDVMTAVLYQTGEFKHDATRYVWGILAGSTIGLLASTLGRLYAS
                     TYYALHDTRTPLRFAVIRVVLTTGLGYLCAIPLPPAIGIDPKWGAAGLTASAGVAGWI
                     EFALLRRTLNRRIGRTGLSFGYVTKLWVSAASGAGVGWAIKLAIGQRHPVIVAALVLV
                     PYGLTYFGISSALGLPEANAVVGRALRIVGIRK"
     gene            complement(2729..2968)
                     /locus_tag="VHD88_08735"
     CDS             complement(2729..2968)
                     /locus_tag="VHD88_08735"
                     /inference="COORDINATES: protein motif:HMM:NF014950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HVS21920.1"
                     /translation="MPAIPVPTKTALGDTIGPSLTVPLQNVTLAEALSEVESRMISEA
                     LHKHKGNISRVARELGLTRRGLYLKIERYEIKVSA"
     gene            3425..5143
                     /locus_tag="VHD88_08740"
     CDS             3425..5143
                     /locus_tag="VHD88_08740"
                     /inference="COORDINATES: protein motif:HMM:TIGR00196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052855 - ADP-dependent NAD(P)H-hydrate
                     dehydratase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HVS21921.1"
                     /translation="MQAVISAAQMREIDRVTTERFGIPSLTLMEAAATAVARAVIECL
                     SGDVIGKAVLVLCGRGNNGGDGATAARLLALAGAHVEVVLFGKVEDTQGDARANFDVI
                     RRLRNGAKFAEGGQPEVLGLSLFANGPGLAAFSECNSEKEWHDLLYHELQQPHDAIVD
                     ALFGTGLTRPVAGVHREAVKFLNRLRDMRDLSQPWHAPIVSIDIPSGLNSDSAEPIGE
                     AVHADVTITMTAPKPANVLPPAASYNGELIVADIGSPVELIDAVESKLFVAEESDARR
                     WLIQTRYTPDSYKTTHGHALVIAGSRGFTGAAALCGNAAMRAGAGLVTVATPASSQPL
                     VATQVMPEVMTAALAETDRGAVSDEAIDYVLKFAERANAIAIGPGLSFEDERTRHFVR
                     ALVERRKTPIVIDADALNCLAPWPPELRGSPEHPIVLTPHPGEMLRLMGTDDKRALND
                     RVAAARAFATEHEVIVVLKGTRSLIAVPDSRVFINPTGNAGLGTAGAGDTLTGIIAGF
                     LAQAYGTLEQDADALSTVIAALYISGLAGDLAASELGMRTLVASDIREHLSAAIRSLD
                     PEGEMP"
     gene            5224..5685
                     /gene="tsaE"
                     /locus_tag="VHD88_08745"
     CDS             5224..5685
                     /gene="tsaE"
                     /locus_tag="VHD88_08745"
                     /inference="COORDINATES: protein motif:HMM:NF014426.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HVS21922.1"
                     /translation="MPTIAQSVPTGDYVSHNERATFDLGVRIGAQLSGGEILLLSGPL
                     GTGKTMLVKGIAHALDIDEENVTSPSFTLVNPHPGRLLLYHIDLYRLDQGASAAHAVD
                     LDEILTDEKAVVIIEWAERLGRYPLPDDIWRISIAGDGDEPRKISIGSAAS"
     gene            5751..6191
                     /locus_tag="VHD88_08750"
     CDS             5751..6191
                     /locus_tag="VHD88_08750"
                     /inference="COORDINATES: protein motif:HMM:TIGR04191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrxA/BrxB family bacilliredoxin"
                     /protein_id="HVS21923.1"
                     /translation="MPYPEFLIAPMREDLTRLGVEELRTPEAVDEAVQNSKGTVMIVV
                     NSVCGCAAGKARPGVALALQNEVRPDKVATVFAGADIEATDRARSYFTGYPPSSPSIG
                     LLKDGQLVYMMERHQIEGRGPTEIADELKRAFEQCCATASVATS"
     gene            6468..8714
                     /gene="recG"
                     /locus_tag="VHD88_08755"
     CDS             6468..8714
                     /gene="recG"
                     /locus_tag="VHD88_08755"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:NF008165.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HVS21924.1"
                     /translation="MSANLPVSLDSRILDLPAAGIPRFGPQSARKLALALTEVSPGKD
                     IDSVNVADLLSYLPTRYEDRSSMAQIRDLKDGMEASLDLTVRIAGGFQVRNRRSFKQR
                     LYIFEISATDQQRSGRPVVVWEFVSGARAQQIIAYYSKRFTPGTRFVAFGKWEWDKRR
                     GTYALRLNRPDEVEIINAADDEESAGETDPTLTAIHVGRRVPIYRKLGDFRSKRLREI
                     VHETLARLPDKAIEETLPRDLLARRKLIARGDALRKVHFPTDETPLSDYELMRSPAHK
                     RLIFEEFFWVALGLGLKRGERTKERKGAAIKTDPQMLRRIASVLPFKLTNAQKQVVKE
                     ILNDMRSAAPMNRLLQGDVGSGKTIVALIAMMVAMENGYQTALMAPTEILAEQHARNI
                     KRILAKSPYRVEQLIGSLRTGDKKQRHHAIAEGEIHACIGTQALIQESVTFKNLSLIV
                     IDEQHRFGVMQRAELRARGLNPDVLVMTATPIPRSLAMTVYGDLDVSIIDEMPPGRTP
                     IKTQVFGEDGRQEVKKLIAREVRAGRQVYVVYPLVEESEKMDLRDATKRYEYLRDRVF
                     PKFTVGLLHGRMKPEEKDDVMGQFVAGEIQILVSTTVIEVGVDVPNASVMVVEHAERF
                     GLSQLHQLRGRVGRGAEQSYCVLLASDEQTEVARERLGIMEETNDGFRIAEKDLEIRG
                     PGEIMGTRQAGLPEFRVANLVRDLDILQAARKEAEFYINQGKSSPDAAKLIKRAQSDA
                     RMRLAAVG"
     gene            8835..>9393
                     /gene="rsmD"
                     /locus_tag="VHD88_08760"
     CDS             8835..>9393
                     /gene="rsmD"
                     /locus_tag="VHD88_08760"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: protein motif:HMM:TIGR00095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052913 - 16S rRNA
                     (guanine(966)-N(2))-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HVS21925.1"
                     /translation="MRIIAGKYRGRKVNSPPSLQTRPTSDRLRETLFTIIAPRIEGAR
                     FLDLCAGSGAVGIEALSRGAAHVTFVDRSRKMGGLIEANLEALEVLEDEFEIVCGEAA
                     EFLRRRAKKEAEPFHIVFYDPPYATVYKVVLDYVGTHTTQLLADEGLMIVEHHRKNDL
                     EDEFGSLVRYRTLKQGDSCLSFYAPT"
BASE COUNT         1980 a         2568 c         2785 g         2060 t
ORIGIN      
        1 acgagcgcgg cgcgttcacc ggagcaagcg atcgacggct cggcaagttc gaattggctt
       61 ccggcggcac tgtgtttctc gacgagatcg gcgagttgcc gctcgcggtg caaggcaaac
      121 ttttgcgcgt catcgaggag aaagccgtgg atcgcatcgg cggtcgcgcg ccggtgccgg
      181 ttgacgtgcg cgtcgtcgcc gcgacgaata aagacctgcg cgcggctgtg gacaacggtg
      241 agtttcgcgg cgatcttttt ttccgactcg cggtttttcc gatcgagatt ccacctctgc
      301 gcgagcgcgg cgaagacgtt gtcttgctcg cgcaccattt tgccgcgcaa ctcggaaaag
      361 aactgcgcgg acgtgaagcg acgctcagcg aggcgagtat tgcggcgctt catactcatc
      421 ggtggccggg caacgtgcgc gaactggaaa actcgatcga acgagcgtgc attttggcgg
      481 atggcccgac acttgaacca cgtgacctgg ggttgggcag tgacgcggag cgcgagccgc
      541 agtcattcgg cttcgacatt tcggggacgc tgggcgaggc agccgaacga gccacacgaa
      601 tagtcgagcg gcgcaagatt gcagaggcgc tcgccgcgca cgatggcaac aagactcgcg
      661 cggccgaagc gttgggcgtg agttacaaga cggtcttgac caagattaag gactacgagc
      721 tatagctagc ggttgagagt tcaagcttta gcttgcgcct gtcaaacagc aacctgaagg
      781 ttgaactctc aactaaccga acctttcaga aatgaacgac gagcagaagt cagattccga
      841 gcctcacgaa tcgagtccca agtctgaagt ctcacaagac gaaagtctca agtctgaagt
      901 ctcaagtccc aagtctcacg acggcgaaga catcactgtc cgccacaacg cctctgaaat
      961 tgccggtgaa acgaccgccg taatcggcga aagcaccgga cgctttccgc gcccggagat
     1021 cgtcgaacgc ggagagcgcg agagcaccgg cagacatgcg ttcatggtcg gcgccggaat
     1081 cctcatcagt cgcatcatcg gcgtaatccg acaacgcgtc ttcgcacatt acttgggcac
     1141 gtcagacgcc gccggcgcct tcagcgccgc tttcaagatt ccgaattttc tccagaacat
     1201 ttttggcgaa ggagcgctct cggcttcgtt cattccggtc tatgcaaagc ttttggccga
     1261 aggcgataag aaagaagctt cgcgcgttgc cgacgccgtg ctcacgctat tagcactcgt
     1321 cacttcgata atcgttctca ttggcgtgct gatcacgcct tacatcatca gcgtgatcgc
     1381 gccgggcttt agcggagcga cgcgcgagct gacaattcaa ctggtgagga tctttttccc
     1441 cggcgccggc ctgctcgtca tgtcggcctg gtgcctcgga gtgctcaaca gtcatcgtcg
     1501 attctttctt tcttacaccg cgcccgttgc gtggaacgtc gcgattgtcg taacgctgat
     1561 ttggtttgga cgcagctcaa accaatcgtc gctggcaacg gtcgcggcgt ggggttcggt
     1621 agttggcagc gggctgcaat tcggcgttca gcttcccacc gtgctgctac tcgtcaggcg
     1681 attgcggccg gtctttgacg ttttgagcgc gaacgtccgc gaagtgatca gaaacttctt
     1741 tccggttttc atgagtcgcg gcgtggtgca gattagcgct ttcgtcgact ccatgcttgc
     1801 cagtctgatc agtccgcaag ccgtcgcttc gctcacgtat gcgcaaagtc tttacacgtt
     1861 gccggtgagc ctgtttggaa tgtccgtgtc agcggctgaa ctccccgcga tggccagcgc
     1921 gctgggcacg agcgacgaag tcgcggtcca attgcggcaa cgcctcgatg aagggctgcg
     1981 ccgcattgct tttttcatcg tgccgtcggc aatggcgatg cttgctctcg gcgacgtgat
     2041 gacggcggtc ctttaccaaa ccggcgagtt caaacacgat gcgacccgtt acgtctgggg
     2101 cattctcgcg ggctcgacga tcggattgct ggcttcgacg ctcggtcgtc tttacgcttc
     2161 gacttactat gcgctgcacg acacgcgcac gccgcttcgc ttcgcagtta tacgagtggt
     2221 actcacaacc ggcctgggct atctgtgcgc gattcctttg ccgccggcga ttggtatcga
     2281 tccaaagtgg ggcgcggcag gcttgaccgc gtcggcaggg gtagctggct ggatcgaatt
     2341 cgctttgctg cgacggacgc tgaaccggcg gatcggacgc acgggtttgt catttggtta
     2401 tgtgacgaag ctttgggtct cggctgcgag cggcgcgggt gtgggctggg ccatcaagct
     2461 agcaattggc cagcgtcatc ccgtaatcgt cgcggcgctg gtcctggtgc cgtatggttt
     2521 gacttacttt ggcatctcgt ccgctctggg attgccggag gcgaatgcgg tcgtcggacg
     2581 cgcgctgaga atcgttggta tcagaaaatg agtggcacag actctctgtc tgtgaagctc
     2641 tgagggagaa taataactca agatttcgat ccgaactgca tgttgtaatc cgatacaaac
     2701 gaggctagcg gaaacacact ctcaaacctc aggcgctaac cttgatttcg tagcgttcaa
     2761 tcttgaggta gaggcctcga cgcgtgaggc cgagttcgcg cgcgacgcgt gaaatgttgc
     2821 ctttgtgttt gtgcaacgcc tcactgatca tgcggctctc aacctccgaa agcgcctcgg
     2881 cgagagtgac gttctgcagc ggcaccgtca acgaagggcc gatcgtgtcg cccagcgcag
     2941 ttttagtcgg aactgggata gctggcatcg ccacccaatc gcgtcctgat tctttttcct
     3001 ctggtcattt tgtttttccg cactgtttcc ttttcctgaa cggttgtgcc agagtcgaaa
     3061 tcgctgagtt cggcctgttt ttgcagattt tggcggtcgg ttacgaacat cagattgaaa
     3121 ggcttcggtc agactgacta gtgatcacgg gagggaacgt gataagagaa ccgctaaact
     3181 ttcgtggcgg tttcacagcg ccggggtggg cttggaaatt tctggagaat ccaaggcatt
     3241 ggatctttag ttgagtatcc cgaaaagacg gataggttgg agcagcggca aggcggcggg
     3301 gaaaacccgg gccggttttt ttgtttggga cgcagccatc ctcgctgcgg gccgccgaca
     3361 tcctcgtcgg ctttttttcg cggctcaatt gacccacccg taaccttctt cttatcatcg
     3421 acacgtgcaa gctgttattt ctgccgcgca gatgcgcgag attgatcgcg tgaccaccga
     3481 gcgcttcggc attccgtcgc ttaccctaat ggaagctgcc gcgactgcgg tcgcgcgtgc
     3541 ggtcatcgag tgcttatccg gcgacgtgat aggaaaagcc gttctggttc tttgcggacg
     3601 aggaaacaac ggcggagacg gcgcgaccgc cgcgagactg cttgctcttg ccggggcgca
     3661 tgtcgaggtt gtgctcttcg gcaaagttga agatacgcaa ggtgacgccc gagcaaattt
     3721 tgatgttatt cgtcgccttc gcaacggagc aaagttcgct gagggtggcc agccggaagt
     3781 tctcggcctg agcttgttcg caaatggtcc gggcttggcc gcattctctg aatgtaattc
     3841 ggaaaaggaa tggcacgatc tgctttatca cgaactgcag caaccccacg acgcgatcgt
     3901 tgatgcgttg ttcggtaccg gactcacccg gcctgttgct ggcgttcaca gagaggcagt
     3961 gaagtttctg aatagacttc gggacatgcg ggatttgagt cagccttggc atgcgccaat
     4021 cgtatcgatc gacattcctt ccgggctcaa ttccgattct gccgagccga tcggcgaagc
     4081 tgtccacgcg gacgttacga tcaccatgac cgcgccgaag cccgcgaatg ttttgccgcc
     4141 cgccgcgagt tacaacggcg agttgatcgt cgcggacatt ggctcgccgg ttgaactaat
     4201 cgatgccgtc gaatccaaac tttttgtcgc tgaagaatcc gacgcgcgcc gctggctgat
     4261 tcaaactcga tacactcccg attcttacaa gacgacgcat ggtcacgcgt tggtgatcgc
     4321 cggctcgcgc ggatttaccg gagcggcagc gctgtgcggt aacgctgcga tgcgcgccgg
     4381 cgcgggactg gtgaccgtcg caactcccgc ctcgtcacaa cctttggtgg caacgcaagt
     4441 gatgcccgaa gtgatgaccg ccgcgctggc cgaaaccgat cgcggcgcag tgagcgacga
     4501 agcaattgat tacgttctga aattcgctga gcgcgcgaac gcaatcgcga tcgggcccgg
     4561 tctgtcattt gaagatgagc gcacgcgcca ttttgtgcgc gctctcgttg agcgccgcaa
     4621 gactccgatc gtgatcgacg cggatgcatt gaactgctta gcgccatggc cgcccgagtt
     4681 gcgcggctcg ccagaacatc cgatcgttct gacgccacat ccgggcgaga tgctgcggct
     4741 gatgggcacc gacgataaac gcgccctcaa tgatcgcgtt gcggccgcgc gcgcgtttgc
     4801 cactgaacat gaagtaatag ttgtcttgaa aggcacgcga tcgctgatcg ctgtgcccga
     4861 tagccgcgtg tttataaatc caacgggaaa cgcgggcctg ggtaccgcgg gagctggcga
     4921 cactttgacg ggaatcatcg cggggtttct ggcgcaggcg tacggaactt tggagcaaga
     4981 cgccgacgcg ttgtccacgg taatcgcggc gctctacatc agcggcctgg ctggcgatct
     5041 tgccgcaagc gaactcggca tgcgaacact ggtggcgtcg gacattcgcg agcatctcag
     5101 cgcggcaatt cgttcgctcg atcctgaagg agaaatgcca taaggcatat cttcgccgtc
     5161 tagacgcggc acttgtgccg cctgacgttg ggacaagtcc caactccaaa ctgaatcaac
     5221 ttcatgccaa caattgcaca atccgttccc accggcgact acgtctcgca caacgagcgc
     5281 gcaaccttcg atctcggcgt acggatcggc gcgcagcttt caggcggcga gatccttttg
     5341 ttgagcggtc cgctgggcac cggcaaaacg atgctggtaa agggaatcgc gcacgcgctg
     5401 gacatagatg aagagaacgt aaccagccca tcgtttacgc tagtcaatcc gcatcctgga
     5461 cgattgttgc tctatcacat cgatctctat cgtttggatc aaggcgcgtc agccgcgcat
     5521 gcggtcgatc tcgacgagat ccttactgat gaaaaagccg tcgtaatcat cgaatgggct
     5581 gagcgtttgg gacgctatcc tttgccagac gacatctggc ggatctcgat tgccggtgat
     5641 ggcgacgaac cgcgaaagat ctcgatcggg tcggcagcca gttgagcgga cgtggtacaa
     5701 tcgccccaca aacaagtttg gagcagatat ttgaaggaga aattaaagat atgccgtacc
     5761 cagagttttt gattgcacca atgcgtgaag acttgacgcg tctcggggtt gaggaattga
     5821 gaacacccga ggcagtagac gaagcagtcc agaattcaaa aggcaccgta atgattgtcg
     5881 tgaattcggt ctgcggttgc gccgcaggca aagcgcgtcc aggcgtcgcg ttggctctgc
     5941 agaatgaagt gcgtcccgac aaagtcgcga ccgtgtttgc gggcgctgac atcgaggcga
     6001 ccgacagagc gcgcagctat tttactggct atcctccatc gtcaccttca atcgggcttt
     6061 tgaaagacgg ccaactcgtt tacatgatgg agcgccatca gattgaaggc agaggaccca
     6121 ctgaaatcgc cgacgaattg aagcgcgctt ttgagcagtg ctgcgcgaca gcaagtgtag
     6181 cgacgagtta gtcgttgatc ctttattcac cttcactacc ttcgcggatt cgctcgatct
     6241 ctcggtcggc atcgatcctt gtccgctgaa aaggccgccc ccggaatttt caaattccag
     6301 gcagcgattc gacgattgag ttggatcgtt tgctgtttga atgaacccag ggccttttca
     6361 acgcgcgtta gctctagaag aaggtacaaa ccgccggtta agttccatga ctggtcggca
     6421 cggccgcgcg gaaaacacaa cacatcgctt gtgataaaat cgcggcgatg tctgctaacc
     6481 ttccggtttc cctcgacagt cggattctcg atctgcccgc ggctggcatt cctcgctttg
     6541 ggccgcaaag tgcgcgcaaa ctcgcgctcg ccctgactga agtttcacct ggaaaggaca
     6601 tcgacagcgt caacgttgcc gacctgctca gctatctgcc cacgcgctac gaagatcgat
     6661 cgagcatggc gcaaattcgc gatctcaaag atggcatgga agcgtcgctc gatctcactg
     6721 tgcgcatcgc cggcggtttt caagtgcgga atcgtcgctc gtttaagcaa cggctctaca
     6781 tttttgaaat tagcgcaacc gatcagcagc gctcaggtcg gccagttgtt gtttgggagt
     6841 ttgtttccgg cgcgcgcgca cagcaaatca tcgcctacta ttcgaaacga ttcactccgg
     6901 gcacgcgctt cgtcgcgttc ggaaaatggg agtgggacaa gcggcgcggc acctacgctc
     6961 tgagactgaa ccgacccgat gaggtggaaa ttatcaatgc ggcggacgac gaagaaagcg
     7021 caggcgaaac tgatccgacc ctgaccgcga tccatgtcgg tcgtcgcgtt ccaatctatc
     7081 gcaagctggg cgactttcga tcgaagcgat tgcgcgagat cgtacacgaa actctggcgc
     7141 gactgcccga caaggcaatc gaagaaacct taccgcgcga cttgctcgcg cgtcgcaagc
     7201 tgattgcgcg cggcgatgcg ctgcgcaaag tgcattttcc cacggacgaa actccgctct
     7261 cagattacga attgatgcgt agtcccgcgc acaaacgact aatcttcgaa gagttctttt
     7321 gggtggcgct gggcctcggg ctgaagcgag gtgaaagaac gaaggagcgc aaaggcgcgg
     7381 cgattaagac ggacccacag atgttgcggc gcattgcttc agtgcttcca ttcaagctga
     7441 caaatgcgca gaagcaagtt gtcaaagaga tactcaacga catgcgttcc gctgcgccga
     7501 tgaatcgtct gctgcaaggc gacgtaggca gcggcaagac gatcgtcgcg ctgatcgcaa
     7561 tgatggtcgc gatggagaat ggttatcaaa ccgcgctgat ggcgcccact gaaatcctcg
     7621 ccgagcagca cgcgcgcaac atcaaacgaa ttctcgcgaa gtctccttat cgcgtagagc
     7681 agttgatcgg ttcattacga actggcgata aaaagcaacg gcatcacgcg atagctgagg
     7741 gagagattca cgcctgcatc ggtactcagg cgctgattca ggaaagcgtc acgttcaaga
     7801 atctcagcct gattgttatc gacgagcagc atcgcttcgg tgtaatgcag cgcgctgagt
     7861 tgcgtgcgcg cggactgaat cccgatgtgc tggtgatgac ggcgacgccg attcctcgct
     7921 cactggcgat gaccgtgtac ggcgatctcg atgtctcgat catcgatgag atgccgcctg
     7981 gtcggacacc aatcaagacg caggtgttcg gcgaagacgg acggcaggaa gtgaagaagt
     8041 tgatcgcgcg tgaagtgcgc gccggccgtc aggtttacgt tgtctatccg ctggtcgaag
     8101 agtcggagaa gatggatttg cgcgatgcta ccaagcggta tgaatacctc cgcgaccgcg
     8161 tgtttccaaa gttcactgtc gggctgttgc acggccgcat gaagcctgaa gaaaaagacg
     8221 acgtgatggg gcaattcgtc gctggcgaga ttcagattct ggtttcgact acggtgatcg
     8281 aagttggcgt cgatgtgccg aacgcttcgg tgatggtcgt cgagcacgcc gagcgctttg
     8341 gtctatcgca gcttcatcaa ctgcgtggac gcgtcggtcg cggcgcggaa cagagttact
     8401 gtgtgctgct ggcttccgac gagcaaaccg aggtcgcgcg cgagcggctc ggcatcatgg
     8461 aagaaaccaa cgacggcttt cgtatcgcgg agaaggacct tgaaattcgc gggccgggag
     8521 aaatcatggg tacgcggcaa gccggcctgc ccgagttccg ggtcgctaac cttgttcgcg
     8581 acctggatat cctgcaagca gctcgcaaag aagccgagtt ctacatcaac cagggcaagt
     8641 cgtcgcccga tgccgcaaag ctgataaagc gagcgcagag tgatgcgcga atgagactcg
     8701 cggcagttgg ctaaaaccta tccacagatt acacagattt cgcagatgga aatccgaaca
     8761 cgtgcacgcg actgtgggtc ggtgtccttt cgtctgtgta atctgtgcaa tctgcggatc
     8821 gatcttgata tacgatgaga atcattgccg gcaaatatcg cggacgcaag gtaaacagcc
     8881 cgccgtcact acagacgcgg ccgacttccg atcgtttgcg cgagacgcta ttcaccatca
     8941 ttgcgccgcg aatcgaaggc gcgcggtttc ttgatctctg tgctggttca ggtgccgtcg
     9001 ggatcgaagc gctttcgcgc ggcgcagcgc acgtaacttt cgtggatcgt tcacgcaaga
     9061 tgggtggatt gatcgaagca aatcttgaag cgcttgaggt tcttgaagat gagttcgaga
     9121 ttgtctgcgg cgaagcggcg gaatttttgc gacggcgggc taagaaagaa gcagagccat
     9181 tccatattgt cttttacgat cctccgtacg caactgttta taaagttgtg ttggattatg
     9241 tcggcacaca cacgacgcaa ttgttggccg acgaaggatt gatgattgtt gagcatcatc
     9301 gcaagaacga tctggaagat gagtttggtt cgctggttcg ctatcgcact ctcaaacaag
     9361 gtgattcgtg tctcagtttt tatgcaccga cag
//
LOCUS       DASZZE010000454         5656 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_146244, whole genome shotgun sequence.
ACCESSION   DASZZE010000454 DASZZE010000000
VERSION     DASZZE010000454.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5656)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5656)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5656
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146244"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            310..969
                     /locus_tag="VHD88_08765"
     CDS             310..969
                     /locus_tag="VHD88_08765"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HVS21926.1"
                     /translation="MSYGEQIALRGHAGLEEAAAATSVEVRSTGDAQFLERLRRGDAA
                     AFERLVAERTGDVYALLCRLTADAEEARDLTQETFLRAFQSISRFRGDADLKTWLYRI
                     AVNQARNRWRWWRRRRRDVTVSLDDTNGQREQPLGANLRNDDAIDPERETLAHERESQ
                     LREALLGLRQSYREAVILRDVEGFSYEEIAATLQISIGTVKSRLSRGRLELRGKLEGS
                     F"
     gene            1312..2121
                     /locus_tag="VHD88_08770"
     CDS             1312..2121
                     /locus_tag="VHD88_08770"
                     /inference="COORDINATES: protein motif:HMM:NF024881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HVS21927.1"
                     /translation="MSCEEIQESLSLYYDDGLMPEARASCYRHLEVCPVCRARLLELR
                     SIRRSLAVLSRPTPPADLIPSINKALVAEASAQRARRNTTIGDVISEWLQPRVMRYAF
                     SSVASILLFASVFAALRPHMIALREAGLAFDAALVANEPVDPLSVRYDINKPISPESY
                     AALRTPFNAVSPSLNPGGALATLTWSPAHLHDNGNQSADNMVVVADVFTNGSASVADV
                     MQAPRDRRMLADFQKALRESAAFVPAALDRRPETMRVVFSIQRVDVHDRSF"
     gene            complement(2217..2789)
                     /locus_tag="VHD88_08775"
     CDS             complement(2217..2789)
                     /locus_tag="VHD88_08775"
                     /inference="COORDINATES: protein motif:HMM:NF014038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class IV adenylate cyclase"
                     /protein_id="HVS21928.1"
                     /translation="MPIEIEKKYRLAKGLQQAIEKRLRDLGASSRPVEFEENTLYRGG
                     RLDFGGCALRLRRVGDRAILTFKQRIPTDSAIKHQREEESVVADADAVSTILISLGFQ
                     PALVYEKRRTRWKLGKAVVVIDELPFGLFMEIEASEKEIARVEKMIGAERLPAVMETY
                     PMLTVKLGKKRKGIIEARFKKMRRRKALLK"
     gene            complement(2828..4183)
                     /locus_tag="VHD88_08780"
     CDS             complement(2828..4183)
                     /locus_tag="VHD88_08780"
                     /inference="COORDINATES: protein motif:HMM:NF024110.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HVS21929.1"
                     /translation="MRKFFAVVKREYIQRVRTKFFVIMTILAPALMAGFTVVPALMFS
                     IKAGGPTRLAIVDQTGKMYERVARAIGTDEDLGSDESQQQSSSPPAAVNANPKERVDE
                     AEKLIHGSFQVEEVHLAGRSMDDVTNDLETRVRSKTLDGYLILPANLLKDGQPEFHAR
                     NTADPFTKGHVEVSVNRAVRSERLVEANIDEKLIRKMSEPVKLRTFNAGGKGGESKGE
                     ANFYLVFGLSLMIYMSVLLYGQLVLGAVIEEKETRIAEILFSSMRSFPLMIGKLIGVS
                     LVALTQLSIWGLAFATFTAVGIPVLASRGVPISLHVPPMVFVYFVIYFLLGFFIYASI
                     YAVVGSMVTTTQEGGQLAFPVVLMLIAGFYLSFSIIRSPNSSLAFWASMFPFFAPITM
                     LVRIVTETPPFWQIALSLGIGFATVVGLIWLTSRIYRVGMLMTGKKASIPEVWRWLRQ
                     A"
     gene            complement(4180..5097)
                     /locus_tag="VHD88_08785"
     CDS             complement(4180..5097)
                     /locus_tag="VHD88_08785"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HVS21930.1"
                     /translation="MEEEAKPTLVLEHVTKSFGEFTAVSDLSLQVRPGRVFGLIGPNG
                     AGKTTTIRMIVNITVPDSGRIELLGQQMNTALQDRIGYLPEERGLYKRMKVGEQLRFF
                     AELKDLRGPEAEKRIDSWLSRLELSAWKEKRSKELSKGMQQKIQFITAVIHDPDLVIL
                     DEPFSGLDPVNVELMKDTILAQKAAGKTIILSTHQMEIAEKLCDDVCMINKSHKVLDG
                     KLREIRRSFSRNAVALQFDGGDGVLNDPALVANIRENGEDTEVLLTPDANPQVLLRRL
                     VELGAVVRKFELVEPSLHDIFIEKVREFA"
     gene            complement(5133..5435)
                     /locus_tag="VHD88_08790"
     CDS             complement(5133..5435)
                     /locus_tag="VHD88_08790"
                     /inference="COORDINATES: protein motif:HMM:NF012911.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HVS21931.1"
                     /translation="MSASSEIMAGKIARKFFISGDVQGVGYRFFAQRAAARHQVVGYV
                     KNLDDGRVEAFAEGPAHDVESFKHDLAAGPRFGFVKHIEEINTDPVGSYSSFRIEH"
     gene            complement(5437..>5656)
                     /locus_tag="VHD88_08795"
     CDS             complement(5437..>5656)
                     /locus_tag="VHD88_08795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21932.1"
                     /translation="TLFNDNGVFKPQQGMAQVDRSAIASAKISLRGESIANARDWLTE
                     QSLPISNGVAKVTLAAGGIAVVELTTAR"
BASE COUNT         1241 a         1591 c         1560 g         1264 t
ORIGIN      
        1 cgggcgcgct tctttttgta cttggccaac tgtcttccat tcgcaagaac gcacggtcaa
       61 agccgttcat tttggtgtat gatcgcggaa acagcgaatt tagcgacggg cttaggcgtt
      121 gtcaaggagg tttggcgatc acaactcgga aagacggctc gatcatcaaa tagtcggcga
      181 gcagaaagcg ccaaccttgg aaatgattct ttgggaacaa atcacgagca tcggatgtct
      241 aaccgagcgt ctgtccggga agcgatcgtg ctcgtctggt ttcaagcttc ccgcccatga
      301 gggtgccgaa tgagctacgg agagcaaatc gccctccgcg ggcatgcggg cttggaagaa
      361 gccgccgcgg cgacttctgt tgaggtccgc tcgacaggcg acgcacagtt ccttgaaaga
      421 ttgcggcgcg gagatgcagc agcgttcgaa cgtctggtgg ccgagcgtac cggcgatgtt
      481 tacgcgttgc tttgtcgctt gacggccgac gctgaagaag cgcgtgacct gacgcaggaa
      541 actttcctcc gcgcctttca gagtatcagc cggtttcgcg gcgacgcgga tttgaaaacc
      601 tggctgtatc ggatcgcggt taatcaggcg cggaatcgct ggcgctggtg gcggcgcaga
      661 agacgcgatg tcacggtttc gctcgacgac acgaacggcc agcgagagca accgcttggc
      721 gccaacttgc gaaacgacga tgcaatcgat ccggagcgag agacgctggc tcacgaacgc
      781 gaaagccaac tgcgcgaggc tttgttggga ctgcggcagt cataccgcga agccgtgatc
      841 ctgcgcgacg tggaaggatt cagctatgaa gagatcgcgg caacgcttca gatcagtatc
      901 ggaacggtta agtcgcgatt gtcgcgaggc aggttagagt tgcgaggcaa actcgaaggt
      961 tctttctaaa ttgtaagcga atggttggcc cgccccggct tcacaaaaac tcggtgccaa
     1021 ttgggtcgaa gtgacggctt ggggaacggg cgcaagacga ttcagccagt gagcggaacg
     1081 aatttgaaaa cgtggccagc aacaacgcgt agctttcgct ctgccattga acgaaccgtt
     1141 aggcgcgaag aacttccgag tcggcgttgc tttccgaacg gaaagcagcc ggggtcggcc
     1201 agccattcgg tgagattttt gatttcagat tttggatttg cgattgccag tttgagacga
     1261 ggatgaaaat gctccaatca aaaatcagca atcacaaatc ggaaatgttt tatgtcgtgt
     1321 gaagaaattc aagaatcgct ttcgctttat tacgatgacg gcttgatgcc ggaagcgcga
     1381 gcgagttgtt atcgtcactt ggaggtgtgt ccggtttgtc gggcgcgctt gctggaattg
     1441 cgatccatcc ggcgcagtct ggcggtgctg tctcgaccga cgccgcccgc cgatctgatt
     1501 ccttcgatca ataaggcatt agttgccgaa gcctccgcgc aacgtgctcg ccgcaacacg
     1561 accatcggcg acgtgatttc cgaatggctg caaccgcgcg tcatgcgcta tgccttcagt
     1621 tccgtcgcct cgatcctgct tttcgccagc gtgttcgctg cgctgcggcc gcacatgatt
     1681 gcgttgcgcg aagctgggct cgctttcgat gcggcgttag ttgcgaatga acctgtcgat
     1741 cctctaagcg tcaggtacga tatcaacaag ccgatttctc cagagagtta tgcggcgctg
     1801 cgcacgccgt tcaatgccgt gtcgcccagc ctgaaccccg gtggcgcgct ggcaacgctg
     1861 acctggtcgc cggcgcattt gcacgacaac ggaaatcaga gcgcggacaa catggttgtg
     1921 gtggctgatg tgttcacgaa tggctctgct tcagttgcgg acgtaatgca ggcgccgcgc
     1981 gatcgtcgta tgctcgcgga ttttcagaag gcgctgcgcg agagtgcagc gtttgtgccg
     2041 gccgcactcg atcgccggcc ggaaactatg cgcgtggtgt tttcaattca gagagttgac
     2101 gtacacgatc gcagcttctg aaagttaagt ctccagttta gaaggcggac ttgtccgccc
     2161 aattcgaggt tagttcaagc tgtcttcgaa cggacaggtc cgtcctctaa acgaggtcat
     2221 ttcaacaaag ctttacgccg gcgcattttc ttgaaacgcg cttcgatgat tccttttcgt
     2281 ttcttaccca gcttcaccgt cagcatcgga taagtctcca tcacggcggg cagacgctca
     2341 gcgccgatca ttttctcaac ccgcgcgatc tctttctcgg aagcttcgat ttccatgaac
     2401 agtccgaacg gcaattcgtc aatcacgact acggctttgc cgagtttcca gcgcgtgcga
     2461 cgcttttcgt aaaccagagc gggttgaaac ccgagtgaga tcagaatcgt gctaacggcg
     2521 tcggcatcag ccaccacgct ctcttcttca cgctgatgtt tgatcgcgga gtcggtggga
     2581 atgcgctgct tgaaagtcag gattgcgcga tcgccgacgc gacgcaggcg caaggcgcaa
     2641 cctccaaagt cgagtctgcc gccgcgatag agagtgttct cttcaaactc cacgggccgc
     2701 gacgatgctc caagatcgcg caggcgtttc tcaatagcct gctgcagccc tttcgccaag
     2761 cgatactttt tttcaatctc gatcggcatc tgcggctttt gaatttgaaa tctgaaatca
     2821 cgaatcgtca ggcctgtcgc agccagcgcc acacctccgg aatcgacgcc ttctttccag
     2881 tcatcagcat gccgactcga tagatgcgag acgtcagcca gatcaaaccc actacggtcg
     2941 cgaagccgat tcccagcgac aacgcgatct gccaaaacgg tggcgtctcg gtcacgattc
     3001 ttaccagcat cgtgattggc gcgaagaacg gaaacatcga agcccagaat gccagcgacg
     3061 agttggggct gcgaattatg gaaaacgaga gatagaaacc cgcgatgagc atcagcacga
     3121 ccggaaacgc cagttgcccg ccttcctgcg tcgtcgtgac catcgaacca accacggcgt
     3181 agattgatgc atagatgaaa aaaccaagca ggaagtagat cacgaaatag acgaacacca
     3241 tcggagggac atgcaggctg atcggaacac cccgcgatgc gaggaccggg atgcctacgg
     3301 ctgtgaaagt cgcgaaagcc aaaccccaga tgcttagctg ggtcagggcc actagagaga
     3361 cacctatgag tttgccaatc atcaagggaa acgatcgcat tgacgaaaaa agaatctcgg
     3421 cgatgcgcgt ttccttttct tcgatcactg ctccgagcac gagctggccg taaagcagga
     3481 cgctcatgta gatcatcaaa ctcagaccga agacgagata aaagttggct tcacctttgc
     3541 tttctccgcc tttgcctccg gcgttgaagg tgcggagctt cacgggctct gacatcttac
     3601 gaatcagctt ctcgtcaata tttgcttcaa cgagccgctc agaacgcacc gcgcggttga
     3661 cggaaacctc aacgtgtcct ttggtgaaag gatccgcggt gttacgagca tggaactcag
     3721 gttggccgtc tttgagaagg ttcgccggca agatcaagta accatcaagt gtcttgctgc
     3781 ggaccctcgt ctccaagtca tttgtaacgt cgtccatcga tcggccagcg agatgaactt
     3841 cttcaacctg aaagcttcca tgaatcaatt tctcggcctc gtccactcgt tccttagggt
     3901 tcgcattgac cgccgctggc ggcgacgacg attgttgctg cgattcatcg gaaccaaggt
     3961 cttcatcggt acctattgcc ctcgcgacgc gctcgtacat cttgcccgtt tggtcaacga
     4021 ttgcgagacg cgtcgggccg ccggctttga tactaaacat cagagcgggc acgacggtga
     4081 aacccgccat cagggccggc gctaagatgg tcatgatcac gaaaaacttc gtgcgcacgc
     4141 gctggatgta ttcgcgtttg acgacggcga agaattttct catgcgaatt ctctgacctt
     4201 ctcgataaag atgtcgtgca ggcttggctc gaccaattca aacttacgaa cgaccgcacc
     4261 caattcaacc agccgtctca gcaaaacctg cggattggca tctggcgtca ggagcacttc
     4321 agtgtcctcg ccattctcac gaatgttcgc gaccagcgca gggtcgttaa gcacgccgtc
     4381 gccgccgtcg aattgaagcg cgaccgcgtt gcgcgaaaag ctccgtctga tctcgcgcag
     4441 ttttccgtcc agcaccttgt gcgacttatt gatcatgcac acgtcgtcgc acagcttttc
     4501 ggcaatctcc atctgatgcg tcgagagaat gatcgtcttg cctgcggctt tctgtgccag
     4561 gatcgtgtcc ttcatcaact cgacgttgac gggatcgagg ccggaaaacg gttcgtctag
     4621 aatcacgaga tcgggatcgt gaatcaccgc cgtgatgaac tgaatctttt gctgcattcc
     4681 cttcgacagt tccttgctcc gcttttcttt ccaggcggag agttccagtc ttgacagcca
     4741 gctatcgatt cttttctcag cttccgggcc gcgcagatct ttcaactccg caaagaaacg
     4801 caactgctcg ccgactttca tcctcttgta gagcccgcgc tcctccggca gatagccaat
     4861 acgatcctgc agcgcggtgt tcatctgctg tcctaagagt tcgatccgcc ccgaatcggg
     4921 aacggtgatg ttgacgatca tgcgaatggt cgtagtcttg cccgcgccgt tcggaccgat
     4981 gagtccgaag acgcgaccgg gccgaacttg cagactgaga tcgctgacgg ccgtgaactc
     5041 gccgaagctt ttggtgacgt gttccagaac cagtgtgggt ttggcttctt cttccatgcg
     5101 tttgctgtta cgagaatcag cggcgaactg tttcagtgtt cgattcggaa cgacgagtac
     5161 gaccctacgg gatcggtgtt gatttcttcg atgtgcttga cgaaaccgaa gcgcgggccc
     5221 gcggcaagat cgtgtttgaa agactcgaca tcatgcgccg ggccttccgc aaacgcttca
     5281 actcggccat cgtcgaggtt cttcacataa ccgacaactt gatgccgcgc cgccgcacgt
     5341 tgcgcaaaga aacgataacc cacgccctgc acgtcgccgc tgatgaaaaa cttccgcgca
     5401 atcttgccag ccatgatctc agacgaagcg ctcatcttat cgcgcagtag tcaactcaac
     5461 aaccgcgatc ccgcccgccg cgagcgtgac tttcgcgacg ccattagaga tcggcaacga
     5521 ctgctcagta agccaatcgc gcgcattcgc gatcgattcg ccgcgcaagc taatcttcgc
     5581 tgaagcaatc gcgctgcgat cgacttgcgc catgccttgc tgtggcttga acacaccgtt
     5641 gtcgttgaac agcgtc
//
LOCUS       DASZZE010000455         5518 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_146337, whole genome shotgun sequence.
ACCESSION   DASZZE010000455 DASZZE010000000
VERSION     DASZZE010000455.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5518
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146337"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1468)
                     /locus_tag="VHD88_08800"
     CDS             complement(<1..1468)
                     /locus_tag="VHD88_08800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21933.1"
                     /translation="MPGLKRLLCSLILTAGILSHSPSNTHAQSPDAKPKGTASISGRV
                     TINGKAAAGIPVAAFGGDSFNRRAAAAQTITDSEGHYRLSGLAPAQYQVATLTPSLTT
                     AERGSETSYGFVYFGSSKNIILAAGEEVEDIDLKLVRGGVITGRVSDADNKPVIEEHV
                     SLQLVDENGNPSRTGSPLPYNSQMYQTDDRGMYRIYGLQAGRYKVSVGADTGVGSVAA
                     NGRGYYPRTYYPDVNDVAKATVVELGEGSEAANIDIQVGRRADTYSVAGRVVDSETGQ
                     AIAGARVGYGPAPQNQERFSAYYSGFPAGSRGEFRFEGLAPGRYGVNVSSEYEGGHVY
                     SDPVYFEVVDKDVSGLEVKALHGLSLSGIVVADGETQKDLLAQLAGVRISASVSSTSK
                     PQIYTSGTSLIAADGSFQINGLRPGRVGMGLNTQGPGLKRPSITRIEHDGVGLTQGFE
                     LQPGQSISGLRVVISYGTGAIRGTVRFEGGAPPPDARFS"
     gene            1708..3381
                     /locus_tag="VHD88_08805"
     CDS             1708..3381
                     /locus_tag="VHD88_08805"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HVS21934.1"
                     /translation="MALLKITDASGRQAQHKLNQQAPCMIGRAPDNQIVLDDPRASRH
                     HAHIKADDEGSFVLVDGVSVNGQLKRSANKVFVNGEQKFEHPLKDGDRVTIGASTIKF
                     EQPKEERTADLSYDDKPLGHTQLLMSAKDVMATVLREAQSSTAPGAPRDKVLESLQRK
                     ANILSELYEMSKALGAGFDLDKIFKKATDIIFRSTPADRVIALLTEGAVSEQNADDVK
                     LFPIATRARDEKLEAHARKMTIGRTITRKVMKDKVALLSQDAAADEQFAGVDSIVSQG
                     VRSTICAPLLTEAGVHGALYADRLDPFSAFKPDDLELISAVAAQTAIAVENVRAHERL
                     AKEEVARANYSRFLPEYVVKQMLDNPDSFKLGGVTQTITILFADIRGFTRISEHAAPE
                     KIVHLLNMYFSAMTDIIFAHGGTLDKYLGDGMMALFGAPAVTPKDAANALSAAVAMQR
                     RMVSINDELQKEGFPEIGIGIGLHTGEVIVGYIGSERRSEYTAIGDTVNTASRLESNA
                     KGGQILVSEVTAKAAHSRYTLTPRDPISVKNREQPVPLFEVEWQRATGT"
     gene            3499..4638
                     /locus_tag="VHD88_08810"
     CDS             3499..4638
                     /locus_tag="VHD88_08810"
                     /inference="COORDINATES: protein motif:HMM:NF014244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HVS21935.1"
                     /translation="MNLKSFFKRQIMVARVYGIPVRIDYRWFLVFALSVFLIASNLHK
                     STLQLVTFLLPPTDVVTAWTLGIITTLALFLSVFGHELSHAMMGRAEGIEIEEIVLHP
                     FGGLARLRTQPESPRAEFRVAVAGPAASFLFSLIGFVGAKLAAMAGFKGAVAVCFFVG
                     AGNLLLAVFNLFPGYPLDGGRVLRAIIWKRTGSIQDATRIAGFCGQLIALVLVLFGAY
                     MALASTFRAYFMGLWSVLVGLFLLSAATNVVRSARGTEPASVAEAMSAPIAIDPDLPI
                     SRFVDEILPLHRQTRFPVAQNRRLLGILTLEDLKNLPRDQWRSRSARDVMRPVNSQLF
                     VSDNTTMESANELIKHNGVGAVAVLNGAGELVGFLQRGQLKRRKK"
     gene            4944..>5518
                     /locus_tag="VHD88_08815"
     CDS             4944..>5518
                     /locus_tag="VHD88_08815"
                     /inference="COORDINATES: protein motif:HMM:NF014510.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diadenylate cyclase"
                     /protein_id="HVS21936.1"
                     /translation="MLMLLLPLNDFSKLAEPRAIADIVLVFLVVYGVLKLLRVGRAAL
                     MAAGIGVFALLYWLAVNQGLTTLGFVLRGGLLYIGVAFIVLFQSEIRRAVMNFSSRFR
                     SPFLRRHRGQFGEDRYDEIVLAATTLASTKTGALIVIERNVGLKNIVDAGVKLDAKLS
                     YDLIVAIFNPGSPLHDGAVIVRGDRIAAASC"
BASE COUNT         1151 a         1563 c         1576 g         1228 t
ORIGIN      
        1 tagaaaagcg agcgtcgggt ggcggcgccc ctccctcgaa tctcaccgtg ccgcgaatcg
       61 cgccggtgcc gtagctgatg acgacccgca gcccggaaat cgactggcca ggttggagct
      121 cgaatccctg agtcagcccg acgccgtcgt gctcaatcct tgtgatcgaa ggtcgcttca
      181 acccgggccc ttgtgtgttg aggcccatgc ctacacgacc tggtcgcaaa ccgttaattt
      241 ggaaactgcc gtcggcggca atcagcgacg tgcctgaagt atagatttgc ggcttcgaag
      301 tggaactgac actggccgag attctcacgc cggcgagttg ggccaacaaa tctttctgcg
      361 tttcaccgtc ggccactacg atgccgctca agctcaagcc gtggagggct ttaacttcca
      421 accccgagac gtctttgtcg acaacctcga agtaaaccgg atcgctgtaa acatggccac
      481 cttcgtactc ggacgaaaca ttgacgccgt agcggccggg cgcgagtccc tcgaaccgaa
      541 actctccgcg agagccagcg ggaaacccgc tgtaataggc actgaagcgc tcttgatttt
      601 gcggagccgg accatacccg acgcgcgctc ccgcaattgc ctggccggtt tcggaatcaa
      661 ctacgcgtcc agcaacactg tatgtgtccg cgcgacggcc aacttgaata tcaatgtttg
      721 ctgcttcgct tccttcgcct aattcgacca ccgtagcctt ggccacatcg tttacatcgg
      781 gataataggt tcgcggatag taaccacgac cattcgcggc tacgcttcct acgcctgtat
      841 cggctccgac actgactttg taacgtccgg cttgcaagcc gtaaatgcga tacatgcctc
      901 gatcatccgt ttgatacatc tgactgttat aaggaagcgg cgaacctgtt cttgatgggt
      961 ttccgttctc atcaaccagt tgcagagata cgtgctcttc gattaccggc ttgttgtccg
     1021 catcggacac gcgcccggta atcacgcctc cccgcaccag tttgagatcg atatcttcga
     1081 cttcttcacc cgctgctaag atgatgttct tactcgaacc aaaatagacg aagccgtaag
     1141 aagtttccga tccacgttcg gcagtcgtga ggctcggagt taacgttgca acctgatatt
     1201 gagctggtgc caatccagac aggcgatagt ggccttcgct gtctgtaata gtctgcgcgg
     1261 cggcagcacg tcgattaaaa gagtcgcccc cgaacgcggc caccggaatt cccgcagcag
     1321 ccttaccgtt gatcgtgacg cggccggaaa tcgaagcggt tcctttgggc ttcgcgtcag
     1381 gcgattgagc gtgcgtgttt gacggagagt gcgacagaat tcccgccgtc agaatcagtg
     1441 agcaaagcag gcgcttcaga ccgggcatgg aggatcctcc aattcaagtt cgaggctggg
     1501 ccagttccga gggcgtcatc atggcactgg cgcgttcgga gttcaagctc tagctggcgc
     1561 ggcgcaaacc gatgtaaaga ttgggctccc accggtcgtt gaacgccggg cctgctatgc
     1621 tgaaatgccc cttaccttgt agaatcgagt ttccgaacta accacgtcag agaatcgtta
     1681 gtgaattaac aacggtttcg gattcaaatg gccttactga aaatcaccga cgccagcggg
     1741 cggcaggcgc agcacaaatt gaaccagcaa gcgccgtgca tgattggccg cgcgcccgac
     1801 aatcaaattg tgctcgatga tccgcgcgcg tcgcggcatc acgcgcacat caaggcggac
     1861 gatgagggct cgttcgtgct cgtcgatggc gtgtccgtca acggacagct caaacgaagc
     1921 gccaataaag tcttcgtcaa cggcgagcag aagttcgaac atcctttgaa agacggcgac
     1981 cgcgtcacca tcggcgccag cacaataaaa tttgagcagc cgaaagaaga acgaaccgct
     2041 gacctgagtt acgacgacaa gcctctgggc catacgcagc tcttgatgtc ggcaaaggac
     2101 gtgatggcca cggtcctgcg cgaagctcaa tccagcacgg ctccgggcgc gccgcgcgac
     2161 aaagtgctcg agtctttgca gcgcaaggcc aacatcctca gtgaacttta cgagatgagc
     2221 aaagcgctgg gcgccggctt tgacctcgat aagattttta agaaagccac tgacatcatc
     2281 ttccgttcaa cgccggcgga tcgtgtgatc gcgctgctga ccgagggcgc ggtgagcgaa
     2341 cagaacgccg acgacgtgaa gctgtttccg attgcgacgc gcgcgcgaga cgaaaagctg
     2401 gaagcacacg cgcgcaagat gacgatcggt cgcaccatca cgcgtaaggt catgaaggac
     2461 aaggtagcgc tgctgtcgca ggacgctgcc gccgacgaac aatttgcggg cgtcgattca
     2521 atcgtctcgc aaggcgtgcg ttcgacgatc tgcgcgccgc tgttgaccga agccggtgtg
     2581 cacggcgcgc tttacgccga tcggctcgat ccattctccg cgttcaagcc agacgatctg
     2641 gaattgatca gcgcagtcgc cgcccagacg gccatcgcgg tcgagaatgt gcgcgcgcac
     2701 gaaaggctcg ccaaagaaga agtcgcgcgc gccaactata gtcgctttct gcccgagtat
     2761 gtcgtcaagc agatgctcga taaccccgat tctttcaaac tcggcggagt cacccagacg
     2821 atcacgatac tctttgccga cattcgcggc ttcacgcgta tttcggaaca cgcggcgccg
     2881 gaaaagatcg tgcatctgct caacatgtat ttctcggcga tgaccgacat catcttcgcg
     2941 cacggcggaa cgctggacaa atacctcggc gacggaatga tggcgctgtt tggcgcgccg
     3001 gccgtcactc ccaaggacgc ggcgaatgct ctcagcgccg cagtggccat gcagcgacgc
     3061 atggtgagta tcaacgacga gttgcagaaa gaaggctttc ccgaaatcgg tatcggcatt
     3121 ggcttgcaca ccggcgaagt catcgtcggt tacattggat cggaacgcag atctgagtac
     3181 accgcgatcg gcgacaccgt gaataccgcg tcacgtctgg aatcaaatgc taagggaggg
     3241 caaatcctgg tgagcgaagt gaccgccaag gccgcgcatt cgcgctatac gctcacgccg
     3301 cgcgatccca tcagcgtcaa gaatcgcgag cagcccgtgc ccttgttcga agttgaatgg
     3361 cagcgcgcca cggggaccta aggcaaaagg aaaaaggtaa aagacaaagg ggaaaaaccg
     3421 ggttgtcaac ggaacaactg atgccggaca agtgtcttgc tctttgcctt tttactcttg
     3481 ccttcttcct ttctgaagat gaacctcaaa tcctttttca aacgacaaat catggtcgca
     3541 cgcgtttacg gcattcccgt gcgcatcgac tatcgctggt ttctcgtctt cgcgctcagc
     3601 gttttcctga ttgcttcaaa tcttcacaag agcacgttgc agctcgttac tttcctgctt
     3661 ccgccgacag acgtcgtaac ggcctggacg cttgggatca taacgacgct ggcgcttttt
     3721 ctttcggtgt ttgggcatga actctcgcac gcaatgatgg gccgggccga aggcatcgag
     3781 attgaagaga tcgtcctgca cccgttcggc ggtctggcgc ggctgcgaac gcaaccagag
     3841 agtccgcgcg ccgagtttcg cgttgcggtc gcgggaccag cggccagttt ccttttttcc
     3901 ctgattggat tcgttggcgc gaagttggcg gcgatggctg gattcaaagg cgccgtcgcg
     3961 gtgtgctttt ttgttggcgc cggcaatttg ctgctcgccg ttttcaatct atttcccggt
     4021 tatccactcg acggcggtcg cgtgctgcgc gcaatcatct ggaagcgcac gggcagcatt
     4081 caagatgcca cgcgcatcgc cggcttttgc ggacagttga tagcgctggt gctggttttg
     4141 tttggagctt acatggcgtt ggcctcgacg tttcgcgcgt acttcatggg cttgtggtcc
     4201 gtcctggttg gtctgtttct gttgagcgcc gctacgaatg tagtgcggag tgcgcgcgga
     4261 actgagccgg cctcagtcgc tgaagcgatg tcggcgccaa tcgcgatcga tcctgatctt
     4321 ccgatcagcc gctttgttga cgagattctt ccgctgcatc gtcagacacg ttttcccgtg
     4381 gcgcagaata ggcgactgct gggcattctc actcttgaag atttgaagaa cctaccgcga
     4441 gaccaatggc gttcgcggag cgcacgcgac gtgatgcgac ctgtgaactc gcagctattc
     4501 gtttcggata acacaacgat ggagagtgcg aatgaattga tcaagcacaa cggcgtcggc
     4561 gcggtcgccg tcctaaacgg cgcaggcgag ctggtcgggt ttttgcaacg gggtcagttg
     4621 aaacgacgga agaagtgagt tcgggccgga agcctgaccg tgagggagtg cctccctcga
     4681 ttgtcttcta ttcgataatt gacatcttgt taaagtggcc ctcccttacg gttgggcttc
     4741 tgacacattt tgccaactca ccattgcctc acaccatttt ttccgcgata attccgtctg
     4801 agcgtccgtt aactgttggc cgggcgcgat catctgcgcg gttccctttg ggcaattgat
     4861 ttcaggctga gttttgcact gcgacttcgt ggtgtaccgc gatcagacta tcaccacagc
     4921 gagtgaagat cgcagaacca aacatgctga tgcttttatt gccgctaaac gacttttcca
     4981 aattggcaga gccgcgcgcg atcgccgaca tcgtgctggt ttttctggtc gtgtatggcg
     5041 tcttgaaact cctgcgcgtc gggcgcgcgg cgctcatggc cgccggcatc ggggtcttcg
     5101 cgttactgta ctggctcgcc gtcaatcagg gcttgacgac tttgggattt gtgctgcgcg
     5161 gcggcctgct ttacataggg gtcgcgttca tcgtcctgtt tcagtcagag attcgccggg
     5221 cggttatgaa cttcagcagt cgatttcgat cgccgttctt gcgacgccat cgcggccagt
     5281 ttggtgaaga tcgttacgac gaaatagttc tggcggcgac tactctggcg tcaacgaaaa
     5341 cgggagcgct gattgtcatt gaacgcaatg tcggactgaa aaacatcgtg gacgcgggcg
     5401 tcaagctcga tgcgaagctc agttatgatt tgatcgtggc gatatttaat cccgggtcgc
     5461 cgctgcatga cggcgcagtg atcgtgcgcg gtgatcggat tgccgctgct tcgtgttt
//
LOCUS       DASZZE010000456         3381 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_258725, whole genome shotgun sequence.
ACCESSION   DASZZE010000456 DASZZE010000000
VERSION     DASZZE010000456.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3381)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3381)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3381
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_258725"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..734
                     /locus_tag="VHD88_08820"
     CDS             <1..734
                     /locus_tag="VHD88_08820"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: protein motif:HMM:NF013250.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0016780 - phosphotransferase activity, for
                     other substituted phosphate groups [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HVS21937.1"
                     /translation="SRGRRAQRMFGASIGRAGQRIIDAMVRWLAHGHIPPNILTLVGV
                     AINVGSGLLFGFGRFFWAGIVLIVANLFDMLDGQVARLAGRVTRYGGFLDSSLDRLSD
                     MVVFVGLMVFYARDIEFHSTLNVVVAGAGMIGSVMVSYASARAESMIPKCDVGFLRRP
                     ERVVLFIIGALSTRPGSHNFFANRMPAVLWVLAVGSYWTFAHRMYHTWREINKSETSQ
                     EAELTVNQNHTPEIRREPALAPKTG"
     gene            939..1763
                     /locus_tag="VHD88_08825"
     CDS             939..1763
                     /locus_tag="VHD88_08825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21938.1"
                     /translation="MAKAEHELLSYGRAMIVGASGTVMCVGFLGSVIAVIFEYKPSSL
                     WFWTNLLQQWTIASAGEVAAWRLKWIALPVAAAVLWSGARLIRSIKKEPTRFAGLRAA
                     RVGFVAAVLATIMIAGLIGITIPERLRQRQLAIEAAIYARGYTLHRALLEYRDLHGFI
                     PAQDDVIAELKTLPDPNGSIAEALRGFDVNGYKPNAVLAATTRTKPQALRGSALRGAA
                     TRAEQPLSQGVSFTNYELRLPSEHKLFGTDDDFIMRDGLISKVSEPSSASSHPNTP"
     gene            1769..2056
                     /locus_tag="VHD88_08830"
     CDS             1769..2056
                     /locus_tag="VHD88_08830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21939.1"
                     /translation="MSFLARFRRKKEDPEIARRAWLLRAGHIGEATVLGTDPDGDGNM
                     MLSYSYSIGGVDYQSFQRLDEGQLQRKQNYLPGARVVLRYDSRRPANSFVV"
     gene            2141..>3381
                     /locus_tag="VHD88_08835"
     CDS             2141..>3381
                     /locus_tag="VHD88_08835"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF006367.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HVS21940.1"
                     /translation="MFTKILIANRGEIAVRVIRACRDLGISPVAVFSEADAAALHVRM
                     SDEAYCIGPAPSAQSYLNIDAIIAVAKKANAEAIHPGYGFLAENAKFARAVNDAAMIF
                     IGPTPAATEVMGSKTSARRAAIAAGVPVVPGTTEPLRSLEEAGETAAHFGYPVMLKAA
                     AGGGGKGMRQVANENDLSSAFETAQSEAASAFGNDDIYLEKVVERPRHIEIQVFADTH
                     GNVVHLGERECSIQRRHQKVIEECPSPMNDPSLRERMGEAAIRIARAVDYVGAGTVEF
                     LFSDISREFYFLEMNTRLQVEHPVTELVTGFDLVREQINVAAGAPLSFKQDEVRWLGH
                     AIECRVYAEDPENNFFPSPGKITWLRVPSGPGIRDDSGVTEGDEVSIYYDPMISKLAV
                     WGRTRAEAIDRMRRALDEYAVG"
BASE COUNT          700 a          938 c          985 g          758 t
ORIGIN      
        1 ggtcacgcgg gagaagagcg caaagaatgt ttggagcgag tatcgggcga gcaggccagc
       61 gcatcatcga tgcaatggtt cgttggctgg cgcatgggca tattcctccc aacattctga
      121 cgctggttgg cgtggccatc aatgttggtt cgggtctgtt gttcggcttt ggcaggttct
      181 tttgggccgg cattgttctg atcgtcgcta acttgttcga catgctggac ggacaagtgg
      241 cgcgtcttgc gggacgagta acgaggtacg gcgggtttct ggattcatct ctcgatcgct
      301 tgtccgacat ggtggtgttc gtcggcttga tggttttcta cgcgcgcgac attgagtttc
      361 attcgaccct caacgttgtc gtcgccggcg ccggaatgat cggctccgtg atggtgagtt
      421 acgccagcgc gcgcgctgaa agcatgattc cgaaatgcga tgttggtttt ctgcgacgac
      481 ctgagcgcgt tgtgcttttc attatcggag cactctcgac gcggccgggc tcgcacaact
      541 tttttgccaa ccgcatgccg gccgtgcttt gggtcctggc cgtcggttct tactggactt
      601 tcgcgcatcg catgtatcat acttggcgcg aaataaacaa aagcgagacg agccaggaag
      661 cggaactcac agtcaaccag aatcacaccc ctgaaatcag acgagagccg gcgttggctc
      721 caaaaacggg ctaatcattt ttatggccgg gagcgactga accggattta ttgacggcca
      781 accttgacga actgccagtc tcagttctaa gttagtccac acgttttaat ctctgaggta
      841 actgaatctt gatcatctgc ccctcttgcg gctcgaatgt gttaggcgat ctttgcctgg
      901 gttgtccgtc gtgcggtgcg tgcgcggtcg gtccgccgtt ggcaaaggcc gaacatgaac
      961 tgctttctta cgggcgcgcg atgatcgttg gcgctagcgg caccgtgatg tgtgttggtt
     1021 ttcttggttc cgttatcgct gttatctttg aatacaaacc ctcttcactc tggttctgga
     1081 cgaacttgct tcaacagtgg acgatcgctt cggctggcga agttgcggcc tggcgtttga
     1141 agtggatcgc gctccccgta gccgcggccg tgctttggag tggcgcgcgc ctgattcgaa
     1201 gcatcaagaa agagccaacg aggtttgcgg gtttgcgtgc ggcgcgcgtc ggatttgtag
     1261 cagcggtgtt ggcaaccatc atgatcgccg gcttgattgg catcacgatt cctgaacgac
     1321 tgcggcaacg tcaactcgcc atcgaggccg caatctatgc ccgcggttac actcttcatc
     1381 gcgcactgct ggaataccgc gacctgcatg gattcattcc cgcccaggat gacgtcattg
     1441 cggagctaaa aacactaccc gaccctaacg gctcgatcgc ggaggcgttg cgaggcttcg
     1501 atgttaacgg gtacaagcca aacgcggtgc tcgcagcaac cacaagaacc aaaccacaag
     1561 ccttgcgtgg cagcgctctg cgcggcgccg cgactcgcgc cgaacagccg ctcagtcaag
     1621 gtgtatcttt cacgaattac gagctgcggc tgccgagtga acacaaactg ttcggcactg
     1681 atgacgactt catcatgcgc gacggactaa tctcgaaggt ttccgaaccg tcgagcgcct
     1741 cgtctcatcc gaacacgccg taagcgtcat gtcctttctg gcccgcttcc gtcgcaaaaa
     1801 agaagatcct gaaattgccc gccgcgcctg gctgctgcga gcaggccaca tcggcgaagc
     1861 caccgtgctc ggaacggacc cggatggcga cggcaacatg atgctttcct acagctactc
     1921 gattggcggc gttgattatc aatccttcca acgactggat gaaggacaac tccaacgcaa
     1981 acagaattac ctgcccggcg ccagagttgt gctcagatac gattcacgac gtcccgcaaa
     2041 ttcatttgtg gtttaatacc agtgacaagt gaccagtgac aggtgacaag ttggttgtgc
     2101 tatcgtcact tgtcactcgt gacttgtcac tgtcgttctg atgtttacca aaatcctaat
     2161 cgccaaccgt ggtgaaatcg ccgtccgagt gatacgcgcc tgccgcgatc tgggaatctc
     2221 gccggtcgcg gtcttctcag aagccgatgc ggctgcgttg cacgtgcgga tgtctgacga
     2281 agcttattgc atcgggcccg caccgtccgc gcagagttac ctgaacatcg acgccatcat
     2341 cgccgtcgct aaaaaagcaa acgccgaagc gattcatccc ggctatggct ttctcgccga
     2401 gaacgcgaag tttgcccgtg ccgtgaacga tgctgcaatg atcttcattg gtccgactcc
     2461 ggcagcgacg gaagtgatgg gttcgaaaac gagcgcgcgt cgcgccgcga tcgcagccgg
     2521 cgtccctgtt gttcccggca ccaccgaacc attgagaagt ctagaagaag cgggagagac
     2581 tgccgcgcat ttcggttatc cagtaatgct gaaagcggcg gccggcggcg gcggcaaggg
     2641 catgagacag gtcgcaaacg agaatgattt gtcttcggct ttcgaaactg cgcaatccga
     2701 agcagcctca gcctttggca acgacgatat ctatctggaa aaagttgtcg agcgcccgcg
     2761 acacatcgag attcaagtgt tcgccgacac acatggcaac gttgttcatc tcggcgagcg
     2821 cgagtgttcg attcagcgcc gtcaccaaaa agtgattgaa gaatgcccat cgccgatgaa
     2881 cgatccgtct ctgcgagagc ggatgggcga ggcggcgatc aggatcgcgc gagcggtgga
     2941 ctatgtcggc gcgggcacgg tcgagtttct cttctccgat atcagccgcg agttttactt
     3001 tctggaaatg aacacacgct tgcaggtcga acacccggtt acggaacttg tcactggctt
     3061 tgatctcgtg cgcgaacaga tcaacgtggc ggcaggcgcg cctctgtcgt tcaaacagga
     3121 cgaagtgcga tggcttggtc acgcgatcga atgccgcgtc tatgccgaag acccggaaaa
     3181 caacttcttt ccctcgccgg gcaagatcac ctggctgcga gtgccgagcg gtcccggcat
     3241 tcgcgacgat agcggtgtga ccgaaggcga cgaagtttcg atctactacg atccgatgat
     3301 ttcgaaactc gccgtgtggg gacgcacgcg cgcagaggct atcgatcgaa tgcggcgggc
     3361 gctggacgaa tacgcagtgg g
//
LOCUS       DASZZE010000457         2858 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_156929, whole genome shotgun sequence.
ACCESSION   DASZZE010000457 DASZZE010000000
VERSION     DASZZE010000457.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2858)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2858)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2858
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156929"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(162..935)
                     /locus_tag="VHD88_08840"
     CDS             complement(162..935)
                     /locus_tag="VHD88_08840"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: protein motif:HMM:NF008692.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HVS21941.1"
                     /translation="MTRRRFYAPPTAFAPGEQTVVLSAEEARHARDVLRLHRGDEVYV
                     FDGMEKEFRCAVREFVRDDAVFDVLEEVEPTRSESPLALALGIVLLKGEKFDLVIQKT
                     VELGVTRVIPLDSERVDMRIRNSEDAHNRMTRWRRIAREAAKQSGRARVPEITAPLTL
                     EFLLMSAAEEKESSTEAIRLMFSERGGTSLAETTNNFEPPARVVALVGPEGGWTDTEI
                     ELAHAANWNIVTLGGRTLRAETAAIAIVALLQHRFGDLT"
     gene            complement(1043..1927)
                     /locus_tag="VHD88_08845"
     CDS             complement(1043..1927)
                     /locus_tag="VHD88_08845"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF018076.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HVS21942.1"
                     /translation="MSEPGKTWQAIDVIVSSPAREAIEYGLMEAGALGTETHELDSLR
                     VRVTGYFDKPIERERLRFGLHDALRIYNLAPTSVIDLKFSELADRDWLAEWKKDWQPV
                     EVGRFIIAPPWSEIASVPLASADASIKDRIVIRIAPGMAFGTGTHETTRLCLKAIEKH
                     FHGGSFLDVGTGTGLLAIAAGKMFPDARVEACDTDAEAIEIAKENARLNGIVDRISFR
                     VGTVDEQTPSADLVCANLTAPVIVDLLPSLLGATCGRLVLSGILDSQLGLVQSRLFEL
                     GATNFGTDQDGEWIALVI"
     gene            complement(1924..2838)
                     /gene="era"
                     /locus_tag="VHD88_08850"
     CDS             complement(1924..2838)
                     /gene="era"
                     /locus_tag="VHD88_08850"
                     /inference="COORDINATES: protein motif:HMM:NF000908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HVS21943.1"
                     /translation="MPEEIPTETSHRAGHVALIGRPNAGKSTLLNRLVGEKIAAVSNK
                     PQTTRFKILGIVTRPEGQIVLVDTPGVHKPGYELNRRMMVAVHDALLSVELVCLIRDA
                     AAPTGNGDRFVLDLVKQSEKPSLLLLNKTDKLADKSKLLPLIEWYQREHEWKAVVPIS
                     ALKGDQIEQLLAEMVRHLPEGEPLFSEDDLTDQPVRVLASEIVREKILEQTGDEIPYV
                     TAVVTEKWEEVREDFTRIYCAIFVERPSQKKIIIGRGAARLKQIGMRARHDIEKMLGH
                     RCHLELFVKVEDDWRDREHLLDELGIKS"
BASE COUNT          620 a          848 c          754 g          636 t
ORIGIN      
        1 ggtctgaaga ccatcacgcg catcgcggtc agtcctaacg gagcaaagat tgctttcgtc
       61 gctcgctgac cttttttctt atgtcttttg cgagaaaact caccgcagag acgcagagtg
      121 cgcagaggtt tcgcagagaa aaagtttttc ttacggactc cttaagtgag gtcgccgaag
      181 cgatgctgta atagggcgac gatcgcaata gccgcagtct cagcgcgcag cgtccgcccg
      241 cccagagtga caatattcca attcgccgcg tgcgctaatt cgatctcagt gtcagtccag
      301 ccgccttcgg gcccaaccaa tgcgacaact ctggccggcg gctcgaagtt gttcgtcgtt
      361 tcggccaatg acgtgccccc gcgctcggaa aacatcaggc ggatagcctc ggtggaagat
      421 tccttttctt ccgctgccga catcagcagg aattcgagag taagcggagc ggtaatctca
      481 ggcacgcgcg ctcggcccga ttgctttgcg gcttcccgag cgattcgccg ccagcgagtc
      541 atgcgattgt gtgcgtcttc gctattccgg attcgcatat cgacgcgttc cgaatccagg
      601 ggaatgacgc gggtgactcc aagctctacg gttttctgta tcacgagatc aaacttctcg
      661 ccctttagca agacgatacc aagagcgaga gcaagcggcg attcggatcg cgtgggctcg
      721 acttcttcga gcacatcgaa gaccgcgtcg tcgcgaacga actcacgcac tgcgcagcga
      781 aactcttttt ccatgccgtc aaaaacgtaa acttcatcgc cgcgatgcaa ccgcaaaacg
      841 tcgcgcgcgt ggcgcgcctc ttccgcgctc aacactacag tttgttcacc aggcgcgaac
      901 gccgtgggcg gagcataaaa tcttcggcga gtcatttgtt ttgctttgcg tcctggcgcc
      961 tttgcgtgaa tgttcttagt tcctcgattg cccgcagggt cacatcagaa ctctcgcaaa
     1021 ggcgcaaaga agacagtttc aattagatta ccagcgcgat ccactcgcca tcttgatcag
     1081 ttccaaagtt agtcgcgccc agctcgaaca aacgcgactg aactagtcca agctgcgaat
     1141 cgaggatccc tgagagaacc agacgaccgc aagtcgcgcc gagcagcgaa ggaagcaaat
     1201 cgacgatgac cggcgccgtc agattcgcgc aaaccagatc agcagacggc gtttgttcat
     1261 cgacagttcc cacgcgaaag ctgattcgat caacgatccc attcagccgc gcattctctt
     1321 tcgcgatctc gatcgcttcg gcgtccgtgt cgcaagcttc gacgcgcgcg tccggaaaca
     1381 tttttcccgc cgcaatcgcc agaagacctg ttcccgttcc gacatcgaga aagctgccgc
     1441 cgtgaaaatg tttctcaatg gctttcagac acaaccgcgt cgtttcgtgc gtgcccgtgc
     1501 caaaggccat tcccggtgcg atgcggatta cgatgcgatc ctttatagac gcgtccgcag
     1561 acgcaagcgg tactgacgcg atctcactcc acggcggcgc gatgatgaat cgcccgactt
     1621 caaccggctg ccaatctttc ttccactccg ccagccaatc gcggtcggca agttcgctga
     1681 acttgagatc gatcaccgaa gtcggagcaa gattgtagat ccgcaaggcg tcgtgtaacc
     1741 cgaagcgcag acgctctcgc tcgatcggct tgtcaaaata tcccgtgact cgaacgcgca
     1801 ggctgtcgag ttcatgggtc tcagttccca acgcgccggc ttccatcaaa ccgtactcga
     1861 tagcttcgcg tgccgggctt gaaacaatca catcgattgc ctgccaggtt ttgcctggtt
     1921 cgctcacgac ttgattccca gttcatccag caggtgttcg cggtcgcgcc agtcatcttc
     1981 gactttgacg aacaattcta ggtgacagcg atggccgagc atcttttcga tgtcgtggcg
     2041 ggcgcgcatg ccgatttgtt tcaggcgcgc cgcgccgcga ccgatgataa ttttcttttg
     2101 cgacggccgc tcgacaaaga tcgcacaata gatacgcgtg aaatcttcgc gcacctcttc
     2161 ccacttttcg gtgaccaccg cggtcacgta aggaatctcg tcacccgttt gttcaagaat
     2221 cttctcgcgc acaatttcgg aagccagcac acgaacgggc tggtcggtaa gatcgtcttc
     2281 cgaaaaaagc ggctcgcctt ccggcagatg tcgaaccatc tcggccaaca attgttcgat
     2341 ttgatcgcct ttcaaagctg agatcggcac aactgctttc cactcgtgct cgcgctgata
     2401 ccattcaatc aaaggtaaca actttgattt gtcggcgagc ttgtcggtct tgttcagcaa
     2461 aagaagagaa ggcttttcgg attgcttgac cagatcgagc acgaaacgat caccattgcc
     2521 ggtgggcgcc gccgcatcgc gaatcaggca aaccagctcg acgctcagca acgcgtcgtg
     2581 caccgcgacc atcatgcggc ggttgagttc atagccgggc ttgtgaacgc ccggtgtgtc
     2641 aaccaaaacg atctgaccct caggacgcgt aacgatgccg agaattttga agcgagttgt
     2701 ttgaggcttg ttcgagacgg ccgcgatctt ttcgcccacc agacgattca gcagcgtcga
     2761 cttgcccgca ttcggccggc caatgagggc gacgtgtccg gcgcgatggc ttgtttcagt
     2821 tgggatttct tctggcatgc agaccgggga ctatgaca
//
LOCUS       DASZZE010000458         4520 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_307138, whole genome shotgun sequence.
ACCESSION   DASZZE010000458 DASZZE010000000
VERSION     DASZZE010000458.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4520
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307138"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..429
                     /locus_tag="VHD88_08855"
     CDS             <1..429
                     /locus_tag="VHD88_08855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21944.1"
                     /translation="MNMVTEGGTGTGAMAPVKAAGIRSGGKTGTAQKAVPLLDPKTGQ
                     PKTRLVSERDPKGNIIRQHEEVILADRPRSDAWYLSFAPLEKPTIAMAVLLEGPGPGI
                     SFYGGKNAAPIAAQLILKAKALGYFSGGASQPAKRTSSRN"
     gene            473..2161
                     /locus_tag="VHD88_08860"
     CDS             473..2161
                     /locus_tag="VHD88_08860"
                     /inference="COORDINATES: protein motif:HMM:NF013279.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HVS21945.1"
                     /translation="MRNRLSSHLLLLFALAGIEVVGYYAIHRAALIRGYETSLIGAAR
                     DLLMYFPIIVVAFWISAAKKFKGNWALFTTAILLFSIGLLVQYRLYSDPEYNARNKAA
                     ARQEKTDALRLRYINETYDATKRQMMSLPPAPPPGHEAEVPAKESNYSIANALTASYT
                     WIPVFSLLGFALAYLFCVNDRFLSWIQRNSFIIVLLTLVPLAGAIVYSSAGKAAGNTT
                     PWEPSKVPFLLGFAGILTARYKDLARTYWGIPRARDVVPLIVMAMIPFIPFFALKDFG
                     QMLIFSGAYATLYLVAVRRWPQLLLFVGSVMLVIAILVIGALPRDIQEKVPLLPTIAR
                     PIQHALPSRIQQRFHLWLDGFDPPSPDEAWWKKDYDEALAKDPRMKELADQSEATKKS
                     VNTDIWFDKLAFQPAQAVFGIASGKTTGRGLGLGFPEVIPIADSDYVYAAIAEELGLA
                     GGAVVVLALIIFVTAGIRTSIEARDMFTKLCAAGLTAFMGIQALVNIGGITRALPMTG
                     ITLPFVSHGGFSLITSFSMLGMLMAFSHRNAQDAKAVARAKRKPDSALDLEAVQ"
     gene            2158..3630
                     /locus_tag="VHD88_08865"
     CDS             2158..3630
                     /locus_tag="VHD88_08865"
                     /inference="COORDINATES: protein motif:HMM:NF012693.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PP2C family serine/threonine-protein
                     phosphatase"
                     /protein_id="HVS21946.1"
                     /translation="MSAPTHTNKIQVASVSDRGLNEKRPLNEDSFLADAERGIFVVAD
                     GVGGAEAGEVASQKAVEVLDEAFRHKLNDGDDAEDLMELAIQRANSSIHQMAVEHPRF
                     SSMATTVVALHVDGNRATFGHVGDSRLYRLGSDGKLSRETEDHSIVEEEVRAGRMTPE
                     QAANHPSKNVISRALGAEDSVEVDMNTTEVEDGTTFLLCTDGITRHIPDNELRGLLAQ
                     GQNPQATCEEMKRRCYERGAEDNLTAVIVQVGTPKYDSSSIDEERTVDARLESVPAAP
                     PVGSETRLTPPSRIAFPGPTSPQQALASSSANAARSSSGKGRSAFRFFVFLLFIAAVG
                     AAFYGGMFYQRSRSAQEAATSSANQLAQEAERANTFERKRAAVDSDPQKWLAENGAAK
                     ATDSKDPEFLYLYGRALMLSGNHREAMQAFDLALNNLRAEPKANLSLGAELKLAEASA
                     ALKLKNQSPGARSQESLMAEQKAAAILDELLGMKSAVSTK"
     gene            3642..>4520
                     /locus_tag="VHD88_08870"
     CDS             3642..>4520
                     /locus_tag="VHD88_08870"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HVS21947.1"
                     /translation="MTELKLLQCRLDGRYDVEDCLGRGSYAEIYAARDLGATDERFRR
                     VAIKALNVLLQGYQDPDLERTLIQNFQNEAVALDRVRHPNIISRLGHGTALDLGGTAF
                     HYIVLEYLSGGDLAVLCRRESLGLNRSLRYLQQICAGLAHAHECGVIHRDIKPQNLLL
                     TADHETVKIADFGVAKLEAADGAITRVGTNIYAPPEHNPLVQSSPIDTGSLQNADAQL
                     TPAADIYSLAKTAYALIFGTPPRRFAHHPITELPAPMSEEFWASTILRVLERATQTRA
                     SERYQRVHDFWEELNDA"
BASE COUNT          969 a         1279 c         1315 g          957 t
ORIGIN      
        1 atgaacatgg tcaccgaagg aggcacgggg accggagcga tggcgcccgt aaaagctgcg
       61 ggcattcgca gcggtggcaa gaccggaacc gcgcagaaag ctgtgccgct tctcgatccc
      121 aaaaccggcc aaccaaagac acgcctcgtc agtgaacgcg atccaaaggg caacatcata
      181 cgccaacacg aggaagttat cctggccgac aggccgcgga gcgacgcgtg gtatttgagt
      241 tttgccccgc ttgagaaacc aacgatcgcg atggctgtgc tgcttgaagg tccggggccc
      301 ggcataagtt tttacggtgg caagaacgcc gcgccgatag cggctcaact tattctgaag
      361 gcgaaggctc ttggctactt cagcggtgga gcgagccaac ctgcgaagcg cacttcgtcg
      421 agaaattagg gagagtcgct gagagctgaa ggctgatcgc tgatcgcttg aaatgagaaa
      481 ccgcttatca tcacatttgc tgctgctgtt cgcgctagcc gggatcgaag tcgtcggcta
      541 ttacgcgatt caccgtgcgg cgctgattcg cggttacgag acttcgctga ttggtgcggc
      601 gcgcgacctg ctgatgtatt ttccgatcat cgtggtcgcg ttttggattt ctgcggctaa
      661 aaagttcaaa ggaaactggg cgctcttcac gacggcgatc ctactgttct caattggtct
      721 gctggtccag taccggctct acagcgatcc cgaatacaac gcccgaaaca aagcagccgc
      781 ccgtcaggaa aagacggacg cgttgcggct gcgctacatc aacgaaactt acgacgcaac
      841 caagcggcaa atgatgagcc tgccgccggc gccgcctccc ggtcatgaag ctgaagtgcc
      901 cgcgaaagaa tccaactact cgatcgctaa tgcgctcacc gcaagttaca cctggattcc
      961 cgttttctcg ttgctgggct ttgctctcgc ttatctcttc tgcgtcaacg atcggtttct
     1021 gtcatggata caacgcaata gtttcatcat cgtgctcctc acactggttc ctctggccgg
     1081 cgccatcgtc tattcgagcg cgggcaaagc ggcgggtaac acgacgccgt gggagccttc
     1141 aaaggttccg tttctcttag gcttcgctgg cattttgacc gcgcgctaca aagatctagc
     1201 gcgcacttac tggggcatac cgcgcgcgcg cgacgttgtg ccgctgattg tgatggcgat
     1261 gattccgttc attccgtttt ttgcgctgaa ggattttggc cagatgctga tcttcagcgg
     1321 tgcctacgcc acgctttatc tcgtcgcggt ccgtcgctgg ccgcagttgt tgctcttcgt
     1381 cggctcagtg atgctggtca tcgcgattct tgtcatcggc gcattgccgc gcgacatcca
     1441 agagaaggtt ccgctgctgc caacaattgc gcgccctatt caacatgcgc tgccgtcacg
     1501 cattcagcag cgatttcatt tgtggctgga cggatttgat ccgccgtcgc ccgacgaggc
     1561 gtggtggaag aaagactacg acgaggcact cgcgaaagac ccgcgcatga aagaactcgc
     1621 cgatcaaagc gaggcgacga agaagagcgt caacaccgac atctggttcg acaagctcgc
     1681 ctttcaaccg gcgcaggccg tctttgggat cgcatccgga aagacaaccg ggcgcgggtt
     1741 gggtttaggt tttcctgaag tcattcctat cgccgactcg gattacgttt acgctgcaat
     1801 cgccgaagag ttgggtctcg ccggtggcgc ggtcgtggtg ctggcgctga tcattttcgt
     1861 cacagcaggt attcgcactt cgatcgaagc gcgtgatatg tttacgaagt tatgtgccgc
     1921 cggcttgacg gcgttcatgg gcatccaggc gctcgttaat atcggcggaa tcacacgcgc
     1981 gttgccgatg acgggaatca ctttgccgtt cgtcagtcat ggcggcttta gcctgatcac
     2041 gagcttctcc atgctgggaa tgctgatggc tttttcacat cgcaacgcgc aagacgcgaa
     2101 ggcagtcgcg cgcgcaaagc gaaagcccga tagcgccctc gacctggagg ccgttcaatg
     2161 agcgcgccca cgcacaccaa caagattcaa gttgcttccg tcagcgatcg tggcctgaac
     2221 gagaagcgtc cgctgaacga agattcgttt ctggctgacg ccgagcgcgg catctttgta
     2281 gttgccgatg gagttggcgg agccgaggct ggtgaagtcg cttcgcaaaa ggcagtcgaa
     2341 gttctcgatg aagcctttcg tcacaaactc aacgacggcg acgacgccga agatttgatg
     2401 gagttggcga tccagcgcgc gaatagttca attcatcaga tggccgtcga acatccgcgt
     2461 ttctcgtcta tggcgactac ggtggtcgcg ctgcacgtcg acggcaaccg cgcgacgttt
     2521 gggcacgtcg gtgattcgcg actctatcgt ctcggttctg acggcaagct gagtcgcgag
     2581 accgaagatc attcaatcgt cgaagaagaa gtgcgcgcag gccggatgac tccggaacag
     2641 gctgcaaatc atcccagcaa gaatgtgatc agccgcgcgc tcggcgcgga agattcggtg
     2701 gaagtcgata tgaacaccac cgaagtcgaa gacggcacaa ctttcctgct ctgcactgac
     2761 ggcatcacac gccacattcc cgacaatgaa ctgcggggct tgctggcgca gggtcaaaat
     2821 ccgcaggcca cttgtgaaga gatgaagcgg cgttgctacg aacgtggcgc ggaagacaat
     2881 ctgaccgccg tcatcgtcca ggtcggaacg ccgaaatacg attcgtcgtc gattgatgaa
     2941 gagcgaaccg tggatgctcg tcttgagtca gttccggccg cgccgccagt tggttcggaa
     3001 acgcgtttga cgccaccgtc gcgcatcgct tttcctggtc cgacctcgcc gcagcaagct
     3061 ctggcgagca gttcagcaaa cgctgcgagg agttcgtctg gaaaaggacg ctctgcgttt
     3121 cgcttctttg tctttctgct atttatcgct gctgtcggcg cagcttttta cggcggcatg
     3181 ttttatcaaa ggtctcgctc ggcacaagag gccgctacat cgtcagcgaa ccagcttgcg
     3241 caggaagcgg aacgcgcgaa tacattcgag cgcaagcgcg ccgctgtcga tagcgatcca
     3301 caaaaatggc ttgctgaaaa tggcgccgcg aaagcgactg attcgaaaga tcctgagttc
     3361 ttgtatctgt atggtcgagc gttaatgctg agcggcaatc atcgcgaggc gatgcaggct
     3421 ttcgatctgg cgctcaacaa tcttcgcgcg gagccgaagg caaacctatc gttgggcgcc
     3481 gaactgaaac tggccgaggc atccgctgcg ctgaagttga aaaaccaatc ccctggcgca
     3541 aggtcgcagg aatcgttgat ggccgagcag aaagcggccg ccatcctgga tgaactgctg
     3601 ggcatgaaga gcgcagtgtc gacaaagtaa tctcggaatc aatgacagag ctgaagcttt
     3661 tacagtgcag gctcgacggc cgttacgatg tcgaagactg tctgggccgc ggcagctatg
     3721 ctgagattta cgcggcgcgc gatctcggcg caaccgacga acgctttcgt agagttgcga
     3781 tcaaagcact caacgtgctg ttacaaggct atcaggatcc cgatcttgag cggactctca
     3841 tccagaattt tcaaaacgag gctgttgcgc tcgaccgcgt tcgtcatccc aacatcatca
     3901 gtcgcctggg ccacggcacg gcgctcgacc tgggcggaac ggcttttcat tatatcgtgc
     3961 tcgaatatct cagtggcggc gacctggccg tcttgtgccg gagagagtcg ctcggactaa
     4021 accgatcgct gcgttaccta cagcaaattt gcgccgggct cgcccatgcc cacgagtgcg
     4081 gcgtgattca tcgcgacatc aagccccaga atcttctgct gaccgccgat cacgaaacag
     4141 taaagattgc cgacttcggc gtggccaaac tcgaagcggc agacggcgcg atcacgcgcg
     4201 tcggcacaaa catttacgcg ccgccggaac ataacccgct ggtgcaatct tcgccgattg
     4261 acaccggttc gttgcaaaac gcggacgctc agttgacgcc ggcagcggat atttattcgc
     4321 tggcgaaaac cgcctatgcg ttgattttcg gcacgccgcc gcgccgcttc gcgcatcatc
     4381 cgataactga actgccggcg ccgatgtcgg aagagttctg ggcgtccaca atcttgcgcg
     4441 tgctggaacg cgcaacgcaa acgcgtgcga gtgagcgcta tcaacgggtc catgatttct
     4501 gggaagaatt gaatgacgcg
//
LOCUS       DASZZE010000459         3563 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_156979, whole genome shotgun sequence.
ACCESSION   DASZZE010000459 DASZZE010000000
VERSION     DASZZE010000459.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3563)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3563
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156979"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            300..1319
                     /locus_tag="VHD88_08875"
     CDS             300..1319
                     /locus_tag="VHD88_08875"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HVS21948.1"
                     /translation="MKKSLMFKNAVRQLRHGFNRPFMVMFESTLHCNMKCGYCAIWQN
                     QQPEDRAVRERVFARMDEAAGFGVFAWSFSGGEPLMNPNMPDYIEYAANKGFFTSMPT
                     NGLALKKYADACVKLDQLEVSIDTLDREKFAQRRGVDGLPTLLAALDHILGNLDHHTI
                     KINAAVDLDNLDDLEALAKFCTERDLLLHTEAVHNVVRTTWKTEDVEMEQEALDKVAA
                     HVMKLKKEFKCVRFYTDYYKFYRDDGFTKKFPCRSASHLVNMRPDGSIQFPCAFVHLH
                     RGAPEMSLREIYESPEVRKIIAQSPEMWDFCKGCKIGCPYEVSAYRNNPLTAIRSAMD
                     FLQWA"
     gene            1348..2316
                     /locus_tag="VHD88_08880"
     CDS             1348..2316
                     /locus_tag="VHD88_08880"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HVS21949.1"
                     /translation="MTESSLVLERPSVRAVERPANDVAADQIAVRVRGLVKRYRDGTV
                     ANRGIDLDVRRGEVLSILGPNGAGKTTFLRQLTTSLRPTAGTVEIFGIDSVAAPQQAK
                     RLMGITPQEAGVFETLTVREHFEFFARLKGLSKRAAREATAETIHELDLDAEAAKRVG
                     TLSGGQRRRVLVGLALLGKPPLLVLDEPTTGLDPASRHAVWHVIRRAVGEGTTVILST
                     HYIEEAERLSDRIGIISAGSLIACGTQEELLARLSKSYRLSYQDPLEPFSDPCVRYFA
                     TFAEAQRHVAHSGLAEYSIARASLEDVYFTLTGHRFEDEEHEEARR"
     gene            2313..3050
                     /locus_tag="VHD88_08885"
     CDS             2313..3050
                     /locus_tag="VHD88_08885"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HVS21950.1"
                     /translation="MKRVNDVICVFRIHLARLRAEAGPFLLAALIFPSAMYLFTNAIS
                     GAAVEQQTRLRFLAGSIVFSLSLTAISWLGYLLLENRFTGRLKLFATLPLAPSSYVFG
                     IVIFGLIQAALGTGMLLLITRLLGVRTHVSIAPLAATILLTMLCLCGLAVIIASRARS
                     FSEGSLLTDSLGAGLVFVAPVYYSPETMPHALRLISEWLPTALAAHAVQAALAGSYAI
                     SKDLAVLGAMAILSLSVGFKLMRFREE"
     gene            3087..>3563
                     /locus_tag="VHD88_08890"
     CDS             3087..>3563
                     /locus_tag="VHD88_08890"
                     /inference="COORDINATES: protein motif:HMM:NF018613.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21951.1"
                     /translation="MTVQPRILVLTLSFGSGHLRAAQAIAKELADTDPGAEVLLMDAL
                     EECRGLFRACYEWPYWLMLRYAPVLWKWLNNARLEQKHGSTAPEWAFRFGCPKVFETI
                     NSFKPEVIVAVEVGACEMAVIARRRRMTRAPILNVITDYEAEPIWVKPEVNTFVVPD"
BASE COUNT          768 a          935 c         1067 g          793 t
ORIGIN      
        1 ttgtcgcgga cgtcgtcgat aacgaacaga cggcgccggc gacaggcaaa tcgagagcat
       61 ctttcacctt tacgcgcagg gcagttgtct gagcattctg tccgcagaca gtaatcgccc
      121 agaagaaaaa caagaccacg acgcagcgtc gcgaaaggga taacaccggt gagcgccaag
      181 gggacataaa ccagcacagt ttagcccaaa atcgaatttg agtgctaatg gctagaacaa
      241 aagcgcctcg aaacgtataa tagccgtcaa ggccttcaga gaagttaaga caccagcaaa
      301 tgaaaaagag cttgatgttc aagaacgcgg tgcggcaatt gcgccacggc ttcaaccgcc
      361 cgttcatggt gatgtttgag tcaacgctgc attgcaacat gaagtgtggc tactgcgcga
      421 tctggcagaa ccagcaaccc gaggatcgcg ccgttcgcga gcgcgtcttt gcgcgcatgg
      481 acgaagcggc gggtttcggc gtgtttgcgt ggagcttctc aggcggggag ccgctgatga
      541 atccgaacat gccggattac atcgagtacg cggcgaacaa gggcttcttc acttcgatgc
      601 cgaccaacgg cttggccttg aagaaatatg ccgacgcttg cgtcaagctc gatcaactcg
      661 aagtttcgat cgacacactc gaccgcgaaa agtttgccca gcgccgcggc gtggatggtt
      721 tgccgacttt actcgcggct ctggatcata tcctcggcaa cctggaccat cacaccatta
      781 aaattaacgc cgcggtggat ctggacaacc tcgacgacct ggaagcgctg gcgaaattct
      841 gcactgagcg cgatctgctg ctgcacaccg aagcagtgca taacgtcgtg cgcacgacat
      901 ggaagaccga agacgtcgag atggagcagg aagcgctgga taaagtcgca gcgcacgtga
      961 tgaaactcaa gaaggaattc aagtgcgtgc gcttctacac tgattattac aagttctatc
     1021 gcgacgacgg cttcaccaaa aaatttcctt gccgctcggc gtcgcatctt gtcaacatga
     1081 ggccggatgg ctcgattcag tttccgtgtg cgtttgtcca cttgcatcgc ggcgcgcccg
     1141 aaatgagcct gcgagaaatc tacgagtcgc ctgaagttcg aaagataatt gcgcagtcgc
     1201 cagagatgtg ggatttctgc aagggctgca agatcggctg tccttatgaa gtatcagcct
     1261 atcggaacaa tcctttaacg gcgatccgtt cggcgatgga ttttttgcag tgggcgtgaa
     1321 tctgagagtt ccgaatcgtt gagtgcgatg accgaaagct cgctggtatt ggaacggccg
     1381 agtgttcgcg cggttgagag acccgcgaac gatgttgccg cggatcagat cgccgtgcgc
     1441 gtgcgtggtc tggtaaagcg ataccgcgat gggactgtgg ctaatcgagg gattgatctt
     1501 gatgtgcgcc gcggcgaggt gttatcgatt ctcggaccaa acggagcagg caagacaacg
     1561 ttcctgcgcc agcttacgac ttcgctccgg ccgaccgcgg gtacagtaga aattttcggc
     1621 atagattccg ttgcggctcc tcaacaagcg aaacggttaa tggggataac gccgcaggaa
     1681 gcaggcgtgt ttgaaacgct gactgtgcgc gagcacttcg aattcttcgc gcggctgaaa
     1741 gggctttcga aaagagccgc gcgcgaagcc acggccgaga cgattcacga attggacctc
     1801 gacgcggaag ctgcgaaacg tgtcggcacg ctctcaggcg gtcagcgtcg gcgcgtgttg
     1861 gttggactcg cgttgcttgg caagcctccg cttctggttc tggatgagcc gacgaccgga
     1921 ctcgatccgg catcgcgaca cgcggtctgg cacgtcattc ggcgcgcagt tggtgaaggc
     1981 acgactgtca ttctctcgac gcactacatt gaagaggctg agaggttaag cgatcgcatc
     2041 ggaattatca gcgcgggtag tctgattgcc tgcggcacgc aggaagaact tctagcgcga
     2101 ctgtcgaaga gttatcgatt gagctatcaa gacccgctcg aaccattcag cgatccatgc
     2161 gtgcgctatt tcgcaacttt tgcggaagcg caaagacacg ttgcgcacag cggtcttgct
     2221 gaatactcga tcgcgcgagc atcgctcgaa gacgtttact ttacgctgac cggccatcgt
     2281 ttcgaagacg aggaacacga ggaggcgcgg cgatgaaacg agtcaacgac gtcatttgcg
     2341 tcttccgtat tcatctggcg cggttgcgcg cagaggctgg gccgttcctg cttgcggcgc
     2401 tcatttttcc gtcggcaatg tatctgttta caaacgcaat cagcggcgcg gcggtcgagc
     2461 agcaaactcg tttgcggttt ttggcgggct cgattgtctt ctcgctgtcg ttgacggcga
     2521 ttagctggct tggctatctg ttgcttgaga atcggttcac cggcagactg aaactgtttg
     2581 ccacgctgcc gcttgcccca tcttcttatg tcttcggcat tgtgatcttt ggtctgatcc
     2641 aggcggcgct cggcacggga atgttgctac tgatcacgcg tttgctgggc gtgcgaacac
     2701 atgtaagcat cgcgccactg gcggcaacga ttctgttgac gatgctttgt ctctgcggct
     2761 tggcggtgat catcgcgtcg cgcgcgcgga gtttcagcga ggggtcgttg ctaacggatt
     2821 cgctcggcgc cgggttggtt tttgtggcgc cggtgtatta ttctcccgag acgatgcccc
     2881 acgcattgcg cttgatttcc gagtggctgc cgacagccct cgcggcacat gccgtgcagg
     2941 cagcactcgc gggaagttac gcaatcagca aagatctagc ggtgctcggc gccatggcga
     3001 ttttgagtct ttcagtcgga ttcaaattga tgcggtttag agaagagtga tcgagtaact
     3061 gtcacgacat tactgtggtt gaaaccatga ctgtacagcc tcgcattctg gtcttgactc
     3121 tttcctttgg ctccggtcat ctccgggctg cccaagcaat cgcgaaagag ttagctgaca
     3181 cggatcccgg cgcagaagtg ctcctgatgg acgcgctcga ggaatgtcgt gggttgtttc
     3241 gggcgtgcta tgaatggccg tactggttga tgctgcgtta cgcgcccgtg ctctggaagt
     3301 ggctcaacaa tgcgcgcctt gagcagaagc acggaagcac cgcgccggag tgggcttttc
     3361 gattcggctg cccgaaagtt ttcgagacta tcaacagctt caagcccgaa gtcattgtcg
     3421 ccgtcgaagt aggcgcctgc gagatggccg tcatcgccag gcgtcggcga atgacgcgcg
     3481 cgccaatcct taacgtgatt acggattatg aagcggaacc aatttgggtg aagccggaag
     3541 tgaacacgtt tgttgtgcct gac
//
LOCUS       DASZZE010000460         3726 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_157020, whole genome shotgun sequence.
ACCESSION   DASZZE010000460 DASZZE010000000
VERSION     DASZZE010000460.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3726)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3726)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3726
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_157020"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1518
                     /locus_tag="VHD88_08895"
     CDS             <1..1518
                     /locus_tag="VHD88_08895"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0009166 - nucleotide catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase C-terminal domain-containing
                     protein"
                     /protein_id="HVS21952.1"
                     /translation="LAIATSFGLGPATQAQRECPVRVTLLQVNDVYQFSPVDGGTRGG
                     LARVSTLRKQIINESPHTLFLLAGDTLSPSIESNTYQGKQMIDAWNASGLDYATFGNH
                     EFDFGPDVLRERMRDSHFKWLAANVVDKKTGKLFADTPEFVIREFDGVKIGLFGIVLQ
                     ETLQTSRPGPDVDIQDPCATAARVIPKIHAAGAQVIVALTHLAMNEDKQLARCSGVDV
                     IIGGHEHTLLESMSGHAPIFKMTSDARELGRIDLNISKSTGKLESIDWQIIPVTDQVK
                     DDPAFASVTQKYGGLLKTLEQPIGRTDVDLDIKSANVRTRETNMADFVADAFRKVTDA
                     DVALVNGGSVRADTIIKPGILTKRDALSILPFNNRVVKLQVSGAVIRAALEHGVASVG
                     QETQPGRFPQVSGIRYAFDASRKPGARITSITVNGKPLDDRKTYALATTTYVAVEAGD
                     GYDMFRGATFLIRPEQAQVESDILQTAIASVRSIAPQADGRIKRVDVAKEQNTCH"
     gene            1575..1772
                     /locus_tag="VHD88_08900"
     CDS             1575..1772
                     /locus_tag="VHD88_08900"
                     /inference="COORDINATES: protein motif:HMM:NF027249.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HVS21953.1"
                     /translation="MKYKILLEQTDEGYSVSCPGLPGCWSQGETEEEAIENIQDAIRE
                     YLAGIDDLVKNSNVREVEVGV"
     gene            2009..3331
                     /locus_tag="VHD88_08905"
     CDS             2009..3331
                     /locus_tag="VHD88_08905"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HVS21954.1"
                     /translation="MTASIRVFLLACVCLLGTHIDAQPNPDLLAEISKIKAIDNHAHP
                     LKYVAEGEKPDDEFDALPLDVIEAFPLPLRLSPTNPEFIRAWHDLYGYAYNDMNSAHV
                     AELLRTKQGVMRDRGDSFPAWILDRLNIETMFANRVAMGRGLVAPRFRWVAFDDALIF
                     PLNNDAAKRFNRDYAAFYPGEERLLKRYLTDLKLNALPSSLDEYAKKVVTATLERQKQ
                     TGAVAVKFEAAYLRKLDFDNPDEARAGATYAQFVKSGEPPVADYKALQDFLFFYIARE
                     AGRLGMAVHIHCISGAGGFYRQSGSDPLLLETAFNDPSLRKTNFVVVHGGYPFTKEMG
                     QLLSKPNVYADFSAQTFFTYPRELSEILRNWLEIYPDKVLFGTDAFAFDPAIDWGEIA
                     WLSNTTARQALALALTGMMNDGEITRDRASELARMVLRENAIKLYGFK"
     gene            complement(3448..>3726)
                     /locus_tag="VHD88_08910"
     CDS             complement(3448..>3726)
                     /locus_tag="VHD88_08910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21955.1"
                     /translation="AKPSQIQTRVMLFVNGTDCGSRVIPVEDPKAPLIQEWKIDAWST
                     RLRAARGLPFTIRFAVTPESDWLYGVNISNWPLGYDAHDAAPVEVEIR"
BASE COUNT          835 a         1013 c         1081 g          797 t
ORIGIN      
        1 ctcgcgatcg cgacaagttt cggacttggc ccagcgacgc aggctcagcg cgagtgcccg
       61 gttcgcgtca cgctcttgca agtgaacgac gtctatcagt tctcgccggt cgatggcggc
      121 acgcgcggcg ggctggcgcg cgtctcgact ctgcgaaaac agatcatcaa cgaatcgccg
      181 cacacgcttt ttctgctggc gggcgatacg ctgtcgcctt cgatcgaatc gaacacttat
      241 caaggcaagc aaatgatcga tgcgtggaac gcgagcggac tcgactatgc tacgtttggg
      301 aatcacgagt tcgactttgg cccggatgtg ctgcgcgaac gcatgcgcga ttcgcatttc
      361 aagtggctgg ccgcgaacgt tgtcgacaag aaaactggca agctgtttgc cgacacgcct
      421 gagtttgtga ttcgcgaatt cgatggcgtg aagattggcc tgtttggaat cgtgctgcaa
      481 gagacgctgc aaacttcgcg tccggggccc gacgtggaca tacaagatcc gtgcgccacc
      541 gcggcgcgtg tgattccgaa aattcacgct gcgggcgcgc aagtgatcgt cgcattgacg
      601 cacctggcga tgaacgagga caagcagctc gcgcgttgct cgggtgttga cgtgatcatc
      661 ggcggccatg aacacacgct cctggagtcg atgtccgggc acgcgccgat tttcaaaatg
      721 acgtcggacg cgcgcgaact gggtcgcatc gatctcaaca tttccaaatc aaccggcaag
      781 ctggaaagca tcgactggca gatcattccg gtcactgatc aggtgaagga cgatccggcc
      841 ttcgcttcgg tcactcagaa gtatggaggc cttttgaaaa cattggagca gcctatcgga
      901 cgcaccgatg tcgatctgga cattaagagc gcgaacgtgc gcacgcgcga aaccaacatg
      961 gctgatttcg tcgctgatgc tttccgcaaa gtgacggacg cggacgtggc tttggtaaac
     1021 ggcggttcgg ttcgcgccga cacgatcatc aaaccgggaa tcctgaccaa gcgcgacgcg
     1081 ctttcgattt tgcctttcaa caatcgcgtc gtgaaattgc aagtcagcgg agccgtaatt
     1141 cgcgccgcgc tcgaacacgg tgtcgcaagc gtgggacaag aaacgcaacc cggacgcttt
     1201 ccgcaggtgt cgggcattcg ctacgcgttt gacgcgagcc gcaagccggg cgcgcgcatc
     1261 acgagcatta ctgtgaacgg aaagccgctg gacgatcgca agacctatgc gttggcaact
     1321 acgacttatg tggccgtcga agccggcgat ggctacgaca tgtttcgcgg cgcaacgttt
     1381 ctgattcgac ccgaacaagc gcaagtcgag tcagacattt tgcagacggc gattgcgtct
     1441 gtgcgatcga ttgcgccgca agctgacgga cggatcaagc gcgttgatgt ggcgaaagaa
     1501 cagaatacgt gccattgagt cgtcctaact gtgcagtccc ggtcgagacg cgctagaatc
     1561 gcgacggagg agcaatgaaa tacaagatcc ttttggagca aacggacgag ggctacagcg
     1621 tttcatgccc cggtctgcct ggatgctggt cgcaaggcga gaccgaagag gaggccatcg
     1681 agaatatcca ggacgccatt cgggaatacc tggcggggat agacgacctt gtgaagaact
     1741 ctaacgtgcg cgaggtcgag gtaggcgtct agcccatgcc aaagattccc ggcgtcaacc
     1801 atcttcaagc tatcagggct ttggagaagg ccaggtttag aattgtgcga cagggcaagc
     1861 acaccgtcat gtcggatggg attcgaatct taacaattcc tcgccataat ccagttaatg
     1921 cactaacaat gggcggcatc gctcgcgacg cgggtcttac ggttgaagaa ttcaagaagc
     1981 tattgtagct gagcggagcc aggcaaatat gacagcaagt attcgcgtgt tcctactcgc
     2041 gtgcgtttgt cttcttggaa cgcacattga tgcgcagccg aatccagatc tgcttgccga
     2101 gatttccaag atcaaagcca tcgacaatca cgcgcatcct ttgaagtacg ttgctgaagg
     2161 cgagaagcca gacgacgaat tcgacgctct gccgctggat gtgatcgaag cgtttcccct
     2221 gcctttgcgt ttgagtccga ccaatccgga atttattcgc gcgtggcacg atttgtacgg
     2281 ctacgcttac aacgatatga actcggcgca cgtcgcggag ctgttgagaa ccaagcaagg
     2341 cgtcatgcgc gatcgcggcg attcttttcc cgcgtggatt ttggatcggc tcaacatcga
     2401 gacgatgttc gccaatcgtg tggcgatggg tcgcggcctc gtcgcgccgc gttttcgctg
     2461 ggtggctttc gacgacgcgc tgatctttcc gctgaataac gatgccgcga aacgattcaa
     2521 tcgcgactat gccgccttct atccgggcga ggagcgtctg ctgaagcgct atctgaccga
     2581 tctaaagctc aatgcgctgc catcgtcgct tgatgagtac gcaaagaaag tcgtcacggc
     2641 gacgcttgag cgacagaagc agaccggcgc cgtggcggtg aagtttgaag ccgcatattt
     2701 gcgcaagctc gactttgata atcctgacga agcgagagct ggcgcgactt atgcgcaatt
     2761 cgtgaaaagc ggcgagccgc ccgttgctga ttacaaagcc ttgcaggact ttcttttctt
     2821 ctacatcgcg cgcgaagccg gtcggctcgg catggccgtg cacatccatt gcatctcagg
     2881 tgcgggcggg ttctatcgtc agagcggcag cgatccattg cttttggaaa ctgctttcaa
     2941 cgatccaagc ttgcgcaaaa cgaatttcgt cgtcgttcac ggcgggtatc cgtttacgaa
     3001 agagatgggc cagctattga gcaagccaaa cgtctatgcc gatttttccg cgcaaacgtt
     3061 tttcacgtat ccgcgcgaac tcagcgagat tctgcgcaac tggctcgaaa tctatcccga
     3121 caaagtcttg ttcggcaccg acgctttcgc attcgatccg gcgatcgatt ggggagaaat
     3181 cgcgtggctc tcgaacacga cggcgcgaca agcgctcgcg ttggcgctaa ccggaatgat
     3241 gaatgacggc gagatcacgc gcgaccgggc gagcgagtta gcgcgaatgg ttctgcgcga
     3301 gaatgccatc aagctttacg ggttcaagta atatcctgtt tgcctttgcg cctttcgact
     3361 tccttcgcgt ctttgcgtga aatgagctgt tcgcaaagtc atagtttcac gcaaaggcgc
     3421 agagattatt aaggcgcaaa gaagctctca tcgaatctca acttccactg gcgcggcatc
     3481 gtgcgcgtca taaccgagtg gccaattcga aatgttcacg ccgtaaagcc aatccgattc
     3541 cggcgtaact gcgaaacgaa ttgtgaaggg caggccgcgc gcggcgcgca gacgcgttga
     3601 ccacgcatcg atcttccatt cctgaatcaa aggcgccttt ggatcctcga ccggaatcac
     3661 gcgcgagccg caatcggttc cgttaacgaa taacatgaca cgtgtttgga tctgcgaagg
     3721 cttcgc
//
LOCUS       DASZZE010000461         1544 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_176612, whole genome shotgun sequence.
ACCESSION   DASZZE010000461 DASZZE010000000
VERSION     DASZZE010000461.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1544)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1544)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1544
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_176612"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1535)
                     /locus_tag="VHD88_08915"
     CDS             complement(<1..1535)
                     /locus_tag="VHD88_08915"
                     /inference="COORDINATES: protein motif:HMM:NF019298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21956.1"
                     /translation="MGNTTTLTQNDAEQTIALDIPVNPNVQARVMRIEASPSIAGTLF
                     GALDYLTSFPYGCTEQTMSSFLPNVIVAQALKDVPTAKLRASNDLDKKVQRGMDRLYA
                     YQHDDGGWGWWKDDKTDPFMTAYVVDGLTLATRAGYQIDTSRRDLGREKLSALLAAGK
                     RDDGNPIDDETRGYMIYAFTESGDSDGHYLEELYAKRDKLGPYGRALLALALQERKDG
                     RAREIAGAIAGAARADEFEAHWQTNRVNDYGRDVYLDAEATALSLKALAQIDPNNALL
                     PKVARWLAKNRRNGYYWLSTKETAFAIYGLTDYLKVSHELSPDYSFEIYLNGTQVAAQ
                     HVGASDAANAQALVITKKAGEVSNANQIRIVKHGRGALYVSTALEYFTADENVPAQAS
                     QNLKITREYLRLRVSENENGKPSWKIEPLTGELRSGDLIVVRLHLTGGRAQYLMIEDP
                     IPAGAEQVAQVSGIYLNYSTGQWSDWYSNREFRDNRTVIFQNYFDGDATFQYAMRVEV
                     PGE"
BASE COUNT          291 a          460 c          436 g          357 t
ORIGIN      
        1 aattcgccgg gcacctcgac gcgcatggca tattggaagg tcgcatcgcc gtcgaaatag
       61 ttctggaaga taacggtgcg attgtcgcgg aactcgcgat tgctgtacca atccgaccac
      121 tgcccggtgg agtagttcag ataaatacca ctgacttgcg cgacctgttc ggcacccgcc
      181 ggaattggat cctcgatcat caggtactga gcgcgcccgc ccgtcaggtg cagccgcacg
      241 acaattaagt ctccagagcg cagttcgccc gttaacggtt cgatcttcca actcggcttg
      301 ccgttttcat tctcagatac ccgcaagcgc agatactcgc gagtgatctt caagttctgc
      361 gacgcttgtg ccggcacgtt ttcgtccgcc gtgaaatatt ccagcgcggt cgagacgtac
      421 agggcgcccc gtccgtgctt cacgattcga atctgattgg cattgctgac ttcgccggct
      481 ttctttgtga tgaccagcgc ctgcgcgttc gcagcatcgc tcgcgccgac gtgctgtgcg
      541 gcgacctggg tgccattcag ataaatctcg aacgaatagt cgggcgacag ttcgtggctg
      601 acctttaaat agtcagtcaa accatagatc gcgaatgctg tttctttggt cgagagccag
      661 tagtaaccat tgcgccggtt cttcgccagc cagcgcgcga ccttcggcaa cagcgcattg
      721 ttcggatcga tttgcgccag ggccttcagc gatagcgccg tggcctcggc gtcaagatag
      781 acatcgcggc catagtcgtt gacccgattt gtttgccagt gcgcttcgaa ttcatccgcg
      841 cgggccgcgc cggcaatcgc gccggcaatt tcgcgggcgc gaccatcttt gcgctcctgc
      901 aatgctaagg cgagcagcgc acgtccgtac ggtccgagct tgtcgcgttt cgcataaagc
      961 tcttcgaggt agtgaccgtc gctgtcaccg ctttcggtga aagcatagat catgtagccc
     1021 ctggtttcgt cgtcgatcgg attgccgtcg tcgcgcttgc cggcggcgag taaggcggaa
     1081 agtttctcgc gtccaagatc gcgtcgcgac gtgtctatct gataacccgc gcgagtggcc
     1141 agcgtcagcc catcgactac gtaagcagtc atgaacggat cagtcttgtc atccttccac
     1201 caaccccagc cgccgtcatc gtgctgatag gcgtaaaggc gatccatacc acgctgcacc
     1261 ttcttgtcca gatcgtttga cgcgcgcagc ttcgcggtcg gcacgtcttt gagcgcctgc
     1321 gccacaatca cgtttggcag gaagctcgac atcgtttgtt cagtgcagcc atacggaaag
     1381 ctcgtcaggt aatcaagcgc cccgaacaac gtgccggcaa ttgacggtga cgcttcaatg
     1441 cgcatcacgc gggcctgaac gttgggattg accggaatgt cgagagcgat ggtttgctcc
     1501 gcatcgttct gcgtcagggt ggtcgtgttg cccattgtct gctt
//
LOCUS       DASZZE010000462         6149 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_112124, whole genome shotgun sequence.
ACCESSION   DASZZE010000462 DASZZE010000000
VERSION     DASZZE010000462.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6149
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112124"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            454..951
                     /locus_tag="VHD88_08920"
     CDS             454..951
                     /locus_tag="VHD88_08920"
                     /inference="COORDINATES: protein motif:HMM:NF019575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HVS21957.1"
                     /translation="MMNKNQKGFSLIELLIVVAIIGIIAAIAIPNLLASRRAANEGSA
                     QSSLRTIHSSEATYQATSGNGNFGLLTALQGANLIDAVLGSADTSTKSGFSFTVTKVD
                     FVQNVSPATFAATCIPVVTSGVSQTGTRKFGLTQDGVMHGQTDTLGTRLTAAELAATN
                     NVLGN"
     gene            1109..1609
                     /locus_tag="VHD88_08925"
     CDS             1109..1609
                     /locus_tag="VHD88_08925"
                     /inference="COORDINATES: protein motif:HMM:NF019575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HVS21958.1"
                     /translation="MQKKSNQHGFSLIELLIVVAIIGIIAAIAIPNLLASRRAANEGS
                     AQSSLRTIHSAEATYQSTAGAGNFGLLTALQGANLIDAVLGSADTSTKSGYTFTVTKV
                     DLVVNVSPATFAATANPLVTSGVSQTGTRKFGITQDGVMHGQTDALGTAMTAAELAAT
                     NNVLGN"
     gene            1821..2600
                     /locus_tag="VHD88_08930"
     CDS             1821..2600
                     /locus_tag="VHD88_08930"
                     /inference="COORDINATES: protein motif:HMM:NF024091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HVS21959.1"
                     /translation="MLSRTIPIARNAFREAVRDRVLYNLVLFVLLLIAGAIFLGELSA
                     GQDAKIIIDLGLSAMLLFGVFIAIFVGVGLVYKEIERRTLYAILSKPIGRGQFLLGKY
                     LGLCLTLLVNVLVMGLGVSLALVYVRRGWDPLVFRIWPAILLIYVELMIVTGVALLFS
                     TFSSPALSALLTFFVFIIGHFSADLKTLADSAGSGLARWLFRSLYYLLPNLSNYSMIT
                     AAAHGYVPDARSAAVAVVYAIVYIVVLLASATLVFNRRNFK"
     gene            2597..3508
                     /locus_tag="VHD88_08935"
     CDS             2597..3508
                     /locus_tag="VHD88_08935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21960.1"
                     /translation="MKKDALLFSVVVLGLAAVVLLAHWIDDHRQDMNARFSEERLYMD
                     GATAKRLTFAFNGLAADWYWMRSLQYVGRKIVNYEDTHDGRFNLNDLSSLDLRLLPSL
                     LHVTTTLDPQFMAPYEYGAVVLPELNQDEAIALLNYGMAANPSSWRLYQHLGYIYWQR
                     KDYSQASDVYATGAMLPGAPAWMAALSARMKAEGGSRDAAREMYRHLYEASNDQAVNE
                     MVTKQIMRLNSLDERDVIRRVLADYRVQSDRCASSWRDVTAALRAARLRVETASGAPI
                     DPSDTPYRLIKDGCDVDLNEDSKVPKR"
     gene            3649..4587
                     /locus_tag="VHD88_08940"
     CDS             3649..4587
                     /locus_tag="VHD88_08940"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HVS21961.1"
                     /translation="MPAIEIDNLTKDYEVGFLRKRKVRALDALSLTVEQGQIFGFLGA
                     NGAGKTTTLKLLMRLIYPTAGTARILGRDIDDISMHARIGYLPENPYFYDYLTAREFL
                     SYCAELFGQDRATRAHRTEELLTRVNLETKSWDRQLRKFSKGMLQRVGLAQALVNDPE
                     IVFLDEPMSGLDPVGRREVRDLIASLRTQGKTIFMCSHILSDIEVLCDNVAILKRGRL
                     GHAGSLDDLRARETRSVEVIATGTDAAVLKAQLPHGASVTPTASGVRIEVADERAVDA
                     VIAALRRANGKLVSVQPLRQSLEELFLEPVQQKPAR"
     gene            complement(4699..5151)
                     /locus_tag="VHD88_08945"
     CDS             complement(4699..5151)
                     /locus_tag="VHD88_08945"
                     /inference="COORDINATES: protein motif:HMM:NF013921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HVS21962.1"
                     /translation="MSSELDTNVFPRAYLITFGTYGTWMHGEDRGSIDRQHNVYGTPG
                     LEPNRYRKQAETRQLKHPLLLKPARRKAVEAAIREVCHVRRYDLLAVNVKTNHVHAVI
                     AAARMPEPIVEALKAYATRKLRSKGLISATTKPWFVTAALDICGKKSR"
     gene            complement(5245..5742)
                     /locus_tag="VHD88_08950"
     CDS             complement(5245..5742)
                     /locus_tag="VHD88_08950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21963.1"
                     /translation="MPRDQATPEDKSRRMIVIVVAVIAAALIGGSFYLLLRKSMAPSA
                     PPSLSGAIRPGSADWPKYSKQIALDDPEADESPRALGDIVMTLHTTARNFTGRTITGL
                     EVRAAVLDHQGHPVKEQTVVVIPTVMRSGLEPNKTMQVSVALYGFTNSDDRAKIKMDV
                     TGFKF"
     gene            complement(5829..6080)
                     /locus_tag="VHD88_08955"
     CDS             complement(5829..6080)
                     /locus_tag="VHD88_08955"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HVS21964.1"
                     /translation="MRRHHTSEDRVHRAVKRAIRQASIAKHGSSHTFRHSFATHLLED
                     GYDIRTVQELLGHKDVRTTMIYTHVLNKGGRGVRSPLDQ"
BASE COUNT         1293 a         1754 c         1640 g         1462 t
ORIGIN      
        1 attccgcgcc gccgcgctac cgatccttcg ccgagacgac gcgacgaaga tttcccggaa
       61 accaacaaca gttctgaaca ggctgctcgc gcgggcgagc gctgaactgg cggaaactcg
      121 actgtgaggg agggtgctgt agtccgcgtg tgccgaaaaa aaagcaccct ccctcacggt
      181 cgggtttctg cctaaaaccg tcaccgcttc gctgacacaa tttgtcagca accaagtctt
      241 gtcacgatca cttctcaatc acaccaaccg taatcacgaa aacccttaga ttttcagcgt
      301 attcctgcgg ctgctgttca tcggtgtctt tggcacggcg cttgataaaa gtccccgcga
      361 caaatcgcgc gctgcggttg gttcgatgag acaaagccgg tggcgcgaag gcaaaaacaa
      421 accagcttat ctcttaagga gcaaaagaaa gacatgatga acaaaaacca gaagggcttc
      481 tcgcttatcg agctgctcat cgttgtggcg atcatcggca ttatcgcggc gattgctatc
      541 cccaatcttc tcgcttcgcg gcgcgcggcg aacgagggct cagcccagtc atccctgcgc
      601 accattcaca gttcggaggc tacctaccag gcgacctcag gaaacggtaa ctttggactt
      661 ttgaccgcgc ttcagggcgc gaacctgatt gacgcagtcc ttggttccgc cgacaccagc
      721 accaagagcg gcttcagctt taccgttacc aaagttgact ttgtgcagaa cgtttcgcct
      781 gcgactttcg ccgccacttg cattccggtt gttaccagcg gcgtttcgca aaccggaacg
      841 cgcaagtttg gccttaccca ggacggggtc atgcatggcc agacagatac tctcggcaca
      901 cgcctgaccg ccgccgaact cgcggcaacg aataacgttt tgggcaacta aaaatgcttg
      961 acctgcgggg tgagcgaaat ctcgccccct ggtttttgtc caaacaacgg attccgtgct
     1021 ttctggcact gcacagttac aaaagataga gatggagtag gagcattcgg catcaggaat
     1081 cgtctttact aagagaggaa atgaaaacat gcagaagaaa agcaatcaac atggcttctc
     1141 gctgatcgaa cttctgatcg tcgtcgcgat tatcggtatt atcgccgcga tcgcgattcc
     1201 gaatctcctg gcttcgcgcc gcgccgcaaa cgaaggctct gcgcagtctt ctctccgcac
     1261 cattcacagc gcggaagcta cttatcaatc gacggctgga gcaggtaact ttggacttct
     1321 gacagcgctt cagggcgcga acctcattga tgcagtcctt ggctctgccg acaccagcac
     1381 caagagcggc tacacgttca cggttaccaa agttgatctt gtggtcaacg tttcgcccgc
     1441 gactttcgcc gcgactgcta atcctctagt taccagcggt gtttcccaaa ctggtactcg
     1501 taaatttggg ataacccagg atggcgtgat gcacggccaa actgatgctc tcggtacagc
     1561 tatgaccgct gccgagttgg ccgccacaaa taacgtgctc ggcaactaga gcactggtta
     1621 taacgctaac gcgataatag gggcagggtc tgaggccctg cccccttttt ttctccaact
     1681 ggtggcatga ccgcgcttgg caactgaaat cagtttttcg gaaggcaagc tctctaagcc
     1741 gcggagtcga aagcgaaagc ttcgtctccg caattttttt gctttgaacc cgcctcactg
     1801 cccgtgtata ttcagcacgc atgttgagcc gcaccattcc gattgcgcgc aacgcttttc
     1861 gcgaagcggt gcgcgatcgg gtcctttaca acctggtcct ttttgttttg ctgctgattg
     1921 cgggcgcgat ctttctcggt gagctttccg ccggccagga cgccaaaatc atcatcgatc
     1981 tgggattgag cgcgatgctg ctcttcggag tattcatcgc aatttttgtt ggcgtcggcc
     2041 tggtttacaa agagatcgag cggcgcacgc tttacgcgat cctttcaaaa ccaatcggcc
     2101 gtggccagtt tcttcttggc aagtatctcg gcctttgcct cactctgctg gtgaacgtcc
     2161 tggtcatggg tttgggcgtt tcactggcgc tcgtctatgt gcggcgcggc tgggatcccc
     2221 tggtgttcag aatctggccg gcaattcttt tgatctacgt cgagctgatg atcgtaacag
     2281 gcgtggcgtt gctcttctca acattttcgt cgccggcact ttcagccctg ctgacattct
     2341 ttgtatttat cattggacac ttcagcgctg acttgaaaac gctggcggat tcagccggca
     2401 gcgggctggc gcgatggctc tttcgttcgc tctattactt gctgcccaat ctttcgaact
     2461 acagcatgat caccgccgcc gcgcatggat acgtaccgga cgcgcgctcc gccgcggtcg
     2521 ccgtcgttta cgcgatcgtg tacatcgtcg tgttgttagc gtcggccacg ctggttttca
     2581 atcggcgaaa tttcaaatga agaaagatgc tcttctattt tcggttgtcg tgctggggct
     2641 cgccgccgtc gttctgctgg cgcattggat cgacgatcat cggcaagaca tgaacgcccg
     2701 attcagcgaa gagcgtctgt acatggatgg cgctaccgca aagcgtctga cgtttgcttt
     2761 caatgggctc gccgccgatt ggtactggat gcgctcgctg caatacgtcg gtcgcaagat
     2821 agttaattac gaggacacgc acgacggtag attcaacctg aacgatcttt cctcgctcga
     2881 tcttcgcctg ctgccgtcgc tgttacacgt gaccactacg ctcgatccgc aattcatggc
     2941 gccttacgaa tacggcgcag tcgttttgcc tgagctgaat caggatgaag ccatcgcgct
     3001 tttgaattac ggcatggccg cgaacccgtc gtcgtggcgt ttgtaccagc atctcggtta
     3061 catctactgg cagcgaaaag attattcgca agccagcgac gtttacgcca ccggagcaat
     3121 gttgccgggc gcgcccgcgt ggatggccgc gctgagcgcg cgcatgaaag ccgaaggtgg
     3181 ctcgcgcgac gcggcgcgtg agatgtaccg tcatctttac gaagcgtcca acgaccaagc
     3241 cgtgaacgag atggtgacga aacagatcat gcgccttaat tcgctggacg agcgcgacgt
     3301 gattcgccgc gtcctcgccg attatcgagt gcagtccgac cgatgcgctt catcatggcg
     3361 agatgttacc gccgccttgc gcgcggcgcg attgcgagtt gagactgcga gcggcgcgcc
     3421 gatcgatcct tcagacacac cgtatcgctt aatcaaggac ggctgcgatg tcgatctgaa
     3481 cgaggactcg aaagttccga aacgatagac tgccacagag atccagagac acagagaaaa
     3541 gctgactagc aaaatgatcg atcctagaac gcttcatgtc ttttctggtt tttatctata
     3601 tatctctgtg cctctgtgcc tctgtggcga tgtgtttgga ccaaaagaat gcctgcaatc
     3661 gaaatcgaca acctaaccaa ggattacgaa gtcggctttt tgcgcaagcg caaagtgcgc
     3721 gcgctcgacg cgttgtcgct caccgttgag caaggccaaa tctttggctt tctcggcgcg
     3781 aacggcgcgg gcaaaacgac gactctgaaa cttttgatgc gtctgattta tccaaccgcc
     3841 ggaacggcgc gcattctggg ccgtgacatc gatgacatct caatgcacgc gcgcatcggt
     3901 tacctgccag agaatcctta cttctacgac tatctgacgg cacgcgaatt cctgagttac
     3961 tgcgccgaat tgtttggaca ggatcgcgca acccgtgcac atcgcacaga agaactactg
     4021 acgcgtgtca atctcgaaac aaaaagttgg gatcgacaac tgcgcaagtt ttcgaaaggc
     4081 atgctgcaac gcgtcggctt ggcgcaagcg ctcgtcaacg atcctgaaat tgtttttctc
     4141 gatgagccga tgagcggcct cgatccggtg ggccgtcgcg aagtgcgcga tctgatcgcc
     4201 tcgctgcgaa cgcaaggcaa gacaattttc atgtgttcgc acattctttc ggacattgaa
     4261 gtgctctgcg acaacgtcgc gattctgaag cgcggacgcc ttgggcacgc gggctccctc
     4321 gatgacctgc gcgcgcgcga aactcgctct gtcgaagtga tcgccaccgg cacggacgca
     4381 gcggtgctta aagcgcaact tccgcacggc gcgtccgtaa ctccgaccgc gagcggcgtt
     4441 cggattgaag ttgcggatga aagagcagtc gatgcggtga tcgccgcgct gcgaagagcg
     4501 aacggcaagc tggtttcagt tcagccgcta agacagtcgc tggaagaatt gtttcttgag
     4561 ccggtacagc agaagcccgc gcgttagcaa gggctccagt ctgagccccc ccttacagtt
     4621 acagtcgggc ttctgcttgg gcgcttctgt ttgatcagtc ttcgccttga tcgtacatga
     4681 cgtaagcaat cgctttcgtc acctgctctt ctttccacag atatcgagtg ctgccgtgac
     4741 gaaccaaggc ttcgtcgtcg ctgaaatcag gcctttgctt cgcagcttgc gcgtagcata
     4801 ggctttaagt gcctcaacga tcggttcggg catgcgcgca gcggcaatta ccgcatgaac
     4861 atgattggtt tttacattga ccgccaatag atcgtaacga cgaacgtgac acacttcgcg
     4921 tatcgctgct tcaacggctt ttcgtcgagc aggcttgagg agtagtggat gcttcagttg
     4981 ccttgtctct gcttgtttgc gatagcggtt tggttcgagt cccggagttc cgtaaacatt
     5041 gtgttggcga tcgattgagc cgcgatcttc accgtgcatc cacgtgccat acgtaccaaa
     5101 ggtgatgagg taggcgcgcg gaaatacatt tgtatcaagt tctgatgaca cagtggaagt
     5161 ataaccaagt atagccaagc agcagcccgc gcgttagcaa gggctttcat accgagccct
     5221 cccttacagt cgggcttctg cttgctaaaa cttaaatccc gtcacatcca tcttgatctt
     5281 cgcacgatcg tcgctgttcg taaacccgta caacgccact gacacttgca tcgtcttgtt
     5341 tggctcgagt ccagagcgca tgaccgtcgg tatcacgacg acagtttgct ccttgaccgg
     5401 atggccctgg tgatcgagca ccgccgcgcg cacttccaat ccggtgatcg tgcggccagt
     5461 gaagttacgc gccgtcgtgt gcagcgtcat cacgatgtcg cccagcgcgc gcggcgactc
     5521 atccgcttca ggatcatcca gcgcaatctg cttgctgtac tttggccagt cagcagagcc
     5581 gggccggatg gcgccactca gacttggcgg cgcgctcggc gccatagact tgcgcaacag
     5641 caagtaaaaa gaaccgccaa tcaacgcggc tgcgatcacc gcgacgacga tgacgatcat
     5701 ccgccgtgat ttatcttcgg gcgttgcttg gtccctcggc atgactcggt tagacgctta
     5761 tgttacctca catgttccaa tccgcgcgag cactttaccc tttacccttc accctttacc
     5821 cttcaccctt attgatccag cggacttctt acgccgcgac cgcccttgtt caagacgtgg
     5881 gtgtagatca tcgtcgtgcg cacatccttg tgacctaaca attcctgcac ggtgcgaatg
     5941 tcgtaaccat cttcgagcag gtgcgttgca aagctgtggc gaaatgtatg gctggatccg
     6001 tgtttggcga tgcttgcctg tctgatcgct cgcttcactg cacggtgtac tctgtcttct
     6061 gatgtgtgat gccgccgcag tttcccagag cgaggatcaa ctgaaagttt gcctgccgga
     6121 aaaacgtatt gccatttgca ttcctttgc
//
LOCUS       DASZZE010000463         3345 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_16159, whole genome shotgun sequence.
ACCESSION   DASZZE010000463 DASZZE010000000
VERSION     DASZZE010000463.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3345)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3345)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3345
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16159"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..440
                     /locus_tag="VHD88_08960"
     CDS             <1..440
                     /locus_tag="VHD88_08960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21965.1"
                     /translation="ESLQERLKNWSYLLTQVIPYRPLGAGIGAGSLSEARFNQDADFP
                     PIDSSILSHAITCGIPGILLFIWILSRATWLSFRAARRASLGDRDAIVKRIIAAVMCA
                     LVLNGVFGLTFTLYSVAPLAWLFMGWISAETLKTRRERETILI"
     gene            445..1671
                     /locus_tag="VHD88_08965"
     CDS             445..1671
                     /locus_tag="VHD88_08965"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HVS21966.1"
                     /translation="MKILFYNHTGKVSGAERVLLMILSKLDRSRFDPVVLCPADGRLI
                     ESVRALGVKTVEVDPLAARFTWRVDRLVRYVVSFISVVRAARVAVVREAPDIVQANSI
                     RAGLVMSAATVGLSVPVVWHVHDLLPRHPLSTLIRLFVCASRRNQVIAISRAVAARFS
                     GKLFRLFRRRVPVMTILNAVDLERFQPDSESRKELRRALGVAEGQVLIGSVGQLTPRK
                     GQRELIDAFAEVAREIPNAVLLIIGEALFNRDAEYAESLVRAANSSGFADRIRFLGPR
                     EDVPALMRALDLLVVNSRAEPFGLTVVEAMASGTTVLASATDGIPEIVRHGESGWLVN
                     GGDHASLVAAISMLLCDANLRRRLSDNALRDVRARFSAVRFSAEMNAFYRNTITRGKT
                     PHNDLAGRLTTELSAD"
     gene            1733..2908
                     /locus_tag="VHD88_08970"
     CDS             1733..2908
                     /locus_tag="VHD88_08970"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HVS21967.1"
                     /translation="MSRIALVHDYFVQMGGAERVAEAMHDSFPSAPMYTTVALPQSLP
                     LGLRAADIRTSPLQRLPSIERRFRHYFMLYPFAIEHFDLSQYDLIFSSSSGYAKGVRR
                     RRNAIHVCYCHTPMRWVWRYDDYVAREGFNGLVRAALPLALWGLRKWDLRASQQPNYY
                     IANSRLVAQRIKTIYGREAFVIPPPIDVNRFQMSNEIDDYYLVLSRLMPYKRIDLAIE
                     ACKRMNRRLLVIGDGPDRARLEKLADDRIEFLGRQPDAIVNTYLSRCRALLFPGEEDF
                     GMAPLEANAAGRPVIAYRGGGAVETVEEGTTGVFFDQPSSRALAEAMEKFESLRWNQQ
                     ELRRHAERFDRNVFAFRVLQFLGSVAPSSCAEELLTGARLLSQNLSQRVWPRLALVG"
     gene            2920..>3345
                     /locus_tag="VHD88_08975"
     CDS             2920..>3345
                     /locus_tag="VHD88_08975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21968.1"
                     /translation="MMQQLESLFGQAKLQPFPFEGSDRPWRRGPASPVIWPNEVHVWK
                     IDLSAQWSSENQETLSNDEKARAARFRFHLDTDRFIAARASMRIILARYLWTKPAELK
                     FEVNPFGKPHLVGGQNKLGLRFNLSHSHEMALLAVARNRD"
BASE COUNT          674 a          916 c          978 g          777 t
ORIGIN      
        1 aagagagtct tcaagagcgc ttgaagaatt ggagttacct gttgacgcag gtcattcctt
       61 atcggccgct gggcgccggt atcggcgccg gctcgctaag cgaagcgcgt ttcaatcaag
      121 acgctgattt cccgccaatc gacagctcga tcctttcgca cgcaattacc tgcggaattc
      181 ccggaatatt gctgttcatt tggattcttt cgcgggcgac atggctttca tttcgagcag
      241 cgcgccgcgc gtcgctcggc gatcgcgacg caattgtcaa gaggatcatt gccgcagtga
      301 tgtgtgcgct ggtgctgaat ggcgtgtttg ggctgacgtt cactctctac tcggtagcgc
      361 cgctggcgtg gctgttcatg ggatggatca gcgccgaaac gttgaagacg cgtcgcgagc
      421 gcgaaaccat cttgatctaa agtcttgaaa attcttttct acaaccacac gggaaaagtc
      481 agcggcgccg aacgcgtgct gctgatgatt ctgtcaaaac tggatcgcag ccgcttcgat
      541 ccggttgtgc tctgtcccgc cgatggacga ttgattgaaa gcgtgcgcgc cctgggtgtc
      601 aaaactgtcg aagtcgatcc gctggcagcg cgctttacct ggcgcgtcga tcgtctggtt
      661 cgatatgtcg tttcgttcat tagcgtagtt cgcgcggcgc gagtcgcagt cgtcagagaa
      721 gcgcccgaca ttgttcaagc gaacagcatt cgcgccgggc tcgtgatgtc tgcggcgact
      781 gtcgggctca gcgtgccggt tgtttggcac gtacacgatc ttttgccgcg tcatccgctg
      841 agcacgttga ttcgtttgtt tgtgtgcgca tcacggcgca atcaggtcat cgccatatcg
      901 cgggcggtcg cggcgcgatt cagcggaaaa ctgtttcgct tgtttcgcag acgtgtgccg
      961 gtgatgacaa ttcttaacgc cgtcgatctc gaacgctttc aaccagattc ggaaagcaga
     1021 aaagaacttc ggcgcgcgct tggagttgca gaaggccaag tcttaattgg cagcgtaggt
     1081 caactaacac cacgcaaagg tcagcgcgag ctaatcgatg cgttcgcaga agtcgcccgc
     1141 gaaatcccga acgccgtgct cctgatcatt ggcgaagcgc tcttcaatcg cgacgcagag
     1201 tatgcagagt cgctggttcg ggcggcgaac tcgtcgggct tcgcggatcg aattcgtttt
     1261 cttgggccaa gagaagacgt tcccgcgctg atgcgcgcgc ttgatctgct tgtggtcaac
     1321 tcgcgcgccg agcccttcgg tttgaccgtt gtcgaagcga tggccagcgg tacgacggtg
     1381 ctggcgtcag cgacggacgg catcccagag atcgttcgcc acggcgaaag cggttggctg
     1441 gtgaacggtg gagatcatgc ttcgttggtc gcagccatat cgatgcttct gtgcgacgcc
     1501 aaccttcgca ggcgacttag cgacaatgca ctccgcgacg ttcgcgcgcg tttttccgcc
     1561 gtcaggttct cagccgaaat gaacgctttc tatcgaaaca cgattacccg tggcaaaacg
     1621 ccgcataacg atctcgcggg aagactcaca actgaattga gtgcggattg aaaacacgcg
     1681 gcctttctca gtttattaga tcttagatca aaggtcagag ggtttagcca gagtgtccag
     1741 aatcgcactc gttcacgatt atttcgtcca gatgggcggc gccgagcgcg tggccgaggc
     1801 catgcatgat tcgtttccgt ctgccccgat gtacacgacc gtggcgctgc cgcagagttt
     1861 gccactcggg ttgcgcgccg ctgacattcg tacgtcgcca ctccaacgct tgccatcgat
     1921 cgagcgacgc tttcgtcatt acttcatgct gtatcctttc gcaatcgagc atttcgatct
     1981 ttcgcagtac gacttgatct tcagcagcag ctccggctat gcaaaaggcg tacgtcgtcg
     2041 gcgcaacgcg attcacgttt gctattgcca cacgccgatg cgctgggttt ggcgctacga
     2101 cgattatgtg gcgcgcgaag gtttcaacgg ccttgtgcgc gctgcattgc cgttggcctt
     2161 gtgggggctg cgcaaatggg atctgcgcgc ttcgcagcaa cctaattact acatcgcgaa
     2221 ctcgcgcctg gtcgcgcagc gaatcaaaac aatctacggt cgcgaagcct tcgtcattcc
     2281 gccgccgatt gacgtgaaca ggtttcagat gtcgaacgag attgacgact actatctcgt
     2341 gctctcgcgt ttgatgcctt acaagcggat cgatttggcg atcgaagctt gcaagcgcat
     2401 gaatcggcga ttactggtga ttggcgacgg gcccgatcgc gcgcgccttg aaaaactcgc
     2461 cgatgacaga attgaattcc tcgggcgaca accggatgcg atcgtcaata cctacttatc
     2521 tcgctgccgc gcgctattgt ttcccggcga agaagatttt ggcatggcgc ctttggaagc
     2581 aaacgccgcc ggccggcccg tgattgcata tcgcggtggc ggcgcagtcg aaacggttga
     2641 agaaggaacg accggcgtgt tctttgatca gccgagcagt cgcgcgctgg ctgaagcgat
     2701 ggaaaagttt gagagtctca ggtggaacca acaggagttg cgaaggcacg cggagagatt
     2761 cgatcgaaac gtgtttgctt ttcgcgtctt gcaattcctc ggctcggtgg cgccgtcttc
     2821 gtgcgcggaa gagcttctaa ccggcgcgcg tctgctctcg cagaaccttt cacagcgtgt
     2881 ctggccgaga cttgcgctcg tcgggtaaac gccggagcga tgatgcagca attagaatca
     2941 ttattcggac aagccaaact tcagcccttt ccatttgaag gctcggaccg gccgtggaga
     3001 aggggaccgg catcgcctgt tatctggcca aacgaagtac acgtctggaa gattgatctc
     3061 agcgctcagt ggtcgagtga aaatcaggag acactctcaa acgacgagaa ggcgcgggca
     3121 gcgcgctttc gttttcatct ggataccgat cgctttatcg ccgcgcgggc gtcaatgcga
     3181 attattttgg cgcggtatct ctggaccaag cccgcggaat tgaagtttga agtcaatcct
     3241 ttcggcaaac ctcatctcgt cggcggtcaa aacaagttgg gactgcgatt caatctttcg
     3301 cattcgcatg aaatggcgct gctggcagtc gcgcgcaacc gcgac
//
LOCUS       DASZZE010000464         3996 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_16180, whole genome shotgun sequence.
ACCESSION   DASZZE010000464 DASZZE010000000
VERSION     DASZZE010000464.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3996)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3996)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3996
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16180"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1007
                     /locus_tag="VHD88_08980"
     CDS             <1..1007
                     /locus_tag="VHD88_08980"
                     /inference="COORDINATES: protein motif:HMM:NF024545.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HVS21969.1"
                     /translation="QSQLSAHDLAQARLQVLESLIQREVLYQRADQEKLLPTEETVTT
                     TINDQKQQGGMTGEEFDRKLKEQGMTMEALREEAKKDLSIKALQDKYAGKISISDREV
                     EDYYNANKQQFVNARGVGLAMIVVDPADNSQQGIQNDAKGDADAKTKIDGVYQQLKTG
                     DFASIARVKSEDESLLHGGDIGFATEEQLKQNGFPQELISQLFGPMSVGNYTAPVRFS
                     SPSYPGGRWYIFKLEEKRLQTENLTLESQGVRQQITVELTKQRKDILTAALLEVALSE
                     ARIVNNLAANMLNNPSNLGLRPAGTKSPKPASSPTAAATSSPATRPITPTSAASPAKK
                     "
     gene            1161..3143
                     /locus_tag="VHD88_08985"
     CDS             1161..3143
                     /locus_tag="VHD88_08985"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HVS21970.1"
                     /translation="MLFRLSEVHKSYGAQDVLRGVSLQINPSEHVGLVGRNGAGKTTI
                     FRLVNEEETTDRGEVVRARGLKLGLLAQHVHFGPGSTVHESALAAFGHLQQIEHEMHD
                     LEHRMADAGDDLEKILARYSDLQHEFEREGGFEYSAKAEAILQGLGFDRDTWQMETEK
                     LSGGQQNRLGLARLLLAQPDVLLLDEPTNHLDVGAVEWLEEFLQTYVSAFVIISHDRY
                     FLDRACRRIIEIENGRATSYTGNYSAFLVEREERRESQQRAFDNQQRLIAKTEEFIRR
                     NLAGQKTKQAKSRRTMLERLDRVEAVRANQASGNFSLQEIERAGTHVLTLLDTTVGYP
                     GKTMARNLSLILRRGECLGVIGPNGSGKTTFLRTILDKTPTLAGEVRWGAKVQVGYYA
                     QQLEDLDDRNEIIIELRRVAPSTATAGELRSFLAKFLFFGDDVYKHVRDLSGGEKGRL
                     SLAKLIYSRVNVLVLDEPTNHLDIPSREALEEALAAYEGTIITISHDRYFLDRVATQI
                     LALDGAGNSEHYNGDYTEYHDWRAARLKTGVEQYEPARPAAIGTLRLKEKSVPPAVAG
                     GSPRAKKSKSVPPVSADGSPRVKIIKKPRSAEIIEAEISKLEKRLSELSGEMAKPEVA
                     RDISKLVKANEDYQQTDARLAELLDEWERAETTEYR"
     gene            3235..3309
                     /locus_tag="VHD88_08990"
     tRNA            3235..3309
                     /locus_tag="VHD88_08990"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3267..3269,aa:Val,seq:gac)
     gene            3783..>3996
                     /locus_tag="VHD88_08995"
     CDS             3783..>3996
                     /locus_tag="VHD88_08995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21971.1"
                     /translation="MNFLPFGLRGCVCLIIFQLASLTLCLLLSSVVEAQDTLTGAFEG
                     IISNSQNGAAIEGASVEIINQQTGLII"
BASE COUNT          972 a         1071 c         1141 g          812 t
ORIGIN      
        1 aacagtcgca gctttcagcg catgacctgg cgcaggcgcg ccttcaggta ctcgaaagct
       61 tgatccagcg cgaggtgctc tatcaacgtg ccgatcagga gaagcttctg ccgactgagg
      121 agacagtcac cactacgatc aacgaccaga agcagcaagg tggcatgacc ggcgaagagt
      181 ttgatcggaa actgaaggag cagggcatga cgatggaggc cctgcgcgaa gaagcgaaga
      241 aggacctgtc gatcaaagcg ctccaggata agtacgccgg caagattagt atcagcgatc
      301 gcgaagtcga ggattactac aacgccaaca aacagcagtt cgttaacgcg cgcggcgtgg
      361 ggttggcaat gatcgtggtc gatcccgccg acaatagcca acaaggaatc cagaatgacg
      421 cgaagggtga cgcggatgca aagactaaga tcgatggtgt ctatcagcag ttgaagacgg
      481 gcgattttgc cagcatcgcg cgcgtcaaga gcgaagatga gagtttgctc cacggcggcg
      541 acatcggctt tgcgaccgag gagcaactca aacaaaacgg ctttccgcag gagctaataa
      601 gccagttatt cggaccgatg tcggtgggaa attacacggc tccggtccgg tttagttcac
      661 cgagttatcc cggcggacgc tggtacatct tcaagttgga ggaaaagcgt ttgcaaactg
      721 agaacctgac cctggagagc cagggcgtgc gtcagcaaat caccgtggaa ctaaccaaac
      781 agcggaagga tattctgact gcggccttgc tcgaggtggc gttgtcagag gcaagaatcg
      841 tcaacaacct ggccgcaaac atgctcaata accccagcaa tctgggcctg cgtcccgcag
      901 gaacgaagtc gccgaagcct gccagcagcc cgactgcggc tgcgacttca tcgccggcta
      961 ccaggccgat tactccgact agcgcggcgt caccggcgaa gaagtgatcg cggagcacgc
     1021 aatgctcgtt tagatggcgc acttgtgcgc tagtgtttga cgttgatttg aagtgggcgc
     1081 ggtgcctgac tgacttggtg accgcgcccg ttttgtgtga attaggtggc gcacaagtgc
     1141 gccttctaaa cttggactac atgctgtttc gtctttccga agttcacaaa tcctacggcg
     1201 cgcaagacgt cctgcgtggc gtctcgctgc agataaatcc cagcgagcat gtcggtttgg
     1261 ttgggcgcaa cggcgccggc aagaccacaa tctttcgcct ggttaacgag gaagaaacca
     1321 ccgatcgtgg cgaagtcgtg cgggcgcgag gcttgaaact tggtttattg gcgcagcacg
     1381 tccacttcgg acctggttcg accgtacacg aatcggcgct cgcggcgttc ggtcatttgc
     1441 agcagatcga gcacgagatg catgacctcg agcaccgcat ggccgacgcc ggcgatgacc
     1501 tggaaaagat tctcgcgcgt tacagcgatc tgcagcacga gttcgagcgc gaaggcggct
     1561 ttgaatactc agcgaaggcc gaagcgatcc tccaggggct cggcttcgac cgcgacacgt
     1621 ggcagatgga aacagaaaaa ctttccggcg gacagcaaaa ccgtctcggc ctcgcgcgtt
     1681 tgttgctggc ccagccggac gtacttctgc tggacgaacc gactaaccat cttgatgtcg
     1741 gcgccgtcga atggctcgaa gagtttctgc aaacctacgt atcggctttt gtgattatta
     1801 gccacgatcg ttattttctt gatcgcgcat gccggcgcat catcgaaatt gaaaatggaa
     1861 gagcaacgag ctacacggga aactattccg cattccttgt cgagcgtgaa gaacgccgcg
     1921 agagtcagca gcgcgctttt gataaccagc aacgactgat tgccaaaacc gaagagttca
     1981 ttcgccgcaa tctcgcgggg caaaaaacca agcaggcgaa gtcgcgccgc acgatgctcg
     2041 aacgtctcga ccgcgttgaa gcagtgcgcg ccaaccaagc ttcgggaaat tttagtttgc
     2101 aggagatcga gcgtgcggga acgcacgtgc tgacgctcct cgacacgacg gtcggttatc
     2161 cgggaaagac catggcgcgg aacctctcgc tgattcttcg gcgcggcgaa tgtctcggcg
     2221 tcattggtcc aaacggatcg ggcaagacaa cttttcttag aacgatcctc gacaagactc
     2281 cgaccctggc cggtgaagtc cgctggggcg cgaaggtcca agttggctac tatgcgcagc
     2341 agctcgaaga cctcgacgac cgtaacgaga taatcattga gttgcgtcgt gtcgcgcctt
     2401 caacggcgac ggcgggtgag ctacgatcgt ttctggcgaa gtttcttttc tttggtgacg
     2461 atgtttacaa acacgtgcgc gatctttccg gcggagagaa gggaagactc tcgctggcga
     2521 agttgattta ctcgcgcgtg aatgtgctcg tgctcgacga gcctacgaat catctcgaca
     2581 ttccatcacg tgaggctttg gaagaagcgc tcgccgctta cgaaggaaca atcatcacga
     2641 ttagtcacga ccgctacttt ctcgatcgag ttgcgacgca gattcttgcg ctcgacggcg
     2701 cgggcaattc cgagcattac aacggcgact acaccgaata tcacgattgg agagcggcga
     2761 gattgaaaac cggcgtggaa caatacgagc cagcacggcc tgctgcgata gggaccttac
     2821 gtctcaagga gaagtcggta ccacctgcgg tagcgggtgg gtcaccccgt gcgaagaaga
     2881 gcaagtcagt accgcctgtg tcagcggacg gatcgccgcg cgtcaaaata atcaagaagc
     2941 cgcgcagcgc tgagatcatc gaagcagaaa tctcgaaact ggaaaagcgt ctgtctgagt
     3001 tgtcgggaga gatggccaaa ccagaggttg cgcgcgacat cagtaaactt gttaaggcaa
     3061 acgaagacta tcagcaaaca gacgcgcgat tggccgaact ccttgatgag tgggagcgag
     3121 ccgaaacaac cgagtatcgc tgagagaaac tcgcttgaca cgctgtgaag ccgtttgtta
     3181 ctttcggccc tcgcttgcaa ttgatttgcg gcaagcgcaa ttgaaaattt ccataggcgc
     3241 gtagctcagg ggtagagcac taccttgaca cggtaggggt ctggggttca aatccccacg
     3301 cgcctaccaa tatccttaac agtgtaaagt atttaccgtc gctaagcccg cttcacgccc
     3361 gccggatttg acagactttt ggcagacttt aaaccgaaag tctgttgtcg cgagactagc
     3421 cattcaaagc ctttaactgc ggcgccgctg taagtgtaaa tattattggt tggatggaat
     3481 tctcggtagc gacaacatgc caacctcttc tccgaggttc tccagcggcg cgatcccgat
     3541 caaagcggcg acgattcttg gctaggttag gtcaaccgct gcccgattga cgactatcga
     3601 gatccaacac gcgatgactt gttcattcgt cacatcaaca gagtaaccag caacgttttg
     3661 gttcgacagt aatgcgcact aaccaaacgc gtacgcagtg aggtgcaatg gcgcacttgc
     3721 accgaagtgt ccgcctgtga tgtgatgcgc cgcaaataac acttatcgag caacggaggc
     3781 gcatgaactt tctacctttc ggcttgcgag gttgcgtttg cctgatcatc ttccagctcg
     3841 catcgttgac actgtgcctc ttgctgtcat cggttgtaga agcccaagac acactcacgg
     3901 gtgcattcga gggcatcatc agcaatagcc agaacggagc cgccatcgag ggcgcaagcg
     3961 tcgaaatcat caatcaacaa actggcctca tcattc
//
LOCUS       DASZZE010000465         4627 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_307459, whole genome shotgun sequence.
ACCESSION   DASZZE010000465 DASZZE010000000
VERSION     DASZZE010000465.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4627)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4627)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4627
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307459"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..612
                     /locus_tag="VHD88_09000"
     CDS             <1..612
                     /locus_tag="VHD88_09000"
                     /inference="COORDINATES: protein motif:HMM:NF013225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HVS21972.1"
                     /translation="QRQLRNFGMPKPEGYRKAIRVMKLAEKFGRPIFCFIDTPGAYPG
                     IDAEERGQAEAIAYNLREMAKLSVPIIVTVIGEGGSGGALAIGVGDQVLMLENAIYSV
                     ISPEGCAAILWKDSSQAARAAEELRLTAQDLFAEGIADQIINEPTGGAQTSHDEAARL
                     LDIALCAKLAESGTNDAQERLGRRYRKLRQLGKWGTSDAGMTA"
     gene            complement(657..1091)
                     /gene="ssb"
                     /locus_tag="VHD88_09005"
     CDS             complement(657..1091)
                     /gene="ssb"
                     /locus_tag="VHD88_09005"
                     /inference="COORDINATES: protein motif:HMM:TIGR00621.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HVS21973.1"
                     /translation="MSFNKITLVGNLGRDPELRYTPQGTPVCSFSLATNERRKDRTTG
                     ENNDITTWFRVTLWGRQAETASQYLTRGRPVYIEGRLRVEEWTDRDGKPRHTLEVHAT
                     DMQFIGGGGRGDEAGAAPAKASAAVSEAAPEPTDLSDDDIPF"
     gene            1277..2638
                     /gene="miaB"
                     /locus_tag="VHD88_09010"
     CDS             1277..2638
                     /gene="miaB"
                     /locus_tag="VHD88_09010"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR01574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HVS21974.1"
                     /translation="MSATVYVETFGCQMNVADSERAALRLRAAGFDLAGSPQAADVII
                     FNTCSVRERAAHKVFTRIGEVRRQRLNNEPVVGVMGCVAQLEGSALFDNSPAVNLIVG
                     TRATDRLPALIERALKGEQRVIDLDERADGEKWNVPATARTSKYVAFVPIIEGCNKFC
                     TYCIVPYSRGREVSRSASEIIQEIKELRDYGYREIHLIGQNVNSYRPTTEAGLEGFRG
                     ATLFCRLLRAVAATGIERIKFTTSFPRDFHPDIISAIDEHKNLCDWIHLPVQSGSDRV
                     LRAMRRGHTASEYLRRIDAIKNARRRIAITSDIIVGFPGETDTDFRDTMRLIEQVGYD
                     ALYIFKYSERPGTPAAKFADDVSNDEKKARFLELEELQQRLQQKIYANYVGREIQVLI
                     EGASSKSDRDMTGHSTCHKVVNFPRASATLGEVVSVRVTEAKVNSLYGEVMSNGVGLA
                     VSR"
     gene            2658..3149
                     /locus_tag="VHD88_09015"
     CDS             2658..3149
                     /locus_tag="VHD88_09015"
                     /inference="COORDINATES: protein motif:HMM:NF014618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional nuclease family protein"
                     /protein_id="HVS21975.1"
                     /translation="MEIEVKIRALMMDPNSGTPIIILKDVNSETMLPIWVGAYEANAI
                     ALEIEKIAPPRPMTHDLLRNLIVELGLKVDRVVVTSLRDNTFYAVIELTQEDGEAMRL
                     DSRPSDAIALALRADCPIFVDLEVIQASRNTIATDDESAAEDEGGEEEWPEVIGDASD
                     LPM"
     gene            3203..3958
                     /locus_tag="VHD88_09020"
     CDS             3203..3958
                     /locus_tag="VHD88_09020"
                     /inference="COORDINATES: protein motif:HMM:NF018290.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HVS21976.1"
                     /translation="MIIAIANQKGGVGKTTTAINLAAAFARRGTKTLLLDLDPQGNSS
                     ISFLDPLSIDRSAYDLMIDGQGASELPIYKTTVEGLDIVPARISLAKLESKLVGDFDA
                     PFRLKDRIEPLKKRYKVIVIDTPPTLGLITVNALVASTHVLVPIQSSYFALEGTDDLL
                     ETVEKVKARPNPGLEMVGVLVTLHDKRTTLGKEVYEQIRRVFGPKLFDTVITKSVRLE
                     ESPAYKESIFTFAPQSSGAIEYEKLCEEVMSRV"
     gene            3951..>4627
                     /locus_tag="VHD88_09025"
     CDS             3951..>4627
                     /locus_tag="VHD88_09025"
                     /inference="COORDINATES: protein motif:HMM:TIGR00180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HVS21977.1"
                     /translation="MSRRGLPTGLSMRHDAHYVEELTQGGPTHVGRLIPIDKLDPNPK
                     QPRTEIGDLTELTASIREKGVLEPLLVRPPRMGRWMIIAGERRWRAAKAAGLKELPCI
                     EMDVDDSAVAEIALIENMQRKDLTPWEEADGLRALCERFGYTHEDVARKVGKSRSTVT
                     EALSIASIPKSIREICRDSEISSKSLLLQIVRQPDDESMRTMAEQIAAQGLTRDGARK
                     ARRAFVDP"
BASE COUNT         1048 a         1231 c         1384 g          964 t
ORIGIN      
        1 cagcgccaac tgcgaaactt cggcatgcca aaacccgaag gctaccgcaa ggccatccgc
       61 gtgatgaagc tcgccgagaa gttcgggaga ccaatcttct gtttcattga cacgccgggc
      121 gcgtatccgg gcatcgacgc ggaagaacgc ggccaggctg aggccatcgc ttacaatctc
      181 cgcgaaatgg ccaagctttc ggtaccgata attgtaaccg tgatcggcga aggcggatcg
      241 ggcggcgcgc tggcaattgg cgttggtgat caagtgttga tgctcgaaaa tgcgatctac
      301 tccgtcatct cacccgaagg ttgtgcggcg atcctgtgga aggactccag ccaggctgcg
      361 cgcgcggctg aagagttaag gctcaccgct caagatttgt tcgccgaagg aatcgcggat
      421 cagataatca atgagcccac cggcggtgcg cagacttcgc atgatgaggc tgcgcggctt
      481 ttggatattg cgctttgcgc gaagctagcc gagtcaggga cgaacgatgc gcaggagcgc
      541 cttggtcggc gctatcggaa actgcgtcaa ttgggaaaat ggggcaccag cgacgcgggg
      601 atgaccgctt aagacatcgt gcccgttaag ttaacgggga cccgagcaac tgcaaatcaa
      661 aatggaatat cgtcgtcgct cagatcagtg ggttcggggg ctgcctcact cacggcggct
      721 gaggccttcg ctggagcggc gccggcttca tcgcctcttc ctcctccacc gataaactgc
      781 atgtcggtag cgtgaacttc caacgtgtgc cgtggttttc catcgcggtc agtccactct
      841 tccaccctta gccgcccttc gatgtacacc ggccggccac gtgtcagata ctgcgatgca
      901 gtttctgcct gccgtcccca aagcgtgacg cgaaaccagg tagtgatatc attgttttcg
      961 ccggtcgtgc gatctttgcg ccgttcgttt gtggccaggc tgaagctgca aacaggcgtc
     1021 ccctgcggcg tgtagcgcaa ttccgggtcg cggccgaggt tgccgacgag agtgatcttg
     1081 ttgaaagaca tttgcgttct ccagttagtc ttcgtccttc aaggagccag gagttgtaga
     1141 gcgagaggcc gatactactc gcagccgcga gacgcgtcaa gcaaagctga ctccatacca
     1201 gtgccatcga gatggcagag ttgatagaaa cgaccgagcg aaatctgtta gactctggcc
     1261 ggtacacaag gaagtgatga gcgcaactgt ttacgtcgaa acttttggct gccagatgaa
     1321 tgtcgccgac agcgaacgtg ccgcgcttcg tttgcgcgcc gcgggttttg atctcgccgg
     1381 atcgccgcaa gccgcggatg taatcatctt caacacttgc tcggtacgcg aacgagccgc
     1441 gcacaaagtc ttcacgcgga tcggcgaagt ccggcgacag cgcttgaata acgaacccgt
     1501 ggtcggagtg atgggctgcg tggcgcagct tgagggctcc gcccttttcg ataacagtcc
     1561 cgcggtaaat ctcatcgtcg gcacccgcgc gacagaccgg ctgcctgcat tgatcgaacg
     1621 cgcgctcaaa ggcgagcagc gtgtgatcga tcttgacgag cgggctgacg gcgagaaatg
     1681 gaatgtgccg gccacggcgc gaacgtcaaa gtacgtggcc tttgttccca tcatcgaggg
     1741 ctgcaacaag ttctgcactt attgcatcgt cccctattct cgcggaagag aagtcagtcg
     1801 ctcggcttcc gaaataattc aggaaataaa ggaactgcgc gattatggtt accgcgagat
     1861 ccatctcatt ggacaaaacg tcaacagcta tcggcccacg accgaggctg ggttggaagg
     1921 cttcaggggc gcgactcttt tctgtcgctt gttacgggcc gtcgcagcga ctgggatcga
     1981 aagaattaag ttcacaactt cgtttccgcg tgattttcat ccggacatca tttcggcgat
     2041 cgacgagcat aagaatcttt gcgattggat ccatctgccg gttcagtccg gcagcgatcg
     2101 cgtgctgcgc gcgatgcgcc gaggccatac cgcaagcgag tatctccgtc gaatcgacgc
     2161 aatcaaaaat gcacggcgcc ggatcgcgat tactagtgat atcatcgtcg gctttcccgg
     2221 cgagaccgat acagactttc gcgacacgat gcggttgatc gagcaggtcg gctatgatgc
     2281 actttacatc ttcaaatact cagagcggcc ggggaccccg gcggccaaat ttgccgatga
     2341 cgtaagcaat gatgagaaga aggctcgctt tctcgaattg gaggaactgc agcagcggct
     2401 tcagcaaaag atttacgcga actacgtcgg tcgagagatt caagttctga tcgaaggcgc
     2461 tagctcgaaa tcagatcggg acatgactgg tcattctact tgtcacaagg ttgtgaattt
     2521 tccgcgcgcc tcggcaacgc tcggtgaagt ggtgtcggtt cgggtgaccg aggcaaaggt
     2581 gaacagcctg tatggtgaag tgatgtcgaa cggcgtaggg ttggcggtgt cgcgatagag
     2641 gcaacagggt agggatcatg gaaatcgagg tcaagattcg cgcgttgatg atggatccga
     2701 acagcggcac tcctataatt attctcaagg acgtaaacag cgaaaccatg ctcccgatct
     2761 gggtaggagc ttacgaagca aacgccatcg ctctggagat cgaaaagata gcgccgccgc
     2821 gcccgatgac tcacgatctg ctgcgcaacc tgatcgtcga gctgggattg aaggtcgatc
     2881 gcgtagtcgt aacgtcgctg cgcgataaca ctttttacgc ggtcattgaa ctgacgcagg
     2941 aagacggcga agcgatgcgg ctcgattcgc ggccgtctga tgcaattgct ttggcgttgc
     3001 gcgcggattg ccctatcttt gtggatctcg aagttattca ggcgtcgcgc aacacgatcg
     3061 cgactgacga tgaaagcgca gcagaggatg aaggtggaga ggaagagtgg ccggaagtaa
     3121 tcggagacgc cagcgatctg ccgatgtgat tgtgaggtcg gccgcgccgg ctaaattctt
     3181 cggcgaggga aaacgacaga gagtgataat cgcaatcgct aatcaaaaag gcggagtcgg
     3241 caagaccacc acggcaatca acctcgctgc ggcgttcgcc cggcgtggaa cgaagacgct
     3301 tctcctggat ctggatcctc agggcaacag ttcaatttcg tttctggatc cgctctcgat
     3361 cgatcggtcg gcctatgact tgatgataga tgggcaggga gccagcgagt tgccgattta
     3421 caaaacgacg gtggaaggtt tggacatcgt tccggctagg attagtctgg caaaactcga
     3481 gtcgaaactg gttggtgatt ttgacgcgcc ctttcgcttg aaagatcgca tcgagccgct
     3541 taagaagcga tataaggtga ttgtcatcga cacgccgccg acgctcggac taattacggt
     3601 gaacgccctc gttgcttcga ctcacgtgct cgttccgatc caatcatctt actttgctct
     3661 tgaaggcaca gacgatttgc ttgaaaccgt cgagaaggta aaggcccgcc cgaatccggg
     3721 actggaaatg gtcggtgttc tggttacgct tcacgacaag cgcacaacgc tgggcaagga
     3781 agtttacgaa caaattcgcc gcgtctttgg gccaaagctt ttcgacaccg tgatcaccaa
     3841 gagtgtgcgg ctggaagaat cgccggctta taaagaatct attttcactt tcgcgccgca
     3901 gtcttcaggc gccatcgagt acgaaaaact ttgcgaagag gtaatgagtc gtgtctagaa
     3961 gaggcttgcc taccgggctc agcatgcgcc atgacgccca ctacgtcgag gaattgaccc
     4021 aaggtggtcc gactcacgtt gggcgattga ttccgatcga caaactggat ccgaatccaa
     4081 aacagccgcg cacggagatc ggcgacctca ctgaactcac cgcttcgatc cgcgagaagg
     4141 gcgtactcga gccgctgctg gtcaggccgc cgaggatggg ccgttggatg atcattgccg
     4201 gcgagcggcg ctggcgcgcg gccaaggcgg ctggcttgaa ggaactgccg tgcatcgaga
     4261 tggacgtcga tgatagcgcg gtcgccgaga ttgcgctcat cgagaacatg cagcgcaagg
     4321 atcttactcc gtgggaagaa gctgatggat tgcgcgctct gtgcgaacgc tttggttaca
     4381 cccacgaaga cgtggcccga aaggtgggga agagcaggag cacagtcacg gaagcgctat
     4441 cgattgcatc catccccaaa tcgatccgcg aaatctgtcg ggattcagag attagctcga
     4501 aatccctttt gctgcagatc gtcagacagc ccgacgacga gtccatgcgc acgatggctg
     4561 aacagattgc cgcgcaaggt ctgacgcgcg acggcgctcg gaaagcgaga cgggccttcg
     4621 tcgatcc
//
LOCUS       DASZZE010000466         5067 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_241215, whole genome shotgun sequence.
ACCESSION   DASZZE010000466 DASZZE010000000
VERSION     DASZZE010000466.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5067)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5067
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_241215"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(48..1163)
                     /gene="ald"
                     /locus_tag="VHD88_09030"
     CDS             complement(48..1163)
                     /gene="ald"
                     /locus_tag="VHD88_09030"
                     /EC_number="1.4.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000286 - alanine dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006522 - alanine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine dehydrogenase"
                     /protein_id="HVS21978.1"
                     /translation="MIVGLPKEIKDNEYRVGLTPAGVRALADAGHRVLVENKAGDGSG
                     FEDSLYARAGATIINAADDVWAEAEMIVKVKEPISPEYPRMRDGQLLFTYLHLAPDNE
                     LTEQLLKRKVTGVAYETITDRQGTLPLLTPMSEVAGRMAIQVGAHYLEKMSGGRGILL
                     GGVPGVPAARVVIIGGGVVGTNAAKIAVGMGAHVTIIDNNLDRLRELDDIFLSKIATL
                     ASSAYMIHDAVSQADLIIGAVLVPGAAAPKLVTRNMLKDVTDGAVVVDVAVDQGGCVE
                     TTRPTTHSEPTFYVEGVLHYCVANMPGAVPRTSTFALTNATLPYALKLANHGFQAAVA
                     SDPGLKAGVNTYAGKLTYEAVALSQGREYTSLDGLVS"
     gene            complement(1241..1858)
                     /locus_tag="VHD88_09035"
     CDS             complement(1241..1858)
                     /locus_tag="VHD88_09035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21979.1"
                     /translation="MLRPIRQEKTIVLKRRMFQAAACMLLASGALAQTSSQHFAKDGL
                     SFDYPAGWSMDESKSSGQMQYLMLGRDGYATIIVREPRGLVDTPEKEAHAKQLIQDGF
                     VDAWAKNFSDSGAKPERSTVPTEIAGGAAECTRLSASLSGEPGRVDVCWRLIEKRMVQ
                     LAIVGSARTITKTSPAWDAIRNSVKVEPPPQPKASPSPTPGKPLS"
     gene            2056..4056
                     /locus_tag="VHD88_09040"
     CDS             2056..4056
                     /locus_tag="VHD88_09040"
                     /inference="COORDINATES: protein motif:HMM:NF014427.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HVS21980.1"
                     /translation="MFQSRTIISIFLGAMFALAAFAQQPSPTPPASAVKTVEVKASAT
                     EAEVGQQVKLTVVAKDAAGNVVNEEPSTYFAGPFDIAAADDSGNVKLFGPGEVIAGAI
                     VGGKTGFTKFTVRPAKIKTVEIKSIATPLVVGSTVQLEAITRIFSGDPRTGVTLNWTS
                     DKPAIATVDAVGIVSGIAPGKATIKATAGAVNGMTTITVVKSNLRGLTIEAGATMART
                     GDVVHFTAKGSPSNDFTARWSVSGNGATIYPDGGFVAEQPGNYIVTASSGYLSASASI
                     SITPRDLERRLEVVGRAPFKEFQGAEEWIIGNYAYYSTITDRFLVYDISDPAHPKLTD
                     TVKVDARLVNDIMTTADGKILVISREGASNRKNGIAFYDTSDPAHPKLISEYTATVTG
                     GVHSAFVNGHCVYLTDDATGSMRVIDFADVKNPKEVARWQTENPIAGMIRTKEGEEIA
                     GRYLHDLYVKDGLAYLAYWHDGLVILDVGAGIKGGSPEHPQFVSQFRFNHNELYGNGW
                     LAGTHSVFRYRNYLFLGDEVLPSFFDITSHRRIPVRGICHVIDISDINNPRKVAEYPV
                     PEGGAHNIWVEDDVMYMGYYSGGGRVVDVSGELRGDLYRQGREIGRLWTGDPEGFRTN
                     LPFVWGAQPHGGLIYFNDINSGLWIVKLGPKIEKGSTTAPGQ"
     gene            4254..4685
                     /gene="tnpA"
                     /locus_tag="VHD88_09045"
                     /pseudo
     CDS             4254..4685
                     /gene="tnpA"
                     /locus_tag="VHD88_09045"
                     /inference="COORDINATES: protein motif:HMM:NF013921.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
     gene            complement(4726..>5067)
                     /locus_tag="VHD88_09050"
     CDS             complement(4726..>5067)
                     /locus_tag="VHD88_09050"
                     /inference="COORDINATES: protein motif:HMM:NF014312.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HVS21981.1"
                     /translation="VRRIPARAGVYNLAVTHDGTRLLATNKRDQSVSIFDLKSGKELA
                     RLPTKRKVLHGVVVTPDNRYAFVTVEGIGSEPGTVEIIDLDALKTVATVDVGPEAAGV
                     DFYKTEATGRP"
BASE COUNT         1098 a         1475 c         1407 g         1087 t
ORIGIN      
        1 gatgaactga ctagttgtct tgcgagtctc ctgtcaaata aatcagctta agaaacgagc
       61 ccgtcgagcg acgtgtattc gcgtccttga gacaaagcta ctgcttcgta agtcagtttg
      121 cccgcataag tattgactcc cgctttcaaa ccggggtcgc tggcgaccgc agcctggaat
      181 ccatggttcg caagtttcaa agcgtaaggc aacgtcgcgt tcgtcagcgc gaacgttgaa
      241 gtgcgcggca ccgcgcccgg catgttggcg acgcagtaat gcagcacgcc ttcgacgtaa
      301 aaagtcggtt ccgaatgcgt cgtgggacgc gtcgtctcaa cacagccgcc ttgatcgaca
      361 gccacgtcaa cgacgaccgc gccatcggtc acgtccttga gcatattgcg cgtgaccagt
      421 ttcggggccg cagcgccagg aaccagcact gcgccaatga tcaagtccgc ttgtgaaacc
      481 gcgtcatgaa tcatgtaagc gctcgatgcg agagttgcga tctttgaaag aaaaatgtcg
      541 tcgagttcgc gcagccgatc gagattgtta tcgatgatcg tcacgtgcgc ccccatgcct
      601 acggcgatct tcgccgcatt cgtcccgacc acgccgccgc cgatgatcac tacgcgcgcc
      661 gccggcacgc cgggcactcc gccgagcagt atgccgcgac cgccgctcat tttttccaga
      721 tagtgcgcgc cgacctggat cgccatgcgg ccggcgactt cggacatcgg cgtcagcagc
      781 ggcagcgtcc cttgtcgatc ggtgatggtt tcatacgcga cgccagtgac ttttcgtttg
      841 agtaactgtt ccgtgagttc gttatcagga gccagatgaa gataagtgaa gagcaactgt
      901 ccatcgcgca ttcgtggata ctccggcgag atcggttcct tcaccttgac gatcatctcg
      961 gcttcggccc aaacgtcgtc cgccgcattg atgatggtcg ctccggcgcg ggcgtacaaa
     1021 gagtcttcaa aacctgatcc gtcgcccgct ttgttttcca ccagcacacg atggcccgca
     1081 tcagccaacg cacgcacgcc ggcgggcgtc agaccgacgc gatattcgtt gtctttgatt
     1141 tctttcggca gtccaacaat cacttttctg ctccagagtt aaggctgcgt aatttcgatc
     1201 atcgtgacgc gcccagatac taccagagga cgcgcgagtc ttacgacagc ggcttgcccg
     1261 gcgtcggcga tgggcttgcc ttcggttgcg gcggcggctc gaccttcacg ctattgcgaa
     1321 ttgcgtccca ggccggcgat gtcttggtaa tggttctggc cgagccgaca atcgccaatt
     1381 gcaccatgcg tttttcgatc agtcgccagc agacatcgac tcggcccggt tcgccgctga
     1441 gcgaagcgct gagccgcgtg cattcagcgg ctccgccggc gatctcagtg ggcactgttg
     1501 accgctcagg tttagcgccg ctgtctgaaa aattcttggc ccatgcatcg acgaacccat
     1561 cctgaattag ttgtttggcg tgagcttctt tctcaggcgt atcaaccagc ccgcgcggct
     1621 cacgcacgat gatcgtcgcg taaccgtcgc gaccgagcat caggtattgc atctgacccg
     1681 aactcttgga ttcatccatg ctccagcccg ccggataatc aaaagagaga ccatccttcg
     1741 caaagtgctg gctcgacgtt tgcgcgagtg ctccgcttgc caacaacata cacgccgcgg
     1801 cctgaaacat tcttcttttc aacacaatcg ttttctcctg ccgaattggt ctgagcatct
     1861 tagcgtgttt tcatccattc gatacagcgc cgaacgtgcg cgggcatttg tgagtcgtga
     1921 tgaatgcgtc cgcgagacat gatgaagcac gacgcgcgcg agttcaagca ggtaacactg
     1981 cgaaggcttg cctcgtaatc gatccgcaat taacatgacg cgtagtcagc aaatcgatcg
     2041 tttcgggagg ccttcatgtt tcaatcgcgc acaatcattt ccatttttct tggcgcaatg
     2101 tttgcgctcg cagcattcgc acaacaaccc agcccaactc cgccagcttc cgcagtcaag
     2161 actgtagaag taaaggcgtc ggcaaccgaa gctgaagtcg gtcagcaagt gaagttgacc
     2221 gtcgtggcga aagacgccgc gggtaacgtc gttaacgaag aaccttcaac ctatttcgcc
     2281 ggtccgttcg acatcgccgc ggcggatgac agtggcaacg tcaaactctt cggcccgggc
     2341 gaagttatcg ccggcgcgat cgtgggcggc aagaccggat ttactaagtt cacggtcaga
     2401 ccggcaaaga tcaagacggt tgagatcaaa tcgatcgcaa ctccgctggt ggttgggagc
     2461 acggtgcaac tcgaagccat aacgcgaatc ttcagtggcg acccgcgcac cggcgtgact
     2521 ttgaattgga cctccgacaa accggcgatc gctacagttg acgcggtcgg aatcgtaagc
     2581 ggaatcgccc caggcaaagc tacgatcaag gccaccgccg gagccgtcaa cgggatgacg
     2641 acgatcactg ttgtgaagag caacttgcgc ggtttgacca tcgaagcggg cgcgaccatg
     2701 gcgcgcaccg gcgatgtcgt gcacttcacg gcgaaaggat cgccttcgaa cgatttcacc
     2761 gcgcgatggt cggtcagcgg caacggcgct accatctatc ctgacggtgg tttcgtagcc
     2821 gagcagccgg gaaactacat cgtcaccgca agcagcggct atctttccgc cagcgcttcg
     2881 atctcaatca cgccgcgcga tctcgaacgc cgcctcgaag tcgtcggccg cgcaccattc
     2941 aaagagttcc agggcgcgga agaatggatc atcggaaact atgcttacta ctcgacgatc
     3001 acagatcgat ttctggttta cgacatttcc gatccggcgc atccgaaact gactgacacg
     3061 gtcaaagtcg atgcgcgcct cgtcaacgac atcatgacga cggctgacgg taagattctc
     3121 gtgatctcgc gcgaaggcgc ttcgaatcgc aagaatggca tcgcatttta tgacacttcc
     3181 gatcctgctc atccaaaatt aatttccgaa tacaccgcca cggtgacggg cggcgtacac
     3241 agcgcgttcg tcaacggtca ttgcgtttac ctgactgacg acgcgaccgg ttcgatgcgg
     3301 gtaatcgatt ttgccgacgt gaaaaatccg aaagaagttg ctcgctggca gactgagaat
     3361 ccaatcgctg gcatgattcg cacgaaagaa ggcgaagaaa ttgcgggtcg ttacctccac
     3421 gatctttacg tgaaagacgg ccttgcctat ctcgcttact ggcacgacgg cttagtcatt
     3481 ctcgatgtcg gcgcaggcat caaaggcgga agccctgaac atccgcagtt cgtcagtcag
     3541 tttcggttca atcacaacga gctttacggc aacggctggc tcgccggcac gcactcggtg
     3601 tttcgctatc gcaattacct tttcctcggc gatgaagtgc tgccttcgtt cttcgacatc
     3661 acttcgcatc gacgcattcc cgtgcgcggc atctgtcacg tgatcgatat cagcgacatc
     3721 aacaatccgc gcaaagtcgc cgagtatccc gtgcccgaag gcggcgcgca caacatttgg
     3781 gtcgaagacg acgtgatgta tatgggttac tacagcggcg gcggtcgcgt cgtcgatgtt
     3841 tccggcgagc tgcgtggcga tctctatcga cagggccgcg agattggacg actctggacg
     3901 ggcgaccccg agggcttccg cacgaacctt ccgtttgtct ggggcgcgca accgcacggc
     3961 ggattgatct acttcaacga catcaactca ggcctctgga tcgtgaagct cggcccgaag
     4021 attgaaaagg gatcgacgac tgcacctgga cagtgatgat gagcgccgca cgtgcggcag
     4081 atgaaagctc gtgcaagcgt atcgcgaccg ctgaagagtg taaccggaca ttgagcgccg
     4141 gaggcgcggt agaaggtagc cagtggcaag cgcgcagcgc gcggccactg gtacacaaac
     4201 aaagatgaca acgcgccctg cgaggggcgc gcagaaatag aagggagact cccatgcccg
     4261 cgacttattg cagtcttcat taccacgccg tattcagcac gaaggatcgt tatccgacga
     4321 tcacaaagga ctggcgcgac aaccttcccg cctatctggg tggaattgtc aaacatcttg
     4381 gcggcttacc tgtcgcaatc ggaggcatcg aggatcacgc gcacgtttta atgggtttgc
     4441 gtgcaacgca tgccatcgcg aatgttatgc gtgaggtgaa aagcggatct tccgagtgag
     4501 tgcatgtcac ggttggtaag aaaaattttg gttggcaacc cggctacttc agcgtgactg
     4561 ttagtccgtc gcacattgag agagtcaagc aatacattct taatcaagag aagttggagc
     4621 tttccagtgg ccgcgcttcg cttgccactg gctaccatct tccgcgcctg cggcgctcaa
     4681 tctgaccttg catgcacgac ttacttgggg ttcggaagcc ctccatcacg gtcggcctgt
     4741 tgcctcagtc ttgtagaaat caactcccgc tgcttccggt ccgacatcaa ccgttgcgac
     4801 tgtcttcaag gcatcgagat cgatgatctc aacggtgccc ggttcggagc cgataccttc
     4861 tacggtcacg aacgcgtagc gattgtcggg tgtcacaacg acgccgtgca gaacttttcg
     4921 tttggtggga agacgagcga gttctttacc gctcttcaaa tcaaagatcg ataccgactg
     4981 atcgcgtttg ttcgttgcga gcagacgcgt gccgtcgtgc gtcacggcga gattgtaaac
     5041 gccggcgcgc gcgggaatgc gacgcac
//
LOCUS       DASZZE010000467         5008 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_16259, whole genome shotgun sequence.
ACCESSION   DASZZE010000467 DASZZE010000000
VERSION     DASZZE010000467.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5008)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5008)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5008
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16259"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..689
                     /locus_tag="VHD88_09055"
     CDS             <1..689
                     /locus_tag="VHD88_09055"
                     /inference="COORDINATES: protein motif:HMM:NF015587.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HVS21982.1"
                     /translation="PGSGKFLHDTIRSLSGISSGVMITCGVIVLWAGSWVFTVVERAL
                     NRIWGTTPRTFLHGRALTLGMIGIVGLLLSVSVLATSVLVGLQEFAERLSPRQLENFR
                     LLSSVGSVFWQIVFALASLLVTFTLFAIVYRFMPNAHVVLRDTIPGAVIGGLLWEAAK
                     YVFAWSLNYFHYDQIYGSVGAVVAVLTWGYVSSLVLLFGAQLTGVFYREHMEHPFAAP
                     IVNIASPSLS"
     gene            732..1769
                     /gene="queA"
                     /locus_tag="VHD88_09060"
     CDS             732..1769
                     /gene="queA"
                     /locus_tag="VHD88_09060"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: protein motif:HMM:TIGR00113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HVS21983.1"
                     /translation="MQLSDFDYELPEELIAQHPPAERDASRMLIVDRAKQDWQDSEFA
                     SLPEQLRADDVLVVNNTRVFPARLVGERVPTGGAVKLLLLREIEPKMWSALTRPARRL
                     RNGTRIKFGDSKLEAEVIESLDDGVRMIRFESDQPLEQVIDEIGQTPLPPYIKRRMGA
                     FDEDSERYQTVYASERGAIAAPTAGLHFTPRVFEEIASRGVRVVEITLHVGYGTFEPV
                     RVDDVSRHRVAPEWFSITDDAAQAINRARAAGGRVIAVGTTTTRALDSSSSSDGRINA
                     GSGFTELTIVPGYEFRVVNALVTNFHLPRSSLLMLVSAFAGRELILAAYRHAVGKGYR
                     FYSYGDSMLIT"
     gene            1879..2430
                     /locus_tag="VHD88_09065"
     CDS             1879..2430
                     /locus_tag="VHD88_09065"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HVS21984.1"
                     /translation="MAVLKKFRPKWWPNSRQVPYETGPANIALVPPINARYDLRPLTV
                     AQIDECWQLDQRCFVDGEAYSRDTFEYLLSAPESVSYRVVTQNSAMAGFVIGLLEPDH
                     TGHITTIGIAPEHRRRRLASCLMERAEDGFRRRNVRIVRLEVRAGNVPAQELYASLGY
                     SVTQRLRKYYSNGGDGLLLVKPI"
     gene            complement(2452..3036)
                     /locus_tag="VHD88_09070"
     CDS             complement(2452..3036)
                     /locus_tag="VHD88_09070"
                     /inference="COORDINATES: protein motif:HMM:NF012255.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase domain-containing protein"
                     /protein_id="HVS21985.1"
                     /translation="MTFINYASREINCKIVYYGPGLCGKTTNLQHIYDSTAPQAKGKL
                     ISLATETDRTLFFDFMPLELGTVRGFKTRFHLYTVPGQVFYEASRRLILKGVDGVVFV
                     ADSQEERMDANIEALYNLEENLRSHGYDLMKLPYVLQLNKRDLPNVISCCEITAELQR
                     KGEPVIEAVASNGVGVFDTLKAVAKQVLTELRRS"
     gene            complement(3079..3546)
                     /locus_tag="VHD88_09075"
     CDS             complement(3079..3546)
                     /locus_tag="VHD88_09075"
                     /inference="COORDINATES: protein motif:HMM:NF015232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="roadblock/LC7 domain-containing protein"
                     /protein_id="HVS21986.1"
                     /translation="MREQRYHQIKAVLARLRLDAAARLVVLVDKDGQQIAVHGELGDF
                     DTTSLASLAAGNVAATGGMAELIGEKEFPTLSHEGERESIHISVIGRVLLLVVFDERS
                     SLGLVKLRSKQVSHELAAAFAEIEHDSQLSASSGSLPFAEITDEEIDSLFSQS"
     gene            3925..4800
                     /locus_tag="VHD88_09080"
     CDS             3925..4800
                     /locus_tag="VHD88_09080"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HVS21987.1"
                     /translation="MSSLVAKSVKKVASRSGSRHSSATSSTRKRVIAGKSTRLKPATK
                     RSPAGKARARKATKVRSPKQRTKASISLAKRRGARTPSKAKKPTKVSRRVSAAQPKKV
                     AVRNALRAIKKSVALPPRKQVPPPQPTRDEAAALSAFEAAHKDFTRGRFAEARHQFRA
                     LVEKYPTVSEVTARARTYLAVAEARLRTELALPRDADSLYDRGVIELNRGEYVAAQEL
                     FERALRREPEAAHIHYGLAATRARLGAIDTALKSLKRALDLQPNLRIRAQRDHDLNPL
                     RSDPEFEQLVFAARG"
BASE COUNT         1077 a         1427 c         1366 g         1138 t
ORIGIN      
        1 atccgggctc tggcaagttt ctgcacgaca cgattcgttc actgtccggc atcagctcgg
       61 gagtgatgat tacctgcggc gtaatcgttt tgtgggctgg ctcatgggtc ttcaccgtgg
      121 ttgagcgcgc gctcaatcgc atttggggaa ctacgccgcg cacttttctt cacggccgcg
      181 cgctgacgtt ggggatgatt gggatcgtcg gacttctgct ttcggtgtcg gtcctcgcga
      241 cttccgttct cgtcggtttg caagaatttg ccgaaaggct ttcaccgagg caactggaaa
      301 actttcgtct gctatcgtcg gtcggcagcg tgttctggca gatcgttttc gcgctcgcca
      361 gtttgcttgt cacctttact ctgttcgcga tcgtttatcg ctttatgcca aacgcccacg
      421 tggttttgcg cgacacaata cccggcgcgg tcatcggcgg cctgctctgg gaagccgcaa
      481 agtacgtctt cgcgtggagt ctgaattact tccactacga tcagatctac ggctcggtcg
      541 gcgcggtagt cgcagtgctg acgtggggct acgtctccag cctggttctg ctgttcggcg
      601 cgcaactgac gggtgtgttt tatcgcgagc acatggagca tccatttgca gcgcccatcg
      661 tcaatatagc ctcgccttcg ctttcctgat tcgctaggaa ctctacccaa agaattcgaa
      721 cgtcttcatc gatgcagctt tccgatttcg actatgaact ccctgaagag ttgatcgcgc
      781 agcacccgcc ggcagagcgc gatgcttcgc ggatgctgat tgtcgatcgc gcaaagcaag
      841 actggcagga ttcggagttt gcttcactac ctgagcaact gcgcgccgac gatgttctcg
      901 ttgtcaacaa tactcgagtg tttccggccc gtttggtggg cgaacgagtg ccgacaggcg
      961 gcgcggttaa acttttgctg ctacgcgaaa tcgaaccaaa gatgtggtct gcgctcacgc
     1021 gtccggcgcg ccgattgcga aatggcaccc gaatcaagtt tggcgattca aagctcgagg
     1081 ccgaggtgat cgagtcactc gacgacggcg tacgcatgat cagattcgaa tcggatcagc
     1141 ctctggagca ggtcatcgat gagattggcc aaactccgct gcctccttat atcaagcgcc
     1201 gaatgggtgc gttcgatgag gacagcgagc gctatcagac agtttacgcg tcagagcgag
     1261 gcgcgattgc tgcgcccaca gccgggttgc attttactcc ccgcgtattc gaagaaatcg
     1321 catcgcgtgg cgtgcgggtt gtggaaatca ctttgcacgt tggctacggc acatttgagc
     1381 cagtgcgagt agacgatgtc agccggcatc gcgttgcgcc cgaatggttt tcgatcaccg
     1441 acgacgcagc gcaagcgatc aatcgagcgc gcgccgcggg cgggcgtgtc atcgcagtcg
     1501 gcacgactac gacccgcgcg ctcgactcat cttcatccag cgatggccga attaacgcag
     1561 gttctggctt tactgaactc actatcgttc caggctacga atttcgagta gtcaacgccc
     1621 tcgtcacgaa ctttcacttg ccgagatcgt ctttgctgat gttggtaagt gccttcgccg
     1681 gtcgtgagct gattctcgcg gcgtatcgac acgcagtggg caaaggctat cgcttctata
     1741 gctacggcga ttccatgctg atcacgtgat ttagtctcaa acaaaccgaa gacgattctt
     1801 atgacgtgac ggagcgaaag taaccggcta taatctccgc cacgcttttc agcttcgcag
     1861 tggatcggca gtcgagttat ggcagttctt aagaagtttc gtccgaaatg gtggccgaat
     1921 agtcggcaag tgccctacga aacaggtccg gcgaacatcg cgctggtgcc gccgataaac
     1981 gcgcgctacg atctgcgccc gctcaccgtt gctcaaatcg atgagtgttg gcaactcgat
     2041 cagcggtgtt ttgttgacgg ggaagcttac agccgggaca cttttgaata tcttctctcc
     2101 gcacctgagt ctgtttccta tcgagttgtc actcagaaca gcgccatggc cggctttgta
     2161 atcggcttgc tcgaacccga tcacaccggc cacattacca ctatcgggat cgcacccgaa
     2221 catcggcgcc gccgtttagc aagttgcttg atggaaaggg cggaagacgg ttttcgccgg
     2281 cgtaacgtgc gcatcgttcg gctggaagtc cgcgcaggca acgtcccggc ccaagagctt
     2341 tacgcgagcc tgggttactc cgtgacacag cgtctgcgaa aatactactc gaacggtggc
     2401 gatgggctgc tgttggtcaa gccgatctag tcacgtccag caagactagc tctaacttct
     2461 acggagctcg gtaagtacct gcttagctac cgccttcagc gtatcgaaca caccgacgcc
     2521 atttgaagcg accgcctcga tgactggctc gcctttccgc tgcaactccg cggtgatttc
     2581 acagcaactt attacgttgg gcagatctcg cttgttgagc tggagcacat aaggaagctt
     2641 catcaagtcg tagccgtggc tccgtaaatt ctcctcaagg ttatagagag cttcgatgtt
     2701 cgcatccatt cgctcttcct gcgagtcagc gacgaagact acgccatcaa cgcctttcag
     2761 aataagtctg cgcgacgctt catagaatac ttgaccggga actgtgtaca gatgaaagcg
     2821 ggtcttaaag ccgcgaaccg tacccaattc cagaggcatg aaatcgaaga acagcgtgcg
     2881 atcggtttcg gtcgccagac taattagctt tcccttcgcc tgcggggcag tcgaatcgta
     2941 aatgtgctgc aggttggtcg tcttgccgca gaggcccgga ccgtaataaa cgatcttgca
     3001 gttgatttct cgcgatgcgt agttgatgaa cgtcatagga cttgatcggc tactagtcgg
     3061 cgggactcaa agtggatcct aactttgtga aaacaggctg tcgatctcct cgtcggtaat
     3121 ctcggcgaaa ggaagcgagc cgctagaggc tgatagttgc gaatcgtgct cgatctcggc
     3181 gaacgccgcc gccaattcat gcgatacctg cttggagcga agcttcacca aaccgaggct
     3241 tgatctctca tcaaacacaa cgagcaacag tacacgcccg atgacgctga tgtggatact
     3301 ctctcgctcg ccttcgtgcg acagagtcgg gaactccttt tccccgatca gctccgccat
     3361 gccgcccgtg gccgcaacat ttcccgctgc cagggaagcc aagctcgtgg tatcaaagtc
     3421 tcccaactct ccatgcacag ctatttgttg gccgtctttg tccaccagca cgaccagccg
     3481 agcagccgcg tccaggcgaa gtcgcgccag aactgccttg atctggtggt agcgctgttc
     3541 gcgcattagg atcggacttt cggccattga gacccttcag atggactcag aatcaaaaga
     3601 ggaggcaggt ttaccagttt cgaagctggc cgtcggcgct ccggcaaaca ggtaacaaca
     3661 aaagctgtgg attgagcgac gcgttcattg ctcagcagtc aagaacagac tgccgagcct
     3721 caccgagtca cattaacacg gcgcttcgca ggccatcaag tgtttttcgt tacttgccat
     3781 tgcctgccgg agttgaacac caagcgtagt gttaaccgca aaccctattc tttcgttgaa
     3841 ttaggcacaa acctatgcta agctgccacg acgcttttta cggcgatttt tctagcgatg
     3901 tctttgaaaa cgagggctcc acgcatgagc agtcttgtcg ccaagagcgt gaagaaagtt
     3961 gcgtcacgct ctggctcgcg ccattcgtcc gcgacatcat cgacccgcaa gcgggttata
     4021 gcgggcaagt caacacgtct gaaaccggcc accaaacgtt cgccggcagg aaaggcgcgt
     4081 gctcgcaagg cgaccaaggt tcgatccccc aaacaaagga ctaaggcttc aatatccctc
     4141 gcgaaacggc gcggtgccag gacgccgagc aaggctaaga agccgacgaa ggtcagtcgt
     4201 cgcgtttcag ccgcacagcc caaaaaggtc gctgttcgca acgcattaag agctattaag
     4261 aaaagcgtcg ctcttccgcc tcgaaaacaa gtaccaccac cacaaccgac gcgcgacgag
     4321 gcggcagccc ttagcgcatt cgaagcggca cacaaggact tcacgcgcgg acggtttgcc
     4381 gaggcccgcc atcagtttcg cgcgcttgtc gaaaagtatc ctacggtttc tgaagtgacg
     4441 gctcgcgcgc ggacttatct tgccgtggct gaggctcgct tgcgaactga gcttgcgctg
     4501 ccgcgtgacg ctgattctct ttatgatcga ggcgtcattg aattgaatcg tggtgagtat
     4561 gtcgccgctc aggagctttt cgagcgagcg ttaaggcgag agccggaagc cgcgcacatc
     4621 cactacggac tggcggcgac gagggcgcgt ttgggcgcga tcgatactgc gctgaaatca
     4681 ttaaaacgag cgcttgatct tcaaccgaac ctccgaatcc gagcccagcg cgaccacgat
     4741 cttaatcctc tccgcagcga tcctgaattc gagcaattag tgtttgcagc ccgcggctag
     4801 tgatggttcg gctccctctc ctcctggccc cggcaccacc ggtcgccatg aaaaaccaac
     4861 acagtttcag aacactgccg tttcgtctaa actgttagaa tgcgatcacg tttcaggtat
     4921 catctgccgc caggcatcac agaatcacac cggagaaaca cttgcagaac gtggacacga
     4981 atcgtagcct gaagcttgtt gctatcgg
//
LOCUS       DASZZE010000468         2183 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_307537, whole genome shotgun sequence.
ACCESSION   DASZZE010000468 DASZZE010000000
VERSION     DASZZE010000468.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2183)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2183)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2183
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307537"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1664
                     /locus_tag="VHD88_09085"
     CDS             <1..1664
                     /locus_tag="VHD88_09085"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="RecQ family ATP-dependent DNA helicase"
                     /protein_id="HVS21988.1"
                     /translation="KDQVDALTASGVAATFLNSSLRADESRARLRGLHQGEYRLLYVA
                     PERMMLSGFLSDLQRWKVNLIAIDEAHCISEWGHDFRPEYRQLAELRKRFPETPVMAL
                     TATATKRVQSDIVKQLRLRTPGRYIASFDRPNLTYHVLPKNNSYRQLLEFAKTRPGDS
                     GIVYCQSRRSAESLAERLNEDGIEAKPYHAGLDAKTRATNQELFLRDEVRVICATIAF
                     GMGINKPNVRFVVHYDMPKNVEGYYQETGRAGRDGLPSECLLLFSAGDAVKYSKFIDE
                     VSDEQERKIARQQLRRMVELAEGAECRRVALLRYFGEEFREPSCGACDNCMTPRETYD
                     GTVEAQKFLSCVYRVREKSGFDFGVNQIAEVLTGAETEKILKWDHQTVSTYGIGKEHS
                     QAEWKLIGRELVRLGYLSQLAERFNVLQVTDEGWRALKQRQPIRLVKPIAPPKPEKFR
                     AEKHRVEKVRARSHRAGEIDCDEALFDRLRRLRKRLADERGVPPYIVFSDVSLRQMAR
                     YYPSNESEFARINGVGERKLTEFGRSFITEIEAHLRKNPRRAFDG"
     gene            1657..>2183
                     /locus_tag="VHD88_09090"
     CDS             1657..>2183
                     /locus_tag="VHD88_09090"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HVS21989.1"
                     /translation="MDDVPLGARKNMHEIFGPQGLISKAHPEYEHRPGQIEMAEAVLR
                     AFEQKHHLIVEAGTGTGKTLAYLVPAIAAACGSGARVVISTGTKNLQEQLIDKDIPFL
                     HDVLPKQFRAAVMKGRNNYACLHRIRGAESMPVLAGLEEIDQFDEVARWVRETETGDR
                     AELSTLPENLPFWRH"
BASE COUNT          498 a          591 c          651 g          443 t
ORIGIN      
        1 tgaaggatca ggttgatgcg cttacggcca gtggtgtggc ggcgacgttt cttaattctt
       61 cgctcagggc ggatgaatcg cgcgcgcgtc tgcgtggctt gcaccagggt gaatatcgcc
      121 tgctctatgt cgcgcctgag cgaatgatgc tctccggttt tctttccgat ctgcaacgtt
      181 ggaaggtcaa tctgatcgcc atcgacgaag cgcattgcat cagcgaatgg ggccacgact
      241 ttcgtcccga atatcgtcag cttgcagagt tgcgcaaacg atttcctgaa acgccggtga
      301 tggcgctcac ggctacggca accaagcgcg ttcagagcga tatcgtcaaa caacttcgct
      361 tgcgcacacc gggccgctat atcgccagtt tcgatcggcc caatctcacg tatcatgtgt
      421 tgcccaaaaa caattcatac cggcaacttc tggaattcgc gaaaacgagg ccgggcgaca
      481 gcggaatcgt ttactgtcaa agccgtagaa gcgcggagag tttggcagag cgtttgaacg
      541 aagacgggat agaggcgaag ccttatcacg ctggcctcga tgcgaaaacg cgcgcgacta
      601 atcaggaact attcctgcgc gacgaggttc gcgtcatttg cgcgaccatc gccttcggca
      661 tgggcatcaa caagccgaat gtccgcttcg tcgttcatta cgacatgccg aagaacgtcg
      721 agggctacta tcaggaaact ggccgggccg gccgcgatgg attgccaagc gaatgtctcc
      781 tgctgttcag cgccggcgat gcggtcaaat attcgaagtt catcgacgaa gtatccgacg
      841 agcaggaacg aaagattgcc cgacagcaac tgcggcggat ggttgaattg gccgagggcg
      901 ccgaatgccg gcgcgtcgcc ttgctccgct actttggcga agagtttcgc gaaccgagtt
      961 gcggcgcctg cgacaactgc atgacgccgc gcgagactta tgacggcact gtcgaagcgc
     1021 agaagtttct ctcgtgtgtt tatcgcgtgc gcgaaaagag cggattcgat ttcggcgtca
     1081 atcaaattgc cgaagtgctg accggggccg aaacggaaaa gattctgaag tgggaccacc
     1141 aaacggtttc aacttacggc atcggcaagg agcacagcca ggccgaatgg aaactgattg
     1201 gccgtgagtt ggtgcgcctc ggttacctga gccagttggc tgaaagattc aatgtcttgc
     1261 aagtcaccga cgaaggctgg cgcgcgctca agcagcgcca gccgatccgc ctcgtcaagc
     1321 caattgctcc gccgaaacca gagaagtttc gggcggagaa acatcgggtc gaaaaggttc
     1381 gcgcgcgaag tcaccgtgcg ggagaaatcg attgcgacga agcattgttc gaccggttgc
     1441 gccggctgcg taaaagactc gccgatgagc gaggcgtgcc gccttatatt gttttctctg
     1501 acgtttcgct gcgccagatg gcgcgatact atccatcgaa tgaaagcgag tttgctcgca
     1561 tcaacggtgt tggagagcgt aagctgacgg agtttggaag gtcattcatt accgagatcg
     1621 aagcgcattt gcgcaagaat ccgcgccgag cttttgatgg atgatgtacc attgggggca
     1681 cgaaagaaca tgcacgagat ctttgggccc cagggtctga tcagtaaggc ccatcctgaa
     1741 tacgaacatc ggcccggcca gatcgagatg gctgaggcag tgctgcgtgc gttcgagcag
     1801 aagcatcact tgatcgtcga agccggcacc ggcacgggca agacgctcgc ttacctggtg
     1861 cccgcaatcg cggccgcgtg cggcagtggc gcgcgcgtag tcatctccac cggcacaaag
     1921 aatctgcaag agcaactcat cgacaaagac attccttttc ttcacgacgt tttgccaaaa
     1981 cagtttcgcg ccgcagtcat gaagggccgc aacaactacg cgtgtttgca tcgcatcagg
     2041 ggcgccgaga gcatgcccgt gctcgcaggc ctcgaagaga tcgatcagtt tgacgaagta
     2101 gcgcgttggg ttagagaaac cgagacaggc gatcgcgccg aactctcgac cttgccggag
     2161 aacctgccgt tctggcggca cat
//
LOCUS       DASZZE010000469         3812 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_48486, whole genome shotgun sequence.
ACCESSION   DASZZE010000469 DASZZE010000000
VERSION     DASZZE010000469.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3812)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3812)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3812
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48486"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..330
                     /locus_tag="VHD88_09095"
     CDS             <1..330
                     /locus_tag="VHD88_09095"
                     /inference="COORDINATES: protein motif:HMM:NF015129.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21990.1"
                     /translation="ELLAVNQAAVLYSPLPRFPAITRDVSLLLDRKTTVAELLRAAND
                     RQVDNFLGAKFVGTYQGEGIPEGKRSVTLRFEYRAADRTLRDEEVDELHWPLVKALQE
                     EFTAEVR"
     gene            414..680
                     /locus_tag="VHD88_09100"
     CDS             414..680
                     /locus_tag="VHD88_09100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21991.1"
                     /translation="MVALNGLEKFSHLEDKIYRTIELTKTLRQEKDELERKLATVRNL
                     GGGKQELVAQIERLLAEREAIRIKVEAMLEAVAATDTEIGETRG"
     gene            677..1036
                     /locus_tag="VHD88_09105"
     CDS             677..1036
                     /locus_tag="VHD88_09105"
                     /inference="COORDINATES: protein motif:HMM:NF017016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000917 - division septum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HVS21992.1"
                     /translation="MSSEAIGLDRGADNVAPTIKVEIYDQSYTIRSDGDSEYIRQLAE
                     YVDQRMREISSGTLTVDSRKVAILAALYIADELHQLKKMHEQADEQLASRSAECSEML
                     DRLLKVPRILDRPTATS"
     gene            1199..1384
                     /gene="ssrS"
                     /locus_tag="VHD88_09110"
     ncRNA           1199..1384
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="VHD88_09110"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            1486..2271
                     /locus_tag="VHD88_09115"
     CDS             1486..2271
                     /locus_tag="VHD88_09115"
                     /inference="COORDINATES: protein motif:HMM:TIGR00282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00282 family metallophosphoesterase"
                     /protein_id="HVS21993.1"
                     /translation="MNILMIGDVVGKPGRLALLDRLQDLKEQHAIDLTIMNAENVAGG
                     FSITPALADYLFANGIDVMTSGNHIFDKHEVIDYIEKQPRLVRPANYPPKTPGKGMWV
                     GQVKGTGVAVFNLLGRVFMHPSADDPFRVAEELLASLSADVRVRIVDMHAEATSEKIA
                     MGWFLDGRVSAVLGTHTHVQTADERILQQGTAFLTDLGMTGSYSGVIGMKKGDVLARF
                     TSAIHRKTEHSKGDLRICGAVIDVDDETGRARGIVRINLSHEP"
     gene            complement(2272..2757)
                     /locus_tag="VHD88_09120"
     CDS             complement(2272..2757)
                     /locus_tag="VHD88_09120"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF024675.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HVS21994.1"
                     /translation="MNPANEDILTERHETLLRVRYAETDKMGVVYYANYLVWFEIGRT
                     EFCRARGFSYRDMEENENAFLVVAESYCRYKAPAYYDDELLVRTHITELRRRALRFGY
                     EILRVPDGTIIAEGETGHVVTDSTGRVRSLPPGFAELLLSPPTDSIEPGELVPEDEGP
                     G"
     gene            2875..>3812
                     /locus_tag="VHD88_09125"
     CDS             2875..>3812
                     /locus_tag="VHD88_09125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21995.1"
                     /translation="MSKQIRFGPEAPATPRTERRHPAGIWLVSLFIVALLFAPSLLTQ
                     AGLAQRPAVGNATSHNAAVVAATDAVLKETSEIRQLSILRPVKSGTQARAEIERSVVK
                     NLDEDMTPAEAHTSEVVLKKLGLAPAEFQYRDLMIRLLTEQVAGYYDPKTQQFYLADW
                     IDIDGQKPIMAHELTHALQDQHFNLCRFEHWPKGDSDAELAAHALIEGDATVTMMLYM
                     ANDPMRALAFLKSLGAKGTASEELDKAPRALRETLLFPYQEGAEWTRSLYKRGGWNEV
                     SQAFTTLPQSTEQVMHPEKYFSHEAPVKVSIPDVSN"
BASE COUNT          894 a         1020 c         1081 g          817 t
ORIGIN      
        1 gagttgctcg cggttaacca agcggcggtg ctgtattcac cattgcctcg gtttcccgca
       61 attacgcgag atgtttcgtt gctgctcgat cggaagacaa ctgtcgccga gttgctgcgc
      121 gcggccaacg ataggcaagt cgataacttt ctgggcgcga agtttgttgg cacttatcaa
      181 ggtgaaggca tccccgaagg taagcgttcg gtaacgttgc gcttcgaata tcgcgcggca
      241 gatcgaactc tgcgcgacga agaggtggac gaactccact ggccgctcgt caaggctttg
      301 caagaagagt tcactgccga agttcgttga tgaagaaaac cgtaaaagag tcttgcactc
      361 atccgcgcga agtcggataa tcggtcggac gcacgacaga ctgggagata acgatggtgg
      421 ccttgaacgg actggaaaag ttttcgcacc tcgaagacaa aatctatcgc acgatcgagc
      481 tgacgaaaac tctgcgccag gaaaaggacg agttggaacg aaagctggcc acggttcgca
      541 acctgggcgg aggcaagcag gaattggtgg cgcagatcga gcgtttgctc gcggaacgcg
      601 aggcaattcg aatcaaggtt gaggccatgc tcgaagcagt ggccgcgacg gacacggaaa
      661 tcggggagac acgcggatga gcagcgaagc gattggtttg gacagaggcg ctgacaacgt
      721 cgcgccgacg atcaaagtcg agatctacga tcagtcgtac accattcgct cggatggtga
      781 ctccgagtac atcagacaac tggccgagta cgtcgatcag cggatgcgcg agatttcgtc
      841 cggcactttg actgttgatt cgcgaaaggt tgcgatcctt gcggcgctct acattgctga
      901 tgagcttcat caactcaaga aaatgcacga gcaagcggac gagcaactgg caagccgaag
      961 cgccgagtgt tcggagatgc ttgatcgtct gctgaaagtt ccgcgcatcc tcgatcgtcc
     1021 gacggccacg tcataacaca gaccctcaca gaaggtgttt agagtaccaa ctttagttgg
     1081 gttctctcct actggcaaaa agcccgacta aagtcggtac tttgaacgcc tttgattcaa
     1141 cgccaacact tcgctaacga cccattgagt tttgtgttac tatcgccgcg gcagagggaa
     1201 gtttctgcgg ggttcgtcac cgattaagat gattgagcca acgtcgttca aaagggagat
     1261 cgacgccacg cgctagtgcc tttcttcatc gttaagaaat gccgacagct tgcggcgaaa
     1321 aaaaggtcac ccacctgtca actcaggttc aattacgact tcggaacggc tcggcggttt
     1381 tccctctgtc atttgttgtg acaagtgaca agtgacgagt gacaagagaa atgacggaag
     1441 ctgatcttct tgtcacttgt caccggtcgc ttgtcacttt ttcttatgaa catcctgatg
     1501 attggcgacg tagtgggcaa gccgggccgg ctggctttgc tcgatcgctt gcaggatctg
     1561 aaagaacagc acgcgatcga tctcacgatc atgaatgccg aaaacgtggc cggtggtttt
     1621 tccatcacac cggcgctcgc ggactacctc ttcgccaacg gcattgatgt gatgacttcg
     1681 ggcaatcaca tctttgacaa gcacgaagtc attgattaca tcgagaagca accgcgactg
     1741 gttcgccctg caaattatcc tccgaagacg ccgggcaaag gcatgtgggt tggtcaagtg
     1801 aagggaaccg gagtggccgt cttcaacctg ctcgggcgcg tcttcatgca cccatcggcc
     1861 gacgatccgt ttcgggtcgc tgaagaatta ctcgcttcgc tttctgctga cgttagggtg
     1921 cgaatcgttg acatgcatgc tgaagctacc tcggaaaaga tcgcgatggg ctggttcctg
     1981 gacgggcgcg tttcggcggt gctcggcaca cacacccacg tgcaaactgc cgacgagcga
     2041 atcttgcagc agggcactgc gttcctgact gatttgggaa tgacgggcag ttattccggc
     2101 gtgatcggga tgaagaaagg cgacgtgctc gcgcgattca cttcagcgat tcaccgtaag
     2161 actgagcatt caaagggcga tctacgaatc tgcggcgcgg tgattgatgt cgatgacgag
     2221 acaggacggg cgcgcgggat tgtgagaatc aatcttagtc acgaaccgta atcagcccgg
     2281 tccttcatct tccggaacca gttcaccggg ctcgatcgaa tccgtgggtg gagaaagcag
     2341 caactcggcg aatccaggcg ggagcgaacg cacgcgcccc gtcgaatcag ttacgacatg
     2401 gccagtttcg ccttccgcga tgatcgtgcc gtccggaacc cgcaaaatct cgtagccgaa
     2461 tcgcagcgca cgtcgtcgca gctcggtgat gtgcgttctc accagcaact catcgtcgta
     2521 gtaagccggc gccttgtagc gacaataact ttcagcgacg accagaaacg cgttctcgtt
     2581 ctcttccata tcgcgataag aaaagcctcg cgctcggcag aactcagtgc gacctatttc
     2641 gaaccagact agataatttg cgtaatagac cacgcccatc ttgtccgttt ccgcatagcg
     2701 cacgcgcaag agcgtttcgt gccgctcggt cagaatgtct tcattggcag gattcatcaa
     2761 cgatgacttc tcctccgaca ttcaacaaat cagtaccacc tgcaatcgcg ggcgggttga
     2821 gtcgtttgtt gaattgccag tcgttttagc ggactataag gacgaaagat gaggatgtca
     2881 aagcaaattc gatttggacc cgaagcgccc gcaaccccgc gtaccgaacg caggcatcct
     2941 gccggtattt ggctggtttc tcttttcatt gtcgcgctct tgtttgcgcc gtcgcttttg
     3001 acgcaggcgg gcctggcgca acgacccgcg gttggcaacg cgacctcgca caacgctgca
     3061 gtggtggctg cgaccgatgc agtccttaaa gaaaccagcg agattcgaca gctttcaatt
     3121 cttcgcccgg ttaagagcgg cacacaagcg cgggcggaga tcgagcgctc cgtcgtcaag
     3181 aacctcgacg aagacatgac gccggccgaa gcgcatacca gcgaagtcgt tttgaaaaag
     3241 ctgggtttgg cgccggccga gtttcagtat cgcgacctga tgattcgcct gctcactgaa
     3301 caagtcgcgg gctattacga tccgaagaca cagcagttct atctcgctga ctggatcgac
     3361 attgacggcc agaagccaat catggcgcac gaactcacgc acgctttgca agatcagcac
     3421 ttcaacttgt gccgcttcga gcattggccc aaaggcgatt cggatgccga actcgccgcg
     3481 cacgctttga tcgaaggcga cgcgacggta acgatgatgc tctacatggc aaacgaccca
     3541 atgcgcgcgc tggcgtttct aaagtctttg ggagcgaagg gcacggcgag tgaagagttg
     3601 gacaaagcgc cgcgcgcgct gcgcgagaca ctgctgtttc cttatcagga aggcgctgaa
     3661 tggacgcgga gcttgtacaa gcgtggcgga tggaacgaag tctcgcaggc tttcacgacg
     3721 ctgccacagt cgacggaaca ggtgatgcat ccggaaaaat acttctccca cgaagcgccg
     3781 gtcaaagtta gtattcctga cgtttctaac tt
//
LOCUS       DASZZE010000470         1784 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_48707, whole genome shotgun sequence.
ACCESSION   DASZZE010000470 DASZZE010000000
VERSION     DASZZE010000470.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1784
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48707"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..531
                     /locus_tag="VHD88_09130"
     CDS             <1..531
                     /locus_tag="VHD88_09130"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006635 - fatty acid beta-oxidation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase family protein"
                     /protein_id="HVS21996.1"
                     /translation="EHIRANATIEDLRKLQPVFSKDGSVTAGNSSGITDGAAAVTVMS
                     EAALKASGTEPLALIVDYEIVGVPPEVMGIGPVPAVRSLLERQELSLGEIDLIEINEA
                     FAAQVIACDRDLKFDPDRLNVNGGAIALGHPIGCTGVRITTTLLHEMKQRQAKRGLAA
                     LCISGGMGIALLVERV"
     gene            620..1636
                     /locus_tag="VHD88_09135"
     CDS             620..1636
                     /locus_tag="VHD88_09135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21997.1"
                     /translation="MNKKVLTSSLALAFLLLNLVSTSSPRSLARTPSMRPAPPVDVLS
                     YLPVSDAVAVIDVHRLLTEALPRIFSGDPAKLLQVNSEIDKFKTRTGIDPRTFDRVAL
                     SLRYTYPSATITKIETVAIAHGTFDARALVAAGRSAASGRYREVSHHGATIAVFNIGD
                     QIKFLGLWNMKVNELAVCALDRNTLAIGTLPNVRAAIEAGKSGRASSDLVALATQDPN
                     ALIGFGGNVTSELLKNLNVGNDAIAKDANSIRQVYGSIGMTEKDFRLLLVARAATAAD
                     ARNLSDTVTGLRQLGGILISRMAPAKKNLAQSALDSLKITTRANELEIRTQFAAADLS
                     AFLK"
BASE COUNT          392 a          482 c          558 g          352 t
ORIGIN      
        1 gaacacatcc gcgcgaacgc aacgattgaa gacttgcgca agctacagcc ggtgttttcg
       61 aaagatggca gcgtaaccgc cggaaattct tcgggcatca ctgacggggc ggcggcggtc
      121 acggtgatga gcgaagcagc tttgaaagcg tctgggactg agccgctggc gctaattgtc
      181 gattacgaaa ttgtcggcgt gccgcccgag gtcatgggta ttggtccggt gccggcggtg
      241 cgctcgctgc tcgaaagaca ggagctttcg ctcggagaaa tcgatctgat cgagatcaac
      301 gaagcattcg cggcgcaagt catcgcgtgc gatcgcgatc tgaaattcga tccggatcga
      361 ttgaacgtaa acggaggcgc gattgcacta ggtcatccca tcggttgcac cggagtgcgt
      421 attacgacca cgttgctgca tgaaatgaag cagcgccagg ccaaacgcgg tctggcagcc
      481 ttgtgcatca gtggcggcat gggcatcgct ttgctcgtcg agcgcgtgta gactatcggt
      541 ctccggccaa ccaggcggcg ccgcagacgc atcgcagaag cgcacacttg aaagcaatat
      601 gaagagaggg cttcgcatcg tgaacaagaa agttctgact tcgtcactag cactggcgtt
      661 tcttttactc aatctagttt cgacttccag cccgcgctcg ctggcgcgaa ctccatcaat
      721 gcggcctgcg ccgccagttg acgtgctgag ttacttgccg gtatcggacg cggtcgcggt
      781 aattgacgtg catcgcctgc tgactgaagc attgccgcga atattttcgg gcgatccggc
      841 aaaactgctg caagtgaatt ccgagataga caaattcaag actcgcacgg ggatcgatcc
      901 gcgcacgttc gaccgtgtgg cgctgagcct gcgttacact tatccttccg cgacgattac
      961 gaaaatcgag acggtggcca tcgcgcacgg aacgttcgac gcccgggcgc tggtcgctgc
     1021 cggacgcagc gcggccagcg gcagatatcg cgaagtgagt catcacggcg cgacgatcgc
     1081 ggttttcaat atcggcgatc agatcaagtt cctcgggtta tggaacatga aagtgaacga
     1141 gctcgcagtt tgcgcgctgg atcgaaacac tttggcgatc ggcactttgc cgaacgtgcg
     1201 cgcggcgatc gaggctggca agagcggtcg tgcgagtagc gacctggtag cactggcgac
     1261 tcaggatccg aacgccttga ttggttttgg cgggaacgtt actagcgagt tgctcaagaa
     1321 tcttaacgtc ggcaacgatg cgatcgccaa agacgcgaac tcaatccgac aggtttacgg
     1381 atcgattggg atgactgaga aggatttcag gctgttgctg gtggcgcgtg ctgcaaccgc
     1441 ggccgatgcc aggaatctca gcgatacggt gacgggctta cggcaactgg gcggaatcct
     1501 gatttcgcgc atggcgccgg cgaaaaagaa tctggcgcaa agcgcactcg atagtcttaa
     1561 gatcacaacg cgcgcgaacg aattagagat caggacgcag ttcgcggcgg cggatctctc
     1621 ggccttccta aagtgacggc agaaaatcag accgctccga aagaaggcgc ggccgcgccg
     1681 aacttcaccc tgcgagacgg cgcgggcggc gagtggcgtc tgtcggatca tcacggcaaa
     1741 gtcgtggtgc tgctcttcta tcccggagac gagacgccgg tctg
//
LOCUS       DASZZE010000471         6084 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_307757, whole genome shotgun sequence.
ACCESSION   DASZZE010000471 DASZZE010000000
VERSION     DASZZE010000471.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6084)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6084)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6084
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307757"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..345
                     /locus_tag="VHD88_09140"
     CDS             <1..345
                     /locus_tag="VHD88_09140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS21998.1"
                     /translation="SLEFVASMAELQQRAKAHDLALENIYGRVRRVLVRHAGLSNASP
                     RAEIAARVALRSGLDRQELESLMRNCEDTINGAPTNAKETLRLARGLREIESVLGLRT
                     RARDAKQAAEKN"
     gene            471..1424
                     /locus_tag="VHD88_09145"
     CDS             471..1424
                     /locus_tag="VHD88_09145"
                     /inference="COORDINATES: protein motif:HMM:NF040105.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HVS21999.1"
                     /translation="MPEYVSATVAHIQNELRKVIVGQDEPIEQILVALLAEGHALIEG
                     VPGTAKTLTVKTLARIVNAGFGRIQFTPDLMPSDITGTNVFNMATTAFSLRRGPVFTD
                     ILLADEINRTPPKTQAALLEAMEERQVTIDGETYPLSPMFTVLATENPIEYEGTYPLP
                     EAQLDRFLLKILLAYPSADDEHQVVARWDSGFNARRLDQVDIQPLSEAEAISRCRAEV
                     RNMRMEPGVQRYVVDIVRRTRDHPAAHYGASPRAAVALLLCSKALSAIRSRDFSTPDD
                     VRDMARPVLRHRLTLRAEAELDGATPDSVISDILQSAEVPR"
     gene            1747..2142
                     /locus_tag="VHD88_09150"
     CDS             1747..2142
                     /locus_tag="VHD88_09150"
                     /inference="COORDINATES: protein motif:HMM:NF013970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HVS22000.1"
                     /translation="MLLDSNIIIYSAKREHVELRSFMAENAYSVSAVSLIEVLGYHLL
                     DDKERQYVVEFFDAANILRISDPVITEAVKLRQTRRMSLGDAIVAGTALAHQLALVTR
                     NIGDFSWIQSLSLINPLELPELIEPESDS"
     gene            2202..3284
                     /locus_tag="VHD88_09155"
     CDS             2202..3284
                     /locus_tag="VHD88_09155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011000070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
                     /protein_id="HVS22001.1"
                     /translation="MWDSCEALAITEEQRETLQTWIAARNSPQKVVFRSRIVLAAASG
                     AANRRIARELKTSRPTVILWRSRFLEAGPAALIEDAPGRGRPAQIPAAKVKKIVEATL
                     HTTPKAATHWSVRTMAQVHGVSPATVQRIWDANGLQPHRTRTFKLSKDKQFVEKLNDV
                     VGLYLNPPNKALVLCVDEKSQIQALERSQPGLPIKKGRCGTMTHDYKRHGTTTLFAAL
                     NVLDGTVIGECMPRHRHQEYLKFLRKLDREIPSGLELHLVVDNYSPHKHDDVTGWLAK
                     HPRFHIHYTPTSSSWLNLVERWFRELTQKRLRRGNFTGVNELIAAIKEYLAQNNKQPK
                     PFVWTATAQQIIDKLNRCKGISETLH"
     gene            3294..4613
                     /locus_tag="VHD88_09160"
     CDS             3294..4613
                     /locus_tag="VHD88_09160"
                     /inference="COORDINATES: protein motif:HMM:NF024909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HVS22002.1"
                     /translation="MRFVFSRLFYALLAVGFVPLSLSWGRPMLRWVALTYDLAVIAFA
                     VIDAWNSKVATGVRIERHFSGRFAVGAETEVRIEIANNTARAASLFIKDEYPPQMKLS
                     GAREARVDVEAQTSAALVYGLTPPKRGRFEFGEIAVRYLSRWHLVWNQTLVAAQIAVK
                     VYPNMRRAREAELKALGARSFVAARRKSQWRGEGRDFESLRDYVRGDEMRHISWSATA
                     RRGKLVTRQYQMERDQTILIALDAGRLMTARIENETKLDSAVHAALALMSAAARAGDN
                     AGLLVFGRRIKAYLPPKRGAEHLDAALEALHAIEPEMIEPSYSRAFEFISANSRRRSL
                     VVILTDLVDEEGSRELLSSLKLLRPRHLPLVVTIADRDLKAVVREKPENDRELFTQSV
                     AEEITYQREAACRLVESQGGLALDVTAAALAPKLLETYLRVKERGLL"
     gene            complement(5044..6021)
                     /locus_tag="VHD88_09165"
     CDS             complement(5044..6021)
                     /locus_tag="VHD88_09165"
                     /inference="COORDINATES: protein motif:HMM:NF014052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stage II sporulation protein M"
                     /protein_id="HVS22003.1"
                     /translation="MPIDRFINERKSAWQRLEELLQLLDRMTLRRLHREEVRELGRIY
                     RRTASDLAIARAESRDPRLINYLNSLVIRAHGRIYRADAQGYGRIRDFFTRDFPQAFR
                     RTWRYTAVGFTVFLVFSLVSFAGTWRDSEFSEFAGISAAWRARNIEPPRHWWERINEA
                     NQEESADIFTNNIQVTFYTFAYGAILGVGTLYILALNGAMMGSILALTYKAHFGNDLV
                     TFMVGHGVIELSCIFIAGGAGLLIGTALLVPGDLSRGDAFKSRGMEAVRLVVGCVPLL
                     VVAGIIEGFISPQPINPAIKISIGAITGVALYSYLLLAGREGEGAKGKG"
BASE COUNT         1393 a         1641 c         1742 g         1308 t
ORIGIN      
        1 agtttggaat ttgtcgcgtc gatggccgag ctgcaacagc gcgccaaggc gcatgacctg
       61 gcccttgaga atatctacgg ccgagtgcgc cgcgtgctgg tgcgtcacgc gggtttgagc
      121 aacgcgagcc cgcgagcaga gattgccgcg cgcgttgcat tgcgttccgg tctcgaccgg
      181 caagagcttg aatcgctgat gcgaaactgt gaagatacaa tcaacggcgc gccgacgaat
      241 gccaaagaaa cgctgcgatt ggcaagaggt ctgcgcgaga tcgagtccgt actcggtttg
      301 cggacgcgcg cgcgtgacgc caaacaagcc gcggaaaaga actgagcatt tttgatttta
      361 gatttctgat ttgcgattgt gctctcgtct tcggcttccg gctcgcagtg ccggctggcg
      421 aggaccaagt gagagatctc aaatctaaga tctaaaattg gaaatcgaaa atgcctgaat
      481 acgtttccgc gacagtcgca cacatccaaa acgagctgcg caaagttatc gtcggccagg
      541 atgagccaat cgaacagatc ctcgttgcgt tattggcgga aggccacgca ttgattgagg
      601 gcgttcccgg cacggcgaaa acgctgacgg taaaaacgct ggcgcgcatt gtcaatgccg
      661 gctttggccg cattcagttc acgccggact tgatgccttc ggacatcacg ggcacgaacg
      721 tcttcaacat ggcgacgacg gcctttagcc tgcgccgagg cccggtgttc actgacattc
      781 ttcttgctga tgagatcaat cgcacgccgc caaagacgca agctgcgttg ctcgaagcga
      841 tggaagaacg tcaggtgacg atcgatggcg aaacctaccc gctctcgccg atgttcaccg
      901 tgctggcgac tgagaatccg attgaatacg aaggcacgta tccgctgccg gaagctcagc
      961 tcgatcgttt ccttttgaag atcttgcttg cgtatccttc agccgatgat gagcatcaag
     1021 tggtggcgcg ttgggattca ggctttaacg ctcggcgttt agatcaagtt gacatacagc
     1081 cgctgtccga ggccgaagcg atttcgcgct gtcgcgccga ggtgcgcaac atgcgcatgg
     1141 agcccggcgt gcaacgctac gtcgtggaca ttgtgcgccg cacccgtgat catccggccg
     1201 cgcattatgg cgccagcccg cgcgcggcgg tcgctttgtt gttgtgctcg aaagcgcttt
     1261 ctgcgatccg cagtcgcgac ttctcgaccc cggatgacgt gcgcgacatg gcccggcccg
     1321 tgctgcgtca tcgtctgacg ctgcgcgctg aagccgaact ggacggcgcc acgcccgatt
     1381 cggtgattag cgacatcctt cagagcgctg aggttccgag ataagtgggc cctcttgcgt
     1441 tcagcggaac caccatgcga gcattggatt agtttcggag gtaaagatcg tgcgcgacac
     1501 ttacagagcg atactcagag gagatcggtt ggaatggact gaggttgtgc ccgccgacct
     1561 cactcaggaa caaccagtgg aggtaactat tcttgaggag ccacctcaaa cggcaagtcg
     1621 acgcagacgt atggctgaag cgctcgagaa gcttgccgct atcgacgcat tttccgaaat
     1681 ctccgatccg tcagaatggc agcgagaggt tcgtaaagat cgtccgcttc ccggccgcga
     1741 cgtctgatgc tcctcgatag caacatcatc atctactccg ccaagcgaga gcacgttgaa
     1801 ctgcggagct tcatggctga aaatgcttac tctgtttcgg ccgtgagcct catcgaagtc
     1861 cttggctatc atcttctgga tgataaggaa cggcagtatg ttgtcgaatt ttttgatgcc
     1921 gcaaacattc taagaatctc tgacccggtt attaccgagg ccgtcaaact tcgacagacc
     1981 aggcgaatgt ctctgggtga tgctattgtg gccggaacag ccttggcgca tcagcttgcg
     2041 ttggtaacta gaaacattgg cgacttcagt tggattcaga gccttagcct cattaacccc
     2101 ctcgaattgc cagagttaat tgagccagaa tcagatagct agtgtagtgt ctcacaaata
     2161 gctttacaat gtagactcgt tgctgtatgc tgcgagtcac gatgtgggat agctgtgaag
     2221 cactggcgat taccgaagag cagcgagaaa ctttgcaaac ctggatcgcc gcccgtaaca
     2281 gtccgcagaa agttgttttc cgttcgcgaa ttgtgttggc ggcggcgagc ggagccgcta
     2341 atcggcgtat cgcgcgcgag ttgaagacga gccgaccaac ggtgattctt tggcgcagcc
     2401 gtttcctgga agcgggccca gcggcgctga ttgaagatgc tccgggacgc ggtcggcccg
     2461 cacagatccc ggcggccaag gtcaagaaaa tcgtggaggc taccttgcat acgaccccca
     2521 aagcggcgac ccattggagt gtgcggacca tggcgcaagt gcacggcgtc agtcccgcta
     2581 ccgtccaacg tatttgggat gcaaatgggt tgcaaccgca tcgaacccgc acctttaagc
     2641 tgtcgaaaga taaacagttt gtcgaaaagc tgaacgatgt cgtgggattg tacttgaatc
     2701 ctccgaataa agcgctggtg ctgtgtgtgg atgagaaaag ccaaattcag gccttggaaa
     2761 gatctcaacc ggggctcccg attaagaagg gccgttgtgg caccatgacg catgactata
     2821 agcggcacgg cacgactact ctctttgcag ccctcaacgt gctggacggc acggtaatcg
     2881 gtgagtgcat gccccgtcat cgacatcagg agtatctgaa gttcctgcgc aagcttgata
     2941 gagagatccc gagtggtttg gagttgcacc tggtagtaga taattacagt ccccataagc
     3001 atgacgacgt cacggggtgg ctggcaaaac atccgcggtt ccatatccat tacaccccca
     3061 ccagttcttc ttggcttaat ttggtggagc gttggtttcg cgaactaacc cagaagcgct
     3121 tgcggcgcgg caacttcact ggcgtaaacg aactcatcgc cgccatcaag gaatatctgg
     3181 cacagaacaa caaacaacca aaaccatttg tctggaccgc taccgcacaa cagatcatcg
     3241 ataaactcaa tcgttgtaaa ggaatttctg agacactaca ctagcatcgc taaatgcgct
     3301 tcgttttcag cagactcttc tacgcgctcc tcgcggttgg cttcgtgccg ctttcgcttt
     3361 cgtggggacg gccgatgctg cgctgggttg cgctcaccta tgatctcgcg gtgattgcct
     3421 ttgcggttat agatgcgtgg aatagcaaag tagcgacagg cgttcgcatt gagcggcact
     3481 ttagcgggcg cttcgccgtc ggcgccgaaa cagaagttcg tattgagatc gccaacaaca
     3541 ccgctcgcgc tgcatcgtta ttcatcaaag acgaatatcc gccgcagatg aaactctccg
     3601 gcgcgcgcga agctcgcgtt gatgtcgagg cgcaaaccag cgccgcactg gtttacggtc
     3661 tgacaccgcc aaagcggggc cggttcgagt tcggcgaaat cgcagtgcgc tatctttcgc
     3721 gttggcattt ggtgtggaat caaacgctgg tggctgcgca gatagccgtc aaggtttatc
     3781 caaacatgcg acgcgcgcgc gaagccgaac tgaaagcgtt gggcgcgcgt tcattcgtgg
     3841 cggcgcgacg caagtcgcag tggcgcggcg agggccgaga cttcgaatcg ttgcgcgact
     3901 atgtgcgcgg tgacgagatg cgtcacatct cgtggtcggc caccgctcgg cgcggcaagc
     3961 tcgtcacgcg gcaatatcag atggagcgcg accagacgat tttaatcgcg ctcgacgccg
     4021 ggcgtttgat gaccgcgcgg attgaaaatg aaacgaagct agactccgcg gtgcatgccg
     4081 cgctggcgct gatgtcggcc gcggctcgcg ccggcgacaa cgcggggctt ttggtttttg
     4141 gcagacggat aaaagcgtat ctgccgccga aacgcggcgc cgagcatctc gatgccgcgc
     4201 tcgaagcctt gcacgcgatc gagccggaaa tgatcgagcc gagctactcc cgcgcctttg
     4261 aattcatctc cgcaaacagt cggcgacggt cgctggtcgt aatcctcacc gatctggtcg
     4321 atgaagaagg ctcgcgcgag ctgctctctt cattaaagct gctgcgacca cgtcatctcc
     4381 cgctggtcgt cacgattgcc gatcgagatc tgaaagcagt cgtgcgcgag aaacccgaga
     4441 acgatcgcga actcttcacc caatcggtgg ctgaggaaat cacttatcag cgtgaagcgg
     4501 cctgccgttt ggttgaatcg cagggcggac tggcactcga cgtgacggcg gcagcgctgg
     4561 cgccaaagct tcttgagaca tatttgcgag tgaaagagcg cgggctgtta taaatgggga
     4621 aagggtaagg gggaaagggg aaaggtgaag ccacccttgg atggaaagcg aatcgagtct
     4681 tttgaggact tgagggtttg gcaaggtggt attgatctgg ttaagcagat ctacgtgttg
     4741 actggcgacg gagaactcaa aagagatttc ggtttgcgag atcagttgag gcgggcggca
     4801 gtctccatcc caacaaacat cgtagagggt ttcgaacgat cgtcgcggaa agagtatttg
     4861 ttgtttctga atattgctaa aggttcagcc ggtgaacttc gaagtctgct gcgagttgca
     4921 cttgacgttg gctatctgga gaaatcgaaa catgatcaac ttcgagaatc agtcttgata
     4981 ttgagccgct cgctttcgaa ccaaataaaa tccataagag cccgcattcc gtaacagttc
     5041 cctttacccc ttcccctttg ccccttcccc ttctcttccc gctaagagta gatacgaata
     5101 caacgccacg ccggtgatcg cgccgatgct gatcttgatc gcaggattaa tcggttgagg
     5161 tgagataaag ccttcgatga ttcccgcgac gaccagcagc ggcacacagc ctacaaccaa
     5221 ccgtacagct tccatgcctc gcgacttgaa cgcatcgccg cgcgaaagat cgccgggcac
     5281 caacagcgcg gtgccaatca acaacccggc gccgcccgcg atgaaaatgc acgacagttc
     5341 gatcacgccg tggcccacca tgaaggtgac caggtcattg ccaaaatgcg ctttgtacgt
     5401 aagcgcaaga atcgatccca tcatcgctcc attaagagcg agtatataga gagtaccaac
     5461 cccgagaatt gccccatagg caaaggtgta aaaagtaacc tgaatgttgt ttgtgaaaat
     5521 gtccgcagat tcttcttgat tcgcttcgtt tattctctcc caccagtgcc tgggcggttc
     5581 aatgtttctg gctctccacg ccgcgctaat gccggcgaat tccgaaaact cagaatctcg
     5641 ccaagttcct gcaaatgaaa ccaaactgaa aaccagaaag acggtgaagc cgaccgccgt
     5701 gtaacgccac gtgcggcgaa aggcctgcgg aaagtcgcgc gtgaaaaagt cgcggatgcg
     5761 gccgtagcct tgcgcgtcgg ccctgtaaat acggccgtga gcacgaatta ccaggctatt
     5821 cagatagtta atgaggcgcg gatcgcgcga ttcggcgcgg gcgattgcca gatcggaggc
     5881 cgtgcggcga taaatcctac ccaactcgcg aacttcttcc cggtgcagac gccgcagcgt
     5941 catccggtcg agaagttgca gcaactcctc gagcctttgc caggcgctct tgcgttcatt
     6001 gatgaagcgg tcgatgggca taaaacagat gttagaggtt agaggttaga tgctagatgt
     6061 tagaatcgga ctgacatctg atat
//
LOCUS       DASZZE010000472         1597 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_259638, whole genome shotgun sequence.
ACCESSION   DASZZE010000472 DASZZE010000000
VERSION     DASZZE010000472.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1597)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1597)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1597
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_259638"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1597
                     /locus_tag="VHD88_09170"
     CDS             <1..>1597
                     /locus_tag="VHD88_09170"
                     /inference="COORDINATES: protein motif:HMM:NF020390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1800 domain-containing protein"
                     /protein_id="HVS22004.1"
                     /translation="MSTAELYEKYPQPGQLLRQLQKRGDLPTELAAARDNRVKGGANV
                     APASANAPKSGGATAGEMQGPEMAKEGQASTNAAQPNNANAANPMNNPEYRKAVMEYY
                     KENNLRPAQFITGELQMSRILRAVYSERQLQEVMVDFWTNHFNVFAGKGADRWFLTSY
                     DRDTIRPNTFGKFYDLLLADAESPAMLFYLDNFQSVSPNAQFPQQRPGAARGPLAELM
                     RAPNPNRNPNPTMTNNPQQQRPQQQRQQQRRGINENYARELMELHTLGVDGGYTQKDV
                     QEVARCFTGWTILQPRGGGAAVNAIMGRDMRDSAGKFVFRAAVHDNGEKIVLGHKIPG
                     GGGMGDGLAVLNILVHHPSTAHFIATKLVRHFVSDDPPPALVDRVAQTFLKTDGDIRE
                     VLKAIFFSPEFNSADAYRAKVKRPFELAISSVRTLGAETNGGPQMHQWIARMGQPLYG
                     FQTPNGYSDVAENWVNTGALLERMNFALALVSNRIPGTRVDLSRFVGDMGNGGSVDKA
                     KLLDRFVTLIVGGDISPKTRETLL"
BASE COUNT          354 a          460 c          484 g          299 t
ORIGIN      
        1 catgagcacg gccgagcttt acgagaagta tccgcagccg ggacaactcc tgcgtcaact
       61 ccaaaagcgt ggcgatttgc ctaccgaact tgctgcggcg cgcgacaatc gtgtgaaggg
      121 cggcgcgaac gtcgcgcctg cttcggcaaa cgcgccgaag agcggtggag cgaccgcggg
      181 cgagatgcaa ggtccggaaa tggcaaagga gggtcaggcc agtacaaacg ctgcgcagcc
      241 gaacaatgcc aatgccgcga acccgatgaa caatccggag tatcgcaaag cggtgatgga
      301 gtattacaag gaaaacaatc tgcggccggc acagttcatc accggcgaac tgcagatgtc
      361 gcgcatcctg cgcgcagttt acagcgaacg gcaattgcag gaagtgatgg ttgatttctg
      421 gaccaaccac ttcaacgtct ttgccggcaa aggcgctgac cgatggtttc tgacttcgta
      481 cgatcgcgac accatccgcc cgaacacgtt cggcaagttc tacgatcttc tgctggctga
      541 tgccgagagt ccggcgatgc ttttctatct cgacaatttt caaagcgtca gtccgaacgc
      601 gcaattcccg cagcagcgcc cgggcgcggc ccgcggtccg ttagcggagt tgatgcgcgc
      661 acctaatccc aatcgaaatc cgaatccgac gatgacgaac aaccctcaac agcagcgacc
      721 gcaacagcaa aggcaacaac agcgacgcgg catcaacgaa aactacgcgc gcgaattgat
      781 ggaactgcac acgctcggcg tcgatggcgg ctatacacag aaggacgtgc aggaagtcgc
      841 gcgctgcttt acgggctgga cgattctcca gccgcgtggc ggcggtgctg cggtgaacgc
      901 catcatgggc cgcgatatgc gcgacagcgc cggaaaattt gtcttcagag cagccgttca
      961 cgacaacggc gaaaagatcg tgctcggcca caagattccc gggggcggtg gaatgggtga
     1021 cggtctggcg gtgctgaaca ttctcgtgca tcacccgtca acggcgcact tcatcgcgac
     1081 gaagctcgtt cgccacttcg tctcagacga tcccccgccg gcgctcgtcg accgcgtggc
     1141 gcaaactttc ctgaagactg acggcgacat tcgcgaagtg ttgaaggcga tcttcttttc
     1201 gcctgagttc aattccgccg acgcttatcg agcgaaagtg aagcggcctt ttgagctggc
     1261 aatcagctcg gtgcgcacgc tgggcgccga gacaaacggt ggaccgcaga tgcatcagtg
     1321 gattgcgcgc atgggccagc cgctgtacgg cttccaaact ccgaatggtt attccgatgt
     1381 ggccgagaac tgggtaaata ccggtgcgct gctcgagcgc atgaactttg cgctagcgct
     1441 tgtcagcaat cgcattcccg gaacgcgcgt cgatctgtcg cgctttgtgg gggacatggg
     1501 caacggtgga tctgtcgata aggcgaagtt gcttgatcgc ttcgtgacgt tgatcgtggg
     1561 cggcgatatt tccccgaaga cgcgcgagac tctgttg
//
LOCUS       DASZZE010000473        11261 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_157951, whole genome shotgun sequence.
ACCESSION   DASZZE010000473 DASZZE010000000
VERSION     DASZZE010000473.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 11261)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11261)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11261
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_157951"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1262
                     /locus_tag="VHD88_09175"
     CDS             <1..1262
                     /locus_tag="VHD88_09175"
                     /inference="COORDINATES: protein motif:HMM:NF014950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HVS22005.1"
                     /translation="QETAKNLVTRSIEIFDEVGQPELVAEARGDLALCYWREGAFDEA
                     RINLADALSYLPEEDILLKAMLLIRAGIVELWTQRLSEALRFYNEAEPLVERSGDNAL
                     KGAFHNEFALLFRRLGAAESRTDYLDRALIEYAAASFYFEKTGHTRYRARVENNLGFL
                     YLTIGKFADAHEHINNARQMFVSLGDRGGVAQVDDTRARALLAEGRLTEAERFARSAV
                     KTLERGGEQSLLTGALTTEGTVLARMGKHAKSRASLRHAIEVAETAGDLEGASRARLS
                     IIEELAPQTSAEELVALYQSAADLLTRSQDPLAAQRLVACSSKVIEALGVSDAADPQP
                     QELNWDGYSLKEHMRRIEKAIIERALRDSGGAVTRATRLLGMNHHQSLIAVINGRHKD
                     LLGVRTAVRVRRRSIISKGKGRSKKNH"
     gene            complement(1281..2261)
                     /locus_tag="VHD88_09180"
     CDS             complement(1281..2261)
                     /locus_tag="VHD88_09180"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HVS22006.1"
                     /translation="MRVLITGGAGFIGSHLSDAYLQRGDEVFVIDDLSTGSIRNIEHL
                     KDHPHFHYKIDSVHNRPVTAELVDQCDVIFHLAAAVGVKLIVESPVRTIETNVHGTEV
                     VLSLASKKRKRVLIASTSEVYGLSTEVPFREDGNLVMGATTKGRWSYACSKAIDEFLA
                     LAYWREKKLPTIVVRLFNTVGPRQTGQYGMVIPTFVKQALSGRPITVFGSGKQSRCFC
                     YVGDVVGALTKLMDNEKAVGEVFNVGSNQEITIFDLAGKVKELTDSKSEIVFVPYDEA
                     YEEGFEDMPRRIPDTSKVNALVGFRPEKSLDDILNSVIEFHSEKVSAGRA"
     gene            complement(2288..3604)
                     /locus_tag="VHD88_09185"
     CDS             complement(2288..3604)
                     /locus_tag="VHD88_09185"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HVS22007.1"
                     /translation="MKILRIIARLNVGGPARHVVWLTEGLKSAGYDTVLVAGVVPPGE
                     DDMSYVAAAAGVAPLTLPDMSREISLRDALATWNLFRLMLRERPDIVHTHTAKAGTVG
                     RVAGCMYRWLTPATLIGRPRRCRFVHTYHGHVFHSYYGPAKTRLFLVIEKLLARIVTD
                     RIVVVSEQQRREINEVFRVGRRKQFVVIPLGIDMSAYANWQERRPRLRAELKAKESDL
                     LVGIVGRLTEIKNHQMFLQAAARLEVILRAKGGTPRVRFVIVGDGSLRGDLESQAASL
                     GLSADVVFLGTREDPESFYPALDILALSSLNEGTPLTLIEAMANARPVIATAVGGVVD
                     LVGPASESQAGFTICSRGISVGSGDVEGFAHGLARLIEDRTLREELGERGRYFVAANY
                     AKERLLSDMSNLYAQLVVNGSAASECAVGADETATGDCRARLTPRT"
     gene            complement(3677..4183)
                     /locus_tag="VHD88_09190"
     CDS             complement(3677..4183)
                     /locus_tag="VHD88_09190"
                     /inference="COORDINATES: protein motif:HMM:NF013103.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008830 - dTDP-4-dehydrorhamnose
                     3,5-epimerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase family
                     protein"
                     /protein_id="HVS22008.1"
                     /translation="MQQKPAPTPDTFQPGEIKDVVVRELRKFDDRRGWLCELFRHDEL
                     AAEFSPAMAYISSTNPGVARGPHEHVDQADLFCFIGPSNFKLRLWDNRSDSPTFRNVM
                     TLIVSANDPKAVIVPKGVVHAYQNVGDVDGIVINCPNRLYMGEGRGEEIDEIRHEDDP
                     HTRFRMDD"
     gene            complement(4155..4919)
                     /locus_tag="VHD88_09195"
     CDS             complement(4155..4919)
                     /locus_tag="VHD88_09195"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HVS22009.1"
                     /translation="MKGVVLAGGLGSRLRPLTAVTNKHLLPVYSQPMIYYPIQTLVNA
                     GITDIMIVTGGNSAGDFLKLLGNGKAFGLKHLNYTYQEGEGGIAAALALVEHFAGDDP
                     ICVVLGDNIIQGNIRAAADAYREQGRGAKILLKKVPDPQRFGVPELDGQSVLRIDEKP
                     SQPKSEYAVIGIYMYDARVFEIIRTLRPSGRGELEITDVNNAYIERGEMTWNELEGWW
                     SDAGTFESLLHASNLVAETGANQRELKHAAEAGANA"
     gene            complement(4938..5678)
                     /locus_tag="VHD88_09200"
     CDS             complement(4938..5678)
                     /locus_tag="VHD88_09200"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HVS22010.1"
                     /translation="MPIPVNGLEQHYGVEPEDYFEHHQLNDKGISASSLLTLAEELTS
                     GKGRLLDIGAGRGELLGAARDVGWDVTGIEPSGRFAEFAAGYSGVRLRSEPVEQCAFP
                     ERSFDCVILSAVLEHLYNPDETIKEISRILRPGGAVFIDVPNEGGLYFKVGNLYQKLR
                     GRDWVVNIAPTFSPFHVFGFSPRSLRALLAKHGLRPRLWRVYQGRAMVPSRAGIVGEL
                     ERLAARAVTAASSIGSFGTYIETWAVKL"
     gene            complement(5968..7848)
                     /gene="asnB"
                     /locus_tag="VHD88_09205"
     CDS             complement(5968..7848)
                     /gene="asnB"
                     /locus_tag="VHD88_09205"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HVS22011.1"
                     /translation="MCGIAGIVRSDGAQVDRDLLARMNEAIRHRGPDDDGFYFSDGVG
                     LAMRRLSIIDLKTGQQPIHNHDRTAWIVFNGEIYNYRELREQLEKLGHTFYTDSDTEA
                     IVHAYDQYGTDCPKHLRGMFAFAIWDERTKSLFLARDRAGKKPLLYAQVNGQLVFGSE
                     FSALLLHPNVSRDVDFEAIHYYLSFICVPAPLTAYRAIRKLEPGNSLLWHNGEIKIER
                     YWQLDFSKKVKLNEAEAGERAVELLRDAVKVRLMSEVPLGAFLSGGIDSSAVVALMAQ
                     ESSEQVKTFSIGFDEQDFSELHHARRVAEHVGADHHEFIVRPDAMEVLPTLVEHYGEP
                     FADSSAIPSYYVSRETRRYVTVALNGDGGDECFAGYQRYAAMNIAQKYAALPAVLRNG
                     VIANVVKVLPGFDARQNPLRKAKRFVAAASMPPAERYLRWMSAFNEDHKRDLYTSDFL
                     HETSKFDIAGVFRPWFAKANGAGIVDASLLTDTMTYLPNDLLVKMDIASMAVSLEARS
                     PFLDHHVMEFAASLPEKLKLRRLTTKYLLKRVLKKLVPEENLTRSKMGFGVPIGHWFR
                     GAMQPFLRETLLSEKALSRGLFKPEMVRRIIDQHVESHNDHSHRLWSLLMLELWFERF
                     ID"
     gene            complement(7867..9306)
                     /locus_tag="VHD88_09210"
     CDS             complement(7867..9306)
                     /locus_tag="VHD88_09210"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HVS22012.1"
                     /translation="MKAIITFLALALAISILVLVPTLAAPYAPLYGSVTIYDCARAVL
                     SCFVLATIAGLLIRRAENHGSYLLNLFALALLLRVAIGTAIFVFKGQDFFGGDAWTYD
                     YFGAQQLAAWGGNRSAQFVVDSFLGRGLGSGWGMVYLVAGIYRIIGRNMLAIQFFNAV
                     LGAATAPIIFMCALHVFNNSRVAKLAAIAVAFYPSLVLWSAQGLKDGPIVFSLALCIL
                     ATLKLGQKLSGTYLTILVASLWCVLALRFYVFYMLLAAIVGAFLIGMRAVSAQSIARQ
                     FVVVMALGLSLTYFGITRYASAQFETYATFEQLKLTRMDASQSAQSGFGQDVDVSTTS
                     GALTAIPMGMLYLLFAPFPWQLGSLRQSLTLPEMIVWWASFPMLVLGLWFSIKYRLRQ
                     MSPILIFTSMLSLAYSVFQGNVGTAYRQRAQLLVFYFLFVAVGAVMLKEKREEKARRA
                     QEERRIAAQPGPRWKQGKAPGKDQMPVEG"
     gene            complement(9323..10048)
                     /locus_tag="VHD88_09215"
     CDS             complement(9323..10048)
                     /locus_tag="VHD88_09215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS22013.1"
                     /translation="MHRVSKFRLLVLALIAVLPSFLMRPCYRLFFGYRVGKRVRLGFS
                     IIDAQECYIDDDVRIGHFNVVVGVKKLTVGDHVRIGHLNIIRGGDEVTLERYSELIRM
                     NEINSIPDPDVVNAVEPRFSLGAGSIITTGHKIDFTDRVEIGRRTIIGGRNSSLWTHN
                     RQRTLPISIGDFAYLGSEIRMAPGGSLPSRCVVGIGAVITGKIETDGWLIAGVPAKPI
                     KELSSEDRFLIERKTRPDLPDDI"
     gene            complement(10095..11216)
                     /locus_tag="VHD88_09220"
     CDS             complement(10095..11216)
                     /locus_tag="VHD88_09220"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HVS22014.1"
                     /translation="MEKLNILVTGGAGFIGSHLTDALVERGHRVRVLDLLVPQVHGAG
                     PAQYLNPAAEFIHGDVGDAQVIQRALHGIDAVFHEAAEVGVGQSMYEIQRYVRANDLG
                     TAVLLENLIEHKPRVRKLVVASSMSIYGEGPYTCGSCGEVYPQLRPAAQLLARRWEME
                     CPSCGAQLTPSGTSENKPLFPTSIYAITKQDQEQFCLVVGRAYGIPTVALRYFNVYGP
                     RQALSNPYTGVCAIFSARLLNDQRPLIFEDGEQTRDFVHVSDIVQANLRALEANGADY
                     QAVNVGTGVATSVRQIARLLAQGLGKSLEPEIVAKYREGDIRHCVADISRARALLGYE
                     PRVRLEQGIPELLQWVSRQEPEDQVSKATAELETRQLVR"
BASE COUNT         2505 a         3286 c         3088 g         2382 t
ORIGIN      
        1 ctcaggagac ggctaagaat ctggtcacga ggagcatcga gatcttcgac gaagtggggc
       61 aacctgagct ggttgccgag gcgcgtggcg acctcgcgct ctgctattgg cgcgaaggcg
      121 cgtttgatga ggcgcggatt aacctcgctg acgcattgag ctatctgcca gaggaggata
      181 ttttattaaa ggcgatgctc ctcattcgcg ccggaatcgt tgagctgtgg acgcagcggc
      241 tgagtgaggc attgcggttc tataatgagg ccgagcctct ggtagaacgc agtggagata
      301 acgctctcaa aggagctttc cataatgagt tcgctctctt gttccgaaga cttggtgcag
      361 cggaaagtcg cactgactat ctagaccggg cgctgattga atatgcggca gccagctttt
      421 attttgagaa gaccggtcac acgcgttatc gcgcgcgagt tgaaaacaac ctggggtttc
      481 tctacctgac gatcggcaaa tttgccgatg cacacgagca cataaacaac gcgcgccaga
      541 tgttcgttag ccttggcgat cgaggcggcg tcgcccaagt tgacgatacc cgtgcgcgcg
      601 cgttactcgc ggaaggtcgt ctcacggagg cggaacggtt cgcgcggtcg gcggtcaaaa
      661 cactcgagcg tggcggtgaa caatcactgc tgaccggtgc gttgacgacc gagggaaccg
      721 tgctggcgcg gatgggcaaa cacgcaaagt cgcgagcgtc cttgcgacac gcgatcgagg
      781 ttgctgagac ggcgggcgat ttggaaggcg cgagccgcgc caggttgagc atcattgaag
      841 aactcgctcc gcagacctca gccgaagagt tggtcgcgct ctaccaatcc gccgccgacc
      901 tcctaacgcg gtctcaagat ccattagctg cccaacggtt ggtcgcttgt tcgtctaaag
      961 tgatcgaagc cttgggagtg tcagacgccg cagatccgca accgcaggaa ctcaactggg
     1021 acggttattc gttgaaggag catatgcgcc gtatcgagaa ggcgatcatc gaacgggctc
     1081 tgagagactc gggcggcgcg gttacgcggg cgacacgctt gttgggcatg aaccatcatc
     1141 agagcctaat cgcagtcata aacggacggc acaaggatct gcttggagtg agaacggcag
     1201 ttcgagtgcg aagacgcagc atcatctcga agggcaaagg ccgctcaaag aaaaaccact
     1261 gaactattag cttgagtatg ctaagcgcgg ccggcggaaa ctttctcgct gtggaattcg
     1321 atcacgctgt tgagaatgtc gtcgagtgat ttttctgggc ggaagccaac caacgcgtta
     1381 accttcgagg tgtcggggat gcgccgcggc atatcctcaa aaccttcctc gtaagcctcg
     1441 tcgtagggca caaagacgat ctctgattta gaatccgtca gctctttaac tttgccggcg
     1501 aggtcaaaaa tcgtgatttc ctgattcgag ccgacgttaa aaacttctcc aaccgctttc
     1561 tcgttatcca tcaacttcgt cagcgcgccg accacgtcac cgacgtaaca aaagcaacgc
     1621 gactgtttgc cgctgccgaa caccgtaatc ggccggccag agagcgcttg cttcacgaac
     1681 gtgggaatca ccatgccgta ctggcccgtc tgtcgtgggc cgacggtgtt gaagagccgc
     1741 acgacgatcg tcggcagttt tttttcacgc cagtaagcga gcgccagaaa ttcatcgatg
     1801 gccttcgagc aggcgtaact ccagcggcct ttggtggtcg cgcccatcac caggttgccg
     1861 tcttcgcgaa acggaacctc ggtgctcaga ccgtaaactt ccgacgttga cgcgatgaga
     1921 actctctttc gctttttgct ggctagagag agcacgactt ccgttccatg aacatttgtc
     1981 tcgatcgtgc gcacggggct ttccacgatc agcttgacgc caactgccgc cgcgaggtga
     2041 aagatgacgt cgcactgatc gacaagttca gccgtaactg gccgattgtg aacgctgtcg
     2101 atcttataat gaaagtgtgg gtgatccttt aggtgctcaa tgtttcgaat gctgccggtc
     2161 gagagatcgt cgatgacaaa aacctcgtcg ccgcgctgca aatacgcgtc ggaaagatga
     2221 gagccgatga aacccgctcc gcccgtaatc agaactcgca aatgattcgc tcctgcaaat
     2281 gactgcgtta agtgcgaggc gtaagtctag cacgacaatc gccagtggcg gtttcgtcgg
     2341 cgccaactgc gcattcgctc gcggccgatc cattgaccac aagttgagcg taaaggttgg
     2401 acatgtcgct tagcagccgc tctttcgcat agttcgcggc gacgaaatag cgaccccgct
     2461 cacccagctc ttctcgcaaa gtcctgtctt cgatcaaacg cgccaacccg tgcgcgaagc
     2521 cctcaacgtc gccgctgcca accgaaatgc cgcggctgca aattgtgaag ccggcttgcg
     2581 attcgctcgc gggcccgacc agatcgacca cgccaccaac tgcggttgcg atcactggcc
     2641 gcgcattggc catcgcttcg attaatgtta gtggagtgcc ttcgttcaaa ctgctcagcg
     2701 ccaagatgtc gagcgccgga tagaaactct caggatcttc gcgcgtgccg agaaagacca
     2761 cgtcggcgct caatccgagc gacgcggcct gcgattcgag atcgccacgc agactgccgt
     2821 cgccgacgat cacaaaccgc acgcgaggcg ttccgccttt cgcgcgaaga atgacttcga
     2881 gtcttgcggc tgcttgcagg aacatctgat gattcttgat ctcggtcaga cgccccacga
     2941 tcccgacgag cagatcactc tcttttgctt tcagctcagc tcgcaagcgc ggccgcctct
     3001 cctgccagtt cgcatacgcg ctcatgtcaa tgccgagcgg aatcacgacg aactgtttgc
     3061 gtcgcccgac acgaaacacc tcgttgatct cccggcgctg ttgttcgcta accacgacga
     3121 tgcggtcggt tacgattcgg gccaggagtt tctcgatgac gagaaacagc cgtgtcttcg
     3181 ccggcccgta gtaactgtgg aacacgtgac cgtgatacgt atggacaaag cgacatcgac
     3241 gcggtcgtcc aatcagagtt gccggtgtca gccagcgata catgcatccc gcgacgcgtc
     3301 cgacagtgcc cgccttcgca gtgtgcgtgt gcacgatgtc aggtcgctcg cgcagcatca
     3361 ggcgaaaaag gttccacgta gcgagcgcgt ctcgcagtga gatttcgcgg ctcatatccg
     3421 gcagcgtcag cggcgcgacg ccggcggcag cggcgacgta actcatgtca tcttcgccgg
     3481 gtggcaccac accggcaacg agcacggtat cgtagccggc gctcttcagc ccttcggtca
     3541 gccagaccac gtgacgcgcc ggaccaccga cgttgagacg agcgatgatg cgaagaattt
     3601 tcatgagtct caagtctcac gcctcaagtc tcaagttaag gattgagtct cgagacgtga
     3661 gacctgagac ttcttttcag tcgtccattc tgaaacgcgt gtgaggatcg tcttcgtgcc
     3721 gaatctcgtc gatctcttcc cctcgtccct cgcccatgta gaggcggttc gggcaattga
     3781 tcacgattcc gtcaacgtcg ccgacattct gataagcatg aacgacgccc ttcggaacta
     3841 tcacggcttt cggatcgttg gcgctaacga tcagcgtcat gacgtttctg aatgtaggcg
     3901 aatcgctgcg attgtcccac aggcgaagtt tgaaattcga aggaccgatg aagcagaaga
     3961 gatcagcttg atcgacgtgc tcgtgcggcc cccgcgcgac gccgggatta gtcgaagaga
     4021 tataagccat cgcaggagag aattcagcgg cgagttcgtc gtgacggaac agttcgcaca
     4081 gccagccgcg ccggtcatcg aacttgcgca gctcgcgcac gacgacgtct ttgatttcgc
     4141 cgggctgaaa agtgtcaggc gttggcgccg gcttctgctg catgtttcag ctcccgttgg
     4201 ttcgcgccgg tttcagcgac caggtttgac gcgtgaagta aactctcgaa agtaccggcg
     4261 tcactccacc agccctcgag ttcattccag gtcatctctc cgcgttcgat gtaagcattg
     4321 ttcacgtcgg tgatctccag ttcaccgcgg cccgacggtc ttagcgtacg aatgatctcg
     4381 aacacgcgcg cgtcgtacat gtagattcca attacagcgt attcagattt tggctgcgac
     4441 ggcttctcat cgattcgcaa aacgctttgg ccgtcgagtt ccgggacgcc gaagcgttgc
     4501 gggtcgggca ctttcttaag aagaattttc gctccgcggc cttgttcgcg atacgcgtca
     4561 gcggccgcgc gaatatttcc ctgaatgatg ttatcgccga gcacgacgca aattggatcg
     4621 tctccagcga agtgttcgac cagcgctagc gccgccgcga tgccgccttc gccctcctga
     4681 tacgtgtagt tcagatgctt tagtccgaac gcctttccgt ttcccagcag cttcagaaaa
     4741 tcaccggccg agtttcctcc ggtaacgatc atgatgtcgg tgatgcctgc gttgaccagc
     4801 gtctgaatcg gatagtagat catcggctgg ctgtaaacgg gcagcaggtg cttgtttgtc
     4861 accgctgtca acggtcgcaa gcgactgccc agaccaccag ccaaaactac acctttcacg
     4921 aaaattctcc ttttaactca gagcttgacg gcccaagtct caatgtaggt cccaaagctt
     4981 cctatgctac tcgcggctgt gactgcgcgt gcggcgagcc tttcgagttc acccacaatt
     5041 cctgcgcgtg aaggtaccat tgcgcgtcct tgatagactc tccaaagacg cggcctgagg
     5101 ccgtgtttgg ccagcaatgc tcgaagcgat cgcgggctaa atccgaagac atggaacggc
     5161 gaaaacgttg gcgcgatgtt aacgacccaa tcgcggcccc gcagtttctg ataaagattt
     5221 cccactttga aatatagtcc gccctcgtta ggcacgtcga tgaaaaccgc gccgcccggg
     5281 cgcagaatgc gagagatttc tttgatcgtc tcgtccgggt tgtaaagatg ttcgaggacc
     5341 gcactcaaaa tcacgcaatc aaacgaacgc tccgggaaag cgcattgctc cactggttcg
     5401 gacctgagtc ttacgcccga gtaacctgcc gcgaattcgg cgaatcgccc ggagggttca
     5461 ataccggtga cgtcccatcc aacatcgcgt gccgccccca acaactcgcc gcggcctgcg
     5521 ccgatgtcca gcaacctccc ttttccgctg gtcagttctt cggcaagtgt caggagactg
     5581 gaagccgaaa tgcctttgtc gttaagctga tgatgttcaa agtagtcttc gggctcgaca
     5641 ccgtaatgct gctcgagacc gttgacgggt atgggcatcg gattcgggaa gatcaagcca
     5701 cagtttccgc aacgccaaat ttcacattca actccgaggt gcgcgcgatg tgccgagccg
     5761 cctcggcggc caagtcgtct cgtcggcgaa gtttcgcaga cggggcagtc ctgcggcacc
     5821 cagcgatact ctccgcttgc attagttcct atagcttgtg tcggatctga gtccattttt
     5881 tcgagccgta attcggcgag cgctgacgat ccttgctgag gaattaccca ttccaatcgt
     5941 gctcaaatct taatcagccg gtcattatca atcaataaac ctctcaaacc acagctcgag
     6001 catcaacagc gaccagagcc ggtgcgaatg atcgttgtgg ctttcgacat gctgatcaat
     6061 tatgcgacga accatttcgg gtttgaagag tccacgcgac agcgcttttt cggaaagcaa
     6121 agtctcgcgc aaaaaaggct gcatcgcgcc gcgaaaccaa tgtccgatcg gcacgccgaa
     6181 tcccatcttg ctgcgcgtca agttttcttc gggcaccaac tttttcagca cccgcttcag
     6241 caaatacttt gtagtcaggc ggcgcagctt cagtttctct ggcaagctgg ccgcgaattc
     6301 catcacgtga tgatcgagaa acggcgagcg cgcttcgagc gacaccgcca tgctcgcgat
     6361 gtccatcttg acgagcagat cgttcggcag ataagtcatc gtgtcggtca gcagggaagc
     6421 gtcaacaatg cccgcgccat tcgctttagc gaaccatggt ctaaaaactc ccgcgatatc
     6481 gaacttcgag gtctcatgaa ggaaatcgct ggtgtacaga tcacgcttgt ggtcttcgtt
     6541 aaaggcgctc atccagcgca gatagcgttc agccggcggc attgatgcag cggcgacgaa
     6601 tcgctttgct ttccgcagcg gattctgacg tgcatcgaat ccgggaagca ccttcacgac
     6661 atttgcgatc accccgttgc gcaacacggc gggcaacgcg gcgtacttct gagcgatgtt
     6721 catcgccgca taccgctgat atccggcgaa gcactcgtcg ccgccgtcgc cattcagcgc
     6781 gacagtcacg taacgacggg tttcgcgcga aacgtagtaa ctgggaattg ccgatgaatc
     6841 ggcaaacggt tcgccgtaat gttcgaccag tgtcggcaga acctccatcg cgtcgggccg
     6901 cacaatgaac tcgtgatgat ctgcgccgac gtgttcagcc acgcgccgcg cgtgatgcag
     6961 ttcgctgaaa tcctgttcgt caaaaccgat cgaaaatgtt ttgacctgct cagacgactc
     7021 ctgggccatc aaagcaacga cggcgctgga atcaatgccg ccggaaagga acgcgcccag
     7081 cggcacttcc gacatcagac gaaccttcac cgcgtcgcgc agcaactcga ccgcgcgctc
     7141 gccggcttct gcttcgttga gtttgacctt tttcgaaaag tcgagttgcc agtaacgctc
     7201 gattttaatt tcgccgttgt gccataacag agaattgccg ggttcgagtt tccggatcgc
     7261 gcgatacgcc gtcaaaggcg ccggaacgca tatgaacgag aggtaataat ggattgcttc
     7321 gaaatcgacg tcgcggctga cgttagggtg aagcagcaag gcgctgaatt cagaaccgaa
     7381 aactaactgg ccgttgactt gcgcatacag gagcggtttt tttcctgcgc gatcacgcgc
     7441 caggaaaagc gatttcgtgc gttcgtccca aatcgcgaaa gcaaacatgc cgcgcagatg
     7501 tttcgggcaa tcggttccgt attgatcgta ggcgtggacg atggcttcgg tgtcgctatc
     7561 ggtgtagaaa gtgtggccga gcttttccag ttgctcgcgc aattcgcgat agttgtaaat
     7621 ctctccgttg aagacgatcc atgccgtgcg gtcgtgattg tgtattggct gctggccggt
     7681 tttgagatcg atgatcgaaa gccggcgcat cgcgaggccc acgccatcgc tgaaataaaa
     7741 gccatcgtcg tccggcccgc ggtgacgaat tgcttcgttc atgcgcgcga gcaaatcgcg
     7801 atcaacctgc gcgccgtcgc tgcgaacaat gcctgctatg ccacacactt tttatctatc
     7861 ctgcgatcat ccctcgaccg gcatctgatc tttgcccgga gccttacctt gcttccatcg
     7921 cggcccgggt tgcgctgcga tgcggcgctc ctcctgcgcg cgacgtgctt tttcttctcg
     7981 cttctccttt aacatgacgg cgcctacggc gacgaacagg aaatagaaga ccaacaactg
     8041 cgcccgctgg cgatacgccg taccgacatt tccttggaac actgaatacg ccaacgacag
     8101 catcgacgtg aaaattagaa tcggagacat ctggcgcaga cggtatttga tcgaaaacca
     8161 aagtccgagc accaacatcg ggaaagaagc ccaccaaaca atcatctcag gcagggtgag
     8221 actctgacgc agcgagccga gctgccacgg gaacggcgca aaaagaagat agagcatccc
     8281 catgggaatt gccgtcaagg cgccggacgt agttgataca tcaacatcct ggccgaaacc
     8341 ggactgggcg gattgcgaag cgtccattcg ggtgagctta agctgttcaa aggtcgcata
     8401 cgtttcgaac tgagcgcttg cgtatcgggt aattccaaaa taagtcagcg acagtcccaa
     8461 ggccattacc accacaaact gacgggcaat gctttgggcg gatacggctc gcattccgat
     8521 cagaaacgct cccacgatcg ctgcgagaag catgtagaac acatagaagc gcaacgccag
     8581 gacacaccaa agcgaagcca ccagaatcgt caggtaagtg ccgctgagtt tctggcccaa
     8641 tttcaaagta gccagaatgc aaagcgccag agagaaaacg atgggcccgt ctttcaatcc
     8701 ctgagcggac cacaaaacga gcgacgggta aaatgcgacg gcgatcgcgg ccagctttgc
     8761 gactctactg ttgttgaaaa cgtgtagagc gcacatgaaa attatcggcg cagtggcggc
     8821 tcccagcacg gcattaaaaa actgtatggc cagcatattg cggccgatga ttcgataaat
     8881 gccggcaacc agatagacca ttccccaacc cgatcccaaa cctcggccga ggaatgaatc
     8941 gacgacgaac tgggcggatc ggttcccacc ccaggcggcc agttgttgtg cgccgaagta
     9001 gtcgtatgtc caagcatcac cgccaaaaaa gtcctggccc ttgaatacga atatggcggt
     9061 gcctatcgcc actctcaaca gcagcgccag cgcgaataaa tttaagagat atgaaccatg
     9121 gttctcagcg cggcgaatca ataaccctgc gatcgttgcc agcacgaaac aagaaagcac
     9181 ggcccgcgcg caatcgtaga tggttaccga cccatacaat ggggcataag gcgccgccag
     9241 cgtcggcacc agcaccagga ttgaaatagc cagcgccagc gccagaaaag tgataatggc
     9301 tttcatgcgt gagtctgcac tctcagatat cgtcaggtag atcgggacgc gtcttgcgct
     9361 cgatcaggaa tctgtcttcg gaactcagtt cctttattgg ttttgcgggc accccggcaa
     9421 tcagccagcc gtcggtttcg atctttccgg ttattacggc gccgattcct actacgcatc
     9481 gcgagggaag cgaaccaccg ggtgccatgc ggatttctga tcccagatac gcgaagtcgc
     9541 cgatgctgat cggcagcgtc cgttggcgat tgtgtgtcca cagggaagag ttgcgtccgc
     9601 cgatgatcgt tcgtcgccca atttcaactc ggtcggtgaa gtcaatcttg tggcccgtcg
     9661 taatgatact tccagcgccg agcgagaagc gcggttcgac cgcgttcacc acgtcgggat
     9721 cgggaatgga gtttatctca ttcatccgta tcagctctga gtaccgctcc agggtcactt
     9781 catcgccccc gcgaattatg ttcaggtgcc caatgcgcac gtgatctccg acggtcaact
     9841 tctttacgcc gacgaccaca ttgaaatgtc caatccgcac gtcatcatcg atatagcatt
     9901 cctgcgcgtc aataatactg aacccaagcc ggacgcgttt gccaacccgg taaccaaaga
     9961 acagccggta acatggtcgc atcagaaacg acggcagcac cgcaatcaag gccagcacaa
    10021 gcaaccgaaa tttgcttact cgatgcatcg gggatctggt ccgtgggcgc gtcgccccga
    10081 gagtggtctc tcgtttacct taccaactgc cgcgtctcca attccgcagt ggccttgctc
    10141 acctggtctt ccggttcctg acggctcacc cactgcaaca actccggtat cccttgttca
    10201 agccgcacgc ggggttcgta gcccagcaag gcgcgcgccc gcgagatgtc cgcgacgcag
    10261 tggcgaatgt caccctcgcg gtacttcgca acaatttcgg gctcgagact ttttcccaac
    10321 ccctgggcca gcagccgcgc gatttgccgc accgaagttg ccactcccgt gcccacgttg
    10381 accgcctggt agtccgcccc atttgcttcg agcgcgcgca gatttgcctg cacgatatcg
    10441 ctgacgtgca caaagtcgcg cgtctgttcg ccgtcttcaa agatcaacgg gcgctggtca
    10501 ttgagcaatc tggcggagaa gatggcgcac acacccgtgt acggattcga aagagcctgc
    10561 ctcggcccgt agacgttgaa gtaacgcagc gcgacggtgg gaattccata agcgcgccca
    10621 accaccagac agaattgttc ctggtcctgt ttcgtgatcg cataaataga agtgggaaac
    10681 aaaggtttgt tttcactcgt gccggaaggc gtgagctgcg cgccgcaact cggacactcc
    10741 atctcccaac gacgggcaag caactgcgcg gccggccgca gttgtggata tacttctccg
    10801 cagcttccgc acgtgtacgg tccttcaccg taaatcgaca tcgacgaagc aacgacgagc
    10861 ttcctgactc gcggcttatg ttcgatgagg ttctccaaaa gtacagccgt gcccagatcg
    10921 ttggcgcgga cgtaacgctg aatctcgtac atcgactggc cgacgcccac ctctgccgcc
    10981 tcgtggaaga ccgcatcgat gccgtgtaac gcgcgctgga ttacctgcgc gtcgcctacg
    11041 tctccgtgaa tgaactccgc ggccggatta agatactgcg ccgggcctgc gccatgaact
    11101 tgaggtacca gcaggtccag cacccgcacg cgatggcccc gctcgaccag cgcatccgtc
    11161 agatgtgaac cgatgaaacc agcgccgcca gtaaccagta tgttgagctt ttccaaggtg
    11221 atccttttgc ttttaagcag aagcccgacc gtcagggagg g
//
LOCUS       DASZZE010000474         2604 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_241994, whole genome shotgun sequence.
ACCESSION   DASZZE010000474 DASZZE010000000
VERSION     DASZZE010000474.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2604
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_241994"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1052
                     /locus_tag="VHD88_09225"
     CDS             <1..1052
                     /locus_tag="VHD88_09225"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HVS22015.1"
                     /translation="SLMPELAKKLDEIVPVQRPTRTHFANSGTEAVETALKLAMHATG
                     REKFISFFGSFHGRTLGSLSLTSSKAAQRVGFKRQALDVVHVPYPNEYRNPFRDDECG
                     DGGAGQGALNWIENRLFKTTTPPEEVAAIIVEPVQGEGGYLPAPKGFLNGLRRICDEH
                     GILLVADEVQSGMGRTGKMFACEHYDVKADIVCIAKGIASGLPLGACVSRADLMNWKP
                     GAHASTFGGNPVAIASALKTIELLQRELVGNSADVGAYLKTGLEKLMSKHDCIGDVRG
                     MGMMLGVEFVKDRATKQPDADLRDRVEVAVFERGLILLGCGPNSIRWSPPLILTRENV
                     DVALGIFDQAIAASI"
     gene            1135..1599
                     /locus_tag="VHD88_09230"
     CDS             1135..1599
                     /locus_tag="VHD88_09230"
                     /inference="COORDINATES: protein motif:HMM:NF015438.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HVS22016.1"
                     /translation="MFEGTVVSINIAPEAEAPMQSVSEARAVPGRGLEGDRYFDHKGT
                     FSKPQPDRELTLIEAEAIEAMKGELNVDYGLGDSRRNVVTRGVPLNHLVGREFWIGDV
                     KARGLRLCEPCSHLQKLSHEKVLPGLVHRGGLRAQILSEGVIRVGHTVKESV"
     gene            complement(1600..>2604)
                     /gene="tsaD"
                     /locus_tag="VHD88_09235"
     CDS             complement(1600..>2604)
                     /gene="tsaD"
                     /locus_tag="VHD88_09235"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: protein motif:HMM:TIGR03723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HVS22017.1"
                     /translation="IVSSVIASQIATHARFGGVVPELASREHLDKIVPIVEEAFTRTD
                     ITKDQIDGIAVTVGPGLIGSLLVGVSYAKAMAFALNKPLVGVNHIEGHIYSVCFENPP
                     VEHPALALIVSGGHTNLFYVPEPGKYKVVSRTRDDAAGEAFDKVAKLLGLGYPGGPII
                     EKLAREGNSKAVKFATPRMGDGRPDFSFSGLKTAVTKYVRESGLQPVSNGEEPSQGIK
                     DLAASFQGTVVRSLVTTMERVAKSYGPKTLIVAGGVACNGALREASRQAAAKLGLPVC
                     FPSPHLSTDNAAMIAAAGTVKLQAGERAGWDLNADVMLRLQNVDVEDEELRKRVRYRL
                     "
BASE COUNT          543 a          748 c          773 g          540 t
ORIGIN      
        1 actcgctcat gccggagctg gccaaaaagc tcgacgagat cgttcccgtg cagcgtccga
       61 cacgcacgca tttcgcgaac agcggcactg aagcagtcga gacggcgcta aagttggcga
      121 tgcacgcgac cggccgcgaa aagttcattt cgttttttgg cagctttcac gggcgcacgc
      181 tgggctcgct ttcgctcact tcgtcgaaag cggcgcagcg agttggattc aagcggcagg
      241 cgctcgacgt cgtccacgta ccctacccga atgaataccg caatccgttc cgcgacgatg
      301 agtgcggcga cggcggcgcg ggtcagggcg cgctcaactg gatcgagaat cgtctgttca
      361 agacgacgac tccgccggaa gaagtcgccg cgatcatcgt cgagccagtg caaggtgaag
      421 gcggttactt gcctgctccg aaaggattct tgaatggtct tcgtcgcatc tgcgacgagc
      481 acggaattct gctggttgcc gatgaagtgc agagcggcat gggtcgcacg ggcaagatgt
      541 tcgcgtgcga gcattacgac gtgaaggccg acatcgtgtg catcgcgaaa ggcattgcgt
      601 cgggcttgcc gctcggcgcg tgcgtctcgc gcgctgactt gatgaactgg aaacccggcg
      661 ctcatgcatc gaccttcggc ggaaacccgg tcgcgattgc gtcagctctg aaaacgatcg
      721 aattgcttca acgcgaattg gtaggaaata gcgccgacgt tggggcttac ttaaagacgg
      781 ggcttgagaa gttgatgagc aagcatgact gcattggcga cgtgcgcggc atgggcatga
      841 tgctcggcgt tgagttcgtc aaggatcgtg cgacgaagca acccgacgcg gatttgcgcg
      901 accgcgtgga agtggccgtc tttgagcgcg gcttgattct gctaggctgc ggtccaaact
      961 cgattcgctg gtcaccgccg ctgattctga ctcgcgaaaa tgtcgatgtc gcgctgggga
     1021 ttttcgacca agccatcgct gcgtccatat aggtcagtac cacctgcgta aggggtgggt
     1081 cttgtcagta ccgcctgcgg tagcgggcgg gtttattcag aggagacatt ctttatgttc
     1141 gaaggcaccg tggtctcaat caatatcgcg cccgaagctg aagcccccat gcaatccgtt
     1201 agcgaagctc gcgccgttcc cggccggggc ctggaaggcg atcgctattt tgatcacaaa
     1261 ggaacttttt ctaagccgca gccggatcga gaactcaccc taatcgaagc tgaggcgatc
     1321 gaagcgatga agggcgaact aaacgttgac tatggactcg gcgacagccg gcgcaacgtc
     1381 gtgacgcgcg gcgtgccgtt gaatcatctc gttggccgcg aattctggat cggagacgtg
     1441 aaagcgcgcg gattgagatt gtgcgaacca tgttcgcatc tgcaaaagct ttcgcacgaa
     1501 aaagttctgc cgggcttagt gcatcgcggc ggtctgcgcg cgcaaattct gagcgaggga
     1561 gtgattcgcg tgggccatac agtcaaggaa tccgtatagt caaagccgat aacgcacgcg
     1621 ctttcgcaac tcttcgtcct caacatcgac attctgcaaa cgcaacatca catcagcgtt
     1681 taagtcccag cccgcgcgtt cacctgcctg caacttcacc gtgccggcgg cggcgatcat
     1741 cgccgcgttg tccgttgaaa gatgcggcga cgggaagcag accggcaagc ccaactttgc
     1801 cgcagcctga cgcgatgctt cgcgcaatgc cccgttgcaa gcgaccccac cggccacaat
     1861 caaagtcttc ggtccgtaac tttttgcgac acgttccatc gtcgtgacga gcgaacgcac
     1921 gacggtgccc tgaaagctcg cagccaaatc tttgattccc tgcgacggct cttcaccgtt
     1981 gctcacgggt tgcaggcctg actcgcgcac gtatttcgtc accgccgttt tcaatccgct
     2041 gaaactaaag tcgggacgac cgtcgcccat gcgtggagtt gcgaacttaa ctgctttcga
     2101 gttcccttct ctcgccagct tttcaatgat ggggccgccc ggatatccaa gaccgagcag
     2161 ctttgcgact ttgtcgaacg cttcgccggc cgcgtcgtca cgtgtgcggc tgacgacttt
     2221 gtatttgccc ggctcaggca catagaaaag attcgtgtgt ccgccagaga cgatcagcgc
     2281 cagcgcggga tgctcgaccg gcgggttttc aaagcagact gaatagatgt gcccttcgat
     2341 atgattgacg ccaaccagcg gcttgttcag cgcgaacgcc atggccttcg catacgagac
     2401 gccgaccagt aaagatccga tcaggccggg gccaacagtc actgcgatgc catcaatctg
     2461 gtccttcgtg atgtcagtgc gcgtgaacgc ttcttcgacg atgggaacaa tcttatcgag
     2521 gtgttcgcgt gaagcgagtt ccggcaccac cccgccaaag cgcgcgtgcg tggcgatctg
     2581 cgaagcgatc acggacgaaa ctat
//
LOCUS       DASZZE010000475         1502 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_260000, whole genome shotgun sequence.
ACCESSION   DASZZE010000475 DASZZE010000000
VERSION     DASZZE010000475.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1502
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_260000"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..723
                     /gene="panB"
                     /locus_tag="VHD88_09240"
     CDS             <1..723
                     /gene="panB"
                     /locus_tag="VHD88_09240"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: protein motif:HMM:TIGR00222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003864 - 3-methyl-2-oxobutanoate
                     hydroxymethyltransferase activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HVS22018.1"
                     /translation="GNTVPVTLEDILIHVKAVRRGVQRALLVADMPYGSFHTGENDTV
                     RGALRLIKEGGAEAVKLEGGRKRAKLVKRLVNEEIAVMGHIGLTPQSINQLGTYRVQG
                     KTADAARRLLDDAYALEEAGAFSIVLELVPREIAKLITESISIPTIGIGAGVHCDIQV
                     LVFHDLLGMAFGKLPRFVREYANLRETITDAVTRWAEDVRNGTYPSEQESYGLPADAA
                     AELNLRETGKEDRSQKPGVRSR"
     gene            801..>1502
                     /gene="panC"
                     /locus_tag="VHD88_09245"
     CDS             801..>1502
                     /gene="panC"
                     /locus_tag="VHD88_09245"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004592 - pantoate-beta-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HVS22019.1"
                     /translation="MEIITRRKRMSSVARKLRREENRTIGFVPTMGALHEGHLSLIHE
                     ARAMCDVVVVSIFVNPTQFGPTEDFNSYPRDLTRDSGMLAEYNVDYVFAPTVEEIYPP
                     GSSTFVTVEGLSDELEGASRPGHFRGVTTVVAILLNTIKPDFAFFGQKDAQQAIVIKQ
                     MVRDLAFSAEIVVLSTAREESGLARASRNDYLNDGERKAAAVLHQSLTRVSAAYEEGE
                     LSAARLIELVRSSIEK"
BASE COUNT          323 a          420 c          443 g          316 t
ORIGIN      
        1 ggcaacacgg taccagtcac gctcgaagat attctgattc acgtaaaggc cgtgcgccgc
       61 ggagtgcagc gcgcgctgct ggtcgccgac atgccgtacg gatcgtttca taccggcgag
      121 aacgatacgg tgcgcggagc attgcgcctt atcaaagaag gtggagctga agcggtcaag
      181 cttgaaggcg gacgcaagcg cgccaagttg gtcaagcgat tggtcaacga agaaatcgcg
      241 gtgatgggcc atatcggcct gacaccgcaa tcgatcaatc aactgggcac ttaccgcgtt
      301 cagggcaaga ccgctgatgc cgcgcgccgt ctgctcgacg acgcttacgc cctggaagaa
      361 gccggagcgt tttcgatcgt cttagagtta gtgccgcgcg aaattgcaaa gctgattact
      421 gaaagcatca gcattcccac catcggcatc ggcgccggcg tgcattgcga catccaggtg
      481 ttagtgtttc atgatttgct gggtatggcg ttcggaaagt tgccgcgctt tgtgcgcgag
      541 tacgcgaacc tgcgcgagac gatcaccgac gccgtcactc gctgggccga agacgtgcgc
      601 aatggaactt atccttccga gcaggaatcc tacggcctgc ccgccgacgc cgccgcggaa
      661 ttgaatcttc gcgaaaccgg caaggaagac aggagtcaga agccaggagt caggagtcga
      721 taaccggacg gaaaagccag gtccgatccc gatcgctttt cttctgacta ctgtctcctg
      781 acttctggct tctctttttt atggaaatca ttacccgtcg caagcgcatg agttcggttg
      841 cgcgcaaact gcgccgcgaa gagaatcgaa ccataggctt cgtgccgacg atgggcgcgc
      901 tccatgaagg gcatctcagc ctaatccacg aagcgcgcgc gatgtgcgat gtcgtggttg
      961 tctcaatatt cgtaaatcca acgcagttcg gtccgaccga agatttcaat tcttacccgc
     1021 gcgatcttac tcgcgactca gggatgctgg ctgaatacaa cgtcgattac gtttttgcgc
     1081 caaccgtcga agagatttat ccgccgggct cttcgacctt cgttacggtc gagggattgt
     1141 ccgatgaact cgaaggcgcg tcgcggccgg gtcactttcg cggcgtgact accgtggtcg
     1201 cgattctgct caacaccatc aagcctgact ttgctttctt tggtcagaag gacgcgcaac
     1261 aggcgattgt catcaaacag atggttcgcg atcttgcctt cagcgccgag atcgttgtct
     1321 tgtcgaccgc gcgcgaagag tccgggctgg cgcgtgcttc gcgcaacgac tatttgaacg
     1381 acggcgagag aaaagccgcc gccgttctgc accagagcct gacgcgagtt tccgcggcct
     1441 acgaagaagg cgagctgagc gccgcgcgtt tgatagaact tgtgcggtcg agtatcgaga
     1501 ag
//
LOCUS       DASZZE010000476         2756 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_308303, whole genome shotgun sequence.
ACCESSION   DASZZE010000476 DASZZE010000000
VERSION     DASZZE010000476.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2756)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2756)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2756
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_308303"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2016)
                     /gene="ppsA"
                     /locus_tag="VHD88_09250"
     CDS             complement(<1..2016)
                     /gene="ppsA"
                     /locus_tag="VHD88_09250"
                     /EC_number="2.7.9.2"
                     /inference="COORDINATES: protein motif:HMM:NF005057.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008986 - pyruvate, water dikinase
                     activity [Evidence IEA];
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0006090 - pyruvate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate synthase"
                     /protein_id="HVS22020.1"
                     /translation="MKKGARPLVLDLSEVGADDVQLVGGKCASLGELLRALAPQGVRA
                     VDGFATTSEAYRLLLEADSLGKRLRELMSGLDYEDINALNVAGREARALMLDTPLPRE
                     VHEAIIDAYCRLSERVGRSCEVAVRSSATAEDLPEASFAGQQDTILNVREDRLIDACH
                     RCFASLWTDRAISYRAARGFDHFDVSLSIGVQPMVRSDQACSGVMFTLDTESGFRDVV
                     VINGAWGLGEAIVQGMATPDEWIVFKPTLAAGARPIVSRNLGSKEVKMVYGLDNKGTR
                     TRDVVEAQRQRFCLSDYEVLQLSRWACLIEAHYSERAGRATPMDIEWAKDGHTGELFI
                     LQARPETVHATNHENYIEIHRLTGEHGAPLATGIAVGEKIGQGHVHVLADPGHLAEFQ
                     DGAVLVTSMTDPAWEPIMKKAAAIVTDRGGRTCHSAIVSRELGLPCIVGTGNGTQVLQ
                     SGMDVTVCCADGSRGSIYEGLIDFAVEKRVFGKEQRPRTQVMMNVGDPDHAFALSALP
                     NDGVGLARLEFIINNHIGIHPMALVRYPHLQKPDVVREIERRIGEEDPREFFVRRLSE
                     GIGRIAAAFYPNPVIVRMSDFKSNEYAMLIGGQEFEPAEENPMLGFRGASRYYDERYR
                     EGFHLECLALQRVREEMGLINVKAMIPFCRTVEEAERVIALMAEFGLK"
     gene            2408..>2756
                     /locus_tag="VHD88_09255"
     CDS             2408..>2756
                     /locus_tag="VHD88_09255"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: protein motif:HMM:NF015290.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042132 - fructose 1,6-bisphosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_process: GO:0006071 - glycerol metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-bisphosphatase class II"
                     /protein_id="HVS22021.1"
                     /translation="MAPELRTERELSLDFLRVTEAAAIAAARTMGQGDRKYSDQVAVE
                     AMREVMDSVPMRGRIVIGEGERDEAPMLFIGEEVGGGFGVGEEMAASCPEVDIAVDPL
                     EGTNLCALGANNAI"
BASE COUNT          585 a          815 c          770 g          586 t
ORIGIN      
        1 tttcaaacca aactcggcca ttaaagcaat aacgcgctcg gcttcttcga ccgtgcggca
       61 gaagggaatc atcgctttga cgttaatcag gcccatctct tcgcgcacgc gctgcagcgc
      121 caggcattcc aagtgaaatc cttcgcgata gcgttcgtcg tagtaacgcg atgcgccgcg
      181 aaaaccgagc atcgggttct cttcggctgg ttcgaattcc tgtccgccga tcagcatcgc
      241 atattcattc gatttgaaat ctgacatgcg cacgattaca ggattgggat agaaagccgc
      301 ggcaatccga ccgatgccct ctgacagacg gcgcacgaaa aactcgcgcg ggtcttcttc
      361 gccgatgcgt cgttcgatct cgcgcacaac atccggcttt tgcagatgcg gatagcgaac
      421 cagggccatc gggtgaatgc cgatatggtt gttgatgata aattccaggc gcgccagtcc
      481 cacgccgtcg ttaggcaggg cagagagcgc gaaagcgtga tcaggatcgc cgacgttcat
      541 catcacctgg gttcggggcc gctgttcttt gccgaaaaca cgcttttcta cagcgaagtc
      601 gatcagacct tcgtagatac ttccgcggga accgtcggca cagcatacgg tcacgtccat
      661 tcccgactgc aacacctgcg tcccgttccc ggtgccgacg atgcaaggca gccctaactc
      721 gcggctgacg atggcgctgt gacaggtgcg accgccacga tcggttacga tcgccgccgc
      781 ctttttcatg attggctccc acgctggatc ggtcatcgaa gtcaccaaaa ccgctccgtc
      841 ctgaaactca gcgagatgac ccggatcggc gaggacgtgc acatgcccct gtccaatctt
      901 ttcgcccacg gcgattccag tggccaatgg cgcgccatgc tcgcccgtga gtctgtggat
      961 ctcgatgtag ttttcatgat tcgtcgcgtg gactgtttca ggtctagcct gaagtatgaa
     1021 gagttcaccg gtatggccat ccttggccca ttcaatgtcc attggcgtcg cgcgtccagc
     1081 ccgttcggaa tagtgcgctt cgatgaggca agcccagcgc gacagttgca gcacttcata
     1141 atcgctgaga caaaatcttt gacgttgcgc ttccacaacg tcgcgagtgc gggttccttt
     1201 gttgtcgagg ccatagacca tcttcacttc tttgctaccg agattgcggc tgacgatcgg
     1261 gcgcgcgccg gctgccagcg tcggcttgaa gacgatccat tcatcgggtg ttgccatccc
     1321 ctgcacaatt gcttctccca agccccaggc gccgttaatg accaccacgt cgcgaaagcc
     1381 tgattcggtg tcaagtgtaa acatcacgcc cgagcaggct tgatccgaac gcaccatcgg
     1441 ttgcacgcca attgaaagcg acacgtcgaa atgatcaaag ccgcgagcag cacggtagga
     1501 aattgcccga tcggtccaga gcgaggcgaa gcaacggtgg cacgcatcga tcagtcgatc
     1561 ctcgcggacg ttcaggatcg tgtcctgctg tccggcgaac gaggcctcgg gaagatcttc
     1621 ggcggtagcg gaggatcgca ctgctacttc acaactacgc ccgacccgct cggacaaacg
     1681 acaataggcg tcgatgattg cttcatggac ttcgcgcggc agtggcgtgt cgagcatcag
     1741 ggcccgcgcc tcgcgccccg caacgttcaa cgcatttatg tcttcgtagt cgagcccgct
     1801 catcagctcg cgcagacgct tccccaggct gtcggcttca agcaacaagc ggtacgcctc
     1861 gctggtcgta gcaaagccgt caacagcgcg cactccttgg ggcgccaaag cgcgaagcag
     1921 ttcgccgaga cttgcgcact tgccacccac aagctgcaca tcgtcggctc cgacttcact
     1981 caagtccagc acgagaggtc tcgcaccttt tttcattttc attccctccg gcgaccctgc
     2041 ttcgtttccg accgtactga acgaatgggt atcagaacgg gcttcccgaa gactttgctt
     2101 gcggatcagc gccgcacatt attaatgaat gctggcaaaa tgattatgag ttctcttgga
     2161 gaataatacg aacactgaga cgtttccagt gatcgcgcgc atgaactcgg tcacggtcgc
     2221 tgcagcgatc gcggcaaaaa tgccatacga tcccattggg agcgcccccg gtcggatttc
     2281 ttggctcgtt ctcttacctt gaaagaacta caaaatcggg tgttcctctg ctactatgtc
     2341 cgcgattttt caaacggaca actttagtcg gcgcggttgc ggataacact gcgcatagga
     2401 gacggagatg gcgccagagt taaggacaga acgcgagctg tcactcgatt ttttgcgcgt
     2461 gaccgaagcg gcggcgattg ccgcggcgcg cacgatgggc cagggcgatc gaaaatattc
     2521 ggatcaagtc gcggtcgaag cgatgcgcga agtaatggac tctgtgccga tgcgcggccg
     2581 aatcgtgatt ggcgaaggcg agcgcgacga agccccaatg cttttcatcg gcgaagaagt
     2641 cggcggcgga ttcggcgtcg gcgaagagat ggctgcgtct tgtcccgaag tagatatcgc
     2701 cgtcgatccg cttgaaggca cgaacctgtg cgcgcttggc gcgaacaatg cgatcg
//
LOCUS       DASZZE010000477         3268 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_308306, whole genome shotgun sequence.
ACCESSION   DASZZE010000477 DASZZE010000000
VERSION     DASZZE010000477.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3268)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3268)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3268
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_308306"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..551
                     /locus_tag="VHD88_09260"
     CDS             <1..551
                     /locus_tag="VHD88_09260"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HVS22022.1"
                     /translation="DPPAHAGGTDLIGDASGETKMDLGLKGKVALVAAASRGLGRAVA
                     AELATQGASLVLCSRNAEAINRTANEITQATGADVLAIPADVSKSEDVGRLVQSGIDR
                     FGRIDILVTNAGGPPAGQFESLSSEAWEAATHLTLYSAIELARRVLPGMKERRWGRIL
                     NITSIAVKQPVENLHVSIKLRK"
     gene            complement(1301..1903)
                     /locus_tag="VHD88_09265"
     CDS             complement(1301..1903)
                     /locus_tag="VHD88_09265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS22023.1"
                     /translation="MNPTRSLIFVLVIVAVSFGSAVAQVRGRRIPPPREFQVFEPRNQ
                     LEDFESRLETVLIKGHTSVGIFNGRAGGAVRVEALEMREAGDGTRALGAVITINSGDA
                     TPTEARSLIDYDEIDRLIKGLDTVAKADDTITKLAQYEAHYRTKVDFEITVFKQTTGG
                     VAAAIEAGFPDRTRLLLTLDDLARLRWMILQAKARLDEIK"
     gene            complement(2071..>3268)
                     /locus_tag="VHD88_09270"
     CDS             complement(2071..>3268)
                     /locus_tag="VHD88_09270"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF017200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="S16 family serine protease"
                     /protein_id="HVS22024.1"
                     /translation="IIQSIRRAGVNNPVMMLDEIDKLGADYRGDPAAALLEILDLEQN
                     NSFTDHYLDLPFDLSKAFFIGTANQLGPIPPPLRDRMEVIHLAGYSDREKLEIAKKYL
                     APRQVRENGLTPEQFEITDDAIKLVAGRYTREAGVRQLERNIGRVARKVALKVAQGQT
                     EKIVVDADAIHDYLGSPKFYPEEARKELPAGVATGMAVTEMGGEILFIEASLLPGGSG
                     LTITGQLGEVMQESARAARSYLWAHAQEFGISTEMFKEYGVHLHVPAGAIPKDGPSAG
                     VTITAALSSLYTGRRVRPDTSMTGEITLSGLVFPVGGIKEKVLAAHRAGIHRIILPAR
                     NEADLEDIPEDVRRELEIVPVNRINEVVDAALEKFVANPPPPLPLRDSTHDRPREPEP
                     MMARER"
BASE COUNT          678 a          931 c          951 g          708 t
ORIGIN      
        1 ttgatccacc cgctcacgcg ggtggtactg acctcatcgg tgacgcgagt ggtgaaacca
       61 aaatggatct gggcttaaaa ggaaaagttg ctctagtcgc cgctgccagc cgcgggttgg
      121 gccgcgctgt cgctgcagaa ctcgccaccc aaggtgcttc acttgttctg tgttcgcgca
      181 acgcagaggc gattaacaga actgcgaatg agatcacgca agcaacgggc gcggacgtgc
      241 tggcgatacc tgctgatgtt tctaaatccg aggatgtcgg gcgcctcgtg caatccggga
      301 tcgataggtt cgggcgcatc gatattctag tgacgaacgc gggcggtccg cctgccgggc
      361 aattcgaaag tttgagtagc gaagcgtggg aagcggcgac ccatttgacg ctttacagcg
      421 cgatcgagct agcgcggcgc gttttaccag gaatgaaaga gcgacgctgg ggccgcatcc
      481 tgaacatcac ttcgatcgcc gtgaagcagc cggtggaaaa cctccacgtc tcgatcaagt
      541 taaggaagta acgccgagtc cgaagggatg cgaagactgt ctgaaaatag gcgacgtgtg
      601 ggtgcatctg cgcctctgca tggcgtgcgg ccgcgttggt tgctgcgact cttcaaagaa
      661 taaacatgcg acgcgccatt ttcattcgac gaatcatccg atcatcaaat catttcaacc
      721 cggagaggac tggggctggt gctatgtcga tgaaatgatg gatctaaggc gatgtcatta
      781 tgacagtgtt tcgttagtgg ccagcggtag tccgcgcagc ggacggatgg taatagccca
      841 gcaattcatt gctgggatcg taagcgagta gttaccaaca tagtccgtga aacggacgac
      901 tgaaagattc tgtcgcccgc ttcgcgggct tctttcttat tcttgcaagt tacccagctg
      961 aagcgctggg ctattttcgt tcgtccgcta cgcggactgt tgaaaatgcg tttcgagtac
     1021 agaagcgcaa gcggtagcga gcggatgcca acgctcaatt ttggcggcgc agaccagaaa
     1081 gccaacgact cgcgacttga gtgttcgcac ccggtcgcta tcgctcccgg ttctgtaacc
     1141 tcatctgtcg ccaaggttcc gagttgcgcg aacgatcggc agcttccaac cttcaatcgg
     1201 actccgttcg acatagaagt tgatgcaccg cgctccgtcg tttcaaggga agatcgatct
     1261 ggctactctc cgactcctgg cccccgaccc cgaccctgtt ttacttgatc tcgtccagcc
     1321 tggcctttgc ctgcaggatc atccaacgga gtcttgcgag atcgtcgagc gtcagcaata
     1381 agcgggttcg gtccgggaat ccggcttcga ttgccgccgc gacaccgccg gtcgtttgtt
     1441 tgaagacagt aatttcgaaa tcgactttcg tgcgatagtg ggcctcgtac tgggccagct
     1501 tcgtgatcgt atcatccgcc ttggcgaccg tgtccagacc tttgattagc cgatcgatct
     1561 cgtcgtagtc gatcaaagag cgcgcttcgg ttggcgtcgc atcgccagag ttaatcgtga
     1621 tcactgcgcc gagggcgcgc gttccatcgc cggcctcgcg catctccagc gcctcgacgc
     1681 gaacagcgcc gccggcgcgg ccattaaaga taccgacgct cgtgtgacct ttgatcagca
     1741 cggtctcaag tcgcgactca aaatcttcta actggtttcg cggctcgaat acctgaaact
     1801 cccgcggcgg cggtatgcgc cggccacgaa cctgagccac ggccgagcca aaagacactg
     1861 caacgatcac caacacaaag attagcgagc gagtcgggtt catgatggga ctcccttaga
     1921 ctgattcaga ttcgaaaaac ctgtggagag ttcgggagag aataacttgt tggaagaact
     1981 tgcgaaaacg caacgggttc caaaaacatt cttgaaagag caccggcaag gatgccgatg
     2041 gtccgcaggc aagatgcctg cgctcccatt ctaccgctcc cgcgccatca tcggttccgg
     2101 ctcacgcgga cgatcatgag tcgaatctct gagaggcagc ggaggcggtg gattggcgac
     2161 gaatttctcc agcgcggcgt caactacttc gttgatgcga ttgaccggaa cgatctccag
     2221 ttcgcggcgc acgtcttcgg gaatgtcttc gaggtcggct tcattgcgcg caggcagaat
     2281 gatgcgatga atgccggcgc gatgcgcggc caagactttt tctttgatgc cgccgaccgg
     2341 gaacactaaa cccgagagag ttatctctcc agtcatcgac gtgtcggggc ggacgcgacg
     2401 accggtgtaa agcgacgaaa gcgcggcggt gatcgttacg cccgcgctgg ggccgtcttt
     2461 cggaatcgcg cccgccggaa cgtgcagatg cacgccgtac tctttgaaca tttcggtgct
     2521 gatgccgaac tcctgcgcat gtgcccacag gtaagagcgc gcggcgcgcg ccgattcctg
     2581 catcacttcg ccgagctgac cggtgatcgt caggccgctg ccgcccggca acaacgacgc
     2641 ttcgataaac agaatctcgc cacccatctc ggtcacggcc atgcccgtgg caactccggc
     2701 cggcaattct ttgcgcgctt cttcgggata gaacttcggc gagccgagat aatcgtgaat
     2761 tgcgtccgca tcgacgacga tcttttccgt ctgtccctgg gcaactttca gcgcgacttt
     2821 gcgcgcgacg cggccgatgt tgcgttcaag ctggcgaacg ccggcttcgc gcgtgtagcg
     2881 gcccgcgacg agtttgattg cgtcatccgt gatctcaaac tgctcgggcg ttagtccgtt
     2941 ctcgcgcact tgtcgcggcg ccagatactt ctttgcgatc tccagtttct cgcgatcgct
     3001 gtagccggcg agatggatca cttccatgcg atcgcgcagc ggcggtggaa ttggcccaag
     3061 ctgattcgcc gtgccgatga agaaagcctt cgacaagtcg aatggcaagt cgagatagtg
     3121 atcggtgaac gagttgtttt gttctagatc caaaatctct aacagtgccg ccgccggatc
     3181 gccgcgatag tccgcgccca gcttgtcgat ttcgtcgagc atcattaccg gattgttcac
     3241 gccggcgcgg cgaatcgact gaatgatg
//
LOCUS       DASZZE010000478         2212 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_308609, whole genome shotgun sequence.
ACCESSION   DASZZE010000478 DASZZE010000000
VERSION     DASZZE010000478.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2212)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2212)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2212
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_308609"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2212
                     /gene="carB"
                     /locus_tag="VHD88_09275"
     CDS             <1..>2212
                     /gene="carB"
                     /locus_tag="VHD88_09275"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: protein motif:HMM:NF003671.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HVS22025.1"
                     /translation="AMDEAGLQMPRGGFAKSWSDAEVIVEQTGYPAIIRPSFTLGGTG
                     AGTAFNPEEFEETVRNGLAASPIHEVLIEESILGWKEFELEVMRDLADNVVIICSIEN
                     FDPMGVHTGDSITVAPAQTLTDREYQTMRDMAITIIRKVGVETGGSNIQFAVNPENGD
                     IRVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDEIPNDITKKTPASFEPTID
                     YVVTKIPKWNFEKFREAEDVLGTQMKSVGEVMAIGRTFKESLFKGLRSLEAVKPLRLE
                     DVSNDELQRKLARPNSQRFSYITYALEHGWAIEEIYRLSRIDPWFLDQVKQVMEIQEQ
                     IEGKKLEEIPLDLLRAFKEAALSDRRLAYLTKRTEDEVRAYRKELGLIPVYKRVDTCG
                     AEFESFTPYLYSTYEEEDEVQATDRPKIMILGSGPNRIGQGIEFDYCCCHASFALHEA
                     GFETIMVNCNPETVSTDYDTSDRLYFEPLTFEDVMNIVDVEKPTGVIVQFGGQTPLNL
                     AMRLHDAGVPIIGTSPDSIDLAEDRKRFGALLNELGIPQPENGTATSVEKARGIAARI
                     GYPVLVRPSYVLGGRAMAIVYDEESLDEYMRNAVDFSHDRPVLIDKFLEQAAEFDVDA
                     LADDSDCVIAGIQEHIEEAGIHSGDSSCVLPPVRIAEEHLDTMRHYTRRLASALTVKG
                     LMNIQFAIRDDRVYVLEVNPRASRTVPFVSKATGVPLARIGALVMAGRPLKDFG"
BASE COUNT          512 a          598 c          630 g          472 t
ORIGIN      
        1 aagcgatgga cgaagcgggt ttgcaaatgc cgcgcggtgg attcgccaag tcatggtcgg
       61 acgctgaagt gatcgtggaa caaaccggct atcccgcgat cattcgcccg tcgtttactt
      121 taggcggcac gggcgccggc acggctttca acccggaaga gtttgaagag actgtgcgca
      181 acggcctcgc tgcttccccg attcacgaag tcctgattga agaatcgatc ctcggatgga
      241 aggagttcga gttggaagta atgcgcgacc tcgcggacaa cgtcgtgatc atctgctcga
      301 ttgaaaactt cgatccgatg ggcgtgcaca ccggcgattc gatcacagtc gcaccggccc
      361 agacgctgac cgatcgcgaa tatcagacga tgcgcgacat ggcgattacg atcattcgca
      421 aagtcggcgt cgagaccggc ggctcgaaca ttcagttcgc ggtcaatccg gaaaacggcg
      481 acatccgcgt catcgaaatg aatccgcgcg tgtcgcgctc gtccgcgctg gcttcgaaag
      541 ccaccggttt tccgattgcg aagattgcgg cgaagctcgc cgttggttac acgctcgatg
      601 aaatcccgaa cgacatcaca aagaaaacgc cggcatcgtt cgaaccaact atcgattacg
      661 ttgtcacaaa gattcccaaa tggaattttg aaaagtttcg cgaggccgaa gacgtgctcg
      721 gcacgcagat gaagtcggta ggcgaagtca tggccatcgg ccgcacgttc aaggaatcgc
      781 tcttcaaggg gctccgttcg ttggaagccg taaagccttt gcgcctcgaa gatgtttcca
      841 atgacgagct gcaaagaaaa ctcgcgcgtc caaactcgca acgcttctcg tacatcacct
      901 acgcgctcga gcacggctgg gcgatcgaag aaatttatcg cctgtcgcgc atcgatccgt
      961 ggtttttgga tcaagtcaaa caggtgatgg agattcagga gcagatcgaa ggtaagaagc
     1021 tggaagagat tccgcttgat cttttgcgtg cattcaaaga agcagcgctt tccgatcggc
     1081 gcctggctta cttgaccaag cgcactgaag acgaagtccg agcttatcgt aaggaacttg
     1141 gtctaattcc cgtctataaa cgcgtggaca cttgcggcgc cgagtttgaa tctttcacgc
     1201 cttatttgta ttcgacctat gaagaggaag acgaagtaca agcaaccgat cgaccaaaga
     1261 tcatgattct cggttcagga ccgaatcgga ttggtcaggg gatcgagttc gattactgct
     1321 gctgccatgc gtcgttcgcg ctgcacgaag ccggcttcga gacgatcatg gtcaactgca
     1381 atccggaaac tgtttcgact gattacgaca cttctgatcg cctgtacttc gagccgctca
     1441 cgttcgaaga cgtgatgaac atcgtcgatg tcgagaagcc caccggcgtg atcgtgcagt
     1501 tcggcggcca gactcctttg aatctggcga tgcgtctgca cgacgccggc gtgccaatca
     1561 ttggtacgtc acctgactcg attgatctcg ctgaagatcg aaagcgcttt ggcgcattgc
     1621 tcaatgaact gggaattccg caacctgaga atgggactgc aacttcagtc gaaaaggcgc
     1681 gggggattgc cgcgcgcatc ggctacccgg tgctcgtgcg accgagttac gtgcttggcg
     1741 gacgcgcgat ggcgatcgtt tatgacgaag aaagtctgga cgaatacatg cgcaatgccg
     1801 ttgatttctc acacgatcgg ccggtcttga tcgacaaatt tctcgaacaa gccgcggagt
     1861 ttgacgtcga cgcgctcgct gacgacagcg actgcgtcat cgccggaatc caggaacaca
     1921 tcgaagaagc gggaatccac tctggtgatt cgtcatgcgt gctgccgccg gtgcgcatcg
     1981 ccgaagagca tctcgacacg atgcgacact acacgcgcag gctggccagc gcactgacag
     2041 tcaaaggtct gatgaacatt cagttcgcga tcagagacga tcgcgtctat gtgctggaag
     2101 ttaatccgcg cgcgtcgcgc acagtgccgt tcgtttcgaa agcgaccggt gtcccactcg
     2161 cgcgtattgg cgcgctggtg atggcgggac gcccgctcaa agattttggc tt
//
LOCUS       DASZZE010000479         4349 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_242477, whole genome shotgun sequence.
ACCESSION   DASZZE010000479 DASZZE010000000
VERSION     DASZZE010000479.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4349)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4349)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4349
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_242477"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..815)
                     /locus_tag="VHD88_09280"
     CDS             complement(<1..815)
                     /locus_tag="VHD88_09280"
                     /inference="COORDINATES: protein motif:HMM:NF013499.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OB-fold nucleic acid binding domain-containing
                     protein"
                     /protein_id="HVS22026.1"
                     /translation="MSDTDLQNIIPDNDQTLARREHLEALRALVGNVYPNKFARSSVT
                     DNSAGEDTISSVVEKFKNFEPQVSEGSKPLPEALESANAELNKVRVRVAGRIAAPPRV
                     MGKAAFVHLSDGTSRLQIYVRRQDVVGMRNDADGGDVDGWELFGLLDHGDFIGVEGYL
                     FVTKTGELSVHVEKLHFLAKALLPMPDKMHGIHDPEIRQRQRYADLIAGSLKIKNPDE
                     EEKEGDRRDLSPREVFELRSRVIREIRRFLDDHGYIEVETPMLTPLATGAAARP"
     gene            1064..1546
                     /gene="rfaE2"
                     /locus_tag="VHD88_09285"
     CDS             1064..1546
                     /gene="rfaE2"
                     /locus_tag="VHD88_09285"
                     /inference="COORDINATES: protein motif:HMM:TIGR02199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1-phosphate
                     adenylyltransferase"
                     /protein_id="HVS22027.1"
                     /translation="MSTTKILVRENLLAERSRLRAAGTKLVFTNGVFDILHVGHVRYL
                     EQARALGDALLVAVNSDRTVRELKGSGRPLMEEKERAELLAALRAVSYVTIFDDVSPR
                     SLIAELLPDVLVKGGDYALDEIHGREEVEAAGGRVVSLPFVEGVSSTVIVERMKKNSR
                     "
     gene            1866..>4349
                     /locus_tag="VHD88_09290"
     CDS             1866..>4349
                     /locus_tag="VHD88_09290"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CarD family transcriptional regulator"
                     /protein_id="HVS22028.1"
                     /translation="MLQSTLNRVIETAECRRVADEIKRGARVVSISGLVSAPARALAM
                     AALQRETERSFAIVVAAQPDLETWERDLSFWYRALHAIDQRDDAVTILPASESDPFAG
                     ASPHAETLEKRALALWRLARHKPPLLLLTSRALARRTVSPSAILKAGAVLRRDEDTAP
                     EELVERLIACGYVREDPVRSVGEFSIRGGILDVWPPSSDAPARIEFFGDTVESIREFD
                     PETQLSTVQMAEIEIAPMRELAITARDFREWAARARQRWRDERFARSLRDRTVFAEED
                     ESFSGWEWLISIVHENTASVFDYLHDAVLVVDEPVAVENYLATAFKTLEERYAETDAA
                     DDLGLTPGELYLTAEELRAKIDSIQRLEMRALGRTAAKLDQELALDAEEPKVSVGKER
                     AQRRPLFLFPHAEMGGHSPPLNKTFEGRLEAGLVPPGRTSAPSKRGVGKSAEVEWKAQ
                     SVMRYHGRLPDLAREVIDRQAKSQATTLFVMPSGGVAERVAEILREYDVNARLTSLGD
                     RTDYSASSNAIVATGKLSDGFELPSARLVVHVEGDLFDDAAEPALERRSLAIKKQKAE
                     AKRKRTRAAAFLSDFRDLKVNDFVVHIDHGIARFGGLVTLDLGPTAPLLTRGFPPHEP
                     SPTAATRGEFMLLYYAEDAKLYVPVERLDLVQRYSSAEGHQPTLDRLGGIGWQKTKAK
                     ARRAMRDMADELLRLYAERKLVTGHAFPQDAPWQREFEGGFEYILTPDQETAIEDVKH
                     DMETPTPMDRLLCGDVGYGKTEVAMRAAFKAVMDGKQAAVLTPTTVLAYQHFDTFRQR
                     FAPFPVKIELLSRFRSSKEQKDVVKRVESG"
BASE COUNT          920 a         1201 c         1313 g          915 t
ORIGIN      
        1 ggacgcgcgg cggcaccggt ggccaggggc gtgagcatcg gtgtctcgac ttcgatgtag
       61 ccgtgatcgt cgagaaagcg gcgaatctcg cgaatcactc ttgagcgcaa ctcgaaaact
      121 tcgcgcggtg atagatcgcg gcggtcgcct tctttttctt cttcgtcggg gttcttgatt
      181 ttcaaactgc cggcaatcaa atcggcatag cgttgtcgct ggcgaatctc tggatcgtga
      241 atgccatgca tcttgtcggg catgggcagc agagcttttg ctaagaagtg caacttctca
      301 acatgcaccg acaactcgcc ggttttggtg acgaacagat aaccttcgac gccgataaaa
      361 tcgccgtgat cgagcaggcc gaaaagctcc cagccatcaa cgtcgcctcc gtcggcatcg
      421 ttgcgcatgc cgaccacgtc ctgccggcga acgtagatct gcaaacgcga cgtgccgtca
      481 gaaaggtgca cgaacgcagc tttgcccatc acgcgcggag gcgcggcgat gcgcccggca
      541 acgcgcacgc ggactttatt cagttcggca ttcgcagatt ccagcgcttc aggtaatggc
      601 tttgagcctt cggaaacttg cggctcgaag ttcttgaact tctccacgac cgaactgatc
      661 gtgtcttcgc cggccgaatt gtcggtaacg ctgctgcgcg caaacttatt cggataaacg
      721 ttgccgacaa gcgcgcgcaa agcctccagg tgctcgcgcc gcgcgagggt ctgatcattg
      781 tcagggataa tgttttgtaa gtctgtgtca gacaagaatc ttctccaata gataaaacac
      841 gaattataga gagcgcggcg aacgagcgca aacttcattt gatgagcgat taagcggggg
      901 caagcccacc ttcctgacct gtgaggttgc tccaacgcgg cgatgacatc cgatctagaa
      961 agcctttcaa cgcaacctga taaggatcaa ttcagaaagt ctcgcaggtt gggaaggcgg
     1021 gcttgccccc gctgtttgga aacgtgctag attgtttgtt cgcgtgtcca ccacaaagat
     1081 tctagttaga gaaaatctgc tcgccgaacg ctcgcggctg cgggccgcgg gcacgaagct
     1141 cgttttcaca aatggcgtct ttgacatttt gcacgttggc cacgtgcgtt atctcgagca
     1201 ggcgcgggcg ctgggcgacg cgctgctcgt tgctgtcaac agcgatcgca cagtgcgcga
     1261 gttgaagggc tcagggcggc ctttgatgga agagaaagaa cgcgcggaac ttctggccgc
     1321 actgcgcgcg gtcagttacg taacgatctt tgacgacgtt tcaccacgtt cgctgatcgc
     1381 agaattgctg ccggatgttc tggtgaaagg cggcgattat gcgcttgacg aaattcacgg
     1441 ccgcgaagaa gtcgaagctg ctggcgggcg tgttgttagc ttgccgttcg tcgaaggcgt
     1501 ttcgtcgact gtgatagttg agcgaatgaa gaaaaatagc agatgataag cgagaaccaa
     1561 gtagggtccg caaagcggac gacagagata gtctttggta cagaaccgcg agcggtagcg
     1621 accgggcgcc tgcactcaac ttgtgcctca ttggctctct gttgtgcgta ttcttccaag
     1681 ttgagagttg ggatccggtc gctaccgctc ccggttctgt atcttctgtc gcccgtttca
     1741 cgggcttcaa attctcttct tggcgttaac ccagcactga agtgctgggc tattgccgat
     1801 cgtccgcttc gcggactcct catcagcctt tgcctgtaat gagtactact tccgaatcaa
     1861 cctcaatgct tcaaagcacg ctgaatcgag ttatcgaaac cgcggaatgc cgccgtgtgg
     1921 ccgacgagat caaacgcggc gcgcgagtgg tttcgatcag tggcctggtc tctgctccgg
     1981 cgcgcgccct cgcgatggct gcgctgcaac gcgaaaccga aaggtcgttc gccatagtcg
     2041 tcgccgcgca acccgatctc gaaacatggg agcgcgactt aagtttctgg taccgcgcct
     2101 tgcatgcgat agatcaacgc gacgatgcag tcacgatatt gccggcctcg gaaagcgatc
     2161 cattcgccgg cgcttcgccg cacgccgaga ctttggaaaa gcgcgcgctc gcgctgtggc
     2221 gtctggcgcg gcacaaaccg cctcttctct tgctaacttc acgcgcgctg gcgcgacgca
     2281 ccgtttcgcc ctcagcaatt ttgaaagccg gcgcagtact gaggcgcgat gaagacaccg
     2341 cgccggaaga actagtcgaa agacttatcg cctgcggcta tgtgcgcgaa gacccggtgc
     2401 gtagcgtggg cgagttttca atccgaggcg gcattctcga cgtctggcca ccgagctcag
     2461 acgcgcctgc tcggatcgaa ttctttggcg acacggtcga atcgattcgt gagttcgatc
     2521 cggaaacgca actctcaacc gtccagatgg cggagatcga gatcgctccg atgcgtgagc
     2581 tcgcgatcac cgcgcgagat tttcgcgagt gggcggcgcg tgcgcgccag cgctggcgcg
     2641 atgaacgatt cgcgcgaagt ttgcgcgacc gaaccgtttt tgcggaagaa gacgagagct
     2701 tttccggttg ggaatggttg atttcaatcg ttcacgaaaa cacggcgagc gttttcgatt
     2761 atctgcacga cgcggtgctc gtcgttgatg agccggtcgc cgtcgagaac tatctcgcaa
     2821 ccgcttttaa gactctggaa gagcgttacg ccgagactga tgccgcggac gatctcggac
     2881 taacgccggg cgaactctat ctcactgcgg aagaattgcg cgcgaagatc gactccatac
     2941 aacgtttgga gatgcgcgcg ctcggtcgca cggcagcgaa gttggatcag gagttagctc
     3001 tcgatgccga agagccaaag gtttcggttg gcaaggagcg agcgcagcgg aggcctttgt
     3061 ttttgtttcc gcatgcggag atgggcgggc atagcccgcc tctaaacaaa acgtttgagg
     3121 gacgtttaga ggcgggactt gtcccgcccg ggcgcacaag tgcgccctct aaacgagggg
     3181 ttggaaaatc ggcggaggtc gaatggaaag cgcaatcggt gatgcgctat cacgggcgct
     3241 tgcccgatct cgcgcgcgaa gtaatcgatc ggcaagccaa atcgcaggcg acgacgctgt
     3301 tcgtgatgcc cagcggcgga gtcgccgagc gcgttgcgga aatcttgcgc gagtacgacg
     3361 tgaacgcacg cctcacttcg ctcggggata gaacggatta ctcggcttcg tcgaacgcga
     3421 tcgtcgccac cggaaaactt tcggacggat ttgaattgcc gtcggcgcgt ttggtcgtgc
     3481 atgtcgaagg cgatttattc gatgacgccg cagagcctgc gcttgagcgc cgcagtcttg
     3541 cgatcaagaa acagaaagcg gaagcgaaac gaaagcgcac gcgggccgcg gcgtttcttt
     3601 ctgactttcg cgatttgaaa gtcaatgact ttgtcgtgca catcgatcac ggcattgcgc
     3661 gatttggtgg actggtcaca ctcgacctgg gacctactgc gcccttgctt acgcgcgggt
     3721 ttccgccaca cgagccttcg ccaaccgcgg caacgcgcgg cgagttcatg ctgctttact
     3781 atgccgaaga cgcgaagctc tacgtgccgg tcgagcggct ggacctggtg caacgttatt
     3841 cgagtgcgga aggtcatcag ccgactctcg atcgtctcgg cggaatcggc tggcagaaaa
     3901 cgaaagcgaa agccaggcgc gcgatgcgcg acatggcaga cgaactgctg cgactgtacg
     3961 cggaacgcaa gctggttact ggtcacgcat ttccacaaga cgcgccgtgg caacgcgaat
     4021 tcgaaggagg cttcgaatac atactcacgc ccgatcagga aaccgcaatt gaagatgtga
     4081 agcacgacat ggaaacgccg acgccgatgg atcgtctgct gtgcggcgat gtgggttacg
     4141 gcaagactga ggtggcaatg cgcgccgcgt tcaaagccgt gatggacggc aagcaggcgg
     4201 cagtcctgac gccgacgact gtgcttgcgt atcagcactt cgatacattt cgccagcggt
     4261 tcgcgccgtt tccggtgaag atcgaactgc tctcgcgttt tcgatcttcg aaagaacaga
     4321 aagacgtcgt caagcgcgtc gagtcgggc
//
LOCUS       DASZZE010000480         1512 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_113680, whole genome shotgun sequence.
ACCESSION   DASZZE010000480 DASZZE010000000
VERSION     DASZZE010000480.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1512)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1512)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1512
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113680"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(338..1411)
                     /gene="tatC"
                     /locus_tag="VHD88_09295"
     CDS             complement(338..1411)
                     /gene="tatC"
                     /locus_tag="VHD88_09295"
                     /inference="COORDINATES: protein motif:HMM:NF013097.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HVS22029.1"
                     /translation="MPSLRRRKATGEKESREDLGGQMSFLDHLDELRKRLIRCMVFVL
                     LTAMGCWFLSDRIYNFLARPVQNALAEAQQRRVAASGLNGQQASVPLNSLHQNDKLRF
                     VFPETTRLGSVVIPAGASVTARVDKDNQDKLGLFTDEPLSAGNEVVPKDARLPVDFNA
                     APADKLPDLNDKLVVTTALEPFALYVKVSLYAALAVSVPFLLWQIWAFISPGLYPHER
                     KYVTPFIAFSSIGFIAGAATAYRLIFPPAARYLLGLGQDFRLLLKADDYFDFIILLML
                     GMGVVFQMPAITYVLSRIGLITAGWMLRVWRTAVIVILIAAAVLSPTNDVPNMLLFAA
                     PMFVLYAVSILVAWIFGRERRAI"
BASE COUNT          357 a          421 c          417 g          317 t
ORIGIN      
        1 tgtaggcctt cttaacttcg accttttcgt tgcgcggctt ttccgacgga tccttgccct
       61 gatcgttctt cttgtttttt tgcgccagcc ccgacggcat ggcaaaagta agagtcaata
      121 gagcgatggc cactcggctc aatctgcggt gaagcatagc gaattactcc ttcggaaagc
      181 ttcgggaaaa gttaaaggtt gcgcgcgtgt cgtccgatca ctcggacttg atcgattgtc
      241 gaattctaga tttgcttcga accagagtca agatgcggga aaaagggcgc aaagttgcct
      301 ttggcaggct tcattcccgc ggatgatgca ggcaaatcta aatcgcccga cgctcgcgtc
      361 caaagatcca cgcaaccaga atcgaaaccg cgtacagtac aaacatcggg gcggcgaaca
      421 gcaacatatt cggcacgtca ttcgtcggcg acaaaaccgc tgccgcgatc agaatcacga
      481 tgacggcggt gcgccaaacg cgcaacatcc agccggctgt aatcaaaccg atgcgcgaca
      541 agacatacgt aatcgccggc atttgaaaca cgactcccat gcccagcatc aacagaatga
      601 taaagtcgaa atagtcgtca gccttcagca gcagtcgaaa atcctgcccc agaccgagca
      661 ggtatctcgc cgccggtgga aagatcaatc tgtaagccgt cgccgctccg gcgataaaac
      721 caattgacga gaacgcgatg aacggagtga cgtatttgcg ctcgtgcgga taaagtccag
      781 gcgagatgaa cgcccaaatt tgccacagca aaaacggcac tgaaacagcc agcgccgcgt
      841 acagcgacac cttgacgtaa agcgcgaacg gttcgagtgc cgtcgtcacc accagtttgt
      901 cgttgaggtc gggtaacttg tcagccgggg cggcgttaaa gtcaacgggc aaacgcgcat
      961 ctttcggcac gacttcgttg ccggcggaaa gcggttcgtc ggtgaacagt ccgagcttgt
     1021 cttgattatc tttgtccacg cgcgcagtta ccgacgcgcc ggccggaatg acaacggatc
     1081 ccaacctggt ggtctcagga aaaacaaacc ttagtttgtc gttctgatgc agcgagttca
     1141 gcggaaccga ggcctgttgt ccgttaagtc cagacgcggc cacgcggcgt tgttgtgctt
     1201 cggccagcgc gttctgcacc gggcgcgcca gaaagttgta gatgcgatcg gagaggaacc
     1261 agcatcccat cgcggtcagc aaaacgaaaa ccatgcagcg aatcagtcgc ttgcgcagct
     1321 cgtcgaggtg atcgagaaac gacatctgcc cgccgaggtc ttcgcgcgat tctttttctc
     1381 ccgtggcttt acgtcgtctc aggctgggca tctgatatca atggcaggct cggattcgtt
     1441 tcagtgtcac agccagtcgt gcttgctggt tgccggctct gcggcgacag actcagtcga
     1501 ttgaggcttt gc
//
LOCUS       DASZZE010000481         1608 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_113681, whole genome shotgun sequence.
ACCESSION   DASZZE010000481 DASZZE010000000
VERSION     DASZZE010000481.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1608)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1608)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1608
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113681"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            133..438
                     /locus_tag="VHD88_09300"
     CDS             133..438
                     /locus_tag="VHD88_09300"
                     /inference="COORDINATES: protein motif:HMM:NF013844.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Smr/MutS family protein"
                     /protein_id="HVS22030.1"
                     /translation="MQDDIDDTNPFPEPVEIAITDVFDLHTIPPRDVKAVVEEYLREA
                     HRLGFPVVRIIHGKGIGVQREIVHSVLARTSFVEDWTDAPPDAGGLGATIARLSLPP"
     gene            484..720
                     /locus_tag="VHD88_09305"
     CDS             484..720
                     /locus_tag="VHD88_09305"
                     /inference="COORDINATES: protein motif:HMM:NF021253.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="addiction module protein"
                     /protein_id="HVS22031.1"
                     /translation="MQRNLKEVFHEGAQLPERDRATLAGLLIETLDPVSEPDVEAAWS
                     EEVKRRVAEIDAGTVELIPWEEVRTKLFGQSHES"
     gene            791..1069
                     /locus_tag="VHD88_09310"
     CDS             791..1069
                     /locus_tag="VHD88_09310"
                     /inference="COORDINATES: protein motif:HMM:NF014059.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin family protein"
                     /protein_id="HVS22032.1"
                     /translation="MTTNLKAIYEQGVLRLKEPLSLPDGAQVDVTVVSHEEGNGERSQ
                     GMDGRSWDTLTQLLADCKIDTGVADLAPQHDHYLYGIPKRLTDADSSS"
     gene            1291..1512
                     /locus_tag="VHD88_09315"
     CDS             1291..1512
                     /locus_tag="VHD88_09315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS22033.1"
                     /translation="MRGTIANTPIEADREREAERARADLLRRAEAQGIKPFASLEDFA
                     GDPALTADFDVDAFLRQVREDRDRPSGRL"
BASE COUNT          408 a          439 c          462 g          299 t
ORIGIN      
        1 atgtcctgct cagacgaatc gccaacgtaa cactccttcg cggaatggat tcagcaaggc
       61 ctgctaagtc tgcgggatca aactaacaaa agattgcacg aacaaataaa attatagggc
      121 gaagcatccg aaatgcaaga cgacatcgac gacactaatc ctttccccga acccgtcgag
      181 atcgcaatca cggacgtttt tgatctgcac acgatcccgc cgcgcgacgt gaaagcagtt
      241 gtcgaagagt atctgcgcga agcccaccgt ctcggctttc ctgtcgtgcg cataattcac
      301 ggcaaaggca tcggcgtcca gcgcgagatc gtgcacagcg tcctggcgcg cacttcattt
      361 gtcgaagatt ggaccgatgc gccgccggat gcgggagggt taggagcgac tattgcgcga
      421 ctatcgctgc cgccttaaga aaaaccaatt cacaggacgc ctggttcgga gtaaaatttc
      481 ttgatgcaac gaaatctcaa agaagtcttt catgagggag cgcaattgcc cgagcgcgat
      541 cgagctacct tagctggttt actgattgaa acgcttgatc cggtttccga gccggacgtg
      601 gaagcagcct ggtctgaaga ggtcaagcgg cgcgttgccg agatcgacgc cgggactgtc
      661 gaattgatcc cgtgggaaga agtacgcacg aagctattcg gccagtcgca tgagagttag
      721 attccagcgg catggccgcg tcagttaggt gcgagtgacg gtgctagaat caggatcgag
      781 gtaggttcca atgactacaa acctcaaagc aatctacgag cagggcgtgc ttcggctcaa
      841 agagcctctc tcgttgcctg acggcgcgca agtcgacgtt acggtggtgt cacacgaaga
      901 aggtaacggc gaacgatcgc agggaatgga cggtcgctcg tgggacaccc tcacgcaact
      961 cttagccgac tgcaaaatcg acaccggagt tgccgacctc gctccgcagc acgatcacta
     1021 cctatacggc attccaaaaa ggctaacaga tgccgacagt tctagttgac acggctgctt
     1081 ggatcgcgct cgtcaacacg aggggcgaac tacacagccc tgcgcggaac gattggctga
     1141 gatcaatccc gagactgttg aattgattcc ccggagaagc gcgccggagt tatgccgccg
     1201 gccgaatgag cgttagaatg tcaacgaagg cggaggcagt cgatgaagat gagacgcgcc
     1261 gataccgaaa cgacgatagg agaacgaatc atgagaggca ctattgcgaa cactccgatt
     1321 gaagccgatc gcgagcgcga ggcagaacga gcccgcgccg atttattgcg tcgcgccgaa
     1381 gcgcaaggca tcaagccatt cgcttcactg gaagatttcg caggggaccc ggctctgact
     1441 gcggacttcg atgttgatgc gtttctgcgc caagtccgcg aagaccgcga ccgcccatct
     1501 ggacgcctct aaacccaaaa gagaggtcag tgaaccatgg caacgctaga acagatcatc
     1561 gacgaagccc gcgcgctctc gcctgcggaa aagggcaagt tgcgtcgg
//
LOCUS       DASZZE010000482         2603 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_242903, whole genome shotgun sequence.
ACCESSION   DASZZE010000482 DASZZE010000000
VERSION     DASZZE010000482.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2603)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2603)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2603
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_242903"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1866
                     /locus_tag="VHD88_09320"
     CDS             <1..1866
                     /locus_tag="VHD88_09320"
                     /inference="COORDINATES: protein motif:HMM:NF013206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase family protein"
                     /protein_id="HVS22034.1"
                     /translation="QADTFRPVVRGRRGVVAGGQPLSVEAGMRVLQHGGNAVDAGVAT
                     ILAASVIEFSHFTFGGEVPILIKLRGSSPTIREGSLKNNDVVVIEGMGTAPAKATREF
                     FVNRAKQRGAAGTTATAPDSAATQRAATGDVDMPTIIGAKSGMIPSTGPLAATVPAVL
                     DACVTALDQFGTKSLSEVMQPAIELADGFPIDELRVQYIKTRAPIFSQWPDAKRIFLP
                     NGEVPKVGDVFVQADLARTLRAIAAAEKRNAGRGRHAALAAARDYFYKGPVGKRIGDY
                     MQTHGGLLSAEDLAGWHATVGAPVKGEYLGYEIYKPGFWTQGPLMIEVLNLLEGYDLK
                     RMGQNSPDYIHTLTEALKLGFADRDRFYGDPNFVKIPTQQLLSKDYAAVRRNLIDERR
                     ASLDQRPGDPANMKPLLASATTISYKAPPVPEIEKANDTTCVNVIDKEGNMFSATPSG
                     AWLPAVVAGDTGVLMGQRLQSALTDPNSPNVVAPGKRPRITLSPMLVLKDGQPFMILS
                     TPGADNQDQALLQVLLNVLEFGMNPQEAVEAPRFDTQHYVSSFDNHEFLPGVLNVESR
                     VPADVIKQLGSRGHKVTTQPPWGTGSSPTVIMYDAKTGVISGGADPRRGRYALAW"
     gene            1882..2187
                     /locus_tag="VHD88_09325"
     CDS             1882..2187
                     /locus_tag="VHD88_09325"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HVS22035.1"
                     /translation="MANAPTLFRVILQVSDLDKAAGFYSKLLNDEGRRIPRAARHYFD
                     CGPVILALVDVAAGGEAPKPIPDYIYFAVSDLESVYARANSDVFQPKMFTAKAPARL"
BASE COUNT          534 a          743 c          776 g          550 t
ORIGIN      
        1 caggccgaca cgtttcgtcc cgttgtgcgc ggacggcgcg gcgtggtcgc gggcggccag
       61 cctttatcgg tcgaagcagg catgcgcgtc ttgcagcatg gcggcaacgc ggttgatgcc
      121 ggcgtcgcca cgattctcgc ggcctcagtg atcgagttct cgcatttcac gtttggtggt
      181 gaagtcccga tcctgatcaa gcttcgtggc agtagcccga ccattaggga gggctctctt
      241 aagaataatg acgtcgtggt aatcgaaggc atgggcactg cgcccgccaa agccacgcgt
      301 gagtttttcg tcaaccgggc aaagcaacgc ggcgccgcgg gcacaaccgc gacagcgcct
      361 gattcagccg caacgcagcg cgcggcgact ggcgatgtcg atatgccgac catcatcggt
      421 gcgaagtccg gaatgatccc ttcaacgggc ccgttggccg ctacggttcc ggctgtgctc
      481 gatgcttgtg tcacggcgct ggatcagttc gggacgaagt cgctgagtga ggtgatgcag
      541 ccggcaatcg aactcgctga cggttttccg attgacgaac tgcgcgtgca gtacatcaag
      601 acgcgtgcgc cgatcttttc gcaatggcct gacgcgaaac gaatcttttt accgaatggc
      661 gaagtgccaa aggtcggcga cgtgtttgtg caagccgatc tcgcgcgcac gctgcgcgca
      721 atcgcggcgg ccgagaaacg aaacgcaggt cgcggccgtc atgcggcgtt ggcggcggcg
      781 cgtgattatt tctataaagg cccggtcgga aaacgcatcg gcgattacat gcaaacgcac
      841 ggcggcttgc tctccgcgga agatctcgcg ggctggcacg cgactgtggg cgcgccggtc
      901 aaaggcgaat atctcgggta tgaaatctac aaacccggct tctggacgca aggcccgctg
      961 atgatcgaag tgctgaactt gctcgaaggc tacgatctga aaaggatggg ccagaattcg
     1021 cctgactaca ttcacacgtt gaccgaagcg ctgaagcttg gctttgcgga tcgcgatcga
     1081 ttctatggcg atccgaattt cgtcaagatt ccaactcagc agttgctgtc aaaagactac
     1141 gctgcagtgc gtcgtaatct gattgacgaa agacgcgctt cactcgatca gcgccccggc
     1201 gatcccgcga acatgaagcc tttgcttgcg tcggccacga cgatttctta caaggctccg
     1261 ccggttccgg aaatcgaaaa agcgaacgac acaacatgcg tcaacgtgat cgacaaagag
     1321 ggcaacatgt tcagcgcgac gccgagcggc gcgtggttgc cggccgtcgt cgcgggcgac
     1381 accggtgtgt tgatgggcca acggctgcag tcggcgctaa ctgatccgaa cagcccgaac
     1441 gtcgtcgcgc caggcaagcg tccgcgcatc acgctttcac ccatgcttgt gctcaaagac
     1501 ggacagccat tcatgattct ctcgacaccc ggcgccgaca atcaggacca agcgttgctg
     1561 caagtgcttt tgaacgtcct tgaattcggc atgaatccgc aggaagccgt cgaagctccg
     1621 cgctttgaca cgcagcatta cgtcagttcg ttcgacaatc acgagtttct gcccggcgtg
     1681 ctcaacgtcg aatcgcgcgt gcccgcggat gtgatcaagc agctcggctc tcgcggtcac
     1741 aaagtgacga cgcagcctcc gtggggcacc ggctcttcgc cgacggtgat catgtacgac
     1801 gcgaagaccg gcgtgatttc cggcggcgcc gatccgcgaa gagggcgata cgcattggcg
     1861 tggtaaagga ggagatgacg aatggctaat gcgcccacac tcttccgcgt aattctgcaa
     1921 gtctccgatc tcgacaaagc cgctgggttc tattcgaagt tgcttaacga cgaaggtcga
     1981 agaattccga gagcggcgcg gcactacttc gattgcggcc ctgtgattct agcgctggtt
     2041 gatgtcgctg ccggaggcga agcaccaaaa ccaattccag attacatcta cttcgccgtc
     2101 agcgacctcg agagtgtcta tgcgcgcgcg aactcggatg tctttcaacc gaagatgttc
     2161 acggcgaaag cgccggcgag attgtgaacc gaccgtgggg cgaacgctcg ttctatgtag
     2221 atgatccgtg ggacaacgga ttgtgtttag tggacgagaa gaccttattt accggccgct
     2281 aaatctgcga agatgttatc cgccgatgtt atccgtgtga atccgcgtta atctgtggct
     2341 gttttctgga gttcacaatc tcatgaacaa gatcagaatc gtcgcggcag tgctgctcgc
     2401 gatccctctc cttgtattcg gcgggagctt ttacatccac ccgtttccgc tgccgcccac
     2461 taaggttcgg ctggtattga actgcttcat ttgatgcgcg atggcggctt gacttatgcg
     2521 atcacggcca gccacgtcgt ggcgggcgtg tttctgttag tgccgcgcac gctttttcta
     2581 gccgcaaggc tccatcctcg taa
//
LOCUS       DASZZE010000483         6878 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_309066, whole genome shotgun sequence.
ACCESSION   DASZZE010000483 DASZZE010000000
VERSION     DASZZE010000483.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6878)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6878)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6878
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_309066"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            115..456
                     /gene="rpsS"
                     /locus_tag="VHD88_09330"
     CDS             115..456
                     /gene="rpsS"
                     /locus_tag="VHD88_09330"
                     /inference="COORDINATES: protein motif:HMM:TIGR01050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HVS22036.1"
                     /translation="MPRSLKKGAWVDKGIRKVVERIRAGSQRPQVIRTWSRRSTITPE
                     MVGLTFGVHNGKRHIPIYITENMVGHKLGEFSPTRTFKGHSGTKSEKAEKVAKVSGPT
                     SGASAPAAPAA"
     gene            473..1069
                     /gene="rplV"
                     /locus_tag="VHD88_09335"
     CDS             473..1069
                     /gene="rplV"
                     /locus_tag="VHD88_09335"
                     /inference="COORDINATES: protein motif:HMM:NF012462.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HVS22037.1"
                     /translation="MEARASAKYLRGSPQKARLVIDMIRGKNVNQALAILRYSNKRAA
                     LGIEKCVKSAIANANETAEKANIAVDPDELWLKAAYVDRGPTKNRRRMRAAPQGRAYR
                     ERRHFCHVTILLSSDEPSAAAKTDAKSSAPAVSRKAKRGGAAAAPRAKRATKSEAPEA
                     AEEKTARASSKKEAKGEKKITKGVSKLGKALRRKKTEE"
     gene            1121..1861
                     /gene="rpsC"
                     /locus_tag="VHD88_09340"
     CDS             1121..1861
                     /gene="rpsC"
                     /locus_tag="VHD88_09340"
                     /inference="COORDINATES: protein motif:HMM:TIGR01009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HVS22038.1"
                     /translation="MGQKVHPYGFRLGYNKDWHSHWFAKKQYGDFLIEDLKLKAELKR
                     RFTGAGVSHVDVERAANRLKIIIYTSRPGIIIGRKGSEIDKLKGDIASRTGREVLVSI
                     QEIHKPELNAQLQAEKIAAQLEKRIAFRRAMRKAVEESLRFGAQGIKVKVSGRLNGAE
                     IARSEWHLQGQLPLHTLRSDVDYGLAEAHTTFGIIGVKVWIYRGQILDPNAAMARGTG
                     TDPINETRPSPREGRARPARARRERPER"
     gene            1874..2296
                     /gene="rplP"
                     /locus_tag="VHD88_09345"
     CDS             1874..2296
                     /gene="rplP"
                     /locus_tag="VHD88_09345"
                     /inference="COORDINATES: protein motif:HMM:NF012476.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HVS22039.1"
                     /translation="MPKKVKHRKQMRGRMKGVANRGSAISFGEYGLKSLEAAWITDRQ
                     IEAARIAMTRHIKRGGKIWIRMFPDKPVTKKPAETRMGKGKGAPEYWVAVVKPGRVLY
                     EIEGVDEKTAREAMRLASQKLPIRTKFVTRADQEGGAI"
     gene            2393..2602
                     /gene="rpmC"
                     /locus_tag="VHD88_09350"
     CDS             2393..2602
                     /gene="rpmC"
                     /locus_tag="VHD88_09350"
                     /inference="COORDINATES: protein motif:HMM:NF013027.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HVS22040.1"
                     /translation="MKRREEVDKYRDLADEDLHAETARLKESLFRLNFKLALGEVDAI
                     KKLRQEKKSLARIRTIARQREVKAG"
     gene            2658..3134
                     /gene="rpsQ"
                     /locus_tag="VHD88_09355"
     CDS             2658..3134
                     /gene="rpsQ"
                     /locus_tag="VHD88_09355"
                     /inference="COORDINATES: protein motif:HMM:TIGR03635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HVS22041.1"
                     /translation="MFRRKKKEEIVTPTPVAETTPKTVSSEEAASADVSSGATASEAA
                     VVETTPVVAEPASATVIAETALAVESAPRAGGRGNRVQKVGIVASDKMQKTVVVRVDR
                     LVMHMKYRRYVRRTSKFKAHDDLGSGVGDRVRIVETRPLSAQKRWRVVEILQKAAK"
     gene            3155..3523
                     /gene="rplN"
                     /locus_tag="VHD88_09360"
     CDS             3155..3523
                     /gene="rplN"
                     /locus_tag="VHD88_09360"
                     /inference="COORDINATES: protein motif:HMM:TIGR01067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HVS22042.1"
                     /translation="MIQMQTSLEVADNSGARRVEMIMGIGGSTGAIAGLGDRIKVTVK
                     EASPDGAIKKGTVQDAVIVRTRKEVRRKDGTYIRFDQNAAVLIKEDGTPIGTRVFGPV
                     ARELRDKNYMKIVSLAPEVI"
     gene            3526..3855
                     /gene="rplX"
                     /locus_tag="VHD88_09365"
     CDS             3526..3855
                     /gene="rplX"
                     /locus_tag="VHD88_09365"
                     /inference="COORDINATES: protein motif:HMM:TIGR01079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HVS22043.1"
                     /translation="MKGTKRARIRKNDQVVVIAGRDKGKRGRVLAVAPVTGKVKVEGS
                     GMIKRHQKPAGNRGGGIIDKEAWLDISNVLIVDPQSGKPTRVRYQIDGTGTKSRVAAA
                     SGHSLEK"
     gene            3929..4468
                     /gene="rplE"
                     /locus_tag="VHD88_09370"
     CDS             3929..4468
                     /gene="rplE"
                     /locus_tag="VHD88_09370"
                     /inference="COORDINATES: protein motif:HMM:NF000585.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HVS22044.1"
                     /translation="MARLKERYQKGIAPAIAKEFGIKNSMAIPRLDKIVVNMGMGEAI
                     ANAKVLDTAVEELRAIVGQKPVITKAKKSIASFKLRQGMPIGVMVTLRGERMYEFFDR
                     LVSIALPRVRDFRGVSPKAFDGRGNYTIGIREQLIFPEIDFNKVDKQRGMNISIVTTA
                     RNDDQARALLKGLGMPFRA"
     gene            4830..5222
                     /gene="rpsH"
                     /locus_tag="VHD88_09375"
     CDS             4830..5222
                     /gene="rpsH"
                     /locus_tag="VHD88_09375"
                     /inference="COORDINATES: protein motif:HMM:NF001109.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HVS22045.1"
                     /translation="MTDPIADMLARIRNAVSAKHSRVDIPASKLKLEIARILKEEGYI
                     NNFVVKGEGVKRVVRIFLRYDARGTSSITYLARVSRPGRRVYVGSGQIPRVLGGYGIN
                     IVSTSRGLMSGKVARRENVGGELLAEVY"
     gene            5324..5938
                     /gene="rplF"
                     /locus_tag="VHD88_09380"
     CDS             5324..5938
                     /gene="rplF"
                     /locus_tag="VHD88_09380"
                     /inference="COORDINATES: protein motif:HMM:TIGR03654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HVS22046.1"
                     /translation="MKQEQFSVPRSEFILEVCMSRIGRKPITIPKGVTVAIRDRELEV
                     KGAKGVLKTPVPEGITFKLEGDELVAARASDEQTALHGLARALANNAIQGVTQGYSKQ
                     MDVVGVGYKADVQGRKIVFSLGYSHPIEFPLPEGIEAKAERLTTKGSIQQYQTTLTVS
                     GIDKQKLGQVCAEMHKLRKPDAYKGKGVRYADVPIKLKPGKTGK"
     gene            6015..6494
                     /gene="rplR"
                     /locus_tag="VHD88_09385"
     CDS             6015..6494
                     /gene="rplR"
                     /locus_tag="VHD88_09385"
                     /inference="COORDINATES: protein motif:HMM:NF013057.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HVS22047.1"
                     /translation="MASRNRAEVREAIHRRIRRKVRGTTERPRLAVYRSMNHIYAQVI
                     DDEKAQTLVAASTTEKTLRGSSGGNVEAAKRVGQTIAERALAAGISSVVFDRGGYLYH
                     GRVRALTDAARAAGLNKDETIAAAEEVSAPEDSAKDASAEEKVAKPKRTKQAKAKEE"
     gene            6518..>6878
                     /gene="rpsE"
                     /locus_tag="VHD88_09390"
     CDS             6518..>6878
                     /gene="rpsE"
                     /locus_tag="VHD88_09390"
                     /inference="COORDINATES: protein motif:HMM:TIGR01021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HVS22048.1"
                     /translation="MAQGLDLKDQVISINRVTKVVKGGKNLSFAALVVVGDEAGHVGF
                     GTGKAREVPLAIKKGIEAAKKNLIRVPLIENTLPHQLIGRFGAGRVLMKPASQGTGVI
                     AGGAVRAVMRAAGVRDVR"
BASE COUNT         1751 a         1666 c         2186 g         1275 t
ORIGIN      
        1 gttagagatc ggagagtcaa gtaaacgatg aacgatgaac tatgaatgat gaagtagtta
       61 gttcatcgtt catcattccg cgttcatcgt tcggttgagc gaagcgaaac acttatgcca
      121 cgttcattaa aaaaaggcgc ctgggtcgat aaaggcattc ggaaagttgt cgagcgcatt
      181 cgcgcgggat cgcagcggcc gcaggtcata cgcacgtggt cgcgacgctc gacgattacg
      241 cccgagatgg tcggattgac gtttggggtg cacaacggca aacgccatat cccgatctac
      301 atcacggaaa atatggtcgg ccacaagttg ggcgagtttt caccgacgcg gactttcaag
      361 ggccattcgg gaacgaagtc ggaaaaggcc gagaaggtag cgaaggtgtc aggaccaacg
      421 tcaggcgctt cggcgccggc ggcgcccgcg gcgtaagaac ggttattagt ttatggaagc
      481 cagagcgagt gcaaaatatc tgcgtggttc gccgcaaaag gcgcggctgg tcatcgatat
      541 gatccgcggc aagaacgtca accaggcttt ggcgattctc cgctattcga ataagcgcgc
      601 cgcgctggga atcgaaaagt gcgtcaagtc ggcgatcgcc aatgcgaacg agacggcaga
      661 gaaagcaaac atcgccgtcg atccggacga gctttggctg aaagcggcgt atgttgatcg
      721 gggtccgacg aagaatcgcc ggcgcatgcg cgcggcgccg cagggccgag cttatcgcga
      781 gcggcgtcat ttttgtcacg tgacaatctt gctttcgagc gatgagccga gcgcggcggc
      841 gaagacggac gctaaatcat cagcgccggc agtgagccga aaagcgaaac gcggcggagc
      901 agcagcagcg ccacgcgcta aacgcgctac gaagagtgaa gcgcccgaag ctgcggaaga
      961 aaagactgcg cgcgcttcgt ctaagaaaga agcgaagggc gagaagaaga tcactaaagg
     1021 cgtgtcgaag ttaggcaaag cgttgcgacg gaagaagact gaggagtaat caatttcaga
     1081 tttcagatct caaatttgaa atctgaaaac ggagtaaata gtgggccaaa aagttcatcc
     1141 atacggtttt cgtctcggct acaacaaaga ctggcattcg cactggtttg cgaagaagca
     1201 gtacggcgac tttttgatcg aagatctcaa gctcaaagct gagctgaaac ggcgtttcac
     1261 cggcgcaggc gtttcgcacg tggacgtcga acgcgcggcg aaccgtctga agatcatcat
     1321 ctacacttcg cggccgggaa tcatcatcgg gcgaaaggga tctgagatcg ataagttgaa
     1381 gggcgacatc gcttcgcgca ccggccgcga agttctggtt tcgattcagg aaattcacaa
     1441 gccagaactg aacgcgcagt tgcaggccga aaagatcgca gcgcaactcg aaaagcgcat
     1501 cgcatttcgt cgcgcgatgc gcaaagccgt ggaagaatcg ctgcgctttg gcgcgcaggg
     1561 aatcaaggtc aaagtgagcg gccggcttaa tggcgccgaa atcgcccgca gtgagtggca
     1621 cttgcaagga cagttgcctt tgcacacgct gcgatcggac gtcgattacg gtctggcgga
     1681 agctcatacg acgttcggaa taatcggcgt gaaggtttgg atttatcgag gccaaattct
     1741 ggatccgaac gcggcgatgg cccgcggcac cggcacagat ccgattaacg aaacgcgacc
     1801 gagcccacgt gaaggccggg cccgaccggc gcgtgcgcgc agagagaggc cagagagata
     1861 gcccgccatg ttgatgccga aaaaagttaa gcatcgcaag cagatgcgcg gccgtatgaa
     1921 gggcgttgcc aatcgcggca gcgcgatcag tttcggcgag tatggattga agagtcttga
     1981 ggcggcgtgg atcactgata ggcagatcga ggccgcgcgc atcgcgatga cgcgtcacat
     2041 aaaacgcggc ggcaagattt ggattcggat gtttccggac aagccggtca cgaagaagcc
     2101 ggcggaaacg cgcatgggca aaggcaaagg cgcgcctgaa tactgggtgg ccgtagtcaa
     2161 gcccggtcgt gtgctctacg agattgaagg agtcgatgaa aaaacggcgc gcgaagcgat
     2221 gaggcttgcg tcgcaaaagc tgccgatcag aacaaagttc gtgacccgcg ccgatcaaga
     2281 ggggggcgcg atctgagttt caagttttga gttcggagtt ttgtgttaag aaaaagaatc
     2341 gactcaaaac tgaaaactga aaactcaaaa ctaagaactg cggcactgag ctatgaagag
     2401 acgtgaagaa gttgataagt atcgtgacct agccgacgaa gatctgcacg ccgagacggc
     2461 gcgtttgaaa gaatcgctgt ttcgtctgaa tttcaaattg gcgctgggcg aagtggacgc
     2521 gatcaaaaag ctgcggcagg agaagaagtc gctcgcgcgc attcgcacga ttgcgcgcca
     2581 gcgcgaggtg aaagccggat gaggcggcgc cgatgatttc caaatctggt tagtagtgag
     2641 ctgcgaataa ggaacagatg tttagaagaa aaaagaagga agaaatagtc acgccgacgc
     2701 cagtcgccga gacgacccct aagactgtaa gttccgaaga ggccgccagc gcggacgttt
     2761 cttcgggagc gactgcttcg gaagcagccg tggtcgagac gactcctgtg gttgctgaac
     2821 cagcgtcagc gactgtgatt gccgagacag ctctcgccgt tgagtctgcg cccagggcgg
     2881 gcgggcgcgg caatcgggtg cagaaggtgg gcatagtggc gtctgacaaa atgcagaaga
     2941 ccgtcgtggt gcgagtcgat cgcctggtga tgcacatgaa ataccggcgt tacgttcggc
     3001 gcacttcgaa gttcaaagcg cacgacgact tgggctcggg tgtcggcgac cgcgtgcgca
     3061 ttgtcgagac gcgaccgctg tcggcgcaga agcgctggcg cgtggtggag attttgcaga
     3121 aggcggcgaa gtagcgcgaa cagagtgagc agtcatgatt caaatgcaga cctctctgga
     3181 ggtcgctgac aattcgggcg cgcggcgagt cgagatgatt atgggcatcg ggggctcgac
     3241 gggcgcgatt gcgggcctcg gtgatcgaat caaggttacc gtgaaagagg cttcgcccga
     3301 tggcgcgatc aagaaaggga cagtgcagga cgccgtgatc gtgcgcaccc gcaaggaagt
     3361 gcgccgcaaa gatggaacct atatccggtt cgatcagaac gcagcggtgc tgatcaaaga
     3421 agacggcacg ccgattggca cgcgcgtctt cggacccgtc gcgcgtgaat tgcgtgacaa
     3481 gaactacatg aagattgttt cgctggcgcc ggaggttatt tgatcgtgaa gggaacgaag
     3541 cgagcaagaa tcagaaagaa cgatcaggtg gtcgtgattg ccgggcgcga caaaggaaag
     3601 cgcgggcgcg tgttagcagt cgcgccggtc accggcaaag tgaaggtcga aggatccggc
     3661 atgatcaagc ggcatcaaaa gccagctggc aatcgcggcg gcggcatcat cgacaaagaa
     3721 gcctggctgg atatttctaa cgtattgatc gtcgacccgc aatcaggcaa gccgacgcgc
     3781 gtgcgctatc agatcgatgg caccggcacg aagtcgcgcg tggccgcggc gagcgggcat
     3841 tcgttagaga agtaaacagt gaatagtaaa tcgtaaacgc ttttcacttc gattcactat
     3901 ttacgattca cgatttacag ataagaaaat ggcaagactg aaagagcgtt atcaaaaagg
     3961 catcgcgccg gcgatcgcca aagagttcgg aatcaagaac tcgatggcta taccgcggct
     4021 ggataagatc gtcgtaaata tgggaatggg cgaagcgatt gcgaacgcta aagtcctcga
     4081 caccgcggtc gaggagttga gagccatcgt cggacaaaag ccggtgatca ctaaggccaa
     4141 gaaatcgatc gccagtttca aactgcggca gggaatgccc atcggggtca tggtgacgct
     4201 gcgcggcgag cgcatgtatg aattcttcga ccgtttagtg tcgatcgcgc tgccacgggt
     4261 aagagatttt cgcggcgtct cgccgaaggc gtttgatgga cgcggcaatt acacaatcgg
     4321 aattcgcgag caattgatct tccctgaaat cgatttcaac aaggtcgata agcagcgcgg
     4381 gatgaacatc tcaattgtga cgacggcgcg caacgacgat caagcgcgcg cactcttgaa
     4441 gggactggga atgccgttta gggcgtgaga agaacagtga cgagtgaccg gtgacaagtg
     4501 acaagcagat gacttatctc gtcactcgtc acgtatcact tgtcaccgag gctatatggc
     4561 aaagaaatca ttaatcgcga aggcgaatcg caagccgaag ttttcatccc gggggtacac
     4621 gcgctgcaag agatgcggcc ggccgcgagg ctatctgcgc aagtttcact tgtgccgcat
     4681 ctgttttcgc gagctggcgt tacagggaca gattcccggc gtcgtgaaat cgagctggtg
     4741 agaaaggcgg tgacaagtgt aagtgacaag tgatgagatt gagtctggtc tcgacctgtc
     4801 acctatcacc tgttacggag tttttaataa tgactgatcc tattgccgac atgttggcgc
     4861 gaatccgcaa cgcggtctca gccaaacact cgcgcgtcga tattccggcg tcgaagctga
     4921 agctggagat cgcgcgcatc ctcaaagagg aaggctatat caataacttc gtcgtcaagg
     4981 gtgaaggcgt gaagcgcgtg gtgcgcatct ttctgcgcta cgatgcccgc ggcacttctt
     5041 cgattactta tttagcgcga gtgtcgcgtc caggacgacg tgtgtatgtc ggctcaggtc
     5101 agattccgcg cgtgctgggt ggttatggca tcaacatcgt ttcgacttcg cgcggactga
     5161 tgagcggcaa ggtggcgcgg cgtgagaacg tcggcgggga actgctggcg gaagtttact
     5221 gacaacgctg aagtaggaac gatgaacgat gaaacaagag tagttcagcg ttccgcgttc
     5281 atacttgagg tttgtagcga cgctgaagta ggaacgatga acgatgaaac aagagcagtt
     5341 cagcgttccg cgttctgagt tcatacttga ggtttgcatg tctcgcattg gtagaaaacc
     5401 gataacgatt ccgaagggcg ttacggtcgc gatccgcgat cgcgagctgg aagtgaaagg
     5461 cgccaaaggc gtgctcaaga ctccagttcc ggaaggcatt actttcaaac tggaaggtga
     5521 cgaactggtg gccgcgcgcg cttcggatga gcaaaccgcg ctgcacggcc tggctcgggc
     5581 gctggcgaac aacgcgattc agggcgtgac gcagggctat tcaaagcaga tggacgtggt
     5641 cggcgttggc tataaggcag acgtgcaggg tcgcaagatt gttttctcgc tcggctattc
     5701 ccatccgatc gagtttcctt tgccagaagg catcgaagca aaagccgagc gtctgacgac
     5761 aaaaggaagt attcagcaat atcaaacgac gctgactgtt tcggggatag acaaacaaaa
     5821 actgggacag gtctgcgcgg agatgcacaa actgcgtaag cccgacgcct acaaaggcaa
     5881 gggcgtgcgt tacgcggatg tgccgattaa gttgaagccg gggaaaactg ggaagtaacg
     5941 atgaagtgag aacgctgaac gatgaagttg gcggccgttc atagttcata attccgaatt
     6001 catagttgat agagatggct agcagaaaca gagcagaggt tcgggaagcg attcacagac
     6061 gcatccgccg caaggttcgc ggcaccactg agcgtccgcg gctggcggtc tatcgcagca
     6121 tgaaccacat ctatgcgcag gtgatcgacg acgaaaaagc gcaaacgctg gtggccgcgt
     6181 caacaactga gaagacgctg cgcggatcga gcggcggcaa cgtggaagca gcgaagcgcg
     6241 taggacagac gatcgccgaa cgcgcattgg ccgccggaat tagcagcgtc gtgttcgatc
     6301 gtggcggcta tctttatcac ggacgcgtca gagcgttgac cgacgcggcg cgcgccgccg
     6361 ggcttaacaa agatgagacc attgcggcgg ccgaagaagt gagtgctcca gaagatagcg
     6421 cgaaggacgc gagcgccgaa gaaaaagttg cgaaaccaaa gcgcaccaaa caggcgaaag
     6481 ctaaagaaga ataatgagac aaccgaggca gagaatattg gcgcaaggac tcgatctgaa
     6541 agatcaggtc atttcgatca atcgcgtgac caaagtcgtg aagggcggca agaacctttc
     6601 gttcgcggcg ctcgttgtcg tcggcgatga agccggacac gtaggctttg gcaccggcaa
     6661 ggcgcgcgaa gtacccctgg cgatcaagaa aggcatcgag gcggcgaaga agaacctgat
     6721 tcgcgtgccg ctaatcgaaa acactttgcc gcatcagttg attggccggt ttggcgccgg
     6781 ccgcgtcctg atgaagccgg cttcgcaggg aacgggtgtg atcgcgggcg gcgccgtgcg
     6841 cgctgtgatg cgggccgcgg gagtgcgtga tgtacgca
//
LOCUS       DASZZE010000484         2398 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_309118, whole genome shotgun sequence.
ACCESSION   DASZZE010000484 DASZZE010000000
VERSION     DASZZE010000484.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2398)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2398)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2398
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_309118"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..825)
                     /locus_tag="VHD88_09395"
     CDS             complement(<1..825)
                     /locus_tag="VHD88_09395"
                     /inference="COORDINATES: protein motif:HMM:NF013632.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HVS22049.1"
                     /translation="MTAFAESVFAAPLPIACALMAVLGAMIGSFLNVVIHRLPREQSI
                     VFPNSTCPKCRAQIKPYDNIPILSYLILRGRCRACGAPISARYPAVEALTALLFAAVT
                     WHDSLSFALVFDLAFAASIVALVFIDAEHMILPNAITYPGILFALITRVAVPYLAGAS
                     HFDDLPRLLTNFPAGYPIWIVSLAGAGLGALAGGGSLWLMGFIWEKLRGVEAMGFGDV
                     KMMLMVGAFLGWRLTILTILIAVFTGSLVGIALMLRWGGRNLQMMLPFGIFLGIGSI"
     gene            complement(1009..>2398)
                     /locus_tag="VHD88_09400"
     CDS             complement(1009..>2398)
                     /locus_tag="VHD88_09400"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HVS22050.1"
                     /translation="TTFNLSPSITKSFEKGGGIYTFSFANSHVNTSNSFSLINPYYSS
                     NLSLTITQPLMRNRSIDTSRRLIRVQKKHLEQTDSDFRARTIAIISQVQAAYWNLVFA
                     LRNQQNQLDSLNLSRQNMRNIEAQIAAGAKAPLDRAQVQTDIATREANLFVAVQSVST
                     AENSLKQLMLRDPQSPEWSAQFTPTDTPALDLSPVDLNAALDEAHKNRPELRRLNLQK
                     EINAVDVQYYKNQTLPQMDLVSTVATTGLAGTSVGLPAGTLVPLISGSFSSSSSAFLL
                     QQIRNVQTSQGLPLAVVPNVATSGAPPYLIGGYGKDISNLFGLGTRNINVGVTISFPF
                     HNKTAEANLAGARIQTEQLEASYRSQDQAVEMDVRNAAQAVDTAQKRVVASRLARESA
                     EQQLAGEQKLYEVGRSTTFLLLQRQNELTAARTTELQSQTDYNKALADLQRATAATLR
                     VNSVVVENPTKP"
BASE COUNT          531 a          679 c          691 g          497 t
ORIGIN      
        1 aatcgatccg atgcccagaa aaatcccaaa cggcagcatc atctgcaggt tccgtccgcc
       61 ccacctgagc atcaacgcta tgccgaccag cgagcctgta aaaaccgcga tcaggatcgt
      121 cagaatcgtc agtcgccatc cgagaaaagc tccgaccatc agcatcattt ttacgtcgcc
      181 gaagcccatc gcttcaacgc cgcgcagttt ctcccagatg aaacccatca accagagcga
      241 accgccaccg gccaacgcgc ccagacccgc tccagcgagc gacacaatcc aaatcggata
      301 gccggctgga aaattcgtca acaggcgtgg caagtcatcg aagtgtgatg caccggcgag
      361 atacggaacg gccacccgcg tgattagcgc gaacaggatt cccggataag tgatcgcgtt
      421 cgggaggatc atatgctcgg cgtcgatgaa aaccagcgcg acgatcgacg ctgcgaacgc
      481 caaatcaaaa accagagcga acgagagtga gtcgtgccag gttacggctg cgaacaacaa
      541 cgccgtcagc gcttcgactg ccggatagcg cgcagagatc ggcgcaccac acgcgcgaca
      601 tcggccgcgc agaatcaagt aactgagaat tggaatgtta tcgtaaggct tgatctgggc
      661 gcggcacttc ggacaagtcg agttgggaaa gacgatcgat tgctcgcgcg gcagacgatg
      721 aatgacgacg ttgagaaagc tgccgatcat cgctccgagc accgccatca acgcgcaggc
      781 gatcggcagt ggcgcggcga agacgctttc agcgaacgca gtcattccac tcgcattgta
      841 gcgcgcccgc taaaggctgc ctagaatcat ttccgatttt caatcgccga ttgtcaatta
      901 gcagaatttc caattttcgg agcttgtgaa atctgagccc tcccttacgg tcgggctacg
      961 gccccgcgtc tcgacttcga atttggcaat cgtcaatcgg caacgcaatc atggcttcgt
     1021 aggattttcg acgaccacgc tgttgacccg cagcgttgcg gctgtcgcgc gctgcaagtc
     1081 agccagcgcc ttgttgtagt cggtctgcga ctggagttcg gtcgtgcgcg ccgcggtcaa
     1141 ctcgttctga cgttggagca acaggaacgt cgtcgagcgg ccaacttcgt aaagtttctg
     1201 ctcgcccgcg agttgctgtt cggcactctc tcgcgccagc cgcgacgcga cgactcgctt
     1261 ttgcgccgta tcgacggcct gcgcggcatt gcgaacatcc atctcgacgg cctgatcctg
     1321 cgagcgatat gaagcttcaa gctgttcggt ctgaatgcgc gcgccggcga ggttggcctc
     1381 agcagtcttg ttgtgaaatg gaaaggaaat cgtgacgccg acgttgatgt tgcgcgtacc
     1441 taggccgaac aagttgctga tatcctttcc gtatccaccg atcaagtacg gaggcgcgcc
     1501 ggatgtcgcg acgttcggga caactgcgag aggcaaaccc tggctcgtct ggacgttcct
     1561 gatttgctgc aacaggaaag cgctcgaact tgagctgaaa cttccggaga tcagcggcac
     1621 cagagtaccc gccggcaagc cgactgatgt tcccgccaaa ccagttgtag ccacggtgga
     1681 aacgaggtcc atctgcggca gcgtctggtt tttgtaatac tgaacatcga ccgcgttgat
     1741 ttccttttgc aagttaagcc ggcgcagctc cgggcgattc ttgtgagctt cgtcgagcgc
     1801 cgcgttcaga tcgacgggcg acaagtcgag tgccggcgtg tcagtcggag taaactgcgc
     1861 cgaccattca ggggactgcg gatcgcggag catgagttgc ttcaggctgt tctcggcagt
     1921 cgaaacgctt tgcactgcca cgaaaaggtt agcttcgcgc gtggcaatat cggtttgcac
     1981 ctgagcacga tcaagcggcg ccttcgcgcc cgccgcgatc tgcgcctcga tgttacgcat
     2041 gttctgacgc gacaggttca ggctgtcgag ctggttctgc tggttgcgca gcgcgaaaac
     2101 gagattccag taggcagctt ggacttgcga gatgatcgcg atcgtgcgcg cgcgaaagtc
     2161 tgagtcggtt tgctcgaggt gctttttctg cactcgaatc aagcgacggc tggtgtcaat
     2221 cgagcggttg cgcattagcg gttgcgtgat cgtcagcgaa aggttcgatg agtaatacgg
     2281 attaattagg ctgaaactgt tgctggtatt tacgtggcta ttggcgaacg aaaacgtata
     2341 gatgccgcca cctttctcaa acgatttagt aatcgacgga ctcaggttaa acgtcgtc
//
LOCUS       DASZZE010000485         6097 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_227904, whole genome shotgun sequence.
ACCESSION   DASZZE010000485 DASZZE010000000
VERSION     DASZZE010000485.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6097
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_227904"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..360
                     /locus_tag="VHD88_09405"
     CDS             <1..360
                     /locus_tag="VHD88_09405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS22051.1"
                     /translation="EQALFSSGDRRVARVIEAAARLNGDLNAALRETRIDPAFHTSRR
                     RLYDEILPWDIVDSGISREFMQREDERAHEARSTAPCPSVNECTRCGVCPTTWLAEAP
                     AALVQLQGVAIASQPAM"
     gene            complement(415..807)
                     /locus_tag="VHD88_09410"
     CDS             complement(415..807)
                     /locus_tag="VHD88_09410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS22052.1"
                     /translation="MNQDNMPIKSNERGGARLKFIIAVVVFAVVVYVGYLYVPVAIDA
                     YYFKDVMQNKVDLAATQGFETAWVKDQLTKSEPEYHVPSDAIITPTQKDNRIEVRVQF
                     TRPISFPGFTYNYEFDYSAQSTAFLTIK"
     gene            complement(917..2104)
                     /gene="aroB"
                     /locus_tag="VHD88_09415"
     CDS             complement(917..2104)
                     /gene="aroB"
                     /locus_tag="VHD88_09415"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003856 - 3-dehydroquinate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HVS22053.1"
                     /translation="MTRVQVRLPARSQNYEIKIGAGLLSTLGREARLCLGSAARRVAV
                     ISNELVFDLYGERAVRSLRAAGFTVGHWLMKDGERNKSLRSLEAALAFLRASGLERSD
                     AVIALGGGVVGDLAGFAAAIYLRGIAFIQVPTTLLAQIDASVGGKTAVNTFAGKNLIG
                     AFHQPRLVLIDTETLRTLPRRELTAGWCEAVKQGAAGSHKLFKQTVGFLRSCGTDFSL
                     CASKKESQTEVCATIAAQCRFKASIVARDERENINRTDHRSRRILNFGHTTAHALESI
                     TGFSRFRHGEAVGHGMLVAAQISKSLGILAPGELESLREAIRLCGPLPRADDLAIDKI
                     AQAMKSDKKSVGGSMKWVLLERIGRARIVDGSEISPRLLRSALRAGLGSLSSRVPPLA
                     GEG"
     gene            2371..3366
                     /locus_tag="VHD88_09420"
     CDS             2371..3366
                     /locus_tag="VHD88_09420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS22054.1"
                     /translation="MMPRKSLWFGLTLAMAIVALVFVSADARPKKKKHTERVYGPPSL
                     SLAAEPTMIRTCESGQVRLVANATSPESRPLRYKWTTNGGRLNGQGANTSWDLAGVQA
                     GVYQAVVEVDDGRDLDCVAFSSISVVVTDCPAPPPPPIVCPNVTVSCPDLAAENAPAT
                     FTATISGGSANITPSYNWTISAGRIISGQGTPSITVDTTGLGGQSVRANLEVGGYGMR
                     CPASCATSIPIVSKPRKFDEYYDIARNDEKARLDNYAIQLRGEPGSQGYIIVYPSRRG
                     RAGEAQARAKRISDYLVNSRGIDSSRFTITMGTAREDWLVELWIVPSGATPPTPR"
     gene            complement(3636..4313)
                     /locus_tag="VHD88_09425"
     CDS             complement(3636..4313)
                     /locus_tag="VHD88_09425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS22055.1"
                     /translation="MEKLFALILLTLLAATVSAQSETAQSSAAKSIQPAQTPAAIDGT
                     AKTDSAPGLIISVQPTPPREIKIAAGTPLDIEAVYTVSSLDLKPGDLLSFRVLVPVMV
                     DGVTLIDKNSLVTGRVVEAKRGRHWGKAGRLTWTIQDVVAADGTRVPLQAQKDLPTGR
                     NGIKGTSHGGEVAAKTIVFSALLFPFSPLALMSGFKRGEDAVLPQGKRFVVFVQKETA
                     LKVQPER"
     gene            complement(4555..5076)
                     /locus_tag="VHD88_09430"
     CDS             complement(4555..5076)
                     /locus_tag="VHD88_09430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS22056.1"
                     /translation="MARISLLILFLVGGVCAQQQGAVTPTNPNPVSQQTLADPFEARL
                     IPRNSRVYIAQFKSEDSEHPVEGFETYMAAALRKKKVPLVVVNDRTLADFEIVGSADK
                     KGAGFAKKWILGDFRRSTSASFTMTNIHTGVVAYADASDRASANKGLRSSAEKLAKYL
                     KRKIEDDEKKRKH"
     gene            complement(5135..>6097)
                     /locus_tag="VHD88_09435"
     CDS             complement(5135..>6097)
                     /locus_tag="VHD88_09435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS22057.1"
                     /translation="DGIGAIVEFAAQNIDKVQTIAFQPVSFTGRDEDVADAVRIKQRY
                     TLAGMTHDLKDQLGGRLQPLRDWYPLSSYSAFTSVMDMLQGADAPWGWSSCNCHPNCG
                     IFTLIVVNKKTCAFTSLFDFFDYEQFMKDVAVITDTARGKKLSYAQLGMAIMRNFHAE
                     RAPEGFPISQIINLFKPSSTNSSSDRNDRMKAKVADDRSDNWRVLCVEGMWFQDLFNY
                     DFRRTEMCVIPYGTQEGEISFCAYNTGVGWRQIIENMHKTANLAEWYQENERHAVYAA
                     GHNVPGITKKHSLSLPIVNAILAEESGLTSPFLVEETEEETVSV"
BASE COUNT         1311 a         1726 c         1673 g         1387 t
ORIGIN      
        1 gaacaggcgc tgttctcttc cggcgatcgc cgcgtcgctc gcgtcattga agccgccgca
       61 cgtttgaatg gcgatctgaa cgccgcgctg cgcgagacgc gaatcgatcc ggcgtttcac
      121 accagtcgcc gtcgtcttta cgacgaaatt cttccgtggg acatcgtgga ttccggcatc
      181 tcgcgcgagt tcatgcagcg cgaggacgaa cgcgcgcacg aagcacgctc tactgctccc
      241 tgtccttccg tcaatgaatg cacgcgctgc ggagtttgtc ccacgacgtg gctcgctgaa
      301 gccccggccg cgctcgtgca actgcaaggt gtcgctatcg cgagtcagcc tgccatgtaa
      361 tgagcgcgct cccccgcgcg ctgggcggac aaggatgtcc gcgctccgag ctagctattt
      421 gatcgtcagg aatgcggtgc tctgcgcgct gtagtcgaac tcgtaattgt aagtgaagcc
      481 gggaaatgaa atcgggcgag tgaactgcac ccgcacctcg atccgattgt ctttctgcgt
      541 cggcgtgatg atcgcgtccg agggaacgtg atattcgggt tcgctcttcg tgagttgatc
      601 cttgacccac gccgtttcga aaccctgcgt ggccgcaaga tcgactttgt tttgcatcac
      661 gtccttgaaa tagtaagcgt ctatcgcgac gggaacgtaa aggtagccca cgtaaacgac
      721 gaccgcgaaa accacgactg cgatgatgaa cttcaggcgc gctccgccgc gttcgttact
      781 cttgattggc atgttgtctt gattcatggt ttgcctatca ttaagtgtcg gtctgtaaag
      841 gcgaccgaac cttagcgcgc ccctctctgg tacggagagg ggttggggtg aggtaatacg
      901 ccttaagacc cccaccctaa ccctcccccg cgaggggagg gaccctggaa ctaagcgatc
      961 ctaagcctgc gcgtaacgct gaccgcaaaa ggcgcgggct aatctcgctt ccgtcgacga
     1021 tgcgggcgcg cccgatgcgc tccaacaaga cccacttcat agaaccgccg acggatttct
     1081 tatcgctctt catcgcttgg gcaattttat caatcgcaag atcgtcagcg cgcggtagcg
     1141 gcccgcaaag cctgatcgct tcgcgtaacg attctaactc gccgggagcg agtatgccta
     1201 gacttttcga tatttgggcc gcgaccagca tgccgtgacc gacagcttcg ccgtgacgaa
     1261 aacggctaaa gccggtgatg ctttcgagcg catgcgcggt ggtgtgaccg aagttcagaa
     1321 tgcgtcgcga acggtgatcc gtgcggttaa tgttctcgcg ttcgtcgcgc gccacaatcg
     1381 aagctttaaa gcgacactgc gcggcgatcg tggcacagac ttcagtctgt gattccttct
     1441 tgctagcaca cagactgaag tctgtgccac aactgcgaag aaaaccgacg gtctgtttga
     1501 atagcttgtg actgccggcc gcgccttgct tgacggcttc gcaccagccg gcagtgagtt
     1561 cgcgtcgagg caaagtgcgc agcgtttcag tgtcgatcaa aacgagacgc ggttgatgaa
     1621 aggcgccgat caggttcttg cccgcgaacg tgttcaccgc cgtctttccg ccgactgatg
     1681 catcgatctg cgcgagtaat gtcgtcggca cttgaatgaa tgcgatgccg cgcagataaa
     1741 tggccgcggc aaaaccagcg agatcgccga ccacgccacc gccgagtgca atcacggcat
     1801 cgcttctttc cagaccggac gccctcaaga acgcgagggc cgcttccaac gagcgcagag
     1861 acttatttcg ctcgccatct ttcatcaacc aatgaccgac cgtgaatcct gctgcgcgta
     1921 aactccgcac cgcgcgctcc ccgtagagat cgaaaacaag ctcgtttgaa atgaccgcca
     1981 cgcgacgcgc ggctgatcca agacacaaac gtgcttcgcg tcccagcgtt gataacaaac
     2041 ccgcgccgat ctttatttcg tagttttgcg agcgcgccgg caagcgcact tgaacacgcg
     2101 tcatgaatta gaatgtatta cagaaccgct cgcggtagcg agcgggtaat ccaaaccatc
     2161 tagcgatcag cgaatggtta tgatagagcg ccgcttacgc gctcgctacc gcgagcggtt
     2221 ctgtacctac cagtagaaac ccaccgccat tcgctgtttt atttgcttgt tgtctctgga
     2281 tttcacagtg ccggaaggct agacttcctg aaaacgcgca aggcttgacc cgcttgcccc
     2341 cgggccaggc ctgattagaa agggtaaatg atgatgcctc gaaagagtct ctggtttggc
     2401 ctcacgctgg cgatggccat agtcgctttg gtttttgttt cagcggacgc gcgtcctaaa
     2461 aagaaaaagc acactgagcg ggtctatgga ccgccgtcgc tttctttagc ggctgagccc
     2521 acgatgattc gcacttgcga atcggggcaa gtacgacttg tcgccaacgc cacttcgccc
     2581 gaaagccggc cgctgcgtta caagtggacc acgaacggcg gcaggcttaa cggtcaggga
     2641 gcaaacacga gttgggatct tgcaggagtg caagcgggcg tctatcaggc agtagtggaa
     2701 gttgacgatg gccgcgacct cgactgcgtc gcgttttcat ccatctcggt ggtggtcacg
     2761 gattgtccgg cgccgcctcc tccgccaata gtttgtccga acgtaaccgt ttcctgtccc
     2821 gacttggctg ccgaaaacgc accggcgaca ttcacggcga cgatcagcgg cggctcggct
     2881 aacataactc cgagttacaa ctggacaatt tccgcgggtc gcatcatcag cggtcaggga
     2941 acgccgagca tcaccgttga cacaaccggt ttgggtggac agagcgtgcg cgcgaatctc
     3001 gaagtcggcg gatacggaat gcgttgtccg gcaagttgcg cgacttcgat tccgatcgtt
     3061 agcaagccgc gcaagtttga cgagtactac gatatcgcgc gcaacgatga gaaagcgcgg
     3121 ctcgataact atgcaattca gttgcggggc gagccgggat cgcaaggcta catcatcgtc
     3181 tatccatcac gacgtggccg tgccggcgaa gcgcaagccc gcgcgaagcg gatttcggat
     3241 tatctggtca attcgcgcgg catcgactcg agccgattta cgattacgat gggaacggca
     3301 cgagaggatt ggctggtcga actgtggatc gttccgtcag gagcaacgcc gccgactcct
     3361 cggtaaaaaa cttgcacttg gttgcctcag ccggcgcgat ctcaaatggt cgcgccggtt
     3421 ttttttgtgc ttgcattttt tcttagcgca ggcgctgaga gcctgtgtca gaactcacga
     3481 ggtgtggtca tcgagtccat tctaaccgca gagggcgcag agtgttttcg caaaggtcgc
     3541 agagaaaact ctactgggcg ttcctctgcg aattcctcgg cgtcctctgc ggttcaaaaa
     3601 ggcttgcgct gagttttgac gcgaactcaa acctctcaac gctcaggctg aactttcaga
     3661 gccgtttcct tctggacgaa cacgacaaag cgcttgccct gaggcagaac tgcatcctct
     3721 ccgcgtttga aaccactcat cagcgccagt ggcgaaaatg gaaaaagcaa cgcgctgaac
     3781 acgatcgtct tggctgccac ttcgcccccg tggctggtgc ccttgattcc attgcgcccc
     3841 gtgggaagat ccttctgcgc ctgcaacgga acgcgcgtgc cgtccgctgc gactacgtcc
     3901 tgtatggtcc aagtgagccg gccagccttg ccccaatgcc ggccacgctt ggcttcaacg
     3961 acgcgcccag ttaccagcga gttcttgtcg atgagcgtga cgccgtcgac cataaccggc
     4021 acgagcacgc gaaaactgag caagtctccc ggcttcagat cgagcgagct caccgtgtaa
     4081 acggcttcga tatcgagcgg cgtgccggcc gcgatcttaa tttcgcgcgg cggcgtaggc
     4141 tgaacggaaa tgatcagacc cggagccgaa tcagtctttg cggtcccgtc gatcgccgcg
     4201 ggcgtttgcg ccggttggat agattttgcg gcagatgact gtgccgtttc agattgtgcg
     4261 gataccgtcg ccgccagtaa tgtcagcaga attaacgcaa ataacttctc catttgatca
     4321 ggcctccctg taagcattcg ttctgcgcat acaatcgcaa tcgcgatgcc aaaatcttgt
     4381 ctcgaaaata aaactgcgcg gcgttttttt aagaacgcca cgcaggtctt ggaatttgtg
     4441 ttgatgtcga cgctaaacgt taatagttct cgctcctgta atgacgcaag tcggtatcgt
     4501 atggctctcc gtacaccctg aggtgcgaac cttactcatt catcgatcat cacgctaatg
     4561 tttgcgtttc ttttcgtcgt cctcaatttt gcgtttgagg tacttagcca atttttcagc
     4621 ggacgaacgc aaacccttat ttgcggaagc acgatccgaa gcgtctgcgt aagctaccac
     4681 gccggtgtga atattcgtca ttgtgaaaga agcagacgtg gatctgcgga agtcacccaa
     4741 tatccatttc ttggcaaaac cggctccctt tttatcggct gagccaacaa tttcaaaatc
     4801 agctagcgtc cgatcgttta cgacaaccaa aggaaccttt tttttcctta gggccgcagc
     4861 catatacgtt tcgaaacctt caacgggatg ttcagagtct tccgatttga actgggctat
     4921 atacactcgc gaatttctcg gaataagccg cgcttcaaat ggatctgcta aggtttgttg
     4981 tgaaactgga ttggggttcg ttggcgtgac cgctccttgt tgctgtgcgc agacgccacc
     5041 taccagaaag aggattaaga gactgattcg ggccatgatt tttctcctta ggtgaatggt
     5101 cctaaatgaa aagtgtcgcg cgctaatcta gcgtttagac acttactgtt tcttcctcgg
     5161 tttcttcaac gaggaacggc gaggttaatc cagactcttc tgccagaatt gcattcacaa
     5221 tcggcaagct caacgaatgt ttctttgtaa tgccggggac gttgtggccg gcggcatata
     5281 ccgcgtgacg ctcgttctcc tggtaccact cggcgaggtt tgcggtcttg tgcatgttct
     5341 caatgatctg ccgccagcct acaccggtgt tgtaagcgca gaatgaaatc tcgccttcct
     5401 gagtgccgta aggaatcacg cacatctctg tgcgacgaaa atcgtagttg aaaagatcct
     5461 gaaaccacat gccttcgacg cacaacacgc gccagttgtc gcttcggtca tcggcgactt
     5521 tcgctttcat gcggtcgttg cgatccgaac tggaattcgt cgaagacggc ttgaacagat
     5581 tgatgatctg cgaaatcggg aatccttccg gcgcgcgctc ggcgtggaag ttgcgcataa
     5641 tcgccatgcc cagttgcgcg tacgaaagct tcttgccgcg cgccgtgtcc gtgattaccg
     5701 cgacgtcctt catgaactgc tcgtaatcaa agaagtcgaa cagcgaagta aacgcgcacg
     5761 tcttcttgtt aacgactatc aaagtaaaga tgccgcagtt cggatgacaa ttgcacgacg
     5821 accaacccca gggcgcgtcg gcgccttgca gcatgtccat cacgctggtg aatgctgaat
     5881 aagacgagag cggataccaa tcacgcaaag gctgcaaacg accgcctagt tgatctttca
     5941 gatcgtgcgt catgccggcc agcgtgtagc gttgcttgat gcgcaccgcg tcggccacgt
     6001 cttcatcgcg gccggtgaat gaaactggtt ggaaagcgat ggtctgaact ttgtcgatgt
     6061 tctgggcggc aaactcgacg attgcgccga tgccatc
//
LOCUS       DASZZE010000486         1901 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_178835, whole genome shotgun sequence.
ACCESSION   DASZZE010000486 DASZZE010000000
VERSION     DASZZE010000486.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1901)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1901)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1901
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_178835"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..544)
                     /locus_tag="VHD88_09440"
     CDS             complement(<1..544)
                     /locus_tag="VHD88_09440"
                     /inference="COORDINATES: protein motif:HMM:NF012880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016624 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, disulfide as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HVS22058.1"
                     /translation="MSSQTTDRRQRVSASAASVIDAAMDRTDERSGLRASPAGQFQED
                     RKTLVDLLHQMLLIRRFEEKSAESYSLGKIGGFCHLYIGQEAVGVGAISAVRRDDYVI
                     TSYREHGQALAKGISADAVMAELFGKSGGCSHGKGGSMHLFDKSVNFLGGHAIVGAQI
                     PLATGVAFASKYKETDRVTLC"
     gene            complement(718..>1901)
                     /locus_tag="VHD88_09445"
     CDS             complement(718..>1901)
                     /locus_tag="VHD88_09445"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0052621 - diguanylate cyclase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sensor domain-containing diguanylate cyclase"
                     /protein_id="HVS22059.1"
                     /translation="FDALIGQQDIGEQVSSENIDLSNNARPDAGLASDILGAPDGSTG
                     FRSITQAQREVFALHEIAQTIGSSLNMNDTVTLVSNKLRAIVPFDTCIIFIVDDRLGK
                     ALAVHVVGDHADLFARRRISVGDGITGWVIANARSMCNSSPELDLAGLPDDISHNYRG
                     VLVSPLIREDGAFGAITLYSKGRTSYTTEHVRLLESVAQHAASALNNAITFEKTKESA
                     LTDQLTELPNARGFYMMLEQRLAECQRLNRESLALISMDVDDFKKINDQWGHAIGDRL
                     LASVARVIRKELRQMDILSRYAGDEFVAIMPMASQTMSEMVGERIRQAVSAHKFSVRT
                     GKSVTVTISIGVACFPVNGETTEELLTTAARNMQRDKHTRKNLLNLSTMPTPARIDHY
                     T"
BASE COUNT          387 a          562 c          546 g          406 t
ORIGIN      
        1 agcagagggt cactcgatcg gtttctttgt atttcgaagc aaaggccacg cccgtggcca
       61 acggaatctg cgcgccaacg atcgcatggc cgccgagaaa gttgacgctc ttatcgaaca
      121 agtgcatcga accacccttg ccgtgcgagc agccgcccga cttaccaaac aactccgcca
      181 tcaccgcgtc ggcggagatg cctttcgcga gtgcttgtcc gtgctcgcga tagctggtga
      241 ttacgtagtc atcccggcgc acggcggaga tggccccgac gccaactgct tcctggccga
      301 tgtacaaatg acagaagccg ccaatcttgc cgaggctata ggattccgcg gacttctctt
      361 cgaagcgccg aatcagcagc atttggtgaa ggagatcaac gagcgtcttg cgatcttcct
      421 gaaactgtcc cgctggcgaa gctcggagtc ccgagcgttc gtcagtacga tccatcgcgg
      481 catcgatcac gctggccgcg ctggcgctca ctctttgtct gcgatccgtt gtctggctgc
      541 tcatcgggaa acgctttgct cgtctaatga atcggccagc ttatcgctgg cctgtaaaca
      601 gagtctttcg gttaactcgg gcgattatac gcgagacgcg tggcgagaca aacccgcaaa
      661 agaaaagcac gccagacgaa gtccggcgcg ccctggtcga tctccttgga accggtctta
      721 ggtgtaatgg tcaattctcg ccggcgtggg catcgttgac aggttcagaa ggttcttgcg
      781 ggtatgcttg tcacgctgca tgttgcgcgc ggcggtggtc agcaattcct cggttgtttc
      841 gccgttcacc gggaagcagg caacgccgat gctgatcgta accgtgacac tcttgccggt
      901 cctgaccgaa aacttgtggg ccgaaaccgc ctgtcgaatt ctttctccga ccatttcgga
      961 cattgtctga gaggccattg gcatgattgc cacgaattcg tcgcccgcgt agcgggaaag
     1021 aatgtccatc tggcgcaact ctttgcgaat cacccgagcc acgctggcca gcaggcgatc
     1081 gccgatggcg tgtccccact gatcgttaat cttcttaaag tcgtcgacgt ccatgctgat
     1141 caaagccagc gactcgcgat tcaagcgctg gcactcggcc agtctttgct cgagcatcat
     1201 gtagaagccc cgcgcgttcg gcaattccgt cagctggtcg gtgagcgcgc tttctttcgt
     1261 cttctcgaaa gtgatcgcgt tgttcagcgc cgaggccgcg tgctgggcaa ccgactccag
     1321 caggcgcaca tgctccgtgg tgtaagaggt gcggcccttt gagtaaagcg tgatcgctcc
     1381 gaaggcgccg tcctctcgga tcagaggcga aaccaaaacg ccgcgataat tatgcgaaat
     1441 gtcatccggc agcccagcga gatcgagctc cggcgacgag ttacacattg agcgagcgtt
     1501 cgctatcacc caaccggtga taccgtcgcc gacgctgatc cggcgccggg caaagaggtc
     1561 cgcatgatcg ccaaccacgt gcaccgcgag cgccttgcca agccgatcgt cgacaatgaa
     1621 aattatgcag gtatcaaacg gcacgatcgc tcgcagcttg ttcgagacga gggtgactgt
     1681 gtcattcata tttagagacg agccgatggt ctgcgcgatc tcgtggagcg caaacacctc
     1741 gcgctgtgcc tgggtgatcg agcgaaatcc tgtgctgccg tccggcgcgc cgagaatgtc
     1801 tgaggccaaa ccagcatccg gccgggcgtt attgctgagg tcgatattct cggaagaaac
     1861 ttgctcccca atgtcttgct ggccgatcag ggcgtcgaat t
//
LOCUS       DASZZE010000487         2632 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_309268, whole genome shotgun sequence.
ACCESSION   DASZZE010000487 DASZZE010000000
VERSION     DASZZE010000487.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2632
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_309268"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..220
                     /locus_tag="VHD88_09450"
     CDS             <1..220
                     /locus_tag="VHD88_09450"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HVS22060.1"
                     /translation="PAVRRGSSETPRTHRITISVGVAAYPDDGRDPIQLVELADSALY
                     RAKRNGRNCVCAYRPAVPTDVVRLRPRS"
     gene            368..967
                     /locus_tag="VHD88_09455"
     CDS             368..967
                     /locus_tag="VHD88_09455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS22061.1"
                     /translation="MRTSSLLTASIFIALCAIAVAAQQPEQRASLNGAAIAFDGKGAP
                     AIEARLLTTVLNGSQDSPVTNVRLVIKNPTANSYTYVTGLATFYDAAAVRCGEGLFKV
                     DALAPNESAEADTPGLRLRCSPATWRIVATNLLTRANETAKPVEATPTPVEPAVVEKP
                     APVNFIISIDGEQHPIQINRPVVLKLGTRNRKIVLRNVP"
     gene            complement(971..2230)
                     /gene="larA"
                     /locus_tag="VHD88_09460"
     CDS             complement(971..2230)
                     /gene="larA"
                     /locus_tag="VHD88_09460"
                     /inference="COORDINATES: protein motif:HMM:NF033504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050043 - lactate racemase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent lactate racemase"
                     /protein_id="HVS22062.1"
                     /translation="MPTIELGYGPEAIKFDYDDALFDVLAPDTSKAHPLSDAEIGAAL
                     DAPIDSRPLEDLVEPGDSVLMVASDATRATGSPQVINLLVRRLIQNGIAPGDIAIIFA
                     TGIHRPVRQEEKLALLSPFIAQRIRTIDHDAYDALQLIQIGVDGNGAAVEVNRALKDF
                     SKVILTGAVGFHYFAGFTGGRKAICPGLASAETIKATHMLALDFERAGRRAGVGAGSL
                     SGNAVNEECERVAAMIDPAFIVNAIVDDRGRVEQVFAGDWRAAHARACEVYASSHAQR
                     IPEKRELVIVSCSGSPYDINMIQAHKALDMAAHACVDGGLIILLAECGDGLGRPDFLK
                     WFESADSRALEARLREAYEVNGQTAWALLTKTERFRVHIITKLSDDDVRRMRMFPARS
                     IEEALAEVTPNSKGYLMPRGAALLPLA"
     gene            complement(2304..>2632)
                     /locus_tag="VHD88_09465"
     CDS             complement(2304..>2632)
                     /locus_tag="VHD88_09465"
                     /inference="COORDINATES: protein motif:HMM:NF028226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cation transporter dimerization
                     domain-containing protein"
                     /protein_id="HVS22063.1"
                     /translation="KESVNVLLEAIPAGMNMVEVEQTIANVHGVLAVHDLHVWTIGSG
                     MVCCSCHVMVNEQSVRSGENVLRAVTEELAHNFGIAHTTIQVEVEGCEPNDMYCVKRV
                     AEHHRH"
BASE COUNT          536 a          798 c          757 g          541 t
ORIGIN      
        1 cccggccgtg cggcgcggca gcagcgagac cccgcgaact catcgcatca cgatcagcgt
       61 cggcgtcgct gcctatcctg acgatgggcg tgacccgatt cagctcgtgg agttggccga
      121 ctcggcgctc tatcgagcga agcgcaatgg acgtaattgc gtctgcgcct atcgtccggc
      181 ggttcctacg gacgtagtgc gtttgcggcc gcgatcttaa ggaagcgttc cgtgtcagaa
      241 gcccgacccc ggggtccccg accgggcagc ccggttgggg tgggacggtg agggagggca
      301 aagttgcgcg gggcattagc ccgaccgtga gggagggctc aaatcaataa acccaaggag
      361 atctatgttg agaacatcat cactactaac cgcaagtatc ttcatcgcgt tatgtgcgat
      421 tgcagttgcc gcgcagcaac ccgaacaacg cgcgtcgctc aacggcgccg ccatcgcgtt
      481 tgacggtaaa ggagcgccgg caatcgaagc gcgattgttg acgactgtgc tgaacggttc
      541 acaggattcg ccggtgacca acgtgcggct ggtcataaag aacccgaccg ctaattcgta
      601 cacttacgtt acgggcttgg ccactttcta tgacgcagcc gcggtgcgct gcggcgaagg
      661 attgttcaaa gtcgacgcgc tggcgccgaa cgaatctgcg gaagccgaca cgccgggcct
      721 gcgcctgcgc tgctcgcccg caacctggag gatcgtggcg accaatctgc tgacgcgcgc
      781 aaacgaaacc gcgaagcctg ttgaggcaac gccgacgccg gtggaaccgg ccgtggttga
      841 aaagcctgcg ccggtcaact tcatcatcag catcgatggc gaacagcacc cgattcaaat
      901 caaccgaccc gttgtgctga aactggggac gcggaatcgg aagatcgttc tgcgcaacgt
      961 gccgtgacaa tcacgcgagg ggtaagagtg ccgcgccgcg cggcatgagg tagcctttgc
     1021 tgtttggcgt aacttcagcc agcgcttcct caatcgagcg ggccggaaac atcctcatcc
     1081 tgcgcacgtc atcgtcagag agtttcgtga tgatatgaac gcggaatcgt tcggtctttg
     1141 tcagcagggc ccacgcagtt tgcccgttta cttcatacgc ttcgcgcaga cgcgcttcga
     1201 gcgcgcgcga gtctgctgac tcgaaccact tcagaaaatc aggccggccc aagccgtcac
     1261 cgcattccgc caatagaata attaggccgc catcgacgca ggcgtgtgcc gccatgtcga
     1321 gcgctttgtg cgcctgaatc atgttgatgt cgtaaggcga gccgctgcaa ctgactatta
     1381 ccagttcgcg cttttccggg attcgctggg catgcgacga tgcataaacc tcgcatgcgc
     1441 gcgcgtgcgc cgcgcgccaa tccccggcaa agacttgttc cacgcggcca cgatcgtcga
     1501 cgatcgcgtt tacgataaac gccggatcga tcatcgccgc gacgcgttcg cattcttcat
     1561 taaccgcgtt cccgcttagc gagcctgcgc ccacgccggc gcgtcgtccg gcgcgttcga
     1621 aatccagcgc cagcatgtgc gtcgctttga tcgtctcggc tgaagccagt cccggacaga
     1681 tcgctttgcg tccgccggta aacccggcga agtaatgaaa acccaccgcg cctgtcagga
     1741 tcaccttcga gaaatccttc agcgcgcgat tgacttcaac tgccgctcca ttaccgtcga
     1801 ccccgatttg aatcaactgc aaagcgtcat aagcgtcgtg gtcgatcgtg cgtatgcgct
     1861 gagcgatgaa gggtgaaagc agcgcgagct tttcttcctg acgcaccggc cggtggattc
     1921 cggtcgcaaa gataatcgcg atgtcgcctg gcgcaattcc gttctgaatc agcctgcgaa
     1981 ccagcaggtt gatgacttgc ggactgccgg tcgcgcgcgt agcgtctgaa gctaccatca
     2041 gcacgctgtc gcctggctca accaaatctt cgagtggtcg cgaatcgatg ggagcgtcaa
     2101 gcgccgcgcc gatttctgcg tccgaaagtg gatgggcttt gctcgtgtcc ggcgccagca
     2161 catcaaagag ggcgtcgtcg taatcaaact tgatcgcttc cggcccgtaa ccgagttcga
     2221 ttgtcggcat gtgtttagag ttcaaccttc cggattgcgg tctgcaaacc agacaaacgt
     2281 tcaaggcttt gaccgcggtg cacctagtgg cgatgatgct ctgcgactct cttcacgcaa
     2341 tacatatcgt ttggctcgca accctccact tccacctgga tggttgtgtg ggcgatgccg
     2401 aaattgtgtg ctagctcttc ggtaacggcg cgcaggacgt tctctccgct acgcacgctt
     2461 tgctcgttga ccatgacgtg gcagctacaa caaaccatgc cggagccgat agtccaaaca
     2521 tgcagatcgt gtactgccag cacgccatgt acgttcgcga ttgtctgctc aacttcaacc
     2581 atattcatac ccgcaggaat cgcctctaat agcacgttga ccgattcttt aa
//
LOCUS       DASZZE010000488         1879 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_243554, whole genome shotgun sequence.
ACCESSION   DASZZE010000488 DASZZE010000000
VERSION     DASZZE010000488.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1879)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1879)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1879
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_243554"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..873
                     /locus_tag="VHD88_09470"
     CDS             <1..873
                     /locus_tag="VHD88_09470"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HVS22064.1"
                     /translation="RNRAKDGSIYWVDTTIVPFLNSEGKPYQYVAIRHDITQRKLAEE
                     KVLQQAAELQRAAQLSFVGELAAGLAHEIKNPLAGIQGAVDILIRRRDKNDPEREVLE
                     GMRHEVVRIDRTVRALLDRARPRLVSVRASSLTDIVGRAVNLARAQLTNAATHGHRVN
                     IEFEPPADPITISIDPAQIEDAVLNLIINAIEAADGDGQVKIRVARSQNDRAEEFEDE
                     AIVEVSDNGRGIGEEDLTRIFNPFFTTRPGGTGLGLPAVRRIARAHGGGVEVRSSLGN
                     GSTFTLHLPISAPK"
     gene            1200..>1879
                     /locus_tag="VHD88_09475"
     CDS             1200..>1879
                     /locus_tag="VHD88_09475"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HVS22065.1"
                     /translation="MKIECILCPTDLSPDSDEALRYAVALSRAYNAELILLHCDLTGG
                     GATKPDTHDKAAQTIKGSLAKHSGSADLIGLDWKTLIVSCDDPGAAITREAAKYGVDL
                     IVMRSRRRPHRAALLGSTAESVSRTAPCPVLVMHTDERDWVTASEARIELKRVLVPYD
                     FSDYSELALNYALSFAQEYQSELHLLHVLPPFTLNEPEISWYPLGKKEPITRPCAVCR
                     RLFVPKPI"
BASE COUNT          425 a          537 c          527 g          390 t
ORIGIN      
        1 cgcaatcgcg cgaaagacgg cagcatctac tgggtggaca cgacaatagt cccgtttctt
       61 aattccgaag gcaaaccgta tcagtacgta gccatcaggc acgacatcac gcaacgcaaa
      121 ctagccgagg agaaagttct ccagcaggca gccgagctgc aacgtgcggc acagctctcc
      181 ttcgtcggcg aacttgctgc tggcctggcg cacgagatca aaaatccgct ggcgggcatt
      241 caaggtgcag tcgatatctt gattcgtcgc cgcgacaaaa acgatccgga gcgcgaagtt
      301 ctagaaggta tgcggcacga ggtcgtgagg atcgatagga cggtccgcgc gctgcttgat
      361 cgcgcgcgcc cgcgactagt ctcggtaaga gctagctcgc tgactgatat tgtgggacgc
      421 gctgtcaacc tggcacgcgc gcagctgacc aatgcagcca cgcatggcca tcgcgtcaac
      481 atagaattcg agcctccggc ggatccgata accatctcca tcgacccggc gcaaatcgaa
      541 gacgccgtgc taaacctgat catcaatgca atcgaggcgg cagacggtga tggtcaagtt
      601 aagattcgcg tcgctcgatc tcaaaacgat cgcgccgaag aatttgaaga cgaagcgata
      661 gtcgaagtat cagacaatgg gcgcggcatc ggcgaagaag atctcactcg catcttcaat
      721 ccgttcttca ccacgaggcc cggaggaacc ggcctcggcc ttcccgcagt acgccgcatt
      781 gcgcgggctc acggcggagg ggtcgaagtc agatcttcct tgggcaatgg ttcgacattt
      841 acgctccatc ttccgataag cgcgccaaag taaattcgtc cttcctcaat actgtttcca
      901 aagcccctgg tccacagcgt cttggtggcg atcgggtttc tctacgcttt tggtcggtgg
      961 catcgctgca agcctgtcat atggcgttgg tgtactcctt aagagcctcg cgcgatgaac
     1021 cgcagattaa ctaacaaact tggattctct gcatgggcaa agtttctcac gagcatgcgg
     1081 aaaagcccac aaggccaaga acaacctcgt cgataatgag aaaaataccc gcgatttgag
     1141 cggcacagtc gttgctcaaa caaccgcaag gaggcagggc tctaagcctg acgaagctta
     1201 tgaaaatcga gtgcatcctc tgtcccaccg atctttcgcc ggattccgac gaggctttgc
     1261 gttatgccgt ggcgctgtcg cgggcgtaca acgccgagct gatcctttta cattgcgatc
     1321 tgaccggcgg tggggcgacg aagccagata cccacgataa agcagcgcag acgatcaagg
     1381 ggtcgctggc gaagcattcg gggtcggctg accttattgg gctcgattgg aaaactctga
     1441 tcgtcagttg tgatgacccc ggcgcggcaa ttacgcgtga agccgccaag tatggtgttg
     1501 acctgatcgt catgcgctcg cgccgacggc cgcatcgcgc ggcgttgttg gggtcgaccg
     1561 ccgagtcggt ttcacggacc gcaccctgcc ctgtcctggt gatgcatacc gatgaacgcg
     1621 attgggtaac cgcctctgaa gctaggatcg aactgaaacg cgttctcgtg ccttacgatt
     1681 tctcggatta ctccgaattg gcgctcaact atgcgttgtc gttcgctcag gagtatcaat
     1741 cagagttgca tctgctccac gtgctgccgc ctttcacgct gaacgaacca gagatttcgt
     1801 ggtacccgct cggcaagaag gaacctatca caaggccgtg cgccgtttgc agaaggctgt
     1861 tcgtgccgaa gcccatctt
//
LOCUS       DASZZE010000489         2258 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_159951, whole genome shotgun sequence.
ACCESSION   DASZZE010000489 DASZZE010000000
VERSION     DASZZE010000489.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2258)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2258)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2258
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_159951"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1544)
                     /locus_tag="VHD88_09480"
     CDS             complement(<1..1544)
                     /locus_tag="VHD88_09480"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HVS22066.1"
                     /translation="MDDAQSQFVADSQEIVERLFRDLEQLRGVRLQGPKRRELAARIF
                     RRVHTLKGSAGSFGLKTVTRVAHEFEGVLDGVRLGRITIDDSLLDLFEDATNAIAQAL
                     TRSSTTESDSNSAALIKRLNSIAITSTKQGKIASGLRSALPAEIARALSEYDLQHARE
                     AVREGATLFIVSAGLPIETFDEAFRALSKLLGQSGEIIATVPGEPASADEINFRLLYA
                     AELVSPEVTRRASEFGRVEVSTVKIETPAIVEKAPVETSNAQSATFDPRASVRVELDQ
                     LDELISDASELFRDTNNALVSFAGPANKEAVEAAASHLRRRFVELEERLIKLRLIPLA
                     DILERAAARAGRIAARQLEKEVEFEIVGGEVEIDKSLADAIAEPLLHLVRNAVGHGIE
                     TPEERNAAGKSATGKVKLAAFNEGSRIQISVSDDGRGIDLNRIASAASAHGIADQGST
                     LTMDQCLRLIFRPGFSTTTEVSELSGRGIGLDVVDRAMAQAGGEVRVVTEAGAGTTFV
                     MILPAAL"
     gene            complement(1614..2120)
                     /gene="nusB"
                     /locus_tag="VHD88_09485"
     CDS             complement(1614..2120)
                     /gene="nusB"
                     /locus_tag="VHD88_09485"
                     /inference="COORDINATES: protein motif:HMM:TIGR01951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HVS22067.1"
                     /translation="MGSRRKARECALQMLFAADVSNMRADDLVRTFWSELADGELEPQ
                     AREFATRLATGALANLAEVDERIRSRAEHWRISRMALVDRNVLRLAVYEFLHEPTPRT
                     VTINEALEIARRFSTYEATQFINGILDAIKRDLDQTSPETGTSVDDDVEGDAPTENAP
                     AVSSPEEE"
BASE COUNT          465 a          660 c          627 g          506 t
ORIGIN      
        1 agcgccgcgg gcagaatcat cacgaacgtc gttccggccc cggcttcagt aactacgcgc
       61 acttcgccgc cggcttgagc cattgcgcga tcgacaacgt cgaggccaat gccgcggcct
      121 gacagttctg agacttcagt cgtagtagaa aagcccgggc ggaaaatcaa tctcaagcac
      181 tggtccatag tcagcgtcga gccctggtca gcaatcccgt gtgcactcgc ggctgaagct
      241 atgcgattca gatcaatgcc ccgaccatca tcgctgacgg aaatctgaat gcggcttccc
      301 tcgttgaaag ctgccaactt cacttttccg gttgcgctct tgcccgcggc atttcgctct
      361 tcgggggttt cgatgccgtg accgactgcg tttcgcacca agtgcaacaa aggttcggcg
      421 atggcatcgg ccagcgactt gtcaatttcg acttcgcctc cgacgatttc aaactcgact
      481 tccttttcca actgccgcgc ggctattcgg cctgcgcgcg ctgcggctcg ctctaaaatg
      541 tcagccagcg ggatcaggcg cagcttgatc agacgttctt caagttcgac aaaccggcga
      601 cgcaaatgcg aagccgcggc ttcgacggcc tctttgttgg cgggcccggc aaatgacacc
      661 agcgcgttat tcgtgtcgcg aaacaactcg ctcgcatccg aaatcagttc gtcgagctga
      721 tccaattcga cgcggaccga agcgcgcgga tcgaacgttg ccgactgcgc atttgaagtt
      781 tcaacgggag ccttttcgac gatggctgga gtttcgatct tgaccgtgct gacttcgacg
      841 cgcccaaatt ctgacgcacg gcgtgtgact tccggagaga caagttcggc ggcatagagc
      901 aaccgaaaat tgatttcgtc cgcgcttgca ggttcgcccg gaacggtcgc gattatctcg
      961 ccgctctggc cgaggagctt gctgagcgcg cgaaacgctt catcaaaagt ttcgattgga
     1021 agacccgcgg acacaatgaa aagcgtcgcg ccttcgcgaa cggcttcccg tgcgtgctgc
     1081 aggtcgtact cactgagcgc gcgcgcaatc tcagcaggca atgcagagcg caaaccgctg
     1141 gcaatcttgc cttgtttggt gctggtaatg gcaatcgagt tgagacgttt gatgagggcg
     1201 gccgagttcg aatcactttc cgtggtcgag gatcgcgtca gcgcttgtgc gatcgcattt
     1261 gtcgcgtctt caaacaagtc gagcaacgaa tcgtcgattg tgatccggcc cagccgcacg
     1321 ccatccagga cgccttcgaa ttcgtgcgcc actcgcgtga cggttttcag tccaaacgaa
     1381 ccggcggaac ctttcagagt gtgcactcga cgaaaaatgc gcgctgctaa ctcgcgccgc
     1441 ttcggtccct gcaagcgcac gccgcgcaac tgctcgagat cgcgaaagag tcgctcgacg
     1501 atttcctgcg agtcggcaac aaactggctt tgcgcgtcat ccatcgaacc gcagtttagc
     1561 tcaatttgtc gctttccgtc gcgctcgttt cgttcgtaag aagtctggag cggttactct
     1621 tcttctggac ttgagaccgc tggagcattc tcggttggtg cgtcgccttc gacatcgtca
     1681 tcaaccgacg ttccggtttc cggtgacgtt tgatcgaggt cgcgtttaat cgcatcgaga
     1741 atgccgttga tgaattgggt ggcttcgtag gtggaaaacc gtcgagcaat ttcaagcgct
     1801 tcgttgatag taaccgtacg aggtgtcggt tcgtgaagaa actcgtaaac cgcgagcctc
     1861 agcacgttgc gatcgaccag cgccatgcga gaaatccgcc agtgttcggc gcgggaacgt
     1921 atgcgctcgt caacttccgc gaggtttgct aacgcgcccg tggcgagccg cgtggcgaat
     1981 tcacgcgctt gaggctcaag ctcgccatcg gccaactcag accaaaacgt gcgcacgaga
     2041 tcatccgcgc gcatgtttga aacgtctgcc gcaaagagca tttgcaaggc gcattcgcgc
     2101 gccttacgtc gcgaacccat aaactaccgt gaaaggtggc aggtgacggg tgataagtga
     2161 agccaggttt ttcatcttgt tacctgtacc ttatcaccca ttaccgattt gtacagattt
     2221 actaattcaa ccgctgcggt ggcggcctca aaaccttt
//
LOCUS       DASZZE010000490         4897 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_160986, whole genome shotgun sequence.
ACCESSION   DASZZE010000490 DASZZE010000000
VERSION     DASZZE010000490.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4897)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4897)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4897
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_160986"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..390
                     /locus_tag="VHD88_09490"
     CDS             <1..390
                     /locus_tag="VHD88_09490"
                     /inference="COORDINATES: protein motif:HMM:NF013030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS22068.1"
                     /translation="ADPHLHRTLSAIRGAGAQAGIAINPATSLSALDEALKFADYVLL
                     MSVNPGFGGQKFIPASLDKVRRLRKMIDERGMKTRIEIDGGIDSENVAEVAGAGAEII
                     VSGSAIFGAPDPAVALRELREATVLWV"
     gene            522..2084
                     /gene="bamD"
                     /locus_tag="VHD88_09495"
     CDS             522..2084
                     /gene="bamD"
                     /locus_tag="VHD88_09495"
                     /inference="COORDINATES: protein motif:HMM:TIGR03302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0065003 - protein-containing complex
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HVS22069.1"
                     /translation="MSFSLVRKVPHCGAMRLFFLALAVSVLALSTGTAAFGQGSKNQA
                     QSDLSAVQRLEIMRSKLESMRRSLDNAIAATNAKDTGDKNKNLDDPRERLRGLDKEVG
                     SVLSEVSDIRSKEDRADKYDKSRLDALETSVADLNARVEVALQSTASARAAQSETSSN
                     YRPKPEKGKRRMFGLLPGKSNEKYAELMGGIAPGRDRVLFMEAAKEVRKGNHETGRLL
                     FTTIITTYPDSPYLPMAKLAIADSFYLEGTTSSLIQAGQAYQDWLTFFPTDPLTCDAM
                     LKVAETEMRQMGLSDRDITHARKAEQRLKVMLQQCPQTRLRPDAEMRLRQVQDSLAMH
                     NLVIARFYQDSRYPQTKQGLRGAQDRLKEIIEKYPNFCLMDEALFRQGKTFQEEEEPD
                     KAAKYYQQLVRDHPNSDYVEKAKDQLNIIGAPIPDPDPIKKDLPSPCEKPTFMQNMMQ
                     QITGSADVTTSRDGILITKGGEGNDLIDKAIANNGELPQGVQPVIQRTPQTPRATPLP
                     TRKPEVAPSPKP"
     gene            2287..2766
                     /locus_tag="VHD88_09500"
     CDS             2287..2766
                     /locus_tag="VHD88_09500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS22070.1"
                     /translation="MTPNSESVQNELFRRHRSATFVVIGFLALAIALLAIAFFATKFI
                     YRPGDPSIVMGLWIAILVFGLGAFVLRRTRFAALRLKDIAALRGPSGLLKTLQDTTIQ
                     VASIGGAIALMGFIITILKGDWTDMLRAAGVSAIVLVYCFPFKSAWQRALIQLAPEG"
     gene            complement(2778..3875)
                     /locus_tag="VHD88_09505"
     CDS             complement(2778..3875)
                     /locus_tag="VHD88_09505"
                     /inference="COORDINATES: protein motif:HMM:TIGR01420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus twitching motility protein PilT"
                     /protein_id="HVS22071.1"
                     /translation="MARLDDLLRQMKQQGASDLHMAAGSAPYMRINGEMIKLNYRSVS
                     PETCQSLIFEILNENQRQHFEENWDLDLSYALKGVGRFRANVFMQRNGIGAAFRLIPE
                     GIKTIRELDLPEQLSDLIDVSEGLILLTGPTGAGKSTTLASLIHSINVEQQKHIITIE
                     DPIEFVHENQKCLINQREVAGHTKSFSGALRAALREDPDIILVGEMRDLETIALAITA
                     AETGHLVFATLHTNSAVKTVDRIIDVFPEAQQAQIRVMLAESLRGVAAQALLQRADRS
                     GRVPVLEILVNVPAVANLIREGKTHQIPSMMQTGRAHGMSTFETSIQDLIQKGLISKE
                     DGTSFIRRRSAGKQLTSPGGHAIRLNSPAVN"
     gene            complement(4332..4478)
                     /locus_tag="VHD88_09510"
     CDS             complement(4332..4478)
                     /locus_tag="VHD88_09510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS22072.1"
                     /translation="MRANEETMPINAITISNSGKLKPVALLSFGFFLGKFITCLRMLL
                     RTYY"
     gene            4567..>4897
                     /locus_tag="VHD88_09515"
     CDS             4567..>4897
                     /locus_tag="VHD88_09515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS22073.1"
                     /translation="MRRHGGANGANIVFNSTTSYTVNIDFGGTGTPTARTVTLPTGTT
                     LSYTLPPANTSIDPSTTPITIAYDWRGRTANTVLLTLTDSTAGVGSSTVVVGPAGDVS
                     TDTTVTGP"
BASE COUNT         1102 a         1350 c         1353 g         1092 t
ORIGIN      
        1 gccgacccgc acctgcaccg cacgctttca gcaataagag gtgcgggagc gcaagcgggc
       61 atcgccatca atccagcgac ttcgctgtcg gctttggacg aagcgctaaa gttcgccgat
      121 tacgttttgc tgatgtcagt caatcccggt tttgggggtc agaagtttat tccggcttcg
      181 ctcgacaaag ttcgccgctt gcgcaagatg atcgacgagc gcgggatgaa aactcgcatc
      241 gagattgacg gcggaataga cagcgagaac gtagccgaag tcgccggtgc gggcgccgag
      301 ataattgttt caggttcagc tatttttggc gcgccggatc ccgccgtggc cttgcgcgag
      361 ttacgcgaag caacggtctt gtgggtctga acgattgcgg atttcgaatt gcggattgcg
      421 gattttcgct gctggctccc ctcgacttta cgccggttag gaattgacgg cttttcagtc
      481 taaaatccac ctgctcacga attggtttgg aggtttttcc gatgtctttt tctttagtga
      541 gaaaggttcc ccattgcggc gcgatgcgct tgtttttcct tgcgttggca gtctctgtgc
      601 tggcgctctc aaccgggacg gcggcgtttg gccagggcag caagaatcag gctcaaagcg
      661 atctttcagc cgtgcaacgc ctcgagataa tgcgatcgaa actcgaatcg atgcgtcgtt
      721 ctctcgacaa cgcgatcgcg gcgacgaacg cgaaggacac cggagacaaa aacaagaacc
      781 tcgacgatcc acgcgagcgt ctgcgcggcc tcgacaaaga ggttggttcg gtattgagcg
      841 aagtcagcga tatacgttcc aaggaagatc gcgcggacaa gtatgacaaa tcccggctcg
      901 atgcgctgga aacctcggtc gccgatctca acgcgcgcgt cgaggtagct ttgcaatcga
      961 cggcgagcgc ccgcgcggcg caaagcgaga catcttcgaa ctatcgtcca aagccggaaa
     1021 agggcaagcg tcgcatgttt ggattgctgc ccggcaagag caatgagaag tacgctgaac
     1081 tgatgggcgg gatcgcgccg ggccgcgatc gcgttctgtt catggaagcc gccaaggaag
     1141 ttcgcaaagg caatcacgaa acgggccgtc tcctcttcac gacgatcatc acaacgtatc
     1201 cagactctcc ttacctgccg atggcgaaat tggcgatcgc agattcattc tatctggaag
     1261 gcacgaccag ctcgctgatc caggccggac aagcttatca ggattggctc acgttctttc
     1321 cgacggatcc gctgacttgc gatgcgatgt tgaaagtcgc ggaaaccgaa atgcgacaga
     1381 tgggactttc cgatcgcgac attacgcacg cgcgcaaagc cgaacaacgt ctcaaggtga
     1441 tgctgcagca gtgtccccag acacgacttc ggcccgatgc cgaaatgcgt ctgcgccagg
     1501 tgcaggacag tctggcaatg cacaatttgg ttatcgccag gttctatcaa gactcgcgtt
     1561 acccacaaac gaaacaagga ttgaggggcg cgcaggatcg cttgaaagag atcatcgaga
     1621 agtatccgaa cttctgtttg atggatgaag cgctgtttcg acagggtaag acgttccagg
     1681 aagaagaaga gcccgacaaa gccgccaagt actatcaaca gctggtgcgt gatcatccca
     1741 acagcgatta cgtcgagaaa gcaaaagacc aactgaatat cattggcgcg ccgattcccg
     1801 atcccgatcc gatcaaaaag gatttgccgt cgccgtgtga aaagcccacg ttcatgcaga
     1861 acatgatgca gcagattacc ggcagcgcgg acgtcactac cagccgcgac ggcatcctga
     1921 ttaccaaagg cggcgaagga aacgatctga tcgacaaagc gattgccaac aacggcgagc
     1981 tgccgcaagg tgtccaaccg gttatccaac gcacaccgca gacgccgcgc gcgacgcctt
     2041 tgccgacccg aaagcccgaa gttgctccct cgccgaaacc gtaagaacct tttaatgaaa
     2101 cccgacaact gtcaggttgg cgataatgcc ggcgggtttc tttagagtcg ggctaatgcc
     2161 cgaccttgct ctacttgttt agagtcgggc taacgtccga ccatgcgctg cgttttcaca
     2221 agcgtttagc aatctctaat ttccgagttt tgacacaacg cgataacaag tgcgaagctc
     2281 cccgctatga cgcccaattc tgagagcgta cagaacgaac tcttccgtcg tcatcgtagc
     2341 gctacgttcg tagttatcgg gtttctggcg ctggcaatcg cgcttttggc gatcgcgttt
     2401 ttcgccacaa agttcatcta tcgacccggc gatccgtcaa tcgtgatggg actgtggatt
     2461 gcgattctgg tgttcgggct gggcgcgttc gtgctccggc gcacaaggtt tgccgcgttg
     2521 cgtttgaaag atatcgccgc gttaagaggc ccatcgggtt tgttgaagac tttgcaggac
     2581 accaccattc aggtcgcatc gatcggcggc gccatcgcgc tgatgggatt catcatcacg
     2641 atcctcaagg gcgactggac cgacatgctg cgcgccgccg gcgtgtcagc gatcgtgctg
     2701 gtgtactgct tccctttcaa gagcgcgtgg caacgcgcgt tgattcagct agcgcctgaa
     2761 gggtgatcgg ttaagcttca attcactgct ggactattca gacggatcgc gtgaccgccg
     2821 gggctggtga gttgcttgcc ggcgctgcgt ctgcggatga aactggtgcc gtcttctttc
     2881 gagatgagac ctttttgaat cagatcctga atagatgttt cgaatgtgct catgccgtgc
     2941 gcgcgtcccg tttgcatcat tgaaggaatc tgatgcgtct tgccttcgcg aatcagattg
     3001 gcgacggcgg gcacgttgac cagaatctca agcaccggaa cccgtccgct gcgatccgcg
     3061 cgctgaagca gagcctgcgc cgcgacacct cgcaaacttt cagccagcat cacgcgaatc
     3121 tgcgcctgtt gcgcttcggg aaaaacgtcg atgatgcggt caaccgtttt aacggcgctg
     3181 ttggtgtgca gcgtggcaaa aaccagatgg ccggtttccg cggcggtgat cgccagcgcg
     3241 atcgtttcca aatcgcgcat ctctccgacc agaatgatgt ccgggtcttc gcgcaacgcc
     3301 gcgcgcagcg cgccgctgaa tgattttgtg tggccggcaa cctcgcgctg attgattagg
     3361 cacttttggt tctcgtgcac aaactcgatc gggtcttcga tcgtgatgat gtgtttttgc
     3421 tgctcgacgt tgatcgaatg aatcagcgaa gccagcgtcg tgctcttgcc tgcgccggtc
     3481 gggccggtca gaagaattag tccttcggaa acgtcaatca gatccgaaag ctgctccggc
     3541 agatcgagtt ccctgatcgt cttgatgcct tcgggaatca aacggaaagc cgcgccgatt
     3601 ccgttgcgct gcatgaagac gttcgcgcga aagcgcccga cgcccttgag cgcatagctc
     3661 agatcgagat cccaattctc ttcgaagtgt tgccgctgat tctcgttgag gatttcaaag
     3721 atcagactct gacacgtctc aggagaaacg ctgcgatagt tcagcttgat catctcgccg
     3781 ttaatccgca tgtaaggcgc ggagccggcg gccatgtgca ggtctgaagc tccctgctgc
     3841 ttcatttgtc tgaggagatc atctagccgg gccatagttc aaatctcggt tcgttcacgg
     3901 caagacgagc cgtcatgtcg aggcatgcgt gtttagcttc tgctattacc taagcaaatc
     3961 ggtgaggtgg aagatccgaa ttgcggacct ttgaaagaac gaaactggtt ttgtagtttg
     4021 gcgatcagcc tcgaccagtt cgtatgctgc aagctcacag ggcatcgccc agttagtgag
     4081 ccgaatccac tataacataa aggctcaacc tcgcacatat ttttggcggc tcctcgcagc
     4141 cagaaccact atgaagtccg gttccctggt gtgttacgcc cggttacgac accggcccaa
     4201 aagtctgcgc gaggcactgc aattcctacg tttttcaaag catcgaaggg tggcattgtc
     4261 cttgctatac ctggctgtgc gttcgctcgt ttctaaacga gattaacgat cgagaagaaa
     4321 agttatcaag ttcagtaata ggtgcgaagt aacatgcgca aacaggtaat aaattttccc
     4381 aagaaaaaac cgaaactcag tagcgccacc ggcttcagtt tgcccgaatt gctaatcgtg
     4441 atcgcgttaa tcggcatagt ttcttcgtta gctctcataa gcttccagac gtccaataag
     4501 agtttcaagc ttgcaggcgc gacgcgcact ctttccactt atctggaaaa agctcgagta
     4561 gactccgtgc gccgccacgg aggcgcgaac ggcgcgaaca tagtttttaa cagcacgaca
     4621 agttacacgg taaatatcga tttcggcggc accggcacac ctaccgctcg cacggtcacc
     4681 ctgccaacag gaacaactct cagttacact ttgccgcctg cgaacaccag catcgatcct
     4741 tccaccaccc caataacaat tgcatacgat tggcgtgggc gtacggcgaa caccgtcttg
     4801 ctcaccctga cggattcgac tgcgggcgtc gggtccagca ctgtagtcgt cgggccggca
     4861 ggtgatgtgt caaccgatac cacagttacc gggcccg
//
LOCUS       DASZZE010000491         1590 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_161425, whole genome shotgun sequence.
ACCESSION   DASZZE010000491 DASZZE010000000
VERSION     DASZZE010000491.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1590)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1590)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1590
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161425"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..213)
                     /locus_tag="VHD88_09520"
     CDS             complement(<1..213)
                     /locus_tag="VHD88_09520"
                     /inference="COORDINATES: protein motif:HMM:NF015228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS22074.1"
                     /translation="MAKQSKLNTEESNSAFDRVRLARHPERPHTLDFIERLFEGFVEV
                     HGDRRYADDPAIVCGFARFHGMPVVVI"
     gene            complement(218..>1590)
                     /locus_tag="VHD88_09525"
     CDS             complement(218..>1590)
                     /locus_tag="VHD88_09525"
                     /inference="COORDINATES: protein motif:HMM:NF025930.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="OB-fold nucleic acid binding domain-containing
                     protein"
                     /protein_id="HVS22075.1"
                     /translation="EEMAQQEQKFILGAVARGIKRDKAQQIFSLMKQFADYGFPKAHS
                     VAYAYLAFQTAYLKAHFPEHFYAAVLSNEIEDTGKVFRYTKEMRGQGIELLPPDVNES
                     QLGFTPTRGAIRYGLAAIKGIGFASVNAIIKARESGRFQSLADFADRVEEGAINKRVF
                     EGLVFSGAFDSLKEDAETVNRWRARLFNGIDGALACSARTRRARALGQNDLFGEYPAH
                     SAVQPQLADATPWTLTEVLAAEKKALGFYITGHPLDAHSETISKLGAVTSVELGSHES
                     GSRATVAGLVTDLQLRTTKKGDRFAIFRLEDHAGAVKCVLWPEPFNRHGAVTNNDATV
                     LVTGRAEISDDGAITVIVERVVELDQAIQQKARELVVRLPAAADAAKLSDAIRKLIEP
                     SKGDCDVFIELITEGMLVRVRAHPSLKVMGSASMETALRDLGCEVSWEGHHTSSVRAA
                     AASRAA"
BASE COUNT          348 a          472 c          405 g          365 t
ORIGIN      
        1 gattacaacg acgggcattc cgtgaaaacg cgcgaagccg caaacgatgg ccggatcatc
       61 ggcataacga cgatctccgt ggacttctac aaagccctca aataaacgtt cgatgaagtc
      121 cagcgtgtgc ggccgctcgg gatggcgagc aagccggacg cggtcgaaag ccgagttcga
      181 ttcttccgtg ttcagtttgc tctgcttcgc catgtgctca cgcggcgcgg ctggcagccg
      241 cagctcttac ggaagatgtg tgatgacctt cccagctaac ctcgcagcca agatctcgta
      301 acgcagtttc catcgacgcg ctgcccatca ctttcaggga tggatgagcg cgcaccctaa
      361 ccaacatgcc ttcagtgatc agttcaatga aaacgtcgca gtcacctttc gatggttcga
      421 tcaactttct gattgcatcg gagagctttg cagcatcggc cgcggccggc aaacgaacca
      481 ccagttccct cgccttctgt tgaatggctt gatcaagctc aactactctt tccacgatca
      541 ctgtgatggc gccgtcgtcg ctgatttccg ctcttccggt taccagaacc gttgcgtcat
      601 tgttggtgac cgcgccgtgc cggttgaaag gttccggcca cagcacgcat tttacggcgc
      661 cggcgtggtc ctccaatcga aagatggcaa agcgatcgcc cttcttggtc gtgcgaagct
      721 gcaggtctgt aacaagaccc gcgacggtcg cgcgcgatcc gctctcgtgt gaacccagtt
      781 caaccgatgt caccgcgcct agcttcgaga tcgtttcaga atgcgcatcc aaggggtggc
      841 cggtgatgta gaaccccaag gctttctttt ccgctgccag gacttcggta agcgtccatg
      901 gagtcgcatc agcaagttga ggttgtaccg cagaatgtgc aggatattct ccaaagagat
      961 cgttctgccc cagcgccctg gcccgccgcg ttctcgctga acatgcaagg gcaccgtcga
     1021 ttccgttgaa tagccgagct cgccagcgat tgaccgtttc agcatcttcc ttcagcgaat
     1081 caaatgctcc gctaaacacc agtccctcga aaacgcgttt gttaatcgcg ccttcctcaa
     1141 ctcgatcggc aaaatcggca agcgactgaa agcgtcccga ctcgcgtgcc ttgattatcg
     1201 cgttgacgct tgcgaaaccg atgcccttaa tcgcggccag accgtaacga atggcgcctc
     1261 tcgtcggcgt aaagccgagc tggctttcgt taacatcagg cggcaagagt tcaattccct
     1321 gacctctcat ctccttcgta taacgaaata ccttgcccgt atcttcaatc tcattcgata
     1381 aaaccgctgc gtagaagtgt tctggaaaat gcgctttgag gtaagccgtt tgaaatgcga
     1441 gatacgcgta agcgacgctg tgcgccttag gaaaaccgta gtcagcaaac tgtttcatca
     1501 aagagaaaat ctgttgcgcc ttatcacgct taatgccacg cgcgaccgcg ccgaggataa
     1561 acttctgctc ctgctgagcc atttcttcgc
//
LOCUS       DASZZE010000492         1577 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_161777, whole genome shotgun sequence.
ACCESSION   DASZZE010000492 DASZZE010000000
VERSION     DASZZE010000492.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1577)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1577)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1577
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161777"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1429)
                     /locus_tag="VHD88_09530"
     CDS             complement(<1..1429)
                     /locus_tag="VHD88_09530"
                     /inference="COORDINATES: protein motif:HMM:NF014269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LON peptidase substrate-binding
                     domain-containing protein"
                     /protein_id="HVS22076.1"
                     /translation="MPKKIDEQVIEALEPSEAEPQLQIPDELPLLPLRDIVIYPFMIV
                     PLFVSRERSIRAVDEALGEHRMILLDCQKDLDKEEPRQDDLYKVGTVAVIMRMLKLPD
                     GRIRILVQGISRAQVEAVDSTGEYLHARLQVMQEVMAPERSLEVEALMRNVRGSMEKA
                     ASLGKNISPEVMAIIANLDDAGRLADLSASNLELKVEDAQSVLEIADTTERLRRVNEL
                     LNKEIEVLTVQQEINTQARADIDRSQREFYLRQQMKAIQGELGEGNELAEEIQQFREK
                     IEAAKMPKPAEEEALRQLKKLERMHPDAAETATLRNWMEIVTDLPWSKSSKDNLDLHK
                     AERILNEDHYGLEKVKERIIEALAVRKLKEKPKGPILCLVGPPGVGKTSLGRSVARAL
                     GRKFMRLSLGGVHDEAEIRGHRRTYVGAMPGRVIQAIQQAGTNNPLIMLDEIDKVGAD
                     FRGDPSSALLEVLDPEQNNSFRDNYL"
BASE COUNT          306 a          489 c          385 g          397 t
ORIGIN      
        1 tgagatagtt gtcgcgaaag ctgttgttct gctctggatc gagaacttca agcaatgctg
       61 atgagggatc tccgcgaaaa tccgcgccga ccttgtcaat ttcatcgagc atgatcagcg
      121 gattgtttgt gcccgcttgc tgaatcgcct gaataacccg cccgggcatc gccccaacat
      181 acgtccgccg atggccgcgt atctcagctt catcatgaac gccaccgaga ctgagccgca
      241 tgaactttcg gcccagcgcg cgcgcaaccg agcggcccag actggtcttt ccaactcccg
      301 gcggaccaac cagacaaagt atcgggcctt taggtttctc ttttaatttg cgaaccgcga
      361 gcgcctcaat gattcgctcc ttaactttct ccagaccgta gtgatcttca ttcagaatgc
      421 gctcggcctt gtgcagatca agattgtcct tcgaagattt cgaccacggc aggtcggtga
      481 cgatttccat ccagttgcgc agcgtcgccg tttccgccgc gtcgggatgc atgcgttcaa
      541 gctttttgag ttgccgcagc gcttcttctt ctgcaggctt tggcatcttc gccgcttcaa
      601 tcttttcgcg aaactgttga atctcttccg ccagctcgtt cccttcccca agctcgccct
      661 ggatcgcctt catttgctgg cgcagataaa actcgcgctg cgaacgatcg atgtctgcgc
      721 gcgcttgcgt attgatttcc tgctgaacgg tgagcacctc gatttcttta ttcagtaact
      781 cgttgacgcg tcgcagccgc tccgtggtgt ctgcgatctc aagcacggat tgcgcgtcct
      841 caactttcag ttccaggttc gacgctgaca gatcggcaag acgcccggca tcgtcgagat
      901 tcgcgatgat cgccatcacc tcgggcgaga tgttcttgcc caggctcgca gccttttcca
      961 tcgaaccgcg cacgttgcgc atcagcgctt cgacttccaa cgaacgctcc ggcgccatca
     1021 cttcctgcat cacttgcagt cgcgcgtgca ggtattctcc ggttgagtca acggcttcga
     1081 cttgcgcccg ggaaattccc tgaaccagta tgcgtatgcg gccgtccggc agcttcagca
     1141 tccgcatgat cacggccacc gtgccgactt tgtacagatc atcctgtcgc ggctcttctt
     1201 tatcgagatc tttctggcag tccagaagga tcatccgatg ctcgcccagc gcttcatcca
     1261 ccgcgcgaat cgaccgttca cgcgaaacaa acagcggcac aatcatgaac ggatagatga
     1321 cgatgtcgcg cagcggcaac agcggcaact catcgggaat ctgcaactga ggctcagctt
     1381 cgctcggctc cagcgcctcg ataacttgtt cgtcgatctt ttttggcata ttagtgaatt
     1441 cgtcaacgca gtcgcggctc tggtgtctct acatcctttt cagtaattgg aactttgaac
     1501 tccgacccgc gccgatcttt tatcttcggc aaatgaatca gcagcacgcc cttagacaat
     1561 tcagctgtcg catcctt
//
LOCUS       DASZZE010000493         1618 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U6228
            k141_162883, whole genome shotgun sequence.
ACCESSION   DASZZE010000493 DASZZE010000000
VERSION     DASZZE010000493.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37957041
            Sequence Read Archive: SRR12277191
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1618)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1618)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/01/2024 11:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,909
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 3 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1618
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_162883"
                     /isolate="SMAG_U6228"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="Switzerland"
                     /lat_lon="46.49 N 9.93 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..584)
                     /locus_tag="VHD88_09535"
     CDS             complement(<1..584)
                     /locus_tag="VHD88_09535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS22077.1"
                     /translation="MSAPNIDTIVSLAKRRGFVYPSSEIYGGLGSAWDYGPLGVELCN
                     NVRAAWWRWMVHERDDIEGLDSSIILNRLIWKYSGHEETFTDPLVDCRECKTRLRADK
                     LDDGKCPKCGSKNLTEPRPFNLMFQTHVGATAEDDESALVYLRPETAQGIFINFLNVL
                     NTSRRKLPFGVAQIGKSFRNEVTPGNFIFRTREF"
     gene            complement(794..982)
                     /locus_tag="VHD88_09540"
     CDS             complement(794..982)
                     /locus_tag="VHD88_09540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS22078.1"
                     /translation="MSDNGGGGGSSVGVVAVLVIFVIVIVLAFFAYRSGMFGGKKTQV
                     NVNVTVPQAAPQRPASSP"
     gene            complement(1169..>1618)
                     /locus_tag="VHD88_09545"
     CDS             complement(1169..>1618)
                     /locus_tag="VHD88_09545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVS22079.1"
                     /translation="GDAMCRQRAMASTSIVPKKPPVVECKPFDQFQVVAFDDDKARFD
                     NLAIELQNAPDSQAYIIVYAGKTSRTGQADLLSKRTTDYLVTNRGIDAGRITIVNGGY
                     RDSDFFEIWICPPGAERPQPTPTVQPGEVQPARERTRPRRPRRSGEE"
BASE COUNT          363 a          461 c          456 g          338 t
ORIGIN      
        1 tcgaactcgc gcgtgcgaaa gatgaagttg ccgggcgtga cttcgttgcg aaacgatttg
       61 ccgatttgcg ccacgccgaa aggcagcttg cgccggctgg tattcagcac gttgagaaag
      121 tttatgaaga tgccctgcgc agtttcggga cggagataga cgagcgcgga ctcgtcgtct
      181 tcggcggtcg cgccaacgtg agtttggaac attaagttga agggacgcgg ttcggttaga
      241 ttcttcgacc cacatttggg gcacttgccg tcgtcgagtt tgtccgcgcg caggcgcgtc
      301 ttgcattcgc ggcaatcaac cagcggatcc gtaaaagtct cttcgtggcc tgaatatttc
      361 caaatcaaac gattcaggat gatcgacgaa tcgagacctt cgatgtcgtc acgctcgtga
      421 accatccagc gccaccacgc cgcacgcacg ttgttgcaga gttcgacgcc gagcgggcca
      481 tagtcccacg cgctgcccag gccgccgtag atttcggagg acggatagac aaagccgcgc
      541 cgtttggcga gcgaaactat cgtatcgatg ttgggcgcag acacgtgtta gtagtttgga
      601 ggcgggctac tgcccgccat ttgcccaatc ataattagaa aactgagcgg agaacgagtg
      661 tagcagtcaa ggcgcgcaga tcaaaagaaa aagaggaagc tgcaaagcct tcctctcaaa
      721 caatgctgcc acgccgtccg caacgtgacc agcgttataa cgccgaatta gatcgaaatt
      781 gaattgactt gatttaaggc gatgacgcgg gtctttgcgg cgctgcctga ggcaccgtca
      841 cgttaacatt gacctgagtc ttcttcccgc cgaacatgcc agacctgtac gcaaaaaacg
      901 ccaacacgat cacgatcacg aaaatcacga gcacggcaac cacgccgacg ctgctgccgc
      961 ctccgccgcc attgtcactc atttcattcc tcctttgaag gacgctatgc cgtttcgctt
     1021 gcgcgggtgt aggactaatg caaacaaact cttagcacac ggcctgcggg acgtcaaacg
     1081 cgaacacgaa aacaaaaagc aggtaacgac aagaggtcgt cacctgcttt cgaaaggccc
     1141 acgttcaagg gctaattgtt aagagcgatc attcttcgcc cgaccggcgc ggtcgtcttg
     1201 gccgcgtgcg ttccctggcg ggctgaacct cgcccggttg gaccgttggt gtcggctggg
     1261 ggcgttctgc gcccggcgga caaatccaaa tctcgaagaa gtcgctgtcg cgatagccac
     1321 catttacgat ggtgatgcgt cccgcgtcga ttcctcgatt ggtaaccaga tagtccgtcg
     1381 tgcgcttgct cagcagatcg gcctggcccg tgcggctggt tttcccagca tagacgatga
     1441 tgtaagcctg cgagtcagga gcgttctgca actcgatggc caggttgtca aagcgcgcct
     1501 tgtcatcatc gaaggccacg acctgaaact ggtcgaacgg cttgcactca accaccggcg
     1561 gtttcttcgg cacgatgctc gtcgaagcca tagcccgctg gcgacacatt gcgtcgcc
//
